Query 006934
Match_columns 625
No_of_seqs 401 out of 2201
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 16:35:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 4.8E-29 1E-33 282.6 12.0 422 91-563 100-606 (775)
2 COG0326 HtpG Molecular chapero 99.9 3.4E-25 7.4E-30 246.3 9.3 175 92-286 4-207 (623)
3 PTZ00130 heat shock protein 90 99.9 1.2E-24 2.6E-29 249.3 8.2 186 81-287 54-270 (814)
4 PRK05218 heat shock protein 90 99.9 1.8E-21 3.9E-26 221.9 18.9 175 92-285 3-206 (613)
5 PTZ00272 heat shock protein 83 99.9 2.2E-22 4.7E-27 230.3 10.3 174 93-287 3-205 (701)
6 PRK14083 HSP90 family protein; 99.9 2E-20 4.3E-25 212.0 21.7 305 95-495 3-329 (601)
7 KOG0019 Molecular chaperone (H 99.9 5.5E-22 1.2E-26 217.2 8.7 179 90-289 32-236 (656)
8 KOG1845 MORC family ATPases [C 99.8 1.9E-21 4.1E-26 221.1 3.4 336 163-565 1-357 (775)
9 KOG0020 Endoplasmic reticulum 99.8 9.4E-21 2E-25 202.2 3.7 178 90-289 70-282 (785)
10 PF13589 HATPase_c_3: Histidin 99.7 6.3E-18 1.4E-22 158.1 2.1 97 126-227 3-100 (137)
11 PF07496 zf-CW: CW-type Zinc F 99.6 1.8E-16 3.8E-21 123.6 0.9 45 515-559 1-49 (50)
12 COG0323 MutL DNA mismatch repa 99.5 3E-13 6.4E-18 155.2 17.9 108 107-223 4-117 (638)
13 PRK00095 mutL DNA mismatch rep 99.4 1.3E-11 2.9E-16 141.7 22.4 141 105-258 1-147 (617)
14 TIGR00585 mutl DNA mismatch re 99.4 4E-12 8.6E-17 134.6 12.0 141 105-258 1-148 (312)
15 COG1389 DNA topoisomerase VI, 99.1 1.3E-10 2.9E-15 125.2 10.1 146 113-263 19-184 (538)
16 PRK05559 DNA topoisomerase IV 99.0 1.9E-09 4.2E-14 124.1 11.2 178 102-307 16-212 (631)
17 KOG1979 DNA mismatch repair pr 99.0 1.6E-09 3.4E-14 119.5 9.2 140 106-257 7-152 (694)
18 TIGR01055 parE_Gneg DNA topois 99.0 1.8E-09 3.9E-14 124.1 9.7 175 102-307 12-205 (625)
19 PRK14939 gyrB DNA gyrase subun 98.9 6.8E-09 1.5E-13 120.9 11.6 179 102-307 15-210 (756)
20 PRK05644 gyrB DNA gyrase subun 98.8 1.3E-08 2.8E-13 117.4 10.7 178 102-307 16-210 (638)
21 TIGR01059 gyrB DNA gyrase, B s 98.8 1.7E-08 3.7E-13 116.9 10.5 176 103-307 10-203 (654)
22 KOG1978 DNA mismatch repair pr 98.8 1.4E-08 3.1E-13 114.3 8.8 138 108-257 2-145 (672)
23 PRK04184 DNA topoisomerase VI 98.8 5.6E-08 1.2E-12 109.3 13.4 96 126-224 37-142 (535)
24 PRK14868 DNA topoisomerase VI 98.8 7.5E-08 1.6E-12 110.9 14.0 94 125-224 46-149 (795)
25 TIGR01052 top6b DNA topoisomer 98.7 1E-07 2.3E-12 106.1 14.1 97 124-225 27-133 (488)
26 COG0187 GyrB Type IIA topoisom 98.6 6.5E-08 1.4E-12 108.8 8.0 180 102-308 14-212 (635)
27 smart00433 TOP2c Topoisomerase 98.6 1.7E-07 3.7E-12 107.6 10.7 152 130-307 6-176 (594)
28 TIGR01058 parE_Gpos DNA topois 98.6 1.2E-07 2.7E-12 109.2 9.5 175 103-306 14-207 (637)
29 PHA02569 39 DNA topoisomerase 98.3 1.4E-06 3.1E-11 100.0 8.6 181 104-307 9-224 (602)
30 PTZ00109 DNA gyrase subunit b; 98.2 1.8E-06 4E-11 101.2 7.6 189 102-308 108-359 (903)
31 PF02518 HATPase_c: Histidine 98.2 8.9E-07 1.9E-11 78.6 3.1 88 126-221 6-98 (111)
32 PRK14867 DNA topoisomerase VI 98.2 4.7E-06 1E-10 95.9 9.5 94 126-224 37-140 (659)
33 PTZ00108 DNA topoisomerase 2-l 98.1 1E-05 2.2E-10 99.3 10.5 181 103-307 14-242 (1388)
34 PLN03128 DNA topoisomerase 2; 98.0 2.1E-05 4.6E-10 95.6 10.2 124 125-261 52-196 (1135)
35 PLN03237 DNA topoisomerase 2; 98.0 2.4E-05 5.2E-10 96.1 10.4 152 99-261 32-221 (1465)
36 KOG1977 DNA mismatch repair pr 98.0 4E-06 8.7E-11 94.6 3.4 65 109-181 4-69 (1142)
37 smart00387 HATPase_c Histidine 97.2 0.00056 1.2E-08 58.2 5.7 73 126-206 6-80 (111)
38 COG3290 CitA Signal transducti 97.2 0.0004 8.6E-09 77.8 5.7 84 125-220 427-518 (537)
39 cd00075 HATPase_c Histidine ki 97.2 0.00055 1.2E-08 57.2 4.8 85 127-220 2-92 (103)
40 PRK10604 sensor protein RstB; 97.0 0.0015 3.3E-08 72.0 7.8 89 126-221 320-411 (433)
41 PRK09470 cpxA two-component se 96.8 0.0025 5.5E-08 69.6 7.3 88 126-220 354-444 (461)
42 PRK10364 sensor protein ZraS; 96.8 0.0023 5E-08 70.6 6.8 82 126-220 349-435 (457)
43 COG0642 BaeS Signal transducti 96.7 0.0021 4.6E-08 64.9 5.3 71 124-205 227-298 (336)
44 PRK09303 adaptive-response sen 96.6 0.0057 1.2E-07 66.5 8.2 89 126-222 273-366 (380)
45 PRK10755 sensor protein BasS/P 96.6 0.0036 7.9E-08 66.5 6.5 86 125-221 247-337 (356)
46 TIGR01386 cztS_silS_copS heavy 96.6 0.0037 8.1E-08 68.0 6.3 87 126-219 354-445 (457)
47 TIGR02966 phoR_proteo phosphat 96.5 0.0095 2.1E-07 61.3 8.4 89 126-221 230-323 (333)
48 TIGR02938 nifL_nitrog nitrogen 96.5 0.005 1.1E-07 67.1 6.5 87 126-220 388-481 (494)
49 PRK09467 envZ osmolarity senso 96.4 0.005 1.1E-07 67.1 6.1 85 126-219 332-419 (435)
50 PRK11006 phoR phosphate regulo 96.3 0.0071 1.5E-07 66.4 6.9 89 125-220 317-410 (430)
51 PRK15053 dpiB sensor histidine 96.3 0.0053 1.2E-07 69.2 5.9 84 126-219 433-525 (545)
52 PRK10549 signal transduction h 96.3 0.0075 1.6E-07 66.2 6.7 88 126-220 353-445 (466)
53 PRK11086 sensory histidine kin 96.1 0.0085 1.9E-07 66.9 6.3 81 126-219 434-521 (542)
54 TIGR02916 PEP_his_kin putative 96.1 0.0085 1.8E-07 70.1 6.3 83 126-221 580-668 (679)
55 PRK11100 sensory histidine kin 96.1 0.011 2.5E-07 64.4 6.8 88 125-220 368-460 (475)
56 PRK10815 sensor protein PhoQ; 96.0 0.011 2.5E-07 66.4 6.5 83 126-219 379-464 (485)
57 PRK11360 sensory histidine kin 95.9 0.017 3.6E-07 64.6 7.0 83 126-221 501-589 (607)
58 COG4191 Signal transduction hi 95.7 0.014 3.1E-07 66.2 5.5 58 126-189 498-559 (603)
59 TIGR01925 spIIAB anti-sigma F 95.7 0.033 7.1E-07 51.4 7.1 81 125-219 39-124 (137)
60 PRK10337 sensor protein QseC; 95.5 0.025 5.4E-07 61.9 6.8 83 126-220 353-438 (449)
61 PRK15347 two component system 95.5 0.031 6.6E-07 67.1 7.6 86 126-222 514-603 (921)
62 PRK11091 aerobic respiration c 95.3 0.031 6.7E-07 66.2 6.8 92 126-222 399-494 (779)
63 TIGR03785 marine_sort_HK prote 95.2 0.043 9.4E-07 64.8 7.7 89 126-221 598-691 (703)
64 PRK11073 glnL nitrogen regulat 95.2 0.034 7.4E-07 58.7 6.1 88 126-220 238-335 (348)
65 PRK13837 two-component VirA-li 95.1 0.037 8E-07 66.4 6.9 89 126-221 561-663 (828)
66 PRK09835 sensor kinase CusS; P 95.1 0.042 9.1E-07 60.5 6.8 87 126-220 376-468 (482)
67 PRK11466 hybrid sensory histid 94.6 0.069 1.5E-06 64.3 7.5 86 126-222 562-651 (914)
68 PRK04069 serine-protein kinase 94.6 0.033 7.2E-07 53.5 3.9 84 126-219 43-131 (161)
69 PRK10490 sensor protein KdpD; 94.6 0.055 1.2E-06 65.7 6.4 87 126-221 779-870 (895)
70 TIGR02956 TMAO_torS TMAO reduc 94.5 0.075 1.6E-06 64.2 7.4 87 126-222 580-672 (968)
71 PF13581 HATPase_c_2: Histidin 94.3 0.079 1.7E-06 47.9 5.4 77 126-217 32-113 (125)
72 PRK10547 chemotaxis protein Ch 94.1 0.11 2.3E-06 61.2 7.1 86 128-221 388-511 (670)
73 TIGR01924 rsbW_low_gc serine-p 94.0 0.08 1.7E-06 50.9 5.1 85 125-219 42-131 (159)
74 PRK03660 anti-sigma F factor; 93.9 0.21 4.6E-06 46.4 7.6 80 126-219 40-124 (146)
75 PRK10841 hybrid sensory kinase 93.8 0.11 2.4E-06 63.3 6.9 89 126-222 563-656 (924)
76 KOG0787 Dehydrogenase kinase [ 93.8 0.13 2.8E-06 55.8 6.4 74 126-205 261-349 (414)
77 PRK11107 hybrid sensory histid 93.3 0.19 4.1E-06 60.3 7.6 94 126-222 409-507 (919)
78 COG3850 NarQ Signal transducti 92.9 0.16 3.5E-06 57.3 5.8 75 126-223 482-558 (574)
79 PRK13557 histidine kinase; Pro 92.8 0.26 5.6E-06 54.8 7.2 91 126-221 278-382 (540)
80 PRK10618 phosphotransfer inter 92.7 0.23 4.9E-06 60.4 7.2 91 126-222 566-661 (894)
81 COG4585 Signal transduction hi 92.1 0.17 3.7E-06 54.6 4.6 71 125-221 279-353 (365)
82 PRK09959 hybrid sensory histid 91.8 0.32 7E-06 60.5 7.2 93 126-222 829-925 (1197)
83 PRK11644 sensory histidine kin 91.4 0.21 4.6E-06 56.6 4.6 45 126-176 411-456 (495)
84 COG2205 KdpD Osmosensitive K+ 91.4 0.32 7E-06 57.5 6.0 57 127-189 777-836 (890)
85 PRK10600 nitrate/nitrite senso 91.1 0.22 4.7E-06 57.0 4.4 46 126-177 470-516 (569)
86 COG2172 RsbW Anti-sigma regula 91.1 0.5 1.1E-05 45.1 6.1 85 124-222 39-129 (146)
87 COG3920 Signal transduction hi 90.5 0.32 6.9E-06 49.6 4.4 44 128-176 125-174 (221)
88 COG0643 CheA Chemotaxis protei 89.1 0.69 1.5E-05 54.9 6.3 87 128-222 435-562 (716)
89 COG2972 Predicted signal trans 88.9 0.49 1.1E-05 53.0 4.8 53 126-182 351-407 (456)
90 PRK13560 hypothetical protein; 87.8 0.5 1.1E-05 55.3 4.1 43 129-176 715-762 (807)
91 COG5000 NtrY Signal transducti 86.4 0.81 1.8E-05 52.7 4.5 52 126-183 601-661 (712)
92 COG4192 Signal transduction hi 85.2 1.5 3.3E-05 49.0 5.7 59 126-189 565-626 (673)
93 COG5002 VicK Signal transducti 83.9 1.3 2.8E-05 48.0 4.4 71 127-205 344-417 (459)
94 PRK10935 nitrate/nitrite senso 80.4 2.1 4.6E-05 48.4 4.8 46 126-176 472-518 (565)
95 smart00249 PHD PHD zinc finger 80.2 1.2 2.7E-05 32.6 1.9 33 513-545 10-45 (47)
96 PRK13559 hypothetical protein; 79.9 1.9 4.2E-05 45.7 4.1 47 126-176 268-319 (361)
97 COG4251 Bacteriophytochrome (l 76.9 3.2 6.9E-05 48.2 4.8 71 104-183 618-691 (750)
98 COG4564 Signal transduction hi 75.0 4.1 8.8E-05 44.0 4.7 75 127-224 361-439 (459)
99 COG3852 NtrB Signal transducti 67.2 9.6 0.00021 41.0 5.3 64 126-189 242-315 (363)
100 COG3851 UhpB Signal transducti 63.9 8.6 0.00019 42.1 4.3 45 126-176 411-456 (497)
101 KOG0355 DNA topoisomerase type 62.5 18 0.00038 43.4 6.8 86 125-219 53-153 (842)
102 PF00628 PHD: PHD-finger; Int 54.2 2.5 5.4E-05 32.4 -1.3 34 512-545 9-46 (51)
103 COG3275 LytS Putative regulato 47.6 26 0.00056 39.8 4.7 43 128-176 459-507 (557)
104 COG2865 Predicted transcriptio 33.8 48 0.001 37.7 4.2 68 124-205 269-351 (467)
105 KOG1973 Chromatin remodeling p 26.7 27 0.00057 36.9 0.7 29 516-545 231-263 (274)
106 PF05180 zf-DNL: DNL zinc fing 24.3 29 0.00063 29.0 0.3 23 511-533 23-45 (66)
107 PF10664 NdhM: Cyanobacterial 20.3 1.2E+02 0.0025 27.5 3.3 50 252-312 24-74 (108)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.8e-29 Score=282.62 Aligned_cols=422 Identities=21% Similarity=0.241 Sum_probs=294.1
Q ss_pred CCCcccccccCC-------------CCceeeecCHHHHHHhhcccccCHHHHHHHHHhccccc---CCCccEEEEEecee
Q 006934 91 RPEPRAVKQAGP-------------LEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYF 154 (625)
Q Consensus 91 ~~~~~~~~~~~~-------------~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA---~At~v~I~i~~~~~ 154 (625)
++.|+.||+++. ++..++++||+|||+++++| +|.++|++||||||+|. +|+.+.|....
T Consensus 100 ~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd~I~--- 175 (775)
T KOG1845|consen 100 AIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVDYIN--- 175 (775)
T ss_pred hhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEeeeec---
Confidence 455899997762 33599999999999999999 89999999999999998 56665554221
Q ss_pred ccCCCCCCEEEEE-----eCCCCCChhhHhhhhhcccCCCCCCCCCcccccCceeeeeccccCCeEEEEEEeC------C
Q 006934 155 KKAGKDIPMLSII-----DDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------D 223 (625)
Q Consensus 155 ~~~~~~~~~L~I~-----DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~------~ 223 (625)
...+.....++|. |||+||.++-+..+|.+|++.+. +....+||||+||+++.|++|.++.|++|.. .
T Consensus 176 p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~ks 254 (775)
T KOG1845|consen 176 PVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKS 254 (775)
T ss_pred ccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCc
Confidence 1123334555555 77999999999999999998875 3468999999999999999999999999943 2
Q ss_pred CCceeEEEEEec--CCCccEEEeC----cccCCCC-cEEEEEeccchhhhhhhhhhh-----hcccCCCchhhHHHHhhh
Q 006934 224 SRSIAFLSQSLN--QGKDNLEIPI----VSYYRKG-QFMELDTVVQSEATAKYNLKS-----IKEFSPFNKYLIGEKAGL 291 (625)
Q Consensus 224 ~~s~~~ls~sf~--~g~~~i~Vp~----~~~~~~G-t~i~l~~~~~~e~~~~~~l~~-----I~kySpF~s~~I~e~~~~ 291 (625)
.+++|+++++|. ++.++++||+ ..++... -+..+..+.. ..+..++.. +++|+||.+.. +++.+
T Consensus 255 tqsiglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~--~~~~~n~~i~~~~~~L~w~p~~~~~--~~l~q 330 (775)
T KOG1845|consen 255 TQSIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSG--VDWAVNLEIEVTERFLKWSPYSHLL--DLLGQ 330 (775)
T ss_pred ceeEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeeccc--cccceeeeeHHHHHHhhcCccccHH--HHhhh
Confidence 568999999994 5788999999 5444311 1111112211 122333433 99999999841 12211
Q ss_pred ---------------cc-cCCCCcEEEEEcccccC---CcceeeccCCCCCCCCCCccceeeecccccCCCCCccccCcc
Q 006934 292 ---------------FQ-DKCTGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPL 352 (625)
Q Consensus 292 ---------------~~-~~~~GT~IiI~nL~r~~---~~~eLdf~~d~~~~~~~~~~DI~i~~~~~~~~~~~~~~~~~~ 352 (625)
+. ...+||.+|+||+++|. +-.++||+.+ +++|. -..
T Consensus 331 ~~v~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~ 386 (775)
T KOG1845|consen 331 NSVQYSKDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTY 386 (775)
T ss_pred hhhhhccccchhcchhhhccCCCceeeeechhhhcccccceeeccccC--------ccccc----------------ccc
Confidence 22 25699999999996653 3377888654 24442 024
Q ss_pred hhhHHHHHHhhhcC--CCeEEEEcCEEecccccccccCcceee--cccccc-------eEEEEEEcccccccce-ecceE
Q 006934 353 DYSLRSYLEVIFLV--PRMKIYVQGSLVRSRPLAKSLNKTCVE--TGIIMG-------KSAHLTLGRCQLEWEQ-MNCGI 420 (625)
Q Consensus 353 ~ySLRaYlsiLYL~--P~m~I~LnG~~V~~~~i~~~l~~~~v~--~~~~~~-------~~v~it~Gf~~~e~~~-~~~Gi 420 (625)
.++++.|.++||+. ++|.+.+.|+.+.++.+....+.+... .+.... ..+....||.+...+. ..+++
T Consensus 387 ~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (775)
T KOG1845|consen 387 CHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQF 466 (775)
T ss_pred hhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCC
Confidence 56889999999975 799999999999999988866554321 111100 1112234555543222 35699
Q ss_pred EEEEcCceee----eeEeeccccccCCCCceEEEEEecCcccccCCCceeeccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 006934 421 FLYWHGRLIE----AYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWD 496 (625)
Q Consensus 421 ~vY~nnRLI~----~~~kvg~q~~~~~~grGViGVve~~~l~~~~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eYw~ 496 (625)
.|||.+|||+ ++||.++. +...++++++++..+ +.+ ++|++|+|+.+-.-+.++.++.++++.||.
T Consensus 467 nV~~~~~lie~~~~~~~k~~n~--~~s~~~~~~~il~~n-~~~-------~a~~~~~v~~~~v~a~~es~~~~~~~~~~~ 536 (775)
T KOG1845|consen 467 NVSHGPRLIEHGCRPFVKIDNA--TGSLGQAVIPILVGN-FVE-------TAPDSQGVEKTIVLASSESRDKQSLNTYEE 536 (775)
T ss_pred ccccCCcchhhcccceeeecCC--Cccccccccceeccc-ccc-------cCCCccccccccccccchhhhhhccccccc
Confidence 9999999999 99999875 457899999999998 444 699999999999999999999999999999
Q ss_pred hcccccccccCCCCCC-------C-CCceecCcchhhhhccCCCCCCCCCCCCccccCCC---CCCCCCCCccccccc
Q 006934 497 NKFDSLNVVKDGALYK-------P-DQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAG 563 (625)
Q Consensus 497 ~~~~~~~~~~~~~~~~-------~-~~~WvQCd~C~KWR~lp~~~~~~~~p~~W~C~~n~---~~~~C~~pEe~~~~~ 563 (625)
..|+.+.+.....+.. . ...=-+| .+- ++. ...--..|+|..++ +++.|+-+-.....+
T Consensus 537 ~~~~~i~~~~~q~~~~~~~~~~~~Ke~~~~~~---~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (775)
T KOG1845|consen 537 KKCLRIDEAGRQLQKERESTTTVVKEEKPENN---HLS--SSK---RTQRRKSTGRAISVAVEKFNLRSGPNGRGQID 606 (775)
T ss_pred ccccccCccchhhhhhhcccceeecccccccc---hhc--chh---ccccccccccccccchhhhccccccCCcCCcc
Confidence 9999987763111111 0 0011122 111 111 12334689999998 467776655544444
No 2
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.4e-25 Score=246.28 Aligned_cols=175 Identities=26% Similarity=0.410 Sum_probs=144.3
Q ss_pred CCcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEeceec
Q 006934 92 PEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFK 155 (625)
Q Consensus 92 ~~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~----------------At~v~I~i~~~~~~ 155 (625)
.+.++|+.+....++.+ +|++++.+. +| |+|||+||.||. ...+.|.|..
T Consensus 4 ~e~~~Fq~ev~~ll~lm------ihSlYSnKe--IF--LRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~---- 69 (623)
T COG0326 4 QETRGFQAEVKQLLDLM------IHSLYSNKE--IF--LRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISF---- 69 (623)
T ss_pred hhhhhhhHHHHHHHHHH------HHhccCCcH--HH--HHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEE----
Confidence 35678888888888887 899987764 77 999999999992 1356676663
Q ss_pred cCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCC--------CC-CCCCcccccCceeeeeccccCCeEEEEEEeCCCC
Q 006934 156 KAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------DA-DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR 225 (625)
Q Consensus 156 ~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k--------~~-~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~ 225 (625)
++...+|+|.|||+|||++|+++.++ ++.|.. .. ++...||||||||||||| ++++|+|+||+.+..
T Consensus 70 --Dk~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~ 146 (623)
T COG0326 70 --DKDNKTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGED 146 (623)
T ss_pred --cccCCEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCC
Confidence 56689999999999999999999875 333321 11 467899999999999999 999999999999864
Q ss_pred ceeEEEEEecCCCccEEEeCcccCCC-CcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhHH
Q 006934 226 SIAFLSQSLNQGKDNLEIPIVSYYRK-GQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 286 (625)
Q Consensus 226 s~~~ls~sf~~g~~~i~Vp~~~~~~~-Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I~ 286 (625)
.. +.|.+ .|.+.|+|.....+.+ ||.|+||++++. +++.+|.++. |.+||.|..+||.
T Consensus 147 ~~-~~W~S--~g~g~ytv~~~~~~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~ 207 (623)
T COG0326 147 EA-YHWES--DGEGEYTVEDIDKEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIY 207 (623)
T ss_pred cc-eEEEE--cCCCceEEeeccCCCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceE
Confidence 44 47777 7888999998888885 999999999865 7999999987 9999999999885
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=99.90 E-value=1.2e-24 Score=249.26 Aligned_cols=186 Identities=24% Similarity=0.352 Sum_probs=149.8
Q ss_pred CccccccccCCCCcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCC----------------Cc
Q 006934 81 SSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TK 144 (625)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~A----------------t~ 144 (625)
.|+..+.-......++||++....++++ +++|++.. .+| |+|||+||+||.+ ..
T Consensus 54 ~~~~~~~~~~~~e~~~FQaEv~~Lldii------i~sLYS~k--eIF--LRELISNAsDAldKlr~~~lt~~~~~~~~~~ 123 (814)
T PTZ00130 54 EIEDGEKPTSGIEQHQYQTEVTRLMDII------VNSLYTQK--EVF--LRELISNAADALEKIRFLSLSDESVLGEEKK 123 (814)
T ss_pred ccccCCCCCcccceeehHHHHHHHHHHH------hhccCCCC--Cce--eehHhhhHHHHHHHHHHHHcCCchhcCCCCC
Confidence 3555566666788899999999999998 88887654 256 9999999999964 35
Q ss_pred cEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCC--------C-CCCCCcccccCceeeeeccccCCe
Q 006934 145 LEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------D-ADDPNRIGRFGVGFKTGAMRLGKD 214 (625)
Q Consensus 145 v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k--------~-~~~~~~IG~fGvGfKsA~~~lg~~ 214 (625)
+.|.|.. +.....|+|.|||+|||.++|.+.++ +++|.. . ..+...||||||||||||| +|++
T Consensus 124 ~~I~I~~------D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdk 196 (814)
T PTZ00130 124 LEIRISA------NKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADK 196 (814)
T ss_pred ceEEEEE------CCCCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheee-ecCE
Confidence 7777763 45577999999999999999998764 555431 1 1246799999999999999 9999
Q ss_pred EEEEEEeCCCCceeEEEEEecCCCccEEEeCccc---CCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhHHH
Q 006934 215 ALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY---YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 287 (625)
Q Consensus 215 v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~~~~---~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I~e 287 (625)
|+|+||+.+ ..++.|.+ .|...|.|...+. ..+||+|+||++++. +++..+.++. |.+||.|..+||+.
T Consensus 197 V~V~Trs~~--~~~~~W~s--~g~g~y~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l 270 (814)
T PTZ00130 197 VIVYTKNNN--DEQYIWES--TADAKFTIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYL 270 (814)
T ss_pred EEEEEcCCC--CceEEEEE--CCCCcEEEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEE
Confidence 999999876 35788887 6777887776442 368999999999877 7888999987 99999999999954
No 4
>PRK05218 heat shock protein 90; Provisional
Probab=99.87 E-value=1.8e-21 Score=221.90 Aligned_cols=175 Identities=25% Similarity=0.337 Sum_probs=131.8
Q ss_pred CCcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEeceec
Q 006934 92 PEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFK 155 (625)
Q Consensus 92 ~~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~----------------At~v~I~i~~~~~~ 155 (625)
.+.++|+.+....++++ .++|+ +.+..+|+|||+||+||. +....|.|..
T Consensus 3 ~e~~~Fq~e~~~ll~ll------~~~LY----s~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~---- 68 (613)
T PRK05218 3 METGEFQAEVKQLLHLM------IHSLY----SNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISF---- 68 (613)
T ss_pred cceeehhHhHHHHHHHH------hhhhc----CCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEE----
Confidence 34577888877777666 55554 445667999999999993 3455666643
Q ss_pred cCCCCCCEEEEEeCCCCCChhhHhhhh-hcccCCCC----------CCCCCcccccCceeeeeccccCCeEEEEEEeCCC
Q 006934 156 KAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS 224 (625)
Q Consensus 156 ~~~~~~~~L~I~DNG~GMt~eel~~~l-~fG~s~k~----------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~ 224 (625)
+.+...|+|.|||+||+.+++...+ .++.|.+. ..+...||+||+||+|++| ++++|+|.||+.+.
T Consensus 69 --d~~~~~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~ 145 (613)
T PRK05218 69 --DKEARTLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFM-VADKVTVITRSAGP 145 (613)
T ss_pred --cCCCCeEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhh-ccCEEEEEEcCCCC
Confidence 2345579999999999999999865 46665321 1246799999999988766 99999999999774
Q ss_pred CceeEEEEEecCCCccEEEeCcccCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhH
Q 006934 225 RSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLI 285 (625)
Q Consensus 225 ~s~~~ls~sf~~g~~~i~Vp~~~~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I 285 (625)
...++.|.+ ++...+.|...+...+||.|+++++++. ++...+.++. |.+||.|..+||
T Consensus 146 ~~~~~~w~~--~g~~~~~i~~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI 206 (613)
T PRK05218 146 AAEAVRWES--DGEGEYTIEEIEKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPI 206 (613)
T ss_pred CCceEEEEE--eCCceeEEeECCCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCE
Confidence 456888876 5666676665544468999999999876 6677777876 899999988766
No 5
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.87 E-value=2.2e-22 Score=230.33 Aligned_cols=174 Identities=25% Similarity=0.331 Sum_probs=139.1
Q ss_pred CcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceecc
Q 006934 93 EPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKK 156 (625)
Q Consensus 93 ~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~A----------------t~v~I~i~~~~~~~ 156 (625)
..++||++....++++ +|+|++.+ .+| |+|||+||+||.. ..+.|.|..
T Consensus 3 e~~~Fqae~~~Ll~ll------i~slYs~~--~if--lRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~----- 67 (701)
T PTZ00272 3 ETFAFQAEINQLMSLI------INTFYSNK--EIF--LRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVP----- 67 (701)
T ss_pred ceEecHHHHHHHHHHH------HhcccCCc--cHh--HHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEE-----
Confidence 4588999999999998 89887665 366 9999999999942 245666653
Q ss_pred CCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCC--------CCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCce
Q 006934 157 AGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSI 227 (625)
Q Consensus 157 ~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k--------~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~ 227 (625)
+.....|+|.|||+||+.+||.+.|+ ++.|.. ...+...||||||||+|+|| +|++|.|.||+.+. .
T Consensus 68 -d~~~~~L~I~DnGiGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~~--~ 143 (701)
T PTZ00272 68 -DKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNSD--E 143 (701)
T ss_pred -cCCCCEEEEEECCCCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCCC--c
Confidence 34567999999999999999998764 554421 12346799999999999999 99999999998663 5
Q ss_pred eEEEEEecCCCccEEEeCcccC--CCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhHHH
Q 006934 228 AFLSQSLNQGKDNLEIPIVSYY--RKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 287 (625)
Q Consensus 228 ~~ls~sf~~g~~~i~Vp~~~~~--~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I~e 287 (625)
++.|.+ .+...|+|...+.. .+||+|++|++++. ++..++.++. |.+||.|..+||+.
T Consensus 144 ~~~W~s--~~~g~y~i~~~~~~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l 205 (701)
T PTZ00272 144 SYVWES--SAGGTFTITSTPESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIEL 205 (701)
T ss_pred eEEEEE--CCCCcEEEEeCCCCCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEE
Confidence 899988 66677877654322 68999999999877 7888899987 99999999999953
No 6
>PRK14083 HSP90 family protein; Provisional
Probab=99.86 E-value=2e-20 Score=212.03 Aligned_cols=305 Identities=14% Similarity=0.142 Sum_probs=192.3
Q ss_pred ccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCCC----------ccEEEEEeceeccCCCCCCEE
Q 006934 95 RAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------KLEISIESIYFKKAGKDIPML 164 (625)
Q Consensus 95 ~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~At----------~v~I~i~~~~~~~~~~~~~~L 164 (625)
++||++....++.+ +.+.++.+..+|+|||+||+||.+. .|.|.+. +.+...|
T Consensus 3 ~~Fqae~~~ll~ll----------~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-------d~~~~~l 65 (601)
T PRK14083 3 HRFQVDLRGVIDLL----------SRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELT-------DAGGGTL 65 (601)
T ss_pred ccchHhHHHHHHHH----------HHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-------cCCCcEE
Confidence 45666655544433 4444456778899999999999764 4455441 2346899
Q ss_pred EEEeCCCCCChhhHhhhh-hcccCCCCC-----CCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCC
Q 006934 165 SIIDDGHGMTHQDVVRMT-YFGHKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 238 (625)
Q Consensus 165 ~I~DNG~GMt~eel~~~l-~fG~s~k~~-----~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~ 238 (625)
+|.|||+||+.+++.+.+ .+|.|.+.. .+...||+|||||+|++| +|++++|.||+.+ ...++.|.+. +.
T Consensus 66 ~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~-vad~v~V~Tr~~~-~~~~~~W~~~--~~ 141 (601)
T PRK14083 66 IVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL-VADEIVVVSRSAK-DGPAVEWRGK--AD 141 (601)
T ss_pred EEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEE-ecCEEEEEeccCC-CCceEEEEEC--CC
Confidence 999999999999999864 678776642 135689999999999988 9999999999975 3568888873 44
Q ss_pred ccEEEeCc--ccCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhHHHHhhhcccCCCCcEEEEEcccccCCcce
Q 006934 239 DNLEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYC 314 (625)
Q Consensus 239 ~~i~Vp~~--~~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r~~~~~e 314 (625)
+.+.|... +-..+||+|+++++++. ++..++.++. |.+||.|..+||.. .|+...|....
T Consensus 142 g~y~i~~~~~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l---------~~~~~~iN~~~------- 205 (601)
T PRK14083 142 GTYSVRKLETERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRV---------EGEKGGVNETP------- 205 (601)
T ss_pred CceEEEeCCCCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCccc---------CCceeeecCCC-------
Confidence 46666642 33468999999998765 6777777776 89999999998853 12222222110
Q ss_pred eeccCCCCCCCCCCccceeeecccccCCCCCccccCcchhhHHHHHHhhhc-CCCeEEEEcCEEecccccccccCcceee
Q 006934 315 LEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFL-VPRMKIYVQGSLVRSRPLAKSLNKTCVE 393 (625)
Q Consensus 315 Ldf~~d~~~~~~~~~~DI~i~~~~~~~~~~~~~~~~~~~ySLRaYlsiLYL-~P~m~I~LnG~~V~~~~i~~~l~~~~v~ 393 (625)
.-|..+ +.+|. ..+.-..+|...+|= +|-+.|.++-.- . +.
T Consensus 206 ~lW~~~--------~~eit-----------------~~~eey~~Fyk~~~~~~Pl~~ih~~~e~---~-~~--------- 247 (601)
T PRK14083 206 PPWTRD--------YPDPE-----------------TRREALLAYGEELLGFTPLDVIPLDVPS---G-GL--------- 247 (601)
T ss_pred CCccCC--------ccccC-----------------ccHHHHHHHHHHhcCCCchheeeecccc---h-hh---------
Confidence 011111 01210 011123355555553 465555554221 0 00
Q ss_pred cccccceEEEEEEcccccccceecceEEEEEcCceeee-eEeeccccccCCCCceEEEEEecCcccccCCCceeeccCCC
Q 006934 394 TGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEA-YKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQ 472 (625)
Q Consensus 394 ~~~~~~~~v~it~Gf~~~e~~~~~~Gi~vY~nnRLI~~-~~kvg~q~~~~~~grGViGVve~~~l~~~~~~~~~pthnKQ 472 (625)
..+-..++.... .....|+-+|+|+=||.- ...+-|.+ .+=|=|||+++.| | ++-+..
T Consensus 248 ------~~~Ly~iP~~~~--~~~~~~v~LY~~rVfI~d~~~~lLP~w-----l~FvrGVVDS~DL--p------LNvSRE 306 (601)
T PRK14083 248 ------EGVAYVLPYAVS--PAARRKHRVYLKRMLLSEEAENLLPDW-----AFFVRCVVNTDEL--R------PTASRE 306 (601)
T ss_pred ------eEEEEecCCCCC--ccccCceEEEeeeeEeecchhhhhHHH-----HHHheeeeecCCC--C------CccCHH
Confidence 111111222111 012468999999999953 23355543 2344599999876 3 345566
Q ss_pred CCCCchHHHHHHHHHHHHHHHHH
Q 006934 473 GFLDCEPYARLEEWLGKVADEYW 495 (625)
Q Consensus 473 dFe~t~~y~~L~~~L~e~l~eYw 495 (625)
.+.....++++.+.|.+++.++-
T Consensus 307 ~LQ~~~~l~~ir~~i~kki~~~L 329 (601)
T PRK14083 307 ALYEDDALAAVREELGEAIRKWL 329 (601)
T ss_pred HHccCHHHHHHHHHHHHHHHHHH
Confidence 67788888888888877776444
No 7
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.5e-22 Score=217.20 Aligned_cols=179 Identities=27% Similarity=0.381 Sum_probs=149.7
Q ss_pred CCCCcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCC--------------CccEEEEEeceec
Q 006934 90 SRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA--------------TKLEISIESIYFK 155 (625)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~A--------------t~v~I~i~~~~~~ 155 (625)
.+.+.++|+++....|+.+ ++++++.+. +| ++|||+||.||.. ..+.|.|.+
T Consensus 32 ~~~et~~fqaE~~qLm~li------i~s~YS~kE--vF--lRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~---- 97 (656)
T KOG0019|consen 32 EPQETHEFQAETNQLMDIV------AKSLYSHKE--VF--LRELISNASDALEKLRYLELKGDEKALPELEIRIIT---- 97 (656)
T ss_pred ccccceehhhhHHhHHHHH------HHHhhcchH--HH--HHhhhccccchHHHHHHHhhcCccccccceeEEecc----
Confidence 3447899999999999988 898876653 78 9999999999932 467777764
Q ss_pred cCCCCCCEEEEEeCCCCCChhhHhhhhh---------cccCCC-CCCCCCcccccCceeeeeccccCCeEEEEEEeCCCC
Q 006934 156 KAGKDIPMLSIIDDGHGMTHQDVVRMTY---------FGHKQP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR 225 (625)
Q Consensus 156 ~~~~~~~~L~I~DNG~GMt~eel~~~l~---------fG~s~k-~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~ 225 (625)
+.....|+|.|+|+|||++||.++++ |....+ ..++.+.|||||+|||+|+| ++++|.|+||+.+..
T Consensus 98 --nk~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e 174 (656)
T KOG0019|consen 98 --NKDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE 174 (656)
T ss_pred --CCCcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc
Confidence 56788999999999999999999986 333334 34567899999999999999 999999999998764
Q ss_pred ceeEEEEEecCCCccEEEeCcccCCCCcEEEEEecc-chhhhhhhhhhh-hcccCCCchhhHHHHh
Q 006934 226 SIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVV-QSEATAKYNLKS-IKEFSPFNKYLIGEKA 289 (625)
Q Consensus 226 s~~~ls~sf~~g~~~i~Vp~~~~~~~Gt~i~l~~~~-~~e~~~~~~l~~-I~kySpF~s~~I~e~~ 289 (625)
++.|.+ .+...++|...+...+||+|++|++. +++++.+..++. |.|||.|.++||+-..
T Consensus 175 --~y~Wes--~~~gs~~v~~~~~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~ 236 (656)
T KOG0019|consen 175 --GLQWTS--NGRGSYEIAEASGLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNG 236 (656)
T ss_pred --ceeeec--CCCCceEEeeccCccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhh
Confidence 888887 67778888877777899999999997 558999989887 9999999999997543
No 8
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.9e-21 Score=221.13 Aligned_cols=336 Identities=21% Similarity=0.275 Sum_probs=241.8
Q ss_pred EEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecC--CCcc
Q 006934 163 MLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ--GKDN 240 (625)
Q Consensus 163 ~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~--g~~~ 240 (625)
+|++.|||.||+++++..+..|+. ....||+||+|+|+++|++|+++.++|+.....++++++++|++ ....
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~------~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sqt~~e~~~~~~ 74 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV------GLYGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQTFHESEADDA 74 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc------cccccccccCcccccccccCcccceeeccccccceeeeeccccccccccc
Confidence 478899999999999999988833 46789999999999999999999999999999999999999964 4677
Q ss_pred EEEeCcccCCCCcEEEEEeccchhhhhhhhhhhhcccCCCchh--hHHHHhhhcccCCCCcEEEEEccccc-CCcceeec
Q 006934 241 LEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKY--LIGEKAGLFQDKCTGTQIYIWNLDQW-GSNYCLEW 317 (625)
Q Consensus 241 i~Vp~~~~~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~--~I~e~~~~~~~~~~GT~IiI~nL~r~-~~~~eLdf 317 (625)
++||+++|+.++..+.. .....+++.|.+||+|... .+.++...+ ....||.++|.|+++. ++..+++|
T Consensus 75 vvvP~~t~~~~~~~~~~-------~k~~~~l~~~~c~sfwKag~~~~a~~~~~~-~~~G~~~~iivhpkflhsnatshk~ 146 (775)
T KOG1845|consen 75 VVVPCPTFNPRTREIVT-------EKFAFSLEAIYCRSFWKAGDYLLAELDVII-GKSGGTLHIIVHPKFLHSNATSHKW 146 (775)
T ss_pred ceecccccccccccccc-------cccccccchhhhcCcccccchhccccccee-ccCCceeEEEEehhhhcCCCccccc
Confidence 89999999988876553 1234477889999999973 222222222 1234588888888876 45688888
Q ss_pred cCCCCCCCCCCccceeeecccccCCCCCccccCcchhhHHHHHHhhhcCCCeEEEEcCEEecccccccccC--cceeecc
Q 006934 318 DNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLN--KTCVETG 395 (625)
Q Consensus 318 ~~d~~~~~~~~~~DI~i~~~~~~~~~~~~~~~~~~~ySLRaYlsiLYL~P~m~I~LnG~~V~~~~i~~~l~--~~~v~~~ 395 (625)
..| +.||++++.- ++++- =+.|+.++|++|.|.|++++..|+...+..+-. .+++.+.
T Consensus 147 a~~--------a~aeLldnal---------DEi~~---~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~ 206 (775)
T KOG1845|consen 147 AKG--------AIAELLDNAL---------DEITN---GATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRK 206 (775)
T ss_pred ccC--------hhhhhccccc---------ccccc---ccceEEeeeecccccccceeEEeeccceeccccccCHHHHHH
Confidence 766 3688877531 12232 234599999999999999999999876544321 1222111
Q ss_pred ----------cccceEEEEEEcccccccceecceEEEEEcCceeeeeEeeccccccCCCCceEEEEEecCcccccCCCce
Q 006934 396 ----------IIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLV 465 (625)
Q Consensus 396 ----------~~~~~~v~it~Gf~~~e~~~~~~Gi~vY~nnRLI~~~~kvg~q~~~~~~grGViGVve~~~l~~~~~~~~ 465 (625)
+......+...||.... ...|..+|+-+|. +..++.+..+.||++..+||..
T Consensus 207 ~m~l~~~~k~e~~~tv~q~~~gfktst---~rlGa~~i~~~R~---------~~~~~~kstqsiglls~tfL~~------ 268 (775)
T KOG1845|consen 207 CMSLGYSSKKEANSTVGQYGNGFKTST---MRLGADAIVFSRC---------ESRRGLKSTQSIGLLSYTFLRK------ 268 (775)
T ss_pred HHHhhhhhhhhhhhhhhhhccccccch---hhhccceeEeehh---------hhhccCCcceeEEEEEEeeecc------
Confidence 11112334455665432 2378888888887 2334567889999999998754
Q ss_pred eeccCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccccc--CCCCCCCCCceecCcchhhhhccCCCCCCCCCCCCcc
Q 006934 466 WVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVK--DGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWF 543 (625)
Q Consensus 466 ~pthnKQdFe~t~~y~~L~~~L~e~l~eYw~~~~~~~~~~~--~~~~~~~~~~WvQCd~C~KWR~lp~~~~~~~~p~~W~ 543 (625)
|+ |+||...- +|++...+...++|.. +-|.+ +.....+.... ..|+||+..+...+ .++.+|+
T Consensus 269 --t~-~~d~iv~~---~~i~~~~e~~~~~~~~----i~~~s~~~~~~n~~i~~~---~~~L~w~p~~~~~~--~l~q~~v 333 (775)
T KOG1845|consen 269 --TG-KRDFIVPM---RLIKMDYEKSDQLWQG----ILYKSGVDWAVNLEIEVT---ERFLKWSPYSHLLD--LLGQNSV 333 (775)
T ss_pred --cc-CCceeEec---chhhhhhhcccccccc----eeeccccccceeeeeHHH---HHHhhcCccccHHH--Hhhhhhh
Confidence 78 99999877 8888888999999965 22221 11111111111 17999999999876 5889999
Q ss_pred ccCCCC--CCCCCCCccccccccc
Q 006934 544 CYMKPF--EGLCDLPEQKVDAGVV 565 (625)
Q Consensus 544 C~~n~~--~~~C~~pEe~~~~~~~ 565 (625)
|..++. +..|.++..+....++
T Consensus 334 ~~~~~~~ef~~~~~~~~~~g~~~I 357 (775)
T KOG1845|consen 334 QYSKDFPEFGHQFNIMNKPGTDVI 357 (775)
T ss_pred hhccccchhcchhhhccCCCceee
Confidence 999985 6899999988887766
No 9
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.4e-21 Score=202.20 Aligned_cols=178 Identities=24% Similarity=0.380 Sum_probs=139.7
Q ss_pred CCCCcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEece
Q 006934 90 SRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIY 153 (625)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~A----------------t~v~I~i~~~~ 153 (625)
....+.+||++-.-.|+.+ |++|+.... +| ++|||+||.||.. ..++|.|..
T Consensus 70 ~kaeKf~FQaEVnRmMklI------INSLY~NKe--IF--LRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~-- 137 (785)
T KOG0020|consen 70 SKAEKFEFQAEVNRMMKLI------INSLYRNKE--IF--LRELISNASDALDKIRLLALTDKDVLGETEELEIKIKA-- 137 (785)
T ss_pred HHhhhhhHHHHHHHHHHHH------HHHHhhhhH--HH--HHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEee--
Confidence 3567788888887777777 888877753 88 9999999999942 356777764
Q ss_pred eccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCC--------CCCC-----CCCcccccCceeeeeccccCCeEEEEE
Q 006934 154 FKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQ--------PDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLT 219 (625)
Q Consensus 154 ~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~--------k~~~-----~~~~IG~fGvGfKsA~~~lg~~v~V~S 219 (625)
+..+..|.|.|.|+||++++|.++++ +..|. .... ....|||||||||+|++ ++++|.|+|
T Consensus 138 ----Dke~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVts 212 (785)
T KOG0020|consen 138 ----DKEKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTS 212 (785)
T ss_pred ----chhhCeeeEecccCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEe
Confidence 56688999999999999999999886 22221 1111 14789999999999999 999999999
Q ss_pred EeCCCCceeEEEEEecCCCccEEEeCcccC---CCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhHHHHh
Q 006934 220 QTADSRSIAFLSQSLNQGKDNLEIPIVSYY---RKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKA 289 (625)
Q Consensus 220 k~~~~~s~~~ls~sf~~g~~~i~Vp~~~~~---~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I~e~~ 289 (625)
|+++. ..++|.+ ....+.|....|. ++||.|.++++++. +++.+..++. |.+||.|+++||..+.
T Consensus 213 KhNdD--~QyiWES---dan~FsvseDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWs 282 (785)
T KOG0020|consen 213 KHNDD--SQYIWES---DANSFSVSEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWS 282 (785)
T ss_pred ccCCc--cceeeec---cCcceeeecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeee
Confidence 99875 3577766 2336777766554 58999999999876 7888888887 9999999999987653
No 10
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.69 E-value=6.3e-18 Score=158.10 Aligned_cols=97 Identities=34% Similarity=0.511 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCC-CCCCcccccCcee
Q 006934 126 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA-DDPNRIGRFGVGF 204 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~-~~~~~IG~fGvGf 204 (625)
+..||+|||+||+||.|+.|.|.|... ..+...|.|.|||.||+.++|..++.+|.+.+.. .....+|+||+|+
T Consensus 3 ~~~al~ElI~Ns~DA~a~~I~I~i~~~-----~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 3 PEDALRELIDNSIDAGATNIKISIDED-----KKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGL 77 (137)
T ss_dssp CTHHHHHHHHHHHHHHHHHEEEEEEEE-----TTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGC
T ss_pred HHHHHHHHHHHHHHccCCEEEEEEEcC-----CCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEH
Confidence 368999999999999999999999852 2457899999999999999999988898887641 2367899999999
Q ss_pred eeeccccCCeEEEEEEeCCCCce
Q 006934 205 KTGAMRLGKDALVLTQTADSRSI 227 (625)
Q Consensus 205 KsA~~~lg~~v~V~Sk~~~~~s~ 227 (625)
|.|++.+|+.+.|+|++.+....
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~~~ 100 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGESFT 100 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSSSE
T ss_pred HHHHHHhcCEEEEEEEECCCCcE
Confidence 89999999999999999987543
No 11
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=99.59 E-value=1.8e-16 Score=123.63 Aligned_cols=45 Identities=44% Similarity=1.005 Sum_probs=31.1
Q ss_pred CceecCcchhhhhccCCCCCC--CCCCCCccccCCCC--CCCCCCCccc
Q 006934 515 QEWVQCNKCRKWRMLDPGFDT--KSLPVEWFCYMKPF--EGLCDLPEQK 559 (625)
Q Consensus 515 ~~WvQCd~C~KWR~lp~~~~~--~~~p~~W~C~~n~~--~~~C~~pEe~ 559 (625)
+.|||||.|+|||+||.+++. ..+|+.|+|+||++ +++|++|||.
T Consensus 1 ~~WVQCd~C~KWR~lp~~~~~~~~~~~d~W~C~~n~~~~~~sC~~pee~ 49 (50)
T PF07496_consen 1 DYWVQCDSCLKWRRLPEEVDPIREELPDPWYCSMNPDPPFNSCDAPEEI 49 (50)
T ss_dssp -EEEE-TTT--EEEE-CCHHCTSCCSSTT--GGGSS-CCC-STTS--SS
T ss_pred CeEEECCCCCceeeCChhhCcccccCCCeEEcCCCCCCCCCCCCCcccC
Confidence 379999999999999999876 78999999999997 5999999985
No 12
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.51 E-value=3e-13 Score=155.23 Aligned_cols=108 Identities=22% Similarity=0.390 Sum_probs=86.7
Q ss_pred eeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-c
Q 006934 107 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 184 (625)
Q Consensus 107 ~v~v~p~~L~sl-s~~~~~~~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-f 184 (625)
|..+++..++.+ |...+..|.+|++|||+||+||||++|+|.++ .+|...|.|.|||+||+++||.-++. +
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve-------~gG~~~I~V~DNG~Gi~~~Dl~la~~rH 76 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVE-------GGGLKLIRVRDNGSGIDKEDLPLALLRH 76 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEc-------cCCccEEEEEECCCCCCHHHHHHHHhhh
Confidence 788999999999 45667899999999999999999999999998 57788999999999999999988754 4
Q ss_pred ccCC-CCCCCCCcccccCceeee---eccccCCeEEEEEEeCC
Q 006934 185 GHKQ-PDADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTAD 223 (625)
Q Consensus 185 G~s~-k~~~~~~~IG~fGvGfKs---A~~~lg~~v~V~Sk~~~ 223 (625)
.+|. ....|...|-.| ||.. ++++-..+++|.||+.+
T Consensus 77 aTSKI~~~~DL~~I~Tl--GFRGEAL~SIasVsrlti~Srt~~ 117 (638)
T COG0323 77 ATSKIASLEDLFRIRTL--GFRGEALASIASVSRLTITSRTAE 117 (638)
T ss_pred ccccCCchhHHHHhhcc--CccHHHHHHHHhhheeEEEeecCC
Confidence 4442 223344556655 8874 44555689999999654
No 13
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.42 E-value=1.3e-11 Score=141.73 Aligned_cols=141 Identities=20% Similarity=0.253 Sum_probs=98.8
Q ss_pred ceeeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh
Q 006934 105 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 183 (625)
Q Consensus 105 ~~~v~v~p~~L~sl-s~~~~~~~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~ 183 (625)
|.|..+++..++.+ |...+..|..+|+|||+||+||||+.|.|.+. .++...|+|.|||.||+.+++..++.
T Consensus 1 ~~I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~-------~~g~~~i~V~DnG~Gi~~~~~~~~~~ 73 (617)
T PRK00095 1 MPIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIE-------EGGLKLIRVRDNGCGISKEDLALALA 73 (617)
T ss_pred CCceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEE-------eCCeEEEEEEEcCCCCCHHHHHHHhh
Confidence 45778999999999 45667899999999999999999999999996 34567899999999999999998876
Q ss_pred cccCCCCCC--C---CCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeCcccCCCCcEEEEE
Q 006934 184 FGHKQPDAD--D---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 258 (625)
Q Consensus 184 fG~s~k~~~--~---~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~~~~~~~Gt~i~l~ 258 (625)
...+.|-.. + ....|..|.|+.+.+ .++ +++|.||+.+.. .++ ...|..|.- +.+.. .-...||.|++.
T Consensus 74 ~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~-~vs-~l~i~s~~~~~~-~~~-~~~~~~G~~-~~~~~-~~~~~GT~V~v~ 147 (617)
T PRK00095 74 RHATSKIASLDDLEAIRTLGFRGEALPSIA-SVS-RLTLTSRTADAA-EGW-QIVYEGGEI-VEVKP-AAHPVGTTIEVR 147 (617)
T ss_pred ccCCCCCCChhHhhccccCCcchhHHHhhh-hce-EEEEEEecCCCC-ceE-EEEecCCcC-cceec-ccCCCCCEEEec
Confidence 444444211 2 245677777774333 344 899999997642 233 223444421 11111 112479998874
No 14
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=4e-12 Score=134.62 Aligned_cols=141 Identities=19% Similarity=0.256 Sum_probs=98.1
Q ss_pred ceeeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh
Q 006934 105 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 183 (625)
Q Consensus 105 ~~~v~v~p~~L~sl-s~~~~~~~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~ 183 (625)
|-+.++++..++.+ |...+.++..||.|||+||+||+|+.|.|.+.. .+...|.|.|||.||+.+++..++.
T Consensus 1 ~~I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~ 73 (312)
T TIGR00585 1 MTIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEE-------GGLKLIEVSDNGSGIDKEDLPLACE 73 (312)
T ss_pred CcCeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCEEEEEEEecCCCCCHHHHHHHhh
Confidence 35778999999999 445567899999999999999999999888863 2344699999999999999998765
Q ss_pred cccCCCCC-----CCCCcccccCceeeeeccccCCeEEEEEEe-CCCCceeEEEEEecCCCccEEEeCcccCCCCcEEEE
Q 006934 184 FGHKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQT-ADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 257 (625)
Q Consensus 184 fG~s~k~~-----~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~-~~~~s~~~ls~sf~~g~~~i~Vp~~~~~~~Gt~i~l 257 (625)
.+.+.|.. ......|..|.|+.+ ...++ +++|.||+ .+. ..++.+. . +|. .+.-....-...||.|.+
T Consensus 74 ~~~tsk~~~~~~~~~~~~~G~rG~al~s-i~~~s-~~~i~S~~~~~~-~~~~~~~-~-~g~-~~~~~~~~~~~~GTtV~v 147 (312)
T TIGR00585 74 RHATSKIQSFEDLERIETLGFRGEALAS-ISSVS-RLTITTKTSAAD-GLAWQAL-L-EGG-MIEEIKPAPRPVGTTVEV 147 (312)
T ss_pred CCCcCCCCChhHhhcccccCccchHHHH-HHhhC-cEEEEEeecCCC-cceEEEE-E-CCC-cCcccccccCCCccEEEE
Confidence 33333321 224578999999843 33355 89999998 333 3444443 2 332 111111122357999887
Q ss_pred E
Q 006934 258 D 258 (625)
Q Consensus 258 ~ 258 (625)
.
T Consensus 148 ~ 148 (312)
T TIGR00585 148 R 148 (312)
T ss_pred c
Confidence 4
No 15
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.14 E-value=1.3e-10 Score=125.17 Aligned_cols=146 Identities=21% Similarity=0.251 Sum_probs=106.1
Q ss_pred HHHHHh----h-cccccCHHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhh
Q 006934 113 SYLQTL----G-QAHSGWIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 182 (625)
Q Consensus 113 ~~L~sl----s-~~~~~~~f~AIaELIdNA~DA~A-----t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l 182 (625)
.|..+| + +..+.++.++|+|||+||+||.. +.|.|.|..+ +.+...+.|+|||.||+.+.+.+.|
T Consensus 19 EFF~kNk~mlGf~~p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-----~~d~y~v~veDNGpGIP~e~IPkvF 93 (538)
T COG1389 19 EFFRKNKEMLGFDGPIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-----GKDHYKVIVEDNGPGIPEEQIPKVF 93 (538)
T ss_pred HHHHhCHHhcCCCCchhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec-----CCceEEEEEecCCCCCChhHhHHHH
Confidence 555555 1 34456688999999999999943 6788888753 4667889999999999999999988
Q ss_pred h-cccCCCCCCCCCcccccCceeeee----ccccCCeEEEEEEeCCCCceeEEEEEec-CCCccEEEeCcccC----CCC
Q 006934 183 Y-FGHKQPDADDPNRIGRFGVGFKTG----AMRLGKDALVLTQTADSRSIAFLSQSLN-QGKDNLEIPIVSYY----RKG 252 (625)
Q Consensus 183 ~-fG~s~k~~~~~~~IG~fGvGfKsA----~~~lg~~v~V~Sk~~~~~s~~~ls~sf~-~g~~~i~Vp~~~~~----~~G 252 (625)
+ +-++++-....++.||+|+|.+.| -|..|+.+.|+|.+.++..+..++-... ..++..++....+. -+|
T Consensus 94 Gk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hG 173 (538)
T COG1389 94 GKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHG 173 (538)
T ss_pred HHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCc
Confidence 5 333333223467889999999754 3678999999999998766666665443 33445555543332 379
Q ss_pred cEEEEEeccch
Q 006934 253 QFMELDTVVQS 263 (625)
Q Consensus 253 t~i~l~~~~~~ 263 (625)
|.|+++++..+
T Consensus 174 T~Vel~~~~~~ 184 (538)
T COG1389 174 TRVELELKGVW 184 (538)
T ss_pred eEEEEEecccc
Confidence 99999987653
No 16
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.98 E-value=1.9e-09 Score=124.08 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=115.7
Q ss_pred CCCceeeecCH-HHHHHhhcccccCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 102 PLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 102 ~~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~DA----~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
..++++|+..| +|+-+.. ...+...+.||||||+|+ .|+.|.|.|.. ...|+|.|||.||+.+
T Consensus 16 L~~lE~VrkRP~mYiGs~~---~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~---------dg~I~V~DnGrGIP~~ 83 (631)
T PRK05559 16 LEGLEPVRKRPGMYIGSTD---TRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA---------DGSVSVRDNGRGIPVG 83 (631)
T ss_pred ccchHHHhcCCCceeCCCC---CchhhhhhhhhhccccchhhcCCCCEEEEEEeC---------CCcEEEEEcCCCCCcc
Confidence 35678888888 7876543 245788899999999998 78999999873 2489999999999998
Q ss_pred hHhh--------hhh-cccCCCC--CCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeC
Q 006934 177 DVVR--------MTY-FGHKQPD--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 245 (625)
Q Consensus 177 el~~--------~l~-fG~s~k~--~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~ 245 (625)
.... +|. +..+.|- .......|..|+|.+++. .++..++|.|++++.. +.+.|..|...-.++.
T Consensus 84 ~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vN-alS~~l~V~s~r~g~~----~~~~f~~G~~~~~l~~ 158 (631)
T PRK05559 84 IHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVN-ALSSRLEVEVKRDGKV----YRQRFEGGDPVGPLEV 158 (631)
T ss_pred cccccCCcchheeeeeccccCccCCccccccCcccccchhhhh-hheeeEEEEEEeCCeE----EEEEEECCcCccCccc
Confidence 8776 443 1222221 112467899999995554 4999999999987642 4555644422111111
Q ss_pred c-cc--CCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 006934 246 V-SY--YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 307 (625)
Q Consensus 246 ~-~~--~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 307 (625)
. .. ..+||.|++.+... |++-..|....|.+.+..+.....|..|.+.+-+
T Consensus 159 ~~~~~~~~~GT~V~f~PD~~-----------iF~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~~ 212 (631)
T PRK05559 159 VGTAGKRKTGTRVRFWPDPK-----------IFDSPKFSPERLKERLRSKAFLLPGLTITLNDER 212 (631)
T ss_pred cccccCCCCCcEEEEEECHH-----------HcCCcccCHHHHHHHHHHHHhhCCCeEEEEEeCC
Confidence 1 11 45799999865321 1111223333344555555545689999887654
No 17
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.96 E-value=1.6e-09 Score=119.49 Aligned_cols=140 Identities=21% Similarity=0.355 Sum_probs=105.2
Q ss_pred eeeecCHHHHHHhh-cccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhh-hhh
Q 006934 106 NFVRADPSYLQTLG-QAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR-MTY 183 (625)
Q Consensus 106 ~~v~v~p~~L~sls-~~~~~~~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~-~l~ 183 (625)
.|-+++..++++++ ...+..|..||.|||.||+||++|.|.|.+. ++|-..|.|.|||.||.++||.- |-+
T Consensus 7 ~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk-------~GGLKLlQisDnG~GI~reDl~ilCeR 79 (694)
T KOG1979|consen 7 KIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVK-------DGGLKLLQISDNGSGIRREDLPILCER 79 (694)
T ss_pred hhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEe-------cCCeEEEEEecCCCccchhhhHHHHHH
Confidence 57889999999994 4667889999999999999999999999887 57888999999999999999976 456
Q ss_pred cccCCC-CCCCCCcccccCceee---eeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeCcccCCCCcEEEE
Q 006934 184 FGHKQP-DADDPNRIGRFGVGFK---TGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 257 (625)
Q Consensus 184 fG~s~k-~~~~~~~IG~fGvGfK---sA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~~~~~~~Gt~i~l 257 (625)
|.+|.- ...+...|..| ||. .|+++-..+|+|.||..+..+. | -.+|.+|.-. .-|.+.--.+||.|.+
T Consensus 80 ftTSKL~kFEDL~~lsTy--GFRGEALASiShVA~VtV~TK~~~~~ca-y-rasY~DGkm~-~~pKpcAgk~GT~I~v 152 (694)
T KOG1979|consen 80 FTTSKLTKFEDLFSLSTY--GFRGEALASISHVAHVTVTTKTAEGKCA-Y-RASYRDGKMI-ATPKPCAGKQGTIITV 152 (694)
T ss_pred hhhhhcchhHHHHhhhhc--CccHHHHhhhhheeEEEEEEeecCceee-e-EEEeeccccc-cCCCCccCCCceEEEe
Confidence 777642 23456677777 676 4677788999999999887433 2 2233333211 1233444457888875
No 18
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.95 E-value=1.8e-09 Score=124.06 Aligned_cols=175 Identities=18% Similarity=0.127 Sum_probs=114.2
Q ss_pred CCCceeeecCH-HHHHHhhcccccCHHHHHHHHHhcccc---c-CCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 102 PLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRD---A-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 102 ~~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~D---A-~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
..++..||..| +|+.+.+ +..+|.||||||+| | +|+.|.|.|.. ...|+|.|||.||+.+
T Consensus 12 L~gle~VRkRPgMYigs~~------~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~---------d~~I~V~DnGrGIp~~ 76 (625)
T TIGR01055 12 LDGLEPVRKRPGMYTDTTR------PNHLVQEVIDNSVDEALAGFASIIMVILHQ---------DQSIEVFDNGRGMPVD 76 (625)
T ss_pred ecccHHhhcCCCCeeCCCC------cceeehhhhhcccchhhcCCCCEEEEEEeC---------CCeEEEEecCCccCcc
Confidence 35778889998 8885543 34569999999999 8 69999999872 2789999999999998
Q ss_pred h--------Hhhhhh-cccCCCC--CCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeC
Q 006934 177 D--------VVRMTY-FGHKQPD--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 245 (625)
Q Consensus 177 e--------l~~~l~-fG~s~k~--~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~ 245 (625)
+ +.-+|. .-.+.|- .......|..|+|.++.. .|+..++|.|++++.. +.+.|..|.....++.
T Consensus 77 ~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vn-alS~~l~v~~~r~g~~----~~~~~~~G~~~~~~~~ 151 (625)
T TIGR01055 77 IHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVN-ALSKRVKIKVYRQGKL----YSIAFENGAKVTDLIS 151 (625)
T ss_pred cccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHH-HhcCeEEEEEEECCeE----EEEEEECCeEcccccc
Confidence 7 555552 2112221 112357899999995544 4999999999987752 5555644422111221
Q ss_pred c-cc--CCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 006934 246 V-SY--YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 307 (625)
Q Consensus 246 ~-~~--~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 307 (625)
. .. ...||.|.+.+..+ +++-..|....|.+.+..++....|..|.+.+.+
T Consensus 152 i~~~~~~~~GT~V~F~PD~~-----------~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~der 205 (625)
T TIGR01055 152 AGTCGKRLTGTSVHFTPDPE-----------IFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDEV 205 (625)
T ss_pred ccccCCCCCCeEEEEEECHH-----------HCCCCccCHHHHHHHHHHHHhhCCCcEEEEeecC
Confidence 1 12 34799998855321 2222233334455555555545789999888654
No 19
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.89 E-value=6.8e-09 Score=120.85 Aligned_cols=179 Identities=17% Similarity=0.193 Sum_probs=113.9
Q ss_pred CCCceeeecCH-HHHHHhhcccccCHHHHHHHHHhcccc---cC-CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 102 PLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 102 ~~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~D---A~-At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
-.++++||..| +||-+.... ..+...+.||||||+| |+ |+.|.|.|.. ...|+|.|||.||+.+
T Consensus 15 L~gle~VRkRPgMYIGst~~~--~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~---------dgsIsV~DnGrGIPvd 83 (756)
T PRK14939 15 LKGLDAVRKRPGMYIGDTDDG--TGLHHMVYEVVDNAIDEALAGHCDDITVTIHA---------DGSVSVSDNGRGIPTD 83 (756)
T ss_pred ecccHHHhcCCCCeeCCCCCC--cchhhhhhHhhcccccccccCCCCEEEEEEcC---------CCeEEEEEcCCcccCC
Confidence 35688899999 898765431 2356779999999999 88 8999999872 2489999999999987
Q ss_pred ----------hHhhh-hhcccCCCCCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEe-
Q 006934 177 ----------DVVRM-TYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP- 244 (625)
Q Consensus 177 ----------el~~~-l~fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp- 244 (625)
|+.-. +.-|.+.......-+-|..|+|.++. -.++..++|.|++++. .+.+.|..|...-.++
T Consensus 84 ~h~~~g~~~~Elvlt~lhAggKfd~~~ykvSgGlhGvG~svv-NAlS~~l~v~v~r~gk----~~~q~f~~G~~~~~l~~ 158 (756)
T PRK14939 84 IHPEEGVSAAEVIMTVLHAGGKFDQNSYKVSGGLHGVGVSVV-NALSEWLELTIRRDGK----IHEQEFEHGVPVAPLKV 158 (756)
T ss_pred cccccCCchhhheeeeecccCCCCCCcccccCCccCccceEe-ehccCeEEEEEEeCCe----EEEEEEecCccccCccc
Confidence 32211 11111111111234679999999554 4499999999998775 2556664443211111
Q ss_pred CcccCCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 006934 245 IVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 307 (625)
Q Consensus 245 ~~~~~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 307 (625)
.......||.|.+.+... |++-..|....|.+.+..+.....|..|.+.+.+
T Consensus 159 ~g~~~~~GT~V~F~PD~~-----------iF~~~~~~~~~i~~rl~elA~lnpgl~i~l~der 210 (756)
T PRK14939 159 VGETDKTGTEVRFWPSPE-----------IFENTEFDYDILAKRLRELAFLNSGVRIRLKDER 210 (756)
T ss_pred cCCcCCCCcEEEEEECHH-----------HcCCcccCHHHHHHHHHHHhhcCCCCEEEEeccC
Confidence 111245799998865322 2222223333445555555555789999888764
No 20
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.82 E-value=1.3e-08 Score=117.36 Aligned_cols=178 Identities=17% Similarity=0.158 Sum_probs=110.7
Q ss_pred CCCceeeecCH-HHHHHhhcccccCHHHHHHHHHhcccc---cC-CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 102 PLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 102 ~~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~D---A~-At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
..++++|+..| +|+-+... ..+...+.|||+||+| |+ |+.|.|.|.. ...|+|.|||.||+.+
T Consensus 16 L~~lE~Vr~RPgMYiGs~~~---~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~ 83 (638)
T PRK05644 16 LEGLEAVRKRPGMYIGSTGE---RGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---------DGSITVTDNGRGIPVD 83 (638)
T ss_pred ecchHHHhcCCCceECCCCh---hhHHhhhHHhhhcccccccCCCCCEEEEEEeC---------CCcEEEEEeCccccCC
Confidence 35678888888 88865432 2356679999999999 88 9999999872 2389999999999986
Q ss_pred hHhh--------hhhcc-cCCCC--CCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeC
Q 006934 177 DVVR--------MTYFG-HKQPD--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 245 (625)
Q Consensus 177 el~~--------~l~fG-~s~k~--~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~ 245 (625)
.-.. .|..- .+.+- .......|..|+|.++... ++..++|.|++++. .+.+.|..|...-.++.
T Consensus 84 ~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vna-lS~~~~v~t~r~g~----~~~~~~~~G~~~~~~~~ 158 (638)
T PRK05644 84 IHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNA-LSTWLEVEVKRDGK----IYYQEYERGVPVTPLEV 158 (638)
T ss_pred ccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhhh-eeceEEEEEEeCCc----EEEEEEECCeEccCccc
Confidence 3221 22211 11121 1123478999999965544 99999999998765 23455544421111111
Q ss_pred -cccCCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 006934 246 -VSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 307 (625)
Q Consensus 246 -~~~~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 307 (625)
......||.|.+.+... +++-..|....|.+.+..++....|..|.+.+.+
T Consensus 159 ~~~~~~~GT~I~F~Pd~~-----------~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er 210 (638)
T PRK05644 159 IGETDETGTTVTFKPDPE-----------IFETTEFDYDTLATRLRELAFLNKGLKITLTDER 210 (638)
T ss_pred cCCcCCCCcEEEEEECHH-----------HcCCcccCHHHHHHHHHHHHhhCCCcEEEEEecc
Confidence 11235799999754321 1221223333344555555545689999988764
No 21
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.79 E-value=1.7e-08 Score=116.90 Aligned_cols=176 Identities=18% Similarity=0.153 Sum_probs=110.9
Q ss_pred CCceeeecCH-HHHHHhhcccccCHHHHHHHHHhcccc---cC-CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhh
Q 006934 103 LEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 177 (625)
Q Consensus 103 ~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~D---A~-At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~ee 177 (625)
.++++|+..| +|+-+... ..+...+.|||+||+| |+ |+.|.|.|.. ...|+|.|||.||+.+-
T Consensus 10 ~~lE~vr~RP~mYiGs~~~---~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~ 77 (654)
T TIGR01059 10 EGLEAVRKRPGMYIGSTGE---TGLHHLVYEVVDNSIDEAMAGYCDTINVTIND---------DGSVTVEDNGRGIPVDI 77 (654)
T ss_pred cchHHHhcCCCceeCCCCc---chHHhhhHHhhhccccccccCCCCEEEEEEeC---------CCcEEEEEeCCCcCccc
Confidence 4677888888 77865532 2356779999999999 88 9999999872 23599999999999862
Q ss_pred Hh--------hhhhc-ccCCC--CCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccE--EEe
Q 006934 178 VV--------RMTYF-GHKQP--DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL--EIP 244 (625)
Q Consensus 178 l~--------~~l~f-G~s~k--~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i--~Vp 244 (625)
-. ..+.. ..+.+ ........|..|+|+++.. .++..++|.|++++.. +.+.|..|...- .+.
T Consensus 78 h~~~ki~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~in-alS~~l~v~~~~~g~~----~~~~~~~G~~~~~l~~~ 152 (654)
T TIGR01059 78 HPEEGISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVN-ALSEWLEVTVFRDGKI----YRQEFERGIPLGPLEVV 152 (654)
T ss_pred cCcCCCCchHHheeeecccCccCCCcceecCCccchhHHHHH-HhcCeEEEEEEECCeE----EEEEEeCCCcccCceec
Confidence 11 11221 11112 1122457899999995554 4999999999987652 445554442211 111
Q ss_pred CcccCCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 006934 245 IVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 307 (625)
Q Consensus 245 ~~~~~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 307 (625)
..-...||.|.+...+. ++.-..|....|.+.+..++....|..|.+++-+
T Consensus 153 -~~~~~~GT~V~F~pdp~-----------~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er 203 (654)
T TIGR01059 153 -GETKKTGTTVRFWPDPE-----------IFETTEFDFDILAKRLRELAFLNSGVKISLEDER 203 (654)
T ss_pred -cCCCCCCcEEEEEEChH-----------HhCCcccCHHHHHHHHHHhhccCCCeEEEEEeec
Confidence 12235799999765433 1111122233445555555555789999888754
No 22
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.78 E-value=1.4e-08 Score=114.34 Aligned_cols=138 Identities=16% Similarity=0.205 Sum_probs=89.0
Q ss_pred eecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhh-hhcc
Q 006934 108 VRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM-TYFG 185 (625)
Q Consensus 108 v~v~p~~L~sl-s~~~~~~~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~-l~fG 185 (625)
.++++...|.+ +.+.+.++..|++|||+||+||||+.|+|.++ +.|-..|.|.|||+|++..++.-+ +...
T Consensus 2 k~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~k-------dyG~d~IEV~DNG~GI~~~n~~~l~lkh~ 74 (672)
T KOG1978|consen 2 KQIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVK-------DYGSDSIEVSDNGSGISATDFEGLALKHT 74 (672)
T ss_pred CCCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecC-------CCCcceEEEecCCCCCCccchhhhhhhhh
Confidence 35778888999 55556789999999999999999999999987 457889999999999999988763 3222
Q ss_pred cCC-CCCCCCCcccccCceeee---eccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeCcccCCCCcEEEE
Q 006934 186 HKQ-PDADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 257 (625)
Q Consensus 186 ~s~-k~~~~~~~IG~fGvGfKs---A~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~~~~~~~Gt~i~l 257 (625)
.|. ....| ...-+-.||.. ++++--.+++|+|++... -+|-.+.- +..+.+.--...-...||+|.+
T Consensus 75 TSKi~~f~D--l~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~-~vgt~l~~--Dh~G~I~~k~~~ar~~GTTV~v 145 (672)
T KOG1978|consen 75 TSKIVSFAD--LAVLFTLGFRGEALSSLCALGDVMISTRSHSA-KVGTRLVY--DHDGHIIQKKPVARGRGTTVMV 145 (672)
T ss_pred hhcccchhh--hhhhhhhhhHHHHHHhhhhccceEEEEeeccC-ccceeEEE--ccCCceeeeccccCCCCCEEEH
Confidence 221 11122 23334447764 233344788999988732 23333321 1222332111122346888764
No 23
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.77 E-value=5.6e-08 Score=109.34 Aligned_cols=96 Identities=25% Similarity=0.405 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCCCCCCCCcccc
Q 006934 126 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 199 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At-----~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~ 199 (625)
+..+|.|||+||+||.++ .|.|.+... ..+.+...|.|.|||.||+++++..+|. |.++.+........|+
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~---~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~ 113 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRV---DEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQ 113 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEc---cCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCC
Confidence 678899999999999764 466666521 0023346799999999999999999874 4343332111356799
Q ss_pred cCceeeeecc----ccCCeEEEEEEeCCC
Q 006934 200 FGVGFKTGAM----RLGKDALVLTQTADS 224 (625)
Q Consensus 200 fGvGfKsA~~----~lg~~v~V~Sk~~~~ 224 (625)
+|+|+.++.+ ..|..+.|.|+..+.
T Consensus 114 ~GLGLsiv~~isq~~~G~~I~V~S~~~~g 142 (535)
T PRK04184 114 QGIGISAAVLYAQMTTGKPVRVISSTGGS 142 (535)
T ss_pred CCcchHHHHHHHHHhcCCcEEEEEecCCC
Confidence 9999976532 235678999987654
No 24
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.76 E-value=7.5e-08 Score=110.86 Aligned_cols=94 Identities=24% Similarity=0.315 Sum_probs=68.5
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCCCCCCCCccc
Q 006934 125 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 198 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA~At-----~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG 198 (625)
++..+|.|||+||+||.+. .|.|.+.. .+..-.|.|.|||.||+++++..+|. |.++.+-.......|
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG 119 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEE------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRG 119 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEE------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCC
Confidence 4678999999999999765 46666652 23335799999999999999999885 554443212235578
Q ss_pred ccCceeeeecc----ccCCeEEEEEEeCCC
Q 006934 199 RFGVGFKTGAM----RLGKDALVLTQTADS 224 (625)
Q Consensus 199 ~fGvGfKsA~~----~lg~~v~V~Sk~~~~ 224 (625)
+.|+|+.++.. .-|..+.|.|+..+.
T Consensus 120 ~rG~GLglai~~sqlt~GgpI~I~S~~~~~ 149 (795)
T PRK14868 120 QQGIGISAAVLYSQLTSGKPAKITSRTQGS 149 (795)
T ss_pred CCceehHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 99999965442 347779999987654
No 25
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.74 E-value=1e-07 Score=106.13 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=69.8
Q ss_pred cCHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCCCCCCCCcc
Q 006934 124 GWIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRI 197 (625)
Q Consensus 124 ~~~f~AIaELIdNA~DA~At-----~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~I 197 (625)
..+..++.|||+||+||.++ .|.|.+... ..+...|+|.|||.||+++++..+|. |.++.+........
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-----g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~ 101 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-----GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSR 101 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccC
Confidence 45678999999999999865 566666521 11234799999999999999999875 44444432234567
Q ss_pred cccCceeeeecc----ccCCeEEEEEEeCCCC
Q 006934 198 GRFGVGFKTGAM----RLGKDALVLTQTADSR 225 (625)
Q Consensus 198 G~fGvGfKsA~~----~lg~~v~V~Sk~~~~~ 225 (625)
|.+|+|+.++.+ ..|..+.|.|+..+..
T Consensus 102 G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~ 133 (488)
T TIGR01052 102 GQQGIGISGAVLYSQMTTGKPVKVISSTGGEI 133 (488)
T ss_pred CCccEehhHHHHHHHHcCCceEEEEEecCCce
Confidence 999999965432 3456699999987653
No 26
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=98.62 E-value=6.5e-08 Score=108.76 Aligned_cols=180 Identities=19% Similarity=0.196 Sum_probs=121.2
Q ss_pred CCCceeeecCH-HHHHHhhcccccCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 102 PLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 102 ~~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~DA----~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
-.+++.||..| +||-+.... ..+...+.|.||||+|. .++.|.|.|.. ...|+|.|||.||+-+
T Consensus 14 L~GLEaVRkRPGMYIGst~~~--~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~---------d~sisV~DnGRGIPvd 82 (635)
T COG0187 14 LEGLEAVRKRPGMYIGSTGDG--RGLHHLVWEVVDNSIDEALAGYADRIDVTLHE---------DGSISVEDNGRGIPVD 82 (635)
T ss_pred ccCcHHhhcCCCceeccCCCC--CcceeeEeEeeechHhHHhhCcCcEEEEEEcC---------CCeEEEEECCCCCccc
Confidence 46788999999 999877442 23455589999999997 47888888863 5789999999999976
Q ss_pred hH--------hhhhhc---ccCCCCCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCc--cEE-
Q 006934 177 DV--------VRMTYF---GHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE- 242 (625)
Q Consensus 177 el--------~~~l~f---G~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~--~i~- 242 (625)
-= +-+|.. |.+.....-.-+=|..|||. ++.-.|+..+.|.+++++. .+.+.|..|.. .+.
T Consensus 83 iH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~-SVVNALS~~l~v~v~r~gk----~y~q~f~~G~~~~~l~~ 157 (635)
T COG0187 83 IHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGV-SVVNALSTWLEVEVKRDGK----IYRQRFERGVPVTPLEV 157 (635)
T ss_pred cCCCCCCCceEEEEEeeccCcccCCCccEeecCCCccce-EEEecccceEEEEEEECCE----EEEEEEeCCCcCCCcee
Confidence 52 222321 22211111234558899999 5556699999999999875 55667755432 222
Q ss_pred EeCcccCCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcccc
Q 006934 243 IPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 308 (625)
Q Consensus 243 Vp~~~~~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r 308 (625)
+-.......||+|.+.++++ |+.-..|....|...++.+.....|..|.+.+-+.
T Consensus 158 ig~~~~~~~GT~V~F~PD~~-----------iF~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~ 212 (635)
T COG0187 158 IGSTDTKKTGTKVRFKPDPE-----------IFGETEFDYEILKRRLRELAFLNKGVKITLTDERT 212 (635)
T ss_pred cccCCCCCCccEEEEEcChH-----------hcCCcccCHHHHHHHHHHHhccCCCCEEEEEeccC
Confidence 11123445799998877544 33234566555666666666678999999987754
No 27
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.59 E-value=1.7e-07 Score=107.60 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=94.8
Q ss_pred HHHHHhcccccC----CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhh--------hhhcc-cCCC--CCCCC
Q 006934 130 IAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTYFG-HKQP--DADDP 194 (625)
Q Consensus 130 IaELIdNA~DA~----At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~--------~l~fG-~s~k--~~~~~ 194 (625)
+.|||+||+||+ |+.|.|.|.. . ..|+|.|||.||+.+.... .+... .+.+ .....
T Consensus 6 v~ElvdNAiD~~~~g~at~I~V~i~~-------~--g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k 76 (594)
T smart00433 6 VDEIVDNAADEALAGYMDTIKVTIDK-------D--NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYK 76 (594)
T ss_pred EeeehhcccchhccCCCCEEEEEEeC-------C--CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCcc
Confidence 789999999997 9999999873 2 3899999999999754321 12111 1112 11224
Q ss_pred CcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecC-CC--ccEEEeCcccCCCCcEEEEEeccchhhhhhhhh
Q 006934 195 NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ-GK--DNLEIPIVSYYRKGQFMELDTVVQSEATAKYNL 271 (625)
Q Consensus 195 ~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~-g~--~~i~Vp~~~~~~~Gt~i~l~~~~~~e~~~~~~l 271 (625)
...|..|+|.++. ..++..++|.|+..+.. +.+.|.. |. ....+. ..-...||.|++.+...
T Consensus 77 ~s~G~~G~Gls~v-nalS~~l~v~~~~~g~~----~~~~~~~~G~~~~~~~~~-~~~~~~GT~V~F~Pd~~--------- 141 (594)
T smart00433 77 VSGGLHGVGASVV-NALSTEFEVEVARDGKE----YKQSFSNNGKPLSEPKII-GDTKKDGTKVTFKPDLE--------- 141 (594)
T ss_pred ccCCcccchHHHH-HHhcCceEEEEEeCCcE----EEEEEeCCCeECccceec-CCCCCCCcEEEEEECHH---------
Confidence 5789999999544 44999999999998652 4455533 32 111111 11235799998754321
Q ss_pred hhhcccC-CCchhhHHHHhhhcccCCCCcEEEEEccc
Q 006934 272 KSIKEFS-PFNKYLIGEKAGLFQDKCTGTQIYIWNLD 307 (625)
Q Consensus 272 ~~I~kyS-pF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 307 (625)
+..-+ .|....|.+.+..++....|..|.+.+.+
T Consensus 142 --~F~~~~~~~~~~i~~rl~~~A~l~pgl~i~l~der 176 (594)
T smart00433 142 --IFGMTTDDDFELLKRRLRELAFLNKGVKITLNDER 176 (594)
T ss_pred --HhCCcccchHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence 11111 33334455555555555789999888764
No 28
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=98.59 E-value=1.2e-07 Score=109.20 Aligned_cols=175 Identities=19% Similarity=0.191 Sum_probs=110.1
Q ss_pred CCceeeecCH-HHHHHhhcccccCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhh
Q 006934 103 LEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 177 (625)
Q Consensus 103 ~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~DA----~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~ee 177 (625)
.++++||..| +|+-+... ..+...+.|+||||+|. .++.|.|.|.. ...++|.|||.||+.+-
T Consensus 14 ~glE~VRkRPgMYIGst~~---~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~---------dgsitV~DnGrGIPv~~ 81 (637)
T TIGR01058 14 EGLDAVRKRPGMYIGSTDS---KGLHHLVWEIVDNSVDEVLAGYADNITVTLHK---------DNSITVQDDGRGIPTGI 81 (637)
T ss_pred cccHHHhcCCCCeECCCCc---chhheehhhhhcchhhhhhcCCCcEEEEEEcC---------CCeEEEEECCCcccCcc
Confidence 4678888888 88876532 23455589999999994 57888888862 35899999999998642
Q ss_pred Hh-------h-hhhc---ccCCCCCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCC-C--ccEEE
Q 006934 178 VV-------R-MTYF---GHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-K--DNLEI 243 (625)
Q Consensus 178 l~-------~-~l~f---G~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g-~--~~i~V 243 (625)
-. . .|.. |.+.......-+-|..|+|.+.+ -.|+..++|.+++++. .+.++|..| . ..+.+
T Consensus 82 h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svv-NAlS~~~~V~v~r~gk----~~~q~f~~Gg~~~~~l~~ 156 (637)
T TIGR01058 82 HQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVV-NALSSWLEVTVKRDGQ----IYQQRFENGGKIVQSLKK 156 (637)
T ss_pred cCcCCCccceeEEEEecccCcCCCCcccccCCccccccccc-ceeeceEEEEEEECCE----EEEEEEecCCcCcCCccc
Confidence 11 1 1211 11111112244569999999544 4499999999997764 455667544 2 11211
Q ss_pred eCcccCCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcc
Q 006934 244 PIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNL 306 (625)
Q Consensus 244 p~~~~~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL 306 (625)
.- ....+||.|.+.++.+ |+.-.-|....|...+..++....|..|.+.+-
T Consensus 157 ~~-~~~~~GT~V~F~PD~~-----------iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~de 207 (637)
T TIGR01058 157 IG-TTKKTGTLVHFHPDPT-----------IFKTTQFNSNIIKERLKESAFLLKKLKLTFTDK 207 (637)
T ss_pred cc-CCCCCceEEEEEeCHH-----------HcCCCccCHHHHHHHHHHHhccCCCcEEEEEec
Confidence 11 2235799988866433 222223444445555555555678999998864
No 29
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=98.31 E-value=1.4e-06 Score=99.98 Aligned_cols=181 Identities=14% Similarity=0.146 Sum_probs=104.9
Q ss_pred CceeeecCH-HHHHHhhcc-c-------------ccCHHHHHHHHHhcccccC-------CCccEEEEEeceeccCCCCC
Q 006934 104 EKNFVRADP-SYLQTLGQA-H-------------SGWIFGAIAELVDNSRDAK-------ATKLEISIESIYFKKAGKDI 161 (625)
Q Consensus 104 ~~~~v~v~p-~~L~sls~~-~-------------~~~~f~AIaELIdNA~DA~-------At~v~I~i~~~~~~~~~~~~ 161 (625)
++++|+..| +||-+.... + ...+...+.|+||||+|.. ++.|.|.|. .
T Consensus 9 ~lE~Vr~RPgmYIGs~~~~~~~~~~~~~~~~~~~~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~----------d 78 (602)
T PHA02569 9 DREHILKRPGMYIGSVAYEAHERFLFGKFTQVEYVPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK----------N 78 (602)
T ss_pred chHHHhcCCCceeCCCCcccccceeecccccccccccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc----------C
Confidence 456667766 677665331 0 1223445789999999952 566666653 4
Q ss_pred CEEEEEeCCCCCChhhHhh--h--hh-----ccc---CCCC-CCCCCcccccCceeeeeccccCCeEEEEEEeCCCCcee
Q 006934 162 PMLSIIDDGHGMTHQDVVR--M--TY-----FGH---KQPD-ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIA 228 (625)
Q Consensus 162 ~~L~I~DNG~GMt~eel~~--~--l~-----fG~---s~k~-~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~ 228 (625)
..++|.|||.||+.+--.. - +. |+. +.+- ....-.-|..|+|.+.+ -.|+..+.|.++..+.
T Consensus 79 gsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svv-NaLS~~~~V~v~~~~~---- 153 (602)
T PHA02569 79 NQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLT-NFFSVLFIGETCDGKN---- 153 (602)
T ss_pred CEEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceee-eccchhhheEEEcCCE----
Confidence 6899999999998753211 0 11 211 1121 11244679999999544 4499999998865543
Q ss_pred EEEEEecCCCccEEEeCcccCCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 006934 229 FLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 307 (625)
Q Consensus 229 ~ls~sf~~g~~~i~Vp~~~~~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 307 (625)
.+.++|..|.....++...-..+||.|.+.++.+- + .. ..|+.+....|...+..++....|.+|.+.+.+
T Consensus 154 ~~~q~f~~G~~~~~~~~~~~~~~GT~V~F~PD~~i-F------~~-~~~~~~~~~~l~~Rl~elA~Ln~Gl~I~l~der 224 (602)
T PHA02569 154 EVTVNCSNGAENISWSTKPGKGKGTSVTFIPDFSH-F------EV-NGLDQQYLDIILDRLQTLAVVFPDIKFTFNGKK 224 (602)
T ss_pred EEEEEecCCcccCCcccCCCCCCccEEEEEECHHH-h------CC-CccCccHHHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 35667755532222222233457999988764331 1 00 122222233444445555555789999998654
No 30
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=98.23 E-value=1.8e-06 Score=101.23 Aligned_cols=189 Identities=17% Similarity=0.170 Sum_probs=114.9
Q ss_pred CCCceeeecCH-HHHHHhhcccccCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 102 PLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 102 ~~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~DA----~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
-.++.+||..| +||.+.+. ..+...+.|+||||+|. .++.|.|.|.. ...++|.|||.||+.+
T Consensus 108 LeGLEaVRkRPGMYIGst~~---~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~---------DgsItV~DnGRGIPvd 175 (903)
T PTZ00109 108 LEGLEAVRKRPGMYIGNTDE---KGLHQLLFEILDNSVDEYLAGECNKITVVLHK---------DGSVEISDNGRGIPCD 175 (903)
T ss_pred hhccHHHhcCCCceeCCCCC---CcceEEEEEEeeccchhhccCCCcEEEEEEcC---------CCeEEEEeCCcccccc
Confidence 46888999999 89876532 22344489999999996 25788888752 4689999999999874
Q ss_pred hHhh--------hhh-------cccCC-------------------C---------------C--CCCCCcccccCceee
Q 006934 177 DVVR--------MTY-------FGHKQ-------------------P---------------D--ADDPNRIGRFGVGFK 205 (625)
Q Consensus 177 el~~--------~l~-------fG~s~-------------------k---------------~--~~~~~~IG~fGvGfK 205 (625)
.-.+ .|. |.... + . ..-.-+-|..|||.
T Consensus 176 ~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~- 254 (903)
T PTZ00109 176 VSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGL- 254 (903)
T ss_pred ccccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcce-
Confidence 3221 111 32210 0 0 00124678999999
Q ss_pred eeccccCCeEEEEEEeCCCCceeEEEEEecCCCc--cEEEeCcccCCCCcEEEEEec-cchhhhhhhh-h---hhhcccC
Q 006934 206 TGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLEIPIVSYYRKGQFMELDTV-VQSEATAKYN-L---KSIKEFS 278 (625)
Q Consensus 206 sA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~--~i~Vp~~~~~~~Gt~i~l~~~-~~~e~~~~~~-l---~~I~kyS 278 (625)
++.-.|+..+.|.+++++. .+.+.|..|.. .+.+-...-..+||.|.+.++ ++- |..... . +.--.-+
T Consensus 255 SVVNALS~~l~VeV~RdGK----~y~q~F~rG~~v~pLkvig~~~~~tGT~VtF~PD~~~I-F~~~~~~~~~~~~~~~~~ 329 (903)
T PTZ00109 255 SVVNALSSFLKVDVFKGGK----IYSIELSKGKVTKPLSVFSCPLKKRGTTIHFLPDYKHI-FKTHHQHTETEEEEGCKN 329 (903)
T ss_pred eeeeeccCeEEEEEEECCE----EEEEEeCCCcccCCccccCCcCCCCceEEEEEeCcchh-cCcccccccccccccccc
Confidence 5555599999999999875 56677755531 111111111347999988664 321 100000 0 0000012
Q ss_pred CCchhhHHHHhhhcccCCCCcEEEEEcccc
Q 006934 279 PFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 308 (625)
Q Consensus 279 pF~s~~I~e~~~~~~~~~~GT~IiI~nL~r 308 (625)
.|....|...+..++....|..|.+.+.+.
T Consensus 330 ~F~~d~L~~RLrElAfLNpGL~I~L~DeR~ 359 (903)
T PTZ00109 330 GFNLDLIKNRIHELSYLNPGLTFYLVDERI 359 (903)
T ss_pred ccCHHHHHHHHHHHhccCCCcEEEEEecCc
Confidence 255555566666666667899999998753
No 31
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.20 E-value=8.9e-07 Score=78.64 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At--~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..+|.||++||+++... .|.|.+.. ..+...|+|.|||.||+.+++..++.-+.+.+. +....+.+|+|
T Consensus 6 l~~il~~ll~Na~~~~~~~~~I~i~~~~------~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~--~~~~~~g~GlG 77 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEGGKIDITIEE------DDDHLSIEISDNGVGIPPEELEKLFEPFFTSDK--SETSISGHGLG 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEEEEE------ETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS--SSGGSSSSSHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEE------ecCeEEEEEEeccccccccccccchhhcccccc--cccccCCCChH
Confidence 567899999999999655 77777764 345788999999999999999998764333322 34556679999
Q ss_pred eeeecc---ccCCeEEEEEEe
Q 006934 204 FKTGAM---RLGKDALVLTQT 221 (625)
Q Consensus 204 fKsA~~---~lg~~v~V~Sk~ 221 (625)
|+.+.. .++-++.+.+..
T Consensus 78 L~~~~~~~~~~~g~l~~~~~~ 98 (111)
T PF02518_consen 78 LYIVKQIAERHGGELTIESSE 98 (111)
T ss_dssp HHHHHHHHHHTTEEEEEEEET
T ss_pred HHHHHHHHHHCCCEEEEEEcC
Confidence 975432 345556665543
No 32
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.19 E-value=4.7e-06 Score=95.87 Aligned_cols=94 Identities=26% Similarity=0.284 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCCCCCCCCcccc
Q 006934 126 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 199 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At-----~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~ 199 (625)
+..++.|||+||+||.+. .|.|.+... +.....|.|.|||.||+++++..+|. |-.+.|-.......|.
T Consensus 37 L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-----g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~ 111 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAEILPDIKVEIEKL-----GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQ 111 (659)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCC
Confidence 447899999999999875 577776531 12234699999999999999999875 3333332112356788
Q ss_pred cCceeeeec----cccCCeEEEEEEeCCC
Q 006934 200 FGVGFKTGA----MRLGKDALVLTQTADS 224 (625)
Q Consensus 200 fGvGfKsA~----~~lg~~v~V~Sk~~~~ 224 (625)
.|+|+.++. +..|..+.|.|+..+.
T Consensus 112 rG~GLa~a~~vsql~~G~pI~I~S~~g~G 140 (659)
T PRK14867 112 QGIGAAGVLLFSQITTGKPLKITTSTGDG 140 (659)
T ss_pred CcccHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 999996544 2347778999987544
No 33
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=98.10 E-value=1e-05 Score=99.32 Aligned_cols=181 Identities=15% Similarity=0.216 Sum_probs=107.0
Q ss_pred CCceeeecCH-HHHHHhhcc--------------------cccCHHHHHHHHHhcccccC--------CCccEEEEEece
Q 006934 103 LEKNFVRADP-SYLQTLGQA--------------------HSGWIFGAIAELVDNSRDAK--------ATKLEISIESIY 153 (625)
Q Consensus 103 ~~~~~v~v~p-~~L~sls~~--------------------~~~~~f~AIaELIdNA~DA~--------At~v~I~i~~~~ 153 (625)
..+++|++.| +||-+.... +...+...+-|+|+||+|.. ++.|.|.|..
T Consensus 14 ~~lEhVr~RP~mYIGS~~~~~~~~wv~~~~~~~m~~~~v~~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~-- 91 (1388)
T PTZ00108 14 TQIEHILLRPDTYIGSIETQTEDMWVYDEEKNRMVYKTITYVPGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDE-- 91 (1388)
T ss_pred cchhHHhcCCCceeCCCCccccceeeecccccccccccccccchhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEec--
Confidence 4566777777 677665331 11235567899999999952 4678888763
Q ss_pred eccCCCCCCEEEEEeCCCCCChhhHhh--h----hhccc---CCCC--CCCCCcccccCceeeeeccccCCeEEEEEEeC
Q 006934 154 FKKAGKDIPMLSIIDDGHGMTHQDVVR--M----TYFGH---KQPD--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA 222 (625)
Q Consensus 154 ~~~~~~~~~~L~I~DNG~GMt~eel~~--~----l~fG~---s~k~--~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~ 222 (625)
....|+|.|||.||+.+--.. + +-||. +.+- ....-.-|+.|+|.+.+.. |+..+.|.++..
T Consensus 92 ------d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNa-lS~~f~Vev~r~ 164 (1388)
T PTZ00108 92 ------ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNI-FSTKFTVECVDS 164 (1388)
T ss_pred ------cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCcccccc-ccceEEEEEEEC
Confidence 246899999999998753211 0 11222 2221 1224567999999965555 999999999987
Q ss_pred --CCCceeEEEEEecCCCccEEEeCc-cc-C-CCCcEEEEEeccchhhhhhhhhhhhcccCCCchhh---HHHHhhhccc
Q 006934 223 --DSRSIAFLSQSLNQGKDNLEIPIV-SY-Y-RKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYL---IGEKAGLFQD 294 (625)
Q Consensus 223 --~~~s~~~ls~sf~~g~~~i~Vp~~-~~-~-~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~---I~e~~~~~~~ 294 (625)
+. .+.++|..|-....-|.. +. . .+||.|.+.++.+ |+.-..|.... |...+..++.
T Consensus 165 ~~gk----~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~PD~~-----------iF~~~~fd~d~~~ll~~Rl~dlA~ 229 (1388)
T PTZ00108 165 KSGK----KFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFYPDYA-----------KFGMTEFDDDMLRLLKKRVYDLAG 229 (1388)
T ss_pred CCCC----EEEEEecCCCcCCCCCccCCCCCCCCceEEEEEeCHH-----------HcCCCccChHHHHHHHHHHHHHhc
Confidence 43 455666544212222221 22 2 5799988866432 11111222221 3333333444
Q ss_pred CCCCcEEEEEccc
Q 006934 295 KCTGTQIYIWNLD 307 (625)
Q Consensus 295 ~~~GT~IiI~nL~ 307 (625)
...|..|.+.+-+
T Consensus 230 ln~GLkI~lnder 242 (1388)
T PTZ00108 230 CFGKLKVYLNGER 242 (1388)
T ss_pred CCCCcEEEEeCcc
Confidence 4678888887654
No 34
>PLN03128 DNA topoisomerase 2; Provisional
Probab=97.99 E-value=2.1e-05 Score=95.58 Aligned_cols=124 Identities=17% Similarity=0.237 Sum_probs=77.9
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhh----h--hhcc---cCCCC
Q 006934 125 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR----M--TYFG---HKQPD 190 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA~-----At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~----~--l~fG---~s~k~ 190 (625)
.+...+-|+|+||+|.. ++.|.|.|.. ....|+|.|||.||+.+--.. . +-|+ .+.+-
T Consensus 52 GL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~--------~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkF 123 (1135)
T PLN03128 52 GLYKIFDEILVNAADNKQRDPSMDSLKVDIDV--------EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNF 123 (1135)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEc--------CCCeEEEEecCccccCCCCCCCCCccceEEEEeecccccc
Confidence 35567899999999964 3678887762 246899999999998753211 0 0122 12221
Q ss_pred --CCCCCcccccCceeeeeccccCCeEEEEEE--eCCCCceeEEEEEecCCCccEEEeCc-cc--CCCCcEEEEEecc
Q 006934 191 --ADDPNRIGRFGVGFKTGAMRLGKDALVLTQ--TADSRSIAFLSQSLNQGKDNLEIPIV-SY--YRKGQFMELDTVV 261 (625)
Q Consensus 191 --~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk--~~~~~s~~~ls~sf~~g~~~i~Vp~~-~~--~~~Gt~i~l~~~~ 261 (625)
....-.-|+.|+|.+.+.. |+..++|.++ +++. .+.++|..|......|.. +. ..+||+|.+.++.
T Consensus 124 dd~~ykvSGGlhGvGasvvNa-LS~~f~Vev~d~r~gk----~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF~PD~ 196 (1135)
T PLN03128 124 DDNEKKTTGGRNGYGAKLANI-FSTEFTVETADGNRGK----KYKQVFTNNMSVKSEPKITSCKASENWTKITFKPDL 196 (1135)
T ss_pred CCccceeeccccCCCCeEEEe-ecCeEEEEEEECCCCe----EEEEEeCCCcccCCCceeccCCCCCCceEEEEEECH
Confidence 1224567999999965555 9999999998 4443 455677555222222221 22 2479999887643
No 35
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.98 E-value=2.4e-05 Score=96.06 Aligned_cols=152 Identities=14% Similarity=0.243 Sum_probs=92.7
Q ss_pred ccCCCCceeeecCH-HHHHHhhc-c-----------------cccCHHHHHHHHHhcccccC-----CCccEEEEEecee
Q 006934 99 QAGPLEKNFVRADP-SYLQTLGQ-A-----------------HSGWIFGAIAELVDNSRDAK-----ATKLEISIESIYF 154 (625)
Q Consensus 99 ~~~~~~~~~v~v~p-~~L~sls~-~-----------------~~~~~f~AIaELIdNA~DA~-----At~v~I~i~~~~~ 154 (625)
+.....+++|+..| +||-+... . +...+...+-|+|+||+|.. ++.|.|.|..
T Consensus 32 Yqkls~lEhVr~RP~mYIGSt~~~~~~~wv~~~~~m~~~~v~~vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~--- 108 (1465)
T PLN03237 32 YQKKSQLEHILLRPDTYIGSIEKHTQTLWVYETDKMVQRSVTYVPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDV--- 108 (1465)
T ss_pred hhccccchHHhcCCCCEeCCCCcccceeeeeccccceeeeccccchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEc---
Confidence 33456688888888 88877652 1 11334577999999999964 4678887762
Q ss_pred ccCCCCCCEEEEEeCCCCCChhhHhh----h--hhccc---CCCC--CCCCCcccccCceeeeeccccCCeEEEEEEeCC
Q 006934 155 KKAGKDIPMLSIIDDGHGMTHQDVVR----M--TYFGH---KQPD--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 223 (625)
Q Consensus 155 ~~~~~~~~~L~I~DNG~GMt~eel~~----~--l~fG~---s~k~--~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~ 223 (625)
....|+|.|||.||+.+--.. . +-||. +.+- ....-.-|+.|+|.+.+.. |+..++|.++...
T Consensus 109 -----~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNa-LS~~f~Vev~Dg~ 182 (1465)
T PLN03237 109 -----EQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNI-FSTEFVIETADGK 182 (1465)
T ss_pred -----CCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCcccccc-ccCeeEEEEEECC
Confidence 256899999999998752111 0 11221 2221 1224567999999965555 9999999998321
Q ss_pred CCceeEEEEEecCCCccEEEeC---cccCCCCcEEEEEecc
Q 006934 224 SRSIAFLSQSLNQGKDNLEIPI---VSYYRKGQFMELDTVV 261 (625)
Q Consensus 224 ~~s~~~ls~sf~~g~~~i~Vp~---~~~~~~Gt~i~l~~~~ 261 (625)
. --.+.++|..+-....-|. ..-..+||.|.+.++.
T Consensus 183 ~--gk~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF~PD~ 221 (1465)
T PLN03237 183 R--QKKYKQVFSNNMGKKSEPVITKCKKSENWTKVTFKPDL 221 (1465)
T ss_pred C--CeEEEEEEeCCCCccCCceeccCCCCCCceEEEEEECH
Confidence 1 1245566644211111121 1112579999876643
No 36
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.98 E-value=4e-06 Score=94.56 Aligned_cols=65 Identities=26% Similarity=0.330 Sum_probs=51.6
Q ss_pred ecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhh
Q 006934 109 RADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM 181 (625)
Q Consensus 109 ~v~p~~L~sl-s~~~~~~~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~ 181 (625)
.++..+-+++ +...+.++..++.|||-||+||+|+.|.|.+.. ....+.|.|||.||..++|...
T Consensus 4 ~L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~--------~t~sv~ViDdG~G~~rdDl~~l 69 (1142)
T KOG1977|consen 4 CLSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNM--------ETFSVQVIDDGFGMGRDDLEKL 69 (1142)
T ss_pred ccchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecC--------ceeEEEEEecCCCccHHHHHHH
Confidence 3444555666 333445678999999999999999999998864 2568899999999999999875
No 37
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.25 E-value=0.00056 Score=58.16 Aligned_cols=73 Identities=18% Similarity=0.368 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At--~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..++.||++||+++... .|.|.+.. ..+...|.|.|+|.||+.+.+...+..+.+... .....+..|+|
T Consensus 6 l~~~~~~l~~n~~~~~~~~~~v~i~~~~------~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~~g~g 77 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPEGGRITVTLER------DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG--RSRKIGGTGLG 77 (111)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC--CCCCCCccccc
Confidence 567899999999999875 66666653 344678999999999999998887654333221 22334567889
Q ss_pred eee
Q 006934 204 FKT 206 (625)
Q Consensus 204 fKs 206 (625)
++.
T Consensus 78 l~~ 80 (111)
T smart00387 78 LSI 80 (111)
T ss_pred HHH
Confidence 864
No 38
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.22 E-value=0.0004 Score=77.79 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=64.5
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccc
Q 006934 125 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 199 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA~A-----t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~ 199 (625)
...+.+.-|||||+||-+ ..|.+.+.. .++.-.|.|.|||+||+++....++..|.|.|. -+.
T Consensus 427 ~litIlGNLidNA~eA~~~~~~~k~I~l~i~~------~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~------~~~ 494 (537)
T COG3290 427 DLVTILGNLIDNALEALLAPEENKEIELSLSD------RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN------TGG 494 (537)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe------cCCEEEEEEeCCCCCCChHHHHHHHhcCccccC------CCC
Confidence 367889999999999976 457777764 455678899999999999999999999999875 233
Q ss_pred cCceeee---eccccCCeEEEEEE
Q 006934 200 FGVGFKT---GAMRLGKDALVLTQ 220 (625)
Q Consensus 200 fGvGfKs---A~~~lg~~v~V~Sk 220 (625)
-|+|++. ..=+++..++|.+.
T Consensus 495 rGiGL~Lvkq~V~~~~G~I~~~s~ 518 (537)
T COG3290 495 RGIGLYLVKQLVERLGGSIEVESE 518 (537)
T ss_pred CchhHHHHHHHHHHcCceEEEeeC
Confidence 4888863 22356777777775
No 39
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.17 E-value=0.00055 Score=57.24 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=54.8
Q ss_pred HHHHHHHHhcccccCC---CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 127 FGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 127 f~AIaELIdNA~DA~A---t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
..++.|||+||+++.+ ..|.|.+.. ..+...|.|.|+|.||++..+...+...... ......+..|+|
T Consensus 2 ~~~~~~ll~Na~~~~~~~~~~v~i~~~~------~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~---~~~~~~~~~g~g 72 (103)
T cd00075 2 QQVLLNLLSNAIKHTPEGGGRITISVER------DGDHLEIRVEDNGPGIPEEDLERIFERFSDG---SRSRKGGGTGLG 72 (103)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---CCCCCCCccccC
Confidence 3579999999999977 445555542 3345678999999999999988776422111 112334567888
Q ss_pred eeeecc---ccCCeEEEEEE
Q 006934 204 FKTGAM---RLGKDALVLTQ 220 (625)
Q Consensus 204 fKsA~~---~lg~~v~V~Sk 220 (625)
++.+.- +.+..+.+.+.
T Consensus 73 l~~~~~~~~~~~g~~~~~~~ 92 (103)
T cd00075 73 LSIVKKLVELHGGRIEVESE 92 (103)
T ss_pred HHHHHHHHHHcCCEEEEEeC
Confidence 864321 23456666553
No 40
>PRK10604 sensor protein RstB; Provisional
Probab=97.02 E-value=0.0015 Score=72.00 Aligned_cols=89 Identities=16% Similarity=0.211 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCceee
Q 006934 126 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 205 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGfK 205 (625)
+..++..||+||+.+....|.|.+.. .++.-.|.|.|||.||+++++.+.+.-.+..... ....-|.+|+|+.
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~------~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~-~~~~~~g~GLGL~ 392 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLL------DGNQACLIVEDDGPGIPPEERERVFEPFVRLDPS-RDRATGGCGLGLA 392 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEE------ECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCC-CCCCCCCccchHH
Confidence 56789999999999988888888764 2345679999999999999999987533322111 1122356799984
Q ss_pred ee---ccccCCeEEEEEEe
Q 006934 206 TG---AMRLGKDALVLTQT 221 (625)
Q Consensus 206 sA---~~~lg~~v~V~Sk~ 221 (625)
-+ .-..|.++.|.+..
T Consensus 393 ivk~i~~~~gG~i~v~s~~ 411 (433)
T PRK10604 393 IVHSIALAMGGSVNCDESE 411 (433)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 32 22456666666643
No 41
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.82 E-value=0.0025 Score=69.57 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCceee
Q 006934 126 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 205 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGfK 205 (625)
+..++.+||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.++.... ....-+.+|+|+.
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~-~~~~~~g~GlGL~ 426 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSV------DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEA-RDRESGGTGLGLA 426 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEE------ECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcc-cCCCCCCcchhHH
Confidence 45679999999999988888887764 2345579999999999999998887533322211 1122356788885
Q ss_pred ee---ccccCCeEEEEEE
Q 006934 206 TG---AMRLGKDALVLTQ 220 (625)
Q Consensus 206 sA---~~~lg~~v~V~Sk 220 (625)
.+ ....+.++.+.|.
T Consensus 427 iv~~~v~~~~G~l~~~s~ 444 (461)
T PRK09470 427 IVENAIQQHRGWVKAEDS 444 (461)
T ss_pred HHHHHHHHCCCEEEEEEC
Confidence 32 1235566666553
No 42
>PRK10364 sensor protein ZraS; Provisional
Probab=96.79 E-value=0.0023 Score=70.65 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A--t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..++..||+||+++.+ ..|.|.+.. ..+.-.|.|.|||.||+++.+.+.|..+++.+. +..|+|
T Consensus 349 l~~il~NLl~NA~k~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-------~g~GlG 415 (457)
T PRK10364 349 LTQVLLNLYLNAIQAIGQHGVISVTASE------SGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA-------EGTGLG 415 (457)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------eCCeEEEEEEECCCCCCHHHHHHHhCccccCCC-------CCCccc
Confidence 56779999999999843 456776653 234468999999999999999998875555442 235888
Q ss_pred eeeec---cccCCeEEEEEE
Q 006934 204 FKTGA---MRLGKDALVLTQ 220 (625)
Q Consensus 204 fKsA~---~~lg~~v~V~Sk 220 (625)
++.+- -..|.++.|.+.
T Consensus 416 L~iv~~~v~~~gG~i~i~s~ 435 (457)
T PRK10364 416 LAVVHNIVEQHGGTIQVASQ 435 (457)
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 75321 235666666554
No 43
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.70 E-value=0.0021 Score=64.94 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=51.1
Q ss_pred cCHHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCc
Q 006934 124 GWIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 202 (625)
Q Consensus 124 ~~~f~AIaELIdNA~DA~A-t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGv 202 (625)
.++..+|..||+||++|.. ..|.|.+.. ..+.-.|.|.|||.||+++.+...+...++.+... . ..|+
T Consensus 227 ~~l~~vl~nLi~NAi~~~~~~~i~i~~~~------~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~--~---g~Gl 295 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTPGGEITISVRQ------DDEQVTISVEDTGPGIPEEELERIFEPFFRTDKSR--S---GTGL 295 (336)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEEe------cCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCC--C---CCCc
Confidence 3466789999999999994 778877763 22246899999999999999888876544444211 1 3467
Q ss_pred eee
Q 006934 203 GFK 205 (625)
Q Consensus 203 GfK 205 (625)
|++
T Consensus 296 GL~ 298 (336)
T COG0642 296 GLA 298 (336)
T ss_pred cHH
Confidence 764
No 44
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.62 E-value=0.0057 Score=66.46 Aligned_cols=89 Identities=17% Similarity=0.208 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcccccCCCc--cEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKATK--LEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At~--v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..+|..||+||+.+.... |.|.+.. ...+.-.|.|.|||.||+++++.++|.-.+..+. ....+.+|+|
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~-----~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~---~~~~~G~GLG 344 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLH-----RTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR---DEGTEGYGIG 344 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEe-----cCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC---CCCCCccccc
Confidence 4567999999999987644 4444321 1233457899999999999999998853332221 1122457888
Q ss_pred eeeec---cccCCeEEEEEEeC
Q 006934 204 FKTGA---MRLGKDALVLTQTA 222 (625)
Q Consensus 204 fKsA~---~~lg~~v~V~Sk~~ 222 (625)
+..+. -..|.++.|.|...
T Consensus 345 L~i~~~iv~~~gG~i~v~s~~~ 366 (380)
T PRK09303 345 LSVCRRIVRVHYGQIWVDSEPG 366 (380)
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 85321 24577777766543
No 45
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.60 E-value=0.0036 Score=66.53 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=58.4
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCc
Q 006934 125 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 202 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA~A--t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGv 202 (625)
++..++..||+||+.+.. ..|.|.+.. .++.-.|.|.|||.||+++++.+.+...+.... .-+..|+
T Consensus 247 ~l~~il~nLi~NA~k~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~Gl 315 (356)
T PRK10755 247 LLRLLLRNLVENAHRYSPEGSTITIKLSQ------EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS-----RYGGIGL 315 (356)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC-----CCCCcCH
Confidence 456789999999999853 457777653 344568999999999999999988753332211 1235688
Q ss_pred eeeee---ccccCCeEEEEEEe
Q 006934 203 GFKTG---AMRLGKDALVLTQT 221 (625)
Q Consensus 203 GfKsA---~~~lg~~v~V~Sk~ 221 (625)
|++.+ .-..|..+.+.|..
T Consensus 316 GL~i~~~i~~~~gg~i~i~s~~ 337 (356)
T PRK10755 316 GLSIVSRITQLHHGQFFLQNRQ 337 (356)
T ss_pred HHHHHHHHHHHCCCEEEEEECC
Confidence 87532 12356666666644
No 46
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.56 E-value=0.0037 Score=67.97 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A--t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..++.+||+||+++.. ..|.|.+.. .++.-.|+|.|||.||+++.+.+.+.-.+..+... ...-+..|+|
T Consensus 354 l~~~~~nll~Nai~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~-~~~~~g~GlG 426 (457)
T TIGR01386 354 FRRAISNLLSNALRHTPDGGTITVRIER------RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPAR-SNSGEGTGLG 426 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhccccccCCccc-CCCCCCcccc
Confidence 56789999999999874 356666653 33456799999999999999988875333322111 1122346888
Q ss_pred eeeec---cccCCeEEEEE
Q 006934 204 FKTGA---MRLGKDALVLT 219 (625)
Q Consensus 204 fKsA~---~~lg~~v~V~S 219 (625)
++.+. -+.|..+.+.+
T Consensus 427 L~i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 427 LAIVRSIMEAHGGRASAES 445 (457)
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 75321 13455555554
No 47
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.47 E-value=0.0095 Score=61.32 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At--~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..++.+||.||+++... .|.|.+.. ..+.-.|.|.|||.||+++.+.+++...+..... .....+..|+|
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~------~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~-~~~~~~g~glG 302 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRR------DGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKS-RSRDTGGTGLG 302 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEE------cCCEEEEEEEecCCCCCHHHHhhhccCceecCcc-cccCCCCCccc
Confidence 567899999999998654 45555442 2334679999999999999999887633322211 01112335888
Q ss_pred eeeec---cccCCeEEEEEEe
Q 006934 204 FKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 204 fKsA~---~~lg~~v~V~Sk~ 221 (625)
++.+- -..|.++.+.|..
T Consensus 303 L~~~~~~~~~~gG~i~~~s~~ 323 (333)
T TIGR02966 303 LAIVKHVLSRHHARLEIESEL 323 (333)
T ss_pred HHHHHHHHHHCCCEEEEEecC
Confidence 86422 1356777776643
No 48
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.45 E-value=0.005 Score=67.13 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcccccCCCc----cEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccC
Q 006934 126 IFGAIAELVDNSRDAKATK----LEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 201 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At~----v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fG 201 (625)
+..++.+||.||+++.+.. ..|.+... ...+.-.|+|.|||.||+++.+.+.|...++.+.. . .+.-|
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~----~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~---~-~~G~G 459 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTA----LNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG---S-RKHIG 459 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEE----ecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC---C-CCCCc
Confidence 4567999999999984332 33444321 13445689999999999999999888633333321 1 23357
Q ss_pred ceeeeec---cccCCeEEEEEE
Q 006934 202 VGFKTGA---MRLGKDALVLTQ 220 (625)
Q Consensus 202 vGfKsA~---~~lg~~v~V~Sk 220 (625)
+|++.+- -.+|.++.|.|.
T Consensus 460 lGL~i~~~iv~~~gG~i~~~s~ 481 (494)
T TIGR02938 460 MGLSVAQEIVADHGGIIDLDDD 481 (494)
T ss_pred ccHHHHHHHHHHcCCEEEEEEC
Confidence 8875321 135667766663
No 49
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.41 E-value=0.005 Score=67.07 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCceee
Q 006934 126 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 205 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGfK 205 (625)
+..++..||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-++.... ... .+.+|+|+.
T Consensus 332 l~~il~NLl~NA~k~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~--~~~-~~g~GlGL~ 402 (435)
T PRK09467 332 IKRALANLVVNAARYGNGWIKVSSGT------EGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDS--ARG-SSGTGLGLA 402 (435)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEe------cCCEEEEEEEecCCCcCHHHHHHhcCCcccCCC--CCC-CCCeehhHH
Confidence 45679999999999988888887763 233457999999999999999988753332211 111 245788874
Q ss_pred eec---cccCCeEEEEE
Q 006934 206 TGA---MRLGKDALVLT 219 (625)
Q Consensus 206 sA~---~~lg~~v~V~S 219 (625)
-+- -..+.++.+.+
T Consensus 403 iv~~i~~~~~g~l~i~~ 419 (435)
T PRK09467 403 IVKRIVDQHNGKVELGN 419 (435)
T ss_pred HHHHHHHHCCCEEEEEE
Confidence 221 12455555544
No 50
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.35 E-value=0.0071 Score=66.38 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=56.3
Q ss_pred CHHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCc
Q 006934 125 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 202 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA~At--~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGv 202 (625)
.+..++..||+||+++... .|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.+..+.. .....|..|+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~GL 389 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQR------VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKA-RSRQTGGSGL 389 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCC-CCCCCCCCch
Confidence 3567899999999999654 35554442 2345679999999999999999987533322211 1122345688
Q ss_pred eeeeec---cccCCeEEEEEE
Q 006934 203 GFKTGA---MRLGKDALVLTQ 220 (625)
Q Consensus 203 GfKsA~---~~lg~~v~V~Sk 220 (625)
|+..+- -..|.++.|.|.
T Consensus 390 GL~ivk~iv~~~gG~i~i~s~ 410 (430)
T PRK11006 390 GLAIVKHALSHHDSRLEIESE 410 (430)
T ss_pred HHHHHHHHHHHCCCEEEEEec
Confidence 875321 134566666554
No 51
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.32 E-value=0.0053 Score=69.16 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcccccC------CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccc
Q 006934 126 IFGAIAELVDNSRDAK------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 199 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~------At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~ 199 (625)
+...+.+||+||+++. ...|.|.+.. ..+.-.|.|.|||.||+++++.+.|..+++.+.. .-|.
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~----~~~g 502 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD----EPGE 502 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC----CCCC
Confidence 4567899999999983 3456666653 3345678999999999999999988766654421 1234
Q ss_pred cCceeeeec---cccCCeEEEEE
Q 006934 200 FGVGFKTGA---MRLGKDALVLT 219 (625)
Q Consensus 200 fGvGfKsA~---~~lg~~v~V~S 219 (625)
.|+|++.+- -..+..+.|.|
T Consensus 503 ~GlGL~ivk~iv~~~~G~i~v~s 525 (545)
T PRK15053 503 HGIGLYLIASYVTRCGGVITLED 525 (545)
T ss_pred ceeCHHHHHHHHHHcCCEEEEEE
Confidence 588885321 12445555554
No 52
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.28 E-value=0.0075 Score=66.21 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At--~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..++.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+.+.-.+..+.. .....|..|+|
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~-~~~~~~g~GlG 425 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQ------RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGS-RNRASGGSGLG 425 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCC-cCCCCCCCcHH
Confidence 456899999999998654 46666553 3345678999999999999999887532322211 12234567888
Q ss_pred eeee---ccccCCeEEEEEE
Q 006934 204 FKTG---AMRLGKDALVLTQ 220 (625)
Q Consensus 204 fKsA---~~~lg~~v~V~Sk 220 (625)
++.+ .-..+.++.+.+.
T Consensus 426 L~iv~~i~~~~~G~l~~~s~ 445 (466)
T PRK10549 426 LAICLNIVEAHNGRIIAAHS 445 (466)
T ss_pred HHHHHHHHHHcCCEEEEEEC
Confidence 8532 1234566666654
No 53
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.14 E-value=0.0085 Score=66.90 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcccccCC----CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccC
Q 006934 126 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 201 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A----t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fG 201 (625)
+..++.+|++||+++.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+.|.-+++.+. +..|
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-------~g~G 500 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHY------RNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-------SNRG 500 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHhCCCccCC-------CCCc
Confidence 55789999999999842 346666553 344567899999999999999998865554442 1248
Q ss_pred ceeeeec---cccCCeEEEEE
Q 006934 202 VGFKTGA---MRLGKDALVLT 219 (625)
Q Consensus 202 vGfKsA~---~~lg~~v~V~S 219 (625)
+|+..+- -..+..+.|.|
T Consensus 501 lGL~iv~~iv~~~~G~i~v~s 521 (542)
T PRK11086 501 VGLYLVKQSVENLGGSIAVES 521 (542)
T ss_pred CcHHHHHHHHHHcCCEEEEEe
Confidence 8875321 13455555555
No 54
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.10 E-value=0.0085 Score=70.14 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhh-HhhhhhcccCCCCCCCCCcccccCc
Q 006934 126 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD-VVRMTYFGHKQPDADDPNRIGRFGV 202 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A--t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~ee-l~~~l~fG~s~k~~~~~~~IG~fGv 202 (625)
+..++.+||+||+++.. ..|.|.+.. .++.-.|.|.|||.||+++. ..+.+...++.+. +..|+
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~-------~G~GL 646 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVER------ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG-------AGMGI 646 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEE------cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC-------CCcch
Confidence 45679999999999964 457777653 23456799999999999998 5556654343331 34588
Q ss_pred eeeeec---cccCCeEEEEEEe
Q 006934 203 GFKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 203 GfKsA~---~~lg~~v~V~Sk~ 221 (625)
|++.+- -..|.++.|.|..
T Consensus 647 GL~i~~~iv~~~gG~i~v~s~~ 668 (679)
T TIGR02916 647 GVYECRQYVEEIGGRIEVESTP 668 (679)
T ss_pred hHHHHHHHHHHcCCEEEEEecC
Confidence 875331 2356666666643
No 55
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.09 E-value=0.011 Score=64.44 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=57.9
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCc
Q 006934 125 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 202 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA~A--t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGv 202 (625)
.+..++.+||.||+.+.. ..|.|.+.. .++...|+|.|||.||+++++.+.+.-.++.+.. . ..-+..|+
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~-~~~~~~Gl 439 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEV------DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-A-NGRKSTGL 439 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-C-CCCCCcch
Confidence 466789999999999854 457776653 3456679999999999999999887643332210 1 11134588
Q ss_pred eeeeec---cccCCeEEEEEE
Q 006934 203 GFKTGA---MRLGKDALVLTQ 220 (625)
Q Consensus 203 GfKsA~---~~lg~~v~V~Sk 220 (625)
|++.+- ..++..+.+.|.
T Consensus 440 GL~i~~~~~~~~~G~i~i~s~ 460 (475)
T PRK11100 440 GLAFVREVARLHGGEVTLRNR 460 (475)
T ss_pred hHHHHHHHHHHCCCEEEEEEc
Confidence 876422 135566666664
No 56
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.00 E-value=0.011 Score=66.44 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCceee
Q 006934 126 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 205 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGfK 205 (625)
+..++..||+||+++....+.|.+.. .++.-.|.|.|||.||+++++...|.-++.... ..+..|+|+.
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~-----~~~G~GLGL~ 447 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQ------TDEHLHIVVEDDGPGIPESKRELIFDRGQRADT-----LRPGQGLGLS 447 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC-----CCCCcchhHH
Confidence 45689999999999987778777653 234557999999999999999888753332211 1123688885
Q ss_pred eec---cccCCeEEEEE
Q 006934 206 TGA---MRLGKDALVLT 219 (625)
Q Consensus 206 sA~---~~lg~~v~V~S 219 (625)
.+- -..|.++.|.+
T Consensus 448 Ivk~iv~~~gG~i~v~s 464 (485)
T PRK10815 448 VAREITEQYEGKISAGD 464 (485)
T ss_pred HHHHHHHHcCCEEEEEE
Confidence 321 13455555544
No 57
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=95.86 E-value=0.017 Score=64.58 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcccccCCCc--cEEEEEeceeccCCCCC-CEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCc
Q 006934 126 IFGAIAELVDNSRDAKATK--LEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 202 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At~--v~I~i~~~~~~~~~~~~-~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGv 202 (625)
+..++.+||+||+.+.... |.|.+.. ..+. -.|.|.|||.||+++++...+...++.+. +..|+
T Consensus 501 l~~~~~nli~na~~~~~~~~~i~v~~~~------~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-------~g~gl 567 (607)
T PRK11360 501 LKQVLLNILINAVQAISARGKIRIRTWQ------YSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA-------KGTGL 567 (607)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEE------cCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC-------CCCch
Confidence 5677999999999986544 4444432 2223 78999999999999999888764443332 13477
Q ss_pred eeeee---ccccCCeEEEEEEe
Q 006934 203 GFKTG---AMRLGKDALVLTQT 221 (625)
Q Consensus 203 GfKsA---~~~lg~~v~V~Sk~ 221 (625)
|+..+ .-.+|.++.|.|..
T Consensus 568 GL~~~~~~~~~~~G~i~~~s~~ 589 (607)
T PRK11360 568 GLALSQRIINAHGGDIEVESEP 589 (607)
T ss_pred hHHHHHHHHHHcCCEEEEEEcC
Confidence 76532 12356677766643
No 58
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.69 E-value=0.014 Score=66.23 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcccccCC----CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCC
Q 006934 126 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 189 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A----t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k 189 (625)
+...+--||.||+||-+ ..|.|.... .++.-.|+|.|||.|+.++-+..+|..-++.|
T Consensus 498 LeQVLvNLl~NALDA~~~~~~~~i~i~~~~------~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK 559 (603)
T COG4191 498 LEQVLVNLLQNALDAMAGQEDRRLSIRAQR------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTK 559 (603)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeeEEEEEe------cCCeEEEEEccCCCCCCHHHHHhhcCCccccC
Confidence 66779999999999954 467777653 45667899999999999999999986333333
No 59
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.68 E-value=0.033 Score=51.39 Aligned_cols=81 Identities=20% Similarity=0.145 Sum_probs=48.0
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccc
Q 006934 125 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 199 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA~-----At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~ 199 (625)
.+..++.||+.||+..+ ...|.|.+.. ..+.-.|.|.|+|.||+. +...+....+.+. ..+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~------~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~-----~~~~ 105 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEENCEGVVYISATI------EDHEVYITVRDEGIGIEN--LEEAREPLYTSKP-----ELER 105 (137)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEE------eCCEEEEEEEEcCCCcCc--hhHhhCCCcccCC-----CCCC
Confidence 35678999999999753 2356776653 234567899999999973 3344432222221 1134
Q ss_pred cCceeeeeccccCCeEEEEE
Q 006934 200 FGVGFKTGAMRLGKDALVLT 219 (625)
Q Consensus 200 fGvGfKsA~~~lg~~v~V~S 219 (625)
.|+|+... -++..++.+.+
T Consensus 106 ~GlGL~lv-~~~~~~l~~~~ 124 (137)
T TIGR01925 106 SGMGFTVM-ENFMDDVSVDS 124 (137)
T ss_pred CcccHHHH-HHhCCcEEEEE
Confidence 57787432 23455555554
No 60
>PRK10337 sensor protein QseC; Provisional
Probab=95.55 E-value=0.025 Score=61.94 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCceee
Q 006934 126 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 205 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGfK 205 (625)
+..++..||+||+.+....-.|.+... ...|+|.|||.||+++++.+.+.-.+..+. ...+.+|+|+.
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~--------~~~i~i~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 420 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLN--------ARNFTVRDNGPGVTPEALARIGERFYRPPG----QEATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEE--------eeEEEEEECCCCCCHHHHHHhcccccCCCC----CCCCccchHHH
Confidence 456799999999998765434444320 237999999999999999988752222211 12244788875
Q ss_pred eec---cccCCeEEEEEE
Q 006934 206 TGA---MRLGKDALVLTQ 220 (625)
Q Consensus 206 sA~---~~lg~~v~V~Sk 220 (625)
-+- -..|.++.|.+.
T Consensus 421 iv~~i~~~~gg~l~~~s~ 438 (449)
T PRK10337 421 IVRRIAKLHGMNVSFGNA 438 (449)
T ss_pred HHHHHHHHcCCEEEEEec
Confidence 321 234666666553
No 61
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.45 E-value=0.031 Score=67.11 Aligned_cols=86 Identities=10% Similarity=0.183 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCcee
Q 006934 126 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 204 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A-t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGf 204 (625)
+..+|..||+||+++.. ..|.|.+.. ..+.-.|+|.|||.||+++++.+.|...+..+. ..+..|+|+
T Consensus 514 l~~il~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~GLGL 582 (921)
T PRK15347 514 LRQILVNLLGNAVKFTETGGIRLRVKR------HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT-----HSQGTGLGL 582 (921)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC-----CCCCCchHH
Confidence 56779999999999853 457777653 334567999999999999999988753222221 124568887
Q ss_pred eeec---cccCCeEEEEEEeC
Q 006934 205 KTGA---MRLGKDALVLTQTA 222 (625)
Q Consensus 205 KsA~---~~lg~~v~V~Sk~~ 222 (625)
..+- -.+|.++.|.|...
T Consensus 583 ~i~~~~~~~~gG~i~i~s~~~ 603 (921)
T PRK15347 583 TIASSLAKMMGGELTLFSTPG 603 (921)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 5322 13577787777543
No 62
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.29 E-value=0.031 Score=66.24 Aligned_cols=92 Identities=14% Similarity=0.238 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCcee
Q 006934 126 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 204 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A-t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGf 204 (625)
+..++..||+||+++.. ..|.|.+... ..+.-.|.|.|||.||+++++.+.|...+..+........+.-|+|+
T Consensus 399 l~qvl~NLl~NAik~~~~g~v~i~~~~~-----~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL 473 (779)
T PRK11091 399 LRQILWNLISNAVKFTQQGGVTVRVRYE-----EGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGL 473 (779)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEEc-----cCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHH
Confidence 56789999999999864 4567766531 13346789999999999999999886333322111222235567777
Q ss_pred eee---ccccCCeEEEEEEeC
Q 006934 205 KTG---AMRLGKDALVLTQTA 222 (625)
Q Consensus 205 KsA---~~~lg~~v~V~Sk~~ 222 (625)
..+ .-..|.++.|.|...
T Consensus 474 ~i~~~iv~~~gG~i~v~s~~g 494 (779)
T PRK11091 474 AVSKRLAQAMGGDITVTSEEG 494 (779)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 422 124688888887654
No 63
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.21 E-value=0.043 Score=64.80 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A--t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..+|..||+||+++.. ..|.|.+.. ..+.-.|+|.|||.||+++++.+.|.-.++.+.. ....-+..|+|
T Consensus 598 L~~il~NLI~NAik~s~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~-~~~~~~g~GLG 670 (703)
T TIGR03785 598 IAQMLDKLVDNAREFSPEDGLIEVGLSQ------NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQ-GAQDQPHLGLG 670 (703)
T ss_pred HHHHHHHHHHHHHHHCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCC-CCCCCCCccHH
Confidence 45679999999999854 346665543 3345679999999999999999988643332211 11112347888
Q ss_pred eeeec---cccCCeEEEEEEe
Q 006934 204 FKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 204 fKsA~---~~lg~~v~V~Sk~ 221 (625)
++.+- ...|.++.+.+..
T Consensus 671 L~Ivr~Iv~~~gG~I~v~s~~ 691 (703)
T TIGR03785 671 LYIVRLIADFHQGRIQAENRQ 691 (703)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 86432 2356666666643
No 64
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=95.19 E-value=0.034 Score=58.65 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeceec--cCCCC----CCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCccc
Q 006934 126 IFGAIAELVDNSRDAK-ATKLEISIESIYFK--KAGKD----IPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 198 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~-At~v~I~i~~~~~~--~~~~~----~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG 198 (625)
+..++..||+||+.+. .....|.+...... ..... ...|.|.|||.||+++.+.+.|.-+++.+. +
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-------~ 310 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-------G 310 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-------C
Confidence 5678999999999975 33333433321000 00001 136899999999999998887753333331 2
Q ss_pred ccCceeeee---ccccCCeEEEEEE
Q 006934 199 RFGVGFKTG---AMRLGKDALVLTQ 220 (625)
Q Consensus 199 ~fGvGfKsA---~~~lg~~v~V~Sk 220 (625)
..|+|+..+ .-..|.++.|.|.
T Consensus 311 g~GlGL~i~~~iv~~~gG~i~~~s~ 335 (348)
T PRK11073 311 GTGLGLSIARNLIDQHSGKIEFTSW 335 (348)
T ss_pred CccCCHHHHHHHHHHcCCeEEEEec
Confidence 247787422 2245666777664
No 65
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.13 E-value=0.037 Score=66.38 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceecc---------CCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCC
Q 006934 126 IFGAIAELVDNSRDAKA--TKLEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 194 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A--t~v~I~i~~~~~~~---------~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~ 194 (625)
+..++..||+||+++.. ..|.|.+....... ..++.-.|.|.|||.||+++++.++|...++.+.
T Consensus 561 L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---- 636 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---- 636 (828)
T ss_pred HHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC----
Confidence 56789999999999743 45666665310000 0123346899999999999999988763333221
Q ss_pred CcccccCceeeee---ccccCCeEEEEEEe
Q 006934 195 NRIGRFGVGFKTG---AMRLGKDALVLTQT 221 (625)
Q Consensus 195 ~~IG~fGvGfKsA---~~~lg~~v~V~Sk~ 221 (625)
+..|+|+..+ .-..|.++.|.|..
T Consensus 637 ---~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 637 ---GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred ---CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 4568887532 12467778777754
No 66
>PRK09835 sensor kinase CusS; Provisional
Probab=95.11 E-value=0.042 Score=60.50 Aligned_cols=87 Identities=14% Similarity=0.184 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCCCCCCCCcccccCc
Q 006934 126 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGV 202 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A--t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~fGv 202 (625)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++...+. |-..... ....-+..|+
T Consensus 376 l~~vl~nll~Na~~~~~~~~~I~i~~~~------~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~--~~~~~~g~Gl 447 (482)
T PRK09835 376 LRRAISNLLSNALRYTPAGEAITVRCQE------VDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPS--RQRKGEGSGI 447 (482)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC--CCCCCCCcch
Confidence 56789999999999854 346666653 23345799999999999999988875 3222211 1112245688
Q ss_pred eeeee---ccccCCeEEEEEE
Q 006934 203 GFKTG---AMRLGKDALVLTQ 220 (625)
Q Consensus 203 GfKsA---~~~lg~~v~V~Sk 220 (625)
|+.-+ .-..+.++.|.|.
T Consensus 448 GL~i~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 448 GLAIVKSIVVAHKGTVAVTSD 468 (482)
T ss_pred HHHHHHHHHHHCCCEEEEEEC
Confidence 88432 1235666666653
No 67
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=94.65 E-value=0.069 Score=64.27 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCcee
Q 006934 126 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 204 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A-t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGf 204 (625)
+..++..||+||+.+.. ..|.|.+.. ....-.|.|.|||.||+++++.+.|...+... ...|..|+|+
T Consensus 562 l~qil~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-----~~~~g~GLGL 630 (914)
T PRK11466 562 IRQVITNLLSNALRFTDEGSIVLRSRT------DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS-----GKRGGTGLGL 630 (914)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHhchhhcCC-----CCCCCCcccH
Confidence 45679999999999853 456666553 23455799999999999999998875322211 1125568887
Q ss_pred eee---ccccCCeEEEEEEeC
Q 006934 205 KTG---AMRLGKDALVLTQTA 222 (625)
Q Consensus 205 KsA---~~~lg~~v~V~Sk~~ 222 (625)
..+ .-.+|.++.|.|...
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~~ 651 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTPE 651 (914)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 432 124678888887654
No 68
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=94.63 E-value=0.033 Score=53.54 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCccccc
Q 006934 126 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 200 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A-----t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~f 200 (625)
+..|+.|++.||+..+- ..|.|.+.. ..+.-.+.|.|+|.||+++.+...+......+.. +...-|
T Consensus 43 l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~-~~~~~~-- 113 (161)
T PRK04069 43 MKIAVSEACTNAVQHAYKEDEVGEIHIRFEI------YEDRLEIVVADNGVSFDYETLKSKLGPYDISKPI-EDLREG-- 113 (161)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------ECCEEEEEEEECCcCCChHHhccccCCCCCCCcc-cccCCC--
Confidence 55789999999998753 246666553 3456789999999999988876665432211111 111122
Q ss_pred CceeeeeccccCCeEEEEE
Q 006934 201 GVGFKTGAMRLGKDALVLT 219 (625)
Q Consensus 201 GvGfKsA~~~lg~~v~V~S 219 (625)
|+|+...- .+.+++.+.+
T Consensus 114 G~GL~li~-~l~d~v~~~~ 131 (161)
T PRK04069 114 GLGLFLIE-TLMDDVTVYK 131 (161)
T ss_pred ceeHHHHH-HHHHhEEEEc
Confidence 77774332 3566666553
No 69
>PRK10490 sensor protein KdpD; Provisional
Probab=94.58 E-value=0.055 Score=65.67 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At--~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..++..||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+.|.-.++.+. ....+-.|+|
T Consensus 779 L~qVL~NLL~NAik~s~~g~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~---~~~~~G~GLG 849 (895)
T PRK10490 779 FERVLINLLENAVKYAGAQAEIGIDAHV------EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK---ESAIPGVGLG 849 (895)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCC---CCCCCCccHH
Confidence 567899999999998643 46665542 334567899999999999999888753232221 1122346788
Q ss_pred eeeec---cccCCeEEEEEEe
Q 006934 204 FKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 204 fKsA~---~~lg~~v~V~Sk~ 221 (625)
+..+- -..|.++.+.|..
T Consensus 850 L~Ivk~ive~hGG~I~v~s~~ 870 (895)
T PRK10490 850 LAICRAIVEVHGGTIWAENRP 870 (895)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 75321 1356677776643
No 70
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=94.50 E-value=0.075 Score=64.23 Aligned_cols=87 Identities=16% Similarity=0.265 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCC-CEEEEEeCCCCCChhhHhhhhh-cccCCCCCCCCCcccccCc
Q 006934 126 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGV 202 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A-t~v~I~i~~~~~~~~~~~~-~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~fGv 202 (625)
+..+|..||+||+.+.. ..|.|.+.. ..+. -.|.|.|+|.||+++++.+.|. |..... ....|..|+
T Consensus 580 l~~il~nLi~NAik~~~~g~i~i~~~~------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~~g~GL 649 (968)
T TIGR02956 580 IRQVLINLVGNAIKFTDRGSVVLRVSL------NDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADG----RRRSGGTGL 649 (968)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEEEE------cCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCC----CCCCCCccH
Confidence 45679999999999854 457777653 2233 6799999999999999998875 433221 122355688
Q ss_pred eeeee---ccccCCeEEEEEEeC
Q 006934 203 GFKTG---AMRLGKDALVLTQTA 222 (625)
Q Consensus 203 GfKsA---~~~lg~~v~V~Sk~~ 222 (625)
|+..+ .-.+|.++.|.|...
T Consensus 650 GL~i~~~l~~~~gG~i~~~s~~~ 672 (968)
T TIGR02956 650 GLAISQRLVEAMDGELGVESELG 672 (968)
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 87532 124677888877544
No 71
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.33 E-value=0.079 Score=47.92 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCccccc
Q 006934 126 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 200 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At-----~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~f 200 (625)
+..|+.|++.||+..+.. .|.|.+.. ....-.|.|.|+|.|+++..+.....-.. .... .-
T Consensus 32 ~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~------~~~~l~i~v~D~G~~~d~~~~~~~~~~~~------~~~~--~~ 97 (125)
T PF13581_consen 32 LELAVSEALTNAVEHGYPGDPDGPVDVRLEV------DPDRLRISVRDNGPGFDPEQLPQPDPWEP------DSLR--EG 97 (125)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE------cCCEEEEEEEECCCCCChhhccCcccccC------CCCC--CC
Confidence 568999999999998653 46666553 44567899999999999876544321111 1122 22
Q ss_pred CceeeeeccccCCeEEE
Q 006934 201 GVGFKTGAMRLGKDALV 217 (625)
Q Consensus 201 GvGfKsA~~~lg~~v~V 217 (625)
|.|+... -++++++.+
T Consensus 98 G~Gl~li-~~l~D~~~~ 113 (125)
T PF13581_consen 98 GRGLFLI-RSLMDEVDY 113 (125)
T ss_pred CcCHHHH-HHHHcEEEE
Confidence 6676433 247888887
No 72
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.07 E-value=0.11 Score=61.16 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=53.2
Q ss_pred HHHHHHHhcccccCC--------------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhh-------------
Q 006934 128 GAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR------------- 180 (625)
Q Consensus 128 ~AIaELIdNA~DA~A--------------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~------------- 180 (625)
.+|..||.||+|++- ..|.|.... .++.-.|.|.|||.||+++.+.+
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~------~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~l 461 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH------QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENM 461 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccC
Confidence 345689999999862 235565542 33455789999999999987653
Q ss_pred --------hhhcccCCCCCCCCCcccccCceeee---eccccCCeEEEEEEe
Q 006934 181 --------MTYFGHKQPDADDPNRIGRFGVGFKT---GAMRLGKDALVLTQT 221 (625)
Q Consensus 181 --------~l~fG~s~k~~~~~~~IG~fGvGfKs---A~~~lg~~v~V~Sk~ 221 (625)
.|.-|++.+.. ...+...|+|+.. ..-.++..+.|.|..
T Consensus 462 s~~e~~~lIF~pgfst~~~--~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~ 511 (670)
T PRK10547 462 SDEEVGMLIFAPGFSTAEQ--VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ 511 (670)
T ss_pred CHHHHHHHhhcCCcccccc--cccCCCCchhHHHHHHHHHHcCCEEEEEecC
Confidence 23334444321 1223446888742 223567777777754
No 73
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=94.05 E-value=0.08 Score=50.91 Aligned_cols=85 Identities=18% Similarity=0.080 Sum_probs=53.6
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccc
Q 006934 125 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 199 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA~A-----t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~ 199 (625)
.+--|+.|++.||+..+- ..|.|.+.. ..+.-.+.|.|+|.||+++.+...+........ .+....|
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~-~~~~~~~- 113 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHI------YEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEP-IDDLREG- 113 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------eCCEEEEEEEEcccccCchhhccccCCCCCCCC-cccCCCC-
Confidence 356789999999998752 356666653 344677899999999998877654432111111 0111223
Q ss_pred cCceeeeeccccCCeEEEEE
Q 006934 200 FGVGFKTGAMRLGKDALVLT 219 (625)
Q Consensus 200 fGvGfKsA~~~lg~~v~V~S 219 (625)
|.|+...- ++.+++.+.+
T Consensus 114 -G~GL~Li~-~L~D~v~~~~ 131 (159)
T TIGR01924 114 -GLGLFLIE-TLMDEVEVYE 131 (159)
T ss_pred -ccCHHHHH-HhccEEEEEe
Confidence 78875433 4778777765
No 74
>PRK03660 anti-sigma F factor; Provisional
Probab=93.92 E-value=0.21 Score=46.36 Aligned_cols=80 Identities=19% Similarity=0.191 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCccccc
Q 006934 126 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 200 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A-----t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~f 200 (625)
+..++.|++.||+..+. ..|.|.+.. ..+.-.|.|.|+|.||+. +...+.-..+.+.. -+.-
T Consensus 40 l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~------~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~-----~~~~ 106 (146)
T PRK03660 40 IKTAVSEAVTNAIIHGYENNPDGVVYIEVEI------EEEELEITVRDEGKGIED--IEEAMQPLYTTKPE-----LERS 106 (146)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------CCCEEEEEEEEccCCCCh--HHHhhCCCcccCCC-----CCCc
Confidence 56789999999996542 346666542 234567899999999975 33333222211110 1234
Q ss_pred CceeeeeccccCCeEEEEE
Q 006934 201 GVGFKTGAMRLGKDALVLT 219 (625)
Q Consensus 201 GvGfKsA~~~lg~~v~V~S 219 (625)
|+|+..+ -++++.+.+.+
T Consensus 107 GlGL~i~-~~~~~~i~~~~ 124 (146)
T PRK03660 107 GMGFTVM-ESFMDEVEVES 124 (146)
T ss_pred cccHHHH-HHhCCeEEEEe
Confidence 8887432 23555555544
No 75
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=93.80 E-value=0.11 Score=63.30 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A-t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~fGvG 203 (625)
+..+|..||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+.|. |-..... .....+..|+|
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~------~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~--~~~~~~GtGLG 634 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRV------DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTG--VQRNFQGTGLG 634 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEE------eCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCC--CCCCCCCeehh
Confidence 55789999999999853 346666553 23456789999999999999998875 3221111 11122346888
Q ss_pred eeeec---cccCCeEEEEEEeC
Q 006934 204 FKTGA---MRLGKDALVLTQTA 222 (625)
Q Consensus 204 fKsA~---~~lg~~v~V~Sk~~ 222 (625)
+..+. -..|.++.|.|...
T Consensus 635 L~I~k~lv~~~gG~I~v~S~~g 656 (924)
T PRK10841 635 LAICEKLINMMDGDISVDSEPG 656 (924)
T ss_pred HHHHHHHHHHCCCEEEEEEcCC
Confidence 75321 24678888887643
No 76
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=93.77 E-value=0.13 Score=55.82 Aligned_cols=74 Identities=23% Similarity=0.462 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcccccC----------CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCC--CC
Q 006934 126 IFGAIAELVDNSRDAK----------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA--DD 193 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~----------At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~--~~ 193 (625)
+.-.+-||..||..|- -+.|.|.+.. ++....|.|.|-|+|++++++..++.|++|.... .+
T Consensus 261 L~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d 334 (414)
T KOG0787|consen 261 LYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSD 334 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCC
Confidence 4667899999999992 2347776653 4557788999999999999999999998876432 11
Q ss_pred ---CCcccccCceee
Q 006934 194 ---PNRIGRFGVGFK 205 (625)
Q Consensus 194 ---~~~IG~fGvGfK 205 (625)
...+--||-|+-
T Consensus 335 ~~~~~plaGfG~GLP 349 (414)
T KOG0787|consen 335 NNRTAPLAGFGFGLP 349 (414)
T ss_pred CCCcCcccccccCCc
Confidence 233444666653
No 77
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=93.29 E-value=0.19 Score=60.32 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A-t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~fGvG 203 (625)
+..+|..||+||+.+.. ..|.|.+..... ......-.|.|.|||.||+++++.+.|. |-...+. .....|..|+|
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~~-~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~~~~g~GLG 485 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRAL-SNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS--ISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEec-CCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC--CCCCCCCcchh
Confidence 55779999999999854 345555542100 0011124589999999999999998874 4322211 11233567888
Q ss_pred eeee---ccccCCeEEEEEEeC
Q 006934 204 FKTG---AMRLGKDALVLTQTA 222 (625)
Q Consensus 204 fKsA---~~~lg~~v~V~Sk~~ 222 (625)
+..+ .-..|.++.|.|...
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~ 507 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPN 507 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCC
Confidence 7532 124678888888654
No 78
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=92.92 E-value=0.16 Score=57.28 Aligned_cols=75 Identities=19% Similarity=0.408 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcccc-cCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCcee
Q 006934 126 IFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 204 (625)
Q Consensus 126 ~f~AIaELIdNA~D-A~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGf 204 (625)
...-++|-+.||+. |.|++|+|.+.. ..+...++|+|||+|++.. ....|.||+-.
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~------~~g~~~~~VeDnG~Gi~~~-----------------~e~~gHyGL~I 538 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQ------NDGQVTLTVEDNGVGIDEA-----------------AEPSGHYGLNI 538 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEe------cCCeEEEEEeeCCcCCCCc-----------------cCCCCCcchHH
Confidence 34569999999997 479999999874 3478899999999999864 23457887664
Q ss_pred ee-eccccCCeEEEEEEeCC
Q 006934 205 KT-GAMRLGKDALVLTQTAD 223 (625)
Q Consensus 205 Ks-A~~~lg~~v~V~Sk~~~ 223 (625)
-. =+-+++..+.|..+..+
T Consensus 539 M~ERA~~L~~~L~i~~~~~g 558 (574)
T COG3850 539 MRERAQRLGGQLRIRRREGG 558 (574)
T ss_pred HHHHHHHhcCeEEEeecCCC
Confidence 10 01256777777766544
No 79
>PRK13557 histidine kinase; Provisional
Probab=92.76 E-value=0.26 Score=54.79 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcccccCCCc--cEEEEEeceecc---------CCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCC
Q 006934 126 IFGAIAELVDNSRDAKATK--LEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 194 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At~--v~I~i~~~~~~~---------~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~ 194 (625)
+..++..|+.||+++.... +.|......... ..++.-.|.|.|||.||+++.+...|...++.+.
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 4567899999999985433 444332110000 0122346899999999999999888764443332
Q ss_pred CcccccCceeeee---ccccCCeEEEEEEe
Q 006934 195 NRIGRFGVGFKTG---AMRLGKDALVLTQT 221 (625)
Q Consensus 195 ~~IG~fGvGfKsA---~~~lg~~v~V~Sk~ 221 (625)
..+..|+|+..+ .-.+|..+.|.|..
T Consensus 354 -~~~g~GlGL~i~~~~v~~~gG~i~~~s~~ 382 (540)
T PRK13557 354 -EGKGTGLGLSMVYGFAKQSGGAVRIYSEV 382 (540)
T ss_pred -CCCCCCccHHHHHHHHHHCCCEEEEEecC
Confidence 113457786422 23467888887754
No 80
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=92.74 E-value=0.23 Score=60.44 Aligned_cols=91 Identities=15% Similarity=0.268 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A-t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~fGvG 203 (625)
+..++..||+||+.+.. ..|.|.+... ....+.-.|.|.|+|.||+++++.+.|. |-. .+.. ...-+.-|+|
T Consensus 566 L~QVL~NLL~NAik~t~~G~I~I~v~~~---~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t-~~~~--~~~~~GtGLG 639 (894)
T PRK10618 566 LRKILLLLLNYAITTTAYGKITLEVDQD---ESSPDRLTIRILDTGAGVSIKELDNLHFPFLN-QTQG--DRYGKASGLT 639 (894)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEc---cCCCcEEEEEEEECCCCCCHHHHHHhcCcccc-CCCC--CCCCCCcChh
Confidence 45678999999999854 3466665431 0012345789999999999999999875 422 2211 1111235777
Q ss_pred eeee---ccccCCeEEEEEEeC
Q 006934 204 FKTG---AMRLGKDALVLTQTA 222 (625)
Q Consensus 204 fKsA---~~~lg~~v~V~Sk~~ 222 (625)
+..+ .-..|.++.|.|...
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g 661 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREG 661 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCC
Confidence 6322 124688888888654
No 81
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.08 E-value=0.17 Score=54.63 Aligned_cols=71 Identities=24% Similarity=0.376 Sum_probs=52.1
Q ss_pred CHHHHHHHHHhccccc-CCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 125 WIFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA-~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
-+|-++.|.|.|++.. +|+.+.|.+.. ..+.-.|.|.|||.|.+.+... | |.|
T Consensus 279 ~l~rivQEaltN~~rHa~A~~v~V~l~~------~~~~l~l~V~DnG~Gf~~~~~~------------------~--~~G 332 (365)
T COG4585 279 ALFRIVQEALTNAIRHAQATEVRVTLER------TDDELRLEVIDNGVGFDPDKEG------------------G--GFG 332 (365)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEEEE------cCCEEEEEEEECCcCCCccccC------------------C--Ccc
Confidence 3788899999999986 68999999885 3456899999999998875521 2 344
Q ss_pred eee---eccccCCeEEEEEEe
Q 006934 204 FKT---GAMRLGKDALVLTQT 221 (625)
Q Consensus 204 fKs---A~~~lg~~v~V~Sk~ 221 (625)
+++ =...+|..+.|.|..
T Consensus 333 L~~mreRv~~lgG~l~i~S~~ 353 (365)
T COG4585 333 LLGMRERVEALGGTLTIDSAP 353 (365)
T ss_pred hhhHHHHHHHcCCEEEEEecC
Confidence 432 122478888888865
No 82
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=91.84 E-value=0.32 Score=60.47 Aligned_cols=93 Identities=11% Similarity=0.176 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcccccCCC-ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCcee
Q 006934 126 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 204 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At-~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGf 204 (625)
+..+|..||+||+++... .+.|.+..... ......-.|.|.|||.||+++++.++|...+..+. ....+..|+|+
T Consensus 829 l~qvl~NLl~NAik~~~~g~i~i~~~~~~~-~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~---~~~~~G~GLGL 904 (1197)
T PRK09959 829 FKQVLSNLLSNALKFTTEGAVKITTSLGHI-DDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA---GRQQTGSGLGL 904 (1197)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEeee-cCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc---CCCCCCcCchH
Confidence 567899999999998643 34554432100 00111235789999999999999988753232221 11223468887
Q ss_pred eeec---cccCCeEEEEEEeC
Q 006934 205 KTGA---MRLGKDALVLTQTA 222 (625)
Q Consensus 205 KsA~---~~lg~~v~V~Sk~~ 222 (625)
..+- -..|.++.|.|...
T Consensus 905 ~i~~~iv~~~gG~i~v~s~~~ 925 (1197)
T PRK09959 905 MICKELIKNMQGDLSLESHPG 925 (1197)
T ss_pred HHHHHHHHHcCCEEEEEeCCC
Confidence 5321 23677787777543
No 83
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=91.44 E-value=0.21 Score=56.56 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 126 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~-At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
+..++.|+++||+.+. +..|.|.+.. .++.-.|+|.|||.||+++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~------~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQ------QDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCEEEEEEEECCCCCCcC
Confidence 5677899999999864 4667777653 3345679999999999865
No 84
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.39 E-value=0.32 Score=57.50 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=43.2
Q ss_pred HHHHHHHHhcccccCCCc--cEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCC
Q 006934 127 FGAIAELVDNSRDAKATK--LEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP 189 (625)
Q Consensus 127 f~AIaELIdNA~DA~At~--v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k 189 (625)
..+|.-|||||.....+. |.|.... ..+.-.|.|.|+|.||+.+++.+.|. |-...+
T Consensus 777 eQVLiNLleNA~Kyap~~s~I~I~~~~------~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~ 836 (890)
T COG2205 777 EQVLINLLENALKYAPPGSEIRINAGV------ERENVVFSVIDEGPGIPEGELERIFDKFYRGNK 836 (890)
T ss_pred HHHHHHHHHHHHhhCCCCCeEEEEEEE------ecceEEEEEEeCCCCCChhHHHHhhhhhhcCCC
Confidence 567899999999986554 4554442 34567899999999999999999984 655444
No 85
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=91.14 E-value=0.22 Score=57.03 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=36.0
Q ss_pred HHHHHHHHHhccccc-CCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhh
Q 006934 126 IFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 177 (625)
Q Consensus 126 ~f~AIaELIdNA~DA-~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~ee 177 (625)
++.++.|+|+||+.+ .++.|.|.+.. .++.-.|.|.|||.||+++.
T Consensus 470 l~~il~ell~NA~kha~a~~i~V~~~~------~~~~~~l~V~D~G~Gi~~~~ 516 (569)
T PRK10600 470 LLQIAREALSNALKHAQASEVVVTVAQ------NQNQVKLSVQDNGCGVPENA 516 (569)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCccc
Confidence 677899999999986 45677777753 33456799999999998753
No 86
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=91.13 E-value=0.5 Score=45.12 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=53.7
Q ss_pred cCHHHHHHHHHhcccccCC------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcc
Q 006934 124 GWIFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRI 197 (625)
Q Consensus 124 ~~~f~AIaELIdNA~DA~A------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~I 197 (625)
..+-.|+.|++.|++.++- ..|.|.+.. ..+.-.++|.|.|.|+ +++...+.-++.... ....
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~------~~~~~~i~i~D~G~~~--~~~~~~~~~~~~~~~---~~~~ 107 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSL------DDGKLEIRIWDQGPGI--EDLEESLGPGDTTAE---GLQE 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEE------cCCeEEEEEEeCCCCC--CCHHHhcCCCCCCCc---cccc
Confidence 3467899999999998742 345555543 4556889999999554 455555554432221 1223
Q ss_pred cccCceeeeeccccCCeEEEEEEeC
Q 006934 198 GRFGVGFKTGAMRLGKDALVLTQTA 222 (625)
Q Consensus 198 G~fGvGfKsA~~~lg~~v~V~Sk~~ 222 (625)
| |+|| ....++.+++.+.....
T Consensus 108 ~--G~Gl-~l~~~~~D~~~~~~~~~ 129 (146)
T COG2172 108 G--GLGL-FLAKRLMDEFSYERSED 129 (146)
T ss_pred c--cccH-HHHhhhheeEEEEeccC
Confidence 3 7777 44456778888875443
No 87
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.52 E-value=0.32 Score=49.55 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=32.6
Q ss_pred HHHHHHHhcccccCCC-----ccEEEEEeceeccCCCC-CCEEEEEeCCCCCChh
Q 006934 128 GAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKD-IPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 128 ~AIaELIdNA~DA~At-----~v~I~i~~~~~~~~~~~-~~~L~I~DNG~GMt~e 176 (625)
-++.||+.||+..++. +|.|.+... ..+ ...+.|.|||.|++.+
T Consensus 125 liv~EL~tNa~Khaf~~~~~G~I~I~~~~~-----~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 125 LIVHELVTNALKHAFLSRPGGEIRITLSRE-----GDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEEEEc-----CCCCeEEEEEEECCCCCCCC
Confidence 4589999999998753 577776641 222 3689999999999763
No 88
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=89.07 E-value=0.69 Score=54.87 Aligned_cols=87 Identities=21% Similarity=0.320 Sum_probs=57.3
Q ss_pred HHHHHHHhcccccCC--------------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhh-hhh---------
Q 006934 128 GAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR-MTY--------- 183 (625)
Q Consensus 128 ~AIaELIdNA~DA~A--------------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~-~l~--------- 183 (625)
..|..||-||+|.|- -.|.|.-.. .++.-.|.|.|||.||+++.+.+ ++.
T Consensus 435 dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~------~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a 508 (716)
T COG0643 435 DPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYH------EGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEA 508 (716)
T ss_pred ccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEc------CCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHh
Confidence 447889999999962 234444432 45566789999999999998764 332
Q ss_pred --------------cccCCCCCCCCCcccccCcee---eeeccccCCeEEEEEEeC
Q 006934 184 --------------FGHKQPDADDPNRIGRFGVGF---KTGAMRLGKDALVLTQTA 222 (625)
Q Consensus 184 --------------fG~s~k~~~~~~~IG~fGvGf---KsA~~~lg~~v~V~Sk~~ 222 (625)
.|+|.+.. -..+.--|||| |+..-++|..+.|.|+..
T Consensus 509 ~~lSd~Ei~~LIF~PGFSTa~~--VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G 562 (716)
T COG0643 509 ETLSDEEILNLIFAPGFSTAEQ--VTDVSGRGVGMDVVKTNIEQLGGSISVSSEPG 562 (716)
T ss_pred ccCCHHHHHHHHhcCCCCcchh--hhcccCCccCHHHHHHHHHHcCCEEEEEecCC
Confidence 24554421 23344448997 455567888888888654
No 89
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=88.86 E-value=0.49 Score=53.02 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcccccCC----CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhh
Q 006934 126 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 182 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A----t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l 182 (625)
|--.|-=||+||+-||. ....|.+.... ..+.-.+.|.|||.||+++......
T Consensus 351 p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~----~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 351 PKLVLQPLVENAIEHGIEPKRPGGSIAISAKK----QDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred chHHHhHHHHHHHHHhcccCCCCCEEEEEEEE----cCCEEEEEEeeCCCCCChhHHHHHH
Confidence 55668889999999973 33455554311 2456678999999999998876654
No 90
>PRK13560 hypothetical protein; Provisional
Probab=87.77 E-value=0.5 Score=55.34 Aligned_cols=43 Identities=26% Similarity=0.458 Sum_probs=30.7
Q ss_pred HHHHHHhcccccCC-----CccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 129 AIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 129 AIaELIdNA~DA~A-----t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
.|.+||.||+++.. ..|.|.+.. ...+.-.|+|.|||.||+++
T Consensus 715 il~NLl~NAik~~~~~~~~~~i~i~~~~-----~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFPDGAAGNIKVEIRE-----QGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhccCCCCceEEEEEEE-----cCCCEEEEEEEeCCCcCCcc
Confidence 67899999998732 345555542 12344678999999999985
No 91
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=86.37 E-value=0.81 Score=52.65 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh
Q 006934 126 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 183 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A---------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~ 183 (625)
+-.|+.-||.||.+|.+ ..+.++++. .++.-.+.|.|||.|.+.+.+.+++-
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~------~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDD------ADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEec------CCCeEEEEEecCCCCCChHHhhhhcc
Confidence 34678999999999843 124444442 35567889999999999999999874
No 92
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=85.17 E-value=1.5 Score=49.01 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcccccCC---CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCC
Q 006934 126 IFGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 189 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A---t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k 189 (625)
+...+--|+-||.||.. +.|+|.... ...+..+|-|.|||-|-+.+-+.+.+..-.+.|
T Consensus 565 ieQVlvNl~~NaldA~~h~~p~i~~~~~~-----~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK 626 (673)
T COG4192 565 IEQVLVNLIVNALDASTHFAPWIKLIALG-----TEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSK 626 (673)
T ss_pred HHHHHHHHHHHHHhhhccCCceEEEEeec-----CcccceEEEEecCCCCCchhHHHHhcCCccccc
Confidence 67778999999999964 445555442 135577899999999999988888886434434
No 93
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=83.93 E-value=1.3 Score=48.01 Aligned_cols=71 Identities=17% Similarity=0.368 Sum_probs=50.1
Q ss_pred HHHHHHHHhcccccCC--CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCCCCCCCCcccccCce
Q 006934 127 FGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 127 f~AIaELIdNA~DA~A--t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG~fGvG 203 (625)
-..|--+|.||+.... .+|.|.+.. ....-.++|.|.|.|++++++.+.|. |-.-.+. .....|--|+|
T Consensus 344 tQVldNii~NA~KYsP~Gg~Itv~~~~------~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA--RsR~~gGTGLG 415 (459)
T COG5002 344 TQVLDNIISNALKYSPDGGRITVSVKQ------RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA--RSRKMGGTGLG 415 (459)
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEEEee------eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh--hhhcCCCCchh
Confidence 4557788999998753 567766653 23356789999999999999999884 5444332 34456766788
Q ss_pred ee
Q 006934 204 FK 205 (625)
Q Consensus 204 fK 205 (625)
+.
T Consensus 416 La 417 (459)
T COG5002 416 LA 417 (459)
T ss_pred HH
Confidence 74
No 94
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=80.43 E-value=2.1 Score=48.37 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 126 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A-t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
+...+.+|+.||+.+.. ..+.|.+.. ...+.-.|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~-----~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVT-----NPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEE-----cCCCEEEEEEEECCcCcCCC
Confidence 45678999999998643 456666642 12344578999999999874
No 95
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK13559 hypothetical protein; Provisional
Probab=79.87 E-value=1.9 Score=45.73 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 126 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A-----t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
+..++.|||.||+.+++ ..|.|.+... ...+...|.+.|||.||+.+
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~----~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPS----PEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEec----CCCCeEEEEEECCCCCCCCC
Confidence 45678999999999853 3566665211 13445688899999998654
No 97
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=76.92 E-value=3.2 Score=48.18 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=48.3
Q ss_pred CceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCC---CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhh
Q 006934 104 EKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR 180 (625)
Q Consensus 104 ~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~A---t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~ 180 (625)
....+++.| |..+...-+ -+-....-||.||+..+. ..|.|..+. ....-++.|.|||.|++++-+.+
T Consensus 618 tgaei~i~~--lp~v~~d~~-~l~qv~~NLi~Naik~~~~e~~~i~I~~~r------~ed~~t~sV~dng~Gi~~a~~~r 688 (750)
T COG4251 618 TGAEIRIAP--LPVVAADAT-QLGQVFQNLIANAIKFGGPENPDIEISAER------QEDEWTFSVRDNGIGIDPAYFER 688 (750)
T ss_pred ccceEEecc--cceeecCHH-HHHHHHHHHHhhheecCCCCCCceEEeeec------cCCceEEEecCCCCCcCHHHHHH
Confidence 334444555 444433221 234557889999998865 456666553 45578999999999999999999
Q ss_pred hhh
Q 006934 181 MTY 183 (625)
Q Consensus 181 ~l~ 183 (625)
.|.
T Consensus 689 iF~ 691 (750)
T COG4251 689 IFV 691 (750)
T ss_pred HHH
Confidence 875
No 98
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=75.04 E-value=4.1 Score=44.00 Aligned_cols=75 Identities=20% Similarity=0.387 Sum_probs=49.1
Q ss_pred HHHHHHHHhccc-ccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCceee
Q 006934 127 FGAIAELVDNSR-DAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 205 (625)
Q Consensus 127 f~AIaELIdNA~-DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGfK 205 (625)
|-.+-|-+.|-- -|+|++|.|.+.. ..+.-.+.|.|||.|++..++.+-+ .|+|+.
T Consensus 361 yRv~QEaltNIErHa~Atrv~ill~~------~~d~vql~vrDnG~GF~~~~~~~~~-----------------~GiGLR 417 (459)
T COG4564 361 YRVVQEALTNIERHAGATRVTILLQQ------MGDMVQLMVRDNGVGFSVKEALQKR-----------------HGIGLR 417 (459)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEecc------CCcceEEEEecCCCCccchhhccCc-----------------cccccc
Confidence 333455555543 3589999999873 4567789999999999887643321 377875
Q ss_pred ee--c-cccCCeEEEEEEeCCC
Q 006934 206 TG--A-MRLGKDALVLTQTADS 224 (625)
Q Consensus 206 sA--~-~~lg~~v~V~Sk~~~~ 224 (625)
-- - -.+|..++|.|-..|+
T Consensus 418 NMrERma~~GG~~~v~s~p~GT 439 (459)
T COG4564 418 NMRERMAHFGGELEVESSPQGT 439 (459)
T ss_pred cHHHHHHHhCceEEEEecCCCc
Confidence 21 0 1268888888755544
No 99
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=67.17 E-value=9.6 Score=40.96 Aligned_cols=64 Identities=19% Similarity=0.123 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcccccCCC----ccEEEEEecee--ccCC----CCCCEEEEEeCCCCCChhhHhhhhhcccCCC
Q 006934 126 IFGAIAELVDNSRDAKAT----KLEISIESIYF--KKAG----KDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 189 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At----~v~I~i~~~~~--~~~~----~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k 189 (625)
+..|+--||.||..|.+. .=.|.+.+..- -+.. .-.-.|.|.|||.|++.+-....|...-|.+
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r 315 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGR 315 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccC
Confidence 678899999999999762 12233322100 0001 1133568999999999877666765433434
No 100
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=63.88 E-value=8.6 Score=42.11 Aligned_cols=45 Identities=29% Similarity=0.429 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcccc-cCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 126 IFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 126 ~f~AIaELIdNA~D-A~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
.+-..-|++.|-.. |.|+.|+|.+-. ++..-.+.|+|||.|++..
T Consensus 411 LyRl~QE~LNNI~KHA~AS~V~i~l~~------~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 411 LYRLCQELLNNICKHADASAVTIQLWQ------QDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred HHHHHHHHHHHHHhccccceEEEEEee------CCcEEEEEEecCCcCCCCC
Confidence 66778899999875 689999998763 3445789999999998763
No 101
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=62.48 E-value=18 Score=43.40 Aligned_cols=86 Identities=21% Similarity=0.327 Sum_probs=51.4
Q ss_pred CHHHHHHHHHhcccc-c---CCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhh--h----hhccc---CCCCC
Q 006934 125 WIFGAIAELVDNSRD-A---KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M----TYFGH---KQPDA 191 (625)
Q Consensus 125 ~~f~AIaELIdNA~D-A---~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~--~----l~fG~---s~k~~ 191 (625)
..+..+-|++.||.| . .-..+.+.|. .....+.|.+||.|++-+.... . +-||. +.+-.
T Consensus 53 Gl~ki~dEilvNaadk~rd~~m~~i~v~i~--------~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltssny~ 124 (842)
T KOG0355|consen 53 GLYKIFDEILVNAADKQRDPKMNTIKVTID--------KEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNYD 124 (842)
T ss_pred cHHHHHHHHhhcccccccCCCcceeEEEEc--------cCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhccccC
Confidence 456668999999999 1 2244566554 4578999999999998766432 1 11221 22111
Q ss_pred --CCCCcccccCceeeeeccccCCeEEEEE
Q 006934 192 --DDPNRIGRFGVGFKTGAMRLGKDALVLT 219 (625)
Q Consensus 192 --~~~~~IG~fGvGfKsA~~~lg~~v~V~S 219 (625)
...-.-|+.|.|-|.+.. ++.+.+|.|
T Consensus 125 d~ekK~tggrngygakLcni-Fs~~f~~Et 153 (842)
T KOG0355|consen 125 DDEKKVTGGRNGYGAKLCNI-FSTEFTVET 153 (842)
T ss_pred CCccccccCCCccceeeeee-ccccceeee
Confidence 112344666777765544 455555555
No 102
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=54.24 E-value=2.5 Score=32.44 Aligned_cols=34 Identities=24% Similarity=0.742 Sum_probs=22.5
Q ss_pred CCCCceecCcchhhhhccCC-CCC--C-CCCCCCcccc
Q 006934 512 KPDQEWVQCNKCRKWRMLDP-GFD--T-KSLPVEWFCY 545 (625)
Q Consensus 512 ~~~~~WvQCd~C~KWR~lp~-~~~--~-~~~p~~W~C~ 545 (625)
.+...|||||.|..|-...= +.. . ......|+|.
T Consensus 9 ~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~ 46 (51)
T PF00628_consen 9 DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCP 46 (51)
T ss_dssp CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSH
T ss_pred CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECc
Confidence 45678999999999987652 221 1 2233489984
No 103
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=47.60 E-value=26 Score=39.82 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=33.0
Q ss_pred HHHHHHHhcccccCC------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 128 GAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 128 ~AIaELIdNA~DA~A------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
-.|-=||.||+..+- -.|.|.+.. .+..-.+.|+|||.|+.++
T Consensus 459 filQPLVENAIKHG~~~~~~~g~V~I~V~~------~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 459 FILQPLVENAIKHGISQLKDTGRVTISVEK------EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhhhHHHHHHHHhcccchhcCCceEEEEEE------eCCeEEEEEecCCCCcCCC
Confidence 347889999998863 357777664 3445789999999999986
No 104
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=33.78 E-value=48 Score=37.72 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=46.3
Q ss_pred cCHHHHHHHHHhcccccC-----CCccEEEEEeceeccCCCCCCEEEEEeCCC---CCChhhHhhhhhcccCCCC-----
Q 006934 124 GWIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGH---GMTHQDVVRMTYFGHKQPD----- 190 (625)
Q Consensus 124 ~~~f~AIaELIdNA~DA~-----At~v~I~i~~~~~~~~~~~~~~L~I~DNG~---GMt~eel~~~l~fG~s~k~----- 190 (625)
..|..|++|+|-||+-.. ...|+|++. ...|.|.-.|. ||+++++.+- .|..+
T Consensus 269 dyP~~alREai~NAv~HRDYs~~~~~v~I~iy----------dDRieI~NPGgl~~gi~~~~l~~~----~s~~RNp~LA 334 (467)
T COG2865 269 DYPLEALREAIINAVIHRDYSIRGRNVHIEIY----------DDRIEITNPGGLPPGITPEDLLKG----RSKSRNPVLA 334 (467)
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCceEEEEE----------CCeEEEECCCCCCCCCChhHcccC----CCcccCHHHH
Confidence 347899999999999542 336777765 46899998776 7777775542 22211
Q ss_pred --CCCCCcccccCceee
Q 006934 191 --ADDPNRIGRFGVGFK 205 (625)
Q Consensus 191 --~~~~~~IG~fGvGfK 205 (625)
..+...|-++|.|+.
T Consensus 335 ~~l~~~~liE~~GSGi~ 351 (467)
T COG2865 335 KVLRDMGLIEERGSGIR 351 (467)
T ss_pred HHHHHhhhHHHhCccHH
Confidence 013466778999975
No 105
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=26.69 E-value=27 Score=36.88 Aligned_cols=29 Identities=21% Similarity=0.795 Sum_probs=22.0
Q ss_pred ceecCcc--hh-hhhccCC-CCCCCCCCCCcccc
Q 006934 516 EWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 545 (625)
Q Consensus 516 ~WvQCd~--C~-KWR~lp~-~~~~~~~p~~W~C~ 545 (625)
.-|.||. |- .|=.++= |+. ..-.++|||.
T Consensus 231 ~Mi~CDn~~C~~eWFH~~CVGL~-~~PkgkWyC~ 263 (274)
T KOG1973|consen 231 KMIGCDNPGCPIEWFHFTCVGLK-TKPKGKWYCP 263 (274)
T ss_pred cccccCCCCCCcceEEEeccccc-cCCCCcccch
Confidence 6699986 99 9999983 443 3456789996
No 106
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=24.27 E-value=29 Score=28.96 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=13.8
Q ss_pred CCCCCceecCcchhhhhccCCCC
Q 006934 511 YKPDQEWVQCNKCRKWRMLDPGF 533 (625)
Q Consensus 511 ~~~~~~WvQCd~C~KWR~lp~~~ 533 (625)
|..-..+|||+.|..|..+.+.+
T Consensus 23 Y~~GvViv~C~gC~~~HlIaDnL 45 (66)
T PF05180_consen 23 YHKGVVIVQCPGCKNRHLIADNL 45 (66)
T ss_dssp HHTSEEEEE-TTS--EEES--SS
T ss_pred HhCCeEEEECCCCcceeeehhhh
Confidence 33445789999999999998875
No 107
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=20.29 E-value=1.2e+02 Score=27.50 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=31.9
Q ss_pred CcEEEEEeccchhhhhhhh-hhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcccccCCc
Q 006934 252 GQFMELDTVVQSEATAKYN-LKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSN 312 (625)
Q Consensus 252 Gt~i~l~~~~~~e~~~~~~-l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r~~~~ 312 (625)
...++++++++.|+.|... ++.+ +..++.+.+...|--+.-|||++.+++
T Consensus 24 ~~~LTLdlDPdNEF~W~~~~l~kV-----------y~~F~eLVe~~~G~~LtdYnLRrIGSd 74 (108)
T PF10664_consen 24 DDKLTLDLDPDNEFNWNEEALQKV-----------YRKFDELVESYAGEDLTDYNLRRIGSD 74 (108)
T ss_pred CCeeEEecCCCcccccCHHHHHHH-----------HHHHHHHHHhhcCCCchhhhHHHhccH
Confidence 3677888888888876533 2222 222333333467889999999998653
Done!