Query 006933
Match_columns 625
No_of_seqs 323 out of 2338
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 16:34:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09525 lacZ beta-D-galactosi 100.0 3E-146 7E-151 1294.1 71.7 584 1-607 298-1025(1027)
2 PRK10340 ebgA cryptic beta-D-g 100.0 8E-145 2E-149 1285.2 72.7 600 1-620 282-1012(1021)
3 COG3250 LacZ Beta-galactosidas 100.0 5.6E-77 1.2E-81 680.1 33.9 456 1-510 249-707 (808)
4 PRK10150 beta-D-glucuronidase; 100.0 1.4E-63 3.1E-68 568.6 34.1 303 1-325 241-597 (604)
5 PF02836 Glyco_hydro_2_C: Glyc 100.0 1.9E-57 4.2E-62 475.7 25.3 287 39-325 1-298 (298)
6 PF02929 Bgal_small_N: Beta ga 100.0 2.3E-42 4.9E-47 356.9 11.7 151 452-607 1-276 (276)
7 KOG2230 Predicted beta-mannosi 99.9 2.9E-23 6.4E-28 220.3 22.2 180 1-196 278-494 (867)
8 PF03198 Glyco_hydro_72: Gluca 99.7 1E-15 2.3E-20 156.7 18.2 220 37-268 9-281 (314)
9 PF00150 Cellulase: Cellulase 99.5 4.9E-13 1.1E-17 137.9 15.3 206 48-268 3-279 (281)
10 PF02449 Glyco_hydro_42: Beta- 99.3 4.5E-11 9.8E-16 129.4 15.2 227 71-321 7-369 (374)
11 PLN03059 beta-galactosidase; P 99.3 1.2E-09 2.7E-14 125.5 25.4 187 38-235 29-257 (840)
12 PF01301 Glyco_hydro_35: Glyco 99.2 6.6E-10 1.4E-14 117.5 16.8 144 45-194 1-179 (319)
13 COG3934 Endo-beta-mannanase [C 99.0 2.4E-09 5.3E-14 113.9 9.9 238 72-322 24-321 (587)
14 COG1874 LacA Beta-galactosidas 98.8 4.7E-08 1E-12 111.0 13.1 127 42-174 4-167 (673)
15 smart00633 Glyco_10 Glycosyl h 98.3 1.1E-05 2.3E-10 83.0 14.6 189 100-315 19-253 (254)
16 PF14488 DUF4434: Domain of un 98.2 2.1E-05 4.7E-10 75.4 13.4 118 69-194 15-160 (166)
17 KOG0496 Beta-galactosidase [Ca 98.1 0.00016 3.5E-09 81.0 17.7 141 37-185 18-189 (649)
18 PF12876 Cellulase-like: Sugar 98.0 5.6E-06 1.2E-10 70.9 5.0 60 150-209 1-86 (88)
19 PF13204 DUF4038: Protein of u 98.0 5.8E-05 1.2E-09 79.0 12.6 178 48-236 8-243 (289)
20 PF07745 Glyco_hydro_53: Glyco 97.7 0.00057 1.2E-08 72.5 14.3 218 78-315 28-331 (332)
21 PF00331 Glyco_hydro_10: Glyco 97.3 0.0042 9.2E-08 66.0 14.3 232 66-319 11-319 (320)
22 COG5309 Exo-beta-1,3-glucanase 97.1 0.021 4.6E-07 57.8 16.2 188 65-269 54-284 (305)
23 COG3867 Arabinogalactan endo-1 96.8 0.054 1.2E-06 55.7 16.0 157 77-236 65-285 (403)
24 PF01229 Glyco_hydro_39: Glyco 96.3 0.05 1.1E-06 61.2 13.7 230 72-318 37-358 (486)
25 TIGR03356 BGL beta-galactosida 95.8 0.046 9.9E-07 60.5 9.8 94 71-170 51-163 (427)
26 COG2730 BglC Endoglucanase [Ca 95.4 0.053 1.2E-06 59.6 8.8 111 76-191 75-221 (407)
27 COG3693 XynA Beta-1,4-xylanase 95.1 1.5 3.3E-05 46.1 17.3 205 99-322 84-343 (345)
28 PRK13511 6-phospho-beta-galact 94.7 0.13 2.7E-06 57.8 9.2 89 71-170 51-162 (469)
29 TIGR01233 lacG 6-phospho-beta- 93.9 0.24 5.1E-06 55.5 9.3 89 71-170 50-161 (467)
30 PRK15014 6-phospho-beta-glucos 93.9 0.16 3.5E-06 57.0 7.9 89 72-170 67-180 (477)
31 COG2723 BglB Beta-glucosidase/ 92.8 0.49 1.1E-05 52.3 9.2 91 72-170 57-170 (460)
32 PLN02998 beta-glucosidase 91.5 0.63 1.4E-05 52.5 8.5 90 71-170 79-192 (497)
33 PLN02849 beta-glucosidase 91.4 0.79 1.7E-05 51.8 9.1 90 71-170 76-189 (503)
34 PLN02814 beta-glucosidase 91.3 0.79 1.7E-05 51.8 8.9 90 71-170 74-187 (504)
35 COG3534 AbfA Alpha-L-arabinofu 90.9 2 4.4E-05 47.0 11.0 97 72-189 46-206 (501)
36 PRK09852 cryptic 6-phospho-bet 90.7 0.77 1.7E-05 51.5 8.1 92 71-170 68-182 (474)
37 PRK09589 celA 6-phospho-beta-g 90.5 1 2.2E-05 50.7 8.8 90 71-170 64-178 (476)
38 PF00232 Glyco_hydro_1: Glycos 90.2 0.66 1.4E-05 51.9 7.0 90 71-170 55-168 (455)
39 PRK09593 arb 6-phospho-beta-gl 89.9 1.1 2.5E-05 50.3 8.7 91 71-169 70-183 (478)
40 KOG2024 Beta-Glucuronidase GUS 88.3 0.31 6.8E-06 49.4 2.4 96 23-118 80-196 (297)
41 TIGR02635 RhaI_grampos L-rhamn 87.9 45 0.00098 36.4 21.0 193 57-260 23-236 (378)
42 PF03659 Glyco_hydro_71: Glyco 84.7 2 4.3E-05 47.0 6.4 75 71-162 14-95 (386)
43 COG5520 O-Glycosyl hydrolase [ 82.4 76 0.0017 34.1 19.0 162 85-252 77-289 (433)
44 smart00769 WHy Water Stress an 81.0 5.3 0.00011 34.7 6.6 50 331-381 20-70 (100)
45 PF01120 Alpha_L_fucos: Alpha- 79.2 28 0.00061 37.4 12.7 116 77-194 94-244 (346)
46 PF11797 DUF3324: Protein of u 78.1 38 0.00083 31.4 11.7 67 332-404 48-116 (140)
47 PF03168 LEA_2: Late embryogen 73.3 6.8 0.00015 33.3 5.0 49 331-380 1-50 (101)
48 PF10633 NPCBM_assoc: NPCBM-as 71.5 16 0.00035 30.0 6.7 67 331-404 10-77 (78)
49 PF09284 RhgB_N: Rhamnogalactu 67.8 10 0.00023 38.3 5.5 35 444-480 3-39 (249)
50 PF00232 Glyco_hydro_1: Glycos 67.2 2.8 6.1E-05 46.8 1.6 76 226-321 355-451 (455)
51 PF06045 Rhamnogal_lyase: Rham 65.8 13 0.00027 36.9 5.5 41 440-482 7-48 (203)
52 COG2876 AroA 3-deoxy-D-arabino 65.3 42 0.00091 34.6 9.2 60 49-117 43-116 (286)
53 PF14871 GHL6: Hypothetical gl 64.1 36 0.00078 31.3 8.0 76 78-154 4-123 (132)
54 TIGR02631 xylA_Arthro xylose i 55.1 2.4E+02 0.0052 30.8 13.8 196 63-269 21-247 (382)
55 cd00019 AP2Ec AP endonuclease 52.1 1E+02 0.0023 31.5 10.1 88 72-174 83-186 (279)
56 TIGR01233 lacG 6-phospho-beta- 52.0 51 0.0011 37.1 8.1 80 227-321 368-462 (467)
57 PRK13209 L-xylulose 5-phosphat 50.0 70 0.0015 32.8 8.4 97 74-193 99-212 (283)
58 PRK09852 cryptic 6-phospho-bet 49.7 65 0.0014 36.3 8.5 87 226-321 365-467 (474)
59 COG1470 Predicted membrane pro 49.5 1E+02 0.0022 34.3 9.5 61 331-404 402-469 (513)
60 PF07705 CARDB: CARDB; InterP 49.5 1.2E+02 0.0026 25.3 8.4 60 331-402 24-83 (101)
61 PF11790 Glyco_hydro_cc: Glyco 48.7 39 0.00084 34.3 6.1 63 201-263 136-209 (239)
62 PF00703 Glyco_hydro_2: Glycos 48.0 14 0.0003 31.6 2.3 17 21-37 94-110 (110)
63 PRK12331 oxaloacetate decarbox 47.3 71 0.0015 35.7 8.2 79 33-116 37-142 (448)
64 smart00812 Alpha_L_fucos Alpha 46.7 2.9E+02 0.0062 30.3 12.7 111 77-189 84-226 (384)
65 PRK13397 3-deoxy-7-phosphohept 44.4 53 0.0011 33.8 6.1 60 50-118 14-87 (250)
66 cd08574 GDPD_GDE_2_3_6 Glycero 44.4 2.4E+02 0.0052 28.7 11.1 77 94-193 111-187 (252)
67 PRK12677 xylose isomerase; Pro 44.3 4.5E+02 0.0097 28.8 13.8 99 64-165 21-136 (384)
68 PRK09589 celA 6-phospho-beta-g 43.6 91 0.002 35.2 8.5 87 226-321 367-470 (476)
69 smart00481 POLIIIAc DNA polyme 43.0 62 0.0013 25.5 5.2 42 76-117 17-61 (67)
70 PRK13398 3-deoxy-7-phosphohept 43.0 1.3E+02 0.0028 31.2 8.9 61 49-118 25-99 (266)
71 PRK15014 6-phospho-beta-glucos 42.0 79 0.0017 35.7 7.7 87 226-321 368-471 (477)
72 cd06570 GH20_chitobiase-like_1 41.9 1.9E+02 0.0042 30.6 10.2 54 70-123 14-94 (311)
73 PRK12595 bifunctional 3-deoxy- 40.6 1.2E+02 0.0025 33.0 8.4 60 49-117 116-189 (360)
74 PRK13511 6-phospho-beta-galact 39.9 99 0.0021 34.8 8.0 80 227-321 369-464 (469)
75 PRK09856 fructoselysine 3-epim 38.7 2.9E+02 0.0063 28.0 10.9 101 73-193 89-206 (275)
76 TIGR01531 glyc_debranch glycog 37.7 62 0.0014 40.9 6.3 47 44-93 103-151 (1464)
77 PLN02361 alpha-amylase 37.2 99 0.0021 34.1 7.3 68 47-119 7-98 (401)
78 cd08556 GDPD Glycerophosphodie 37.1 1.8E+02 0.0039 27.4 8.5 72 96-194 48-119 (189)
79 PRK09593 arb 6-phospho-beta-gl 37.1 1.1E+02 0.0023 34.6 7.7 87 226-321 368-471 (478)
80 PF11906 DUF3426: Protein of u 36.4 2.1E+02 0.0045 26.4 8.5 49 332-381 74-134 (149)
81 PF01261 AP_endonuc_2: Xylose 36.2 1.6E+02 0.0034 28.0 8.0 96 73-183 70-183 (213)
82 cd08582 GDPD_like_2 Glyceropho 35.9 3.2E+02 0.007 27.1 10.4 130 33-194 24-159 (233)
83 COG0296 GlgB 1,4-alpha-glucan 35.3 63 0.0014 37.6 5.6 46 72-117 163-234 (628)
84 PRK09856 fructoselysine 3-epim 34.1 2.3E+02 0.005 28.8 9.2 86 74-164 13-111 (275)
85 KOG0626 Beta-glucosidase, lact 34.0 28 0.00061 39.3 2.4 90 72-170 89-203 (524)
86 PRK14565 triosephosphate isome 33.8 2.1E+02 0.0046 29.1 8.6 125 52-196 56-197 (237)
87 PF00128 Alpha-amylase: Alpha 33.6 42 0.00091 34.3 3.6 46 74-119 4-74 (316)
88 COG5608 LEA14-like dessication 32.9 71 0.0015 30.2 4.5 49 330-380 54-104 (161)
89 PF13663 DUF4148: Domain of un 32.9 47 0.001 26.0 2.9 30 70-99 18-48 (58)
90 PF14221 DUF4330: Domain of un 32.7 1.2E+02 0.0025 29.3 6.2 15 7-21 114-128 (168)
91 PLN02998 beta-glucosidase 32.6 1.1E+02 0.0024 34.7 7.0 73 228-321 394-486 (497)
92 PF03162 Y_phosphatase2: Tyros 32.5 1.9E+02 0.0041 27.6 7.6 75 77-162 22-97 (164)
93 PLN02814 beta-glucosidase 32.4 1.2E+02 0.0026 34.5 7.2 83 226-322 387-482 (504)
94 TIGR00542 hxl6Piso_put hexulos 31.9 3.4E+02 0.0073 27.8 10.0 97 74-193 94-207 (279)
95 COG0106 HisA Phosphoribosylfor 31.7 2.8E+02 0.0061 28.4 8.9 109 77-197 87-200 (241)
96 PTZ00333 triosephosphate isome 30.8 3.5E+02 0.0076 27.8 9.7 63 48-118 56-130 (255)
97 PLN02849 beta-glucosidase 30.4 1.4E+02 0.0031 33.9 7.4 76 227-322 386-482 (503)
98 cd08562 GDPD_EcUgpQ_like Glyce 29.5 4.3E+02 0.0093 26.0 10.0 74 95-193 85-159 (229)
99 PF12891 Glyco_hydro_44: Glyco 29.4 51 0.0011 33.6 3.2 54 136-192 102-176 (239)
100 smart00642 Aamy Alpha-amylase 29.0 1.3E+02 0.0027 28.8 5.8 48 72-119 17-92 (166)
101 PF02055 Glyco_hydro_30: O-Gly 28.4 4.8E+02 0.01 29.7 11.1 170 136-324 199-424 (496)
102 KOG0098 GTPase Rab2, small G p 28.0 2.4E+02 0.0053 27.9 7.3 110 29-154 38-171 (216)
103 PRK09936 hypothetical protein; 27.9 5.1E+02 0.011 27.3 10.2 95 70-170 34-145 (296)
104 PRK14042 pyruvate carboxylase 27.1 2.7E+02 0.0059 32.4 8.9 60 53-117 80-143 (596)
105 TIGR03234 OH-pyruv-isom hydrox 27.1 3.6E+02 0.0078 27.0 9.1 100 74-193 84-202 (254)
106 PF13200 DUF4015: Putative gly 26.3 1.4E+02 0.003 31.9 5.9 48 70-117 9-81 (316)
107 PF11386 VERL: Vitelline envel 26.0 27 0.00059 28.7 0.5 29 84-117 5-33 (78)
108 cd07937 DRE_TIM_PC_TC_5S Pyruv 25.0 2.1E+02 0.0045 29.7 6.9 46 71-116 88-137 (275)
109 PF04015 DUF362: Domain of unk 24.9 1.9E+02 0.0042 28.2 6.5 52 64-115 13-75 (206)
110 PF13380 CoA_binding_2: CoA bi 24.8 1.6E+02 0.0035 26.2 5.3 47 70-116 62-108 (116)
111 PRK04302 triosephosphate isome 24.5 4.9E+02 0.011 25.8 9.4 90 80-196 78-181 (223)
112 PLN02784 alpha-amylase 24.4 2.7E+02 0.0058 33.9 8.3 69 47-119 498-590 (894)
113 cd06565 GH20_GcnA-like Glycosy 24.4 1.6E+02 0.0034 31.0 6.0 56 67-122 10-85 (301)
114 PLN02429 triosephosphate isome 24.1 5.5E+02 0.012 27.4 9.9 58 53-118 119-188 (315)
115 TIGR02629 L_rham_iso_rhiz L-rh 23.9 6E+02 0.013 28.1 10.3 107 56-165 52-172 (412)
116 PF02638 DUF187: Glycosyl hydr 23.8 1.2E+02 0.0027 32.0 5.1 44 72-115 17-88 (311)
117 PRK13396 3-deoxy-7-phosphohept 23.4 4.1E+02 0.0089 28.8 8.9 60 49-117 98-172 (352)
118 PRK01060 endonuclease IV; Prov 23.3 5.7E+02 0.012 26.0 9.9 82 76-166 14-112 (281)
119 cd06568 GH20_SpHex_like A subg 23.2 5.6E+02 0.012 27.3 10.0 54 70-123 14-101 (329)
120 PRK08673 3-deoxy-7-phosphohept 23.1 1.9E+02 0.0041 31.1 6.3 59 50-117 92-164 (335)
121 cd00019 AP2Ec AP endonuclease 23.1 5.4E+02 0.012 26.2 9.7 88 70-167 7-109 (279)
122 PRK13210 putative L-xylulose 5 23.0 5.5E+02 0.012 26.0 9.7 45 73-117 93-153 (284)
123 cd02742 GH20_hexosaminidase Be 21.8 1.3E+02 0.0028 31.6 4.7 54 70-123 12-98 (303)
124 PRK00042 tpiA triosephosphate 21.4 3.3E+02 0.0071 28.0 7.4 62 49-118 54-127 (250)
125 PF05913 DUF871: Bacterial pro 21.0 1.1E+02 0.0024 33.2 4.0 47 72-118 12-68 (357)
126 TIGR00222 panB 3-methyl-2-oxob 21.0 5.7E+02 0.012 26.5 9.0 83 63-152 82-171 (263)
127 COG4822 CbiK Cobalamin biosynt 20.6 4E+02 0.0086 26.9 7.3 21 134-154 240-260 (265)
128 PF07233 DUF1425: Protein of u 20.3 3.3E+02 0.0071 23.3 6.1 46 331-380 29-79 (94)
129 PF04748 Polysacc_deac_2: Dive 20.2 3.1E+02 0.0067 27.3 6.8 113 70-187 70-200 (213)
130 PF05706 CDKN3: Cyclin-depende 20.2 3.5E+02 0.0075 26.1 6.7 78 74-166 58-142 (168)
131 PF14100 PmoA: Methane oxygena 20.0 5E+02 0.011 26.8 8.6 50 566-620 216-266 (271)
No 1
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=100.00 E-value=3.2e-146 Score=1294.14 Aligned_cols=584 Identities=45% Similarity=0.777 Sum_probs=535.8
Q ss_pred CCCCCCCCCCCcEEEEEEEEeCCCCeEEEEEEEEeeEEEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 006933 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (625)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl 80 (625)
+|+|||+|+|+||+|+++|.+++|+++|+++++||||+|++++++|+|||+||+|||+|+|+++|..|++++++.|++||
T Consensus 298 ~p~lWs~e~P~LY~l~v~l~~~~g~v~d~~~~~~GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di 377 (1027)
T PRK09525 298 NPKLWSAETPNLYRAVVSLLDADGTLIEAEAYDVGFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDI 377 (1027)
T ss_pred CCCcCCCCCCeeEEEEEEEEeCCCcEEEEEEeeEEEEEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHH
Confidence 69999999999999999998778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHHHHHHHHHHhCCCceE
Q 006933 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASI 160 (625)
Q Consensus 81 ~lmK~~g~NaVRtshyp~~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSI 160 (625)
++||++|+|+||+||||++|+||++|||+|||||+|+++++||+.+... +.++|.|.+++++++++||+|+||||||
T Consensus 378 ~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~---~~~dp~~~~~~~~~~~~mV~RdrNHPSI 454 (1027)
T PRK09525 378 LLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNR---LSDDPRWLPAMSERVTRMVQRDRNHPSI 454 (1027)
T ss_pred HHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccC---CCCCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 9999999999999999999999999999999999999999999753332 3688999999999999999999999999
Q ss_pred EEEEccCCCCCCCcHHHHHHHHHHhCCCCeEeccCCCCCCCCCCcccCCCCchh-----------HHHHHhhCCCCCCcE
Q 006933 161 ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVW-----------DIVMIAKDPTETRPL 229 (625)
Q Consensus 161 i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~~~~~~~~~~~Di~s~~Y~~~~-----------~~~~~~~~~~~~kP~ 229 (625)
|+||+|||++.+.++.+|++++|++||||||+|++++.....+|++++||++++ .+++|+.....+||+
T Consensus 455 i~WSlgNE~~~g~~~~~l~~~~k~~DptRpV~y~~~~~~~~~~Dv~~~my~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~ 534 (1027)
T PRK09525 455 IIWSLGNESGHGANHDALYRWIKSNDPSRPVQYEGGGADTAATDIICPMYARVDEDQPFPAVPKWSIKKWISLPGETRPL 534 (1027)
T ss_pred EEEeCccCCCcChhHHHHHHHHHhhCCCCcEEECCCCCCCCccccccCCCCCccccccccccchHHHHHHHhcCCCCCCE
Confidence 999999999999999999999999999999999986544567999999998874 577887765557999
Q ss_pred EEEecccCcCCCCCcHHHHHHHHHhcCCceeEeEecccCCceeeecCCCceeeeecCCCCCCCCCccccccceecCCCCC
Q 006933 230 ILCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTP 309 (625)
Q Consensus 230 i~~Eygha~gns~g~~~~yw~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~p 309 (625)
|+|||||+|||++|++++||++|+++|.+||||||+|+|||+.+++++|++||+||||||+.|||++||+||||++||+|
T Consensus 535 i~cEY~Hamgn~~g~l~~yw~~~~~~~~~~GgfIW~w~Dqg~~~~~~~G~~~~~YGGDfgd~p~d~nFc~dGlv~~dR~p 614 (1027)
T PRK09525 535 ILCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFIWDWVDQGLTKYDENGNPWWAYGGDFGDTPNDRQFCMNGLVFPDRTP 614 (1027)
T ss_pred EEEechhcccCcCccHHHHHHHHhcCCCeeEEeeEeccCcceeeECCCCCEEEEECCcCCCCCCCCCceeceeECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHhhccEEEEE---cCCeEEEEecCCCCCCCCeEEEEEEEeCCEEEEEEeecCCccCCCCEEEEEeCCCCCcc
Q 006933 310 HPALHEVKYVYQAIKVSL---KKGTLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYS 386 (625)
Q Consensus 310 k~~~~e~k~~~~pv~~~~---~~~~~~v~N~~~f~~l~~~~~~w~l~~~g~~v~~g~~~~~~v~p~~~~~~~l~~~~~~~ 386 (625)
+|+++|+|++||||+|+. .+++|+|+|+|+|++|+++++.|+|..||+++++|++. ++|+|+++++|+||..|
T Consensus 615 ~p~~~E~K~v~qpv~~~~~~~~~~~~~i~N~~~F~~l~~~~~~w~~~~~G~~~~~g~~~-~~~~p~~~~~i~l~~~~--- 690 (1027)
T PRK09525 615 HPALYEAKHAQQFFQFSLLSTTPLTIEVTSEYLFRHSDNELLHWSVALDGKPLASGEVP-LDLAPQGSQRITLPELP--- 690 (1027)
T ss_pred CccHHHHHhhcCcEEEEEccCCCcEEEEEEcccCCcccccEEEEEEEECCEEEEeeeEc-cccCCCCceEEecCCCC---
Confidence 999999999999999987 23689999999999999999999999999999999996 79999999999998323
Q ss_pred cCCCCCCceEEEEEEEEeccccccccCCcEEEEEeeeeCCCCcCCCcccccCCcceEEEecCCeEEE-eCCceEEEEEEc
Q 006933 387 QWNSCSAEEIFLTVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQL-SHQNSWEIKFDI 465 (625)
Q Consensus 387 ~~~~~~~~e~~l~~~~~~~~~~~wa~~g~~va~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fdk 465 (625)
.. .+++||+|+|++++|++++||++||+||++||.|+......... .. ...+.++++++.|.| +++|++ +|||
T Consensus 691 ~~--~~~~e~~l~~~~~~~~~~~~a~~g~~va~~Q~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~~~~~~~--~f~~ 764 (1027)
T PRK09525 691 QP--ESAGQLWLNVEVVQPNATAWSEAGHRSAWQQWRLPEPLSLPLPT-AS-HAAPQLTQDEQDFCIELGNQRW--QFNR 764 (1027)
T ss_pred CC--CCCceEEEEEEEEECCCCcccCCCCEEEEEEEEeccCccccccc-cc-CCCceEEEcCCeEEEEECCEEE--EEEC
Confidence 21 35679999999999999999999999999999996332211011 11 233568888999999 999999 9999
Q ss_pred CCCcEEEEEECCEeeeccCcccceEecCCCCCCCCCCcc------hhhHHHHh---------------------------
Q 006933 466 QTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGESS------YYSRWRAA--------------------------- 512 (625)
Q Consensus 466 ~~G~l~~~~~~g~~~l~~~~~~~~wRa~tDND~g~~~~~------~~~~W~~a--------------------------- 512 (625)
++|.|+||+++|+++|.+||+|||||||||||+|..... +...|+.|
T Consensus 765 ~~G~l~s~~~~g~~~l~~~~~~~~wRaptdND~g~~~~~~~~~~~~~~~w~~ag~~~~~~~~~~~~~~~~~~~v~v~~~~ 844 (1027)
T PRK09525 765 QSGLLSQWWVGGKEQLLTPLRDQFTRAPLDNDIGVSEATRIDPNAWVERWKAAGLYQLEARLLQCDADTLADAVLITTEH 844 (1027)
T ss_pred CCceEEEEEECCEEeeccCCcCceECCCcccCcCccccccccccchHHHHHHcCCccceeEEEEEEEEecCCeEEEEEEE
Confidence 999999999999999999999999999999999875432 24678877
Q ss_pred --------------------------------------------------------------------------------
Q 006933 513 -------------------------------------------------------------------------------- 512 (625)
Q Consensus 513 -------------------------------------------------------------------------------- 512 (625)
T Consensus 845 ~~~~~~~~~~~~~~~y~i~~~G~i~v~~~~~~~~~~p~lPRiG~~~~lp~~~~~v~wyGrGP~EnY~Drk~~a~~G~y~~ 924 (1027)
T PRK09525 845 AYQHQGKTLFISRKTYRIDGQGEMTIDVDVEVASDLPPPARIGLTCQLAQVAERVSWLGLGPHENYPDRLLAACFGRWDL 924 (1027)
T ss_pred EeecCCCccEEEEEEEEEeCCCEEEEEEEEEeCCCCCCCceEEEEEECCccccccEEECCCCCCChhhhhhcCcEeEECC
Confidence
Q ss_pred ----------------ccCcceEEEEEeCCcceEEEEecCCCCCeeEEecCCCHHHHhhcCCCCCCCCCCeEEEEEcccc
Q 006933 513 ----------------ARADVRWVTFQNKEGIGIYASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKH 576 (625)
Q Consensus 513 ----------------nr~dvRw~~l~~~~g~gl~v~~~~~~~~f~fsa~~Yt~e~L~~a~H~~eL~~~~~~~l~iD~~q 576 (625)
||+||||++|+ ||+++ + .|+|||+|||+++|++|+|++||++++.|+|||||+|
T Consensus 925 ~V~~~~~pYv~PQEnGnr~dvrw~~l~-----~l~v~---~--~~~fsa~~yt~~~L~~a~H~~eL~~~~~~~l~iD~~q 994 (1027)
T PRK09525 925 PLSDMHTPYIFPSENGLRCGTRELNYG-----RHQIR---G--DFHFNISRYSQQQLMETSHRHLLQAEEGTWLNIDGFH 994 (1027)
T ss_pred cHHHhCCCCCCccCCCCccceEEEEEc-----CeEEE---e--eeeEEecCCCHHHHHhCcCHhhCCCCCCEEEEECccc
Confidence 99999999994 58886 4 3999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcCCCCCccccCccEEEEEEEE
Q 006933 577 MGLGGDDSWTPCVHDKYLVPAVAYSFSIRLS 607 (625)
Q Consensus 577 ~GvGg~~ScGp~~~~~Y~l~~~~y~~~f~l~ 607 (625)
|||||+|||||.+|++|+|+.++|+|+|+|+
T Consensus 995 ~GvGg~~S~g~~~~~~y~~~~~~~~~~f~~~ 1025 (1027)
T PRK09525 995 MGVGGDDSWSPSVHPEFLLSAGRYHYQLTWC 1025 (1027)
T ss_pred CCCCCCCCCCCCCCHHHCCCCCcEEEEEEEE
Confidence 9999999999999999999999999999986
No 2
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=100.00 E-value=7.9e-145 Score=1285.16 Aligned_cols=600 Identities=35% Similarity=0.641 Sum_probs=547.6
Q ss_pred CCCCCCCCCCCcEEEEEEEEeCCCCeEEEEEEEEeeEEEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 006933 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (625)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl 80 (625)
+|+|||+|+|+||+|+++|.+.+|+++|+++++||||+|++++++|+|||+||+|||||+|+++|..|++++++.|++||
T Consensus 282 ~p~lWs~e~P~LY~l~v~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl 361 (1021)
T PRK10340 282 QPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDI 361 (1021)
T ss_pred CCCcCCCCCCeeEEEEEEEEcCCCCEEEEEEeeeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHH
Confidence 69999999999999999998768999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHHHHHHHHHHhCCCceE
Q 006933 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASI 160 (625)
Q Consensus 81 ~lmK~~g~NaVRtshyp~~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSI 160 (625)
++||++|+|+||+||||++++|||+|||+|||||+|+++++||+.....+.+++++|.|.+++++++++||+|+||||||
T Consensus 362 ~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~~p~~~~~~~~~~~~mV~RdrNHPSI 441 (1021)
T PRK10340 362 QLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVDRIVRHIHAQKNHPSI 441 (1021)
T ss_pred HHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccCCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 99999999999999999999999999999999999999999997532323345789999999999999999999999999
Q ss_pred EEEEccCCCCCCCcHHHHHHHHHHhCCCCeEeccCCCCCCCCCCcccCCCCchhHHHHHhhCCCCCCcEEEEecccCcCC
Q 006933 161 ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETRPLILCEYSHAMGN 240 (625)
Q Consensus 161 i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~~~~~~~~~~~Di~s~~Y~~~~~~~~~~~~~~~~kP~i~~Eygha~gn 240 (625)
|+||+|||+++|.++.+|++++|++||||||+|+++. ....+||+|.||+....+.++.... .+||+|+|||+|+|||
T Consensus 442 i~WslGNE~~~g~~~~~~~~~~k~~DptR~v~~~~~~-~~~~~Dv~~~~Y~~~~~~~~~~~~~-~~kP~i~~Ey~hamgn 519 (1021)
T PRK10340 442 IIWSLGNESGYGCNIRAMYHAAKALDDTRLVHYEEDR-DAEVVDVISTMYTRVELMNEFGEYP-HPKPRILCEYAHAMGN 519 (1021)
T ss_pred EEEECccCccccHHHHHHHHHHHHhCCCceEEeCCCc-CccccceeccccCCHHHHHHHHhCC-CCCcEEEEchHhccCC
Confidence 9999999999999999999999999999999999864 3567999999999998887776543 4799999999999999
Q ss_pred CCCcHHHHHHHHHhcCCceeEeEecccCCceeeecCCCceeeeecCCCCCCCCCccccccceecCCCCCCccHHHHHHhh
Q 006933 241 SNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVY 320 (625)
Q Consensus 241 s~g~~~~yw~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~pk~~~~e~k~~~ 320 (625)
++|++++||++++++|.++|||||+|+|||+...+++|+.+|+||||||+.|+|++||+||||++||+|||+++|+|++|
T Consensus 520 ~~g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~g~~p~~~~f~~~Glv~~dr~p~p~~~e~k~~~ 599 (1021)
T PRK10340 520 GPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDYGDYPNNYNFCIDGLIYPDQTPGPGLKEYKQVI 599 (1021)
T ss_pred CCCCHHHHHHHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCCCCCCCCCcCcccceeECCCCCCChhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEE-c--CCeEEEEecCCCCCCCCeEEEEEEEeCCEEEEEEeecCCccCCCCEEEEEeCCCCCcccCCCCCCceEE
Q 006933 321 QAIKVSL-K--KGTLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIF 397 (625)
Q Consensus 321 ~pv~~~~-~--~~~~~v~N~~~f~~l~~~~~~w~l~~~g~~v~~g~~~~~~v~p~~~~~~~l~~~~~~~~~~~~~~~e~~ 397 (625)
|||+|+. . .++|+|+|+|+|++|+++.+.|+|..||+++++|++++++|+|+++++|+|| .| . ..++||+
T Consensus 600 ~pv~~~~~~~~~~~~~i~N~~~F~~l~~~~~~w~l~~dG~~~~~g~~~~~~i~p~~~~~v~l~-~~---~---~~~~e~~ 672 (1021)
T PRK10340 600 APVKIHALDLTRGELKVENKLWFTNLDDYTLHAEVRAEGETLASGQIKLRDVAPNSEAPLQIT-LP---Q---LDAREAF 672 (1021)
T ss_pred ceEEEEEecCCCCEEEEEECccCCCccccEEEEEEEECCEEEEEeeeccCccCCCCceEEEec-CC---C---CCCceEE
Confidence 9999986 3 6799999999999999999999999999999999998679999999999998 34 2 3466999
Q ss_pred EEEEEEeccccccccCCcEEEEEeeeeCCCCcC-CCcccccCCcceEEEecCCeEEE-eCCceEEEEEEcCCCcEEEEEE
Q 006933 398 LTVTAKLMNSTRWAEAGHVISTAQVQLPSKRER-LPHVIRTGDAIILQENLGNTIQL-SHQNSWEIKFDIQTGAVESWKV 475 (625)
Q Consensus 398 l~~~~~~~~~~~wa~~g~~va~~q~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fdk~~G~l~~~~~ 475 (625)
|+|++++|++|+||++||+||++||.|+..... .+..... ..++.++++++.+.| +++|++ +|||++|.|+||++
T Consensus 673 l~~~~~~~~~~~wa~~g~~va~~Q~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~--~fdk~tG~l~s~~~ 749 (1021)
T PRK10340 673 LNITVTKDSRTRYSEAGHSIATYQFPLKENTAQPVPFAPNN-ARPLTLEEDRLSCTVRGYNFAI--TFSKVSGKLTSWQV 749 (1021)
T ss_pred EEEEEEECCCccccCCCcEEEEEEEEecccccccccccccC-CCCeeEEecCCEEEEEeCCEEE--EEECCcceEEEEEe
Confidence 999999999999999999999999999632221 1011111 345778889999999 999999 99999999999999
Q ss_pred CCEeeeccCcccceEecCCCCCCCCCCcchhhHHHHh-------------------------------------------
Q 006933 476 EGVSVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAA------------------------------------------- 512 (625)
Q Consensus 476 ~g~~~l~~~~~~~~wRa~tDND~g~~~~~~~~~W~~a------------------------------------------- 512 (625)
+|++||.+||++||||||||||++. ....|+.|
T Consensus 750 ~g~~ll~~~~~~nfwRAptDND~~~----~~~~W~~ag~~~l~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~ 825 (1021)
T PRK10340 750 NGESLLTREPKINFFKPMIDNHKQE----YEGLWQPNHLQIMQEHLRDFAVEQSDGEVLIISRTVIAPPVFDFGMRCTYI 825 (1021)
T ss_pred CCeeeecCCCccceEeCCccCCcch----hhHHHHHcCCccceeEEEEEEEEeCCCeEEEEEEEEecCCcccceeEEEEE
Confidence 9999999999999999999999543 22446654
Q ss_pred --------------------------------------------------------------------------------
Q 006933 513 -------------------------------------------------------------------------------- 512 (625)
Q Consensus 513 -------------------------------------------------------------------------------- 512 (625)
T Consensus 826 y~i~~~G~i~v~~~~~~~~~~p~~lPRiG~~~~lp~~~~~v~wyGrGP~EnY~DRk~sa~~G~y~~~V~~~~~pYi~PQE 905 (1021)
T PRK10340 826 YRIAADGQVNVALSGERYGDYPHMIPCIGFTMGINGEYDQVAYYGRGPGENYADSQQANLIDIYRSTVDAMFENYPFPQN 905 (1021)
T ss_pred EEEcCCCEEEEEEEEEECCCCCccccceEEEEEcCccccccEEECCCCCCCchhhhhhcceeeecCcHHHhcCCCCCccC
Confidence
Q ss_pred --ccCcceEEEEEeCCcceEEEEecCCCCCeeEEecCCCHHHHhhcCCCCCCCCCCeEEEEEccccccccCCCCCCcCCC
Q 006933 513 --ARADVRWVTFQNKEGIGIYASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPCVH 590 (625)
Q Consensus 513 --nr~dvRw~~l~~~~g~gl~v~~~~~~~~f~fsa~~Yt~e~L~~a~H~~eL~~~~~~~l~iD~~q~GvGg~~ScGp~~~ 590 (625)
||+||||++|++.+|.||+|+ +.++|+|||+|||+++|++|+|++||++++.|+|||||+||||| ++||||.||
T Consensus 906 nGnr~dvrw~~l~~~~g~gl~v~---~~~~~~fsa~~ys~~~L~~a~H~~eL~~~~~~~l~iD~~q~GvG-~~SwGp~~~ 981 (1021)
T PRK10340 906 NGNRQHVRWTALTNRHGNGLLVV---PQRPINFSAWHYTQENIHAAQHTNELQKSDYITLNLDHQLLGLG-SNSWGSEVL 981 (1021)
T ss_pred CCCccceEEEEEECCCCCEEEEE---eCCCcEEEccCCCHHHHHhCcCHhhCCCCCCEEEEEcccccCCc-ccccCCCCC
Confidence 999999999999999999997 66789999999999999999999999999999999999999998 889999999
Q ss_pred CCccccCccEEEEEEEEeec-CCCCchhhhh
Q 006933 591 DKYLVPAVAYSFSIRLSPLT-AATSGYGIYK 620 (625)
Q Consensus 591 ~~Y~l~~~~y~~~f~l~p~~-~~~~~~~~~~ 620 (625)
++|+|+.++|+|+|+|+|+. ...+++++.+
T Consensus 982 ~~y~~~~~~~~~~f~l~p~~~~~~~~~~~~~ 1012 (1021)
T PRK10340 982 DSYRVWFRDFSYGFTLLPVSGGEATAQSLAS 1012 (1021)
T ss_pred HHHCCCCCcEEEEEEEEEcCCCccchHHHhh
Confidence 99999999999999999994 3444444443
No 3
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-77 Score=680.06 Aligned_cols=456 Identities=42% Similarity=0.717 Sum_probs=403.9
Q ss_pred CCCCCCCCCCCcEEEEEEEEeCCCCeEEEEEEEEeeEEEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 006933 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (625)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl 80 (625)
+|+|||||.|+||+|.++|++. |.++|++..+||||+||++++.|+||||||++||||||+++|..|+++.++.|++||
T Consensus 249 ~p~lWsp~~P~LY~l~~~L~~~-~~~~d~~~~~iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl 327 (808)
T COG3250 249 NPKLWSPEDPYLYRLVVTLKDA-NTLIDAEALRIGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDL 327 (808)
T ss_pred CcccCCCCCCceEEEEEEEEeC-CceeeEEEeeeccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHH
Confidence 6999999999999999999984 488999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHHHHHHHHHHhCCCceE
Q 006933 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASI 160 (625)
Q Consensus 81 ~lmK~~g~NaVRtshyp~~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSI 160 (625)
++||++|||+|||||||++++|||||||+|||||+|+++++||+ .++|.|++.+.+++++||+|+||||||
T Consensus 328 ~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~---------~~~~~~~k~~~~~i~~mver~knHPSI 398 (808)
T COG3250 328 KLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGM---------PDDPEWRKEVSEEVRRMVERDRNHPSI 398 (808)
T ss_pred HHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCC---------CCCcchhHHHHHHHHHHHHhccCCCcE
Confidence 99999999999999999999999999999999999999999986 388999999999999999999999999
Q ss_pred EEEEccCCCCCCCcHHHHHHHHHHhCCCCeEeccCCCCCCCCCCcccCCCCchhHHHHHhhCCCCCCcEEEEecccCcCC
Q 006933 161 ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETRPLILCEYSHAMGN 240 (625)
Q Consensus 161 i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~~~~~~~~~~~Di~s~~Y~~~~~~~~~~~~~~~~kP~i~~Eygha~gn 240 (625)
||||+|||++.|.++..+..++|+.||+|+++|++.. ...+|+.+.||...+....+... .+|.++|||+|+|+|
T Consensus 399 iiWs~gNE~~~g~~~~~~~~~~k~~d~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---p~p~~l~~~~~~~~n 473 (808)
T COG3250 399 IIWSLGNESGHGSNHWALYRWFKASDPTRPVQYEGRG--TEATDILSPMYERVDEILYFPGS---PRPLILCEYAHAMGN 473 (808)
T ss_pred EEEeccccccCccccHHHHHHHhhcCCccceeccCcc--ceeeecccchhhcCccccccCCC---CCCceeecchHhhcc
Confidence 9999999999999999999999999999999999875 35789999999988766665543 489999999999999
Q ss_pred CCCcHHHHHHHHHhcCCceeEeEecccCCceeeecCCCceeeeecCCCCCCCCCccccccceecCCCCCCccHHHHHHhh
Q 006933 241 SNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVY 320 (625)
Q Consensus 241 s~g~~~~yw~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~pk~~~~e~k~~~ 320 (625)
+.++...||..+.+++.++|+|+|+|+|+.+...++.|..+++++|+|++.|++..+|.+|.+.++|++.+++++.+..+
T Consensus 474 ~~~G~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~e~~~~~ 553 (808)
T COG3250 474 SYGGDYHYWGVFGEYPRLQGGFIWDWVDQRLIPIDETGNQAYAYGGDFGDYPNDRSFELNGLVFPDRQPNPGLKEAKVGT 553 (808)
T ss_pred CcCCceeeeehhccccccccceehhhcccccCcccccCccccccccccCCCccccchhcccccccccccCccchheeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEE-cCC-eEEEEecCCCCCCCCeEEEEEEEeCCEEEEEEeecCCccCCCCEEEEEeCCCCCcccCCCCCCceEEE
Q 006933 321 QAIKVSL-KKG-TLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFL 398 (625)
Q Consensus 321 ~pv~~~~-~~~-~~~v~N~~~f~~l~~~~~~w~l~~~g~~v~~g~~~~~~v~p~~~~~~~l~~~~~~~~~~~~~~~e~~l 398 (625)
+...|.. ... -+.+.|.+.|......++.|.+..+++.+.++.+.+-+.+|+++... +.. .. .... ++|
T Consensus 554 ~~~~f~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pg~~~~~-~~~-----~~--~~k~-~~l 624 (808)
T COG3250 554 QFWAFGDPKTFQGFLVTSENLFAEADRERLPKLRALLGETLGSLEWQLNDVPPGASWSS-LDE-----AL--RPKA-LYL 624 (808)
T ss_pred eeeeeeccccCCceEEechhheeeeehhhhhhhhhccceEeeeEEEEeecCCCcccccc-ccc-----cc--CCcc-eEE
Confidence 9999987 222 28899999999999999999889999999999998557777765432 321 11 2333 999
Q ss_pred EEEEEeccccccccCCcEEEEEeeeeCCCCcCCCcccccCCcceEEEecCCeEEE-eCCceEEEEEEcCCCcEEEEEECC
Q 006933 399 TVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQL-SHQNSWEIKFDIQTGAVESWKVEG 477 (625)
Q Consensus 399 ~~~~~~~~~~~wa~~g~~va~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fdk~~G~l~~~~~~g 477 (625)
+.+|...+.+.|+++ +|+.||.++..... +...+....+.+ +++..+ .|+|++|.+.+ ..+
T Consensus 625 ~~r~~~~~~~~~~~~---~~~~~~~l~~~~~~-----------~~~~e~~~~~~~~~~~~~~--~~~~~~g~~~~--~~d 686 (808)
T COG3250 625 TRRFTQPELTAWSEA---AADGQFTLSEVSAA-----------PLLVEDERLLQVEGDGKRL--QFEKQSGTLPP--LLD 686 (808)
T ss_pred EEEEeccccchhhhh---cccceeeecccccc-----------hhheeccceeEEeecCceE--EeccccCcccc--ccc
Confidence 999999999999999 89999999754311 222233556777 888888 99999999998 222
Q ss_pred EeeeccCcccceEecCCCCCCCCCCcchhhHHH
Q 006933 478 VSVMKRGIFPCFWRAPTDNDKGGGESSYYSRWR 510 (625)
Q Consensus 478 ~~~l~~~~~~~~wRa~tDND~g~~~~~~~~~W~ 510 (625)
+ .|||+|+|| .....+...|+
T Consensus 687 ~---------a~~~~~~~~---~~p~~~i~~w~ 707 (808)
T COG3250 687 K---------AFTRAPLDN---IDPNAWIEIWK 707 (808)
T ss_pred c---------ccccccccc---CCCccceeeee
Confidence 2 899999999 23344455676
No 4
>PRK10150 beta-D-glucuronidase; Provisional
Probab=100.00 E-value=1.4e-63 Score=568.60 Aligned_cols=303 Identities=28% Similarity=0.458 Sum_probs=254.5
Q ss_pred CCCCCCCCCCCcEEEEEEEEeCCCCeEEEEEEEEeeEEEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 006933 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (625)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl 80 (625)
+|+|||||+|+||+|+++|.+ +|+++|+++++||||+|++++++|+|||+||+|||+|+|++.+..|++++++.+++||
T Consensus 241 ~p~lW~p~~P~LY~l~v~l~~-~g~~~d~~~~~~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~ 319 (604)
T PRK10150 241 NPHLWQPGEGYLYTLCVELAK-SGTECDTYPLRFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDH 319 (604)
T ss_pred CCcccCCCCCceEEEEEEEee-CCeeEEEEEeeeEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHH
Confidence 699999999999999999986 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEeeeCcccccCccc------------cccCCCCCCChHHHHHHHHHHH
Q 006933 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYF------------SEHLKHPTMEPSWAAAMMDRVI 148 (625)
Q Consensus 81 ~lmK~~g~NaVRtshyp~~~~fydlcDe~Gl~V~~E~~~e~hG~~~------------~~~~~~~~~dp~~~~~~~~~~~ 148 (625)
++||++|+|+||+||||++++|||+|||+|||||+|+++ +|+.. ...+.....+|+|.++++++++
T Consensus 320 ~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 320 NLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPA--VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccc--ccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 33210 0011112345789999999999
Q ss_pred HHHHHhCCCceEEEEEccCCCCCC-----CcHHHHHHHHHHhCCCCeEeccCCC-------CCCCCCCcccCC-CCc---
Q 006933 149 GMVERDKNHASIICWSLGNEAGHG-----PNHSAAAGWIRGKDPSRLLHYEGGG-------SRTPSTDIVCPM-YMR--- 212 (625)
Q Consensus 149 ~mV~r~kNHPSIi~WslgNE~~~g-----~~~~~~~~~ik~~DptRpv~~~~~~-------~~~~~~Di~s~~-Y~~--- 212 (625)
+||+|+|||||||+||+|||+..+ ..+++|.+++|++||||||+++... .....+|++|.+ |..
T Consensus 398 ~mv~r~~NHPSIi~Ws~gNE~~~~~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~~~~~~~~~~~~Dv~~~N~Y~~wy~ 477 (604)
T PRK10150 398 ELIARDKNHPSVVMWSIANEPASREQGAREYFAPLAELTRKLDPTRPVTCVNVMFATPDTDTVSDLVDVLCLNRYYGWYV 477 (604)
T ss_pred HHHHhccCCceEEEEeeccCCCccchhHHHHHHHHHHHHHhhCCCCceEEEecccCCcccccccCcccEEEEcccceecC
Confidence 999999999999999999998654 3467899999999999999987521 113568999964 321
Q ss_pred ----h--------hHHHHHhhCCCCCCcEEEEecc-------cCcCCCCCc-------HHHHHHHHHhcCCceeEeEecc
Q 006933 213 ----V--------WDIVMIAKDPTETRPLILCEYS-------HAMGNSNGN-------IHEYWEAIDSTFGLQGGFIWDW 266 (625)
Q Consensus 213 ----~--------~~~~~~~~~~~~~kP~i~~Eyg-------ha~gns~g~-------~~~yw~~~~~~p~~~GgfiW~~ 266 (625)
. ..+..+.+.. +||+++|||| |+|+++.++ +++||+.++++|.++|+|||+|
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~--~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~~p~~~G~~iW~~ 555 (604)
T PRK10150 478 DSGDLETAEKVLEKELLAWQEKL--HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDRVPAVVGEQVWNF 555 (604)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhc--CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEEee
Confidence 1 1222333332 8999999999 899999888 8899999999999999999999
Q ss_pred cCCceeeecCCCceeeeecCCCCCCCCCccccccceecCCCCCCccHHHHHHhhccEEE
Q 006933 267 VDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKV 325 (625)
Q Consensus 267 ~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~pk~~~~e~k~~~~pv~~ 325 (625)
+|+.-. .| .+.++|+ .+|||+.||+|||.++++|++|+|+.+
T Consensus 556 ~D~~~~----~g--~~~~~g~-----------~~Gl~~~dr~~k~~~~~~k~~~~~~~~ 597 (604)
T PRK10150 556 ADFATS----QG--ILRVGGN-----------KKGIFTRDRQPKSAAFLLKKRWTGIPF 597 (604)
T ss_pred eccCCC----CC--CcccCCC-----------cceeEcCCCCChHHHHHHHHHhhcCcc
Confidence 995311 11 1234442 589999999999999999999999864
No 5
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=100.00 E-value=1.9e-57 Score=475.73 Aligned_cols=287 Identities=34% Similarity=0.565 Sum_probs=229.9
Q ss_pred EEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEeeeCc
Q 006933 39 VSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEAN 118 (625)
Q Consensus 39 iei~~~~f~lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp~~~~fydlcDe~Gl~V~~E~~ 118 (625)
|||++++|+||||||+|||||+|+++|..|++++++.+++||++||++|+|+||++|||++|+||++|||+||+||+|++
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~ 80 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIP 80 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEecc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccc-cccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCCCCcHHHHHHHHHHhCCCCeEeccCCC
Q 006933 119 IETHGFYF-SEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGG 197 (625)
Q Consensus 119 ~e~hG~~~-~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~~~~~ 197 (625)
.++||... .+....+..+|.|.+.+++++++||+|+|||||||+||+|||+.....++.|.+++|++||||||++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~~~~~~~~~l~~~~k~~DptRpv~~~~~~ 160 (298)
T PF02836_consen 81 LEGHGSWQDFGNCNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNESDYREFLKELYDLVKKLDPTRPVTYASNG 160 (298)
T ss_dssp -BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESSHHHHHHHHHHHHHHHH-TTSEEEEETGT
T ss_pred ccccCccccCCccccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccCccccchhHHHHHHHhcCCCCceeecccc
Confidence 98877431 11111235789999999999999999999999999999999996666788999999999999999988763
Q ss_pred C----CCCCCCcccCCCCc---hhHHHHHhhC--CCCCCcEEEEecccCcCCCCCcHHHHHHHHHhcCCceeEeEecccC
Q 006933 198 S----RTPSTDIVCPMYMR---VWDIVMIAKD--PTETRPLILCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVD 268 (625)
Q Consensus 198 ~----~~~~~Di~s~~Y~~---~~~~~~~~~~--~~~~kP~i~~Eygha~gns~g~~~~yw~~~~~~p~~~GgfiW~~~D 268 (625)
. .....|+++.+|.. ...+..++.. ...+||+|+||||+.+.++.|...++++....++..++.++|.|.+
T Consensus 161 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~kP~i~sEyg~~~~~~~g~~~~~~~~~~~~~~~q~~~~~~~~~ 240 (298)
T PF02836_consen 161 WDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDKPIIISEYGADAYNSKGGDSEYWQLWSWYEEYQGAFIWDYQD 240 (298)
T ss_dssp SGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS-EEEEEESEBBSST-TTHHHHHHHHHHCTTEEEEEESHSBH
T ss_pred cccccccccccccccccCCcccHHHHHHHHHhccccCCCCeEehhccccccccCCCccccccccccCchhhhhhhhhhhh
Confidence 2 11223555556655 3334444432 2348999999999999999999999999999899999999999999
Q ss_pred CceeeecCC-CceeeeecCCCCCCCCCccccccceecCCCCCCccHHHHHHhhccEEE
Q 006933 269 QGLLRELAD-GTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKV 325 (625)
Q Consensus 269 ~~~~~~~~~-g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~pk~~~~e~k~~~~pv~~ 325 (625)
+........ +..++-+|+||...++|..+|.+|||++||+||++++++|++|+||+.
T Consensus 241 ~~~~~~~~~~~g~~~w~~~Df~~~~~~~~~~~nGlv~~dR~pK~~~~~~k~~~~~v~~ 298 (298)
T PF02836_consen 241 QAIQRRDPYVAGEFYWTGFDFGTEPTDYEFEYNGLVDYDRRPKPAYYEYKSQWSPVQA 298 (298)
T ss_dssp HHEEEEETTESEEEEEETTTTSCSSBTGGGGSBESBETTSEBBHHHHHHHHHHHSEEE
T ss_pred hhhccccccccceeeecceEeccCCCCCeeeeccEECCcCCcCHHHHHHHHHhhhhcC
Confidence 877544433 334556789999999999999999999999999999999999999973
No 6
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=100.00 E-value=2.3e-42 Score=356.94 Aligned_cols=151 Identities=40% Similarity=0.727 Sum_probs=126.9
Q ss_pred EE-eCCceEEEEEEcCCCcEEEEEECCEeeeccCcccceEecCCCCCCCCCCcchhhHHHHh------------------
Q 006933 452 QL-SHQNSWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAA------------------ 512 (625)
Q Consensus 452 ~~-~~~~~~~~~fdk~~G~l~~~~~~g~~~l~~~~~~~~wRa~tDND~g~~~~~~~~~W~~a------------------ 512 (625)
+| |++|++ +|||++|.|+||.++|++||.++|++||||||||||++.....+...|+.+
T Consensus 1 tV~g~~f~~--~Fdk~~G~l~s~~~~g~~ll~~~~~~nfwRApTDND~~~~~~~~~~~W~~ag~~~~~~~~~~~~~~~~~ 78 (276)
T PF02929_consen 1 TVSGKDFSY--VFDKKTGTLTSYKYNGKELLKRGPKPNFWRAPTDNDRGIGNPSRAARWKDAGLDRLVTRVRSVKVEESD 78 (276)
T ss_dssp -EEETTEEE--EEETTTTCEEEEEETTEEEECEEEEEE---S--TCCCTTTTSHSCHHHHHTTTTCEEEEEEEEEEEEEE
T ss_pred CCccCCEEE--EEECCCCeEEEEEECCEEeecCCCcccEEeCCCCCccccccchhHHHHHHcCccceeeEEeEEEEEecC
Confidence 47 899999 999999999999999999999999999999999999998887777889998
Q ss_pred --------------------------------------------------------------------------------
Q 006933 513 -------------------------------------------------------------------------------- 512 (625)
Q Consensus 513 -------------------------------------------------------------------------------- 512 (625)
T Consensus 79 ~~~~v~v~~~~~~~~~~~~~~~~~~y~i~~dG~i~v~~~~~~~~~~p~lpRiGl~~~Lp~~~~~v~wyGrGP~EnY~DRk 158 (276)
T PF02929_consen 79 GDVAVTVTARYAAPNKSWNFEVTITYTIYADGTIKVDMTFEPSGDLPELPRIGLQFQLPKSFDNVEWYGRGPHENYPDRK 158 (276)
T ss_dssp SESEEEEEEEEEETTCCEEEEEEEEEEEETTSEEEEEEEEEEETTSSC-SEEEEEEEEETTEEEEEEEEEESS--BTTB-
T ss_pred CCceEEEEEEEeCCCcceEEEEEEEEEEcCCCEEEEEEEEEeCCCCCCccceEEEEEecCcceeEEEECCCCCCCCcccc
Confidence
Q ss_pred --------------------------ccCcceEEEEEeCCcceEEEEecCCCCCeeEEecCCCHHHHhhcCCCCCCCCCC
Q 006933 513 --------------------------ARADVRWVTFQNKEGIGIYASMYSSSPPMQLNASYYTTTELDRATHNEQLVKED 566 (625)
Q Consensus 513 --------------------------nr~dvRw~~l~~~~g~gl~v~~~~~~~~f~fsa~~Yt~e~L~~a~H~~eL~~~~ 566 (625)
||+||||++|++.+|.||+|. ++.+|+|||+|||+++|++|+|.+||++++
T Consensus 159 ~~a~~G~y~~~v~~~~~~Y~~PQE~Gnr~dvrw~~l~~~~g~gl~v~---~~~~~~fsa~~yt~~~L~~a~H~~eL~~~~ 235 (276)
T PF02929_consen 159 TGAFLGIYESTVDDMYTPYIRPQENGNRTDVRWLSLTDSDGGGLLVT---SDDPFSFSASPYTPEELEEAKHTYELPKSD 235 (276)
T ss_dssp SSSEEEEEEEEHHHHS---SS--S---EEEEEEEEEEETTSEEEEEE---EEEEEEEEEESS-HHHHHH-SSGGGSEEES
T ss_pred ccCCcCEEcCcHHHcCcCCCCcccCCCcceeEEEEEEcCCCCeEEEe---cCCCeEEEEEeCchhHhhhcCccccCCCCC
Confidence 999999999999999999998 667899999999999999999999999999
Q ss_pred eEEEEEccccccccCCCCCCcCCCCCccccCccEEEEEEEE
Q 006933 567 KIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAYSFSIRLS 607 (625)
Q Consensus 567 ~~~l~iD~~q~GvGg~~ScGp~~~~~Y~l~~~~y~~~f~l~ 607 (625)
.|+|||||+||||||||||||.+|++|||++++|+|+|+|+
T Consensus 236 ~~~l~lD~~q~GvG~d~ScGp~~~~~Y~l~~~~~~~~f~l~ 276 (276)
T PF02929_consen 236 RTYLNLDYAQRGVGGDNSCGPDVLPEYRLKPKPYEFSFTLR 276 (276)
T ss_dssp EEEEEEEEEE-----STTSS--S-GGGS-CSSEEEEEEEE-
T ss_pred CEEEEEecccCCcccccccCCCCCHHHCcCCccEEEEEEEC
Confidence 99999999999999989999999999999999999999985
No 7
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2.9e-23 Score=220.28 Aligned_cols=180 Identities=19% Similarity=0.228 Sum_probs=143.7
Q ss_pred CCCCCCC---CCCCcEEEEEEEEeCCCCeEEEEEEEEeeEEEEEEC--------C--EEEECCEEEEEEeeecCCCCCCC
Q 006933 1 MPRLWSA---EQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAP--------K--QLLVNGNPVVIRGVNRHEHHPRV 67 (625)
Q Consensus 1 ~p~lWs~---e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~iei~~--------~--~f~lNGkpi~lkGvN~h~~~p~~ 67 (625)
+|..|+| +...||.+++.. .|... +.++|||++|... + -|.+||.|++|||.|+.+.....
T Consensus 278 ~~e~wwp~g~g~q~~y~~~v~~---gg~~~---ekki~frtvelv~~p~kp~~g~nfyfkin~~pvflkg~nwip~s~f~ 351 (867)
T KOG2230|consen 278 EPERWWPNGMGEQKLYDVVVSM---GGQVK---EKKIGFKTVELVQDPKKPEKGRNFYFKINDEPVFLKGTNWIPVSMFR 351 (867)
T ss_pred cccccCCCCCCcceeEEEEEec---Cceee---eeeeeeEEEEEeecCCCCCCCceeEEEEcCcEEEeecCCccChHHHH
Confidence 4678997 778999998876 45544 4499999999862 1 58899999999999998665555
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEc--cCCCChhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHH
Q 006933 68 GKTNIESCMVKDLVLMKQNNINAVRN--SHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMD 145 (625)
Q Consensus 68 G~a~~~e~~~~Dl~lmK~~g~NaVRt--shyp~~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~ 145 (625)
...+-|..+--|+-.+++|||++|+ ...-+.++||++||++||+||+++.+.|.- +| .+.+|.....+
T Consensus 352 -dr~t~~~~~~LL~Sv~e~~MN~lRVWGGGvYEsd~FY~lad~lGilVWQD~MFACAl--------YP-t~~eFl~sv~e 421 (867)
T KOG2230|consen 352 -DRENIAKTEFLLDSVAEVGMNMLRVWGGGVYESDYFYQLADSLGILVWQDMMFACAL--------YP-TNDEFLSSVRE 421 (867)
T ss_pred -hhHHHHHHHHHHHHHHHhCcceEEEecCccccchhHHHHhhhccceehhhhHHHhhc--------cc-CcHHHHHHHHH
Confidence 4577888899999999999999999 333456699999999999999999765432 33 56789999999
Q ss_pred HHHHHHHHhCCCceEEEEEccCCCC-------CCCc---------------HHHHHHHHHHhCCCCeEeccCC
Q 006933 146 RVIGMVERDKNHASIICWSLGNEAG-------HGPN---------------HSAAAGWIRGKDPSRLLHYEGG 196 (625)
Q Consensus 146 ~~~~mV~r~kNHPSIi~WslgNE~~-------~g~~---------------~~~~~~~ik~~DptRpv~~~~~ 196 (625)
+++..+.|.+.|||||+||..||.. ++.. .+.+.++.+.-||+||....+.
T Consensus 422 EV~yn~~Rls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 422 EVRYNAMRLSHHPSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHHHHhhccCCeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 9999999999999999999999983 3321 1235677788999999776543
No 8
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.68 E-value=1e-15 Score=156.70 Aligned_cols=220 Identities=17% Similarity=0.257 Sum_probs=125.0
Q ss_pred EEEEEECCEEE--ECCEEEEEEeeecCCCCCC----C-CCCCCHHHHHHHHHHHHHcCCcEEEccCCC---ChhHHHHHH
Q 006933 37 RQVSKAPKQLL--VNGNPVVIRGVNRHEHHPR----V-GKTNIESCMVKDLVLMKQNNINAVRNSHYP---QHPRWYELC 106 (625)
Q Consensus 37 R~iei~~~~f~--lNGkpi~lkGvN~h~~~p~----~-G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp---~~~~fydlc 106 (625)
-.|+++|..|+ -||++++||||.+++.... . -.-.+.+.+.+|+.+||++|+|+||+.+.- +|+.++.++
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~ 88 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAF 88 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHH
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHH
Confidence 46899999998 7999999999999854321 0 111457899999999999999999995543 478899999
Q ss_pred hhcCCeEeeeCcccccCccccccCCCCCCCh--HHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCCCCc----------
Q 006933 107 DLFGLYMIDEANIETHGFYFSEHLKHPTMEP--SWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPN---------- 174 (625)
Q Consensus 107 De~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp--~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~g~~---------- 174 (625)
.+.||||+.+++..... + ...+| .|...++++...+|....++|.++....|||.-....
T Consensus 89 ~~aGIYvi~Dl~~p~~s------I--~r~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKA 160 (314)
T PF03198_consen 89 ADAGIYVILDLNTPNGS------I--NRSDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKA 160 (314)
T ss_dssp HHTT-EEEEES-BTTBS----------TTS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHH
T ss_pred HhCCCEEEEecCCCCcc------c--cCCCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHH
Confidence 99999999999764221 1 13566 8999999999999999999999999999999976431
Q ss_pred -HHHHHHHHHHhCC-CCeEeccCCCC---------------CCCCCCcccCC-CCch----------hHHHHHhhCCCCC
Q 006933 175 -HSAAAGWIRGKDP-SRLLHYEGGGS---------------RTPSTDIVCPM-YMRV----------WDIVMIAKDPTET 226 (625)
Q Consensus 175 -~~~~~~~ik~~Dp-tRpv~~~~~~~---------------~~~~~Di~s~~-Y~~~----------~~~~~~~~~~~~~ 226 (625)
.+.|.+++|+... +-||-|..++. +...+|+++.+ |... +.+.+.+... .
T Consensus 161 avRD~K~Yi~~~~~R~IPVGYsaaD~~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~Stf~~SGy~~l~~~f~~y--~ 238 (314)
T PF03198_consen 161 AVRDMKAYIKSKGYRSIPVGYSAADDAEIRQDLANYLNCGDDDERIDFFGLNSYEWCGDSTFETSGYDRLTKEFSNY--S 238 (314)
T ss_dssp HHHHHHHHHHHSSS----EEEEE---TTTHHHHHHHTTBTT-----S-EEEEE----SS--HHHHSHHHHHHHHTT---S
T ss_pred HHHHHHHHHHhcCCCCCceeEEccCChhHHHHHHHHhcCCCcccccceeeeccceecCCCccccccHHHHHHHhhCC--C
Confidence 3567778888665 33777764321 12356877764 6432 2233334443 7
Q ss_pred CcEEEEecccCcCCCCCcHHHHHHHHH---hcCCceeEeEecccC
Q 006933 227 RPLILCEYSHAMGNSNGNIHEYWEAID---STFGLQGGFIWDWVD 268 (625)
Q Consensus 227 kP~i~~Eygha~gns~g~~~~yw~~~~---~~p~~~GgfiW~~~D 268 (625)
.|+|++|||--- ..+..+.+-- +++ -.+-+.||++.+|.-
T Consensus 239 vPvffSEyGCn~-~~pR~f~ev~-aly~~~Mt~v~SGGivYEy~~ 281 (314)
T PF03198_consen 239 VPVFFSEYGCNT-VTPRTFTEVP-ALYSPEMTDVWSGGIVYEYFQ 281 (314)
T ss_dssp S-EEEEEE---S-SSS---THHH-HHTSHHHHTTEEEEEES-SB-
T ss_pred CCeEEcccCCCC-CCCccchHhH-HhhCccchhheeceEEEEEec
Confidence 999999998421 1233333321 122 135678999999874
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.48 E-value=4.9e-13 Score=137.89 Aligned_cols=206 Identities=23% Similarity=0.319 Sum_probs=135.0
Q ss_pred ECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcc-----CC-CCh------------hHHHHHHhhc
Q 006933 48 VNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNS-----HY-PQH------------PRWYELCDLF 109 (625)
Q Consensus 48 lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRts-----hy-p~~------------~~fydlcDe~ 109 (625)
.||+++.++|+|.|-. ......++++.||++|+|+||+. .. |.. +.++++|.++
T Consensus 3 ~~G~~v~~~G~n~~w~--------~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~ 74 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWY--------NPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAY 74 (281)
T ss_dssp TTSEBEEEEEEEETTS--------GGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEeeeeecccC--------CCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhC
Confidence 4899999999999821 11268899999999999999991 11 111 3589999999
Q ss_pred CCeEeeeCcccccCccccccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCCCC---------------c
Q 006933 110 GLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP---------------N 174 (625)
Q Consensus 110 Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~g~---------------~ 174 (625)
||+|+.+..-. .++...... ....+...+.+.+.++.++.|+++||.|++|.|.||+.... .
T Consensus 75 gi~vild~h~~-~~w~~~~~~--~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~ 151 (281)
T PF00150_consen 75 GIYVILDLHNA-PGWANGGDG--YGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDW 151 (281)
T ss_dssp T-EEEEEEEES-TTCSSSTST--TTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHH
T ss_pred CCeEEEEeccC-ccccccccc--cccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhH
Confidence 99999876321 112100110 02334445556667999999999999999999999997641 1
Q ss_pred HHHHHHHHHHhCCCCeEeccCCCC----------C---CCCCCcccCC-CCchh------------------HHH---HH
Q 006933 175 HSAAAGWIRGKDPSRLLHYEGGGS----------R---TPSTDIVCPM-YMRVW------------------DIV---MI 219 (625)
Q Consensus 175 ~~~~~~~ik~~DptRpv~~~~~~~----------~---~~~~Di~s~~-Y~~~~------------------~~~---~~ 219 (625)
.+++++.||+.||+++|..++... . ....++++.| |.... .+. .+
T Consensus 152 ~~~~~~~Ir~~~~~~~i~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (281)
T PF00150_consen 152 YQRAIDAIRAADPNHLIIVGGGGWGADPDGAAADNPNDADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNW 231 (281)
T ss_dssp HHHHHHHHHHTTSSSEEEEEEHHHHTBHHHHHHHSTTTTTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcceeecCCCccccccchhhhcCcccccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHH
Confidence 357789999999999998765210 0 1234566665 54211 111 22
Q ss_pred hhCCCCCCcEEEEecccCcCCCC---CcHHHHHHHHHhcCCceeEeEecccC
Q 006933 220 AKDPTETRPLILCEYSHAMGNSN---GNIHEYWEAIDSTFGLQGGFIWDWVD 268 (625)
Q Consensus 220 ~~~~~~~kP~i~~Eygha~gns~---g~~~~yw~~~~~~p~~~GgfiW~~~D 268 (625)
... .++|++++|||....... .....+.+.+.++ .+|.+.|+|..
T Consensus 232 ~~~--~g~pv~~gE~G~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~W~~~~ 279 (281)
T PF00150_consen 232 AKK--NGKPVVVGEFGWSNNDGNGSTDYADAWLDYLEQN--GIGWIYWSWKP 279 (281)
T ss_dssp HHH--TTSEEEEEEEESSTTTSCHHHHHHHHHHHHHHHT--TCEEEECEESS
T ss_pred HHH--cCCeEEEeCcCCcCCCCCcCHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 222 368999999998643331 2233455666555 56889998753
No 10
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.28 E-value=4.5e-11 Score=129.44 Aligned_cols=227 Identities=23% Similarity=0.303 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccCC------CC--------hhHHHHHHhhcCCeEeeeCcccc---------------
Q 006933 71 NIESCMVKDLVLMKQNNINAVRNSHY------PQ--------HPRWYELCDLFGLYMIDEANIET--------------- 121 (625)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NaVRtshy------p~--------~~~fydlcDe~Gl~V~~E~~~e~--------------- 121 (625)
.++|.+++||++||++|+|+||+... |. -+.++++|.++||.|+...+...
T Consensus 7 ~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~ 86 (374)
T PF02449_consen 7 WPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPV 86 (374)
T ss_dssp S-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhccccccc
Confidence 35699999999999999999997332 22 14689999999999996443110
Q ss_pred --cCcc-ccc-cCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCCC-C-----------------------
Q 006933 122 --HGFY-FSE-HLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHG-P----------------------- 173 (625)
Q Consensus 122 --hG~~-~~~-~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~g-~----------------------- 173 (625)
.|.. ..+ ......++|.+++.+.+-++++++|+++||+|++|.+.||.++. +
T Consensus 87 ~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY~ti~~L 166 (374)
T PF02449_consen 87 DADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKYGTIEAL 166 (374)
T ss_dssp -TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHHSSHHHH
T ss_pred CCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHhCCHHHH
Confidence 1100 000 01112468899999999999999999999999999999997541 0
Q ss_pred -----------------------------c------------------HHHHHHHHHHhCCCCeEeccCCCC-----C--
Q 006933 174 -----------------------------N------------------HSAAAGWIRGKDPSRLLHYEGGGS-----R-- 199 (625)
Q Consensus 174 -----------------------------~------------------~~~~~~~ik~~DptRpv~~~~~~~-----~-- 199 (625)
+ +..+.+.||+.||.+||+....+. +
T Consensus 167 N~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~~~~d~~ 246 (374)
T PF02449_consen 167 NRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSWFNGIDYF 246 (374)
T ss_dssp HHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT---SS-HH
T ss_pred HHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCccccccCcCCHH
Confidence 0 235678899999999998542211 1
Q ss_pred --CCCCCcccCC-CCc---------hhH---HHHHhhCCCCCCcEEEEecccCcCC--------CCCcHH-HHHHHHHhc
Q 006933 200 --TPSTDIVCPM-YMR---------VWD---IVMIAKDPTETRPLILCEYSHAMGN--------SNGNIH-EYWEAIDST 255 (625)
Q Consensus 200 --~~~~Di~s~~-Y~~---------~~~---~~~~~~~~~~~kP~i~~Eygha~gn--------s~g~~~-~yw~~~~~~ 255 (625)
....|+++.. |+. ... ..........+||++++|.-....| .+|.+. ..|..+..
T Consensus 247 ~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~~~~~~~A~- 325 (374)
T PF02449_consen 247 KWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGELRLWSWQAIAH- 325 (374)
T ss_dssp HHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--SSSSS-----TTHHHHHHHHHHHT-
T ss_pred HHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCCCCCCccCCCCCCCCHHHHHHHHHHHH-
Confidence 2356877763 554 000 0111111134899999999422111 123332 34455443
Q ss_pred CCceeEeEecccCCceeeecCCCceeeeecCCCCCCCCCccccccceecCCC-CCCccHHHHHHhhc
Q 006933 256 FGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDR-TPHPALHEVKYVYQ 321 (625)
Q Consensus 256 p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr-~pk~~~~e~k~~~~ 321 (625)
+..|...|.|-.. ..|.+ .-..|||+.|. +|...+.|++++-+
T Consensus 326 -Ga~~i~~~~wr~~------~~g~E----------------~~~~g~~~~dg~~~~~~~~e~~~~~~ 369 (374)
T PF02449_consen 326 -GADGILFWQWRQS------RFGAE----------------QFHGGLVDHDGREPTRRYREVAQLGR 369 (374)
T ss_dssp -T-S-EEEC-SB--------SSSTT----------------TTS--SB-TTS--B-HHHHHHHHHHH
T ss_pred -hCCeeEeeeccCC------CCCch----------------hhhcccCCccCCCCCcHHHHHHHHHH
Confidence 5567777777431 12221 11369999999 99999999998754
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=99.25 E-value=1.2e-09 Score=125.51 Aligned_cols=187 Identities=16% Similarity=0.120 Sum_probs=129.6
Q ss_pred EEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc-----cCCCCh-----------hH
Q 006933 38 QVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-----SHYPQH-----------PR 101 (625)
Q Consensus 38 ~iei~~~~f~lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRt-----shyp~~-----------~~ 101 (625)
.|+++++.|+|||+|++|.+...|.+ .++++.++..|+.||++|+|+|=| .|-|.. .+
T Consensus 29 ~v~~d~~~f~idG~p~~i~sG~iHY~------R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~ 102 (840)
T PLN03059 29 SVSYDHRAFIINGQRRILISGSIHYP------RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVK 102 (840)
T ss_pred EEEEeCCEEEECCEEEEEEEeCcccC------cCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHH
Confidence 68999999999999999999999954 278999999999999999999998 666663 46
Q ss_pred HHHHHhhcCCeEeeeC------cccccCcccc----ccCCCCCCChHHHHHHHHHHHHHHHHh-------CCCceEEEEE
Q 006933 102 WYELCDLFGLYMIDEA------NIETHGFYFS----EHLKHPTMEPSWAAAMMDRVIGMVERD-------KNHASIICWS 164 (625)
Q Consensus 102 fydlcDe~Gl~V~~E~------~~e~hG~~~~----~~~~~~~~dp~~~~~~~~~~~~mV~r~-------kNHPSIi~Ws 164 (625)
|+++|.|.||||+.-. -++..|+..+ ..+...++||.|.++..+.+.+++.+. .|--.|||-.
T Consensus 103 Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQ 182 (840)
T PLN03059 103 FIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182 (840)
T ss_pred HHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEE
Confidence 9999999999999533 2333444322 123445789999987766666666655 4555799999
Q ss_pred ccCCCCCC------C---cHHHHHHHHHHhCCCCeEeccCCCCCCCCCCcccCCCCchhHHHHHhhCCCCCCcEEEEecc
Q 006933 165 LGNEAGHG------P---NHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETRPLILCEYS 235 (625)
Q Consensus 165 lgNE~~~g------~---~~~~~~~~ik~~DptRpv~~~~~~~~~~~~Di~s~~Y~~~~~~~~~~~~~~~~kP~i~~Eyg 235 (625)
+.||.+.. . .++.+.+.+++..-+-|.....+. . ..-+++...... ..+.+ ......+|++.+||=
T Consensus 183 IENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~-~-~~~~v~~t~Ng~--~~~~f-~~~~~~~P~m~tE~w 257 (840)
T PLN03059 183 IENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQE-D-APDPVIDTCNGF--YCENF-KPNKDYKPKMWTEAW 257 (840)
T ss_pred ecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCC-C-CCccceecCCCc--hhhhc-ccCCCCCCcEEeccC
Confidence 99999852 2 356777777887777676554331 1 111222111111 11122 222335899999984
No 12
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=99.17 E-value=6.6e-10 Score=117.48 Aligned_cols=144 Identities=23% Similarity=0.260 Sum_probs=96.1
Q ss_pred EEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc-----cCCCCh-----------hHHHHHHhh
Q 006933 45 QLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-----SHYPQH-----------PRWYELCDL 108 (625)
Q Consensus 45 ~f~lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRt-----shyp~~-----------~~fydlcDe 108 (625)
+|+|||||++|-+...|.+ .++++.|+..|+.||++|+|+|-| .|-|.. ..|+++|.+
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~------r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~ 74 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYF------RIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQE 74 (319)
T ss_dssp CEEETTEEE-EEEEEE-GG------GS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHH
T ss_pred CeEECCEEEEEEEeeeccc------cCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHH
Confidence 4899999999999999966 377999999999999999999999 454442 479999999
Q ss_pred cCCeEeeeC------cccccCcccc----ccCCCCCCChHHHHHHHHHHHHHHHHhC-----CCceEEEEEccCCCCCCC
Q 006933 109 FGLYMIDEA------NIETHGFYFS----EHLKHPTMEPSWAAAMMDRVIGMVERDK-----NHASIICWSLGNEAGHGP 173 (625)
Q Consensus 109 ~Gl~V~~E~------~~e~hG~~~~----~~~~~~~~dp~~~~~~~~~~~~mV~r~k-----NHPSIi~WslgNE~~~g~ 173 (625)
.||+|+.-. -++..|+..+ ..+...++||.|.+++.+.++.+....+ +--.||+-.+.||.+...
T Consensus 75 ~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~~ 154 (319)
T PF01301_consen 75 NGLYVILRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSYG 154 (319)
T ss_dssp TT-EEEEEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCTS
T ss_pred cCcEEEecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCCc
Confidence 999999543 1122232211 1233457899998887776666665544 334699999999998543
Q ss_pred ----cHHHHHHHHHHhCCCCeEecc
Q 006933 174 ----NHSAAAGWIRGKDPSRLLHYE 194 (625)
Q Consensus 174 ----~~~~~~~~ik~~DptRpv~~~ 194 (625)
.++.+.+..++.=++-++.+.
T Consensus 155 ~~~~Y~~~l~~~~~~~g~~~~~~~t 179 (319)
T PF01301_consen 155 TDRAYMEALKDAYRDWGIDPVLLYT 179 (319)
T ss_dssp S-HHHHHHHHHHHHHTT-SSSBEEE
T ss_pred ccHhHHHHHHHHHHHhhCccceeec
Confidence 245666666665555444443
No 13
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=2.4e-09 Score=113.90 Aligned_cols=238 Identities=17% Similarity=0.184 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEccCCC-----------C-------hhHHHHHHhhcCCeEeeeC-c-cc-ccCcc---cc
Q 006933 72 IESCMVKDLVLMKQNNINAVRNSHYP-----------Q-------HPRWYELCDLFGLYMIDEA-N-IE-THGFY---FS 127 (625)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NaVRtshyp-----------~-------~~~fydlcDe~Gl~V~~E~-~-~e-~hG~~---~~ 127 (625)
-.+.+++|++.|+.+|++.+|.+.-- + -.+|++.|.+++|.|..-. . +. -.|+. ++
T Consensus 24 ~~~ei~~dle~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipw 103 (587)
T COG3934 24 GNREIKADLEPAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPW 103 (587)
T ss_pred hhhhhhcccccccCccceeEEEEEecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeec
Confidence 35678899999999999999997211 1 1469999999999997533 1 10 01110 01
Q ss_pred c---cCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCC-----CCc----HHHHHHHHHHhCCCCeEeccC
Q 006933 128 E---HLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGH-----GPN----HSAAAGWIRGKDPSRLLHYEG 195 (625)
Q Consensus 128 ~---~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~-----g~~----~~~~~~~ik~~DptRpv~~~~ 195 (625)
. ....-..||.++..+.+.+..+|+-+|-||.|..|.+.||+-. +.+ ..+|+.+||.+||.++|+...
T Consensus 104 ag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD 183 (587)
T COG3934 104 AGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGD 183 (587)
T ss_pred CCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCC
Confidence 0 0011136888999999999999999999999999999999533 222 368999999999999998544
Q ss_pred CCCC---------CCCCCcccCC-CC---chh-------HHHHHhhCCC--CCCcEEEEecccCc--CCCCCcHHHHHHH
Q 006933 196 GGSR---------TPSTDIVCPM-YM---RVW-------DIVMIAKDPT--ETRPLILCEYSHAM--GNSNGNIHEYWEA 251 (625)
Q Consensus 196 ~~~~---------~~~~Di~s~~-Y~---~~~-------~~~~~~~~~~--~~kP~i~~Eygha~--gns~g~~~~yw~~ 251 (625)
..+. ...+|.-++| |+ ... ..+.+++... .-+|+++.|||.+- |.+.-....-|..
T Consensus 184 ~~sp~~~~~pyN~r~~vDya~~hLY~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayfiw~~ 263 (587)
T COG3934 184 PASPWPQYAPYNARFYVDYAANHLYRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYFIWIR 263 (587)
T ss_pred cCCcccccCCcccceeeccccchhhhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhhhhhh
Confidence 3220 1235655544 42 111 0111222111 13899999999653 2221112222332
Q ss_pred HHhcCCceeEeEecccCCceeeecCCCceeeeecCCCCCCCCCccccccceecCCCCCCccHHHHHHhhcc
Q 006933 252 IDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQA 322 (625)
Q Consensus 252 ~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~pk~~~~e~k~~~~p 322 (625)
..-.-.-.|+.||++.|+.+...++. +.|+ |...+| |||..|..++-.+.++++..+.
T Consensus 264 lal~~ggdGaLiwclsdf~~gsdd~e----y~w~------p~el~f---giIradgpek~~a~~~~~fsn~ 321 (587)
T COG3934 264 LALDTGGDGALIWCLSDFHLGSDDSE----YTWG------PMELEF---GIIRADGPEKIDAMTLHIFSNN 321 (587)
T ss_pred hHHhhcCCceEEEEecCCccCCCCCC----Cccc------ccccee---eeecCCCchhhhHHHHHHhccc
Confidence 21122345889999999875433222 1121 333333 8999999999999999887654
No 14
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=4.7e-08 Score=111.03 Aligned_cols=127 Identities=20% Similarity=0.220 Sum_probs=94.1
Q ss_pred ECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc------cCCCC---------hhHHHHHH
Q 006933 42 APKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN------SHYPQ---------HPRWYELC 106 (625)
Q Consensus 42 ~~~~f~lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRt------shyp~---------~~~fydlc 106 (625)
+...+.+.|+++++.|.++|+.. ++++.+.+||+.||++|+|+||+ .|-|. |..|++++
T Consensus 4 ~~~~~~~dg~~~~l~gG~y~p~~------~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~~~D~~~l~~a 77 (673)
T COG1874 4 DGYSFIRDGRRILLYGGDYYPER------WPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFTWLDEIFLERA 77 (673)
T ss_pred cccceeeCCceeEEeccccChHH------CCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcccchHHHHHHH
Confidence 45678999999999999998653 66799999999999999999999 45554 34489999
Q ss_pred hhcCCeEeeeC-c------ccccCccc------c-------ccCCCCCCChHHHHHHHHHHHHHHHH-hCCCceEEEEEc
Q 006933 107 DLFGLYMIDEA-N------IETHGFYF------S-------EHLKHPTMEPSWAAAMMDRVIGMVER-DKNHASIICWSL 165 (625)
Q Consensus 107 De~Gl~V~~E~-~------~e~hG~~~------~-------~~~~~~~~dp~~~~~~~~~~~~mV~r-~kNHPSIi~Wsl 165 (625)
.+.||+|+.-. | +..+++.. . ..-+.....+-+++.....++.+.+| +.|||+|++|.+
T Consensus 78 ~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~ 157 (673)
T COG1874 78 YKAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQN 157 (673)
T ss_pred HhcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEc
Confidence 99999999766 4 11122110 0 00011234555666666667778888 999999999999
Q ss_pred cCCCCC-CCc
Q 006933 166 GNEAGH-GPN 174 (625)
Q Consensus 166 gNE~~~-g~~ 174 (625)
.||.+. ++.
T Consensus 158 dneY~~~~~~ 167 (673)
T COG1874 158 DNEYGGHPCY 167 (673)
T ss_pred cCccCCcccc
Confidence 999987 443
No 15
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.32 E-value=1.1e-05 Score=82.99 Aligned_cols=189 Identities=16% Similarity=0.132 Sum_probs=114.5
Q ss_pred hHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCCC-------
Q 006933 100 PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHG------- 172 (625)
Q Consensus 100 ~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~g------- 172 (625)
+.+++.|.+.||.|---. +-+|...+ ..+.. ...++..+++.+++++++.|++.- |..|.+.||+-..
T Consensus 19 D~~~~~a~~~gi~v~gH~-l~W~~~~P-~W~~~-~~~~~~~~~~~~~i~~v~~ry~g~--i~~wdV~NE~~~~~~~~~~~ 93 (254)
T smart00633 19 DAIVNFAKENGIKVRGHT-LVWHSQTP-DWVFN-LSKETLLARLENHIKTVVGRYKGK--IYAWDVVNEALHDNGSGLRR 93 (254)
T ss_pred HHHHHHHHHCCCEEEEEE-EeecccCC-Hhhhc-CCHHHHHHHHHHHHHHHHHHhCCc--ceEEEEeeecccCCCccccc
Confidence 457777777777773211 10111000 11100 123455677888999999999855 8889999997421
Q ss_pred ---------CcHHHHHHHHHHhCCCCeEeccCCCC-------------------CCCCCCcccC--C----CCchhHHHH
Q 006933 173 ---------PNHSAAAGWIRGKDPSRLLHYEGGGS-------------------RTPSTDIVCP--M----YMRVWDIVM 218 (625)
Q Consensus 173 ---------~~~~~~~~~ik~~DptRpv~~~~~~~-------------------~~~~~Di~s~--~----Y~~~~~~~~ 218 (625)
..+....+++|+.||+-.+.+..-+. .....|.++. | +++...+.+
T Consensus 94 ~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~ 173 (254)
T smart00633 94 SVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRA 173 (254)
T ss_pred chHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHH
Confidence 12456788999999975554432100 0012454543 2 244455544
Q ss_pred HhhCC-CCCCcEEEEecccCcCCCCC----cHHHHHHHHHhcCCceeEeEecccCCceeeecCCCceeeeecCCCCCCCC
Q 006933 219 IAKDP-TETRPLILCEYSHAMGNSNG----NIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPN 293 (625)
Q Consensus 219 ~~~~~-~~~kP~i~~Eygha~gns~g----~~~~yw~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~~~~ 293 (625)
.++.. ..++|+.+||+......+.. .++++.+.+.++|.+.|-++|.|.|..... +
T Consensus 174 ~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~d~~~W~------------------~- 234 (254)
T smart00633 174 ALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGVTDKYSWL------------------D- 234 (254)
T ss_pred HHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCccCCccc------------------C-
Confidence 33321 12899999999865443211 256777888899999999999988842110 0
Q ss_pred CccccccceecCCCCCCccHHH
Q 006933 294 DLNFCLNGLLWPDRTPHPALHE 315 (625)
Q Consensus 294 d~~f~~~Glv~~dr~pk~~~~e 315 (625)
+ ..-||++.|.+|||+|+.
T Consensus 235 ~---~~~~L~d~~~~~kpa~~~ 253 (254)
T smart00633 235 G---GAPLLFDANYQPKPAYWA 253 (254)
T ss_pred C---CCceeECCCCCCChhhhc
Confidence 0 113899999999999874
No 16
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.22 E-value=2.1e-05 Score=75.40 Aligned_cols=118 Identities=13% Similarity=0.223 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEc--------cCCCCh--------------hHHHHHHhhcCCeEeeeCcccccCccc
Q 006933 69 KTNIESCMVKDLVLMKQNNINAVRN--------SHYPQH--------------PRWYELCDLFGLYMIDEANIETHGFYF 126 (625)
Q Consensus 69 ~a~~~e~~~~Dl~lmK~~g~NaVRt--------shyp~~--------------~~fydlcDe~Gl~V~~E~~~e~hG~~~ 126 (625)
...++++++++++.||++||++|=+ .-||.. +.++++||++||.|+..++.... +
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~-~-- 91 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPD-Y-- 91 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCch-h--
Confidence 4589999999999999999999833 223321 46899999999999998864211 1
Q ss_pred cccCCCCCCChHHHHHHHH-HHHHHHHHhCCCceEEEEEccCCCCCCC-----cHHHHHHHHHHhCCCCeEecc
Q 006933 127 SEHLKHPTMEPSWAAAMMD-RVIGMVERDKNHASIICWSLGNEAGHGP-----NHSAAAGWIRGKDPSRLLHYE 194 (625)
Q Consensus 127 ~~~~~~~~~dp~~~~~~~~-~~~~mV~r~kNHPSIi~WslgNE~~~g~-----~~~~~~~~ik~~DptRpv~~~ 194 (625)
.. ..+++|...... -+.++..++.+|||.-.|=+-.|..... .++.+..++|++.|..||..+
T Consensus 92 ---w~--~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~~~~~~~~~~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 92 ---WD--QGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYNWNAPERFALLGKYLKQISPGKPVMIS 160 (166)
T ss_pred ---hh--ccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcccchHHHHHHHHHHHHHhCCCCCeEEe
Confidence 11 256666333322 3677778899999999999999997543 356788899999998888743
No 17
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.00016 Score=81.02 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=100.8
Q ss_pred EEEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc-----cCCCCh-----------h
Q 006933 37 RQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-----SHYPQH-----------P 100 (625)
Q Consensus 37 R~iei~~~~f~lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRt-----shyp~~-----------~ 100 (625)
..|..++..|.+||+|..+-+...|... .++|.+...|+.+|++|+|+|-| -|-|.. .
T Consensus 18 ~~v~yd~~~~~idG~r~~~isGsIHY~R------~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~Dlv 91 (649)
T KOG0496|consen 18 FNVTYDKRSLLIDGQRFILISGSIHYPR------STPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLV 91 (649)
T ss_pred eEEeccccceeecCCeeEEEEecccccc------CChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHH
Confidence 4566678999999999999999999553 78999999999999999999999 566653 4
Q ss_pred HHHHHHhhcCCeEeeeC------cccccCccc----cccCCCCCCChHHHHHHHHHHHHHHHH-----hCCCceEEEEEc
Q 006933 101 RWYELCDLFGLYMIDEA------NIETHGFYF----SEHLKHPTMEPSWAAAMMDRVIGMVER-----DKNHASIICWSL 165 (625)
Q Consensus 101 ~fydlcDe~Gl~V~~E~------~~e~hG~~~----~~~~~~~~~dp~~~~~~~~~~~~mV~r-----~kNHPSIi~Wsl 165 (625)
.|+.+|.+.||||+.-+ -++--|+.. ...+...++++.|..++..-++.+|.+ .+|---||+=.+
T Consensus 92 kFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QI 171 (649)
T KOG0496|consen 92 KFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQI 171 (649)
T ss_pred HHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 69999999999998543 222223321 111223468888887766655555542 457778999999
Q ss_pred cCCCCCCCcHHHHHHHHHHh
Q 006933 166 GNEAGHGPNHSAAAGWIRGK 185 (625)
Q Consensus 166 gNE~~~g~~~~~~~~~ik~~ 185 (625)
.||.+ ....++.+..|++
T Consensus 172 ENEYG--~~~~~~~~~~k~y 189 (649)
T KOG0496|consen 172 ENEYG--NYLRALGAEGKSY 189 (649)
T ss_pred echhh--HHHHHHHHHHHHh
Confidence 99998 2333444444443
No 18
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=98.05 E-value=5.6e-06 Score=70.90 Aligned_cols=60 Identities=27% Similarity=0.368 Sum_probs=37.3
Q ss_pred HHHHhCCCceEEEEEccCC-CCC-C--------C--------cHHHHHHHHHHhCCCCeEeccCCCCC--------CCCC
Q 006933 150 MVERDKNHASIICWSLGNE-AGH-G--------P--------NHSAAAGWIRGKDPSRLLHYEGGGSR--------TPST 203 (625)
Q Consensus 150 mV~r~kNHPSIi~WslgNE-~~~-g--------~--------~~~~~~~~ik~~DptRpv~~~~~~~~--------~~~~ 203 (625)
+|.++++||.|++|.|+|| .+. + . -++++.+++|++||++||+....... ...+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~~~~~~~~~~~~~~ 80 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGFWGGDWEDLEQLQAENL 80 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B--S-TTHHHHS--TT-
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeecccCCHHHHHHhchhcC
Confidence 4889999999999999999 441 1 0 15788999999999999986432211 2457
Q ss_pred CcccCC
Q 006933 204 DIVCPM 209 (625)
Q Consensus 204 Di~s~~ 209 (625)
|+++.|
T Consensus 81 DvisfH 86 (88)
T PF12876_consen 81 DVISFH 86 (88)
T ss_dssp SSEEB-
T ss_pred CEEeee
Confidence 777765
No 19
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.01 E-value=5.8e-05 Score=79.03 Aligned_cols=178 Identities=17% Similarity=0.148 Sum_probs=93.3
Q ss_pred ECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCC----------------------------h
Q 006933 48 VNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQ----------------------------H 99 (625)
Q Consensus 48 lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp~----------------------------~ 99 (625)
-+|+|++.-|-..... . ...+.+.++.=|+..|+.|||.||+.-.|. .
T Consensus 8 ~dG~Pff~lgdT~W~~---~-~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N 83 (289)
T PF13204_consen 8 ADGTPFFWLGDTAWSL---F-HRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPN 83 (289)
T ss_dssp TTS-B--EEEEE-TTH---H-HH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT--
T ss_pred CCCCEEeehhHHHHHH---h-hCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCC
Confidence 5999999999665321 1 235678888889999999999999932221 0
Q ss_pred -------hHHHHHHhhcCCeEeeeCcccccCccccccCCCCC-CChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCC-C
Q 006933 100 -------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPT-MEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA-G 170 (625)
Q Consensus 100 -------~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~-~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~-~ 170 (625)
++.++.+.++||++-.-. .||..... -.+.. ....-.+.....++-+|+|++.-|.|| |+++||. .
T Consensus 84 ~~YF~~~d~~i~~a~~~Gi~~~lv~---~wg~~~~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~gd~~~ 158 (289)
T PF13204_consen 84 PAYFDHLDRRIEKANELGIEAALVP---FWGCPYVP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVI-WILGGDYFD 158 (289)
T ss_dssp --HHHHHHHHHHHHHHTT-EEEEES---S-HHHHH--------TTSS-HHHHHHHHHHHHHHHTT-SSEE-EEEESSS--
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEE---EECCcccc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCE-EEecCccCC
Confidence 235888889999995332 23211000 00000 011124556677999999999999988 9999999 2
Q ss_pred CCC---cHHHHHHHHHHhCCCCeEeccCCCC--------CCCCCCcccC---C--C--CchhHH---HHHhhCCCCCCcE
Q 006933 171 HGP---NHSAAAGWIRGKDPSRLLHYEGGGS--------RTPSTDIVCP---M--Y--MRVWDI---VMIAKDPTETRPL 229 (625)
Q Consensus 171 ~g~---~~~~~~~~ik~~DptRpv~~~~~~~--------~~~~~Di~s~---~--Y--~~~~~~---~~~~~~~~~~kP~ 229 (625)
... ..++|.+.||+.||..|+++...+. +.+-.|+.+. | + .....+ ..+.. .+.||+
T Consensus 159 ~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh~~~~~~~~~~~~~~~~~~~--~p~KPv 236 (289)
T PF13204_consen 159 TEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGHNRYDQDNWYYLPEEFDYRR--KPVKPV 236 (289)
T ss_dssp TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S--TT--THHHH--HHHHTS--SS---E
T ss_pred CCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCCCcccchHHHHHhhhhhhhh--CCCCCE
Confidence 222 3578999999999987887654321 1233566543 1 1 111222 12232 358999
Q ss_pred EEEeccc
Q 006933 230 ILCEYSH 236 (625)
Q Consensus 230 i~~Eygh 236 (625)
|..|.+-
T Consensus 237 in~Ep~Y 243 (289)
T PF13204_consen 237 INGEPCY 243 (289)
T ss_dssp EESS---
T ss_pred EcCcccc
Confidence 9999963
No 20
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.72 E-value=0.00057 Score=72.54 Aligned_cols=218 Identities=19% Similarity=0.257 Sum_probs=114.5
Q ss_pred HHHHHHHHcCCcEEEc--cCCCCh------hH---HHHHHhhcCCeEeeeCcccccCccccccC----CCCC-CChHHHH
Q 006933 78 KDLVLMKQNNINAVRN--SHYPQH------PR---WYELCDLFGLYMIDEANIETHGFYFSEHL----KHPT-MEPSWAA 141 (625)
Q Consensus 78 ~Dl~lmK~~g~NaVRt--shyp~~------~~---fydlcDe~Gl~V~~E~~~e~hG~~~~~~~----~~~~-~dp~~~~ 141 (625)
.-+++||++|+|+||. .+.|.+ +. ....+.++||.|+.++.. +.-|...+.- .|.. +..+...
T Consensus 28 d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHY-SD~WaDPg~Q~~P~aW~~~~~~~l~~ 106 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHY-SDFWADPGKQNKPAAWANLSFDQLAK 106 (332)
T ss_dssp -HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-S-SSS--BTTB-B--TTCTSSSHHHHHH
T ss_pred CHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecc-cCCCCCCCCCCCCccCCCCCHHHHHH
Confidence 4578999999999998 555554 23 455567899999988731 0001100110 1222 3456677
Q ss_pred HHHHHHHHHHHHhCCCc-eEEEEEccCCCCCC--------Cc-------HHHHHHHHHHhCCCCeE--eccCCCC-----
Q 006933 142 AMMDRVIGMVERDKNHA-SIICWSLGNEAGHG--------PN-------HSAAAGWIRGKDPSRLL--HYEGGGS----- 198 (625)
Q Consensus 142 ~~~~~~~~mV~r~kNHP-SIi~WslgNE~~~g--------~~-------~~~~~~~ik~~DptRpv--~~~~~~~----- 198 (625)
++.++.++++...++.- .+=|+++|||...| .+ +.+.++.||+.+|+-.| |...++.
T Consensus 107 ~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~ 186 (332)
T PF07745_consen 107 AVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYR 186 (332)
T ss_dssp HHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHH
Confidence 88888999998877554 46688999999643 22 34557889999997554 4443321
Q ss_pred --------CCCCCCcccCC-CCc----hhHHH----HHhhCCCCCCcEEEEecccCcC--------CCC-----------
Q 006933 199 --------RTPSTDIVCPM-YMR----VWDIV----MIAKDPTETRPLILCEYSHAMG--------NSN----------- 242 (625)
Q Consensus 199 --------~~~~~Di~s~~-Y~~----~~~~~----~~~~~~~~~kP~i~~Eygha~g--------ns~----------- 242 (625)
.....|+++.. |+. ...+. .....+ +||++++|.+.... |..
T Consensus 187 ~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry--~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~ 264 (332)
T PF07745_consen 187 WFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRY--GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPA 264 (332)
T ss_dssp HHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHH--T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-S
T ss_pred HHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHh--CCeeEEEeccccccccccccccccCccccccCCCCC
Confidence 12346887764 543 22222 222233 79999999985432 211
Q ss_pred --CcH----HHHHHHHHhc--CCceeEeEec--ccCCceeeecCCCceeeeecCCCCCCCCCcc-ccccceecCCCCCCc
Q 006933 243 --GNI----HEYWEAIDST--FGLQGGFIWD--WVDQGLLRELADGTKHWAYGGDFGDTPNDLN-FCLNGLLWPDRTPHP 311 (625)
Q Consensus 243 --g~~----~~yw~~~~~~--p~~~GgfiW~--~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~-f~~~Glv~~dr~pk~ 311 (625)
.+. ++..+.+... .+..|-|.|+ |.-.. .+ +.++ .++ ....+|+|...++-|
T Consensus 265 t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWeP~w~~~~------~~---~~~~--------~g~~w~n~~lFD~~g~~l~ 327 (332)
T PF07745_consen 265 TPQGQADFLRDLINAVKNVPNGGGLGVFYWEPAWIPVE------NG---WDWG--------GGSSWDNQALFDFNGNALP 327 (332)
T ss_dssp SHHHHHHHHHHHHHHHHTS--TTEEEEEEE-TT-GGGT------TH---HHHT--------TTSSSSBGSSB-TTSBB-G
T ss_pred CHHHHHHHHHHHHHHHHHhccCCeEEEEeeccccccCC------cc---cccC--------CCCCccccccCCCCCCCch
Confidence 122 3344555554 4788999995 33211 10 0011 011 112388888888888
Q ss_pred cHHH
Q 006933 312 ALHE 315 (625)
Q Consensus 312 ~~~e 315 (625)
++..
T Consensus 328 sl~~ 331 (332)
T PF07745_consen 328 SLDV 331 (332)
T ss_dssp GGGH
T ss_pred Hhhc
Confidence 7753
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.30 E-value=0.0042 Score=66.03 Aligned_cols=232 Identities=17% Similarity=0.125 Sum_probs=133.6
Q ss_pred CCCCCCCHHHHHHH--HHHHHHcCCcEEEcc-------CCC--------ChhHHHHHHhhcCCeEeeeCcccccCccccc
Q 006933 66 RVGKTNIESCMVKD--LVLMKQNNINAVRNS-------HYP--------QHPRWYELCDLFGLYMIDEANIETHGFYFSE 128 (625)
Q Consensus 66 ~~G~a~~~e~~~~D--l~lmK~~g~NaVRts-------hyp--------~~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~ 128 (625)
..|.+++...+..+ .+.+-...||.|=.. ..| ..+.+++.|.+.||.|--=.-+ +|...+ .
T Consensus 11 ~~G~av~~~~~~~~~~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~~D~~~~~a~~~g~~vrGH~Lv-W~~~~P-~ 88 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDPRYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFESADAILDWARENGIKVRGHTLV-WHSQTP-D 88 (320)
T ss_dssp EEEEEEBGGGHTHHHHHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HHHHHHHHHHHHTT-EEEEEEEE-ESSSS--H
T ss_pred CEEEEechhHcCCcHHHHHHHHHhCCeeeeccccchhhhcCCCCccCccchhHHHHHHHhcCcceeeeeEE-Eccccc-c
Confidence 34555555555543 444444567777552 111 2367999999999988643211 122111 0
Q ss_pred cCCCC-CCCh----HHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCCCC------------------cHHHHHHHHHHh
Q 006933 129 HLKHP-TMEP----SWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP------------------NHSAAAGWIRGK 185 (625)
Q Consensus 129 ~~~~~-~~dp----~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~g~------------------~~~~~~~~ik~~ 185 (625)
.+... ..++ ..+..+.+++++++.|+++...|..|.+-||+-.+. ....+.+++|+.
T Consensus 89 w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~ 168 (320)
T PF00331_consen 89 WVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREA 168 (320)
T ss_dssp HHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHH
T ss_pred eeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHh
Confidence 11000 1122 378888899999999999999999999999995321 245778999999
Q ss_pred CCCCeEeccCCCCC------------------CCCCCcccC--C----CCchhHHHHHhhC-CCCCCcEEEEecccCcCC
Q 006933 186 DPSRLLHYEGGGSR------------------TPSTDIVCP--M----YMRVWDIVMIAKD-PTETRPLILCEYSHAMGN 240 (625)
Q Consensus 186 DptRpv~~~~~~~~------------------~~~~Di~s~--~----Y~~~~~~~~~~~~-~~~~kP~i~~Eygha~gn 240 (625)
||+-...+..-+.. ....|-++. | ++ ...+...++. ...+.|+.+||+--....
T Consensus 169 ~P~a~L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~-~~~i~~~l~~~~~~Gl~i~ITElDv~~~~ 247 (320)
T PF00331_consen 169 DPNAKLFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYP-PEQIWNALDRFASLGLPIHITELDVRDDD 247 (320)
T ss_dssp HTTSEEEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSS-HHHHHHHHHHHHTTTSEEEEEEEEEESSS
T ss_pred CCCcEEEeccccccchHHHHHHHHHHHHHHhCCCccceechhhccCCCCC-HHHHHHHHHHHHHcCCceEEEeeeecCCC
Confidence 99754444321100 011344442 1 22 3333322211 122799999999633222
Q ss_pred CCC----------cHHHHHHHHHhcC--CceeEeEecccCCceeeecCCCceeeeecCCCCCCCCCccccccceecCCCC
Q 006933 241 SNG----------NIHEYWEAIDSTF--GLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRT 308 (625)
Q Consensus 241 s~g----------~~~~yw~~~~~~p--~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~Glv~~dr~ 308 (625)
... .++++.+.+.++| .+.|-.+|.+.|......... ...-+|++.+.+
T Consensus 248 ~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~~-------------------~~~~~lfd~~~~ 308 (320)
T PF00331_consen 248 NPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDGYSWRPDTP-------------------PDRPLLFDEDYQ 308 (320)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTTGSTTGGHS-------------------EG--SSB-TTSB
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCCCcccCCCC-------------------CCCCeeECCCcC
Confidence 221 2456778888999 999999999999532221100 112388999999
Q ss_pred CCccHHHHHHh
Q 006933 309 PHPALHEVKYV 319 (625)
Q Consensus 309 pk~~~~e~k~~ 319 (625)
|||+|+.++++
T Consensus 309 ~Kpa~~~~~~a 319 (320)
T PF00331_consen 309 PKPAYDAIVDA 319 (320)
T ss_dssp B-HHHHHHHHH
T ss_pred CCHHHHHHHhc
Confidence 99999999875
No 22
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.021 Score=57.80 Aligned_cols=188 Identities=11% Similarity=0.069 Sum_probs=123.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEEccC--CCChhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHH
Q 006933 65 PRVGKTNIESCMVKDLVLMKQNNINAVRNSH--YPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAA 142 (625)
Q Consensus 65 p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtsh--yp~~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~ 142 (625)
+.-|+.-+.++|+.||+++|.... .||+.. --.-+..+.++...||.|...+.. .++- ..+
T Consensus 54 n~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~--------------tdd~--~~~ 116 (305)
T COG5309 54 NDDGTCKSADQVASDLELLASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIWP--------------TDDI--HDA 116 (305)
T ss_pred CCCCCCcCHHHHHhHHHHhccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEee--------------ccch--hhh
Confidence 456888899999999999999988 999943 222467899999999999988742 2222 233
Q ss_pred HHHHHHHHHHHhCCCceEEEEEccCCCCCCCc---------HHHHHHHHHHhCCCCeEeccCCCC-------CCCCCCcc
Q 006933 143 MMDRVIGMVERDKNHASIICWSLGNEAGHGPN---------HSAAAGWIRGKDPSRLLHYEGGGS-------RTPSTDIV 206 (625)
Q Consensus 143 ~~~~~~~mV~r~kNHPSIi~WslgNE~~~g~~---------~~~~~~~ik~~DptRpv~~~~~~~-------~~~~~Di~ 206 (625)
..+.+..-+...---+.|..-.+|||.-++.. +......+++.+-+-||+....+. ....+|++
T Consensus 117 ~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~np~l~~~SDfi 196 (305)
T COG5309 117 VEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVINNPELCQASDFI 196 (305)
T ss_pred HHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeCChHHhhhhhhh
Confidence 33467777888888999999999999976543 345566778888888887554321 12346766
Q ss_pred cCC---CCchh------------HHHHHhhCCCCCCcEEEEecccCc-CC-------CCCcHHHHHHHHHhcCCce--eE
Q 006933 207 CPM---YMRVW------------DIVMIAKDPTETRPLILCEYSHAM-GN-------SNGNIHEYWEAIDSTFGLQ--GG 261 (625)
Q Consensus 207 s~~---Y~~~~------------~~~~~~~~~~~~kP~i~~Eygha~-gn-------s~g~~~~yw~~~~~~p~~~--Gg 261 (625)
..+ |..-. .++........+|+++++|-|-.. |. +..+...||+.+...-+-. --
T Consensus 197 a~N~~aYwd~~~~a~~~~~f~~~q~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~ 276 (305)
T COG5309 197 AANAHAYWDGQTVANAAGTFLLEQLERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSCGYDV 276 (305)
T ss_pred hcccchhccccchhhhhhHHHHHHHHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhccCccE
Confidence 543 54321 111111112235999999998542 22 3456788888776532222 34
Q ss_pred eEecccCC
Q 006933 262 FIWDWVDQ 269 (625)
Q Consensus 262 fiW~~~D~ 269 (625)
|+++=+|+
T Consensus 277 fvfeAFdd 284 (305)
T COG5309 277 FVFEAFDD 284 (305)
T ss_pred EEeeeccc
Confidence 55555553
No 23
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.054 Score=55.68 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=87.1
Q ss_pred HHH-HHHHHHcCCcEEEc--cCCCCh-------------h---HHHHHHhhcCCeEeeeCcccccCccccccCCCC----
Q 006933 77 VKD-LVLMKQNNINAVRN--SHYPQH-------------P---RWYELCDLFGLYMIDEANIETHGFYFSEHLKHP---- 133 (625)
Q Consensus 77 ~~D-l~lmK~~g~NaVRt--shyp~~-------------~---~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~---- 133 (625)
++| ++.+|++|+|.||+ ..-|-+ . +.-..|..+||.|+.++..-.| |...+.-+-|
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDf-waDPakQ~kPkaW~ 143 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDF-WADPAKQKKPKAWE 143 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhh-ccChhhcCCcHHhh
Confidence 444 56799999999998 333332 1 2444566799999998832111 0000000000
Q ss_pred -CCChHHHHHHHHHHHHHHHHhCCCce-EEEEEccCCCCCC--------CcHHH-------HHHHHHHhCCCCeEe--cc
Q 006933 134 -TMEPSWAAAMMDRVIGMVERDKNHAS-IICWSLGNEAGHG--------PNHSA-------AAGWIRGKDPSRLLH--YE 194 (625)
Q Consensus 134 -~~dp~~~~~~~~~~~~mV~r~kNHPS-Ii~WslgNE~~~g--------~~~~~-------~~~~ik~~DptRpv~--~~ 194 (625)
-+-...+.+..+..+..+...++.-- +=|-.+|||...| .++.. ..+.+|+.||+-.|. ..
T Consensus 144 ~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla 223 (403)
T COG3867 144 NLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLA 223 (403)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEec
Confidence 02223345555666777766665544 4455799999542 35544 456789999987764 33
Q ss_pred CCCC-------------CCCCCCcccC-CCCc----hhHH----HHHhhCCCCCCcEEEEeccc
Q 006933 195 GGGS-------------RTPSTDIVCP-MYMR----VWDI----VMIAKDPTETRPLILCEYSH 236 (625)
Q Consensus 195 ~~~~-------------~~~~~Di~s~-~Y~~----~~~~----~~~~~~~~~~kP~i~~Eygh 236 (625)
.+.. ..-..|+++. +|+- +..+ ...+..+ .|-+++||-+.
T Consensus 224 ~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhgtl~nL~~nl~dia~rY--~K~VmV~Etay 285 (403)
T COG3867 224 EGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHGTLNNLTTNLNDIASRY--HKDVMVVETAY 285 (403)
T ss_pred CCCCCchhhHHHHHHHHcCCCceEEeeeccccccCcHHHHHhHHHHHHHHh--cCeEEEEEecc
Confidence 2211 0223466654 4542 2222 2334434 78899999874
No 24
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=96.32 E-value=0.05 Score=61.24 Aligned_cols=230 Identities=16% Similarity=0.125 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHHH-HcCCcEEEccCCCCh---------------------hHHHHHHhhcCCeEeeeCcccccCcc----
Q 006933 72 IESCMVKDLVLMK-QNNINAVRNSHYPQH---------------------PRWYELCDLFGLYMIDEANIETHGFY---- 125 (625)
Q Consensus 72 ~~e~~~~Dl~lmK-~~g~NaVRtshyp~~---------------------~~fydlcDe~Gl~V~~E~~~e~hG~~---- 125 (625)
.++.++..++.++ +.||..||++.--.+ +..+|..-+.||..+.|+...--+..
T Consensus 37 l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~ 116 (486)
T PF01229_consen 37 LRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQ 116 (486)
T ss_dssp GBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--
T ss_pred hhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCC
Confidence 4566777777765 699999999543311 35799999999999988853211110
Q ss_pred ----ccccCCCCCCChHHHHHHHHHHHHHHHHhC-CCceEEEEEccCCCCCCC------------cHHHHHHHHHHhCCC
Q 006933 126 ----FSEHLKHPTMEPSWAAAMMDRVIGMVERDK-NHASIICWSLGNEAGHGP------------NHSAAAGWIRGKDPS 188 (625)
Q Consensus 126 ----~~~~~~~~~~dp~~~~~~~~~~~~mV~r~k-NHPSIi~WslgNE~~~g~------------~~~~~~~~ik~~Dpt 188 (625)
..+....|.+...|.+-+.+-++..+.|+. +.=+--.|.+-||+.... .++..++.||+.||+
T Consensus 117 ~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~ 196 (486)
T PF01229_consen 117 TVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPE 196 (486)
T ss_dssp EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TT
T ss_pred ccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 001111234556677766666777777763 233334689999986421 135677889999998
Q ss_pred CeEecc---CCCC------------CCCCCCcccCC-CCch-------------hH----------HHH-HhhCCCCCCc
Q 006933 189 RLLHYE---GGGS------------RTPSTDIVCPM-YMRV-------------WD----------IVM-IAKDPTETRP 228 (625)
Q Consensus 189 Rpv~~~---~~~~------------~~~~~Di~s~~-Y~~~-------------~~----------~~~-~~~~~~~~kP 228 (625)
=.|--. .+.. .....|++|.| |+.. .. +.+ ......+..|
T Consensus 197 ~~vGGp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 276 (486)
T PF01229_consen 197 LKVGGPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENMYERIEDSRRLFPELKETRPIINDEADPNLP 276 (486)
T ss_dssp SEEEEEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--
T ss_pred CcccCccccccHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCc
Confidence 655311 1100 12346888876 5421 11 111 1223345789
Q ss_pred EEEEecccCcCCCCC----cH-HHHH-H-HHHhcC-CceeEeEecccCCceeeecCCCceeeeecCCCCCCCCCcc-ccc
Q 006933 229 LILCEYSHAMGNSNG----NI-HEYW-E-AIDSTF-GLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLN-FCL 299 (625)
Q Consensus 229 ~i~~Eygha~gns~g----~~-~~yw-~-~~~~~p-~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~-f~~ 299 (625)
+.++||+.+..+... .+ ..|. . .+.... .+.+...|.+.|.= .+.+.. +.. +..
T Consensus 277 ~~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD~F----ee~~~~-------------~~pf~gg 339 (486)
T PF01229_consen 277 LYITEWNASISPRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSDRF----EENGTP-------------RKPFHGG 339 (486)
T ss_dssp EEEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS-------TTSS--------------SSSSSS-
T ss_pred eeecccccccCCCcchhccccchhhHHHHHHHhhhhhhhhhhccchhhhh----hccCCC-------------CCceecc
Confidence 999999855433211 11 1221 1 333333 34566678887721 111111 111 223
Q ss_pred cceecCCCCCCccHHHHHH
Q 006933 300 NGLLWPDRTPHPALHEVKY 318 (625)
Q Consensus 300 ~Glv~~dr~pk~~~~e~k~ 318 (625)
-||+..++.+||+|+.+.-
T Consensus 340 fGLlt~~gI~KPa~~A~~~ 358 (486)
T PF01229_consen 340 FGLLTKLGIPKPAYYAFQL 358 (486)
T ss_dssp S-SEECCCEE-HHHHHHHH
T ss_pred hhhhhccCCCchHHHHHHH
Confidence 5999999999999998664
No 25
>TIGR03356 BGL beta-galactosidase.
Probab=95.75 E-value=0.046 Score=60.53 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC-----h-------hHHHHHHhhcCCeEeeeCcccccCccccccCC--
Q 006933 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEANIETHGFYFSEHLK-- 131 (625)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NaVRtsh-----yp~-----~-------~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~-- 131 (625)
-...++++||++||++|+|++|+|. .|. + ..+++.|-++||-++..+. | |.-...+.
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~---H-fd~P~~l~~~ 126 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY---H-WDLPQALEDR 126 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec---c-CCccHHHHhc
Confidence 3578999999999999999999953 333 1 2478999999999998772 1 21000000
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCC
Q 006933 132 HPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (625)
Q Consensus 132 ~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~ 170 (625)
---.++...+.+.+.++.+++++++ .|=.|..-||+.
T Consensus 127 gGw~~~~~~~~f~~ya~~~~~~~~d--~v~~w~t~NEp~ 163 (427)
T TIGR03356 127 GGWLNRDTAEWFAEYAAVVAERLGD--RVKHWITLNEPW 163 (427)
T ss_pred CCCCChHHHHHHHHHHHHHHHHhCC--cCCEEEEecCcc
Confidence 0013577788899999999999998 467788888884
No 26
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=95.42 E-value=0.053 Score=59.62 Aligned_cols=111 Identities=20% Similarity=0.158 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcCCcEEEc-------cCCC-Ch------------hHHHHHHhhcCCeEeeeCcccccCccc-------cc
Q 006933 76 MVKDLVLMKQNNINAVRN-------SHYP-QH------------PRWYELCDLFGLYMIDEANIETHGFYF-------SE 128 (625)
Q Consensus 76 ~~~Dl~lmK~~g~NaVRt-------shyp-~~------------~~fydlcDe~Gl~V~~E~~~e~hG~~~-------~~ 128 (625)
.+.++..||++|||+||. .|++ .. .+..+.|.++||+|+.+. |+... ..
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~----H~~~~~~~~~~~s~ 150 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL----HGYPGGNNGHEHSG 150 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe----cccCCCCCCcCccc
Confidence 488999999999999999 2332 11 134777889999999886 44320 00
Q ss_pred cC-CCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCC---CC----cHHHHHHHH-HHhCCCCeE
Q 006933 129 HL-KHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGH---GP----NHSAAAGWI-RGKDPSRLL 191 (625)
Q Consensus 129 ~~-~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~---g~----~~~~~~~~i-k~~DptRpv 191 (625)
.. .+ .....-.+.+.+-.+.+..|+++-+.||+-.+-||+.. .. ...+.++.+ +++....+.
T Consensus 151 ~~~~~-~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~~~~ 221 (407)
T COG2730 151 YTSDY-KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSNAPH 221 (407)
T ss_pred ccccc-cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhcCce
Confidence 00 00 11223356778889999999999999999999999973 11 124556666 577777755
No 27
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=95.05 E-value=1.5 Score=46.06 Aligned_cols=205 Identities=17% Similarity=0.132 Sum_probs=114.5
Q ss_pred hhHHHHHHhhcCCeEeeeCcccccCccccccCCC-CCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCC------
Q 006933 99 HPRWYELCDLFGLYMIDEANIETHGFYFSEHLKH-PTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGH------ 171 (625)
Q Consensus 99 ~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~-~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~------ 171 (625)
.+..++.|.++||-+=-- .+-+|... .+++.. -...+...+.+.+.+..++.|+|+. |+.|.+-||.-.
T Consensus 84 AD~ia~FAr~h~m~lhGH-tLvW~~q~-P~W~~~~e~~~~~~~~~~e~hI~tV~~rYkg~--~~sWDVVNE~vdd~g~~R 159 (345)
T COG3693 84 ADAIANFARKHNMPLHGH-TLVWHSQV-PDWLFGDELSKEALAKMVEEHIKTVVGRYKGS--VASWDVVNEAVDDQGSLR 159 (345)
T ss_pred hHHHHHHHHHcCCeeccc-eeeecccC-CchhhccccChHHHHHHHHHHHHHHHHhccCc--eeEEEecccccCCCchhh
Confidence 456899999999865211 11111111 111100 0234567778888899999999987 999999999942
Q ss_pred ---------CC-cHHHHHHHHHHhCCC-CeEe--ccCCCCC----------------CCCCCcccC------CCCchhHH
Q 006933 172 ---------GP-NHSAAAGWIRGKDPS-RLLH--YEGGGSR----------------TPSTDIVCP------MYMRVWDI 216 (625)
Q Consensus 172 ---------g~-~~~~~~~~ik~~Dpt-Rpv~--~~~~~~~----------------~~~~Di~s~------~Y~~~~~~ 216 (625)
|+ .++...+++|+.||. +++. |.-.+.. ..-.|-++. .++..+.+
T Consensus 160 ~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~ 239 (345)
T COG3693 160 RSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKM 239 (345)
T ss_pred hhhhhccCCccHHHHHHHHHHHhhCCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHH
Confidence 11 256778899999997 4543 2111100 111333332 24555544
Q ss_pred HHHh-hCCCCCCcEEEEecccCc-CCCCCcHHHHH----------HHHHhcCC-ceeEeEecccCCceeeecCCCceeee
Q 006933 217 VMIA-KDPTETRPLILCEYSHAM-GNSNGNIHEYW----------EAIDSTFG-LQGGFIWDWVDQGLLRELADGTKHWA 283 (625)
Q Consensus 217 ~~~~-~~~~~~kP~i~~Eygha~-gns~g~~~~yw----------~~~~~~p~-~~GgfiW~~~D~~~~~~~~~g~~~~~ 283 (625)
..-+ +....+-|+++||.--.. ++-++.-+.|. ..+...+. +-+--+|-..|.-.+...... .
T Consensus 240 ~~a~~~~~k~Gl~i~VTELD~~~~~P~~~~p~~~~~~~~~~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~----~ 315 (345)
T COG3693 240 RAALLKFSKLGLPIYVTELDMSDYTPDSGAPRLYLQKAASRAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDP----R 315 (345)
T ss_pred HHHHHHHhhcCCCceEEEeeeeccCCCCccHHHHHHHHHHHHHHHHHHHhcccccceEEEeeeccCcccccCCcc----C
Confidence 3222 222237899999985322 33334333322 23334554 667778988886443322211 1
Q ss_pred ecCCCCCCCCCccccccceecCCCCCCccHHHHHHhhcc
Q 006933 284 YGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQA 322 (625)
Q Consensus 284 yggdf~~~~~d~~f~~~Glv~~dr~pk~~~~e~k~~~~p 322 (625)
|+| +. -=++|.+.+|||.|+.++.+-+|
T Consensus 316 ~~~-------~r----Pl~~D~n~~pKPa~~aI~e~la~ 343 (345)
T COG3693 316 RDG-------LR----PLLFDDNYQPKPAYKAIAEVLAP 343 (345)
T ss_pred cCC-------CC----CcccCCCCCcchHHHHHHHHhcC
Confidence 211 11 12557788999999999866544
No 28
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=94.70 E-value=0.13 Score=57.76 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC-----h-------hHHHHHHhhcCCeEeeeCcccccCcc------cc
Q 006933 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEANIETHGFY------FS 127 (625)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NaVRtsh-----yp~-----~-------~~fydlcDe~Gl~V~~E~~~e~hG~~------~~ 127 (625)
-...++++||+|||++|+|+.|+|. .|+ + .++++.|-++||-.+..+. | |. ..
T Consensus 51 d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~---H-~dlP~~L~~~ 126 (469)
T PRK13511 51 DFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH---H-FDTPEALHSN 126 (469)
T ss_pred chhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec---C-CCCcHHHHHc
Confidence 3578999999999999999999953 443 1 2478999999999887663 1 11 00
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCC
Q 006933 128 EHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (625)
Q Consensus 128 ~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~ 170 (625)
+.. .+++..+.+.+.++.+++++.+ |=.|..-||+.
T Consensus 127 GGW----~n~~~v~~F~~YA~~~~~~fgd---Vk~W~T~NEP~ 162 (469)
T PRK13511 127 GDW----LNRENIDHFVRYAEFCFEEFPE---VKYWTTFNEIG 162 (469)
T ss_pred CCC----CCHHHHHHHHHHHHHHHHHhCC---CCEEEEccchh
Confidence 111 4567788899999999999998 89999999985
No 29
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=93.95 E-value=0.24 Score=55.53 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC-----h-------hHHHHHHhhcCCeEeeeCcccccCcc------cc
Q 006933 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEANIETHGFY------FS 127 (625)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NaVRtsh-----yp~-----~-------~~fydlcDe~Gl~V~~E~~~e~hG~~------~~ 127 (625)
-...++++||+|||++|+|+.|+|. .|. + ..+.+.|-++||-.+..+. | |. ..
T Consensus 50 d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~---H-~dlP~~L~~~ 125 (467)
T TIGR01233 50 DFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH---H-FDTPEALHSN 125 (467)
T ss_pred chhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc---C-CCCcHHHHHc
Confidence 3578999999999999999999953 443 1 2477889999999997763 1 11 00
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCC
Q 006933 128 EHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (625)
Q Consensus 128 ~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~ 170 (625)
+.. .+++..+.+.+.++.+++++. . |=.|..-||+.
T Consensus 126 GGW----~n~~~v~~F~~YA~~~f~~fg-d--Vk~WiT~NEP~ 161 (467)
T TIGR01233 126 GDF----LNRENIEHFIDYAAFCFEEFP-E--VNYWTTFNEIG 161 (467)
T ss_pred CCC----CCHHHHHHHHHHHHHHHHHhC-C--CCEEEEecchh
Confidence 111 456778889999999999998 3 88999999985
No 30
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=93.93 E-value=0.16 Score=56.99 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEccC-----CCC-------h------hHHHHHHhhcCCeEeeeCcccccCcc-------c
Q 006933 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-------H------PRWYELCDLFGLYMIDEANIETHGFY-------F 126 (625)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NaVRtsh-----yp~-------~------~~fydlcDe~Gl~V~~E~~~e~hG~~-------~ 126 (625)
...++++||++||++|+|+.|+|. .|. . ..+++.|-++||-.+..+. | |. .
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~---H-~dlP~~L~~~ 142 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS---H-FEMPLHLVQQ 142 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee---C-CCCCHHHHHh
Confidence 567899999999999999999953 332 1 2478999999999997762 1 11 0
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCC
Q 006933 127 SEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (625)
Q Consensus 127 ~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~ 170 (625)
.+.. .++...+.+.+.++.+++++++. |=.|..-||+.
T Consensus 143 yGGW----~n~~~~~~F~~Ya~~~f~~fgdr--Vk~WiT~NEp~ 180 (477)
T PRK15014 143 YGSW----TNRKVVDFFVRFAEVVFERYKHK--VKYWMTFNEIN 180 (477)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhcCc--CCEEEEecCcc
Confidence 0111 35678889999999999999987 67888888874
No 31
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=92.82 E-value=0.49 Score=52.26 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEccC-----CCC-------h------hHHHHHHhhcCCeEeeeCc-----ccccCccccc
Q 006933 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-------H------PRWYELCDLFGLYMIDEAN-----IETHGFYFSE 128 (625)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NaVRtsh-----yp~-------~------~~fydlcDe~Gl~V~~E~~-----~e~hG~~~~~ 128 (625)
-..+.++||+|||+||+|+.|+|- .|+ . ..++|-|-++||..+..+. +.-+ ...+
T Consensus 57 ~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~--~~yg 134 (460)
T COG2723 57 FYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQ--KPYG 134 (460)
T ss_pred hhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHh--hccC
Confidence 378899999999999999999963 332 1 2478999999999997662 1110 0001
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCC
Q 006933 129 HLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (625)
Q Consensus 129 ~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~ 170 (625)
.. .+..-...+.+.++.+.+|+++- |=.|..-||+.
T Consensus 135 GW----~nR~~i~~F~~ya~~vf~~f~dk--Vk~W~TFNE~n 170 (460)
T COG2723 135 GW----ENRETVDAFARYAATVFERFGDK--VKYWFTFNEPN 170 (460)
T ss_pred Cc----cCHHHHHHHHHHHHHHHHHhcCc--ceEEEEecchh
Confidence 11 34455677888889999998863 67899999984
No 32
>PLN02998 beta-glucosidase
Probab=91.54 E-value=0.63 Score=52.50 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC-----h-------hHHHHHHhhcCCeEeeeCcccccCcc-------c
Q 006933 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEANIETHGFY-------F 126 (625)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NaVRtsh-----yp~-----~-------~~fydlcDe~Gl~V~~E~~~e~hG~~-------~ 126 (625)
-...++++||++||++|+|+-|+|. .|. + ..+.+.|-++||-.+..+. | |. .
T Consensus 79 D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~---H-~dlP~~L~~~ 154 (497)
T PLN02998 79 DQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH---H-FDLPQALEDE 154 (497)
T ss_pred cHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec---C-CCCCHHHHHh
Confidence 3678999999999999999999953 343 2 2488999999998887662 1 11 0
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCC
Q 006933 127 SEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (625)
Q Consensus 127 ~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~ 170 (625)
.+.. .+++..+.+.+.++.+++++.+. |=.|..-||+.
T Consensus 155 yGGW----~n~~~v~~F~~YA~~~~~~fgdr--Vk~WiT~NEP~ 192 (497)
T PLN02998 155 YGGW----LSQEIVRDFTAYADTCFKEFGDR--VSHWTTINEVN 192 (497)
T ss_pred hCCc----CCchHHHHHHHHHHHHHHHhcCc--CCEEEEccCcc
Confidence 0111 34567788889999999998864 45677778774
No 33
>PLN02849 beta-glucosidase
Probab=91.39 E-value=0.79 Score=51.82 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC-----h-------hHHHHHHhhcCCeEeeeCcccccCcc-------c
Q 006933 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEANIETHGFY-------F 126 (625)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NaVRtsh-----yp~-----~-------~~fydlcDe~Gl~V~~E~~~e~hG~~-------~ 126 (625)
-...++++||+|||++|+|+.|+|. .|. + ..+.+.|-++||-.+..+. | |. .
T Consensus 76 D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~---H-~dlP~~L~~~ 151 (503)
T PLN02849 76 DGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF---H-YDHPQYLEDD 151 (503)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec---C-CCCcHHHHHh
Confidence 3678999999999999999999963 443 1 2478999999999987662 1 11 0
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCC
Q 006933 127 SEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (625)
Q Consensus 127 ~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~ 170 (625)
.+.. .+++..+.+.+.++.+++++.+. |=.|..-||+.
T Consensus 152 yGGW----~nr~~v~~F~~YA~~~f~~fgDr--Vk~WiT~NEP~ 189 (503)
T PLN02849 152 YGGW----INRRIIKDFTAYADVCFREFGNH--VKFWTTINEAN 189 (503)
T ss_pred cCCc----CCchHHHHHHHHHHHHHHHhcCc--CCEEEEecchh
Confidence 0111 35567788888999999998753 45677777763
No 34
>PLN02814 beta-glucosidase
Probab=91.27 E-value=0.79 Score=51.85 Aligned_cols=90 Identities=13% Similarity=0.047 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC-----h-------hHHHHHHhhcCCeEeeeCcccccCcc-------c
Q 006933 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEANIETHGFY-------F 126 (625)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NaVRtsh-----yp~-----~-------~~fydlcDe~Gl~V~~E~~~e~hG~~-------~ 126 (625)
-...++++||++||++|+|+.|+|. .|+ + ..+.+.|-++||-.+..+. | |. .
T Consensus 74 D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~---H-~dlP~~L~~~ 149 (504)
T PLN02814 74 DGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY---H-YDLPQSLEDE 149 (504)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec---C-CCCCHHHHHh
Confidence 3578999999999999999999963 443 1 2478999999999887662 1 11 0
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCC
Q 006933 127 SEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (625)
Q Consensus 127 ~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~ 170 (625)
.+.. .+++..+.+.+.++.+++++.+. |=.|..-||+.
T Consensus 150 yGGW----~n~~~i~~F~~YA~~~f~~fgdr--Vk~WiT~NEP~ 187 (504)
T PLN02814 150 YGGW----INRKIIEDFTAFADVCFREFGED--VKLWTTINEAT 187 (504)
T ss_pred cCCc----CChhHHHHHHHHHHHHHHHhCCc--CCEEEeccccc
Confidence 0111 35567788888999999998764 45677777774
No 35
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=90.92 E-value=2 Score=46.98 Aligned_cols=97 Identities=28% Similarity=0.446 Sum_probs=65.0
Q ss_pred CHHHHHHHHH-HHHHcCCcEEEc------cCC-------CCh--------------------hHHHHHHhhcCCeEeeeC
Q 006933 72 IESCMVKDLV-LMKQNNINAVRN------SHY-------PQH--------------------PRWYELCDLFGLYMIDEA 117 (625)
Q Consensus 72 ~~e~~~~Dl~-lmK~~g~NaVRt------shy-------p~~--------------------~~fydlcDe~Gl~V~~E~ 117 (625)
+.+-+++|+. ++|++.+-.||- +.| |-+ -+|+++|...|.-++...
T Consensus 46 d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~av 125 (501)
T COG3534 46 DERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAV 125 (501)
T ss_pred chhhhHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEE
Confidence 4566788864 789999999997 111 111 259999999999888888
Q ss_pred cccccCccccccCCCCCCChHHHHHHHHHHHHHHHHhCCCce------------------EEEEEccCCCCC----CC--
Q 006933 118 NIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHAS------------------IICWSLGNEAGH----GP-- 173 (625)
Q Consensus 118 ~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPS------------------Ii~WslgNE~~~----g~-- 173 (625)
|+.+-| ++.++++|+ |-|||. |=+|+||||+.. |.
T Consensus 126 N~Gsrg--------------------vd~ar~~vE-Y~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~~~ 184 (501)
T COG3534 126 NLGSRG--------------------VDEARNWVE-YCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGHKT 184 (501)
T ss_pred ecCCcc--------------------HHHHHHHHH-HccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCccccccc
Confidence 764433 133444443 445554 889999999932 22
Q ss_pred ------cHHHHHHHHHHhCCCC
Q 006933 174 ------NHSAAAGWIRGKDPSR 189 (625)
Q Consensus 174 ------~~~~~~~~ik~~DptR 189 (625)
...+..++.|-.||+-
T Consensus 185 a~EY~~~A~e~~k~~k~~d~t~ 206 (501)
T COG3534 185 APEYGRLANEYRKYMKYFDPTI 206 (501)
T ss_pred CHHHHHHHHHHHHHHhhcCccc
Confidence 1345567888888873
No 36
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=90.71 E-value=0.77 Score=51.52 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC------h-------hHHHHHHhhcCCeEeeeCcccccCcc-----cc
Q 006933 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ------H-------PRWYELCDLFGLYMIDEANIETHGFY-----FS 127 (625)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NaVRtsh-----yp~------~-------~~fydlcDe~Gl~V~~E~~~e~hG~~-----~~ 127 (625)
-...++++|+++||++|+|+.|+|. .|+ + ..+++.|-++||-++..+.- +.+. ..
T Consensus 68 D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H--~~~P~~l~~~~ 145 (474)
T PRK09852 68 DFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCH--FDVPMHLVTEY 145 (474)
T ss_pred chhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC--CCCCHHHHHhc
Confidence 3578899999999999999999953 332 1 24788999999999877631 1110 00
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCC
Q 006933 128 EHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (625)
Q Consensus 128 ~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~ 170 (625)
+.. .++...+.+.+.++.+++++.+. |=.|..-||+.
T Consensus 146 GGW----~~~~~~~~F~~ya~~~~~~fgd~--Vk~WiTfNEPn 182 (474)
T PRK09852 146 GSW----RNRKMVEFFSRYARTCFEAFDGL--VKYWLTFNEIN 182 (474)
T ss_pred CCC----CCHHHHHHHHHHHHHHHHHhcCc--CCeEEeecchh
Confidence 111 35677888999999999998865 34577777763
No 37
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=90.50 E-value=1 Score=50.71 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC------h-------hHHHHHHhhcCCeEeeeCcccccCcc-------
Q 006933 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ------H-------PRWYELCDLFGLYMIDEANIETHGFY------- 125 (625)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NaVRtsh-----yp~------~-------~~fydlcDe~Gl~V~~E~~~e~hG~~------- 125 (625)
-...++++||++||++|+|+.|+|. .|. + ..+.+.|-++||-.+..+. | |.
T Consensus 64 D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~---H-~dlP~~L~~ 139 (476)
T PRK09589 64 DFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS---H-FEMPYHLVT 139 (476)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---C-CCCCHHHHH
Confidence 3678999999999999999999963 443 1 2478999999998887662 1 11
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCC
Q 006933 126 FSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (625)
Q Consensus 126 ~~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~ 170 (625)
..+.. .+++..+.+.+.++.+++++.+. |=.|..-||+.
T Consensus 140 ~yGGW----~n~~~i~~F~~YA~~~f~~fgdr--Vk~WiT~NEp~ 178 (476)
T PRK09589 140 EYGGW----RNRKLIDFFVRFAEVVFTRYKDK--VKYWMTFNEIN 178 (476)
T ss_pred hcCCc----CChHHHHHHHHHHHHHHHHhcCC--CCEEEEecchh
Confidence 00111 34567788889999999998753 45677777764
No 38
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=90.18 E-value=0.66 Score=51.87 Aligned_cols=90 Identities=20% Similarity=0.124 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCCh-------------hHHHHHHhhcCCeEeeeCcccccCcc-c-----
Q 006933 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQH-------------PRWYELCDLFGLYMIDEANIETHGFY-F----- 126 (625)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NaVRtsh-----yp~~-------------~~fydlcDe~Gl~V~~E~~~e~hG~~-~----- 126 (625)
-...++++||++||++|+|+.|+|. .|.. ..+++.|-+.||-.+..+. | |. +
T Consensus 55 d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~---H-~~~P~~l~~ 130 (455)
T PF00232_consen 55 DHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY---H-FDLPLWLED 130 (455)
T ss_dssp GHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE---S-S--BHHHHH
T ss_pred cchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee---e-cccccceee
Confidence 3578999999999999999999953 4441 2478899999999998763 2 11 0
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCC
Q 006933 127 SEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (625)
Q Consensus 127 ~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~ 170 (625)
.+.. .++...+.+.+.++.+++++.+. |=.|..-||+.
T Consensus 131 ~ggw----~~~~~~~~F~~Ya~~~~~~~gd~--V~~w~T~NEp~ 168 (455)
T PF00232_consen 131 YGGW----LNRETVDWFARYAEFVFERFGDR--VKYWITFNEPN 168 (455)
T ss_dssp HTGG----GSTHHHHHHHHHHHHHHHHHTTT--BSEEEEEETHH
T ss_pred cccc----cCHHHHHHHHHHHHHHHHHhCCC--cceEEeccccc
Confidence 0111 34677888999999999999875 67899999983
No 39
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=89.95 E-value=1.1 Score=50.26 Aligned_cols=91 Identities=13% Similarity=0.167 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC-------h------hHHHHHHhhcCCeEeeeCc-----ccccCcccc
Q 006933 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ-------H------PRWYELCDLFGLYMIDEAN-----IETHGFYFS 127 (625)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NaVRtsh-----yp~-------~------~~fydlcDe~Gl~V~~E~~-----~e~hG~~~~ 127 (625)
-...++++||+|||++|+|+.|+|. .|. . .++.+.|-+.||-.+..+. ..-+ ...
T Consensus 70 d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~--~~~ 147 (478)
T PRK09593 70 DMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLI--EEY 147 (478)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHH--hhc
Confidence 4678999999999999999999953 332 1 2478899999998887662 1000 000
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCC
Q 006933 128 EHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169 (625)
Q Consensus 128 ~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~ 169 (625)
+.. .+++..+.+.+.++.+++++.+. |=.|..-||+
T Consensus 148 GGW----~n~~~v~~F~~YA~~~~~~fgdr--Vk~WiT~NEP 183 (478)
T PRK09593 148 GGW----RNRKMVGFYERLCRTLFTRYKGL--VKYWLTFNEI 183 (478)
T ss_pred CCC----CChHHHHHHHHHHHHHHHHhcCc--CCEEEeecch
Confidence 111 34566788888999999998753 4456666665
No 40
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=88.31 E-value=0.31 Score=49.43 Aligned_cols=96 Identities=15% Similarity=-0.059 Sum_probs=74.4
Q ss_pred CCCeEEEEEEEEeeEEEEEECCEEEECCEEEEEEeeecCCCCCC--C--------CCCCCHHHH-----------HHHHH
Q 006933 23 SGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPR--V--------GKTNIESCM-----------VKDLV 81 (625)
Q Consensus 23 ~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lkGvN~h~~~p~--~--------G~a~~~e~~-----------~~Dl~ 81 (625)
++...|-+....|.|+|.+-...+..+|+|+.||.+|-|++--. . |-..+-+.- ..|..
T Consensus 80 d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~lP~~~~is~~~~~g~~~~~dn~ 159 (297)
T KOG2024|consen 80 DWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGHLPLEPDISALVFFGPLPAIDNN 159 (297)
T ss_pred CCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeecccccCccccchhhhhhhhccccccccCc
Confidence 45567889999999999999999999999999999999976321 1 111222111 22555
Q ss_pred HHHHcCCcEEEccCCCChhHHHHHHhhcCCeEeeeCc
Q 006933 82 LMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEAN 118 (625)
Q Consensus 82 lmK~~g~NaVRtshyp~~~~fydlcDe~Gl~V~~E~~ 118 (625)
+.-..+-|+--++|||........|+.+++.|++|..
T Consensus 160 L~~~t~~~~~~~dffnYag~~~sv~l~t~p~vyi~~~ 196 (297)
T KOG2024|consen 160 LLSWTGPNSFCFDFFNYAGEQRSVCLYTTPVVYIEDI 196 (297)
T ss_pred ccccccCCcccccCCCchhhheeeeeccCCeEEecCc
Confidence 6777778888889999999999999999999998863
No 41
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=87.94 E-value=45 Score=36.39 Aligned_cols=193 Identities=17% Similarity=0.095 Sum_probs=104.3
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHc-CCcEEEc-cCCCC-----hhHHHHHHhhcCCeEe-eeCcccccCccccc
Q 006933 57 GVNRHEHHPRVGKTNIESCMVKDLVLMKQN-NINAVRN-SHYPQ-----HPRWYELCDLFGLYMI-DEANIETHGFYFSE 128 (625)
Q Consensus 57 GvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~-g~NaVRt-shyp~-----~~~fydlcDe~Gl~V~-~E~~~e~hG~~~~~ 128 (625)
+..|-...+..|.+-+.+.+.+|+..++.+ ++. -++ -|.|. -..+-++++++||-|. ...+.-+|.....+
T Consensus 23 ~~tRf~~f~~~g~~r~~~e~~~d~~~v~~L~~~~-~~v~lH~~~d~~~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~~~G 101 (378)
T TIGR02635 23 SGTRFKVFHQEGAARNVFEKIEDAALVHRLTGIC-PTVALHIPWDRVEDYEELARYAEELGLKIGAINPNLFQDDDYKFG 101 (378)
T ss_pred CCcccccCCCCCCCCCHHHHHHHHHHHHhhcCCC-CceeeccCCccccCHHHHHHHHHHcCCceeeeeCCccCCcccCCC
Confidence 344433345578888899999999998875 443 222 25552 3579999999999987 34443333322122
Q ss_pred cCCCCCCChHHHHHHHHHHHHHH--HHhCCCceEEEEE--ccCCCCCCCc-------HHHHHHHHHHhCCCCeEeccCCC
Q 006933 129 HLKHPTMEPSWAAAMMDRVIGMV--ERDKNHASIICWS--LGNEAGHGPN-------HSAAAGWIRGKDPSRLLHYEGGG 197 (625)
Q Consensus 129 ~~~~~~~dp~~~~~~~~~~~~mV--~r~kNHPSIi~Ws--lgNE~~~g~~-------~~~~~~~ik~~DptRpv~~~~~~ 197 (625)
.+ ...||..++..++++++.+ .+.-..|+|.+|. .-|-++.... .+.+.+.+....+.-.+..|.--
T Consensus 102 SL--t~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW~~DG~~~~g~~~~~~a~~rl~esL~eI~~~~~~~v~~~iE~Kp 179 (378)
T TIGR02635 102 SL--THPDKRIRRKAIDHLLECVDIAKKTGSKDISLWLADGTNYPGQDDFRSRKDRLEESLAEVYEHLGADMRLLIEYKF 179 (378)
T ss_pred CC--CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCcCcCCcccCHHHHHHHHHHHHHHHHHhCcCCCEEEEecCC
Confidence 22 2568888888888888777 4555788999993 2233332211 12233333332232223333210
Q ss_pred CCC--CCCCcccCCCCchhHHHHHhhCCCCCCcEEEEecccCcCCCCCcHHHHHHHHHhcCCcee
Q 006933 198 SRT--PSTDIVCPMYMRVWDIVMIAKDPTETRPLILCEYSHAMGNSNGNIHEYWEAIDSTFGLQG 260 (625)
Q Consensus 198 ~~~--~~~Di~s~~Y~~~~~~~~~~~~~~~~kP~i~~Eygha~gns~g~~~~yw~~~~~~p~~~G 260 (625)
+.. ..+|+ ++.............. -.++.+.||.+ ...++.++...+...+++.|
T Consensus 180 ~Ep~~y~t~~-----~~~~~~l~l~~~lg~~-~~v~lD~GH~~--~~Enia~~~a~l~~~~kL~h 236 (378)
T TIGR02635 180 FEPAFYHTDI-----PDWGTAYALSEKLGER-ALVLVDTGHHA--QGTNIEFIVATLLDEKKLGG 236 (378)
T ss_pred CCCceeeecC-----CcHHHHHHHHHhhCCC-ceEEeecCccC--CCCCHHHHHHHHhhCCceeE
Confidence 000 01111 1112222222222222 36777999964 34578777666666666644
No 42
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=84.70 E-value=2 Score=46.99 Aligned_cols=75 Identities=13% Similarity=0.264 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccCC-CC------hhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHH
Q 006933 71 NIESCMVKDLVLMKQNNINAVRNSHY-PQ------HPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAM 143 (625)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NaVRtshy-p~------~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~ 143 (625)
.+.+.+++||+++|++||.+.=+-.. +. -...|+.|++.|+.+...+++..-+ . |.
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~~~~-----------~---~~--- 76 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFSFDMNSLG-----------P---WS--- 76 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEEecccCCC-----------C---CC---
Confidence 58999999999999999988655322 11 2458999999999999888652111 1 11
Q ss_pred HHHHHHHHHHhCCCceEEE
Q 006933 144 MDRVIGMVERDKNHASIIC 162 (625)
Q Consensus 144 ~~~~~~mV~r~kNHPSIi~ 162 (625)
.+++.++|+++.+||+-+-
T Consensus 77 ~~~~~~~i~~y~~~pa~~~ 95 (386)
T PF03659_consen 77 QDELIALIKKYAGHPAYFR 95 (386)
T ss_pred HHHHHHHHHHHcCChhHEe
Confidence 1789999999999999665
No 43
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=82.40 E-value=76 Score=34.15 Aligned_cols=162 Identities=16% Similarity=0.106 Sum_probs=83.7
Q ss_pred HcCCcEEEccCCCCh-------hHHHHH------HhhcCCeEeeeCcccccCcc-----c---cccCCCCCCChHHHHHH
Q 006933 85 QNNINAVRNSHYPQH-------PRWYEL------CDLFGLYMIDEANIETHGFY-----F---SEHLKHPTMEPSWAAAM 143 (625)
Q Consensus 85 ~~g~NaVRtshyp~~-------~~fydl------cDe~Gl~V~~E~~~e~hG~~-----~---~~~~~~~~~dp~~~~~~ 143 (625)
++|+..+|+..-+++ ..||+- +=..|+.|+..-+-.-.-|. . .+.+ .++-...|
T Consensus 77 ~lg~si~Rv~I~~ndfsl~g~~d~w~kels~Ak~~in~g~ivfASPWspPa~Mktt~~~ngg~~g~L-----k~e~Ya~y 151 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLGGSADNWYKELSTAKSAINPGMIVFASPWSPPASMKTTNNRNGGNAGRL-----KYEKYADY 151 (433)
T ss_pred ccCceEEEEEecccccccCCCcchhhhhcccchhhcCCCcEEEecCCCCchhhhhccCcCCcccccc-----chhHhHHH
Confidence 589999999666555 344432 23568888765422110011 0 0111 12223344
Q ss_pred HHHHHHHHHHhCCC-ceEEEEEccCCCCCCCc-------HHHHHHHHHHhCC-----CCeEeccCCCCC-----------
Q 006933 144 MDRVIGMVERDKNH-ASIICWSLGNEAGHGPN-------HSAAAGWIRGKDP-----SRLLHYEGGGSR----------- 199 (625)
Q Consensus 144 ~~~~~~mV~r~kNH-PSIi~WslgNE~~~g~~-------~~~~~~~ik~~Dp-----tRpv~~~~~~~~----------- 199 (625)
.+.+.+.|.-.+|| --+.+-|+.||+.+.++ .++..+.+++.=- .|.+..++.+..
T Consensus 152 A~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl~si~~~~rV~~pes~~~~~~~~dp~lnDp 231 (433)
T COG5520 152 ADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQYLASINAEMRVIIPESFKDLPNMSDPILNDP 231 (433)
T ss_pred HHHHHHHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHhhhhhccccEEecchhcccccccccccccCH
Confidence 45556666555555 45888899999987743 2333444433322 355555543210
Q ss_pred --CCCCCcccCC-CCch--hHHHHHhhCCCCCCcEEEEecccCcCCCCCc-HHHHHHHH
Q 006933 200 --TPSTDIVCPM-YMRV--WDIVMIAKDPTETRPLILCEYSHAMGNSNGN-IHEYWEAI 252 (625)
Q Consensus 200 --~~~~Di~s~~-Y~~~--~~~~~~~~~~~~~kP~i~~Eygha~gns~g~-~~~yw~~~ 252 (625)
....|+++.| |... +...-.++....+|-++++|.-. +.+.++. .++.|...
T Consensus 232 ~a~a~~~ilg~H~Ygg~v~~~p~~lak~~~~gKdlwmte~y~-~esd~~s~dr~~~~~~ 289 (433)
T COG5520 232 KALANMDILGTHLYGGQVSDQPYPLAKQKPAGKDLWMTECYP-PESDPNSADREALHVA 289 (433)
T ss_pred hHhcccceeEeeecccccccchhhHhhCCCcCCceEEeeccc-CCCCCCcchHHHHHHH
Confidence 2346777776 6542 12222334444489999999742 2233333 23466544
No 44
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=81.02 E-value=5.3 Score=34.70 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=38.8
Q ss_pred eEEEEecCCCCCCCCeEEEEEEEeCCEEEEEEeec-CCccCCCCEEEEEeCC
Q 006933 331 TLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILS-LPLIKPHSNYEIELKS 381 (625)
Q Consensus 331 ~~~v~N~~~f~~l~~~~~~w~l~~~g~~v~~g~~~-~~~v~p~~~~~~~l~~ 381 (625)
.+.|.|-..| ++.--.+.+.|..+|..+.+|+.. ...|+|.++..+.+|.
T Consensus 20 ~l~v~NPN~~-~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~ 70 (100)
T smart00769 20 KVKVQNPNPF-PIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPV 70 (100)
T ss_pred EEEEECCCCC-ccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEE
Confidence 5788888765 243345777888899999999984 5799999998887763
No 45
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=79.17 E-value=28 Score=37.44 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=71.4
Q ss_pred HHHHHHHHHcCCcEEEc---cC-----CCCh----------------hHHHHHHhhcCCeEeeeCcc-cccC-cccccc-
Q 006933 77 VKDLVLMKQNNINAVRN---SH-----YPQH----------------PRWYELCDLFGLYMIDEANI-ETHG-FYFSEH- 129 (625)
Q Consensus 77 ~~Dl~lmK~~g~NaVRt---sh-----yp~~----------------~~fydlcDe~Gl~V~~E~~~-e~hG-~~~~~~- 129 (625)
.+-++++|++|+..|=. +| +|.. .+|.+.|.++||.+..=... ..|- ......
T Consensus 94 dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~~ 173 (346)
T PF01120_consen 94 DQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWDWHHPDYPPDEE 173 (346)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSCH
T ss_pred HHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhcCcccCCCcc
Confidence 34588999999998765 22 1111 36999999999999752211 1111 100000
Q ss_pred --CC----CCCCChH-HHHHHHHHHHHHHHHhCCCceEEEEEccCCCCC-CCcHHHHHHHHHHhCCCCeEecc
Q 006933 130 --LK----HPTMEPS-WAAAMMDRVIGMVERDKNHASIICWSLGNEAGH-GPNHSAAAGWIRGKDPSRLLHYE 194 (625)
Q Consensus 130 --~~----~~~~dp~-~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~-g~~~~~~~~~ik~~DptRpv~~~ 194 (625)
.. .+..... +.+.+..++++++.|+ +|.++-+..+..... ......+++++|++-|.-.|...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y--~~d~lWfDg~~~~~~~~~~~~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 174 GDENGPADGPGNWQRYYNEYWLAQLRELLTRY--KPDILWFDGGWPDPDEDWDSAELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp CHHCC--HCCHHHHHHHHHHHHHHHHHHHHCS--TESEEEEESTTSCCCTHHHHHHHHHHHHHHSTTSEEECC
T ss_pred CCcccccccchhhHhHhhhhhHHHHHHHHhCC--CcceEEecCCCCccccccCHHHHHHHHHHhCCeEEEecc
Confidence 00 0000112 3447778999999999 999999999977532 23457899999999997777643
No 46
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=78.07 E-value=38 Score=31.39 Aligned_cols=67 Identities=16% Similarity=0.075 Sum_probs=50.3
Q ss_pred EEEEecCCCCCCCCeEEEEEEEeCC--EEEEEEeecCCccCCCCEEEEEeCCCCCcccCCCCCCceEEEEEEEEe
Q 006933 332 LKISNTNFFETTQGLEFSWVAHGDG--YKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTAKL 404 (625)
Q Consensus 332 ~~v~N~~~f~~l~~~~~~w~l~~~g--~~v~~g~~~~~~v~p~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~ 404 (625)
+.|.|... .=++++++..+|...| +++.+.+.....++|.+.-.+.||... .. -..++|.|.+++.-
T Consensus 48 ~~l~N~~~-~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~---~~--lk~G~Y~l~~~~~~ 116 (140)
T PF11797_consen 48 ANLQNPQP-AILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGG---KK--LKPGKYTLKITAKS 116 (140)
T ss_pred EEEECCCc-hhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEecCCC---cC--ccCCEEEEEEEEEc
Confidence 57788764 3457889999998654 688888887799999999999988421 11 23469999999984
No 47
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=73.33 E-value=6.8 Score=33.30 Aligned_cols=49 Identities=20% Similarity=0.157 Sum_probs=36.8
Q ss_pred eEEEEecCCCCCCCCeEEEEEEEeCCEEEE-EEeecCCccCCCCEEEEEeC
Q 006933 331 TLKISNTNFFETTQGLEFSWVAHGDGYKLG-FGILSLPLIKPHSNYEIELK 380 (625)
Q Consensus 331 ~~~v~N~~~f~~l~~~~~~w~l~~~g~~v~-~g~~~~~~v~p~~~~~~~l~ 380 (625)
+|.|.|-.. ..+.--.+.+.+..+|..+. .+..+...++|+++..+.++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~ 50 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVP 50 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEE
Confidence 478999887 45544467888889999998 55556578999998888776
No 48
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=71.52 E-value=16 Score=29.98 Aligned_cols=67 Identities=21% Similarity=0.344 Sum_probs=32.4
Q ss_pred eEEEEecCCCCCCCCeEEEEEEEeCCEEEEEEeecCCccCCCCEEEEEeCC-CCCcccCCCCCCceEEEEEEEEe
Q 006933 331 TLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKS-SPWYSQWNSCSAEEIFLTVTAKL 404 (625)
Q Consensus 331 ~~~v~N~~~f~~l~~~~~~w~l~~~g~~v~~g~~~~~~v~p~~~~~~~l~~-~~~~~~~~~~~~~e~~l~~~~~~ 404 (625)
++.|+|... ..+.++++...+ =+|=.+..+......|+||++..+.+.. .| . ....++|.|++.+..
T Consensus 10 ~~tv~N~g~-~~~~~v~~~l~~-P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp---~--~a~~G~y~v~~~a~y 77 (78)
T PF10633_consen 10 TLTVTNTGT-APLTNVSLSLSL-PEGWTVSASPASVPSLPPGESVTVTFTVTVP---A--DAAPGTYTVTVTARY 77 (78)
T ss_dssp EEEEE--SS-S-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE----T--T--SEEEEEEEEEE-
T ss_pred EEEEEECCC-CceeeEEEEEeC-CCCccccCCccccccCCCCCEEEEEEEEECC---C--CCCCceEEEEEEEEe
Confidence 478889763 345677777665 3443322222222489999999877653 12 1 133568999988863
No 49
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding []. ; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=67.80 E-value=10 Score=38.32 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=25.4
Q ss_pred EEecCCeEEE--eCCceEEEEEEcCCCcEEEEEECCEee
Q 006933 444 QENLGNTIQL--SHQNSWEIKFDIQTGAVESWKVEGVSV 480 (625)
Q Consensus 444 ~~~~~~~~~~--~~~~~~~~~fdk~~G~l~~~~~~g~~~ 480 (625)
++++++.+.| |.++.+ +.||.+|-|+|++++|.|+
T Consensus 3 ~t~sg~~~viDtga~Lvf--~V~~s~gDitSi~y~g~El 39 (249)
T PF09284_consen 3 YTDSGSNYVIDTGAGLVF--KVSKSNGDITSIKYNGTEL 39 (249)
T ss_dssp EEE-SSEEEEE---TEEE--EEETTT--EEEEEETTEE-
T ss_pred eEecCCcEEEECCCCEEE--EEecCCCCeEEEEECCEee
Confidence 4567788888 777777 9999999999999999998
No 50
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=67.21 E-value=2.8 Score=46.82 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=43.4
Q ss_pred CCcEEEEecccCcCCCC--Cc---------HHHHH----HHHHhcCCceeEeEecccCCceeeecCCCceeeeecCCCCC
Q 006933 226 TRPLILCEYSHAMGNSN--GN---------IHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290 (625)
Q Consensus 226 ~kP~i~~Eygha~gns~--g~---------~~~yw----~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~ 290 (625)
++|++++|.|.+..... +. ++++. +++..--.+.|-|.|.+.|--- ++..|.
T Consensus 355 ~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~E------------w~~Gy~- 421 (455)
T PF00232_consen 355 NPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFE------------WAEGYK- 421 (455)
T ss_dssp SSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---B------------GGGGGG-
T ss_pred CCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccc------------cccCcc-
Confidence 59999999996543221 11 23333 4554556789999999999311 110010
Q ss_pred CCCCccccccceecCC------CCCCccHHHHHHhhc
Q 006933 291 TPNDLNFCLNGLLWPD------RTPHPALHEVKYVYQ 321 (625)
Q Consensus 291 ~~~d~~f~~~Glv~~d------r~pk~~~~e~k~~~~ 321 (625)
..-||+.-| |+||++++-+|++.+
T Consensus 422 -------~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~ 451 (455)
T PF00232_consen 422 -------KRFGLVYVDFFDTLKRTPKKSAYWYKDFIR 451 (455)
T ss_dssp -------SE--SEEEETTTTTEEEEBHHHHHHHHHHH
T ss_pred -------CccCceEEcCCCCcCeeeccHHHHHHHHHH
Confidence 113777777 999999999998764
No 51
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=65.76 E-value=13 Score=36.90 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=34.0
Q ss_pred cceEEEecCCeEEE-eCCceEEEEEEcCCCcEEEEEECCEeeec
Q 006933 440 AIILQENLGNTIQL-SHQNSWEIKFDIQTGAVESWKVEGVSVMK 482 (625)
Q Consensus 440 ~~~~~~~~~~~~~~-~~~~~~~~~fdk~~G~l~~~~~~g~~~l~ 482 (625)
..+++...+..+++ ++=+++ +|+|..|.+++++|+|.+-|.
T Consensus 7 ~~V~L~~~~~~VvldNGiVqV--tls~p~G~VtgIkYnGi~NLl 48 (203)
T PF06045_consen 7 SGVTLTVQGRQVVLDNGIVQV--TLSKPGGIVTGIKYNGIDNLL 48 (203)
T ss_pred CCeEEEEcCCEEEEECCEEEE--EEcCCCceEEEEEECCEehhh
Confidence 44778888888888 665666 999999999999999996554
No 52
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=65.25 E-value=42 Score=34.63 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=47.9
Q ss_pred CCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCCh--------------hHHHHHHhhcCCeEe
Q 006933 49 NGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQH--------------PRWYELCDLFGLYMI 114 (625)
Q Consensus 49 NGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp~~--------------~~fydlcDe~Gl~V~ 114 (625)
|+..+++-|-|-- -+.|+++.-.+..|++|.+++|-+-|-+. ...-+.||++||.|+
T Consensus 43 ~~~~~viAGPCsv---------Es~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vv 113 (286)
T COG2876 43 GRALRVIAGPCSV---------ESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVV 113 (286)
T ss_pred CcceEEEecCccc---------CCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeE
Confidence 4446888888864 36899999999999999999998555441 246688999999999
Q ss_pred eeC
Q 006933 115 DEA 117 (625)
Q Consensus 115 ~E~ 117 (625)
.|+
T Consensus 114 tEv 116 (286)
T COG2876 114 TEV 116 (286)
T ss_pred EEe
Confidence 997
No 53
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=64.08 E-value=36 Score=31.35 Aligned_cols=76 Identities=13% Similarity=0.280 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCcEEEc---cC-----CCCh-------------hHHHHHHhhcCCeEeeeCccc-------ccC-cc---
Q 006933 78 KDLVLMKQNNINAVRN---SH-----YPQH-------------PRWYELCDLFGLYMIDEANIE-------THG-FY--- 125 (625)
Q Consensus 78 ~Dl~lmK~~g~NaVRt---sh-----yp~~-------------~~fydlcDe~Gl~V~~E~~~e-------~hG-~~--- 125 (625)
+-++.+|++++|+|-+ +| ||.. .++.++|-+.||-|+.-..+. .|- |.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~~ 83 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVRD 83 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeEC
Confidence 4467888999999887 22 4432 358899999999998433221 110 00
Q ss_pred c------------cccCCCCCCChHHHHHHHHHHHHHHHHh
Q 006933 126 F------------SEHLKHPTMEPSWAAAMMDRVIGMVERD 154 (625)
Q Consensus 126 ~------------~~~~~~~~~dp~~~~~~~~~~~~mV~r~ 154 (625)
. .+....+.+ ..+++.+.++++++++|+
T Consensus 84 ~~G~~~~~~~~~~~~~~~~c~n-s~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 84 ADGRPMRGERFGYPGWYTCCLN-SPYREFLLEQIREILDRY 123 (132)
T ss_pred CCCCCcCCCCcCCCCceecCCC-ccHHHHHHHHHHHHHHcC
Confidence 0 001112223 357788888899998887
No 54
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=55.15 E-value=2.4e+02 Score=30.84 Aligned_cols=196 Identities=13% Similarity=0.019 Sum_probs=101.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccC---CCC--h--------hHHHHHHhhcCCeEeee-CcccccC-cccc
Q 006933 63 HHPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---YPQ--H--------PRWYELCDLFGLYMIDE-ANIETHG-FYFS 127 (625)
Q Consensus 63 ~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtsh---yp~--~--------~~fydlcDe~Gl~V~~E-~~~e~hG-~~~~ 127 (625)
.+|..+.+.+......-++.++++|+..|=++. +|. + .++-++++++||-|..- .++..|. +..
T Consensus 21 ~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~- 99 (382)
T TIGR02631 21 RDPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKD- 99 (382)
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccC-
Confidence 356655556777788889999999999997642 332 1 25788999999987642 2322222 111
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHH--HHhCCCceEEEEEcc--CCCCCCC-----------cHHHHHHHHHHhCCCCeEe
Q 006933 128 EHLKHPTMEPSWAAAMMDRVIGMV--ERDKNHASIICWSLG--NEAGHGP-----------NHSAAAGWIRGKDPSRLLH 192 (625)
Q Consensus 128 ~~~~~~~~dp~~~~~~~~~~~~mV--~r~kNHPSIi~Wslg--NE~~~g~-----------~~~~~~~~ik~~DptRpv~ 192 (625)
+.+ .+.++..++..++++++.| .+--+-+.|.+|+.. -+..... ++..+.+++++....-.+.
T Consensus 100 g~l--as~d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~la 177 (382)
T TIGR02631 100 GGF--TSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFA 177 (382)
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 112 2457776666666666666 334477899999752 2222111 1233444444432222233
Q ss_pred ccCCCCCCCCCCcccCCCCchhHHHHHhhCCCCCC-cEEEEecccCcCCCCCcHHHHHHHHHhcCCceeEeEecccCC
Q 006933 193 YEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETR-PLILCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQ 269 (625)
Q Consensus 193 ~~~~~~~~~~~Di~s~~Y~~~~~~~~~~~~~~~~k-P~i~~Eygha~gns~g~~~~yw~~~~~~p~~~GgfiW~~~D~ 269 (625)
.|.- +.....+.+.++.......++.-.... --++-+.+|..-. ..++..+.......+++.. + ++.|+
T Consensus 178 LEp~----p~~~~~~~ll~T~~~al~li~~v~~pn~vgl~lDvgH~~~~-g~n~~~~i~~~l~~~kl~H-v--hlnD~ 247 (382)
T TIGR02631 178 LEPK----PNEPRGDILLPTVGHALAFIETLERPELFGLNPETGHEQMA-GLNFTHGIAQALWAGKLFH-I--DLNGQ 247 (382)
T ss_pred EccC----CCCCCcceecCCHHHHHHHHHHcCCccceeEEEechhHhhc-CCCHHHHHHHHHhCCCEEE-E--ecCCC
Confidence 3321 111111122345555555554432111 1266799997321 1355555443333444432 2 55664
No 55
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=52.14 E-value=1e+02 Score=31.54 Aligned_cols=88 Identities=8% Similarity=0.085 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEccC--CC--Chh-----------HHHHHHhhcCCeEeeeCcccccCccccccCCCCCCC
Q 006933 72 IESCMVKDLVLMKQNNINAVRNSH--YP--QHP-----------RWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME 136 (625)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NaVRtsh--yp--~~~-----------~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~d 136 (625)
..+.+++-+++++++|+..|++.. ++ ..+ .+.++|.++|+.+..|. |+.... .+ ..+
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn----~~~~~~-~~---~~t 154 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALET----MAGQGN-EI---GSS 154 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeC----CCCCCC-CC---CCC
Confidence 356677888889999999988832 22 111 24556667898888775 222100 00 122
Q ss_pred hHHHHHHHHHHHHHHHHhCCCceE-EEEEccCCCCCCCc
Q 006933 137 PSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPN 174 (625)
Q Consensus 137 p~~~~~~~~~~~~mV~r~kNHPSI-i~WslgNE~~~g~~ 174 (625)
.+.+.++++....||.+ +.+.++|=...|.+
T Consensus 155 -------~~~~~~li~~v~~~~~~g~~lD~~h~~~~g~~ 186 (279)
T cd00019 155 -------FEELKEIIDLIKEKPRVGVCIDTCHIFAAGYD 186 (279)
T ss_pred -------HHHHHHHHHhcCCCCCeEEEEEhhhHHhccCC
Confidence 23455566554457876 88888885544433
No 56
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=52.04 E-value=51 Score=37.07 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=44.3
Q ss_pred CcEEEEecccCcCCC--CCc---------HHHHH----HHHHhcCCceeEeEecccCCceeeecCCCceeeeecCCCCCC
Q 006933 227 RPLILCEYSHAMGNS--NGN---------IHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDT 291 (625)
Q Consensus 227 kP~i~~Eygha~gns--~g~---------~~~yw----~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~~ 291 (625)
.|++++|-|.+.... .|. ++++. +++..--.+.|-|.|.+.|---+. .| |.--||-.
T Consensus 368 ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~---~G-----y~~RfGLv 439 (467)
T TIGR01233 368 KKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWS---NG-----YEKRYGLF 439 (467)
T ss_pred CCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---cc-----ccCccceE
Confidence 379999999764321 121 22333 344444568999999999942110 01 11111110
Q ss_pred CCCccccccceecCCCCCCccHHHHHHhhc
Q 006933 292 PNDLNFCLNGLLWPDRTPHPALHEVKYVYQ 321 (625)
Q Consensus 292 ~~d~~f~~~Glv~~dr~pk~~~~e~k~~~~ 321 (625)
--|. . +..|+||++++-+|++.+
T Consensus 440 ~VD~--~-----t~~R~~K~S~~wy~~ii~ 462 (467)
T TIGR01233 440 YVDF--D-----TQERYPKKSAHWYKKLAE 462 (467)
T ss_pred EECC--C-----CCccccccHHHHHHHHHH
Confidence 0010 0 235889999999999765
No 57
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=50.02 E-value=70 Score=32.83 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCCcEEEccCCCC------h----------hHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCCh
Q 006933 74 SCMVKDLVLMKQNNINAVRNSHYPQ------H----------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEP 137 (625)
Q Consensus 74 e~~~~Dl~lmK~~g~NaVRtshyp~------~----------~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp 137 (625)
+.+++-|++++++|+..|+++-++. . ..+.++|.++|+.+..|. |... + ..++
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~----~~~~----~---~~~~ 167 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEI----MDTP----F---MNSI 167 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee----cCCc----c---cCCH
Confidence 4577888999999999999854431 1 235778889999998886 3211 1 1221
Q ss_pred HHHHHHHHHHHHHHHHhCCCceE-EEEEccCCCCCCCcHHHHHHHHHHhCCCCeEec
Q 006933 138 SWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (625)
Q Consensus 138 ~~~~~~~~~~~~mV~r~kNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~ 193 (625)
+.+.+++++ -+||.+ +.+.++|=...+.+.. +.++.+- .|.++.
T Consensus 168 -------~~~~~ll~~-v~~~~lgl~~D~~h~~~~~~~~~---~~i~~~~-~~i~~v 212 (283)
T PRK13209 168 -------SKALGYAHY-LNSPWFQLYPDIGNLSAWDNDVQ---MELQAGI-GHIVAF 212 (283)
T ss_pred -------HHHHHHHHH-hCCCccceEeccchHHHhcCCHH---HHHHhCc-CcEEEE
Confidence 234445544 377888 7788887665444432 3444332 455543
No 58
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=49.69 E-value=65 Score=36.33 Aligned_cols=87 Identities=23% Similarity=0.126 Sum_probs=47.3
Q ss_pred CCcEEEEecccCcCCC---CCc---------HHHHH----HHHHhcCCceeEeEecccCCceeeecCCCceeeeecCCCC
Q 006933 226 TRPLILCEYSHAMGNS---NGN---------IHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFG 289 (625)
Q Consensus 226 ~kP~i~~Eygha~gns---~g~---------~~~yw----~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~ 289 (625)
+.|++++|-|.+.... .|. ++++. +++..--.+.|-|.|.+.|---+....-.++|--+.-||
T Consensus 365 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~- 443 (474)
T PRK09852 365 QKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDR- 443 (474)
T ss_pred CCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECC-
Confidence 5799999999764321 221 22333 344444568999999999942111000001110010111
Q ss_pred CCCCCccccccceecCCCCCCccHHHHHHhhc
Q 006933 290 DTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQ 321 (625)
Q Consensus 290 ~~~~d~~f~~~Glv~~dr~pk~~~~e~k~~~~ 321 (625)
...|+=+..|.||++++-+|++.+
T Consensus 444 --------~~~~~~t~~R~pK~S~~wy~~ii~ 467 (474)
T PRK09852 444 --------DDAGNGTLTRTRKKSFWWYKKVIA 467 (474)
T ss_pred --------CCCCCcccceecccHHHHHHHHHH
Confidence 112333446899999999999864
No 59
>COG1470 Predicted membrane protein [Function unknown]
Probab=49.54 E-value=1e+02 Score=34.34 Aligned_cols=61 Identities=21% Similarity=0.375 Sum_probs=40.0
Q ss_pred eEEEEecCCCCCCCCeEEE------EEEEeCCEEEEEEeecCCccCCCCEEEEEeCC-CCCcccCCCCCCceEEEEEEEE
Q 006933 331 TLKISNTNFFETTQGLEFS------WVAHGDGYKLGFGILSLPLIKPHSNYEIELKS-SPWYSQWNSCSAEEIFLTVTAK 403 (625)
Q Consensus 331 ~~~v~N~~~f~~l~~~~~~------w~l~~~g~~v~~g~~~~~~v~p~~~~~~~l~~-~~~~~~~~~~~~~e~~l~~~~~ 403 (625)
.+.|.|.-. .+|.++.+. |++..++.+ + +.++||++.+|.|-. .| .- ...++|+++|+++
T Consensus 402 ~i~I~NsGn-a~LtdIkl~v~~PqgWei~Vd~~~-----I--~sL~pge~~tV~ltI~vP---~~--a~aGdY~i~i~~k 468 (513)
T COG1470 402 RISIENSGN-APLTDIKLTVNGPQGWEIEVDEST-----I--PSLEPGESKTVSLTITVP---ED--AGAGDYRITITAK 468 (513)
T ss_pred EEEEEecCC-CccceeeEEecCCccceEEECccc-----c--cccCCCCcceEEEEEEcC---CC--CCCCcEEEEEEEe
Confidence 477888763 567777664 555555442 3 588999998876642 23 21 3456999999997
Q ss_pred e
Q 006933 404 L 404 (625)
Q Consensus 404 ~ 404 (625)
.
T Consensus 469 s 469 (513)
T COG1470 469 S 469 (513)
T ss_pred e
Confidence 4
No 60
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=49.49 E-value=1.2e+02 Score=25.33 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=35.5
Q ss_pred eEEEEecCCCCCCCCeEEEEEEEeCCEEEEEEeecCCccCCCCEEEEEeCCCCCcccCCCCCCceEEEEEEE
Q 006933 331 TLKISNTNFFETTQGLEFSWVAHGDGYKLGFGILSLPLIKPHSNYEIELKSSPWYSQWNSCSAEEIFLTVTA 402 (625)
Q Consensus 331 ~~~v~N~~~f~~l~~~~~~w~l~~~g~~v~~g~~~~~~v~p~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~ 402 (625)
++.|.|.-.- +...+.+ +++.+|..+.+-.+ ..++||++..+.+...+ ...+.|.|.+.+
T Consensus 24 ~~~V~N~G~~-~~~~~~v--~~~~~~~~~~~~~i--~~L~~g~~~~v~~~~~~-------~~~G~~~i~~~i 83 (101)
T PF07705_consen 24 TVTVKNNGTA-DAENVTV--RLYLDGNSVSTVTI--PSLAPGESETVTFTWTP-------PSPGSYTIRVVI 83 (101)
T ss_dssp EEEEEE-SSS--BEEEEE--EEEETTEEEEEEEE--SEB-TTEEEEEEEEEE--------SS-CEEEEEEEE
T ss_pred EEEEEECCCC-CCCCEEE--EEEECCceeccEEE--CCcCCCcEEEEEEEEEe-------CCCCeEEEEEEE
Confidence 4678887432 2344444 45779988855444 58999999999887321 233566665555
No 61
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=48.73 E-value=39 Score=34.28 Aligned_cols=63 Identities=17% Similarity=0.112 Sum_probs=34.9
Q ss_pred CCCCcccCC-C-CchhHHHHHhhCC--CCCCcEEEEecccCcCCCCCcHH-------HHHHHHHhcCCceeEeE
Q 006933 201 PSTDIVCPM-Y-MRVWDIVMIAKDP--TETRPLILCEYSHAMGNSNGNIH-------EYWEAIDSTFGLQGGFI 263 (625)
Q Consensus 201 ~~~Di~s~~-Y-~~~~~~~~~~~~~--~~~kP~i~~Eygha~gns~g~~~-------~yw~~~~~~p~~~Ggfi 263 (625)
...|+++.| | .....+..++... .-.||+.+||||-.-+.+.+..+ +....+++.+.+.+-+.
T Consensus 136 ~~~D~iavH~Y~~~~~~~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~~~~Veryaw 209 (239)
T PF11790_consen 136 CRVDFIAVHWYGGDADDFKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDSQPYVERYAW 209 (239)
T ss_pred CCccEEEEecCCcCHHHHHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEe
Confidence 368999987 7 3445554443321 11599999999854333333322 23344455566655443
No 62
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=47.97 E-value=14 Score=31.60 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.5
Q ss_pred eCCCCeEEEEEEEEeeE
Q 006933 21 HASGPVVDCESCLVGIR 37 (625)
Q Consensus 21 ~~~g~~~d~~~~~~GfR 37 (625)
..+|+++|+.+.+||||
T Consensus 94 ~~~g~~~d~~~~~~GfR 110 (110)
T PF00703_consen 94 DDDGEVLDSIETRFGFR 110 (110)
T ss_dssp EETTEEEEEEEEEEEB-
T ss_pred EeCCEEEEEEEeEeeEC
Confidence 46888999999999999
No 63
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=47.28 E-value=71 Score=35.73 Aligned_cols=79 Identities=11% Similarity=-0.010 Sum_probs=56.5
Q ss_pred EEeeEEEEEECC-EE--------------------EECCEEEE--EEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 006933 33 LVGIRQVSKAPK-QL--------------------LVNGNPVV--IRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNIN 89 (625)
Q Consensus 33 ~~GfR~iei~~~-~f--------------------~lNGkpi~--lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~N 89 (625)
+.||+.||+-++ .| .+.+.++. +||.|.-.+. ..+.+.++.|++.+.++|+.
T Consensus 37 ~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~-----~~pddvv~~~v~~A~~~Gvd 111 (448)
T PRK12331 37 NAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYR-----NYADDVVESFVQKSVENGID 111 (448)
T ss_pred HcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccc-----cCchhhHHHHHHHHHHCCCC
Confidence 569999999644 12 12445555 7777764331 35778899999999999999
Q ss_pred EEEccCCC----ChhHHHHHHhhcCCeEeee
Q 006933 90 AVRNSHYP----QHPRWYELCDLFGLYMIDE 116 (625)
Q Consensus 90 aVRtshyp----~~~~fydlcDe~Gl~V~~E 116 (625)
.||+.... +-....+++.+.|+.|...
T Consensus 112 ~irif~~lnd~~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 112 IIRIFDALNDVRNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred EEEEEEecCcHHHHHHHHHHHHHcCCeEEEE
Confidence 99995433 3456889999999887543
No 64
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=46.66 E-value=2.9e+02 Score=30.28 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCcEEEc---cC-----CCC----------------hhHHHHHHhhcCCeEeeeCcc-cccC--ccc-cc
Q 006933 77 VKDLVLMKQNNINAVRN---SH-----YPQ----------------HPRWYELCDLFGLYMIDEANI-ETHG--FYF-SE 128 (625)
Q Consensus 77 ~~Dl~lmK~~g~NaVRt---sh-----yp~----------------~~~fydlcDe~Gl~V~~E~~~-e~hG--~~~-~~ 128 (625)
++-++++|++|+..|=+ +| +|. -.++.++|.+.||.+-.-... ..|- +.. ..
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~~~~ 163 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSLFDWFNPLYAGPTS 163 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCHHHhCCCccccccc
Confidence 34488999999998766 33 111 136999999999998753321 2121 100 00
Q ss_pred cCCCCCCChHHHHHH---HHHHHHHHHHhCCCceEEEEEccCCCCC-CCcHHHHHHHHHHhCCCC
Q 006933 129 HLKHPTMEPSWAAAM---MDRVIGMVERDKNHASIICWSLGNEAGH-GPNHSAAAGWIRGKDPSR 189 (625)
Q Consensus 129 ~~~~~~~dp~~~~~~---~~~~~~mV~r~kNHPSIi~WslgNE~~~-g~~~~~~~~~ik~~DptR 189 (625)
....+.+.+.+.+.+ ..++++++.++. |.++-+..+.+... .....++.++++++-|.-
T Consensus 164 ~~~~~~~~~~~~~y~~~~~~Ql~ELit~Yg--pd~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 164 SDEDPDNWPRFQEFVDDWLPQLRELVTRYK--PDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVK 226 (384)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhcCC--CceEEEeCCCCCccchhcHHHHHHHHHHhCCCC
Confidence 000112234444444 899999999875 56666666554322 235678999999999976
No 65
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=44.44 E-value=53 Score=33.76 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=46.4
Q ss_pred CEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCCh--------------hHHHHHHhhcCCeEee
Q 006933 50 GNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQH--------------PRWYELCDLFGLYMID 115 (625)
Q Consensus 50 Gkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp~~--------------~~fydlcDe~Gl~V~~ 115 (625)
|.+..+-|-|-. -++|++.+-.+.+|++|++.+|-+-|-+- +.+.+.|+++||-++.
T Consensus 14 ~~~~~iaGPC~v---------Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T 84 (250)
T PRK13397 14 SKNNFIVGPCSI---------ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS 84 (250)
T ss_pred CCCcEEeccCcc---------CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 334555566653 46899999999999999999988655431 4589999999999999
Q ss_pred eCc
Q 006933 116 EAN 118 (625)
Q Consensus 116 E~~ 118 (625)
|..
T Consensus 85 ev~ 87 (250)
T PRK13397 85 EIM 87 (250)
T ss_pred eeC
Confidence 873
No 66
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=44.35 E-value=2.4e+02 Score=28.69 Aligned_cols=77 Identities=9% Similarity=0.091 Sum_probs=49.6
Q ss_pred cCCCChhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCCCC
Q 006933 94 SHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP 173 (625)
Q Consensus 94 shyp~~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~g~ 173 (625)
.+.|-=++++++|...++.|..|+-...+ ..+ ....+.+.+.++++++.-.+.+++||..
T Consensus 111 ~~IPtL~evl~~~~~~~~~l~iEiK~~~~------------~~~-~~~~~~~~v~~~l~~~~~~~~~v~~s~~------- 170 (252)
T cd08574 111 QSIPSLAELLRLAKKHNKSVIFDLRRPPP------------NHP-YYQSYVNITLDTILASGIPQHQVFWLPD------- 170 (252)
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEecCCcc------------cCc-cHHHHHHHHHHHHHHcCCCcccEEEccH-------
Confidence 45666778999999888888887731100 001 1123556777888876655667777732
Q ss_pred cHHHHHHHHHHhCCCCeEec
Q 006933 174 NHSAAAGWIRGKDPSRLLHY 193 (625)
Q Consensus 174 ~~~~~~~~ik~~DptRpv~~ 193 (625)
.. .+.+|+++|..++.+
T Consensus 171 --~~-~~~~~~~~p~~~~~~ 187 (252)
T cd08574 171 --EY-RALVRKVAPGFQQVS 187 (252)
T ss_pred --HH-HHHHHHHCCCCeEee
Confidence 22 478999999877654
No 67
>PRK12677 xylose isomerase; Provisional
Probab=44.29 E-value=4.5e+02 Score=28.76 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=63.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEccC---CCC----------hhHHHHHHhhcCCeEeee-CcccccC-ccccc
Q 006933 64 HPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---YPQ----------HPRWYELCDLFGLYMIDE-ANIETHG-FYFSE 128 (625)
Q Consensus 64 ~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtsh---yp~----------~~~fydlcDe~Gl~V~~E-~~~e~hG-~~~~~ 128 (625)
+|....+-+.-...+-+..++++|+..|=++. +|. -+.+-++++++||-|..- .+.-.|. +.. +
T Consensus 21 ~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~-g 99 (384)
T PRK12677 21 DPFGDATRPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKD-G 99 (384)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccC-C
Confidence 55544445555577889999999999997742 322 246888999999997642 2221121 111 1
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHH--hCCCceEEEEEc
Q 006933 129 HLKHPTMEPSWAAAMMDRVIGMVER--DKNHASIICWSL 165 (625)
Q Consensus 129 ~~~~~~~dp~~~~~~~~~~~~mV~r--~kNHPSIi~Wsl 165 (625)
...+.++..++..++.+++.|+- .-+=|.|++|+.
T Consensus 100 --~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G 136 (384)
T PRK12677 100 --AFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGG 136 (384)
T ss_pred --cCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeC
Confidence 12245777777767777776643 347788999966
No 68
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=43.56 E-value=91 Score=35.18 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=46.6
Q ss_pred CCcEEEEecccCcCC---CCCc---------HHHHH----HHH-HhcCCceeEeEecccCCceeeecCCCceeeeecCCC
Q 006933 226 TRPLILCEYSHAMGN---SNGN---------IHEYW----EAI-DSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDF 288 (625)
Q Consensus 226 ~kP~i~~Eygha~gn---s~g~---------~~~yw----~~~-~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf 288 (625)
++|++++|-|.+.-. ..|. ++++. +++ ..--.+.|-|.|.+.|---+. +|. |.--|
T Consensus 367 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~---~G~----y~~Rf 439 (476)
T PRK09589 367 QLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAG---TGE----MKKRY 439 (476)
T ss_pred CCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecccccccccc---CCc----cccce
Confidence 579999999976422 1221 22333 344 344468999999999942111 110 00011
Q ss_pred CCCCCCccccccceecCCCCCCccHHHHHHhhc
Q 006933 289 GDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQ 321 (625)
Q Consensus 289 ~~~~~d~~f~~~Glv~~dr~pk~~~~e~k~~~~ 321 (625)
|-.-- +|...|+=+..|.||++++-+|++.+
T Consensus 440 Glv~V--D~~~~~~~t~~R~pK~S~~wy~~~i~ 470 (476)
T PRK09589 440 GFIYV--DKDNEGKGTLERSRKKSFYWYRDVIA 470 (476)
T ss_pred eeEEE--cCCCCCCcccccccccHHHHHHHHHH
Confidence 10000 01112222346899999999999764
No 69
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=43.03 E-value=62 Score=25.48 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCcEEEccC---CCChhHHHHHHhhcCCeEeeeC
Q 006933 76 MVKDLVLMKQNNINAVRNSH---YPQHPRWYELCDLFGLYMIDEA 117 (625)
Q Consensus 76 ~~~Dl~lmK~~g~NaVRtsh---yp~~~~fydlcDe~Gl~V~~E~ 117 (625)
.++-++.+|+.|+++|=++- ....+.++++|.++||.|+..+
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEE
Confidence 45568899999999997732 3345789999999999998643
No 70
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.02 E-value=1.3e+02 Score=31.21 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=47.9
Q ss_pred CCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCC-----CC---------hhHHHHHHhhcCCeEe
Q 006933 49 NGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHY-----PQ---------HPRWYELCDLFGLYMI 114 (625)
Q Consensus 49 NGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshy-----p~---------~~~fydlcDe~Gl~V~ 114 (625)
+|+.+.|-|-|-.+ +++++.+-.+.+|++|+..+|.+-+ |. -..+-++|.++||.++
T Consensus 25 ~~~~~~iaGPCsie---------~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~ 95 (266)
T PRK13398 25 GEEKIIIAGPCAVE---------SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVV 95 (266)
T ss_pred CCCEEEEEeCCcCC---------CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEE
Confidence 35556777888753 6899999999999999999999633 21 1357889999999999
Q ss_pred eeCc
Q 006933 115 DEAN 118 (625)
Q Consensus 115 ~E~~ 118 (625)
.|..
T Consensus 96 te~~ 99 (266)
T PRK13398 96 TEVM 99 (266)
T ss_pred EeeC
Confidence 9873
No 71
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=41.99 E-value=79 Score=35.67 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=46.4
Q ss_pred CCcEEEEecccCcCC---CCCc---------HHHHH----HHHH-hcCCceeEeEecccCCceeeecCCCceeeeecCCC
Q 006933 226 TRPLILCEYSHAMGN---SNGN---------IHEYW----EAID-STFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDF 288 (625)
Q Consensus 226 ~kP~i~~Eygha~gn---s~g~---------~~~yw----~~~~-~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf 288 (625)
++|++++|-|.+... ..|. ++++. +++. .--.+.|-|.|.+.|---+. .|. |.--|
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~---~G~----y~~Rf 440 (477)
T PRK15014 368 QKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFT---TGQ----YSKRY 440 (477)
T ss_pred CCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhccc---CCC----ccCcc
Confidence 579999999976422 1221 22333 3443 44568999999999942111 110 10111
Q ss_pred CCCCCCccccccceecCCCCCCccHHHHHHhhc
Q 006933 289 GDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQ 321 (625)
Q Consensus 289 ~~~~~d~~f~~~Glv~~dr~pk~~~~e~k~~~~ 321 (625)
|-.-- +|...+.=+..|.||++++-+|++.+
T Consensus 441 Gl~~V--D~~~~~~~~~~R~pK~S~~wy~~ii~ 471 (477)
T PRK15014 441 GFIYV--NKHDDGTGDMSRSRKKSFNWYKEVIA 471 (477)
T ss_pred ceEEE--CCCCCCCcccceecccHHHHHHHHHH
Confidence 10000 01111221346899999999999764
No 72
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=41.93 E-value=1.9e+02 Score=30.63 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEcc------------CCCC-------------h--hHHHHHHhhcCCeEeeeCccccc
Q 006933 70 TNIESCMVKDLVLMKQNNINAVRNS------------HYPQ-------------H--PRWYELCDLFGLYMIDEANIETH 122 (625)
Q Consensus 70 a~~~e~~~~Dl~lmK~~g~NaVRts------------hyp~-------------~--~~fydlcDe~Gl~V~~E~~~e~h 122 (625)
-++.+.+++-|..|..+.+|.+-.+ .||. + ..+.+.|.++||-|+-|+++..|
T Consensus 14 f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH 93 (311)
T cd06570 14 FIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGH 93 (311)
T ss_pred CcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccc
Confidence 3789999999999999999987653 2232 1 24789999999999999988766
Q ss_pred C
Q 006933 123 G 123 (625)
Q Consensus 123 G 123 (625)
.
T Consensus 94 ~ 94 (311)
T cd06570 94 A 94 (311)
T ss_pred h
Confidence 3
No 73
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=40.61 E-value=1.2e+02 Score=33.01 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=46.8
Q ss_pred CCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCC--------------hhHHHHHHhhcCCeEe
Q 006933 49 NGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQ--------------HPRWYELCDLFGLYMI 114 (625)
Q Consensus 49 NGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp~--------------~~~fydlcDe~Gl~V~ 114 (625)
+|++++|-|-|-- -+++.+.+..+.+|+.|+..+|-+-+-+ ...+-+.|+++||.++
T Consensus 116 ~~~~~~iaGpc~i---------E~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~ 186 (360)
T PRK12595 116 DGNQSFIFGPCSV---------ESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVI 186 (360)
T ss_pred CCCeeeEEecccc---------cCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEE
Confidence 4667777776542 4689999999999999999999743332 1357889999999999
Q ss_pred eeC
Q 006933 115 DEA 117 (625)
Q Consensus 115 ~E~ 117 (625)
.+.
T Consensus 187 t~v 189 (360)
T PRK12595 187 SEI 189 (360)
T ss_pred Eee
Confidence 887
No 74
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=39.88 E-value=99 Score=34.79 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=44.0
Q ss_pred CcEEEEecccCcCCC---CCc---------HHHHH----HHHHhcCCceeEeEecccCCceeeecCCCceeeeecCCCCC
Q 006933 227 RPLILCEYSHAMGNS---NGN---------IHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGD 290 (625)
Q Consensus 227 kP~i~~Eygha~gns---~g~---------~~~yw----~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~ 290 (625)
.|++++|-|.+.-.. .|. ++++. +++..--.+.|-|.|.+.|---+. .| |.--||-
T Consensus 369 ~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~---~G-----y~~RfGl 440 (469)
T PRK13511 369 KKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWS---NG-----YEKRYGL 440 (469)
T ss_pred CCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchh---cC-----ccCccce
Confidence 489999999763221 111 22333 344444568999999999942110 01 1111211
Q ss_pred CCCCccccccceecCCCCCCccHHHHHHhhc
Q 006933 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQ 321 (625)
Q Consensus 291 ~~~d~~f~~~Glv~~dr~pk~~~~e~k~~~~ 321 (625)
.--| |. +..|+||++++-+|++.+
T Consensus 441 ~~VD--~~-----~~~R~pK~S~~wy~~~i~ 464 (469)
T PRK13511 441 FYVD--FE-----TQERYPKKSAYWYKKLAE 464 (469)
T ss_pred EEEC--CC-----cCccccccHHHHHHHHHH
Confidence 0001 10 235899999999998764
No 75
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=38.72 E-value=2.9e+02 Score=28.01 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCCCC----h------------hHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCC
Q 006933 73 ESCMVKDLVLMKQNNINAVRNSHYPQ----H------------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME 136 (625)
Q Consensus 73 ~e~~~~Dl~lmK~~g~NaVRtshyp~----~------------~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~d 136 (625)
.+.+++-|++++.+|+..|+++.... . ..+.++|.++||.+..|. |+...... ..+
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~----~~~~~~~~----~~t 160 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEP----LTPYESNV----VCN 160 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEec----CCCCcccc----cCC
Confidence 35677788999999999999943211 1 347889999999998885 22110000 122
Q ss_pred hHHHHHHHHHHHHHHHHhCCCceE-EEEEccCCCCCCCcHHHHHHHHHHhCCCCeEec
Q 006933 137 PSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (625)
Q Consensus 137 p~~~~~~~~~~~~mV~r~kNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~ 193 (625)
.+.+.++++. -+||.| +.+.++|-...+.+ +.+.++++- .|..+.
T Consensus 161 -------~~~~~~l~~~-~~~~~v~~~~D~~h~~~~~~~---~~~~i~~~~-~rI~~v 206 (275)
T PRK09856 161 -------ANDVLHALAL-VPSPRLFSMVDICAPYVQAEP---VMSYFDKLG-DKLRHL 206 (275)
T ss_pred -------HHHHHHHHHH-cCCCcceeEEeecchhcCCCC---HHHHHHHhC-CcEEEE
Confidence 2345566653 467776 56778885555544 344555553 466554
No 76
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=37.71 E-value=62 Score=40.94 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=39.3
Q ss_pred CEEEECC-EEEEEEeeecCCCCCC-CCCCCCHHHHHHHHHHHHHcCCcEEEc
Q 006933 44 KQLLVNG-NPVVIRGVNRHEHHPR-VGKTNIESCMVKDLVLMKQNNINAVRN 93 (625)
Q Consensus 44 ~~f~lNG-kpi~lkGvN~h~~~p~-~G~a~~~e~~~~Dl~lmK~~g~NaVRt 93 (625)
-.+.||| +.+.+-|++....-+. .|. -+.+++.|..+|++|+|+|=.
T Consensus 103 P~L~i~~~~~lPl~~i~iqTvlsK~mG~---~~~w~~~L~~ik~lGyN~Ihf 151 (1464)
T TIGR01531 103 PMLYINADKFLPLDSIALQTVLAKLLGP---LSEWEPRLRVAKEKGYNMIHF 151 (1464)
T ss_pred CeeEECCCcccCcCceeeeeehhhhcCC---HHHHHHHHHHHHHcCCCEEEe
Confidence 5789999 9999999999865544 443 377999999999999999976
No 77
>PLN02361 alpha-amylase
Probab=37.24 E-value=99 Score=34.07 Aligned_cols=68 Identities=9% Similarity=0.168 Sum_probs=50.1
Q ss_pred EECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccC---------CCCh---------------hHH
Q 006933 47 LVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---------YPQH---------------PRW 102 (625)
Q Consensus 47 ~lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtsh---------yp~~---------------~~f 102 (625)
.-+|..+.+.|.++.... + ---..+.+.+..+|++|+++|=++. |.+. ..+
T Consensus 7 ~~~~~~v~lQ~F~W~~~~---~--~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~l 81 (401)
T PLN02361 7 IRNGREILLQAFNWESHK---H--DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSL 81 (401)
T ss_pred hcCCCcEEEEEEeccCCc---c--HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHH
Confidence 446899999999996421 1 1346778889999999999997621 2221 247
Q ss_pred HHHHhhcCCeEeeeCcc
Q 006933 103 YELCDLFGLYMIDEANI 119 (625)
Q Consensus 103 ydlcDe~Gl~V~~E~~~ 119 (625)
.+.|.+.||.|+.++-+
T Consensus 82 i~~~h~~gi~vi~D~V~ 98 (401)
T PLN02361 82 LRKMKQYNVRAMADIVI 98 (401)
T ss_pred HHHHHHcCCEEEEEEcc
Confidence 88999999999998854
No 78
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=37.10 E-value=1.8e+02 Score=27.37 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=48.3
Q ss_pred CCChhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCCCCcH
Q 006933 96 YPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNH 175 (625)
Q Consensus 96 yp~~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~g~~~ 175 (625)
.|.=..++++|.+ ++.+..|.-.. .. .+.+.+.+.++++++....-|+++|..
T Consensus 48 i~tL~e~l~~~~~-~~~i~leiK~~-------------~~----~~~~~~~l~~~i~~~~~~~~v~i~s~~--------- 100 (189)
T cd08556 48 IPTLEEVLELVKG-GVGLNIELKEP-------------TR----YPGLEAKVAELLREYGLEERVVVSSFD--------- 100 (189)
T ss_pred CCCHHHHHHhccc-CcEEEEEECCC-------------CC----chhHHHHHHHHHHHcCCcCCEEEEeCC---------
Confidence 4556778888887 88888776310 11 234566778888888766677777732
Q ss_pred HHHHHHHHHhCCCCeEecc
Q 006933 176 SAAAGWIRGKDPSRLLHYE 194 (625)
Q Consensus 176 ~~~~~~ik~~DptRpv~~~ 194 (625)
..+...+|+.+|.-++.+.
T Consensus 101 ~~~l~~~~~~~p~~~~~~~ 119 (189)
T cd08556 101 HEALRALKELDPEVPTGLL 119 (189)
T ss_pred HHHHHHHHHhCCCCcEEEE
Confidence 2567888999997666543
No 79
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=37.06 E-value=1.1e+02 Score=34.65 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=46.5
Q ss_pred CCcEEEEecccCcCC---CCCc---------HHHHH----HHHH-hcCCceeEeEecccCCceeeecCCCceeeeecCCC
Q 006933 226 TRPLILCEYSHAMGN---SNGN---------IHEYW----EAID-STFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDF 288 (625)
Q Consensus 226 ~kP~i~~Eygha~gn---s~g~---------~~~yw----~~~~-~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf 288 (625)
+.|++++|-|.+... ..|. ++++. +++. .--.+.|-|.|.+.|---+. .|. |.--|
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~---~G~----y~~Rf 440 (478)
T PRK09593 368 QKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAG---TGE----MKKRY 440 (478)
T ss_pred CCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhccc---CCC----ccCee
Confidence 469999999976422 1221 22333 3442 34468999999999942110 110 11111
Q ss_pred CCCCCCccccccceecCCCCCCccHHHHHHhhc
Q 006933 289 GDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQ 321 (625)
Q Consensus 289 ~~~~~d~~f~~~Glv~~dr~pk~~~~e~k~~~~ 321 (625)
|-.-- +|...++=+..|+||++++-+|++.+
T Consensus 441 Gl~~V--D~~~~~~~~~~R~pK~S~~wy~~ii~ 471 (478)
T PRK09593 441 GFIYV--DRDNEGKGTLKRSKKKSFDWYKKVIA 471 (478)
T ss_pred ceEEE--CCCCCCCcccceecccHHHHHHHHHH
Confidence 11000 11112222346889999999998764
No 80
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=36.37 E-value=2.1e+02 Score=26.41 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=34.2
Q ss_pred EEEEecCCCCCCCCeEEEEEEE-eCCEEEEEEeec-----------CCccCCCCEEEEEeCC
Q 006933 332 LKISNTNFFETTQGLEFSWVAH-GDGYKLGFGILS-----------LPLIKPHSNYEIELKS 381 (625)
Q Consensus 332 ~~v~N~~~f~~l~~~~~~w~l~-~~g~~v~~g~~~-----------~~~v~p~~~~~~~l~~ 381 (625)
..|+|..++.- .--.++-++. .+|+++.+-.+. ...++||++..|.+..
T Consensus 74 g~i~N~~~~~~-~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~ 134 (149)
T PF11906_consen 74 GTIRNRADFPQ-ALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRL 134 (149)
T ss_pred EEEEeCCCCcc-cCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEe
Confidence 57889987642 2235666676 688888887773 2378899988887763
No 81
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=36.15 E-value=1.6e+02 Score=28.03 Aligned_cols=96 Identities=18% Similarity=0.238 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCC-----CCh-------------hHHHHHHhhcCCeEeeeCcccccCccccccCCCCC
Q 006933 73 ESCMVKDLVLMKQNNINAVRNSHY-----PQH-------------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPT 134 (625)
Q Consensus 73 ~e~~~~Dl~lmK~~g~NaVRtshy-----p~~-------------~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~ 134 (625)
.+.+++-+++++.+|+..|+++-. +.. ..+.+.|.++|+.+..|. |+...... .
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~----~~~~~~~~----~ 141 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALEN----HPGPFSET----P 141 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-----SSSSSSSE----E
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEec----ccCccccc----h
Confidence 688999999999999999999622 121 247888889999998885 32211000 0
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCCCCcHHHHHHHHH
Q 006933 135 MEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGWIR 183 (625)
Q Consensus 135 ~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~g~~~~~~~~~ik 183 (625)
.. .+++.++++....--.=+.|.++|-...+.+..++.+.++
T Consensus 142 ~~-------~~~~~~~l~~~~~~~~~i~~D~~h~~~~~~~~~~~i~~~~ 183 (213)
T PF01261_consen 142 FS-------VEEIYRLLEEVDSPNVGICFDTGHLIMAGEDPDEAIKRLA 183 (213)
T ss_dssp SS-------HHHHHHHHHHHTTTTEEEEEEHHHHHHTTHHHHHHHHHHH
T ss_pred hh-------HHHHHHHHhhcCCCcceEEEehHHHHHcCCCHHHHHHHhh
Confidence 11 3456666665443336678888887766666555544444
No 82
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=35.91 E-value=3.2e+02 Score=27.10 Aligned_cols=130 Identities=12% Similarity=0.156 Sum_probs=71.5
Q ss_pred EEeeEEEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc-----cCCCChhHHHHHHh
Q 006933 33 LVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-----SHYPQHPRWYELCD 107 (625)
Q Consensus 33 ~~GfR~iei~~~~f~lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRt-----shyp~~~~fydlcD 107 (625)
..|++-||++ =++.-+|++|.++-.+--.. +|. +...-.-.+..+|++.+..-+. ...|-=+.+++++.
T Consensus 24 ~~G~~~vE~D-v~lTkDg~~Vv~HD~~l~r~---t~~--~~~i~~~t~~el~~l~~~~~~~~~~~~~~iptL~evl~~~~ 97 (233)
T cd08582 24 EQGADGIETD-VRLTKDGELVCVHDPTLKRT---SGG--DGAVSDLTLAELRKLDIGSWKGESYKGEKVPTLEEYLAIVP 97 (233)
T ss_pred HcCCCEEEEE-EEEccCCCEEEecCCccccc---cCC--CcchhhCCHHHHhcCCCCcccCCCCCCCcCCCHHHHHHHHH
Confidence 4588888884 33445777776654443111 111 1111112223345555543322 23445577999999
Q ss_pred hcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHHHHHHHHHHhC-CCceEEEEEccCCCCCCCcHHHHHHHHHHhC
Q 006933 108 LFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDK-NHASIICWSLGNEAGHGPNHSAAAGWIRGKD 186 (625)
Q Consensus 108 e~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~k-NHPSIi~WslgNE~~~g~~~~~~~~~ik~~D 186 (625)
++++.+..|+-.. ... ..+.+.+.++++++. ....|++.|.. ....+.+|+.+
T Consensus 98 ~~~~~l~ieiK~~-------------~~~----~~~~~~~~~~~~~~~~~~~~v~~~Sf~---------~~~l~~~~~~~ 151 (233)
T cd08582 98 KYGKKLFIEIKHP-------------RRG----PEAEEELLKLLKESGLLPEQIVIISFD---------AEALKRVRELA 151 (233)
T ss_pred hcCceEEEEeCCC-------------ccC----ccHHHHHHHHHHHcCCCCCCEEEEecC---------HHHHHHHHHHC
Confidence 9899888887311 011 224556777777773 33455555532 34567889999
Q ss_pred CCCeEecc
Q 006933 187 PSRLLHYE 194 (625)
Q Consensus 187 ptRpv~~~ 194 (625)
|.-++.+-
T Consensus 152 p~~~~~~l 159 (233)
T cd08582 152 PTLETLWL 159 (233)
T ss_pred CCCcEEEE
Confidence 98655543
No 83
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=35.30 E-value=63 Score=37.60 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEc---cCCCCh-----------------------hHHHHHHhhcCCeEeeeC
Q 006933 72 IESCMVKDLVLMKQNNINAVRN---SHYPQH-----------------------PRWYELCDLFGLYMIDEA 117 (625)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NaVRt---shyp~~-----------------------~~fydlcDe~Gl~V~~E~ 117 (625)
+.|...+-|..+|+||+++|=+ +-+|-+ .+|.|.|-++||.|+.+.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 6788899999999999999988 222221 369999999999999654
No 84
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=34.15 E-value=2.3e+02 Score=28.77 Aligned_cols=86 Identities=7% Similarity=-0.020 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCCcEEEccC-----CCC------hhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHH
Q 006933 74 SCMVKDLVLMKQNNINAVRNSH-----YPQ------HPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAA 142 (625)
Q Consensus 74 e~~~~Dl~lmK~~g~NaVRtsh-----yp~------~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~ 142 (625)
..+.+.++.++++|+..|=+.. +++ ...+-++++++||-|..-... |+..+ .+....++..++.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~--~~~~~---~~~~~~~~~~r~~ 87 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPE--TNGYP---YNMMLGDEHMRRE 87 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCc--ccCcC---ccccCCCHHHHHH
Confidence 3578899999999999988732 111 256888999999998653321 11100 1111245666666
Q ss_pred HHHHHHHHHHHhC--CCceEEEEE
Q 006933 143 MMDRVIGMVERDK--NHASIICWS 164 (625)
Q Consensus 143 ~~~~~~~mV~r~k--NHPSIi~Ws 164 (625)
.++.++++++.-+ .=++|++|.
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~ 111 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISA 111 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcC
Confidence 7777777775432 344555554
No 85
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=33.98 E-value=28 Score=39.26 Aligned_cols=90 Identities=19% Similarity=0.141 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEccC-----CCChh-----------HHHHHHh---hcCCeEeeeCcccccC-ccc-----
Q 006933 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQHP-----------RWYELCD---LFGLYMIDEANIETHG-FYF----- 126 (625)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NaVRtsh-----yp~~~-----------~fydlcD---e~Gl~V~~E~~~e~hG-~~~----- 126 (625)
..-++.+||+|||++|+++-|.|- .|.-. .+=+|+| +.||-.+..+. |- ...
T Consensus 89 ~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLf---HwDlPq~LeDe 165 (524)
T KOG0626|consen 89 FYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLF---HWDLPQALEDE 165 (524)
T ss_pred hhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe---cCCCCHHHHHH
Confidence 456789999999999999999953 23321 2234555 56888876653 10 000
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCC
Q 006933 127 SEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (625)
Q Consensus 127 ~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~ 170 (625)
.+.. -++...+.+++.++-..+++.++ |=.|..-||+.
T Consensus 166 YgGw----Ln~~ivedF~~yA~~CF~~fGDr--VK~WiT~NEP~ 203 (524)
T KOG0626|consen 166 YGGW----LNPEIVEDFRDYADLCFQEFGDR--VKHWITFNEPN 203 (524)
T ss_pred hccc----cCHHHHHHHHHHHHHHHHHhccc--ceeeEEecccc
Confidence 0111 34566677777777777777665 45677778774
No 86
>PRK14565 triosephosphate isomerase; Provisional
Probab=33.78 E-value=2.1e+02 Score=29.13 Aligned_cols=125 Identities=16% Similarity=0.111 Sum_probs=72.3
Q ss_pred EEEEEeeecCC--CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCC------hhHHH----HHHhhcCCeEeeeCcc
Q 006933 52 PVVIRGVNRHE--HHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQ------HPRWY----ELCDLFGLYMIDEANI 119 (625)
Q Consensus 52 pi~lkGvN~h~--~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp~------~~~fy----dlcDe~Gl~V~~E~~~ 119 (625)
.|.+-.-|.+. .-+.+|. ++ ..++|++|++.+=+.|.-. ..... ..|-+.||.++.++.-
T Consensus 56 ~i~vgAQnv~~~~~Ga~TGe-vS-------~~mLkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE 127 (237)
T PRK14565 56 NIKLGAQNCFYGSSGGYTGE-IS-------AKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGE 127 (237)
T ss_pred CceEEecccccccCCCccCc-cC-------HHHHHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35555555543 3455665 44 3567999999998877544 23344 7899999999988741
Q ss_pred cccCccccccCCCCCCChHHHHHHHHHHHHHHHHhCCCceEE----EEEccCCCC-CCCcHHHHHHHHHHhCCCCeEecc
Q 006933 120 ETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASII----CWSLGNEAG-HGPNHSAAAGWIRGKDPSRLLHYE 194 (625)
Q Consensus 120 e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi----~WslgNE~~-~g~~~~~~~~~ik~~DptRpv~~~ 194 (625)
+- . . .......+...++++..+... .|-|| .|.+|.-.. .....+++.+.+|+.++.-+|.|.
T Consensus 128 -~~--e---~----r~~~~~~~~~~~Ql~~~l~~~--~~ivIAYEPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~~~IlYG 195 (237)
T PRK14565 128 -TL--E---D----RENGMTKDVLLEQCSNCLPKH--GEFIIAYEPVWAIGGSTIPSNDAIAEAFEIIRSYDSKSHIIYG 195 (237)
T ss_pred -CH--H---H----HHccChHHHHHHHHHHHhcCC--CCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHhCCCceEEEc
Confidence 00 0 0 001112333344455444322 35555 377873221 123467888999998776677786
Q ss_pred CC
Q 006933 195 GG 196 (625)
Q Consensus 195 ~~ 196 (625)
|.
T Consensus 196 GS 197 (237)
T PRK14565 196 GS 197 (237)
T ss_pred Cc
Confidence 64
No 87
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=33.57 E-value=42 Score=34.28 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCcEEEccC---CC--Ch--------------------hHHHHHHhhcCCeEeeeCcc
Q 006933 74 SCMVKDLVLMKQNNINAVRNSH---YP--QH--------------------PRWYELCDLFGLYMIDEANI 119 (625)
Q Consensus 74 e~~~~Dl~lmK~~g~NaVRtsh---yp--~~--------------------~~fydlcDe~Gl~V~~E~~~ 119 (625)
.-+...|..+|++|+|+|-++- .| .. ..+.+.|.+.||.||.++-+
T Consensus 4 ~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeec
Confidence 4467778999999999999821 11 10 25788889999999998854
No 88
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=32.91 E-value=71 Score=30.21 Aligned_cols=49 Identities=27% Similarity=0.399 Sum_probs=37.0
Q ss_pred CeEEEEecCCCC-CCCCeEEEEEEEeCCEEEEEEeecC-CccCCCCEEEEEeC
Q 006933 330 GTLKISNTNFFE-TTQGLEFSWVAHGDGYKLGFGILSL-PLIKPHSNYEIELK 380 (625)
Q Consensus 330 ~~~~v~N~~~f~-~l~~~~~~w~l~~~g~~v~~g~~~~-~~v~p~~~~~~~l~ 380 (625)
++++|.|-.+|. .+. -+++.++.||..+.+|..-- ..|+|.+..++.++
T Consensus 54 ~t~KiyNPN~fPipVt--gl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~ 104 (161)
T COG5608 54 GTLKIYNPNPFPIPVT--GLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVP 104 (161)
T ss_pred EEEEecCCCCcceeee--ceEEEEEEcceEeeccccccceEECCCCeEEEEEE
Confidence 368899988873 223 35678899999899987742 57899988888876
No 89
>PF13663 DUF4148: Domain of unknown function (DUF4148)
Probab=32.86 E-value=47 Score=26.03 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEccC-CCCh
Q 006933 70 TNIESCMVKDLVLMKQNNINAVRNSH-YPQH 99 (625)
Q Consensus 70 a~~~e~~~~Dl~lmK~~g~NaVRtsh-yp~~ 99 (625)
..|+.+++.||..+++.|.+..+-+. ||.+
T Consensus 18 ~~TRAqV~aEL~~a~~~G~~~~~~~~~YP~~ 48 (58)
T PF13663_consen 18 PLTRAQVRAELAQAEAAGYLPSGESDSYPDD 48 (58)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCCCCCCCch
Confidence 48999999999999999999988876 8865
No 90
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=32.68 E-value=1.2e+02 Score=29.25 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=12.7
Q ss_pred CCCCCcEEEEEEEEe
Q 006933 7 AEQPNLYTLVVILKH 21 (625)
Q Consensus 7 ~e~P~LY~l~~~l~~ 21 (625)
+++|+.+++.++|..
T Consensus 114 ~~dP~~~d~~~tl~g 128 (168)
T PF14221_consen 114 APDPYYKDVRFTLEG 128 (168)
T ss_pred ccCCCceEEEEEEEE
Confidence 578999999999963
No 91
>PLN02998 beta-glucosidase
Probab=32.57 E-value=1.1e+02 Score=34.66 Aligned_cols=73 Identities=23% Similarity=0.437 Sum_probs=43.2
Q ss_pred cEEEEecccCcCCCCCc---------HHHHH----HHHHhcCCceeEeEecccCCceeeecCCCceeeeecCCCCCCCCC
Q 006933 228 PLILCEYSHAMGNSNGN---------IHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPND 294 (625)
Q Consensus 228 P~i~~Eygha~gns~g~---------~~~yw----~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d 294 (625)
|++++|-|.+... .|. ++++. +++..-=.+.|-|.|.+.|---+. +| |.--|
T Consensus 394 pI~ITENG~~~~~-~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~---~G-----y~~Rf------ 458 (497)
T PLN02998 394 PVYILENGQMTPH-SSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELF---GG-----YERSF------ 458 (497)
T ss_pred CEEEeCCCCccCC-CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---cc-----ccCcc------
Confidence 7999999965422 121 22332 344444568999999999942110 01 11111
Q ss_pred ccccccceec-------CCCCCCccHHHHHHhhc
Q 006933 295 LNFCLNGLLW-------PDRTPHPALHEVKYVYQ 321 (625)
Q Consensus 295 ~~f~~~Glv~-------~dr~pk~~~~e~k~~~~ 321 (625)
||+. ..|.||++++-+|++.+
T Consensus 459 ------GLv~VD~~~~~~~R~pK~S~~wy~~ii~ 486 (497)
T PLN02998 459 ------GLLYVDFKDPSLKRSPKLSAHWYSSFLK 486 (497)
T ss_pred ------ceEEECCCCCCcceecccHHHHHHHHHh
Confidence 2221 35889999999999865
No 92
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=32.54 E-value=1.9e+02 Score=27.61 Aligned_cols=75 Identities=9% Similarity=0.172 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCcEEEc-cCCCChhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHHHHHHHHHHhC
Q 006933 77 VKDLVLMKQNNINAVRN-SHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDK 155 (625)
Q Consensus 77 ~~Dl~lmK~~g~NaVRt-shyp~~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~k 155 (625)
...+..++++|+.+|=. +..+..+.+++.|++.||-++.-- +. +.. ...-...+..+.++-+++..-+
T Consensus 22 ~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~-~~--~~~--------~~~~~~~~~~v~~aL~~ild~~ 90 (164)
T PF03162_consen 22 PANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIP-MS--SSK--------DPWVPISEEQVAEALEIILDPR 90 (164)
T ss_dssp HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE------------------GGG----HHHHHHHHHHHH-GG
T ss_pred hhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEec-cc--ccc--------CccccCCHHHHHHHHHHHhCCC
Confidence 36778899999999754 555556789999999999887622 10 000 0000112333445555666668
Q ss_pred CCceEEE
Q 006933 156 NHASIIC 162 (625)
Q Consensus 156 NHPSIi~ 162 (625)
|||-.|.
T Consensus 91 n~PvLiH 97 (164)
T PF03162_consen 91 NYPVLIH 97 (164)
T ss_dssp G-SEEEE
T ss_pred CCCEEEE
Confidence 9998776
No 93
>PLN02814 beta-glucosidase
Probab=32.43 E-value=1.2e+02 Score=34.49 Aligned_cols=83 Identities=23% Similarity=0.359 Sum_probs=44.9
Q ss_pred CCcEEEEecccCcCCCCCc---------HHHHH----HHHHhcCCceeEeEecccCCceeeecCCCceeeeecCCCCCCC
Q 006933 226 TRPLILCEYSHAMGNSNGN---------IHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTP 292 (625)
Q Consensus 226 ~kP~i~~Eygha~gns~g~---------~~~yw----~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~~~ 292 (625)
..|++++|-|.+.-. .|. ++++. +++..-=.+.|-|.|.+.|---+. .| |.--||-.-
T Consensus 387 ~ppI~ITENG~~~~~-~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~---~G-----y~~RfGLvy 457 (504)
T PLN02814 387 NPPIYILENGMPMKH-DSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELL---GG-----YTTSFGMYY 457 (504)
T ss_pred CCCEEEECCCCCCCC-CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---cc-----ccCccceEE
Confidence 348999999965432 121 22332 344444568999999999942110 01 111111000
Q ss_pred CCccccccceecCCCCCCccHHHHHHhhcc
Q 006933 293 NDLNFCLNGLLWPDRTPHPALHEVKYVYQA 322 (625)
Q Consensus 293 ~d~~f~~~Glv~~dr~pk~~~~e~k~~~~p 322 (625)
-| +. +. +..|.||++++-+|++..-
T Consensus 458 VD--~~-~~--~~~R~pK~S~~wy~~~i~~ 482 (504)
T PLN02814 458 VN--FS-DP--GRKRSPKLSASWYTGFLNG 482 (504)
T ss_pred EC--CC-CC--CcceeeecHHHHHHHHHhc
Confidence 00 00 00 2368899999999998743
No 94
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=31.87 E-value=3.4e+02 Score=27.76 Aligned_cols=97 Identities=12% Similarity=0.064 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHcCCcEEEccCCC---C-h------------hHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCCh
Q 006933 74 SCMVKDLVLMKQNNINAVRNSHYP---Q-H------------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEP 137 (625)
Q Consensus 74 e~~~~Dl~lmK~~g~NaVRtshyp---~-~------------~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp 137 (625)
+.+++-+++++++|++.|+++.+. . . ....++|.++|+.+..|. |... + ..++
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~----~~~~----~---~~t~ 162 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI----MDTP----F---MSSI 162 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee----CCCc----h---hcCH
Confidence 457788899999999999995431 1 1 135778889999999885 2110 0 1111
Q ss_pred HHHHHHHHHHHHHHHHhCCCceE-EEEEccCCCCCCCcHHHHHHHHHHhCCCCeEec
Q 006933 138 SWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (625)
Q Consensus 138 ~~~~~~~~~~~~mV~r~kNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~ 193 (625)
.++.++++.. +||.| +.|.++|=...+.+.. +.++... .|..+.
T Consensus 163 -------~~~~~li~~v-~~~~v~~~~D~~h~~~~~~~~~---~~i~~~~-~~i~~v 207 (279)
T TIGR00542 163 -------SKWLKWDHYL-NSPWFTLYPDIGNLSAWDNDVQ---MELQLGI-DKIVAI 207 (279)
T ss_pred -------HHHHHHHHHc-CCCceEEEeCcChhhhccCCHH---HHHHHhh-hhEEEE
Confidence 2345555443 66765 5688998655555433 3344332 465554
No 95
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=31.72 E-value=2.8e+02 Score=28.36 Aligned_cols=109 Identities=14% Similarity=0.189 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCcEEEcc--CCCChhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHHHHHHHHHHh
Q 006933 77 VKDLVLMKQNNINAVRNS--HYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERD 154 (625)
Q Consensus 77 ~~Dl~lmK~~g~NaVRts--hyp~~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~ 154 (625)
.++++.+.++|++-|=.+ -.-+.+.+.++|.++|=.|+..++.. -|.. .-..|++.-.-.+.++++|+
T Consensus 87 ~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r-~g~v---------av~GW~e~s~~~~~~l~~~~ 156 (241)
T COG0106 87 LEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDAR-DGKV---------AVSGWQEDSGVELEELAKRL 156 (241)
T ss_pred HHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEcc-CCcc---------ccccccccccCCHHHHHHHH
Confidence 567777888999987763 34456678999999997776554321 0110 11123333333456666666
Q ss_pred CCCc--eEEEEEccCCCC-CCCcHHHHHHHHHHhCCCCeEeccCCC
Q 006933 155 KNHA--SIICWSLGNEAG-HGPNHSAAAGWIRGKDPSRLLHYEGGG 197 (625)
Q Consensus 155 kNHP--SIi~WslgNE~~-~g~~~~~~~~~ik~~DptRpv~~~~~~ 197 (625)
...+ .||+=.+..|.. .|.|++.+.+.++.. +.||.++|+-
T Consensus 157 ~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv 200 (241)
T COG0106 157 EEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGV 200 (241)
T ss_pred HhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCc
Confidence 6654 577778888876 478998888888888 7899998863
No 96
>PTZ00333 triosephosphate isomerase; Provisional
Probab=30.85 E-value=3.5e+02 Score=27.85 Aligned_cols=63 Identities=16% Similarity=0.042 Sum_probs=43.3
Q ss_pred ECCEEEEEEeeecCCCC--CCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCChhHH----------HHHHhhcCCeEee
Q 006933 48 VNGNPVVIRGVNRHEHH--PRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRW----------YELCDLFGLYMID 115 (625)
Q Consensus 48 lNGkpi~lkGvN~h~~~--p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp~~~~f----------ydlcDe~Gl~V~~ 115 (625)
+.+..+.+-.-|.|... +.+|. ++. .++|++|+..|=+.|.-.-..| ...|-+.||.++.
T Consensus 56 ~~~~~i~vgAQn~~~~~~Ga~TGe-vS~-------~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIl 127 (255)
T PTZ00333 56 LKNKNFKISSQNVSLTGSGAFTGE-ISA-------EMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVIL 127 (255)
T ss_pred hcCCCeeEEccccccccCCCccCc-CCH-------HHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 35555666666666443 45665 444 5779999999999886553332 5688999999998
Q ss_pred eCc
Q 006933 116 EAN 118 (625)
Q Consensus 116 E~~ 118 (625)
++.
T Consensus 128 CvG 130 (255)
T PTZ00333 128 CIG 130 (255)
T ss_pred EcC
Confidence 874
No 97
>PLN02849 beta-glucosidase
Probab=30.40 E-value=1.4e+02 Score=33.89 Aligned_cols=76 Identities=25% Similarity=0.443 Sum_probs=45.0
Q ss_pred CcEEEEecccCcCCC-CCc---------HHHHH----HHHHhcCCceeEeEecccCCceeeecCCCceeeeecCCCCCCC
Q 006933 227 RPLILCEYSHAMGNS-NGN---------IHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTP 292 (625)
Q Consensus 227 kP~i~~Eygha~gns-~g~---------~~~yw----~~~~~~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~~~ 292 (625)
.|++++|-|.+.-+. .+. ++++. +++..-=.+.|-|.|.+.|---+. .| |.--|
T Consensus 386 pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~---~G-----y~~Rf---- 453 (503)
T PLN02849 386 PPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELL---KG-----YEFSF---- 453 (503)
T ss_pred CCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---cc-----ccCcc----
Confidence 389999999664221 111 22232 445444578999999999942110 01 11111
Q ss_pred CCcccccccee-------cCCCCCCccHHHHHHhhcc
Q 006933 293 NDLNFCLNGLL-------WPDRTPHPALHEVKYVYQA 322 (625)
Q Consensus 293 ~d~~f~~~Glv-------~~dr~pk~~~~e~k~~~~p 322 (625)
||+ +..|.||++++-+|++.+-
T Consensus 454 --------GLi~VD~~~~~~~R~pK~S~~wy~~ii~~ 482 (503)
T PLN02849 454 --------GLYSVNFSDPHRKRSPKLSAHWYSAFLKG 482 (503)
T ss_pred --------ceEEECCCCCCcceecccHHHHHHHHHHh
Confidence 332 2358899999999998764
No 98
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=29.54 E-value=4.3e+02 Score=25.95 Aligned_cols=74 Identities=19% Similarity=0.104 Sum_probs=46.9
Q ss_pred CCCChhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHHHHHHHHHHhCCC-ceEEEEEccCCCCCCC
Q 006933 95 HYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNH-ASIICWSLGNEAGHGP 173 (625)
Q Consensus 95 hyp~~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~kNH-PSIi~WslgNE~~~g~ 173 (625)
+.|--++++++|.+.++.+..|+-.. ... ...+.+.+.++++++... -.|++.|.
T Consensus 85 ~iptl~evl~~~~~~~~~l~iEiK~~-------------~~~---~~~~~~~v~~~l~~~~~~~~~v~~~Sf-------- 140 (229)
T cd08562 85 PIPTLADVLELARELGLGLNLEIKPD-------------PGD---EALTARVVAAALRELWPHASKLLLSSF-------- 140 (229)
T ss_pred CCCCHHHHHHHHHhcCCEEEEEECCC-------------CCc---cHHHHHHHHHHHHHhcCCcCCEEEECC--------
Confidence 44556789999988898888887311 111 233455677777777653 34555443
Q ss_pred cHHHHHHHHHHhCCCCeEec
Q 006933 174 NHSAAAGWIRGKDPSRLLHY 193 (625)
Q Consensus 174 ~~~~~~~~ik~~DptRpv~~ 193 (625)
..++...+|+.+|.-++.+
T Consensus 141 -~~~~l~~~~~~~p~~~~~~ 159 (229)
T cd08562 141 -SLEALRAARRAAPELPLGL 159 (229)
T ss_pred -CHHHHHHHHHhCCCCcEEE
Confidence 1345677899999876654
No 99
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=29.36 E-value=51 Score=33.57 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHHHHHhCC---CceEEEEEccCCCCC-----------CCc-------HHHHHHHHHHhCCCCeEe
Q 006933 136 EPSWAAAMMDRVIGMVERDKN---HASIICWSLGNEAGH-----------GPN-------HSAAAGWIRGKDPSRLLH 192 (625)
Q Consensus 136 dp~~~~~~~~~~~~mV~r~kN---HPSIi~WslgNE~~~-----------g~~-------~~~~~~~ik~~DptRpv~ 192 (625)
++.+...+ +.-|+.++.+ .-.|=+|+|.||+.. +.. ..++++.||+.||+-.|.
T Consensus 102 ~~~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~ 176 (239)
T PF12891_consen 102 NPVYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF 176 (239)
T ss_dssp SEEEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred cHhHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 34466555 5556666554 456999999999952 011 246788999999987775
No 100
>smart00642 Aamy Alpha-amylase domain.
Probab=29.02 E-value=1.3e+02 Score=28.78 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEccC---CC----------C------h---------hHHHHHHhhcCCeEeeeCcc
Q 006933 72 IESCMVKDLVLMKQNNINAVRNSH---YP----------Q------H---------PRWYELCDLFGLYMIDEANI 119 (625)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NaVRtsh---yp----------~------~---------~~fydlcDe~Gl~V~~E~~~ 119 (625)
+-+.+.+.+..+|++|+|+|-++- .+ . + ..+.+.|-+.||.|+.++-+
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 457778888899999999997621 11 0 1 24788888999999988854
No 101
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=28.42 E-value=4.8e+02 Score=29.65 Aligned_cols=170 Identities=17% Similarity=0.244 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCceEEEEEc--cCCCCCCC-----------cHHHHHHHHHH--------hCC---CCeE
Q 006933 136 EPSWAAAMMDRVIGMVERDKNHASIICWSL--GNEAGHGP-----------NHSAAAGWIRG--------KDP---SRLL 191 (625)
Q Consensus 136 dp~~~~~~~~~~~~mV~r~kNHPSIi~Wsl--gNE~~~g~-----------~~~~~~~~ik~--------~Dp---tRpv 191 (625)
.+.|.+++.+.+.+.|+.++.| -|=+|.| .||+..+. .-+++.++||. ..+ +.++
T Consensus 199 ~~~y~~~yA~Y~vkfi~aY~~~-GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~ 277 (496)
T PF02055_consen 199 GDEYYQAYADYFVKFIQAYKKE-GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKIL 277 (496)
T ss_dssp TSHHHHHHHHHHHHHHHHHHCT-T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEE
T ss_pred CchhHHHHHHHHHHHHHHHHHC-CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 4578888999999999999888 5666654 69997531 13455666653 222 3344
Q ss_pred eccCCCCC--------------CCCCCcccCC-CCch---hHHHHHhhCCCCCCcEEEEecccCcCCC-----CCcHH--
Q 006933 192 HYEGGGSR--------------TPSTDIVCPM-YMRV---WDIVMIAKDPTETRPLILCEYSHAMGNS-----NGNIH-- 246 (625)
Q Consensus 192 ~~~~~~~~--------------~~~~Di~s~~-Y~~~---~~~~~~~~~~~~~kP~i~~Eygha~gns-----~g~~~-- 246 (625)
.+...... ...+|.++.| |... ..+....+ ..++|.++++|-+...+.. .|.+.
T Consensus 278 ~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~g~~~~~~l~~~h~-~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~ 356 (496)
T PF02055_consen 278 IYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYGGDPSPQALDQVHN-KFPDKFLLFTEACCGSWNWDTSVDLGSWDRA 356 (496)
T ss_dssp EEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTCS-HCHHHHHHHH-HSTTSEEEEEEEESS-STTS-SS-TTHHHHH
T ss_pred EEecCCcccchhhhhhhcChhhHhheeEEEEECCCCCchhhHHHHHHH-HCCCcEEEeeccccCCCCcccccccccHHHH
Confidence 44321100 1235555555 7542 22333222 2358999999986433221 23332
Q ss_pred -HHHHHHHh--cCCceeEeEecccCCceeeecCCCceeeeecCCCCCCCCCcccccc-ceecCCC---CCCccHHHHHHh
Q 006933 247 -EYWEAIDS--TFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLN-GLLWPDR---TPHPALHEVKYV 319 (625)
Q Consensus 247 -~yw~~~~~--~p~~~GgfiW~~~D~~~~~~~~~g~~~~~yggdf~~~~~d~~f~~~-Glv~~dr---~pk~~~~e~k~~ 319 (625)
.|...+-. +.+..|-.-|.++ .+..|-+-|. +++|.- .+|+.+. ...|.||.+..+
T Consensus 357 ~~y~~~ii~~lnn~~~gw~~WNl~------LD~~GGP~~~-----------~n~~d~~iivd~~~~~~~~~p~yY~~gHf 419 (496)
T PF02055_consen 357 ERYAHDIIGDLNNWVSGWIDWNLA------LDENGGPNWV-----------GNFCDAPIIVDSDTGEFYKQPEYYAMGHF 419 (496)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEESE------BETTS---TT--------------B--SEEEEGGGTEEEE-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhceeeeeeeee------cCCCCCCccc-----------CCCCCceeEEEcCCCeEEEcHHHHHHHHH
Confidence 23222211 3456666666653 1223322211 122211 3344432 237889999987
Q ss_pred hccEE
Q 006933 320 YQAIK 324 (625)
Q Consensus 320 ~~pv~ 324 (625)
-.-|+
T Consensus 420 SKFV~ 424 (496)
T PF02055_consen 420 SKFVR 424 (496)
T ss_dssp HTTS-
T ss_pred hcccC
Confidence 77663
No 102
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.02 E-value=2.4e+02 Score=27.85 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=57.3
Q ss_pred EEEEEEeeEEEEEECCEEEEC-----CEEEEEEeeecCCCCCC--------CCCCCCHHHHHHHHHHHHHcC-CcEEEc-
Q 006933 29 CESCLVGIRQVSKAPKQLLVN-----GNPVVIRGVNRHEHHPR--------VGKTNIESCMVKDLVLMKQNN-INAVRN- 93 (625)
Q Consensus 29 ~~~~~~GfR~iei~~~~f~lN-----Gkpi~lkGvN~h~~~p~--------~G~a~~~e~~~~Dl~lmK~~g-~NaVRt- 93 (625)
++-..||.|.++|++.++.|+ |++. +|.+.+-.+... .++.-+-..+...|.-||+++ =|++=.
T Consensus 38 TiGvefg~r~~~id~k~IKlqiwDtaGqe~-frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImL 116 (216)
T KOG0098|consen 38 TIGVEFGARMVTIDGKQIKLQIWDTAGQES-FRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIML 116 (216)
T ss_pred eeeeeeceeEEEEcCceEEEEEEecCCcHH-HHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEE
Confidence 345688999998887776654 3332 122221111111 123334444555666666663 555543
Q ss_pred -cCC--------CChhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHHHHHHHHHHh
Q 006933 94 -SHY--------PQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERD 154 (625)
Q Consensus 94 -shy--------p~~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r~ 154 (625)
.+- ...++==..|.++||.-+ |..- .....-.+++.+-.+++++..
T Consensus 117 iGNKsDL~~rR~Vs~EEGeaFA~ehgLifm-ETSa--------------kt~~~VEEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 117 IGNKSDLEARREVSKEEGEAFAREHGLIFM-ETSA--------------KTAENVEEAFINTAKEIYRKI 171 (216)
T ss_pred EcchhhhhccccccHHHHHHHHHHcCceee-hhhh--------------hhhhhHHHHHHHHHHHHHHHH
Confidence 221 123445667889998887 4421 012224556666667776653
No 103
>PRK09936 hypothetical protein; Provisional
Probab=27.91 E-value=5.1e+02 Score=27.30 Aligned_cols=95 Identities=9% Similarity=0.133 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEc--cCCCC-----h----hHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCC--
Q 006933 70 TNIESCMVKDLVLMKQNNINAVRN--SHYPQ-----H----PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME-- 136 (625)
Q Consensus 70 a~~~e~~~~Dl~lmK~~g~NaVRt--shyp~-----~----~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~d-- 136 (625)
.++++++++-++.+++.||+++=+ +-|-+ . ..-++.|.+.||.|+...+..-- |. ..+ ..|
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~-y~--q~~---~~d~~ 107 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPE-FF--MHQ---KQDGA 107 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChH-HH--HHH---hcCch
Confidence 489999999999999999999877 44422 1 24689999999999988764211 11 111 223
Q ss_pred --hHHHHHHHHHHHHHHHHhCCCceE--EEEEccCCCC
Q 006933 137 --PSWAAAMMDRVIGMVERDKNHASI--ICWSLGNEAG 170 (625)
Q Consensus 137 --p~~~~~~~~~~~~mV~r~kNHPSI--i~WslgNE~~ 170 (625)
++|.+....+...+.+.-++||.+ -.|=+-=|..
T Consensus 108 ~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElD 145 (296)
T PRK09936 108 ALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELD 145 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccc
Confidence 345555555555566677777766 6677776665
No 104
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=27.06 E-value=2.7e+02 Score=32.41 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=46.4
Q ss_pred EEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCCh----hHHHHHHhhcCCeEeeeC
Q 006933 53 VVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQH----PRWYELCDLFGLYMIDEA 117 (625)
Q Consensus 53 i~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp~~----~~fydlcDe~Gl~V~~E~ 117 (625)
..+||.|.-.+. ..+++.++..++++++.|+..+|+...-++ ....+.+.+.|..+...+
T Consensus 80 mL~Rg~N~vGy~-----~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i 143 (596)
T PRK14042 80 MLLRGQNLLGYR-----NYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAI 143 (596)
T ss_pred EEeccccccccc-----cCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEE
Confidence 458899874332 368899999999999999999999655554 457888999998776543
No 105
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.06 E-value=3.6e+02 Score=27.03 Aligned_cols=100 Identities=11% Similarity=0.168 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHcCCcEEEccCC--CCh--------------hHHHHHHhhcCCeEeeeCc--ccccCccccccCCCCCC
Q 006933 74 SCMVKDLVLMKQNNINAVRNSHY--PQH--------------PRWYELCDLFGLYMIDEAN--IETHGFYFSEHLKHPTM 135 (625)
Q Consensus 74 e~~~~Dl~lmK~~g~NaVRtshy--p~~--------------~~fydlcDe~Gl~V~~E~~--~e~hG~~~~~~~~~~~~ 135 (625)
+.+++-|++++++|+..||+... |.. ..+.++|.++|+.+..|.- .++.++ + ..
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~-----~---l~ 155 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGF-----F---LT 155 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCC-----h---hc
Confidence 56778888999999999998322 111 1246778899999988851 100010 0 11
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCceE-EEEEccCCCCCCCcHHHHHHHHHHhCCCCeEec
Q 006933 136 EPSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (625)
Q Consensus 136 dp~~~~~~~~~~~~mV~r~kNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~ 193 (625)
+ .+++.++|+.. +||.+ +.|.++|=...+.+..++ ++.+- .|..++
T Consensus 156 t-------~~~~~~li~~v-~~~~~~i~~D~~h~~~~~e~~~~~---i~~~~-~~i~~v 202 (254)
T TIGR03234 156 T-------TEQALAVIDDV-GRENLKLQYDLYHMQRMGGDLART---LAAYA-AHIGHV 202 (254)
T ss_pred C-------HHHHHHHHHHh-CCCCEeEeeehhhhhhhCCCHHHH---HHHhh-ccEeEE
Confidence 1 24556666544 47776 889998866666655444 44432 365554
No 106
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=26.26 E-value=1.4e+02 Score=31.90 Aligned_cols=48 Identities=25% Similarity=0.259 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEc------------cC------------C-CChhHHHHHHhhcCCeEeeeC
Q 006933 70 TNIESCMVKDLVLMKQNNINAVRN------------SH------------Y-PQHPRWYELCDLFGLYMIDEA 117 (625)
Q Consensus 70 a~~~e~~~~Dl~lmK~~g~NaVRt------------sh------------y-p~~~~fydlcDe~Gl~V~~E~ 117 (625)
+-+++.+.+-|+++|+.++|+|=+ |. + .+-+.+++.|.+.|||+|.-+
T Consensus 9 a~~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 9 AGSPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred cCCHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 346789999999999999999866 11 1 223569999999999999544
No 107
>PF11386 VERL: Vitelline envelope receptor for lysin; InterPro: IPR021526 VERL, the egg vitelline envelope (VE) receptor for lysin, is a giant unbranched glycoprotein comprising 30% of the vitelline envelope. Lysin binds to VERL and creates a hole as VERL molecules lose cohesion and splay apart. These proteins are important in the mediation of fertilisation [].
Probab=26.01 E-value=27 Score=28.65 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=23.3
Q ss_pred HHcCCcEEEccCCCChhHHHHHHhhcCCeEeeeC
Q 006933 84 KQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEA 117 (625)
Q Consensus 84 K~~g~NaVRtshyp~~~~fydlcDe~Gl~V~~E~ 117 (625)
.+.|||++|+ |||.. ++.|.-|+-|++.-
T Consensus 5 ~esgfnmmrI-~yp~n----~~~~~pg~CVf~GP 33 (78)
T PF11386_consen 5 RESGFNMMRI-YYPSN----KLLDSPGMCVFWGP 33 (78)
T ss_pred cccceEEEEE-EccCc----ccCCCCccEEEecC
Confidence 4689999998 88877 56688899887653
No 108
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.02 E-value=2.1e+02 Score=29.70 Aligned_cols=46 Identities=9% Similarity=-0.092 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccCCCCh----hHHHHHHhhcCCeEeee
Q 006933 71 NIESCMVKDLVLMKQNNINAVRNSHYPQH----PRWYELCDLFGLYMIDE 116 (625)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NaVRtshyp~~----~~fydlcDe~Gl~V~~E 116 (625)
.+.+.++.|++...+.|+..||++...++ ....+.+.++|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEE
Confidence 56677899999999999999999665443 45778889999888753
No 109
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=24.91 E-value=1.9e+02 Score=28.18 Aligned_cols=52 Identities=15% Similarity=0.309 Sum_probs=36.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCChh--H---------HHHHHhhcCCeEee
Q 006933 64 HPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHP--R---------WYELCDLFGLYMID 115 (625)
Q Consensus 64 ~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp~~~--~---------fydlcDe~Gl~V~~ 115 (625)
.|..+...+++.++.-++.+|+.|..-|-+.-.+... . +.++|+++|+-+++
T Consensus 13 ~~~~~~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~~~g~~~v~ 75 (206)
T PF04015_consen 13 PPESGATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAEEYGAELVD 75 (206)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHHhcCCcEEE
Confidence 4456888999999999999999999867774444432 3 44555555554443
No 110
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.80 E-value=1.6e+02 Score=26.19 Aligned_cols=47 Identities=11% Similarity=-0.053 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEeee
Q 006933 70 TNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDE 116 (625)
Q Consensus 70 a~~~e~~~~Dl~lmK~~g~NaVRtshyp~~~~fydlcDe~Gl~V~~E 116 (625)
.++++.+..-++.+++.|+..+=+.---..+...++|.++||-|+-.
T Consensus 62 ~~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 62 CVPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred EcCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 36889999999999999999887744466789999999999999854
No 111
>PRK04302 triosephosphate isomerase; Provisional
Probab=24.48 E-value=4.9e+02 Score=25.83 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=57.1
Q ss_pred HHHHHHcCCcEEEccCC----C--ChhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHHHHHHHHHH
Q 006933 80 LVLMKQNNINAVRNSHY----P--QHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVER 153 (625)
Q Consensus 80 l~lmK~~g~NaVRtshy----p--~~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~~~~mV~r 153 (625)
++++|++|+..|=+.|- | ....+.+.|.++||.++.+.+ ++ ++++..
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~-----------------~~-------~~~~~~--- 130 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVN-----------------NP-------ETSAAA--- 130 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcC-----------------CH-------HHHHHH---
Confidence 88899999999988663 2 234689999999999997652 11 223322
Q ss_pred hCCCceEEE----EEccCCCC---C-CCcHHHHHHHHHHhCCCCeEeccCC
Q 006933 154 DKNHASIIC----WSLGNEAG---H-GPNHSAAAGWIRGKDPSRLLHYEGG 196 (625)
Q Consensus 154 ~kNHPSIi~----WslgNE~~---~-g~~~~~~~~~ik~~DptRpv~~~~~ 196 (625)
.+.-+-+|. |.+|-..+ . .....++.+.+|+..+..||.|.++
T Consensus 131 ~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~Ggg 181 (223)
T PRK04302 131 AALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAG 181 (223)
T ss_pred hcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECC
Confidence 223455666 55553221 1 1235667788888766678888765
No 112
>PLN02784 alpha-amylase
Probab=24.39 E-value=2.7e+02 Score=33.85 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=50.1
Q ss_pred EECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccC---------CCCh---------------hHH
Q 006933 47 LVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---------YPQH---------------PRW 102 (625)
Q Consensus 47 ~lNGkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtsh---------yp~~---------------~~f 102 (625)
.-+|..+++.|.++.-. .-|. -...+.+.+..++++|+|+|=+.- |-+. ..+
T Consensus 498 ~~~~~eVmlQgF~Wds~--~dg~--w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~L 573 (894)
T PLN02784 498 TGSGFEILCQGFNWESH--KSGR--WYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDL 573 (894)
T ss_pred ccCCceEEEEeEEcCcC--CCCc--hHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHH
Confidence 44788999999998632 2232 156778889999999999996621 2111 247
Q ss_pred HHHHhhcCCeEeeeCcc
Q 006933 103 YELCDLFGLYMIDEANI 119 (625)
Q Consensus 103 ydlcDe~Gl~V~~E~~~ 119 (625)
.+.|-+.||.|+.++-+
T Consensus 574 I~a~H~~GIkVIlDiVi 590 (894)
T PLN02784 574 VKSFHEVGIKVLGDAVL 590 (894)
T ss_pred HHHHHHCCCEEEEEECc
Confidence 88899999999988744
No 113
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.38 E-value=1.6e+02 Score=31.04 Aligned_cols=56 Identities=16% Similarity=0.074 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEcc--C------CCC----------h--hHHHHHHhhcCCeEeeeCccccc
Q 006933 67 VGKTNIESCMVKDLVLMKQNNINAVRNS--H------YPQ----------H--PRWYELCDLFGLYMIDEANIETH 122 (625)
Q Consensus 67 ~G~a~~~e~~~~Dl~lmK~~g~NaVRts--h------yp~----------~--~~fydlcDe~Gl~V~~E~~~e~h 122 (625)
.|+..+.+.+++-|..|..+++|.+=.+ + +|. + .++.+.|.++||-|+-|++...|
T Consensus 10 R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH 85 (301)
T cd06565 10 RNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGH 85 (301)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHH
Confidence 3456789999999999999999998661 1 111 1 24789999999999999876544
No 114
>PLN02429 triosephosphate isomerase
Probab=24.08 E-value=5.5e+02 Score=27.36 Aligned_cols=58 Identities=17% Similarity=0.033 Sum_probs=38.6
Q ss_pred EEEEeeecCC--CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCC------hhHHHHH----HhhcCCeEeeeCc
Q 006933 53 VVIRGVNRHE--HHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQ------HPRWYEL----CDLFGLYMIDEAN 118 (625)
Q Consensus 53 i~lkGvN~h~--~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp~------~~~fydl----cDe~Gl~V~~E~~ 118 (625)
|.+-.-|.+. .-+.+|. ++. .++|++|++.|=+.|.-. ...+... |-+.||.++.++.
T Consensus 119 i~vgAQnv~~~~~GayTGE-VSa-------~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 119 IDISGQNSWVGKGGAFTGE-ISV-------EQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred CeEEecccCCCCCCCccCc-CCH-------HHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 4454555443 2344554 443 467999999998877443 3455555 9999999998874
No 115
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=23.87 E-value=6e+02 Score=28.10 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=70.7
Q ss_pred EeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcc-CCC----ChhHHHHHHhhcCCeEe-eeCcccc------cC
Q 006933 56 RGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNS-HYP----QHPRWYELCDLFGLYMI-DEANIET------HG 123 (625)
Q Consensus 56 kGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRts-hyp----~~~~fydlcDe~Gl~V~-~E~~~e~------hG 123 (625)
-|..+-.-.|..|.+-+.+.+++|+..++++.-=..|.+ |.| .-+.+=++|.+.||-+- .-.++=+ ++
T Consensus 52 ~gGtrfg~fpg~g~~R~~~E~i~D~~~v~~Lt~~~~~v~LH~~wd~vD~~elk~~A~e~GL~lda~Npn~Fs~~~~q~~~ 131 (412)
T TIGR02629 52 TGGTRFARFPGTGEPRGIFDKLEDCAVIQQLTRATPNVSLHIPWDKADPKELKARGSALGLGFDAMNSNTFSDAPGQAHS 131 (412)
T ss_pred CCCcccCcCCCCCCCCCHHHHHHHHHHHHhhcCCCCCccccCCCCcCCHHHHHHHHHHcCCccceeccccccCccccccc
Confidence 345554445777889999999999999998765444552 333 34567799999999876 2223212 23
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHHHHH--HhCCCceEEEEEc
Q 006933 124 FYFSEHLKHPTMEPSWAAAMMDRVIGMVE--RDKNHASIICWSL 165 (625)
Q Consensus 124 ~~~~~~~~~~~~dp~~~~~~~~~~~~mV~--r~kNHPSIi~Wsl 165 (625)
|. .+.+ ...||+.++.+++..++-++ +--.-+||-+|--
T Consensus 132 yk-~GSL--tnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~g 172 (412)
T TIGR02629 132 YK-FGSL--SHTDAATRRQAVEHNLECIEIGKALGSKALTVWIG 172 (412)
T ss_pred cc-cccc--CCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECC
Confidence 22 1223 23588888888887666554 3447899999986
No 116
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=23.75 E-value=1.2e+02 Score=32.05 Aligned_cols=44 Identities=23% Similarity=0.129 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEc-------cCCCC-------------------h--hHHHHHHhhcCCeEee
Q 006933 72 IESCMVKDLVLMKQNNINAVRN-------SHYPQ-------------------H--PRWYELCDLFGLYMID 115 (625)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NaVRt-------shyp~-------------------~--~~fydlcDe~Gl~V~~ 115 (625)
+++.+.+-|+.++++|||+|=+ +-||. | ..+.+.|.+.||-|..
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHA 88 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHA 88 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEE
Confidence 7899999999999999999755 11222 1 3589999999998854
No 117
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.42 E-value=4.1e+02 Score=28.79 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=44.4
Q ss_pred CCEE-EEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCC--------------hhHHHHHHhhcCCeE
Q 006933 49 NGNP-VVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQ--------------HPRWYELCDLFGLYM 113 (625)
Q Consensus 49 NGkp-i~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp~--------------~~~fydlcDe~Gl~V 113 (625)
+++| +.+-|-|-- -+++++.+-.+.+|+.|+..+|-+-|-+ -+.+-+.|+++||.+
T Consensus 98 g~~~l~vIAGPCsI---------Es~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~ 168 (352)
T PRK13396 98 ENHPVVVVAGPCSV---------ENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGI 168 (352)
T ss_pred CCCeEEEEEeCCcc---------cCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcE
Confidence 3454 556675543 4689999999999999999999532222 134677799999999
Q ss_pred eeeC
Q 006933 114 IDEA 117 (625)
Q Consensus 114 ~~E~ 117 (625)
+.|.
T Consensus 169 ~tev 172 (352)
T PRK13396 169 ITEV 172 (352)
T ss_pred EEee
Confidence 9987
No 118
>PRK01060 endonuclease IV; Provisional
Probab=23.29 E-value=5.7e+02 Score=25.98 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCcEEEcc----CCCCh--------hHHHHHHhhcCCeE---eeeCcccccCccccccCCCCCCChHHH
Q 006933 76 MVKDLVLMKQNNINAVRNS----HYPQH--------PRWYELCDLFGLYM---IDEANIETHGFYFSEHLKHPTMEPSWA 140 (625)
Q Consensus 76 ~~~Dl~lmK~~g~NaVRts----hyp~~--------~~fydlcDe~Gl~V---~~E~~~e~hG~~~~~~~~~~~~dp~~~ 140 (625)
+++-++.++++|+..|=+. |.... ..+-++|+++||-+ .. |+-.. ++.-+.++..+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~------h~~~~---~nl~~~d~~~r 84 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILV------HAPYL---INLGNPNKEIL 84 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEE------ecceE---ecCCCCCHHHH
Confidence 7788899999999999552 22111 33889999999973 32 32111 11124577777
Q ss_pred HHHHHHHHHHHHH--hCCCceEEEEEcc
Q 006933 141 AAMMDRVIGMVER--DKNHASIICWSLG 166 (625)
Q Consensus 141 ~~~~~~~~~mV~r--~kNHPSIi~Wslg 166 (625)
+..++++++.++. .-.-+.|+++...
T Consensus 85 ~~s~~~~~~~i~~A~~lga~~vv~h~G~ 112 (281)
T PRK01060 85 EKSRDFLIQEIERCAALGAKLLVFHPGS 112 (281)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 7777777777743 4466677776543
No 119
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=23.17 E-value=5.6e+02 Score=27.31 Aligned_cols=54 Identities=9% Similarity=0.104 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEccC------------CCC--------------------h--hHHHHHHhhcCCeEee
Q 006933 70 TNIESCMVKDLVLMKQNNINAVRNSH------------YPQ--------------------H--PRWYELCDLFGLYMID 115 (625)
Q Consensus 70 a~~~e~~~~Dl~lmK~~g~NaVRtsh------------yp~--------------------~--~~fydlcDe~Gl~V~~ 115 (625)
-++.+.+++-|..|....+|.+=.+- ||. . ..+.+.|.+.||-||-
T Consensus 14 f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 14 FFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 47899999999999999999976521 211 1 2478899999999999
Q ss_pred eCcccccC
Q 006933 116 EANIETHG 123 (625)
Q Consensus 116 E~~~e~hG 123 (625)
|+++..|.
T Consensus 94 EiD~PGH~ 101 (329)
T cd06568 94 EIDMPGHT 101 (329)
T ss_pred ecCCcHHH
Confidence 99887663
No 120
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=23.14 E-value=1.9e+02 Score=31.07 Aligned_cols=59 Identities=25% Similarity=0.285 Sum_probs=43.2
Q ss_pred CEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc-------cCCCC-------hhHHHHHHhhcCCeEee
Q 006933 50 GNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-------SHYPQ-------HPRWYELCDLFGLYMID 115 (625)
Q Consensus 50 Gkpi~lkGvN~h~~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRt-------shyp~-------~~~fydlcDe~Gl~V~~ 115 (625)
|+.+.|-|-|-- -+++++.+-.+.+|++|.+.+|. |-|-. -..+.+.|+++||.++.
T Consensus 92 ~~~~~IAGPCsi---------Es~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~t 162 (335)
T PRK08673 92 GKPVVIAGPCSV---------ESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVT 162 (335)
T ss_pred CceEEEEecCcc---------CCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEE
Confidence 345556665442 47899999999999999999986 22211 12477889999999999
Q ss_pred eC
Q 006933 116 EA 117 (625)
Q Consensus 116 E~ 117 (625)
|.
T Consensus 163 ev 164 (335)
T PRK08673 163 EV 164 (335)
T ss_pred ee
Confidence 87
No 121
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.10 E-value=5.4e+02 Score=26.18 Aligned_cols=88 Identities=9% Similarity=0.043 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEc----cCC-C-------ChhHHHHHHhhc-CCeEeeeCcccccCccccccCCCCCCC
Q 006933 70 TNIESCMVKDLVLMKQNNINAVRN----SHY-P-------QHPRWYELCDLF-GLYMIDEANIETHGFYFSEHLKHPTME 136 (625)
Q Consensus 70 a~~~e~~~~Dl~lmK~~g~NaVRt----shy-p-------~~~~fydlcDe~-Gl~V~~E~~~e~hG~~~~~~~~~~~~d 136 (625)
+++ ..+.+.++++|++|+..|=+ .+. + .-..+-++|+++ |+.+....+.. . .+ ...+
T Consensus 7 ~~~-~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~------~-~~--~~~~ 76 (279)
T cd00019 7 AAG-FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYL------I-NL--ASPD 76 (279)
T ss_pred ccc-ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCce------e-cc--CCCC
Confidence 445 67888999999999988733 211 1 123588999999 77766544321 0 01 1235
Q ss_pred hHHHHHHHHHHHHHHHH--hCCCceEEEEEccC
Q 006933 137 PSWAAAMMDRVIGMVER--DKNHASIICWSLGN 167 (625)
Q Consensus 137 p~~~~~~~~~~~~mV~r--~kNHPSIi~WslgN 167 (625)
+.-++..+++++++++. .-.-+.|++|....
T Consensus 77 ~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~ 109 (279)
T cd00019 77 KEKREKSIERLKDEIERCEELGIRLLVFHPGSY 109 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 55666666776666643 23566777776543
No 122
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.04 E-value=5.5e+02 Score=26.03 Aligned_cols=45 Identities=16% Similarity=0.117 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCCC-----Ch-----------hHHHHHHhhcCCeEeeeC
Q 006933 73 ESCMVKDLVLMKQNNINAVRNSHYP-----QH-----------PRWYELCDLFGLYMIDEA 117 (625)
Q Consensus 73 ~e~~~~Dl~lmK~~g~NaVRtshyp-----~~-----------~~fydlcDe~Gl~V~~E~ 117 (625)
.+.+++-|+.++.+|++.||+..+. .. ..+.++|.++|+.+..|.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 3556788889999999999985331 11 235677889999998875
No 123
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=21.76 E-value=1.3e+02 Score=31.65 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEcc------------CCCC---------------------hhHHHHHHhhcCCeEeee
Q 006933 70 TNIESCMVKDLVLMKQNNINAVRNS------------HYPQ---------------------HPRWYELCDLFGLYMIDE 116 (625)
Q Consensus 70 a~~~e~~~~Dl~lmK~~g~NaVRts------------hyp~---------------------~~~fydlcDe~Gl~V~~E 116 (625)
-++.+.+++-|..|...++|.+-.+ -||. -.++.+.|.++||-|+-|
T Consensus 12 ~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 12 FLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 4789999999999999999998652 1221 024789999999999999
Q ss_pred CcccccC
Q 006933 117 ANIETHG 123 (625)
Q Consensus 117 ~~~e~hG 123 (625)
++...|-
T Consensus 92 iD~PGH~ 98 (303)
T cd02742 92 IDMPGHS 98 (303)
T ss_pred ccchHHH
Confidence 9876663
No 124
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=21.37 E-value=3.3e+02 Score=27.96 Aligned_cols=62 Identities=16% Similarity=0.098 Sum_probs=43.3
Q ss_pred CCEEEEEEeeecCCC--CCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCC------hhHHHHH----HhhcCCeEeee
Q 006933 49 NGNPVVIRGVNRHEH--HPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQ------HPRWYEL----CDLFGLYMIDE 116 (625)
Q Consensus 49 NGkpi~lkGvN~h~~--~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp~------~~~fydl----cDe~Gl~V~~E 116 (625)
++..+.+-.-|.|.. -+.+|. ++ ..++|++|++.|=+.|.-. ....... |-+.||.++.+
T Consensus 54 ~~~~i~vgAQn~~~~~~Ga~TGe-vS-------~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvC 125 (250)
T PRK00042 54 KGSNIKLGAQNVHPEDSGAFTGE-IS-------AEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILC 125 (250)
T ss_pred cCCCeEEEecccccccCCCccCc-cC-------HHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 555677766666643 345665 44 3567999999998877543 3455555 99999999988
Q ss_pred Cc
Q 006933 117 AN 118 (625)
Q Consensus 117 ~~ 118 (625)
+.
T Consensus 126 iG 127 (250)
T PRK00042 126 VG 127 (250)
T ss_pred cC
Confidence 74
No 125
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=21.02 E-value=1.1e+02 Score=33.20 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcc-CCCCh---------hHHHHHHhhcCCeEeeeCc
Q 006933 72 IESCMVKDLVLMKQNNINAVRNS-HYPQH---------PRWYELCDLFGLYMIDEAN 118 (625)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NaVRts-hyp~~---------~~fydlcDe~Gl~V~~E~~ 118 (625)
+.+...+-|+.|+++|+..|=|| |.|.+ ..+.++|.++||.|+.+++
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 78899999999999999999885 66664 2478999999999998885
No 126
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=21.02 E-value=5.7e+02 Score=26.53 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEe-------eeCcccccCccccccCCCCCC
Q 006933 63 HHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMI-------DEANIETHGFYFSEHLKHPTM 135 (625)
Q Consensus 63 ~~p~~G~a~~~e~~~~Dl~lmK~~g~NaVRtshyp~~~~fydlcDe~Gl~V~-------~E~~~e~hG~~~~~~~~~~~~ 135 (625)
+-|..+....++.++.=.++||+.|+.+|.+-.........+...+.||-|+ +-+... -||. .-+.
T Consensus 82 DmPf~sy~~~e~a~~na~rl~~eaGa~aVkiEgg~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~-ggy~------~qgr 154 (263)
T TIGR00222 82 DLPFMSYATPEQALKNAARVMQETGANAVKLEGGEWLVETVQMLTERGVPVVGHLGLTPQSVNIL-GGYK------VQGK 154 (263)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcCcHhHHHHHHHHHHCCCCEEEecCCCceeEeec-CCee------ecCC
Confidence 3466565446677788888999999999999665444466799999999999 433211 1222 1134
Q ss_pred ChHHHHHHHHHHHHHHH
Q 006933 136 EPSWAAAMMDRVIGMVE 152 (625)
Q Consensus 136 dp~~~~~~~~~~~~mV~ 152 (625)
+++-.+..+++.+++.+
T Consensus 155 t~~~a~~~i~~A~a~e~ 171 (263)
T TIGR00222 155 DEEAAKKLLEDALALEE 171 (263)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 44445566677776665
No 127
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=20.63 E-value=4e+02 Score=26.91 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.6
Q ss_pred CCChHHHHHHHHHHHHHHHHh
Q 006933 134 TMEPSWAAAMMDRVIGMVERD 154 (625)
Q Consensus 134 ~~dp~~~~~~~~~~~~mV~r~ 154 (625)
+..|+++..+.+.++..++|.
T Consensus 240 GE~~~iq~ifi~Hik~aie~~ 260 (265)
T COG4822 240 GENPAIQAIFIDHIKDAIERD 260 (265)
T ss_pred CCcHHHHHHHHHHHHHHHhhh
Confidence 688999999999999988874
No 128
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=20.25 E-value=3.3e+02 Score=23.32 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=23.9
Q ss_pred eEEEEecCCCCCCCCeEEEEEEE---eCCEEEEEE--eecCCccCCCCEEEEEeC
Q 006933 331 TLKISNTNFFETTQGLEFSWVAH---GDGYKLGFG--ILSLPLIKPHSNYEIELK 380 (625)
Q Consensus 331 ~~~v~N~~~f~~l~~~~~~w~l~---~~g~~v~~g--~~~~~~v~p~~~~~~~l~ 380 (625)
.+.|.|+.. ...+++|++. .+|-.+... ....+.|+|+++..|..-
T Consensus 29 ~~~l~N~~~----~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~~ 79 (94)
T PF07233_consen 29 QATLSNKSS----KPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSAV 79 (94)
T ss_dssp EEEEEE-SS----S-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE
T ss_pred EEEEEECCC----CcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEEE
Confidence 467888875 2345555553 678776543 112267889988888764
No 129
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=20.22 E-value=3.1e+02 Score=27.34 Aligned_cols=113 Identities=15% Similarity=0.139 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHH-----cCCcEEEccCCCCh----hHHHHHHhhcCCeEeeeCccc---------ccCccccccCC
Q 006933 70 TNIESCMVKDLVLMKQ-----NNINAVRNSHYPQH----PRWYELCDLFGLYMIDEANIE---------THGFYFSEHLK 131 (625)
Q Consensus 70 a~~~e~~~~Dl~lmK~-----~g~NaVRtshyp~~----~~fydlcDe~Gl~V~~E~~~e---------~hG~~~~~~~~ 131 (625)
.++++.+++-++...+ .|+|.-.-|-...+ ..+++.+++.||+.+|...-. ..|...... .
T Consensus 70 ~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l~~~gl~FvDS~T~~~s~a~~~A~~~gvp~~~r-d 148 (213)
T PF04748_consen 70 GMSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVLKERGLFFVDSRTTPRSVAPQVAKELGVPAARR-D 148 (213)
T ss_dssp TS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHHHHTT-EEEE-S--TT-SHHHHHHHCT--EEE--S
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHHHHcCCEEEeCCCCcccHHHHHHHHcCCCEEee-c
Confidence 4677777777776553 45555444444443 346777777787777654210 011100000 0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCCCCcHHHHHHHHHHhCC
Q 006933 132 HPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGWIRGKDP 187 (625)
Q Consensus 132 ~~~~dp~~~~~~~~~~~~mV~r~kNHPSIi~WslgNE~~~g~~~~~~~~~ik~~Dp 187 (625)
.--++..-.+++.+++++.+..=|.+-..|+ +|. .+...++.+.+|+..++.
T Consensus 149 vfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~--Igh--~~p~Tl~~L~~~~~~l~~ 200 (213)
T PF04748_consen 149 VFLDNDQDEAAIRRQLDQAARIARKQGSAIA--IGH--PRPETLEALEEWLPELEA 200 (213)
T ss_dssp EETTST-SHHHHHHHHHHHHHHHHCCSEEEE--EEE---SCCHHHHHHHHHHHHHH
T ss_pred eecCCCCCHHHHHHHHHHHHHhhhhcCcEEE--EEc--CCHHHHHHHHHHHhHHhh
Confidence 0013334456666777777766554554444 221 112257788888877654
No 130
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=20.20 E-value=3.5e+02 Score=26.11 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCcEEEccCCCC-------hhHHHHHHhhcCCeEeeeCcccccCccccccCCCCCCChHHHHHHHHH
Q 006933 74 SCMVKDLVLMKQNNINAVRNSHYPQ-------HPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDR 146 (625)
Q Consensus 74 e~~~~Dl~lmK~~g~NaVRtshyp~-------~~~fydlcDe~Gl~V~~E~~~e~hG~~~~~~~~~~~~dp~~~~~~~~~ 146 (625)
..+.+||+.+|+.|+.+|=| --.. -+.+.+++.+.||.+. -+|++. . .-|... ...+-
T Consensus 58 RdL~~DL~~Lk~~G~~~Vvt-l~~~~EL~~l~Vp~L~~~~~~~Gi~~~-h~PI~D--------~----~aPd~~-~~~~i 122 (168)
T PF05706_consen 58 RDLQADLERLKDWGAQDVVT-LLTDHELARLGVPDLGEAAQARGIAWH-HLPIPD--------G----SAPDFA-AAWQI 122 (168)
T ss_dssp B-HHHHHHHHHHTT--EEEE--S-HHHHHHTT-TTHHHHHHHTT-EEE-E----T--------T----S---HH-HHHHH
T ss_pred chHHHHHHHHHHCCCCEEEE-eCcHHHHHHcCCccHHHHHHHcCCEEE-ecCccC--------C----CCCCHH-HHHHH
Confidence 35889999999999999966 2111 2468899999998765 444432 1 122222 23344
Q ss_pred HHHHHHHhCCCceEEEEEcc
Q 006933 147 VIGMVERDKNHASIICWSLG 166 (625)
Q Consensus 147 ~~~mV~r~kNHPSIi~Wslg 166 (625)
+.++..+.+|.-.|++=+.|
T Consensus 123 ~~eL~~~L~~g~~V~vHC~G 142 (168)
T PF05706_consen 123 LEELAARLENGRKVLVHCRG 142 (168)
T ss_dssp HHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHcCCEEEEECCC
Confidence 56666667777788876665
No 131
>PF14100 PmoA: Methane oxygenase PmoA
Probab=20.04 E-value=5e+02 Score=26.84 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=33.8
Q ss_pred CeEEEEEccccccccCCCCCCcCCCCCccccCc-cEEEEEEEEeecCCCCchhhhh
Q 006933 566 DKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAV-AYSFSIRLSPLTAATSGYGIYK 620 (625)
Q Consensus 566 ~~~~l~iD~~q~GvGg~~ScGp~~~~~Y~l~~~-~y~~~f~l~p~~~~~~~~~~~~ 620 (625)
...+++ +|-.+|++ .++.. ..++.|+++ +++++|++...+-..+++++.+
T Consensus 216 ~~W~vR-~~g~~~~~---p~~~~-~~~~~l~~G~~l~~rYr~~v~dG~~~~~~~~~ 266 (271)
T PF14100_consen 216 TPWHVR-GYGLFGAN---PAPAF-DGPLTLPPGETLTLRYRVVVHDGALDAEEAEA 266 (271)
T ss_pred cceEEe-ccCcceec---ccccc-cCceecCCCCeEEEEEEEEEeCCCCCHHHHHH
Confidence 445555 56666664 22222 667888885 5999999999888777777653
Done!