Query 006934
Match_columns 625
No_of_seqs 401 out of 2201
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:49:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ied_A Heat shock protein; HSP 99.9 3.2E-25 1.1E-29 224.0 3.5 176 89-286 21-268 (272)
2 3nmq_A Heat shock protein HSP 99.9 5.6E-25 1.9E-29 221.7 3.4 174 92-286 16-218 (239)
3 3peh_A Endoplasmin homolog; st 99.9 1.7E-24 5.8E-29 222.5 5.2 175 91-286 22-227 (281)
4 1qy5_A Endoplasmin; GRP94, NEC 99.9 2E-22 6.8E-27 207.0 5.2 172 93-286 6-212 (269)
5 3o0i_A HSP90AA1 protein; HSP90 99.8 1.1E-22 3.7E-27 207.0 2.1 176 90-286 35-239 (256)
6 2gqp_A Endoplasmin; GRP94, HSP 99.8 8.8E-22 3E-26 198.9 7.0 156 119-286 26-216 (236)
7 3t0h_A Heat shock protein HSP 99.8 9.6E-22 3.3E-26 197.5 6.1 173 93-286 10-211 (228)
8 2cg9_A ATP-dependent molecular 99.8 1.5E-21 5.2E-26 221.6 7.5 173 93-286 4-206 (677)
9 1yc1_A HSP 86, heat shock prot 99.8 4.1E-21 1.4E-25 196.9 7.5 163 113-286 56-247 (264)
10 1y4s_A Chaperone protein HTPG; 99.8 3.4E-21 1.2E-25 215.3 7.3 174 93-285 5-208 (559)
11 2wer_A ATP-dependent molecular 99.8 6.4E-21 2.2E-25 190.5 8.2 161 114-285 15-205 (220)
12 2o1u_A Endoplasmin; GRP94, HSP 99.8 5.6E-21 1.9E-25 216.8 7.2 171 93-285 23-228 (666)
13 2ioq_A Chaperone protein HTPG; 99.8 5.3E-21 1.8E-25 216.2 5.6 174 93-285 5-208 (624)
14 2ior_A Chaperone protein HTPG; 99.8 2.4E-20 8.4E-25 188.2 6.4 162 115-285 37-228 (235)
15 2e61_A Zinc finger CW-type PWW 99.7 3.6E-17 1.2E-21 134.2 5.0 55 508-562 9-67 (69)
16 2l7p_A Histone-lysine N-methyl 99.6 1.2E-16 4E-21 139.7 -0.1 59 509-567 20-81 (100)
17 1b63_A MUTL; DNA mismatch repa 99.5 1E-13 3.5E-18 146.5 13.2 140 105-258 3-150 (333)
18 3h4l_A DNA mismatch repair pro 99.4 1.6E-13 5.6E-18 146.6 10.4 139 107-258 6-150 (367)
19 1h7s_A PMS1 protein homolog 2; 99.4 1.1E-12 3.7E-17 140.3 10.3 141 106-258 14-160 (365)
20 3na3_A DNA mismatch repair pro 99.3 1.6E-12 5.4E-17 138.0 10.2 142 104-258 6-154 (348)
21 1ei1_A DNA gyrase B, GYRB; ATP 99.2 3E-10 1E-14 122.5 19.5 308 102-498 12-363 (391)
22 3fv5_A DNA topoisomerase 4 sub 99.2 8.1E-12 2.8E-16 123.1 6.7 172 105-307 2-192 (201)
23 3cwv_A DNA gyrase, B subunit, 99.1 7.8E-10 2.7E-14 118.4 16.2 305 105-498 12-347 (369)
24 4emv_A DNA topoisomerase IV, B 99.1 9.5E-11 3.3E-15 117.4 8.3 179 102-308 19-216 (226)
25 4duh_A DNA gyrase subunit B; s 99.1 1.1E-10 3.9E-15 116.5 8.5 178 102-308 13-210 (220)
26 1kij_A DNA gyrase subunit B; t 99.1 2.4E-09 8.1E-14 115.5 18.4 177 103-307 12-207 (390)
27 1s16_A Topoisomerase IV subuni 99.0 2.8E-10 9.4E-15 122.7 8.9 301 102-498 13-361 (390)
28 3lnu_A Topoisomerase IV subuni 98.9 3.6E-10 1.2E-14 122.0 4.6 175 102-307 32-225 (408)
29 1zxm_A TOPO IIA ATPase, DNA to 98.9 1.6E-09 5.4E-14 117.0 6.7 183 102-306 9-232 (400)
30 1pvg_A DNA topoisomerase II; G 98.7 1.1E-08 3.9E-13 110.9 6.7 181 102-306 20-245 (418)
31 3ttz_A DNA gyrase subunit B; p 98.7 2E-08 6.9E-13 98.7 7.1 163 104-308 12-183 (198)
32 1mu5_A Type II DNA topoisomera 98.4 4.1E-07 1.4E-11 100.2 9.2 96 125-224 32-137 (471)
33 2zbk_B Type 2 DNA topoisomeras 98.4 6.2E-07 2.1E-11 100.1 9.2 96 125-224 31-136 (530)
34 2q2e_B Type 2 DNA topoisomeras 98.3 4.8E-07 1.7E-11 102.6 6.9 131 125-260 37-181 (621)
35 1id0_A PHOQ histidine kinase; 97.7 8.6E-05 2.9E-09 67.1 7.6 85 126-221 45-132 (152)
36 1bxd_A ENVZ(290-450), protein 97.6 0.0001 3.5E-09 67.6 6.7 87 126-221 48-137 (161)
37 4gfh_A DNA topoisomerase 2; to 97.5 6.2E-05 2.1E-09 90.9 4.7 151 100-261 13-203 (1177)
38 2c2a_A Sensor histidine kinase 97.3 0.00022 7.5E-09 70.4 6.4 89 126-221 139-235 (258)
39 1th8_A Anti-sigma F factor; SP 97.3 0.00024 8.1E-09 64.3 5.6 81 126-220 40-125 (145)
40 2q8g_A [pyruvate dehydrogenase 97.3 0.00022 7.7E-09 76.3 5.9 90 126-221 244-350 (407)
41 1ysr_A Sensor-type histidine k 97.3 0.00034 1.1E-08 63.2 6.1 85 126-220 47-135 (150)
42 3a0y_A Sensor protein; ATP-LID 97.2 0.00022 7.7E-09 64.1 4.2 82 126-220 48-135 (152)
43 2e0a_A Pyruvate dehydrogenase 97.2 0.00029 9.9E-09 75.1 5.5 90 126-221 231-337 (394)
44 1gkz_A [3-methyl-2-oxobutanoat 97.1 0.00021 7.3E-09 75.9 3.9 90 126-221 239-360 (388)
45 4ew8_A Sensor protein DIVL; si 97.1 0.00061 2.1E-08 67.3 6.8 83 126-221 156-243 (268)
46 2btz_A Pyruvate dehydrogenase 97.1 0.00027 9.3E-09 75.3 4.6 90 126-221 232-337 (394)
47 3sl2_A Sensor histidine kinase 97.1 0.00045 1.5E-08 64.4 5.5 91 126-221 44-139 (177)
48 1i58_A Chemotaxis protein CHEA 97.1 0.00015 5.1E-09 68.4 2.2 47 126-178 48-108 (189)
49 1y8o_A [pyruvate dehydrogenase 97.1 0.00028 9.4E-09 76.1 4.5 90 126-221 254-361 (419)
50 3jz3_A Sensor protein QSEC; he 97.1 0.00027 9.3E-09 67.4 3.7 82 126-219 118-202 (222)
51 3d36_A Sporulation kinase B; G 97.0 0.00071 2.4E-08 65.4 5.9 84 126-221 124-212 (244)
52 1r62_A Nitrogen regulation pro 96.9 0.0002 6.8E-09 64.9 1.0 89 126-221 49-147 (160)
53 3ehg_A Sensor kinase (YOCF pro 96.8 0.00062 2.1E-08 60.4 3.4 47 126-178 41-88 (128)
54 1b3q_A Protein (chemotaxis pro 96.8 0.001 3.4E-08 70.9 5.5 88 126-221 107-235 (379)
55 3a0r_A Sensor protein; four he 96.7 0.0011 3.7E-08 67.8 5.0 82 126-220 245-332 (349)
56 3zxo_A Redox sensor histidine 96.5 0.0028 9.6E-08 55.5 5.4 69 125-222 43-115 (129)
57 3ehh_A Sensor kinase (YOCF pro 96.2 0.0027 9.4E-08 60.6 3.8 47 126-178 131-178 (218)
58 3zxq_A Hypoxia sensor histidin 96.1 0.0043 1.5E-07 54.1 4.4 45 126-177 40-85 (124)
59 4gut_A Lysine-specific histone 92.4 0.016 5.3E-07 67.6 -1.6 46 515-560 91-146 (776)
60 4fpp_A Phosphotransferase; fou 92.1 0.1 3.4E-06 51.6 4.1 82 126-220 147-235 (247)
61 3o70_A PHD finger protein 13; 91.9 0.063 2.1E-06 43.5 2.0 32 514-545 30-62 (68)
62 3o7a_A PHD finger protein 13 v 91.0 0.065 2.2E-06 40.9 1.1 32 514-545 15-47 (52)
63 1we9_A PHD finger family prote 89.7 0.12 4E-06 41.0 1.5 34 513-546 18-54 (64)
64 2lv9_A Histone-lysine N-methyl 89.0 0.16 5.4E-06 44.0 2.0 33 514-546 39-72 (98)
65 3ke6_A Protein RV1364C/MT1410; 88.6 0.3 1E-05 52.0 4.4 72 125-220 297-373 (399)
66 1wee_A PHD finger family prote 88.6 0.15 5.2E-06 41.4 1.5 31 515-545 29-61 (72)
67 2kgg_A Histone demethylase jar 82.8 0.2 6.9E-06 38.2 -0.5 34 512-545 13-49 (52)
68 1ixm_A SPO0B, protein (sporula 82.7 0.65 2.2E-05 44.9 3.0 48 130-183 110-167 (192)
69 3kqi_A GRC5, PHD finger protei 79.8 0.35 1.2E-05 39.6 -0.1 33 513-545 21-56 (75)
70 1wep_A PHF8; structural genomi 77.8 0.19 6.4E-06 41.7 -2.3 33 513-545 23-58 (79)
71 2rsd_A E3 SUMO-protein ligase 73.5 1.4 4.8E-05 35.3 1.9 32 514-545 21-60 (68)
72 1wew_A DNA-binding family prot 73.4 0.78 2.7E-05 37.8 0.3 33 513-545 26-67 (78)
73 2ri7_A Nucleosome-remodeling f 72.7 0.58 2E-05 44.1 -0.8 34 513-546 19-55 (174)
74 2k16_A Transcription initiatio 70.9 0.84 2.9E-05 37.1 -0.0 32 514-545 30-63 (75)
75 2vpb_A Hpygo1, pygopus homolog 70.7 1.1 3.9E-05 35.7 0.7 19 511-529 18-37 (65)
76 1weu_A Inhibitor of growth fam 60.3 3.3 0.00011 35.4 1.6 30 515-545 47-80 (91)
77 1wen_A Inhibitor of growth fam 55.6 4.7 0.00016 32.7 1.7 30 515-545 27-60 (71)
78 1wem_A Death associated transc 53.8 2.9 0.0001 34.0 0.2 32 514-545 27-65 (76)
79 2g6q_A Inhibitor of growth pro 47.8 4.6 0.00016 31.8 0.4 30 515-545 22-55 (62)
80 3c6w_A P28ING5, inhibitor of g 47.0 4.8 0.00016 31.4 0.4 30 515-545 20-53 (59)
81 3pur_A Lysine-specific demethy 46.4 6.1 0.00021 43.7 1.3 36 511-546 52-90 (528)
82 2jmi_A Protein YNG1, ING1 homo 43.7 9.1 0.00031 32.5 1.7 30 515-545 37-70 (90)
83 3lqh_A Histone-lysine N-methyl 42.3 6.8 0.00023 37.5 0.8 16 515-530 19-34 (183)
84 3kv5_D JMJC domain-containing 41.5 3.1 0.00011 45.7 -1.9 35 512-546 47-84 (488)
85 2xb1_A Pygopus homolog 2, B-ce 39.4 8.1 0.00028 33.6 0.7 19 512-530 14-33 (105)
86 2vnf_A ING 4, P29ING4, inhibit 37.4 8.3 0.00028 30.0 0.4 30 515-545 21-54 (60)
87 1x4i_A Inhibitor of growth pro 29.9 12 0.00042 30.1 0.2 31 514-545 16-50 (70)
88 2ku7_A MLL1 PHD3-CYP33 RRM chi 29.8 11 0.00037 32.9 -0.1 12 517-528 2-13 (140)
No 1
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.90 E-value=3.2e-25 Score=224.02 Aligned_cols=176 Identities=26% Similarity=0.374 Sum_probs=139.2
Q ss_pred cCCCCcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCC--------------------------
Q 006934 89 CSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA-------------------------- 142 (625)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~A-------------------------- 142 (625)
.++.+.++||++....++++ +++|++.+. +| |+|||+||.||..
T Consensus 21 ~~~~e~~~Fqae~~~ll~li------~~slYs~ke--iF--lRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~ 90 (272)
T 3ied_A 21 GSPVEKYNFKAEVNKVMDII------VNSLYTDKD--VF--LRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNE 90 (272)
T ss_dssp TEECEEEECCHHHHHHHHHH------HHCTTCCTT--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred ccccceechHHHHHHHHHHH------HhhcCCCHH--HH--HHHHHHhhHHHHHHHHHhccChhhhhccccccccccccc
Confidence 34567899999999999998 899987763 88 9999999999932
Q ss_pred --------------------------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCC------
Q 006934 143 --------------------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP------ 189 (625)
Q Consensus 143 --------------------------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k------ 189 (625)
..+.|.|.. +.....|+|.|||+||++++|.++|. ++.|.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~I~I~~------Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~ 164 (272)
T 3ied_A 91 TEKEKTENVNESTDKKENVEEEKNDIKKLIIKIKP------DKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQ 164 (272)
T ss_dssp -----------------------CGGGGCCEEEEE------ETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHH
T ss_pred cccccccccccccccccccccccCCCCCcEEEEEE------eCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHH
Confidence 123455543 34567999999999999999998763 444321
Q ss_pred --C-CCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeCcc--------cCCCCcEEEEE
Q 006934 190 --D-ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS--------YYRKGQFMELD 258 (625)
Q Consensus 190 --~-~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~~~--------~~~~Gt~i~l~ 258 (625)
. ..+...|||||||||+|+| +|++|+|+|| . ...++.|.+ .+...|.|.... ...+||+|+||
T Consensus 165 l~~~~~d~~~IGqFGVGFySaFm-VAdkV~V~Sk-~--dd~~~~WeS--~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~ 238 (272)
T 3ied_A 165 IEEGKADSNLIGQFGVGFYSSFL-VSNRVEVYTK-K--EDQIYRWSS--DLKGSFSVNEIKKYDQEYDDIKGSGTKIILH 238 (272)
T ss_dssp HHTTSSCTTCGGGSCCGGGGGGG-TEEEEEEEEE-S--SSCEEEEEE--CSSSEEEEEECTTCTTCC--CCSSEEEEEEE
T ss_pred hhcccccccccCcccceeheeec-cCCEEEEEEc-C--CCceEEEEE--CCCCCEEEEECcccccccCCCCCCCcEEEEE
Confidence 1 1357899999999999877 9999999999 3 346889988 567778775443 34689999999
Q ss_pred eccch-hhhhhhhhhh-hcccCCCchhhHH
Q 006934 259 TVVQS-EATAKYNLKS-IKEFSPFNKYLIG 286 (625)
Q Consensus 259 ~~~~~-e~~~~~~l~~-I~kySpF~s~~I~ 286 (625)
+++++ +++.++.++. |.+||.|..+||.
T Consensus 239 Lked~~e~le~~~ik~likkys~fi~~PI~ 268 (272)
T 3ied_A 239 LKEECDEYLEDYKLKELIKKYSEFIKFPIE 268 (272)
T ss_dssp ECGGGGGGGSHHHHHHHHHHHCTTCCSCEE
T ss_pred ECCChHHhcCHHHHHHHHHHHHhCCCCCeE
Confidence 99887 8899999987 9999999998874
No 2
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.90 E-value=5.6e-25 Score=221.74 Aligned_cols=174 Identities=22% Similarity=0.296 Sum_probs=132.1
Q ss_pred CCcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCCC----------------ccEEEEEeceec
Q 006934 92 PEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFK 155 (625)
Q Consensus 92 ~~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~At----------------~v~I~i~~~~~~ 155 (625)
...++||++....++.+ +++|++. ...+|+|||+||+||.+. .+.|.|..
T Consensus 16 ~e~~~Fqae~~~ll~ll------~~~lYs~----~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~---- 81 (239)
T 3nmq_A 16 VETFAFQAEIAQLMSLI------INTFYSN----KEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP---- 81 (239)
T ss_dssp CEEEECCHHHHHHHHHH------HHSCCCC----TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE----
T ss_pred ceeEeehhhHHHHHHHH------HHhccCC----cHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE----
Confidence 46678888776666655 5666544 345599999999999642 35666653
Q ss_pred cCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCC--------CCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCc
Q 006934 156 KAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRS 226 (625)
Q Consensus 156 ~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k--------~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s 226 (625)
+.....|+|.|||.||++++|.++|. ++.|.+ ...+...||+||+||+|++| +|++|+|.||+.+.
T Consensus 82 --d~~~~~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~-- 156 (239)
T 3nmq_A 82 --NPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD-- 156 (239)
T ss_dssp --ETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--
T ss_pred --eCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--
Confidence 34578999999999999999977653 443321 12356899999999999877 99999999999754
Q ss_pred eeEEEEEecCCCccEEEeCcc--cCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhHH
Q 006934 227 IAFLSQSLNQGKDNLEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 286 (625)
Q Consensus 227 ~~~ls~sf~~g~~~i~Vp~~~--~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I~ 286 (625)
.++.|.+ .+...+.|.... -..+||.|+||++++. +++.++.++. |.+||.|..+||.
T Consensus 157 ~~~~W~s--~~~g~fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~ 218 (239)
T 3nmq_A 157 EQYAWES--SAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPIT 218 (239)
T ss_dssp CCEEEEE--CSTTEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred ceeEEEE--CCCCcEEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceE
Confidence 5788887 555677775543 2358999999999876 7888889876 8999999998874
No 3
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.89 E-value=1.7e-24 Score=222.47 Aligned_cols=175 Identities=24% Similarity=0.342 Sum_probs=133.0
Q ss_pred CCCcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEecee
Q 006934 91 RPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYF 154 (625)
Q Consensus 91 ~~~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~A----------------t~v~I~i~~~~~ 154 (625)
....++||++....++.+ ++++++.. ..+|+|||+||+||.+ ..+.|.|..
T Consensus 22 ~~e~~~Fqaei~~Ll~ll------~~~lYsn~----~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~--- 88 (281)
T 3peh_A 22 SMESHQYQTEVTRLMDII------VNSLYTQK----EVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA--- 88 (281)
T ss_dssp CCCCHHHHHHHHHHHHHH------HHHHTTCG----GGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE---
T ss_pred ccceeeehHHHHHHHHHH------HHhccCCh----HHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE---
Confidence 345677887766666555 66665443 4459999999999964 346666653
Q ss_pred ccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCCC---------CCCCCcccccCceeeeeccccCCeEEEEEEeCCC
Q 006934 155 KKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS 224 (625)
Q Consensus 155 ~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~---------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~ 224 (625)
+.....|+|.|||+||++++|.++|+ ++.|.+. ..+...||+|||||+||+| +|++|+|+||+.+.
T Consensus 89 ---d~~~~tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~~ 164 (281)
T 3peh_A 89 ---NKEKNILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNDD 164 (281)
T ss_dssp ---ETTTTEEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTTS
T ss_pred ---cCCCcEEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCCC
Confidence 34468999999999999999988763 5544311 2356899999999999977 99999999999874
Q ss_pred CceeEEEEEecCCCccEEEeCcc---cCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhHH
Q 006934 225 RSIAFLSQSLNQGKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 286 (625)
Q Consensus 225 ~s~~~ls~sf~~g~~~i~Vp~~~---~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I~ 286 (625)
.++.|.+ .+...+.|.... -..+||.|+|+++++. +++.++.++. |.+||.|..+||.
T Consensus 165 --~~~~Wes--~g~g~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~ 227 (281)
T 3peh_A 165 --EQYIWES--TADAKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIY 227 (281)
T ss_dssp --CCEEEEE--ETTSCEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEE
T ss_pred --CEEEEEE--CCCccEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceE
Confidence 5788877 455667665432 3468999999999876 7888899876 8899999998884
No 4
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.85 E-value=2e-22 Score=207.04 Aligned_cols=172 Identities=20% Similarity=0.322 Sum_probs=127.1
Q ss_pred CcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceecc
Q 006934 93 EPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKK 156 (625)
Q Consensus 93 ~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~A----------------t~v~I~i~~~~~~~ 156 (625)
..++|+++....++.+ +++|++. ...+|+|||+||+||.+ ..+.|.|..
T Consensus 6 e~~~Fqaei~~Ll~li------~~~lYsn----~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~----- 70 (269)
T 1qy5_A 6 EKFAFQAEVNRMMKLI------INSLYKN----KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC----- 70 (269)
T ss_dssp EEECCCHHHHHHHHHH------HHHHTTC----TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE-----
T ss_pred cceeehhhHHHHHHHH------HHhccCC----chHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE-----
Confidence 3455666554444444 5555544 34569999999999975 456676653
Q ss_pred CCCCCCEEEEEeCCCCCChhhHhhhh-hcccCCCC-------------CCCCCcccccCceeeeeccccCCeEEEEEEeC
Q 006934 157 AGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQPD-------------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA 222 (625)
Q Consensus 157 ~~~~~~~L~I~DNG~GMt~eel~~~l-~fG~s~k~-------------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~ 222 (625)
+.+...|+|.|||+||++++|.++| .++.|.+. ..+...||+||+||++++| +|++|+|+||+.
T Consensus 71 -d~~~~~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~-va~~v~V~Sk~~ 148 (269)
T 1qy5_A 71 -DKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHN 148 (269)
T ss_dssp -ETTTTEEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGG-TEEEEEEEEECT
T ss_pred -cCCceEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhh-ccceEEEEEEec
Confidence 2456799999999999999998876 45555210 0356789999999999877 999999999998
Q ss_pred CCCceeEEEEEecCCCccEEEeCcc---cCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhHH
Q 006934 223 DSRSIAFLSQSLNQGKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 286 (625)
Q Consensus 223 ~~~s~~~ls~sf~~g~~~i~Vp~~~---~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I~ 286 (625)
+. .++.|.+ .+ ..+.|.... -..+||.|+|+++.+. +++.++.++. |.+||.|..+||.
T Consensus 149 ~~--~~~~w~s--~g-g~~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~ 212 (269)
T 1qy5_A 149 ND--TQHIWES--DS-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 212 (269)
T ss_dssp TS--CCEEEEE--CS-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEE
T ss_pred CC--cEEEEEE--eC-CEEEEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeE
Confidence 74 5778876 44 566665432 2468999999998765 6777888876 8899999998884
No 5
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.85 E-value=1.1e-22 Score=206.98 Aligned_cols=176 Identities=23% Similarity=0.305 Sum_probs=131.0
Q ss_pred CCCCcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCCC----------------ccEEEEEece
Q 006934 90 SRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIY 153 (625)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~At----------------~v~I~i~~~~ 153 (625)
.....++||++....++.+ +++|++. ...+|+|||+||+||.++ .+.|.|..
T Consensus 35 ~~~e~~~Fqaei~~Ll~ll------~~~lYs~----~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~-- 102 (256)
T 3o0i_A 35 EEVETFAFQAEIAQLMSLI------INTFYSN----KEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP-- 102 (256)
T ss_dssp -CCEEEECCHHHHHHHHHH------HHSCCSC----TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE--
T ss_pred ccceeEEeEeeHHHHHHHH------HHhccCC----cHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE--
Confidence 3456677887766565555 5666544 345599999999999763 46676653
Q ss_pred eccCCCCCCEEEEEeCCCCCChhhHhhhh-hcccCCC--------CCCCCCcccccCceeeeeccccCCeEEEEEEeCCC
Q 006934 154 FKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS 224 (625)
Q Consensus 154 ~~~~~~~~~~L~I~DNG~GMt~eel~~~l-~fG~s~k--------~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~ 224 (625)
+.+...|+|.|||.||++++|..+| .++.|.. ...+...||+||+||+|+++ ++++|+|.||+.+
T Consensus 103 ----d~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~- 176 (256)
T 3o0i_A 103 ----NKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND- 176 (256)
T ss_dssp ----ETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT-
T ss_pred ----cCCceEEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCC-
Confidence 3457899999999999999998766 3444321 11346899999999999877 9999999999976
Q ss_pred CceeEEEEEecCCCccEEEeCcc--cCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhHH
Q 006934 225 RSIAFLSQSLNQGKDNLEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 286 (625)
Q Consensus 225 ~s~~~ls~sf~~g~~~i~Vp~~~--~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I~ 286 (625)
..++.|.+ .+...+.|.... -..+||.|+++++.+. ++...+.++. |.+|+.|..+||.
T Consensus 177 -~~g~~w~s--~gg~~~~v~~~~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~ 239 (256)
T 3o0i_A 177 -DEQYAWES--SAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 239 (256)
T ss_dssp -SCEEEEEE--CSTTEEEEEECCSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEE
T ss_pred -CceEEEEE--eccceEEEeeCCCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeE
Confidence 35888877 455566665432 3368999999999765 6777778776 8999999998774
No 6
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.84 E-value=8.8e-22 Score=198.87 Aligned_cols=156 Identities=21% Similarity=0.324 Sum_probs=113.2
Q ss_pred hcccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhh
Q 006934 119 GQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 182 (625)
Q Consensus 119 s~~~~~~~f~AIaELIdNA~DA~A----------------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l 182 (625)
+.+.++.+..+|+|||+||+||+| +.+.|.|.. +.+...|+|.|||+||++++|.++|
T Consensus 26 ~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~------d~~~~~i~I~DnG~GMt~edl~~~l 99 (236)
T 2gqp_A 26 INSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTGVGMTREELVKNL 99 (236)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEECSCCCCHHHHHHHH
T ss_pred HHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE------cCCCCEEEEEECCcCCCHHHHHHHH
Confidence 333344567789999999999976 345566543 2345799999999999999998876
Q ss_pred -hcccCCCC--------C-----CCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeCcc-
Q 006934 183 -YFGHKQPD--------A-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS- 247 (625)
Q Consensus 183 -~fG~s~k~--------~-----~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~~~- 247 (625)
.++.|.+. . .+...||+||+||+++++ +|++|+|+||+.+. .++.|.+ .+ ..+.|....
T Consensus 100 ~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~-va~~v~V~Sr~~~~--~~~~w~~--~g-g~~~i~~~~~ 173 (236)
T 2gqp_A 100 GTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFSVIADPR 173 (236)
T ss_dssp HCC---------------------CHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--SS-SCEEEEECTT
T ss_pred hhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhh-cCCEEEEEEeCCCC--ceEEEEE--eC-CEEEEEeccC
Confidence 46666321 0 345689999999988776 99999999999875 4677766 44 566554332
Q ss_pred --cCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhHH
Q 006934 248 --YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 286 (625)
Q Consensus 248 --~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I~ 286 (625)
-..+||.|+++++.+. ++...+.+.. |.+|++|..+||.
T Consensus 174 ~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~ 216 (236)
T 2gqp_A 174 GNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 216 (236)
T ss_dssp CSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred CCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceE
Confidence 2357999999998765 5666777765 8999999998774
No 7
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.84 E-value=9.6e-22 Score=197.49 Aligned_cols=173 Identities=24% Similarity=0.312 Sum_probs=125.9
Q ss_pred CcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCCC----------------ccEEEEEeceecc
Q 006934 93 EPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKK 156 (625)
Q Consensus 93 ~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~At----------------~v~I~i~~~~~~~ 156 (625)
..++||++....++.+ +++| ++.+..+|+|||+||+||+++ .+.|.|..
T Consensus 10 ~~~~Fq~ei~~ll~ll------~~~l----Ys~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~----- 74 (228)
T 3t0h_A 10 ETFAFQAEIAQLMSLI------INTF----YSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP----- 74 (228)
T ss_dssp EEEECCHHHHHHHHHH------HHSC----CSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE-----
T ss_pred cceEEEeeHHHHHHHH------HHhh----cCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEE-----
Confidence 3455655544443333 4444 445567799999999999763 46666653
Q ss_pred CCCCCCEEEEEeCCCCCChhhHhhhh-hcccCCCC--------CCCCCcccccCceeeeeccccCCeEEEEEEeCCCCce
Q 006934 157 AGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSI 227 (625)
Q Consensus 157 ~~~~~~~L~I~DNG~GMt~eel~~~l-~fG~s~k~--------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~ 227 (625)
+.+...|+|.|||.||++++|..++ .++.|.+. ..+...||+||+||+|+++ ++++++|.||+.+ ..
T Consensus 75 -d~~~~~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~-vad~v~V~Sr~~~--~~ 150 (228)
T 3t0h_A 75 -NKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND--DE 150 (228)
T ss_dssp -ETTTTEEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT--SC
T ss_pred -eCCeeEEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc-cCCEEEEEEecCC--CC
Confidence 3457899999999999999998765 35544221 1346799999999998876 9999999999976 35
Q ss_pred eEEEEEecCCCccEEEeCcc--cCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhHH
Q 006934 228 AFLSQSLNQGKDNLEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 286 (625)
Q Consensus 228 ~~ls~sf~~g~~~i~Vp~~~--~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I~ 286 (625)
++.|.+ .+...+.|.... -..+||.|+++++.+. ++...+.+.. |.+|+.|..+||.
T Consensus 151 ~~~w~~--~g~~~~~v~~~~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~ 211 (228)
T 3t0h_A 151 QYAWES--SAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 211 (228)
T ss_dssp EEEEEE--CSTTEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEE
T ss_pred cEEEEE--cCCceEEEeecCCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeE
Confidence 788876 455566665432 3468999999999876 6776777766 8999999988774
No 8
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.5e-21 Score=221.55 Aligned_cols=173 Identities=22% Similarity=0.300 Sum_probs=130.8
Q ss_pred CcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceecc
Q 006934 93 EPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKK 156 (625)
Q Consensus 93 ~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~A----------------t~v~I~i~~~~~~~ 156 (625)
..++||++....++.+ ++++++.+ ..+|+|||+||+||++ ..+.|.|..
T Consensus 4 e~~~Fqae~~~Ll~li------~~sLYsnk----eifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~----- 68 (677)
T 2cg9_A 4 ETFEFQAEITQLMSLI------INTVYSNK----EIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP----- 68 (677)
T ss_dssp EEEECCCCHHHHHHHH------HHSCCSCT----THHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEE-----
T ss_pred cceehhhhHHHHHHHH------HHhCCCCc----hHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEE-----
Confidence 4577887776666665 66665544 4459999999999973 345555543
Q ss_pred CCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCC--------CCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCce
Q 006934 157 AGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSI 227 (625)
Q Consensus 157 ~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k--------~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~ 227 (625)
+.+...|+|.|||+||+.++|.++|+ ++.|.+ ...+...|||||+||++|+| ++++|+|+||+.+. .
T Consensus 69 -d~~~~~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~-vadkV~V~Sk~~~~--~ 144 (677)
T 2cg9_A 69 -KPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--E 144 (677)
T ss_dssp -EGGGTEEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGG-TEEEEEEEEECTTS--C
T ss_pred -eCCCCEEEEEECCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhh-cCcEEEEEEccCCC--c
Confidence 23357999999999999999998763 555532 12356799999999998877 99999999999874 4
Q ss_pred eEEEEEecCCCccEEEeCc---ccCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhHH
Q 006934 228 AFLSQSLNQGKDNLEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 286 (625)
Q Consensus 228 ~~ls~sf~~g~~~i~Vp~~---~~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I~ 286 (625)
++.|.+ .+...+.|... .-..+||.|+++++.+. +++.++.++. |.+||.|..+||.
T Consensus 145 ~~~W~s--~g~~~~ti~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~ 206 (677)
T 2cg9_A 145 QYIWES--NAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQ 206 (677)
T ss_dssp EEEEEE--CSSSEEEEEECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEE
T ss_pred eEEEEE--cCCceEEEeecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeE
Confidence 888877 45556666542 33468999999999866 7788888876 8899999999884
No 9
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.83 E-value=4.1e-21 Score=196.86 Aligned_cols=163 Identities=23% Similarity=0.312 Sum_probs=124.3
Q ss_pred HHHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 113 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 113 ~~L~sls~~~~~~~f~AIaELIdNA~DA~A----------------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
..+..++...++.+..+|+|||+||+||+| +.+.|.|.. +.+...|+|.|||+||+++
T Consensus 56 ~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~------d~~~~~I~I~DnG~GMs~e 129 (264)
T 1yc1_A 56 QLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTKA 129 (264)
T ss_dssp HHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEE------CCCeeEEEEEECCcCCCHH
Confidence 445555655667788899999999999987 778888763 2346799999999999999
Q ss_pred hHhhhh-hcccCCCC--------CCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeCcc
Q 006934 177 DVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS 247 (625)
Q Consensus 177 el~~~l-~fG~s~k~--------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~~~ 247 (625)
+|..+| .++.|.+. ..+...||+||+||+++++ ++++++|+||+.+. .++.|... +...+.|....
T Consensus 130 dL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~--~~~~w~~~--~~~~~~i~~~~ 204 (264)
T 1yc1_A 130 DLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESS--AGGSFTVRTDT 204 (264)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTTS--CCEEEEEC--STTEEEEEECC
T ss_pred HHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCCC--ceEEEEEc--CCceEEEeecC
Confidence 998865 57766432 1356799999999998877 99999999999874 46778763 33455554321
Q ss_pred --cCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhHH
Q 006934 248 --YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 286 (625)
Q Consensus 248 --~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I~ 286 (625)
-...||.|+++++.+. ++...+.+.. |.+|+.|..+||.
T Consensus 205 ~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~ 247 (264)
T 1yc1_A 205 GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 247 (264)
T ss_dssp SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEE
T ss_pred CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEE
Confidence 2357999999998765 5666677765 8899999988773
No 10
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.82 E-value=3.4e-21 Score=215.33 Aligned_cols=174 Identities=22% Similarity=0.319 Sum_probs=128.2
Q ss_pred CcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEeceecc
Q 006934 93 EPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKK 156 (625)
Q Consensus 93 ~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~----------------At~v~I~i~~~~~~~ 156 (625)
..++|+++....++.+ +++++ +.+..+|+|||+||+||+ ++.+.|.|..
T Consensus 5 e~~~Fqaei~~Ll~ll------~~~lY----sn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~----- 69 (559)
T 1y4s_A 5 ETRGFQSEVKQLLHLM------IHSLY----SNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF----- 69 (559)
T ss_dssp EEEECCTTHHHHHHHH------HHHTG----GGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEE-----
T ss_pred cceeeeecHHHHHHHH------HHhcC----CChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEE-----
Confidence 3456666654444443 44554 445667999999999998 5555565553
Q ss_pred CCCCCCEEEEEeCCCCCChhhHhhhh-hcccCCCC----------CCCCCcccccCceeeeeccccCCeEEEEEEeCCC-
Q 006934 157 AGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS- 224 (625)
Q Consensus 157 ~~~~~~~L~I~DNG~GMt~eel~~~l-~fG~s~k~----------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~- 224 (625)
+.+...|+|.|||+||++++|.+++ .++.|.+. ..+...||+||+||+|++| +|++|+|.||+.+.
T Consensus 70 -d~~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~ 147 (559)
T 1y4s_A 70 -DKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEK 147 (559)
T ss_dssp -ETTTTEEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSSSC
T ss_pred -eCCCcEEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCCCC
Confidence 2335799999999999999998876 46666532 1256799999999998877 99999999999873
Q ss_pred CceeEEEEEecCCCccEEEeCcccCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhH
Q 006934 225 RSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLI 285 (625)
Q Consensus 225 ~s~~~ls~sf~~g~~~i~Vp~~~~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I 285 (625)
...++.|.+ .+...+.|...+-..+||.|+++++++. +++..+.++. |.+||.|..+||
T Consensus 148 ~~~~~~w~s--~g~~~~~i~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI 208 (559)
T 1y4s_A 148 PENGVFWES--AGEGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPV 208 (559)
T ss_dssp GGGEEEEEE--CSSSEEEEEEECCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCE
T ss_pred CCeeEEEEE--eCCCeeEEeECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCce
Confidence 356888877 4555666654434568999999999765 6777888876 889999998776
No 11
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.82 E-value=6.4e-21 Score=190.47 Aligned_cols=161 Identities=22% Similarity=0.307 Sum_probs=119.4
Q ss_pred HHHHhhcccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhh
Q 006934 114 YLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 177 (625)
Q Consensus 114 ~L~sls~~~~~~~f~AIaELIdNA~DA~A----------------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~ee 177 (625)
.++.++.+.++.+..+|+|||+||+||+| ..+.|.+.. +.+...|+|.|||.||++++
T Consensus 15 l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~------~~~~~~i~I~DnG~GMs~ed 88 (220)
T 2wer_A 15 LMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDSGIGMTKAE 88 (220)
T ss_dssp HHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEE------EGGGTEEEEEECSCCCCHHH
T ss_pred HHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEE------CCCCCEEEEEEcCCCCCHHH
Confidence 34444544456667889999999999987 455666653 23467999999999999999
Q ss_pred Hhhhh-hcccCCC--------CCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeCcc-
Q 006934 178 VVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS- 247 (625)
Q Consensus 178 l~~~l-~fG~s~k--------~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~~~- 247 (625)
|..+| .++.|.+ ...+...||+||+||+++++ ++++++|.|++.+. .++.|.. .+...+.+....
T Consensus 89 l~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~-~~~~v~v~S~~~~~--~~~~~~~--~~~~~~~i~~~~~ 163 (220)
T 2wer_A 89 LINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWES--NAGGSFTVTLDEV 163 (220)
T ss_dssp HHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CSSSEEEEEECSS
T ss_pred HHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh-cCCeeEEEEecCCC--ceeEEEe--CCCCceEeecccC
Confidence 98876 5666532 12356799999999987765 99999999999864 4777766 344455554332
Q ss_pred --cCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhH
Q 006934 248 --YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLI 285 (625)
Q Consensus 248 --~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I 285 (625)
-..+||.|+++++.+. ++...+.+.. |.+|+.|..+||
T Consensus 164 ~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI 205 (220)
T 2wer_A 164 NERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPI 205 (220)
T ss_dssp SCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCE
T ss_pred CCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCce
Confidence 3357999999998765 5666677765 889999998877
No 12
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.82 E-value=5.6e-21 Score=216.81 Aligned_cols=171 Identities=20% Similarity=0.342 Sum_probs=111.7
Q ss_pred CcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEeceecc
Q 006934 93 EPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKK 156 (625)
Q Consensus 93 ~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~----------------At~v~I~i~~~~~~~ 156 (625)
+.++||++....++.+ ++++++.. ..+|+|||+||+||+ ++.+.|.|..
T Consensus 23 e~~~Fqaei~~Ll~li------~~sLYsn~----eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~----- 87 (666)
T 2o1u_A 23 EKFAFQAEVNRMMKLI------INSLYKNK----EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC----- 87 (666)
T ss_dssp -----------CCSSS------TTTTSSSC----TTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE-----
T ss_pred cceehHHhHHHHHHHH------HHhccCCc----hHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEE-----
Confidence 5688999988888887 67776554 445999999999997 6556666653
Q ss_pred CCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCC--------CC-----CCCCcccccCceeeeeccccCCeEEEEEEeC
Q 006934 157 AGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------DA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTA 222 (625)
Q Consensus 157 ~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k--------~~-----~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~ 222 (625)
+.+...|+|.|||+||+.++|..+|. ++.|.+ .. .+...||+||+||++++| +|++|+|+||+.
T Consensus 88 -d~~~~~I~I~DnGiGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~-vAdkV~V~Sr~~ 165 (666)
T 2o1u_A 88 -DKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHN 165 (666)
T ss_dssp -ETTTTEEEEEECSCCCCHHHHHHHTTC-------------------------------CTTGGGGG-TEEEEEEEEECT
T ss_pred -eCCCCEEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHH-hcCEEEEEEeeC
Confidence 23457999999999999999998763 555422 11 356799999999998877 999999999998
Q ss_pred CCCceeEEEEEecCCCccEEEeCcc---cCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhH
Q 006934 223 DSRSIAFLSQSLNQGKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLI 285 (625)
Q Consensus 223 ~~~s~~~ls~sf~~g~~~i~Vp~~~---~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I 285 (625)
+. .++.|.+ .+ ..+.|.... -..+||.|+++++++. +++..+.++. |.+||.|..+||
T Consensus 166 ~~--~~~~W~s--~g-g~~ti~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI 228 (666)
T 2o1u_A 166 ND--TQHIWES--DS-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPI 228 (666)
T ss_dssp TS--CCEEEEE--SS-SCCEEEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCE
T ss_pred CC--ceEEEEE--eC-CeEEEEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCce
Confidence 75 4788876 45 556554332 2458999999999765 6777888876 889999998876
No 13
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.81 E-value=5.3e-21 Score=216.25 Aligned_cols=174 Identities=22% Similarity=0.325 Sum_probs=123.6
Q ss_pred CcccccccCCCCceeeecCHHHHHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEeceecc
Q 006934 93 EPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKK 156 (625)
Q Consensus 93 ~~~~~~~~~~~~~~~v~v~p~~L~sls~~~~~~~f~AIaELIdNA~DA~----------------At~v~I~i~~~~~~~ 156 (625)
..++|+++....++.+ ++++++. +..+|+|||+||+||+ ++.+.|.|..
T Consensus 5 e~~~Fqaei~~Ll~ll------~~~lYsn----~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~----- 69 (624)
T 2ioq_A 5 ETRGFQSEVKQLLHLM------IHSLYSN----KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF----- 69 (624)
T ss_dssp ----------CCHHHH------HHHHSSC----TTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE-----
T ss_pred cceeeeecHHHHHHHH------HHhcCCC----hHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE-----
Confidence 5578888887777666 6777554 4556999999999997 5556666653
Q ss_pred CCCCCCEEEEEeCCCCCChhhHhhhh-hcccCCCC----------CCCCCcccccCceeeeeccccCCeEEEEEEeCCC-
Q 006934 157 AGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS- 224 (625)
Q Consensus 157 ~~~~~~~L~I~DNG~GMt~eel~~~l-~fG~s~k~----------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~- 224 (625)
+.+...|+|.|||+||++++|..++ .++.|.+. ..+...||+||+||+|++| +|++|+|+||+.+.
T Consensus 70 -d~~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~ 147 (624)
T 2ioq_A 70 -DKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEK 147 (624)
T ss_dssp -ETTTTEEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHH-HEEEEEEEEECTTSC
T ss_pred -eCCCcEEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHh-cCCeEEEEECCCCCC
Confidence 2345799999999999999998876 46665431 1356799999999998877 99999999999873
Q ss_pred CceeEEEEEecCCCccEEEeCcccCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhH
Q 006934 225 RSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLI 285 (625)
Q Consensus 225 ~s~~~ls~sf~~g~~~i~Vp~~~~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I 285 (625)
...++.|.+ .+...+.|...+-..+||.|+++++++. +++..+.++. |.+||.|..+||
T Consensus 148 ~~~~~~w~s--~g~~~~~i~~~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI 208 (624)
T 2ioq_A 148 PENGVFWES--AGEGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPV 208 (624)
T ss_dssp GGGEEEEEE--CSSSCCEEEEECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCE
T ss_pred CCeeEEEEE--eCCCeEEEEECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCce
Confidence 356888877 4444555543334568999999999765 7777888876 889999998876
No 14
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.80 E-value=2.4e-20 Score=188.17 Aligned_cols=162 Identities=23% Similarity=0.330 Sum_probs=118.0
Q ss_pred HHHhhcccccCHHHHHHHHHhcccccC----------------CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhH
Q 006934 115 LQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 178 (625)
Q Consensus 115 L~sls~~~~~~~f~AIaELIdNA~DA~----------------At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel 178 (625)
+..++...++.+..||+|||+||+||+ ++.+.|.|.. +.+...|+|.|||.||++++|
T Consensus 37 ~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~------~~~~~~i~I~DnG~GMs~edl 110 (235)
T 2ior_A 37 LHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNGVGMTRDEV 110 (235)
T ss_dssp HHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEE------ETTTTEEEEEECSSCCCHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEE------cCCceEEEEEECCCCCCHHHH
Confidence 333344444567788999999999998 5556666653 233468999999999999999
Q ss_pred hhhh-hcccCCCC----------CCCCCcccccCceeeeeccccCCeEEEEEEeCCCC-ceeEEEEEecCCCccEEEeCc
Q 006934 179 VRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR-SIAFLSQSLNQGKDNLEIPIV 246 (625)
Q Consensus 179 ~~~l-~fG~s~k~----------~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~-s~~~ls~sf~~g~~~i~Vp~~ 246 (625)
..+| .++.|.+. ..+...+|+||+||+++++ ++++++|.|++.+.. ..++.|.. .+...+.+...
T Consensus 111 ~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~-~~~~v~V~Sr~~~~~~~~~~~w~~--~~~~~~~i~~~ 187 (235)
T 2ior_A 111 IDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES--AGEGEYTVADI 187 (235)
T ss_dssp HHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGG-TEEEEEEEEECTTSCGGGEEEEEE--CSSSEEEEEEE
T ss_pred HHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHh-CcCeEEEEEecCCCCCceeEEEEe--cCCCcEEEeeC
Confidence 8865 57776431 0135689999999987755 999999999998652 46788876 34445555433
Q ss_pred ccCCCCcEEEEEeccch-hhhhhhhhhh-hcccCCCchhhH
Q 006934 247 SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLI 285 (625)
Q Consensus 247 ~~~~~Gt~i~l~~~~~~-e~~~~~~l~~-I~kySpF~s~~I 285 (625)
+-...||.|+++++++. ++...+.+.. |.+|+.|..+||
T Consensus 188 ~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI 228 (235)
T 2ior_A 188 TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPV 228 (235)
T ss_dssp CCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCE
T ss_pred CCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCe
Confidence 34468999999998765 5666666655 889999988776
No 15
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.66 E-value=3.6e-17 Score=134.21 Aligned_cols=55 Identities=33% Similarity=0.659 Sum_probs=49.0
Q ss_pred CCCCCCCCceecCc--chhhhhccCCCCCCCCCCCCccccCCCC--CCCCCCCcccccc
Q 006934 508 GALYKPDQEWVQCN--KCRKWRMLDPGFDTKSLPVEWFCYMKPF--EGLCDLPEQKVDA 562 (625)
Q Consensus 508 ~~~~~~~~~WvQCd--~C~KWR~lp~~~~~~~~p~~W~C~~n~~--~~~C~~pEe~~~~ 562 (625)
+....+...||||| .|+|||+||.++++..+|++|+|+||++ +++|++|||.++.
T Consensus 9 ~~~~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 9 ISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEETWTG 67 (69)
T ss_dssp SSSCCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCSCGGGCSSSSCCCCCCC
T ss_pred CCCCCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCCCCccCCCCCCcccCCC
Confidence 34456688999999 9999999999999888999999999997 5999999998764
No 16
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=1.2e-16 Score=139.68 Aligned_cols=59 Identities=19% Similarity=0.524 Sum_probs=50.1
Q ss_pred CCCCCCCceecCcchhhhhccCCCCC-CCCCCCCccccCCCC--CCCCCCCccccccccccc
Q 006934 509 ALYKPDQEWVQCNKCRKWRMLDPGFD-TKSLPVEWFCYMKPF--EGLCDLPEQKVDAGVVTV 567 (625)
Q Consensus 509 ~~~~~~~~WvQCd~C~KWR~lp~~~~-~~~~p~~W~C~~n~~--~~~C~~pEe~~~~~~~~~ 567 (625)
..+.+..+|||||+|+|||+||.++. ...+|++|+|+||++ +++|++|||.++..+..+
T Consensus 20 ~~~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~D~~~nsCs~PEE~~~~ei~~~ 81 (100)
T 2l7p_A 20 DSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQEMSNEEINEE 81 (100)
T ss_dssp SCCSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSSCSSSCSTTSCCSSCHHHHHHH
T ss_pred CCCCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCCCCCCCCCCCccCCCHHHHHHH
Confidence 44667899999999999999998765 356899999999997 599999999998876543
No 17
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.49 E-value=1e-13 Score=146.45 Aligned_cols=140 Identities=20% Similarity=0.261 Sum_probs=102.3
Q ss_pred ceeeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhh-
Q 006934 105 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT- 182 (625)
Q Consensus 105 ~~~v~v~p~~L~sl-s~~~~~~~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l- 182 (625)
|.+..+++...+.+ +...+..+..||+|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++
T Consensus 3 m~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~ 75 (333)
T 1b63_A 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIER-------GGAKLIRIRDNGCGIKKDELALALA 75 (333)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGHHHHHS
T ss_pred CcceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEe-------CCceEEEEEEcCCCcCHHHHHHhhh
Confidence 55888999999999 445567899999999999999999999998872 335789999999999999999987
Q ss_pred hcccCCCCCC-----CCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCc-cEEEeCcccCCCCcEEE
Q 006934 183 YFGHKQPDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD-NLEIPIVSYYRKGQFME 256 (625)
Q Consensus 183 ~fG~s~k~~~-----~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~-~i~Vp~~~~~~~Gt~i~ 256 (625)
.|+.+ |... ....+|.+|+|+.+.++ ++ +++|.||+.+.. .++.+ +.+|.. .+.+. ..-...||.|+
T Consensus 76 ~~~ts-K~~~~~d~~~~~~~G~~G~gl~si~~-vs-~l~v~s~~~~~~-~~~~~--~~~g~~~~~~~~-~~~~~~GT~V~ 148 (333)
T 1b63_A 76 RHATS-KIASLDDLEAIISLGFRGEALASISS-VS-RLTLTSRTAEQQ-EAWQA--YAEGRDMNVTVK-PAAHPVGTTLE 148 (333)
T ss_dssp TTCCS-SCCSHHHHHTCCSSCCSSCHHHHHHT-TS-EEEEEEECTTCS-SEEEE--EEETTTTEEEEE-EECCCSEEEEE
T ss_pred ccccc-CccccchhhhccccCccccchhhhhc-CC-cEEEEEecCCCc-eEEEE--EEcCCcceEeee-cccCCCCCEEE
Confidence 46554 3211 13578999999965543 66 899999998752 34433 334433 22221 12345799988
Q ss_pred EE
Q 006934 257 LD 258 (625)
Q Consensus 257 l~ 258 (625)
+.
T Consensus 149 v~ 150 (333)
T 1b63_A 149 VL 150 (333)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 18
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.6e-13 Score=146.64 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=93.1
Q ss_pred eeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-c
Q 006934 107 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 184 (625)
Q Consensus 107 ~v~v~p~~L~sl-s~~~~~~~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-f 184 (625)
|..+++..++.+ +...+..+..+|.|||+||+||+|+.|.|.+. ..+...|+|.|||.||+++++..++. |
T Consensus 6 I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~-------~~~~~~i~V~DnG~Gi~~~~l~~~~~~~ 78 (367)
T 3h4l_A 6 IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFK-------DYGLESIECSDNGDGIDPSNYEFLALKH 78 (367)
T ss_dssp -------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEE-------TTTTSEEEEEECSCCCCGGGTTTTTCCE
T ss_pred ceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEE-------eCCEEEEEEEECCCCcChhHhccceecc
Confidence 778899999999 45666789999999999999999999999886 34567999999999999999988764 3
Q ss_pred ccCCC-CCCC---CCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeCcccCCCCcEEEEE
Q 006934 185 GHKQP-DADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 258 (625)
Q Consensus 185 G~s~k-~~~~---~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~~~~~~~Gt~i~l~ 258 (625)
..+.. ...+ ....|..|.|+.+.+ .++ +++|.||+.+ ..++.+.. ++.+.+..+...-...||.|++.
T Consensus 79 ~tsK~~~~~Dl~~i~t~GfrGeaL~Si~-avS-~l~V~sr~~~--~~~~~~~~--~~~G~~~~~~~~~~~~GTtV~v~ 150 (367)
T 3h4l_A 79 YTSKIAKFQDVAKVQTLGFRGEALSSLC-GIA-KLSVITTTSP--PKADKLEY--DMVGHITSKTTTSRNKGTTVLVS 150 (367)
T ss_dssp EC---------CCCCEEEETTHHHHHHH-HSS-EEEEEEESST--TCEEEEEE--CTTCCEEEEEEECCSSEEEEEEE
T ss_pred ccCcCCchhhhhhhhccCccchHHHHhh-ccC-EEEEEEEECC--CCEEEEEE--cCCCcEEeeccccCCCCeEEEEc
Confidence 33321 1122 245688899995544 477 6999999987 45555543 22223332223334689999874
No 19
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.37 E-value=1.1e-12 Score=140.32 Aligned_cols=141 Identities=16% Similarity=0.222 Sum_probs=87.1
Q ss_pred eeeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-
Q 006934 106 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY- 183 (625)
Q Consensus 106 ~~v~v~p~~L~sl-s~~~~~~~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~- 183 (625)
.+..+++..++.+ +...+..+..||+|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++.
T Consensus 14 ~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~-------~~~~~I~V~DnG~Gi~~~~l~~~f~~ 86 (365)
T 1h7s_A 14 AIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKD-------YGVDLIEVSDNGCGVEEENFEGLTLK 86 (365)
T ss_dssp ---------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGSGGGGC-
T ss_pred hhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCcEEEEEEECCCCcCHHHHHHHhhh
Confidence 4778889999999 445667899999999999999999999998862 2456999999999999999998764
Q ss_pred cccCCCCC-CCC---CcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeCcccCCCCcEEEEE
Q 006934 184 FGHKQPDA-DDP---NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 258 (625)
Q Consensus 184 fG~s~k~~-~~~---~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~~~~~~~Gt~i~l~ 258 (625)
|..+.... .+. ...|.+|+|+.+.++ ++ +++|.||+.+. ..++.+. |. +...+..+...-..+||.|++.
T Consensus 87 ~~tsK~~~~~dl~~i~s~G~rG~gl~si~~-vs-~v~v~t~~~~~-~~~~~~~-~~-~~G~~~~~~~~~~~~GT~V~v~ 160 (365)
T 1h7s_A 87 HHTSKIQEFADLTQVETFGFRGEALSSLCA-LS-DVTISTCHASA-KVGTRLM-FD-HNGKIIQKTPYPRPRGTTVSVQ 160 (365)
T ss_dssp ---------CCTTCSEEESSSSSHHHHHHH-HS-EEEEEEECTTC-SSCEEEE-EC-TTSCEEEEEECCCCSEEEEEEE
T ss_pred ccccccccccchhcccccCCCCchhhhhhh-hc-cEEEEEccCCC-cceEEEE-Ec-CCCceEeecccCCCCCcEEEEe
Confidence 54442211 122 347889999955444 77 99999999775 3344443 22 1223333222334579999885
No 20
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.35 E-value=1.6e-12 Score=137.98 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=98.2
Q ss_pred CceeeecCHHHHHHh-hcccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhh
Q 006934 104 EKNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 182 (625)
Q Consensus 104 ~~~~v~v~p~~L~sl-s~~~~~~~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l 182 (625)
..-+..+++..++.+ +...+..+..+|.|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++
T Consensus 6 ~~~I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~-------~~~~~I~V~DnG~GI~~~~l~~~~ 78 (348)
T 3na3_A 6 AGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKE-------GGLKLIQIQDNGTGIRKEDLDIVC 78 (348)
T ss_dssp CCCCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGGGTTT
T ss_pred ccccccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEe-------CCEEEEEEEECCcCcChHHhhhhh
Confidence 334788999999999 445667899999999999999999999999862 345679999999999999999876
Q ss_pred hcccCCCC--CCC---CCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeC-cccCCCCcEEE
Q 006934 183 YFGHKQPD--ADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRKGQFME 256 (625)
Q Consensus 183 ~fG~s~k~--~~~---~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~-~~~~~~Gt~i~ 256 (625)
...++.|. ..+ ....|.+|.|+.+. ..++ +++|.||+.+.. .++.+. |..|. +..+. +.-...||.|+
T Consensus 79 ~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si-~avs-~l~v~sr~~~~~-~~~~~~-~~~G~--~~~~~~~~~~~~GTtV~ 152 (348)
T 3na3_A 79 ERFTTSKLQSFEDLASISTYGFRGEALASI-SHVA-HVTITTKTADGK-CAYRAS-YSDGK--LKAPPKPCAGNQGTQIT 152 (348)
T ss_dssp STTCCSSCCCC---------CCTTCHHHHH-HHSS-EEEEEEECTTCS-SEEEEE-EETTE--ESSCCEEECCCSEEEEE
T ss_pred ccccccccCcchhhhccccCCcCChHHHHh-hccc-EEEEEEEECCCC-ceEEEE-EeCCE--EeeeeeEecCCCCcEEE
Confidence 53333332 112 35679999999544 4477 899999998753 344332 22332 11011 11245799998
Q ss_pred EE
Q 006934 257 LD 258 (625)
Q Consensus 257 l~ 258 (625)
+.
T Consensus 153 v~ 154 (348)
T 3na3_A 153 VE 154 (348)
T ss_dssp EE
T ss_pred EC
Confidence 74
No 21
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.22 E-value=3e-10 Score=122.48 Aligned_cols=308 Identities=14% Similarity=0.144 Sum_probs=174.8
Q ss_pred CCCceeeecCH-HHHHHhhcccccCHHHHHHHHHhccccc---C-CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 102 PLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 102 ~~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~DA---~-At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
-.++++|+..| +|+-+.... ..+..++.|||+||+|| + |+.|.|.|.. ...|+|.|||.||+.+
T Consensus 12 L~gle~vrkRPgmYiGst~~~--~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---------~g~I~V~DnG~GIp~~ 80 (391)
T 1ei1_A 12 LKGLDAVRKRPGMYIGDTDDG--TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTG 80 (391)
T ss_dssp CCTTHHHHHCTHHHHCCSSSS--HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---------TSCEEEEECSSCCCCS
T ss_pred CchhHHHHcCCCeEECCCCCC--cCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---------CCEEEEEECCCCcccC
Confidence 35778888888 888765432 14788999999999999 5 9999998862 2389999999999998
Q ss_pred hHh--------hhhh-cccCCCC--CCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCC--ccEEE
Q 006934 177 DVV--------RMTY-FGHKQPD--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK--DNLEI 243 (625)
Q Consensus 177 el~--------~~l~-fG~s~k~--~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~--~~i~V 243 (625)
+.. -+|. +..+.|- ......-|..|+|+++. -.|+..++|.|++++. .+.+.|..|. ..+.+
T Consensus 81 ~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~v-nalS~~l~v~~~r~g~----~~~~~~~~G~~~~~l~~ 155 (391)
T 1ei1_A 81 IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV-NALSQKLELVIQREGK----IHRQIYEHGVPQAPLAV 155 (391)
T ss_dssp BCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHH-HHTEEEEEEEEEETTE----EEEEEEETTEESSCCEE
T ss_pred cccccCcchHHHhheeccccCCcCCCcccccCCccccchHHH-HHhcCeEEEEEEeCCc----EEEEEEcCCccccccee
Confidence 842 2343 2222221 11234779999999544 4489999999997652 3445564442 11211
Q ss_pred eCcccCCCCcEEEEEeccchhhhhhhhhhhhccc-CCCchhhHHHHhhhcccCCCCcEEEEEcccccCCcceeeccCCCC
Q 006934 244 PIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEF-SPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLN 322 (625)
Q Consensus 244 p~~~~~~~Gt~i~l~~~~~~e~~~~~~l~~I~ky-SpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r~~~~~eLdf~~d~~ 322 (625)
... ....||.|.+.+..+ |++- ..|....|.+.+..+.....|..|.+.+-+.. .+..|.
T Consensus 156 ~~~-~~~~GT~V~f~Pd~~-----------~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~---~~~~f~---- 216 (391)
T 1ei1_A 156 TGE-TEKTGTMVRFWPSLE-----------TFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDG---KEDHFH---- 216 (391)
T ss_dssp EEE-CSCCEEEEEEEECTT-----------TCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTC---CEEEEC----
T ss_pred ccC-cCCCccEEEEEEChh-----------hhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCc---ceEEEE----
Confidence 111 145799888765332 1211 22333344455554444468888888765320 000111
Q ss_pred CCCCCCccceeeecccccCCCCCccccCcchhhHHHHHHhhhcCCCeEEEEcCEEecccccccccCcceeecccccceEE
Q 006934 323 GGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSA 402 (625)
Q Consensus 323 ~~~~~~~~DI~i~~~~~~~~~~~~~~~~~~~ySLRaYlsiLYL~P~m~I~LnG~~V~~~~i~~~l~~~~v~~~~~~~~~v 402 (625)
+.-.|++|+..|+-... .+....+ .+.++..+..|
T Consensus 217 -----------------------------~~gGl~~~v~~l~~~~~--------~~~~~~i--------~~~~~~~~i~v 251 (391)
T 1ei1_A 217 -----------------------------YEGGIKAFVEYLNKNKT--------PIHPNIF--------YFSTEKDGIGV 251 (391)
T ss_dssp -----------------------------CCSHHHHHHHHHHHTSC--------BSSSCCE--------EEEEEETTEEE
T ss_pred -----------------------------cCchHHHHHHHHcCCCc--------ccccccE--------EEEEecCCEEE
Confidence 11157788886652210 0000000 01111112345
Q ss_pred EEEEcccccccceecceEEEEEcCceeeee-Eeec------------------------cccccCCCCceEEEEEecCcc
Q 006934 403 HLTLGRCQLEWEQMNCGIFLYWHGRLIEAY-KRVG------------------------GMIHNGDTGRGVIGVIDVSDL 457 (625)
Q Consensus 403 ~it~Gf~~~e~~~~~~Gi~vY~nnRLI~~~-~kvg------------------------~q~~~~~~grGViGVve~~~l 457 (625)
++.+.++. .....++.|.|||-+.-+ -.+- ..+.+..--.|...||.+. +
T Consensus 252 eva~~~~~----~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l~k~~~~~~~~~dvregl~avisvk-i 326 (391)
T 1ei1_A 252 EVALQWND----GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVK-V 326 (391)
T ss_dssp EEEEEEBS----SCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCCCCHHHHTTTEEEEEEEE-C
T ss_pred EEEEEccC----CCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCCccCHHHHhhccEEEEEEe-c
Confidence 55555442 123557899999988643 1110 0000111224778888773 2
Q ss_pred cccCCCceeeccCCCCCCCchHHHHHHHHHHHHHHHHHhhc
Q 006934 458 MDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNK 498 (625)
Q Consensus 458 ~~~~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eYw~~~ 498 (625)
++| .|. ..+|.-.-.+..-..+...+.+.+..|..+|
T Consensus 327 -~~P--~Fe-gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 363 (391)
T 1ei1_A 327 -PDP--KFS-SQTKDKLVSSEVKSAVEQQMNELLAEYLLEN 363 (391)
T ss_dssp -SSC--CBS-STTCCSBCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CCC--CcC-CcccccccCHHHHHHHHHHHHHHHHHHHHHC
Confidence 322 233 4556656666666777788888888887653
No 22
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.22 E-value=8.1e-12 Score=123.11 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=99.0
Q ss_pred ceeeecCH-HHHHHhhcccccCHHHHHHHHHhccccc---C-CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHh
Q 006934 105 KNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV 179 (625)
Q Consensus 105 ~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~DA---~-At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~ 179 (625)
++.||..| +|+-+.+ +..+|.|||+||+|| + |+.|.|.|.. ...|+|.|||.||+.+++.
T Consensus 2 le~vr~rpgmyig~~~------~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~---------~g~i~V~DnG~GIp~~~~~ 66 (201)
T 3fv5_A 2 LEPVRRRPGMYTDTTR------PNHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMPVDIHP 66 (201)
T ss_dssp CHHHHHCGGGTSCTTS------THHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCT
T ss_pred chhhccCCccEECCCC------hhhhhHHHHHHHHHHHhcCCCcEEEEEEeC---------CCEEEEEECCCCcCccccc
Confidence 45666777 7775422 367799999999999 5 9999998852 2389999999999998842
Q ss_pred --------hhhh-cccCCCC--CCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEeCc-c
Q 006934 180 --------RMTY-FGHKQPD--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV-S 247 (625)
Q Consensus 180 --------~~l~-fG~s~k~--~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp~~-~ 247 (625)
-++. .-.+.|- .......|..|+|+.+.. .|+.+++|.|++++. .+.+.|..|...-.++.. .
T Consensus 67 ~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssin-alS~~l~v~t~~~g~----~~~~~~~~G~~~~~~~~~g~ 141 (201)
T 3fv5_A 67 EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN-ALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGT 141 (201)
T ss_dssp TCSSBHHHHHHHCC---------------------CHHHH-HTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEE
T ss_pred ccCcchhheeeeeeccccCcCCCcccccCcccceecchhh-cccceEEEEEEecCc----eEEEEEeCCEEcccceeccc
Confidence 2222 1112221 112346899999995544 489999999998763 245566444322122211 2
Q ss_pred c--CCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 006934 248 Y--YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 307 (625)
Q Consensus 248 ~--~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 307 (625)
. ...||.|.+.+... +++-..|...-|.+.+..+.....|..|.+.+.+
T Consensus 142 ~~~~~~GT~V~f~Pdr~-----------~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r 192 (201)
T 3fv5_A 142 CGKRNTGTSVHFWPDET-----------FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 192 (201)
T ss_dssp CCTTCCEEEEEEEECGG-----------GSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred CCCCCCCeEEEEEECHH-----------HcCCCccCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 2 45799999864321 2222334444445555555545789999998765
No 23
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.12 E-value=7.8e-10 Score=118.37 Aligned_cols=305 Identities=11% Similarity=0.082 Sum_probs=166.4
Q ss_pred ceeeecCH-HHHHHhhcccccCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHh
Q 006934 105 KNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV 179 (625)
Q Consensus 105 ~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~DA----~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~ 179 (625)
+++|+..| +|+-+... ..+..++.||||||+|| +|+.|.|.|.. + ..|+|.|||.||+. |+.
T Consensus 12 lE~vrkRPgmYiGs~~~---~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~-------~--g~I~V~DnGrGIp~-e~v 78 (369)
T 3cwv_A 12 VENVRKRPGMYCGDVGE---YGLHHLVYFLLDVAYEEARRGECRDVVLEVGG-------D--GSIALFCTSRTVTA-ENL 78 (369)
T ss_dssp HHHHHHSTHHHHSCSSH---HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT-------T--SCEEEEEEESSCCH-HHH
T ss_pred hHHHHhCCceEEcCCCC---chHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC-------C--CEEEEEECCCCcCH-hHe
Confidence 66788888 88866532 34788999999999998 79999999862 2 38999999999999 433
Q ss_pred hhhhcccCCCCCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCcc----EEEe---CcccCCCC
Q 006934 180 RMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN----LEIP---IVSYYRKG 252 (625)
Q Consensus 180 ~~l~fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~----i~Vp---~~~~~~~G 252 (625)
-.+.-|.+..........+.-| |.+ +.-.|+..++|.|++.+. .+.+.|..|... -.-| +......|
T Consensus 79 ~~lhagsKf~~~~~~~~y~vsG-Gls-~vnalSs~l~v~t~r~g~----~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~G 152 (369)
T 3cwv_A 79 VRVATGAGFLGRPPGDGWGWDS-MLV-VSLALSSRYQVDIWADGR----QWRVMGEHGHPQGEGAAVTPMEPMPVSAERG 152 (369)
T ss_dssp HHHHTTTTGGGSSCCCSTTTTS-SHH-HHHHTEEEEEEEEEETTE----EEEEEEETTEECTTCEEESSCCCCSSCCSEE
T ss_pred eeeecCCCcCCCcccccccccC-HHH-HHHHhhceEEEEEEECCC----EEEEEEeCCcccccccccCCceEecccCCCC
Confidence 2322222211100001222225 764 444588999999998653 234455444210 0111 11123568
Q ss_pred cEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcccccCCcceeeccCCCCCCCCCCccce
Q 006934 253 QFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDI 332 (625)
Q Consensus 253 t~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r~~~~~eLdf~~d~~~~~~~~~~DI 332 (625)
|.|++.+..+ |++-..|....|.+.+..++....|..|.+.+-+. +.+..|
T Consensus 153 T~V~f~Pd~~-----------~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~---~~~~~f--------------- 203 (369)
T 3cwv_A 153 VRVHFVPDAT-----------IFEVLAFDRARLSRRCNELAALAPGLRVSFADLQR---GERTLW--------------- 203 (369)
T ss_dssp EEEEEEECTT-----------TCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTT---TEEEEE---------------
T ss_pred CEEEEEECHH-----------HhCCccccHHHHHHHHHHHcCcCCCcEEEEEeCCC---CeeEEE---------------
Confidence 9888764322 12112233334455555555446888888876531 000011
Q ss_pred eeecccccCCCCCccccCcchhhHHHHHHhhhcCCCeEEEEcCEEecccccccccCcceeecccccceEEEEEEcccccc
Q 006934 333 LIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLE 412 (625)
Q Consensus 333 ~i~~~~~~~~~~~~~~~~~~~ySLRaYlsiLYL~P~m~I~LnG~~V~~~~i~~~l~~~~v~~~~~~~~~v~it~Gf~~~e 412 (625)
...-.|++|+..|+=... .+....+ .+..+..+..+++.+.++.
T Consensus 204 ------------------~~~gGl~~~v~~l~~~~~--------~~~~~~i--------~~~~~~~~i~ve~a~~~~~-- 247 (369)
T 3cwv_A 204 ------------------HLPGGVAQWAHVLTEARP--------QLHPEPV--------VFDFTWDGLRVQCALQWCE-- 247 (369)
T ss_dssp ------------------ECTTHHHHHHHHHHTTSC--------BSSSSCE--------EEEEEETTEEEEEEEEEBS--
T ss_pred ------------------EeCchHHHHHHHHhcCCc--------ccCCCcE--------EEEEecCCEEEEEEEEecC--
Confidence 111157888887652210 0100111 0111111234555555542
Q ss_pred cceecceEEEEEcCceeeee-------------------EeeccccccCCCCceEEEEEecCcccccCCCceeeccCCCC
Q 006934 413 WEQMNCGIFLYWHGRLIEAY-------------------KRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQG 473 (625)
Q Consensus 413 ~~~~~~Gi~vY~nnRLI~~~-------------------~kvg~q~~~~~~grGViGVve~~~l~~~~~~~~~pthnKQd 473 (625)
.....++.|.|||-+.-+ .+-...+.+..--.|+..||.+. +.+ |...|. ..+|.-
T Consensus 248 --~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k~~~~~l~~~dvregl~avisvk-~~~-P~~~Fe-gQTK~k 322 (369)
T 3cwv_A 248 --DEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAFPWARVAQGLTAIVAVS-GPR-RQMAFA-GPTKEL 322 (369)
T ss_dssp --SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTEEEEEEEE-CCG-GGCCBS-STTCCS
T ss_pred --CCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHhhcCCCcCHHHHhhccEEEEEec-cCC-cchhcc-ccccch
Confidence 123567899999988641 00000111111234778888773 323 211133 356666
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhc
Q 006934 474 FLDCEPYARLEEWLGKVADEYWDNK 498 (625)
Q Consensus 474 Fe~t~~y~~L~~~L~e~l~eYw~~~ 498 (625)
.-........+..+.+.+..|..+|
T Consensus 323 L~~~e~~~~v~~~v~~~l~~~l~~n 347 (369)
T 3cwv_A 323 LAIPGLEEAIRKQLQPLFIELLREH 347 (369)
T ss_dssp BCCTTHHHHHHHHHHHHHHHHHHTC
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 6666777888899999999998764
No 24
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=99.11 E-value=9.5e-11 Score=117.41 Aligned_cols=179 Identities=18% Similarity=0.147 Sum_probs=113.4
Q ss_pred CCCceeeecCH-HHHHHhhcccccCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 102 PLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 102 ~~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~DA----~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
..++++|+..| +|+-+.+. ..+..++.|||+||+|+ .++.|.|.|.. ...|+|.|||.||+.+
T Consensus 19 l~~le~vr~RPgmYiGs~~~---~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~---------~g~i~V~DnG~GIp~~ 86 (226)
T 4emv_A 19 LEGLDAVRKRPGMYIGSTDG---AGLHHLVWEIVDNAVDEALSGFGDRIDVTINK---------DGSLTVQDHGRGMPTG 86 (226)
T ss_dssp CBCTHHHHHCHHHHHSCSSH---HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCS
T ss_pred cchhHHHhhCCceEEcCCCc---ccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC---------CCeEEEEEcCCCcccc
Confidence 45788899999 88876543 23677899999999999 78988888752 2479999999999998
Q ss_pred h-------Hhhhhh-cccCCCC--CCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCC-Cc--cEE-
Q 006934 177 D-------VVRMTY-FGHKQPD--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-KD--NLE- 242 (625)
Q Consensus 177 e-------l~~~l~-fG~s~k~--~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g-~~--~i~- 242 (625)
. +.-+|. +-.+.|- ......-|..|+|.++. -.|+..++|.+++++. .+.+.|..| .. .+.
T Consensus 87 ~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svv-NALS~~l~v~v~r~g~----~~~q~f~~Gg~~~~~l~~ 161 (226)
T 4emv_A 87 MHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV-NALSSWLEVEITRDGA----VYKQRFENGGKPVTTLKK 161 (226)
T ss_dssp BCGGGCBHHHHHHHCBC--------------CGGGCCHHHH-HHTEEEEEEEEEETTE----EEEEEEETTTEESSCSEE
T ss_pred ccccCceehheeEEeecccCccCccceEeccccccccchhh-hhcccceEEEEEeCCc----EEEEEECCCCEEcCCceE
Confidence 8 444443 2122221 12246779999999544 4599999999998764 345666544 21 111
Q ss_pred EeCcccCCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcccc
Q 006934 243 IPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 308 (625)
Q Consensus 243 Vp~~~~~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r 308 (625)
+....-...||.|.+.+..+ |++-..|....|.+.+..++....|.+|.+.+.+.
T Consensus 162 ig~~~~~~~GT~V~F~PD~~-----------iF~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 216 (226)
T 4emv_A 162 IGTALKSKTGTKVTFMPDAT-----------IFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRT 216 (226)
T ss_dssp EEECCTTCCEEEEEEEECTT-----------TCSCCCCCHHHHHHHHHHHHHHHCSCEEEEEETTT
T ss_pred ecccCCCCCCeEEEEEECHH-----------HcCCCCcCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 11111146799998865433 22223344444555555555457999999988753
No 25
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=99.11 E-value=1.1e-10 Score=116.46 Aligned_cols=178 Identities=17% Similarity=0.195 Sum_probs=110.0
Q ss_pred CCCceeeecCH-HHHHHhhcccccCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 102 PLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 102 ~~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~DA----~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
..++++|+..| +|+-+.+.. ..+..++.|||+||+|+ .++.|.|.|.. ...|+|.|||.||+.+
T Consensus 13 l~~le~vr~rPgmYiG~~~~~--~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---------~g~i~V~DnGrGIp~~ 81 (220)
T 4duh_A 13 LKGLDAVRKRPGMYIGDTDDG--TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTG 81 (220)
T ss_dssp --CHHHHHHSTHHHHCCSSSS--HHHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---------TSCEEEEECSSCCCCS
T ss_pred echhHHHHhCCceEECCCCCc--ccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---------CCcEEEEECCcCcccc
Confidence 35678888888 888766432 24788899999999999 89999998862 2479999999999998
Q ss_pred hHh--------hhhh-c--ccCCCCCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCc--cE-E
Q 006934 177 DVV--------RMTY-F--GHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-E 242 (625)
Q Consensus 177 el~--------~~l~-f--G~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~--~i-~ 242 (625)
... -+|. + |.+.........-|..|+|.++. -.|+..++|.+++++. .+.+.|..|.. .+ .
T Consensus 82 ~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svv-NAlS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~ 156 (220)
T 4duh_A 82 IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV-NALSQKLELVIQREGK----IHRQIYEHGVPQAPLAV 156 (220)
T ss_dssp EETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHH-HHTEEEEEEEEEETTE----EEEEEEETTEESSSCEE
T ss_pred cccccCcchhhheeeecccCCCcCCCccccccCccceecchh-cccccceEEEEEECCE----EEEEEecCCcCcCCcee
Confidence 642 2232 1 22211112246779999999544 4499999999998763 34566644421 11 1
Q ss_pred EeCcccCCCCcEEEEEeccchhhhhhhhhhhhcccC-CCchhhHHHHhhhcccCCCCcEEEEEcccc
Q 006934 243 IPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFS-PFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 308 (625)
Q Consensus 243 Vp~~~~~~~Gt~i~l~~~~~~e~~~~~~l~~I~kyS-pF~s~~I~e~~~~~~~~~~GT~IiI~nL~r 308 (625)
++ .-...||.|.+.+..+ |+.-. .|....|.+.+..++....|.+|.+.+.+.
T Consensus 157 ~g--~~~~~GT~V~F~Pd~~-----------~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 210 (220)
T 4duh_A 157 TG--ETEKTGTMVRFWPSLE-----------TFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 210 (220)
T ss_dssp EE--ECSCCEEEEEEEECTT-----------TCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETTT
T ss_pred cc--ccCCCCcEEEEEECHH-----------HhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 22 2246899998865432 12112 344444455555555457999999988753
No 26
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.08 E-value=2.4e-09 Score=115.47 Aligned_cols=177 Identities=15% Similarity=0.126 Sum_probs=106.3
Q ss_pred CCceeeecCH-HHHHHhhcccccCHHHHHHHHHhcccccC----CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhh
Q 006934 103 LEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 177 (625)
Q Consensus 103 ~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~DA~----At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~ee 177 (625)
.++++++..| +|+-+... ......|.|||+||+|+. ++.|.|.+.. ...|+|.|||.||+.++
T Consensus 12 ~~le~vr~rpgmyiGs~~~---~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---------~~~i~V~DnG~GIp~~~ 79 (390)
T 1kij_A 12 KGLEGVRHRPAMYIGGTGV---EGYHHLFKEILDNAVDEALAGYATEILVRLNE---------DGSLTVEDNGRGIPVDL 79 (390)
T ss_dssp CTTHHHHHCTHHHHSCSSH---HHHHHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSE
T ss_pred chhHHHhcCCCcEEccCCc---chHHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---------CCEEEEEEcCCCCCHHH
Confidence 4677788888 77765432 235678999999999995 7888888752 24899999999999999
Q ss_pred Hhh--------hhh-cccCCCC--CCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEe-C
Q 006934 178 VVR--------MTY-FGHKQPD--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-I 245 (625)
Q Consensus 178 l~~--------~l~-fG~s~k~--~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp-~ 245 (625)
+.. +|. |....+- .......|..|+|++.+. .++..+.|.|+..+. .+.+.|..|.....+. .
T Consensus 80 ~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~-als~~~~v~t~~~g~----~~~~~~~~G~~~~~~~~~ 154 (390)
T 1kij_A 80 MPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVN-ALSEWTVVEVFREGK----HHRIAFSRGEVTEPLRVV 154 (390)
T ss_dssp ETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHH-HTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEE
T ss_pred hhhccccchhhheeeeeecccccCccccccCCCCCcceeeec-ccccceEEEEecCCc----EEEEEEcCCcccccceee
Confidence 765 443 2111111 111235689999995554 489999999997652 2344554442111111 1
Q ss_pred ccc--CCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 006934 246 VSY--YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 307 (625)
Q Consensus 246 ~~~--~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 307 (625)
... ..+||.|++.+..+ +++-..|....|.+.+..+.....|..|.+.+.+
T Consensus 155 ~~~~~~~~GT~V~f~Pd~~-----------~F~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~ 207 (390)
T 1kij_A 155 GEAPRGKTGTRVTFKPDPE-----------IFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQ 207 (390)
T ss_dssp EECGGGCCEEEEEEEECHH-----------HHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGG
T ss_pred ccccCCCCCcEEEEEEChH-----------HhCCccccHHHHHHHHHHhcCcCCCcEEEEEeCC
Confidence 122 35788887754221 1111122223334444444434677777776553
No 27
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.04 E-value=2.8e-10 Score=122.69 Aligned_cols=301 Identities=15% Similarity=0.077 Sum_probs=173.4
Q ss_pred CCCceeeecCH-HHHHHhhcccccCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 102 PLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 102 ~~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~DA----~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
..++++|+..| +|+-+.+. ..++.|||+||+|| .|+.|.|.|.. + ..|+|.|||.||+.+
T Consensus 13 L~gle~vr~RPgmYiGs~~~------~~lv~ElvdNsiD~a~~g~a~~I~V~i~~-------~--g~I~V~DnG~GIp~~ 77 (390)
T 1s16_A 13 LTGLEPVRRRPGMYTDTTRP------NHLGQEVIDNSVDEALAGHAKRVDVILHA-------D--QSLEVIDDGRGMPVD 77 (390)
T ss_dssp CCTTHHHHHCGGGTSCTTST------HHHHHHHHHHHHHHHHTTCCSEEEEEECT-------T--SCEEEEECSSCCCCS
T ss_pred cchhHHHhhCCceeecCCcH------HHHHHHHHHHHHHHHhcCCCCEEEEEEec-------C--CEEEEEECCCCcCcc
Confidence 34678888888 78766543 45799999999999 49999998862 2 389999999999998
Q ss_pred h--------Hhhhhh-cccCCC--CCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCccEEEe-
Q 006934 177 D--------VVRMTY-FGHKQP--DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP- 244 (625)
Q Consensus 177 e--------l~~~l~-fG~s~k--~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~Vp- 244 (625)
+ +.-+|. +-.+.| ........|..|+|+.+. -.|+..++|.|++++. .+.+.|..|...-.+.
T Consensus 78 ~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~v-nalS~~l~v~~~r~g~----~~~~~~~~G~~~~~~~~ 152 (390)
T 1s16_A 78 IHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV-NALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQV 152 (390)
T ss_dssp BCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHH-HHTEEEEEEEEEETTE----EEEEEEETTEEEEEEEE
T ss_pred cccccCcchhhheeeeecccCCcCCCcccccCCccccchHHH-HHhhcccEEEEEECCc----EEEEEEeCCccccccee
Confidence 8 444443 222222 111234678999999544 4489999999997652 3445664442111121
Q ss_pred CcccC--CCCcEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEcccccCCcceeeccCCCC
Q 006934 245 IVSYY--RKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLN 322 (625)
Q Consensus 245 ~~~~~--~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r~~~~~eLdf~~d~~ 322 (625)
..... ..||.|.+.+... +++-..|...-|.+.+..+.....|..|.+.+-+. +.+..|.
T Consensus 153 ~g~~~~~~~GT~V~f~Pd~~-----------~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~---~~~~~f~---- 214 (390)
T 1s16_A 153 VGTCGKRNTGTSVHFWPDET-----------FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN---NTEQRWC---- 214 (390)
T ss_dssp EEECCTTCCEEEEEEEECGG-----------GSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT---TEEEEEC----
T ss_pred cccccCCCCceEEEEEECcc-----------ccCcccccHHHHHHHHHHHHhcCCCcEEEEEeCCC---ceeEEEE----
Confidence 12233 5799999875322 12222333334455555555457899998876542 0001111
Q ss_pred CCCCCCccceeeecccccCCCCCccccCcchhhHHHHHHhhhcCCC-e---EEEEcCEEecccccccccCcceeeccccc
Q 006934 323 GGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPR-M---KIYVQGSLVRSRPLAKSLNKTCVETGIIM 398 (625)
Q Consensus 323 ~~~~~~~~DI~i~~~~~~~~~~~~~~~~~~~ySLRaYlsiLYL~P~-m---~I~LnG~~V~~~~i~~~l~~~~v~~~~~~ 398 (625)
+.-.|++|+..|+=... + -|++.| +..
T Consensus 215 -----------------------------~~gGl~~~v~~l~~~~~~~~~~~i~~~~--------------------~~~ 245 (390)
T 1s16_A 215 -----------------------------YQDGLNDYLAEAVNGLPTLPEKPFIGNF--------------------AGD 245 (390)
T ss_dssp -----------------------------CSSCHHHHHHHHHTTSCCEEEEEEEEEE--------------------ECS
T ss_pred -----------------------------cCCcHHHHHHHHhCCCcccCCCcEEEEE--------------------eeC
Confidence 11157888887653211 1 111111 111
Q ss_pred ceEEEEEEcc-cccccceecceEEEEEcCceeeee-Eeec-----------------cccc--cCCC----CceEEEEEe
Q 006934 399 GKSAHLTLGR-CQLEWEQMNCGIFLYWHGRLIEAY-KRVG-----------------GMIH--NGDT----GRGVIGVID 453 (625)
Q Consensus 399 ~~~v~it~Gf-~~~e~~~~~~Gi~vY~nnRLI~~~-~kvg-----------------~q~~--~~~~----grGViGVve 453 (625)
+..|++.+.+ +. .....++.|.|||-+.-+ -.+- +.++ .+.. -.|+..||.
T Consensus 246 ~~~ve~a~~~~~~----~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k~~~~l~~~dvregl~avis 321 (390)
T 1s16_A 246 TEAVDWALLWLPE----GGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLS 321 (390)
T ss_dssp SEEEEEEEEECTT----CCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTCCCCHHHHHTTEEEEEE
T ss_pred CEEEEEEEEeccC----CCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCccCCccCHHHHhhccEEEEE
Confidence 2345555555 22 123457899999988632 1110 0000 0011 137778887
Q ss_pred cCcccccCCCceeeccCCCCCCCchHHHHHHHHHHHHHHHHHhhc
Q 006934 454 VSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNK 498 (625)
Q Consensus 454 ~~~l~~~~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eYw~~~ 498 (625)
+. +++| .|. ..+|.-.-.+.........+.+.+..|..+|
T Consensus 322 vk--i~~P--~Fe-gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 361 (390)
T 1s16_A 322 VK--MQDP--QFA-GQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 (390)
T ss_dssp EE--ESSC--CBS-STTCCCBCCTHHHHHHHHHHHHHHHHHHHTC
T ss_pred ee--cCCC--Ccc-ccccchhcChhHHHHHHHHHHHHHHHHHHHC
Confidence 73 2322 233 4566666666676777888888888887653
No 28
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.93 E-value=3.6e-10 Score=122.01 Aligned_cols=175 Identities=19% Similarity=0.188 Sum_probs=103.6
Q ss_pred CCCceeeecCH-HHHHHhhcccccCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChh
Q 006934 102 PLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 176 (625)
Q Consensus 102 ~~~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~DA----~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~e 176 (625)
..+++.||..| +|+-+.+. ...+.||||||+|+ .++.|.|.|.. ...|+|.|||.||+.+
T Consensus 32 L~glE~VRkRPgMYiGst~~------~hlv~EivdNsiDea~ag~~~~I~V~i~~---------dgsI~V~DnGrGIPv~ 96 (408)
T 3lnu_A 32 LSGLDPVKRRPGMYTDTARP------NHLAQEVIDNSVDEALAGHAKQIEVTLYK---------DGSCEVSDDGRGMPVD 96 (408)
T ss_dssp --CCHHHHHCGGGTSCTTST------HHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCS
T ss_pred ccccHHHhcCCccEECCCCc------chhhHHHHHHHHHHhhcCCCceEEEEEeC---------CCeEEEEEcCCCCCcc
Confidence 46788899988 88876543 45699999999999 78999998852 2489999999999998
Q ss_pred hHh--------hhhh-c--ccCCCCCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCc--cEE-
Q 006934 177 DVV--------RMTY-F--GHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE- 242 (625)
Q Consensus 177 el~--------~~l~-f--G~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~--~i~- 242 (625)
... -+|. + |.+.........-|..|+|.+.. -.|+..++|.+++++. .+.+.|..|.. .+.
T Consensus 97 ~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svV-NALS~~l~v~v~rdGk----~~~q~f~~G~~~~~l~~ 171 (408)
T 3lnu_A 97 IHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVV-NALSTKVELFIKREGS----EHRMEFRDGNAASKLEV 171 (408)
T ss_dssp BCTTTCSBHHHHHHHCC--------------------CHHHH-HHTEEEEEEEEEETTE----EEEEEEETTEECSCCEE
T ss_pred cccccCCcchheEEEecccCCCcCCCceeecCCcccccccee-hhccCeEEEEEEECCE----EEEEEECCCEECCCceE
Confidence 742 2232 1 22111111245779999999544 4599999999998773 35566644421 111
Q ss_pred EeCcccCCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhhHHHHhhhcccCCCCcEEEEEccc
Q 006934 243 IPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 307 (625)
Q Consensus 243 Vp~~~~~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~ 307 (625)
|....-...||.|.+.++.+ |++-..|...-|...++.+.....|..|.+.+.+
T Consensus 172 ig~~~~~~~GT~V~F~PD~~-----------iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~der 225 (408)
T 3lnu_A 172 VGTVGKKNTGTRLRFWADPK-----------YFDTPKFNVRALRHLLRAKAVLCPGLTVKLHDEA 225 (408)
T ss_dssp EEECCTTCCEEEEEEEECGG-----------GSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred eccCcCCCCCcEEEEEECHH-----------HhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEecc
Confidence 11111135799998865432 2332334444455555555545789999988664
No 29
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.87 E-value=1.6e-09 Score=117.04 Aligned_cols=183 Identities=11% Similarity=0.150 Sum_probs=111.6
Q ss_pred CCCceeeecCH-HHHHHhhcc-------------------cccCHHHHHHHHHhcccccC-----CCccEEEEEeceecc
Q 006934 102 PLEKNFVRADP-SYLQTLGQA-------------------HSGWIFGAIAELVDNSRDAK-----ATKLEISIESIYFKK 156 (625)
Q Consensus 102 ~~~~~~v~v~p-~~L~sls~~-------------------~~~~~f~AIaELIdNA~DA~-----At~v~I~i~~~~~~~ 156 (625)
..++++|+..| +|+-+.+.. +...+..++.||||||+||. ++.|.|.|..
T Consensus 9 L~glE~VrkRPgmYiGst~~~~~~~~v~~~~~~~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~----- 83 (400)
T 1zxm_A 9 KTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDP----- 83 (400)
T ss_dssp CCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET-----
T ss_pred cchHHHHHhCCCcEEccCCccccceeeeccccccccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC-----
Confidence 34677888888 888766421 02357889999999999997 7899998872
Q ss_pred CCCCCCEEEEEeCCCCCChhhH--------hhhhh-cccCCCC--CCCCCcccccCceeeeeccccCCeEEEEEEeCCCC
Q 006934 157 AGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPD--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR 225 (625)
Q Consensus 157 ~~~~~~~L~I~DNG~GMt~eel--------~~~l~-fG~s~k~--~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~ 225 (625)
+ ...|+|.|||.||+.++. +-+|. +-.+.|- ....-..|..|+|.++. -.|+..++|.++.....
T Consensus 84 --~-~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvV-nAlS~~l~v~v~~~~~g 159 (400)
T 1zxm_A 84 --E-NNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLC-NIFSTKFTVETASREYK 159 (400)
T ss_dssp --T-TTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHH-HHTEEEEEEEEEETTTT
T ss_pred --C-CCEEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeee-EEeccceEEEEecCCCC
Confidence 1 269999999999999872 22333 1111221 11234779999999544 44999999999874321
Q ss_pred ceeEEEEEecCCCccEEEeC-ccc-CCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhh---HHHHhhhcccCCCCcE
Q 006934 226 SIAFLSQSLNQGKDNLEIPI-VSY-YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYL---IGEKAGLFQDKCTGTQ 300 (625)
Q Consensus 226 s~~~ls~sf~~g~~~i~Vp~-~~~-~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~---I~e~~~~~~~~~~GT~ 300 (625)
..+.+.|..|......+. ... ...||.|.+.+..+ |++-..|.... |.+.+..++....|..
T Consensus 160 --~~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~Pd~~-----------iF~~~ef~~~~~~~l~~rlrelA~lnpgv~ 226 (400)
T 1zxm_A 160 --KMFKQTWMDNMGRAGEMELKPFNGEDYTCITFQPDLS-----------KFKMQSLDKDIVALMVRRAYDIAGSTKDVK 226 (400)
T ss_dssp --EEEEEEEETTTTEECCCEEEECCSCCEEEEEEEECGG-----------GGTCSSCCHHHHHHHHHHHHHHHHHSSSCE
T ss_pred --cEEEEEEccCccccCcceeccCCCCCccEEEEEEChH-----------HhCceeecHHHHHHHHHHHHHHHhhCCCcE
Confidence 223455544422221111 122 34799998875432 11112233322 3444444444468888
Q ss_pred EEEEcc
Q 006934 301 IYIWNL 306 (625)
Q Consensus 301 IiI~nL 306 (625)
|.+.+.
T Consensus 227 i~l~de 232 (400)
T 1zxm_A 227 VFLNGN 232 (400)
T ss_dssp EEETTE
T ss_pred EEEecC
Confidence 877654
No 30
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=98.70 E-value=1.1e-08 Score=110.88 Aligned_cols=181 Identities=11% Similarity=0.137 Sum_probs=111.5
Q ss_pred CCCceeeecCH-HHHHHhhcc--c------------------ccCHHHHHHHHHhcccccC-----CCccEEEEEeceec
Q 006934 102 PLEKNFVRADP-SYLQTLGQA--H------------------SGWIFGAIAELVDNSRDAK-----ATKLEISIESIYFK 155 (625)
Q Consensus 102 ~~~~~~v~v~p-~~L~sls~~--~------------------~~~~f~AIaELIdNA~DA~-----At~v~I~i~~~~~~ 155 (625)
..++++|+..| +|+-+.... | ...+...+.|+||||+|+. ++.|.|.|..
T Consensus 20 L~glE~VrkRPgMYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~---- 95 (418)
T 1pvg_A 20 ISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA---- 95 (418)
T ss_dssp CCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET----
T ss_pred cchhHHHhhCCCceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC----
Confidence 45778888888 888776441 1 1246678999999999985 6889998873
Q ss_pred cCCCCCCEEEEEeCCCCCChhhHhh--------hhh---cccCCCCCCCCCcccccCceeeeeccccCCeEEEEEEe--C
Q 006934 156 KAGKDIPMLSIIDDGHGMTHQDVVR--------MTY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQT--A 222 (625)
Q Consensus 156 ~~~~~~~~L~I~DNG~GMt~eel~~--------~l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~--~ 222 (625)
+...|+|.|||.||+.+.... .|. -|.+.....-.-+-|..|+|. ++.-.|+..++|.++. +
T Consensus 96 ----d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~-SvVNALS~~l~V~v~r~rd 170 (418)
T 1pvg_A 96 ----EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGA-KLCNIFSTEFILETADLNV 170 (418)
T ss_dssp ----TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHH-HHHHHTEEEEEEEEEETTT
T ss_pred ----CCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceee-eeeeeccceEEEEEEECCC
Confidence 126899999999999876432 232 122221112245679999999 4445599999999985 3
Q ss_pred CCCceeEEEEEecCCCccE---EEeCcccCCCCcEEEEEeccchhhhhhhhhhhhcccCCCchhh---HHHHhhhcccCC
Q 006934 223 DSRSIAFLSQSLNQGKDNL---EIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYL---IGEKAGLFQDKC 296 (625)
Q Consensus 223 ~~~s~~~ls~sf~~g~~~i---~Vp~~~~~~~Gt~i~l~~~~~~e~~~~~~l~~I~kySpF~s~~---I~e~~~~~~~~~ 296 (625)
+. .+.+.|..|.... .|........||.|.+.++.+ |+.-..|.... |...+..++...
T Consensus 171 Gk----~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~PD~~-----------iF~~~~f~~d~l~~l~~RlrelA~Ln 235 (418)
T 1pvg_A 171 GQ----KYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLT-----------RFGMKELDNDILGVMRRRVYDINGSV 235 (418)
T ss_dssp TE----EEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECGG-----------GGTCSSCCHHHHHHHHHHHHHHHHHS
T ss_pred Cc----EEEEEEEcCCCccCCCeecccCCCCCceEEEEEEChH-----------HcCCcccCHHHHHHHHHHHHHHHhcC
Confidence 32 4556675442111 121111135799998876543 22222333332 234444444346
Q ss_pred CCcEEEEEcc
Q 006934 297 TGTQIYIWNL 306 (625)
Q Consensus 297 ~GT~IiI~nL 306 (625)
.|.+|.+.+.
T Consensus 236 ~Gl~I~l~de 245 (418)
T 1pvg_A 236 RDINVYLNGK 245 (418)
T ss_dssp TTCEEEETTE
T ss_pred CCCEEEEecc
Confidence 8988887654
No 31
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.68 E-value=2e-08 Score=98.65 Aligned_cols=163 Identities=20% Similarity=0.248 Sum_probs=102.4
Q ss_pred CceeeecCH-HHHHHhhcccccCHHHHHHHHHhccccc---C-CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhH
Q 006934 104 EKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 178 (625)
Q Consensus 104 ~~~~v~v~p-~~L~sls~~~~~~~f~AIaELIdNA~DA---~-At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel 178 (625)
++++|+..| +|+-+.+. ..+...+.|||+||+|+ + ++.|.|.|.. ...|+|.|||.||+.+.-
T Consensus 12 ~le~vr~RPgmYiGs~~~---~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~---------~g~i~V~DnG~Gip~~~h 79 (198)
T 3ttz_A 12 GLEAVRKRPGMYIGSTSE---RGLHHLVWEIVDNSIDEALAGYANQIEVVIEK---------DNWIKVTDNGRGIPVDIQ 79 (198)
T ss_dssp HHHHHHHSHHHHHSCSSH---HHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEG---------GGEEEEEECSSCCCCSBC
T ss_pred chHHHhcCCCcEECCCCC---cchHHHHHHHHHHHHhHHhcCCCcEEEEEEeC---------CCeEEEEECCCCcccccc
Confidence 466788888 88876543 34778899999999994 7 8999999873 238999999999998621
Q ss_pred hhhhhcccCCCCCCCCCcccccCceeeeeccccCCeEEEEEEeCCCCceeEEEEEecCCCc--cE-EEeCcccCCCCcEE
Q 006934 179 VRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-EIPIVSYYRKGQFM 255 (625)
Q Consensus 179 ~~~l~fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~--~i-~Vp~~~~~~~Gt~i 255 (625)
. .+ +. .....+ |+ . ++.-.|+..++|.+++++. .+.+.|..|.. .. .++ .....||.|
T Consensus 80 ~------~~-~~-~~~e~i--~t--~-SvVNALS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~i~--~~~~~GT~V 140 (198)
T 3ttz_A 80 E------KM-GR-PAVEVI--LT--S-SVVNALSQDLEVYVHRNET----IYHQAYKKGVPQFDLKEVG--TTDKTGTVI 140 (198)
T ss_dssp T------TT-SS-BHHHHH--HH--T-CHHHHTEEEEEEEEEETTE----EEEEEEETTEESSCCEEEE--ECSCCEEEE
T ss_pred C------cC-CC-cccccc--ce--e-EehhhhcCeEEEEEEECCc----EEEEEEeCCEECCCceecc--CCCCCCcEE
Confidence 1 00 00 000111 22 2 3333578899999998774 34556644421 11 122 224689999
Q ss_pred EEEeccchhhhhhhhhhhhc-ccCCCchhhHHHHhhhcccCCCCcEEEEEcccc
Q 006934 256 ELDTVVQSEATAKYNLKSIK-EFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 308 (625)
Q Consensus 256 ~l~~~~~~e~~~~~~l~~I~-kySpF~s~~I~e~~~~~~~~~~GT~IiI~nL~r 308 (625)
.+.+... |+ +-.-|...-|.+.++.++....|.+|.+.+.+.
T Consensus 141 ~F~Pd~~-----------iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 183 (198)
T 3ttz_A 141 RFKADGE-----------IFTETTVYNYETLQQRIRELAFLNKGIQITLRDERD 183 (198)
T ss_dssp EEEECTT-----------TCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECSS
T ss_pred EEEECHH-----------HhccCCccCHHHHHHHHHHHhhcCCCCEEEEEeecC
Confidence 8865432 22 223344444555555555557999999998753
No 32
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.42 E-value=4.1e-07 Score=100.24 Aligned_cols=96 Identities=22% Similarity=0.354 Sum_probs=67.3
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCCCCCCCCccc
Q 006934 125 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 198 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA~At-----~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG 198 (625)
.+..+|.|||+||+||.+. .|.|.+... ....+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~---~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 107 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLI---DDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 107 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEE---ETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEC---CCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc-ccccCCC
Confidence 4678999999999999876 677777531 0012456899999999999999999875 4343332 1234568
Q ss_pred ccCceeeeecc---ccCCe-EEEEEEeCCC
Q 006934 199 RFGVGFKTGAM---RLGKD-ALVLTQTADS 224 (625)
Q Consensus 199 ~fGvGfKsA~~---~lg~~-v~V~Sk~~~~ 224 (625)
..|+|+..+.. ..+.+ +.|.|+..+.
T Consensus 108 g~GLGL~iv~~l~~~~gG~~i~v~S~~~~g 137 (471)
T 1mu5_A 108 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 137 (471)
T ss_dssp SCTTTHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CceeeHHHHHHHHHHhCCCceeEEEecCCC
Confidence 89999965432 23444 9999987654
No 33
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.37 E-value=6.2e-07 Score=100.11 Aligned_cols=96 Identities=22% Similarity=0.354 Sum_probs=68.3
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCCCCCCCCccc
Q 006934 125 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 198 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA~At-----~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG 198 (625)
.+..+|.|||+||+||.+. .|.|.+... ....+...|+|.|||.||+.+++..+|. |..+.+. ......|
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~---~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 106 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLI---DDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 106 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEE---ETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEEC---CCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc-ccccCCC
Confidence 3678899999999999876 788887641 0012456899999999999999998875 4343332 1235678
Q ss_pred ccCceeeeecc---ccCCe-EEEEEEeCCC
Q 006934 199 RFGVGFKTGAM---RLGKD-ALVLTQTADS 224 (625)
Q Consensus 199 ~fGvGfKsA~~---~lg~~-v~V~Sk~~~~ 224 (625)
..|+|+..+.. ..+.. +.|.|+..+.
T Consensus 107 g~GLGLsiv~~l~~~~gG~~I~V~S~~~~g 136 (530)
T 2zbk_B 107 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 136 (530)
T ss_dssp SSSSHHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CccchHHHHHHHHHHhCCCceEEEEecCCC
Confidence 89999965432 23444 9999987654
No 34
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.32 E-value=4.8e-07 Score=102.59 Aligned_cols=131 Identities=16% Similarity=0.254 Sum_probs=77.0
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhh-cccCCCCCCCCCccc
Q 006934 125 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 198 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA~At-----~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~-fG~s~k~~~~~~~IG 198 (625)
.+..+|.|||+||+||.++ .|.|.+... +.+...|+|.|||.||+.+++..+|. |..+.+-.......|
T Consensus 37 ~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~-----~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~G 111 (621)
T 2q2e_B 37 SLITTVKEAVDNALDACEEAGILPDILVQVERT-----GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRG 111 (621)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-----TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-----CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCC
Confidence 3677899999999999775 677766531 11345799999999999999999874 322222111224458
Q ss_pred ccCceeeeecc---ccCCe-EEEEEEeCCCCceeEEEEEe--cCCCccE--EEeCcccCCCCcEEEEEec
Q 006934 199 RFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSL--NQGKDNL--EIPIVSYYRKGQFMELDTV 260 (625)
Q Consensus 199 ~fGvGfKsA~~---~lg~~-v~V~Sk~~~~~s~~~ls~sf--~~g~~~i--~Vp~~~~~~~Gt~i~l~~~ 260 (625)
..|+|+..+.. .++.. +.|.|+..+......+...+ ..+.... .-+...-..+||.|.+.++
T Consensus 112 g~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~f~ 181 (621)
T 2q2e_B 112 QQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELEMR 181 (621)
T ss_dssp SSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEECS
T ss_pred CceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEEec
Confidence 89999965432 12233 68999876532222222222 1222222 1111122347999988753
No 35
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.66 E-value=8.6e-05 Score=67.10 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCceee
Q 006934 126 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 205 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGfK 205 (625)
+..++.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+.+....+.+.. -+..|+|+.
T Consensus 45 l~~il~nLl~NAi~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~-----~~g~GlGL~ 113 (152)
T 1id0_A 45 FVEVMGNVLDNACKYCLEFVEISARQ------TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL-----RPGQGVGLA 113 (152)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEEE------CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-----CTTCCSCHH
T ss_pred HHHHHHHHHHHHHHhCcCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-----CCCcccCHH
Confidence 45679999999999987777777653 3456689999999999999998887543333211 135688875
Q ss_pred eec---cccCCeEEEEEEe
Q 006934 206 TGA---MRLGKDALVLTQT 221 (625)
Q Consensus 206 sA~---~~lg~~v~V~Sk~ 221 (625)
.+- -.+|.++.+.+..
T Consensus 114 i~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 114 VAREITEQYEGKIVAGESM 132 (152)
T ss_dssp HHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHcCCEEEEEeCC
Confidence 332 1356666666543
No 36
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.56 E-value=0.0001 Score=67.62 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCceee
Q 006934 126 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 205 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGfK 205 (625)
+..+|.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+.+...++.+.. ...+..|+|++
T Consensus 48 l~~il~nll~NAik~~~~~I~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~---~~~~g~GlGL~ 118 (161)
T 1bxd_A 48 IKRAVANMVVNAARYGNGWIKVSSGT------EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA---RTISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEEEE------ETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC---CCCCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC---CCCCCcccCHH
Confidence 45669999999999987788888764 2345679999999999999998887533333221 11245788885
Q ss_pred eec---cccCCeEEEEEEe
Q 006934 206 TGA---MRLGKDALVLTQT 221 (625)
Q Consensus 206 sA~---~~lg~~v~V~Sk~ 221 (625)
.+- -.++.++.+.+..
T Consensus 119 i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 119 IVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp TTHHHHHHHTSEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 432 1346777776653
No 37
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=97.46 E-value=6.2e-05 Score=90.92 Aligned_cols=151 Identities=13% Similarity=0.134 Sum_probs=90.9
Q ss_pred cCCCCceeeecCH-HHHHHhhcc-c-------------------ccCHHHHHHHHHhccccc---C--CCccEEEEEece
Q 006934 100 AGPLEKNFVRADP-SYLQTLGQA-H-------------------SGWIFGAIAELVDNSRDA---K--ATKLEISIESIY 153 (625)
Q Consensus 100 ~~~~~~~~v~v~p-~~L~sls~~-~-------------------~~~~f~AIaELIdNA~DA---~--At~v~I~i~~~~ 153 (625)
..-.++++|+..| +||-+..+. + ...+...+.|+||||+|. + .+.|.|.|..
T Consensus 13 q~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~-- 90 (1177)
T 4gfh_A 13 QKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA-- 90 (1177)
T ss_dssp EECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--
T ss_pred cccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCeEEEEEEC--
Confidence 3345788899999 898876432 0 113667789999999994 3 2568888762
Q ss_pred eccCCCCCCEEEEEeCCCCCChhhH--------hhhhh---cccCCCCCCCCCcccccCceeeeeccccCCeEEEEEEeC
Q 006934 154 FKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY---FGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA 222 (625)
Q Consensus 154 ~~~~~~~~~~L~I~DNG~GMt~eel--------~~~l~---fG~s~k~~~~~~~IG~fGvGfKsA~~~lg~~v~V~Sk~~ 222 (625)
....|+|.|||.||+-+.- +-+|. -|.+.....-.-+-|..|||.+ +.-.|+.++.|.+...
T Consensus 91 ------~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~s-vVNALS~~~~vev~~~ 163 (1177)
T 4gfh_A 91 ------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAK-LCNIFSTEFILETADL 163 (1177)
T ss_dssp ------TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHH-HHHHTEEEEEEEEEET
T ss_pred ------CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhh-HHhhcCCceEEEEEEE
Confidence 2568999999999986421 11222 1222111122445699999984 4444888887766422
Q ss_pred CCCceeEEEEEecCCCccEEEeC---cccCCCCcEEEEEecc
Q 006934 223 DSRSIAFLSQSLNQGKDNLEIPI---VSYYRKGQFMELDTVV 261 (625)
Q Consensus 223 ~~~s~~~ls~sf~~g~~~i~Vp~---~~~~~~Gt~i~l~~~~ 261 (625)
.. ...+.+.|..|......|. ......||+|.+.++.
T Consensus 164 r~--Gk~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F~PD~ 203 (1177)
T 4gfh_A 164 NV--GQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDL 203 (1177)
T ss_dssp TT--TEEEEEEEETTTTEECCCEEEECCSSCCCEEEEEEECH
T ss_pred cC--CEEEEEEEECCcccCCCCeeecCCCCCCceEEEEEeCH
Confidence 11 1234566755533222222 1223468999887643
No 38
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.34 E-value=0.00022 Score=70.43 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCccccc
Q 006934 126 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 200 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At-----~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~f 200 (625)
+..+|..||+||+++... .|.|.+.. ..+.-.|.|.|||.||+++++.++|...++.+.. .....+-.
T Consensus 139 l~~il~NLl~NAik~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~ 211 (258)
T 2c2a_A 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDE------KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS-LTYEVPGT 211 (258)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE------ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC----------C
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEEEEec------CCCeEEEEEEecCCCCCHHHHHhhccccccCCCC-CCCCCCCc
Confidence 456799999999998532 35555542 2345678999999999999999888533332211 11122346
Q ss_pred Cceeeeec---cccCCeEEEEEEe
Q 006934 201 GVGFKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 201 GvGfKsA~---~~lg~~v~V~Sk~ 221 (625)
|+|+..+- -..|.++.|.|..
T Consensus 212 GLGL~i~~~iv~~~gG~i~v~s~~ 235 (258)
T 2c2a_A 212 GLGLAITKEIVELHGGRIWVESEV 235 (258)
T ss_dssp CCTHHHHHHHHHHTTCEEEEEEET
T ss_pred chHHHHHHHHHHHcCCEEEEEecC
Confidence 88875321 1357777777754
No 39
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.31 E-value=0.00024 Score=64.32 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCccccc
Q 006934 126 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 200 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A-----t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~f 200 (625)
+..+|.|||+||+.++. ..|.|.+.. ..+.-.|.|.|||.||+ ++.+.+...++.+. ..+..
T Consensus 40 l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~-----~~~~~ 106 (145)
T 1th8_A 40 IKTVVSEAVTNAIIHGYNNDPNGIVSISVII------EDGVVHLTVRDEGVGIP--DIEEARQPLFTTKP-----ELERS 106 (145)
T ss_dssp HHHHHHHHHHHHHHTTSTTCTTSEEEEEEEE------ETTEEEEEEEECSSCCS--CHHHHTCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------eCCEEEEEEEECCCCcC--hHHHhhcccccCCC-----CCCCC
Confidence 56789999999998863 456666653 24456899999999999 66666643333221 11335
Q ss_pred CceeeeeccccCCeEEEEEE
Q 006934 201 GVGFKTGAMRLGKDALVLTQ 220 (625)
Q Consensus 201 GvGfKsA~~~lg~~v~V~Sk 220 (625)
|+|+..+- ++.+.+.+.+.
T Consensus 107 GlGL~iv~-~~~~~i~~~~~ 125 (145)
T 1th8_A 107 GMGFTIME-NFMDEVIVESE 125 (145)
T ss_dssp SCHHHHHH-HHSSEEEEEEE
T ss_pred cchHHHHH-HHHheEEEEeC
Confidence 88885443 34556665554
No 40
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.27 E-value=0.00022 Score=76.33 Aligned_cols=90 Identities=14% Similarity=0.269 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCC----
Q 006934 126 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 192 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A---------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~---- 192 (625)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.++|...++.+...
T Consensus 244 L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~ 317 (407)
T 2q8g_A 244 LYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL------GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVET 317 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccc
Confidence 45669999999999843 258887763 34566799999999999999999987544433210
Q ss_pred -CCCcccccCceeeeec---cccCCeEEEEEEe
Q 006934 193 -DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 193 -~~~~IG~fGvGfKsA~---~~lg~~v~V~Sk~ 221 (625)
.....+-+|+|+..+- -..|.++.|.|..
T Consensus 318 ~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~ 350 (407)
T 2q8g_A 318 SRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLE 350 (407)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcC
Confidence 1234567899985332 1357777777754
No 41
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.26 E-value=0.00034 Score=63.23 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcccccCCC-ccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCcee
Q 006934 126 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 204 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At-~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGf 204 (625)
+..+|.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+.+++.+++...+.... ..-+..|+|+
T Consensus 47 l~~il~nLl~NA~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~----~~~~g~GlGL 116 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHGGATLVQLSAVS------SRAGVEIAIDDNGSGVPEGERQVVFERFSRGST----ASHSGSGLGL 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEEE------ETTEEEEEEEESSSCCCGGGHHHHHTSCC---------------CCC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCCCCHHHHHHHhcccccCCC----CCCCCCCcCH
Confidence 456699999999998643 55555543 234567999999999999999988753332111 1123468887
Q ss_pred eeec---cccCCeEEEEEE
Q 006934 205 KTGA---MRLGKDALVLTQ 220 (625)
Q Consensus 205 KsA~---~~lg~~v~V~Sk 220 (625)
..+- -.+|.++.+.+.
T Consensus 117 ~i~~~~~~~~gG~i~~~~~ 135 (150)
T 1ysr_A 117 ALVAQQAQLHGGTASLENS 135 (150)
T ss_dssp HHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEeec
Confidence 5332 135666666664
No 42
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.20 E-value=0.00022 Score=64.05 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~--At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..+|.+||+||+.+. ...|.|.+.. ..+.-.|.|.|||.||+.+++.+.+....+.+. +..|+|
T Consensus 48 l~~il~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~-------~g~GlG 114 (152)
T 3a0y_A 48 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLG 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEE------CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC---------CCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC-------CCCCcC
Confidence 4566999999999985 4566766653 344668999999999999999888754333221 246888
Q ss_pred eeeec--c--ccCCeEEEEEE
Q 006934 204 FKTGA--M--RLGKDALVLTQ 220 (625)
Q Consensus 204 fKsA~--~--~lg~~v~V~Sk 220 (625)
++.+- + ..|..+.+.+.
T Consensus 115 L~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 115 LSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp HHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCcEEEEecC
Confidence 86431 2 35777766654
No 43
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.18 E-value=0.00029 Score=75.14 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCC-----
Q 006934 126 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA----- 191 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A---------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~----- 191 (625)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.++|...++.+..
T Consensus 231 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~ 304 (394)
T 2e0a_A 231 LHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL------GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDN 304 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE------CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC----
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe------CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCc
Confidence 45669999999999842 258887763 3456689999999999999999998754443321
Q ss_pred CCCCcccccCceeeeec---cccCCeEEEEEEe
Q 006934 192 DDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 192 ~~~~~IG~fGvGfKsA~---~~lg~~v~V~Sk~ 221 (625)
......+-+|+|+..+- -..|.++.|.|..
T Consensus 305 ~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 305 SRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp --CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 01223466889985332 1357777777754
No 44
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.13 E-value=0.00021 Score=75.87 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcccccCC----------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCC---
Q 006934 126 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD--- 192 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A----------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~--- 192 (625)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|||.||+++++.++|...++.+...
T Consensus 239 L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~ 312 (388)
T 1gkz_A 239 LDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQD 312 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC------
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccc
Confidence 56789999999999842 168887763 34566799999999999999999886444333210
Q ss_pred ----------------CCCcccccCceeeeec---cccCCeEEEEEEe
Q 006934 193 ----------------DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 193 ----------------~~~~IG~fGvGfKsA~---~~lg~~v~V~Sk~ 221 (625)
.....+.+|+|+..+- -..|.++.|.|..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~ 360 (388)
T 1gkz_A 313 PRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ 360 (388)
T ss_dssp -------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 0123356788885332 2357788887754
No 45
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.12 E-value=0.00061 Score=67.28 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A--t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..+|.+||+||+++.. ..|.|.+.. ..+.-.|.|.|||.||+.+++.+.+...++.+. +..|+|
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-------~g~GlG 222 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARR------ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-------GGPGLG 222 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEE------CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS-------CCCTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEe------cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-------CCCccc
Confidence 45679999999999865 456666653 345678999999999999999888754333221 345888
Q ss_pred eeeec---cccCCeEEEEEEe
Q 006934 204 FKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 204 fKsA~---~~lg~~v~V~Sk~ 221 (625)
++.+- -.+|..+.|.+..
T Consensus 223 L~i~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 223 LALVKALVELHGGWVALESEP 243 (268)
T ss_dssp HHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 75332 2457777776643
No 46
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.12 E-value=0.00027 Score=75.27 Aligned_cols=90 Identities=14% Similarity=0.288 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCC----
Q 006934 126 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 192 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A---------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~---- 192 (625)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.++|...++.+...
T Consensus 232 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~ 305 (394)
T 2btz_A 232 LYHMLFELFKNAMRATVESHESSLILPPIKVMVAL------GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGT 305 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe------CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCccc
Confidence 45669999999999842 248887763 34466899999999999999999987544433210
Q ss_pred CCCcccccCceeeeec---cccCCeEEEEEEe
Q 006934 193 DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 193 ~~~~IG~fGvGfKsA~---~~lg~~v~V~Sk~ 221 (625)
.....+.+|+|+..+- -..|.++.|.|..
T Consensus 306 ~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2btz_A 306 GGTPLAGFGYGLPISRLYAKYFQGDLQLFSME 337 (394)
T ss_dssp --------CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 1223456889985332 2357777777754
No 47
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.12 E-value=0.00045 Score=64.42 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A--t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..+|.+||+||+++.. ..+.|.+... ...+.-.|.|.|||.||+.+++..++...++.... .....+..|+|
T Consensus 44 l~~il~nLl~NAi~~~~~~~~i~I~i~~~----~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~-~~~~~~g~GlG 118 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPEGGHVTFSIDVN----EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKA-RTRKLGGTGLG 118 (177)
T ss_dssp HHHHHHHHHHHHHHTCCTTCCEEEEEEEE----TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------CCCCCCH
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEc----cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCC-CCCCCCCCCcC
Confidence 44569999999999864 4456665321 13445678999999999999998887533332211 12223456888
Q ss_pred eeeec---cccCCeEEEEEEe
Q 006934 204 FKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 204 fKsA~---~~lg~~v~V~Sk~ 221 (625)
++.+- -.++.++.+.+..
T Consensus 119 L~iv~~~~~~~~G~i~i~~~~ 139 (177)
T 3sl2_A 119 LAIAKEMVQAHGGDIWADSIE 139 (177)
T ss_dssp HHHHHHHHHHTTCCEEEEEET
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 76432 2356777776654
No 48
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.11 E-value=0.00015 Score=68.42 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcccccC--------------CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhH
Q 006934 126 IFGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 178 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~--------------At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel 178 (625)
+..+|.+||+||+.+. ...|.|.+.. ..+.-.|.|.|||.||+.+++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~ 108 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKI 108 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEE------ETTEEEEEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHH
Confidence 4566999999999985 3456666653 244668999999999999987
No 49
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.10 E-value=0.00028 Score=76.06 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcccccCC----------CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCC----
Q 006934 126 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA---- 191 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A----------t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~---- 191 (625)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.++|...++.+..
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~ 327 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL------GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcc
Confidence 45669999999999843 258887763 3446689999999999999999998644433321
Q ss_pred -CCCCcccccCceeeeec---cccCCeEEEEEEe
Q 006934 192 -DDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 192 -~~~~~IG~fGvGfKsA~---~~lg~~v~V~Sk~ 221 (625)
......+-+|+|+..+- -..|.++.|.|..
T Consensus 328 ~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 328 PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp -----CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 01223456899985332 1357777777754
No 50
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.08 E-value=0.00027 Score=67.41 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCceee
Q 006934 126 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 205 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvGfK 205 (625)
+..+|.+||+||+.+......|.|... ...|.|.|||.||+.+++.+.+...++.+. ...+..|+|+.
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~--------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLN--------ADNFIVRDNGPGVTPEALARIGERFYRPPG----QTATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEEC--------SSEEEEECSCC------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEc--------cCeEEEEECCCCCCHHHHHHHHhhhccCCC----CCCCcccccHH
Confidence 456799999999999755544555421 122999999999999999888753333221 11234688875
Q ss_pred eec---cccCCeEEEEE
Q 006934 206 TGA---MRLGKDALVLT 219 (625)
Q Consensus 206 sA~---~~lg~~v~V~S 219 (625)
.+- -..|.++.|.|
T Consensus 186 i~~~i~~~~gG~i~i~s 202 (222)
T 3jz3_A 186 IVQRIAKLHGMNVEFGN 202 (222)
T ss_dssp HHHHHHHHTTCEEECCB
T ss_pred HHHHHHHHcCCEEEEEc
Confidence 332 12444444444
No 51
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.00 E-value=0.00071 Score=65.42 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~--At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..+|.+||+||+.+. ...|.|.+.. ..+.-.|.|.|||.||+.+++.+.+...++.+ ..+..|+|
T Consensus 124 l~~il~nLl~NA~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~------~~~g~GlG 191 (244)
T 3d36_A 124 FRQCLLNVMKNAIEAMPNGGTLQVYVSI------DNGRVLIRIADTGVGMTKEQLERLGEPYFTTK------GVKGTGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEEEEEE------ETTEEEEEEEECSSCCCHHHHHHTTSTTCCSS------GGGCCSCH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEEE------eCCEEEEEEEecCCCCCHHHHHHHhcccccCC------CCCCcchh
Confidence 5677999999999986 3456666653 34566899999999999999988875444322 12346888
Q ss_pred eeeec---cccCCeEEEEEEe
Q 006934 204 FKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 204 fKsA~---~~lg~~v~V~Sk~ 221 (625)
+..+- -.+|..+.+.+..
T Consensus 192 L~i~~~i~~~~gG~i~~~~~~ 212 (244)
T 3d36_A 192 MMVVYRIIESMNGTIRIESEI 212 (244)
T ss_dssp HHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 75432 2357777777753
No 52
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.92 E-value=0.0002 Score=64.87 Aligned_cols=89 Identities=12% Similarity=0.130 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcccccC---CCccEEEEEeceeccC----CCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCccc
Q 006934 126 IFGAIAELVDNSRDAK---ATKLEISIESIYFKKA----GKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 198 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~---At~v~I~i~~~~~~~~----~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG 198 (625)
+..+|.+||+||+.+. ...|.|.+....+... ....-.|.|.|||.||+.+++.+.+...++.+. +
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-------~ 121 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-------G 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------C
Confidence 4566999999999975 4566666653110000 001457899999999999999888753333221 3
Q ss_pred ccCceeeeec---cccCCeEEEEEEe
Q 006934 199 RFGVGFKTGA---MRLGKDALVLTQT 221 (625)
Q Consensus 199 ~fGvGfKsA~---~~lg~~v~V~Sk~ 221 (625)
..|+|++.+- -.+|.++.+.+..
T Consensus 122 g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 122 GTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 4688875332 2457777777654
No 53
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.82 E-value=0.00062 Score=60.40 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhH
Q 006934 126 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 178 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~-At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel 178 (625)
++.++.|||+||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++++
T Consensus 41 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEE------eCCEEEEEEEECCcCcCcccC
Confidence 4667999999999874 5678887764 344568999999999998764
No 54
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.80 E-value=0.001 Score=70.87 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcccccC------------C--CccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhH-------------
Q 006934 126 IFGAIAELVDNSRDAK------------A--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV------------- 178 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~------------A--t~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel------------- 178 (625)
+..++.+||.||++++ . ..|.|.+.. .++.-.|.|.|||.||+++.+
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~------~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~ 180 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 180 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE------ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCST
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChh
Confidence 3556999999999996 2 346665543 344668999999999999987
Q ss_pred -----------hhhhhcccCCCCCCCCCcccccCceeeee---ccccCCeEEEEEEe
Q 006934 179 -----------VRMTYFGHKQPDADDPNRIGRFGVGFKTG---AMRLGKDALVLTQT 221 (625)
Q Consensus 179 -----------~~~l~fG~s~k~~~~~~~IG~fGvGfKsA---~~~lg~~v~V~Sk~ 221 (625)
...|..+++.+.. ....+-.|+|+..+ .-.+|..+.|.|..
T Consensus 181 ~~~~~~~~~~~~~iF~p~fst~~~--~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~ 235 (379)
T 1b3q_A 181 KAATLSDQEILNFLFVPGFSTKEK--VSEVSGRGVGMDVVKNVVESLNGSMGIESEK 235 (379)
T ss_dssp TTTTSCTHHHHSGGGSTTCC-------------CCCSHHHHHHHHHTTCEEEEEEET
T ss_pred hhhcCCHHHHHHHhcCCCCccCCc--cCCCCCccccHHHHHHHHHHCCCEEEEEEcC
Confidence 3345444544421 22345578898532 22467888888764
No 55
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.74 E-value=0.0011 Score=67.76 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 126 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~--At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
+..+|.+||+||+++. +..|.|.+.. ..+.-.|.|.|||.||+++++.+.|...++.+. +..|+|
T Consensus 245 l~~vl~nLl~NA~k~~~~~~~i~i~~~~------~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-------~g~GlG 311 (349)
T 3a0r_A 245 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLG 311 (349)
T ss_dssp HHHHHHHHHTHHHHTTCTTCCEEEEEEE------ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-------------CC
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEEEe------cCCEEEEEEEECCCCCChHHHhhcCCCCccCCC-------CCccch
Confidence 5678999999999986 4567777653 344668999999999999999888764443331 235888
Q ss_pred eeeec--c--ccCCeEEEEEE
Q 006934 204 FKTGA--M--RLGKDALVLTQ 220 (625)
Q Consensus 204 fKsA~--~--~lg~~v~V~Sk 220 (625)
+..+- + ..|..+.+.+.
T Consensus 312 L~i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 312 LSICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp CTHHHHHHHHTTCSBCCEEEC
T ss_pred HHHHHHHHHHhCCCEEEEEeC
Confidence 75321 1 35666666553
No 56
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.50 E-value=0.0028 Score=55.53 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccccCce
Q 006934 125 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 203 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA~-At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~fGvG 203 (625)
.+..++.+||+||+.+. +..|.|.+.. ..+ -.|.|.|||.||+.+. .|+|
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~----------------------~GlG 93 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKV------DDD-LCIEVTDNGRGMPDEF----------------------TGSG 93 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEE------SSE-EEEEEEECCCCCTTTT----------------------CSHH
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEE------cCC-EEEEEecCCCCCCccc----------------------CCcC
Confidence 36778999999999986 6778887764 344 7899999999998765 3888
Q ss_pred eeeec---cccCCeEEEEEEeC
Q 006934 204 FKTGA---MRLGKDALVLTQTA 222 (625)
Q Consensus 204 fKsA~---~~lg~~v~V~Sk~~ 222 (625)
+..+. -.++.++.+.+...
T Consensus 94 L~i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 94 LTNLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHcCCEEEEeeCCC
Confidence 75322 13566666666443
No 57
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.19 E-value=0.0027 Score=60.61 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhH
Q 006934 126 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 178 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~-At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel 178 (625)
++.++.|||+||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++.+
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------eCCEEEEEEEECCcCCCCCCC
Confidence 4567999999999874 4677777763 344668999999999999775
No 58
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.12 E-value=0.0043 Score=54.06 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhh
Q 006934 126 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 177 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~-At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~ee 177 (625)
+..++.||++||+.+. +..|.|.+.. ..+ -.|.|.|||.||+++.
T Consensus 40 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 40 AEAVLREAVSNAVRHANATSLAINVSV------EDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEEEE------EEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEe------CCC-EEEEEEECCCCCCccc
Confidence 5678999999999975 4577777763 233 7899999999999876
No 59
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=92.37 E-value=0.016 Score=67.60 Aligned_cols=46 Identities=41% Similarity=0.859 Sum_probs=37.0
Q ss_pred CceecCc--chhhhhccCCCCC-CCCCCCCccccCCCC-------CCCCCCCcccc
Q 006934 515 QEWVQCN--KCRKWRMLDPGFD-TKSLPVEWFCYMKPF-------EGLCDLPEQKV 560 (625)
Q Consensus 515 ~~WvQCd--~C~KWR~lp~~~~-~~~~p~~W~C~~n~~-------~~~C~~pEe~~ 560 (625)
.-||||- .|.|||+||.... ...++.+..|.|-++ ...|+.||+.-
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 146 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLR 146 (776)
T ss_dssp CCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCCC-------CCGGGSCCCHH
T ss_pred cHhhhcCcccccchhhCCCcCCCChhhhheeeccCccCcccccccCCCCCCCcccc
Confidence 4899998 9999999998865 355788999998642 36799999843
No 60
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=92.09 E-value=0.1 Score=51.63 Aligned_cols=82 Identities=9% Similarity=-0.090 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCCCEEEEEeCCCC--CChhhHhhhhhcccCCCCCCCCCcccccC
Q 006934 126 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHG--MTHQDVVRMTYFGHKQPDADDPNRIGRFG 201 (625)
Q Consensus 126 ~f~AIaELIdNA~DA~A--t~v~I~i~~~~~~~~~~~~~~L~I~DNG~G--Mt~eel~~~l~fG~s~k~~~~~~~IG~fG 201 (625)
...++.-||+||++|.. ..|.|.+.. ..+.-.|.|.|+|.| |+++.+...+.-..+. ..+-.|
T Consensus 147 ~~qvl~NLl~NA~~a~~~gg~I~v~~~~------~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~-------~~~G~G 213 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAGGVATVKGVA------ADGRFSIIADAKGPRARLRPEVLAGLKGEPLAE-------GLGGPW 213 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEEEEE------ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCS-------SCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCC-------CCCCcc
Confidence 45678899999999954 356666653 345678999999987 5555455554311111 122348
Q ss_pred ceeeeec---cccCCeEEEEEE
Q 006934 202 VGFKTGA---MRLGKDALVLTQ 220 (625)
Q Consensus 202 vGfKsA~---~~lg~~v~V~Sk 220 (625)
+|+..+- -..|.++.|.|.
T Consensus 214 LGLai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 214 VQAAYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEEc
Confidence 8875321 235777777664
No 61
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=91.95 E-value=0.063 Score=43.51 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=24.9
Q ss_pred CCceecCcchhhhhccC-CCCCCCCCCCCcccc
Q 006934 514 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 545 (625)
Q Consensus 514 ~~~WvQCd~C~KWR~lp-~~~~~~~~p~~W~C~ 545 (625)
...+||||.|..|-.+. .++.....|+.|+|.
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECC
Confidence 45799999999998876 344444678999995
No 62
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=90.98 E-value=0.065 Score=40.91 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=24.9
Q ss_pred CCceecCcchhhhhccC-CCCCCCCCCCCcccc
Q 006934 514 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 545 (625)
Q Consensus 514 ~~~WvQCd~C~KWR~lp-~~~~~~~~p~~W~C~ 545 (625)
...+||||.|..|-.+. .++.....|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 45899999999998877 344444678999985
No 63
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.67 E-value=0.12 Score=41.00 Aligned_cols=34 Identities=18% Similarity=0.448 Sum_probs=23.4
Q ss_pred CCCceecCcchhhhhccCC-CCCC--CCCCCCccccC
Q 006934 513 PDQEWVQCNKCRKWRMLDP-GFDT--KSLPVEWFCYM 546 (625)
Q Consensus 513 ~~~~WvQCd~C~KWR~lp~-~~~~--~~~p~~W~C~~ 546 (625)
+...|||||.|..|=.+.= ++.. ...++.|+|..
T Consensus 18 ~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 4578999999999977652 3322 22468898853
No 64
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.97 E-value=0.16 Score=43.99 Aligned_cols=33 Identities=30% Similarity=0.815 Sum_probs=25.3
Q ss_pred CCceecCcchhhhhccC-CCCCCCCCCCCccccC
Q 006934 514 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCYM 546 (625)
Q Consensus 514 ~~~WvQCd~C~KWR~lp-~~~~~~~~p~~W~C~~ 546 (625)
...+||||.|.+|-.+. .++.....|+.|+|..
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~ 72 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCER 72 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTT
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCC
Confidence 45899999999998876 3344456889999963
No 65
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=88.62 E-value=0.3 Score=52.01 Aligned_cols=72 Identities=22% Similarity=0.275 Sum_probs=43.1
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEeceeccCCCCCCEEEEEeCCCCCChhhHhhhhhcccCCCCCCCCCcccc
Q 006934 125 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 199 (625)
Q Consensus 125 ~~f~AIaELIdNA~DA~-----At~v~I~i~~~~~~~~~~~~~~L~I~DNG~GMt~eel~~~l~fG~s~k~~~~~~~IG~ 199 (625)
.+.-++.||+.||+..+ ...|.|.+... ..+.-.|.|.|+|.|++.. . . . +.
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~-----~~~~l~i~V~D~G~g~~~~----------~-~-----~--~~ 353 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALA-----GDGNVRASVIDRGQWKDHR----------D-G-----A--RG 353 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC-----TTSEEEEEEEESCBC---------------------------
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc-----CCCEEEEEEEECCCCCCCC----------C-C-----C--CC
Confidence 35678999999999986 56788877631 1335689999999999875 0 0 0 22
Q ss_pred cCceeeeeccccCCeEEEEEE
Q 006934 200 FGVGFKTGAMRLGKDALVLTQ 220 (625)
Q Consensus 200 fGvGfKsA~~~lg~~v~V~Sk 220 (625)
-|.|+..+- .+++.+.+.+.
T Consensus 354 ~G~GL~lv~-~l~~~~~~~~~ 373 (399)
T 3ke6_A 354 RGRGLAMAE-ALVSEARIMHG 373 (399)
T ss_dssp ---CHHHHH-TTSSEEEEEEE
T ss_pred CCcHHHHHH-HHHHheeeEEC
Confidence 377774332 37777776543
No 66
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.55 E-value=0.15 Score=41.42 Aligned_cols=31 Identities=23% Similarity=0.848 Sum_probs=23.1
Q ss_pred CceecCcchhhhhccCC-CCC-CCCCCCCcccc
Q 006934 515 QEWVQCNKCRKWRMLDP-GFD-TKSLPVEWFCY 545 (625)
Q Consensus 515 ~~WvQCd~C~KWR~lp~-~~~-~~~~p~~W~C~ 545 (625)
..|||||.|..|-.+.= ++. ...+|+.|+|.
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~ 61 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCF 61 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECC
Confidence 37999999999977752 333 23578999995
No 67
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=82.78 E-value=0.2 Score=38.17 Aligned_cols=34 Identities=26% Similarity=0.702 Sum_probs=22.8
Q ss_pred CCCCceecCc-chhhhhccCC-CCCC-CCCCCCcccc
Q 006934 512 KPDQEWVQCN-KCRKWRMLDP-GFDT-KSLPVEWFCY 545 (625)
Q Consensus 512 ~~~~~WvQCd-~C~KWR~lp~-~~~~-~~~p~~W~C~ 545 (625)
.++..||||| .|.+|=.+.= ++.. ...+++|+|.
T Consensus 13 ~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 13 KDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred CCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 3467899999 8999976652 3321 1124789885
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=82.72 E-value=0.65 Score=44.86 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=31.6
Q ss_pred HHHHHhcccccC--------CCccEEEEEeceeccCC--CCCCEEEEEeCCCCCChhhHhhhhh
Q 006934 130 IAELVDNSRDAK--------ATKLEISIESIYFKKAG--KDIPMLSIIDDGHGMTHQDVVRMTY 183 (625)
Q Consensus 130 IaELIdNA~DA~--------At~v~I~i~~~~~~~~~--~~~~~L~I~DNG~GMt~eel~~~l~ 183 (625)
+..|++||.+|- ...|.|.+.. . ++...|.|.|+|.|++.+.+.++|.
T Consensus 110 lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~------~~~~~~l~i~V~d~G~~i~~e~~~~if~ 167 (192)
T 1ixm_A 110 LAKLMRKLFHLFDQAVSRESENHLTVSLQT------DHPDRQLILYLDFHGAFADPSAFDDIRQ 167 (192)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCCEEEEEEEC------CCSSSSCEEEEEEESCBSCGGGCC----
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEEEE------ecCCCEEEEEEEeCCCCCCHHHHHHHHh
Confidence 344555555552 4568887763 3 4578899999999999998887764
No 69
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=79.77 E-value=0.35 Score=39.62 Aligned_cols=33 Identities=15% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCCceecCcchhhhhccC-CCCCCC--CCCCCcccc
Q 006934 513 PDQEWVQCNKCRKWRMLD-PGFDTK--SLPVEWFCY 545 (625)
Q Consensus 513 ~~~~WvQCd~C~KWR~lp-~~~~~~--~~p~~W~C~ 545 (625)
++..|||||.|..|=... .++... ..++.|+|.
T Consensus 21 ~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~ 56 (75)
T 3kqi_A 21 VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCP 56 (75)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCH
T ss_pred CCCCEEEcCCCCCCEecccccccccccCCCCEEECC
Confidence 466899999999996554 122222 234789885
No 70
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.84 E-value=0.19 Score=41.65 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCCceecCcchhhhhccC-CCCCC--CCCCCCcccc
Q 006934 513 PDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCY 545 (625)
Q Consensus 513 ~~~~WvQCd~C~KWR~lp-~~~~~--~~~p~~W~C~ 545 (625)
+...|||||.|..|=... .++.. ...++.|+|.
T Consensus 23 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 58 (79)
T 1wep_A 23 VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCP 58 (79)
T ss_dssp SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCT
T ss_pred CCCceEEcCCCCCcEEeeecCcccccccCCCeEECC
Confidence 357899999999995543 12221 2346899985
No 71
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=73.55 E-value=1.4 Score=35.26 Aligned_cols=32 Identities=22% Similarity=0.803 Sum_probs=23.4
Q ss_pred CCceecCc--chhhhhccC-CCC-----CCCCCCCCcccc
Q 006934 514 DQEWVQCN--KCRKWRMLD-PGF-----DTKSLPVEWFCY 545 (625)
Q Consensus 514 ~~~WvQCd--~C~KWR~lp-~~~-----~~~~~p~~W~C~ 545 (625)
+..+|||| .|..|-... -++ .....|++|+|.
T Consensus 21 ~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 21 NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 45799999 599998876 232 224578899995
No 72
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.39 E-value=0.78 Score=37.81 Aligned_cols=33 Identities=21% Similarity=0.701 Sum_probs=23.5
Q ss_pred CCCceecCc--chhhhhccC-CCCCC------CCCCCCcccc
Q 006934 513 PDQEWVQCN--KCRKWRMLD-PGFDT------KSLPVEWFCY 545 (625)
Q Consensus 513 ~~~~WvQCd--~C~KWR~lp-~~~~~------~~~p~~W~C~ 545 (625)
.+..||||| .|..|-.+. -++.. ...|++|+|.
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~ 67 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECC
Confidence 456899999 999997654 12221 1578999995
No 73
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=72.66 E-value=0.58 Score=44.07 Aligned_cols=34 Identities=21% Similarity=0.533 Sum_probs=22.6
Q ss_pred CCCceecCcchhhhhccCC-CCC--CCCCCCCccccC
Q 006934 513 PDQEWVQCNKCRKWRMLDP-GFD--TKSLPVEWFCYM 546 (625)
Q Consensus 513 ~~~~WvQCd~C~KWR~lp~-~~~--~~~~p~~W~C~~ 546 (625)
+...|||||.|..|=...= ++. ....++.|+|..
T Consensus 19 ~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~ 55 (174)
T 2ri7_A 19 ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQ 55 (174)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHH
T ss_pred CCCCEeECCCCCchhChhhcCCchhhccCccCeecCC
Confidence 3568999999999955431 221 123578999864
No 74
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=70.86 E-value=0.84 Score=37.08 Aligned_cols=32 Identities=22% Similarity=0.724 Sum_probs=20.0
Q ss_pred CCceecCcchhhhhccC-CCCCCC-CCCCCcccc
Q 006934 514 DQEWVQCNKCRKWRMLD-PGFDTK-SLPVEWFCY 545 (625)
Q Consensus 514 ~~~WvQCd~C~KWR~lp-~~~~~~-~~p~~W~C~ 545 (625)
...||+||.|..|=.+. .++... ...+.|+|.
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~ 63 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCP 63 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCT
T ss_pred CCCEEEcCCCCcccccccCCCCccCCCCCCEECh
Confidence 34799999999996443 111111 123789995
No 75
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=70.67 E-value=1.1 Score=35.74 Aligned_cols=19 Identities=32% Similarity=0.758 Sum_probs=15.3
Q ss_pred CCCCCceecCc-chhhhhcc
Q 006934 511 YKPDQEWVQCN-KCRKWRML 529 (625)
Q Consensus 511 ~~~~~~WvQCd-~C~KWR~l 529 (625)
+.++..||||| .|.+|=..
T Consensus 18 ~~~~~~mI~CD~~C~~WfH~ 37 (65)
T 2vpb_A 18 VNDDQDAILCEASCQKWFHR 37 (65)
T ss_dssp CCTTSCEEEBTTTTCCEEEH
T ss_pred cCCCCCeEecccCccccCch
Confidence 45678999999 99999443
No 76
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.27 E-value=3.3 Score=35.37 Aligned_cols=30 Identities=27% Similarity=0.801 Sum_probs=20.0
Q ss_pred CceecCcc--hh-hhhccCC-CCCCCCCCCCcccc
Q 006934 515 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 545 (625)
Q Consensus 515 ~~WvQCd~--C~-KWR~lp~-~~~~~~~p~~W~C~ 545 (625)
..+||||. |. .|=.+.= ++. ...+++|||.
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl~-~~p~g~W~Cp 80 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 80 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTCS-SCCCSSCCCT
T ss_pred CCEeEecCCCCCCCCEecccCCcC-cCCCCCEECc
Confidence 47999999 76 8966542 222 2234789996
No 77
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=55.65 E-value=4.7 Score=32.66 Aligned_cols=30 Identities=27% Similarity=0.801 Sum_probs=20.2
Q ss_pred CceecCcc--hh-hhhccCC-CCCCCCCCCCcccc
Q 006934 515 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 545 (625)
Q Consensus 515 ~~WvQCd~--C~-KWR~lp~-~~~~~~~p~~W~C~ 545 (625)
..+|+||. |. .|=.+.= ++. ....++|||.
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~-~~p~g~w~Cp 60 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 60 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCS-SCCSSCCCCT
T ss_pred CCEeEeeCCCCCCccEecccCCcC-cCCCCCEECC
Confidence 57999999 87 7976652 222 2224789995
No 78
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.82 E-value=2.9 Score=33.97 Aligned_cols=32 Identities=19% Similarity=0.566 Sum_probs=20.8
Q ss_pred CCceecCcchhhhhccC-CCCCCC------CCCCCcccc
Q 006934 514 DQEWVQCNKCRKWRMLD-PGFDTK------SLPVEWFCY 545 (625)
Q Consensus 514 ~~~WvQCd~C~KWR~lp-~~~~~~------~~p~~W~C~ 545 (625)
...|||||.|..|-... .++... ..++.|+|.
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 45899999999996553 122211 136789985
No 79
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=47.85 E-value=4.6 Score=31.83 Aligned_cols=30 Identities=20% Similarity=0.691 Sum_probs=19.5
Q ss_pred CceecCcc--hh-hhhccCC-CCCCCCCCCCcccc
Q 006934 515 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 545 (625)
Q Consensus 515 ~~WvQCd~--C~-KWR~lp~-~~~~~~~p~~W~C~ 545 (625)
..+||||. |. .|=.+.= ++. ....++|||.
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp 55 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCP 55 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeeeeCCCCCcccEecccCCcC-cCCCCCEECc
Confidence 47999999 55 8966542 222 2235799984
No 80
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=47.03 E-value=4.8 Score=31.36 Aligned_cols=30 Identities=23% Similarity=0.724 Sum_probs=19.5
Q ss_pred CceecCcc--hh-hhhccCC-CCCCCCCCCCcccc
Q 006934 515 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 545 (625)
Q Consensus 515 ~~WvQCd~--C~-KWR~lp~-~~~~~~~p~~W~C~ 545 (625)
..+||||. |. .|=.+.= ++. ....++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~-~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLT-TKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcc-cCCCCCEECc
Confidence 47999999 77 7966542 222 1223789984
No 81
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=46.37 E-value=6.1 Score=43.74 Aligned_cols=36 Identities=28% Similarity=0.757 Sum_probs=25.2
Q ss_pred CCCCCceecCcchhhhhccC-CCCCC--CCCCCCccccC
Q 006934 511 YKPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 546 (625)
Q Consensus 511 ~~~~~~WvQCd~C~KWR~lp-~~~~~--~~~p~~W~C~~ 546 (625)
.-|+..|||||.|..|=... -++.. .+..++|+|-.
T Consensus 52 ~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~ 90 (528)
T 3pur_A 52 KKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPK 90 (528)
T ss_dssp TTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTT
T ss_pred CCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcC
Confidence 34678999999999998764 23322 24568999943
No 82
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=43.74 E-value=9.1 Score=32.52 Aligned_cols=30 Identities=20% Similarity=0.595 Sum_probs=19.4
Q ss_pred CceecCcchh---hhhccCC-CCCCCCCCCCcccc
Q 006934 515 QEWVQCNKCR---KWRMLDP-GFDTKSLPVEWFCY 545 (625)
Q Consensus 515 ~~WvQCd~C~---KWR~lp~-~~~~~~~p~~W~C~ 545 (625)
..+|+||.|. .|=.+.= ++.. ...++|||.
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~~-~p~~~W~Cp 70 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLKQ-APKGKWYCS 70 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCSS-CTTSCCCSS
T ss_pred CCEEEecCCCCccccCcCccCCCCc-CCCCCccCC
Confidence 3699999976 8966652 2221 223689985
No 83
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=42.27 E-value=6.8 Score=37.53 Aligned_cols=16 Identities=31% Similarity=0.895 Sum_probs=13.6
Q ss_pred CceecCcchhhhhccC
Q 006934 515 QEWVQCNKCRKWRMLD 530 (625)
Q Consensus 515 ~~WvQCd~C~KWR~lp 530 (625)
..|||||.|..|=...
T Consensus 19 ~~MIqCd~C~~W~H~~ 34 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHSK 34 (183)
T ss_dssp CCEEECTTTCCEEEGG
T ss_pred CCeEECCCCCcccchh
Confidence 3699999999998764
No 84
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=41.54 E-value=3.1 Score=45.75 Aligned_cols=35 Identities=14% Similarity=0.367 Sum_probs=23.5
Q ss_pred CCCCceecCcchhhhhccC-CCCCC--CCCCCCccccC
Q 006934 512 KPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 546 (625)
Q Consensus 512 ~~~~~WvQCd~C~KWR~lp-~~~~~--~~~p~~W~C~~ 546 (625)
.+...|||||.|..|=... -++.. ...++.|+|..
T Consensus 47 d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 84 (488)
T 3kv5_D 47 DVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPN 84 (488)
T ss_dssp CTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHH
T ss_pred CCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCC
Confidence 3467899999999996554 12222 23468899954
No 85
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=39.40 E-value=8.1 Score=33.57 Aligned_cols=19 Identities=32% Similarity=0.824 Sum_probs=14.8
Q ss_pred CCCCceecCc-chhhhhccC
Q 006934 512 KPDQEWVQCN-KCRKWRMLD 530 (625)
Q Consensus 512 ~~~~~WvQCd-~C~KWR~lp 530 (625)
.++..||||| .|..|=...
T Consensus 14 ~~~~~mi~Cdd~C~~WfH~~ 33 (105)
T 2xb1_A 14 NDDQDAILCEASCQKWFHRE 33 (105)
T ss_dssp CTTSCEEECTTTTCCEEEGG
T ss_pred CCCCCEEEecCCcccccccc
Confidence 3466899998 999996553
No 86
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.39 E-value=8.3 Score=30.01 Aligned_cols=30 Identities=27% Similarity=0.815 Sum_probs=19.5
Q ss_pred CceecCcc--hh-hhhccC-CCCCCCCCCCCcccc
Q 006934 515 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 545 (625)
Q Consensus 515 ~~WvQCd~--C~-KWR~lp-~~~~~~~~p~~W~C~ 545 (625)
...|+||. |. .|=.+. .++. ....++|||.
T Consensus 21 g~mi~CD~cdC~~~wfH~~Cvgl~-~~p~g~w~C~ 54 (60)
T 2vnf_A 21 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 54 (60)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCEEEeCCCCCCCceEehhcCCCC-cCCCCCEECc
Confidence 57999999 65 796655 2222 1223789984
No 87
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.91 E-value=12 Score=30.08 Aligned_cols=31 Identities=23% Similarity=0.587 Sum_probs=19.4
Q ss_pred CCceecCcchh---hhhccC-CCCCCCCCCCCcccc
Q 006934 514 DQEWVQCNKCR---KWRMLD-PGFDTKSLPVEWFCY 545 (625)
Q Consensus 514 ~~~WvQCd~C~---KWR~lp-~~~~~~~~p~~W~C~ 545 (625)
...+||||.|. .|=.+. .++.. ...++|||.
T Consensus 16 ~g~MI~CD~cdC~~~WfH~~Cvgl~~-~p~~~w~Cp 50 (70)
T 1x4i_A 16 YGEMVGCDNQDCPIEWFHYGCVGLTE-APKGKWYCP 50 (70)
T ss_dssp CSSEECCSCTTCSCCCEEHHHHTCSS-CCSSCCCCH
T ss_pred CCCEeEeCCCCCCccCCcccccccCc-CCCCCEECC
Confidence 34899999974 785544 12222 236789884
No 88
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=29.84 E-value=11 Score=32.94 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=10.5
Q ss_pred eecCcchhhhhc
Q 006934 517 WVQCNKCRKWRM 528 (625)
Q Consensus 517 WvQCd~C~KWR~ 528 (625)
.||||.|..|=.
T Consensus 2 mi~c~~c~~w~H 13 (140)
T 2ku7_A 2 MMQCGKCDRWVH 13 (140)
T ss_dssp CCCCSCCSSCHH
T ss_pred ccccccCCCccC
Confidence 699999999954
Done!