Query 006936
Match_columns 625
No_of_seqs 222 out of 670
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 12:52:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 2.3E-65 7.9E-70 554.3 44.9 289 261-612 106-435 (435)
2 1w63_M Adaptor-related protein 100.0 2.2E-65 7.7E-70 552.6 37.2 290 261-612 108-422 (423)
3 1i31_A Clathrin coat assembly 100.0 3.8E-62 1.3E-66 509.8 34.2 273 277-612 1-314 (314)
4 4en2_M AP-1 complex subunit MU 100.0 1.9E-59 6.5E-64 479.7 29.3 245 306-612 1-265 (266)
5 3ml6_A Chimeric complex betwee 100.0 3.4E-58 1.2E-62 492.2 35.3 288 260-612 58-385 (385)
6 3l81_A AP-4 complex subunit MU 100.0 1.3E-57 4.6E-62 473.5 31.1 262 297-612 14-301 (301)
7 3g9h_A Suppressor of yeast pro 98.6 2.8E-05 9.4E-10 81.6 26.5 224 317-609 69-325 (328)
8 1w63_Q Adapter-related protein 98.0 2.3E-05 7.7E-10 74.1 9.5 30 261-290 108-137 (158)
9 2vgl_S AP-2 complex subunit si 97.6 0.00029 1E-08 65.0 9.6 29 261-289 108-137 (142)
10 3tjz_C Coatomer subunit zeta-1 96.4 0.00079 2.7E-08 63.4 1.2 30 261-290 119-148 (153)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=2.3e-65 Score=554.31 Aligned_cols=289 Identities=19% Similarity=0.278 Sum_probs=244.1
Q ss_pred hHHHHHHHhhCCCCcccccCchhhhheeecCCCC---------CCCCCCCCCCCccCCCCCCccc-EEEEEEEEEEEEEE
Q 006936 261 DALRSFISSAMPFGTPVDLSYSNIFAIKVNGFPS---------SELPPQDLKQPAWKPYLYKGKQ-RLLFTIHETVHAAM 330 (625)
Q Consensus 261 ~~lyELLDE~mdFG~Pq~T~~~~Lk~~i~~~~~~---------~~~~~~~~k~~~WR~~giKykk-EIfvDViE~Vn~~l 330 (625)
..+|++||||||+|+||+|+++.|++++...... ..++.+.+++++||+.|++|++ ||||||+|+|++ +
T Consensus 106 ~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~-~ 184 (435)
T 2vgl_M 106 VLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL-L 184 (435)
T ss_dssp HHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------CCSSCSCCCCSSCEEEEEEEEEEEE-E
T ss_pred HHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccccccccccCCcCcceEEEEEEEEEEE-E
Confidence 7999999999999999999999999999874321 1234467789999999999998 999999999999 9
Q ss_pred EcCCCCeEEEEEEEEEEEeeeecCCCeEEEeecCC-------------------CCccccccccccccccCCccCcCCEE
Q 006936 331 YDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGL-------------------NSAHVEVLSFHPSAQVPEQGVDKQAV 391 (625)
Q Consensus 331 ~d~~G~vl~seI~G~I~~Ks~LSGmPev~L~LN~~-------------------~~~~LdDvsFHqCV~l~~fe~d~r~I 391 (625)
++++|.+++++|.|+|+|||+|||||+|+|+||++ ....|+||+|||||++++|+.+ |+|
T Consensus 185 ~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~-r~i 263 (435)
T 2vgl_M 185 MSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSE-RSI 263 (435)
T ss_dssp ECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC-----------------CCCCCEEEECTTEEEC------CCE
T ss_pred EcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccccccccccccccccCceEccccccceeecHhHhccC-ceE
Confidence 99999999999999999999999999999999985 1257999999999999999999 999
Q ss_pred EEeCCCCeEEEEEEeeccCCCCCeEEEEEEEEecCCcceEEEEEEEEecCCCCceeeEEEEEEecCCCCeeeeEeeecce
Q 006936 392 MFSPPLGNFVLMRYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIG 471 (625)
Q Consensus 392 sFiPPDGeF~LM~Yri~~~~~pPf~v~~qv~~~s~~~~~f~v~Lkl~~~~k~~~~ae~v~V~IP~P~~~i~s~~~~~S~G 471 (625)
+|+||||+|+||+||++.+..+||.+.+.++..++ .+++++++++..++.+..+++|.|+||+|+ .+..+.++++.|
T Consensus 264 sF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~--~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~-~~~~~~~~~~~G 340 (435)
T 2vgl_M 264 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR--TKLEVKVVIKSNFKPSLLAQKIEVRIPTPL-NTSGVQVICMKG 340 (435)
T ss_dssp EECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTT--TEEEEEEEEEECSCTTSEEEEEEEEEECCS-SCCCEEEEESSS
T ss_pred EEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCC--CEEEEEEEEeCCCCCCceeeEEEEEEECCC-CCCCceEEecce
Confidence 99999999999999998888899999999986543 368899988888888778999999999999 788899999999
Q ss_pred eEEeeC--CeEEEEEecCCccccCCCceEEEEEEEEeccccccccCCCCCCCCCCccccccCCCcchhHHHHHhhhccCC
Q 006936 472 TVSNNE--HSVEWKIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDEDSDIETDNTNNVVNIEEFLMEKMNMDL 549 (625)
Q Consensus 472 ~v~~~~--~~liW~I~~~gkkf~~g~~E~tL~g~v~l~~~~~~r~~~~~~~~ed~~~~~~~t~~~~n~~e~~~~k~~~~~ 549 (625)
+++|++ ++++|+| + +| +|++|++|+|++.|.+.... + .| ..
T Consensus 341 ~~~y~~~~~~l~W~I---~-~~-~~~~~~~l~~~~~l~~~~~~----------~---------------------~~-~~ 383 (435)
T 2vgl_M 341 KAKYKASENAIVWKI---K-RM-AGMKESQISAEIELLPTNDK----------K---------------------KW-AR 383 (435)
T ss_dssp EEEEETTTTEEEEEE---E-EE-ETTCEEEEEEEEECCCCSCS----------C---------------------CC-CC
T ss_pred eEEEccCCCEEEEEe---c-cC-CCCCCEEEEEEEEecCCCcC----------c---------------------cc-CC
Confidence 999965 9999999 5 46 88899999999999743100 0 00 12
Q ss_pred CCCCCCCccccccCceEEEEEEECceecccceEEeeeeE----------eecccccCCCCcceEEeccEEEEc
Q 006936 550 PPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVS----------IYPAVKAPVEFSAQVTSGDYILWN 612 (625)
Q Consensus 550 ~~~d~~dp~c~~~~~pIsl~FeIP~~T~SGLkVd~LkV~----------~~kwVKY~~~~s~~T~Sg~Y~Iwn 612 (625)
+ ||+|+|+|| +++|||+|++|+|. +|||||| +|+||+|++|.
T Consensus 384 ~--------------pi~v~F~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY------~t~sg~y~~R~ 435 (435)
T 2vgl_M 384 P--------------PISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRY------IGRSGIYETRC 435 (435)
T ss_dssp C--------------CEEEEEEES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEEE------EEEEEEEEECC
T ss_pred C--------------cEEEEEEEE-ecccccEEEEEEEeccccccCCCCCcCceEE------EEeCCeEEEcC
Confidence 3 999999999 99999999999992 7999999 99999999984
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.2e-65 Score=552.61 Aligned_cols=290 Identities=18% Similarity=0.252 Sum_probs=248.3
Q ss_pred hHHHHHHHhhCCCCcccccCchhhhheeecCCCC-----CCCCCCCCCCCccCCCCCCccc-EEEEEEEEEEEEEEEcCC
Q 006936 261 DALRSFISSAMPFGTPVDLSYSNIFAIKVNGFPS-----SELPPQDLKQPAWKPYLYKGKQ-RLLFTIHETVHAAMYDRD 334 (625)
Q Consensus 261 ~~lyELLDE~mdFG~Pq~T~~~~Lk~~i~~~~~~-----~~~~~~~~k~~~WR~~giKykk-EIfvDViE~Vn~~l~d~~ 334 (625)
..+|++||||||+|+||+|+++.|++++...... ..++.+.+++++||+.|++|++ ||||||+|+|++ +++++
T Consensus 108 ~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~i~wr~~g~~~~~nei~vdV~E~v~~-~~~~~ 186 (423)
T 1w63_M 108 VIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNL-LVSAN 186 (423)
T ss_dssp HHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC-----------CCSSCSSCCCSSCEEEEEEEEEEEE-EEETT
T ss_pred HHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCccccccccCCcccccCCCCccccCCccccceEEEEEEEEEEE-EECCC
Confidence 7999999999999999999999999999874321 1234466788999999999998 999999999999 99999
Q ss_pred CCeEEEEEEEEEEEeeeecCCCeEEEeecCCC-----------CccccccccccccccCCccCcCCEEEEeCCCCeEEEE
Q 006936 335 EIPDSLSVSGQINCRAELEGMPDVSFPLTGLN-----------SAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLM 403 (625)
Q Consensus 335 G~vl~seI~G~I~~Ks~LSGmPev~L~LN~~~-----------~~~LdDvsFHqCV~l~~fe~d~r~IsFiPPDGeF~LM 403 (625)
|.+++++|.|+|+|||+|||||+|+|+||++. .+.|+||+|||||++++|+++ |+|+|+||||+|+||
T Consensus 187 G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~~~~~~v~l~d~~fHpcV~~~~f~~~-r~isf~PPdg~F~Lm 265 (423)
T 1w63_M 187 GNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQCVRLSRFEND-RTISFIPPDGEFELM 265 (423)
T ss_dssp TEEEEEEEEEEEEEEEECSSCCEEEEEECSCC-------------CEEEEEECTTEEESSSSSC-CEEEECCCSEEEEEE
T ss_pred CCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccccccCceEcccccccccccHHHhCCC-CeEEEECCCCcEEEE
Confidence 99999999999999999999999999999984 136899999999999999999 999999999999999
Q ss_pred EEeeccCCCCCeEEEEEEEEecCCcceEEEEEEEEecCCCCceeeEEEEEEecCCCCeeeeEeeecceeEEeeC--CeEE
Q 006936 404 RYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIGTVSNNE--HSVE 481 (625)
Q Consensus 404 ~Yri~~~~~pPf~v~~qv~~~s~~~~~f~v~Lkl~~~~k~~~~ae~v~V~IP~P~~~i~s~~~~~S~G~v~~~~--~~li 481 (625)
+||++.+..+||++.+.++..++ .+++++++++..++.+..+++|.|+||+|+ .+.+++++++.|+++|++ ++++
T Consensus 266 ~Yr~~~~~~~P~~i~~~~~~~~~--~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~-~~~~~~~~~~~G~~~y~~~~~~l~ 342 (423)
T 1w63_M 266 SYRLNTHVKPLIWIESVIEKHSH--SRIEYMVKAKSQFKRRSTANNVEIHIPVPN-DADSPKFKTTVGSVKWVPENSEIV 342 (423)
T ss_dssp EEEEECCCCCTTCCEEEEEEETT--TEEEEEEEEECCSCTTSEEESCEEEEECCT-TCCCCEEEESSSEEEEETGGGEEE
T ss_pred EEEecCCcCCCEEEEEEEEecCC--CEEEEEEEEcccCCCcceeeEEEEEEeCCC-CcccceEEecCccEEEecCCCEEE
Confidence 99998878899999999986543 478899988888888778999999999999 788899999999999965 9999
Q ss_pred EEEecCCccccCCCceEEEEEEEEeccccccccCCCCCCCCCCccccccCCCcchhHHHHHhhhccCCCCCCCCCccccc
Q 006936 482 WKIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDEDSDIETDNTNNVVNIEEFLMEKMNMDLPPVDLEEPFCWQ 561 (625)
Q Consensus 482 W~I~~~gkkf~~g~~E~tL~g~v~l~~~~~~r~~~~~~~~ed~~~~~~~t~~~~n~~e~~~~k~~~~~~~~d~~dp~c~~ 561 (625)
|+| ++ | +|+.|++|+|++.|.+...+ +.+ ..+
T Consensus 343 W~I---~~-i-~~~~~~~l~~~~~l~~~~~~-------------------------------~~~-~~~----------- 374 (423)
T 1w63_M 343 WSV---KS-F-PGGKEYLMRAHFGLPSVEAE-------------------------------DKE-GKP----------- 374 (423)
T ss_dssp EEC---SE-E-ETTCEEEEEEEEEC------------------------------------------CC-----------
T ss_pred EEe---Cc-C-CCCCcEEEEEEEEccCCCcc-------------------------------ccc-CCC-----------
Confidence 999 55 5 88899999999999642100 000 223
Q ss_pred cCceEEEEEEECceecccceEEeeeeE------eecccccCCCCcceEEeccEEEEc
Q 006936 562 AYNYAKVSFKIIGASISGMSIDPKSVS------IYPAVKAPVEFSAQVTSGDYILWN 612 (625)
Q Consensus 562 ~~~pIsl~FeIP~~T~SGLkVd~LkV~------~~kwVKY~~~~s~~T~Sg~Y~Iwn 612 (625)
||+|+|+|||+++|||+|++|+|. +|||||| +|+||+|++|.
T Consensus 375 ---pi~v~F~i~~~t~Sgl~V~~l~v~~~~~y~~~kwVrY------~t~sg~y~~R~ 422 (423)
T 1w63_M 375 ---PISVKFEIPYFTTSGIQVRYLKIIEKSGYQAIPWVRY------ITQNGDYQLRT 422 (423)
T ss_dssp ---CEEEEBCCSSCCTTCCCEEEEEEECSSCCCCEEEEEE------EEEBSCEEECC
T ss_pred ---cEEEEEEECCEeCCCCEEEEEEeEccCCCCCcCceEE------EEeCCcEEEec
Confidence 999999999999999999999994 8999999 99999999986
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=3.8e-62 Score=509.82 Aligned_cols=273 Identities=19% Similarity=0.262 Sum_probs=216.5
Q ss_pred cccCchhhhheeecCCC---------CCCCCCCCCCCCccCCCCCCccc-EEEEEEEEEEEEEEEcCCCCeEEEEEEEEE
Q 006936 277 VDLSYSNIFAIKVNGFP---------SSELPPQDLKQPAWKPYLYKGKQ-RLLFTIHETVHAAMYDRDEIPDSLSVSGQI 346 (625)
Q Consensus 277 q~T~~~~Lk~~i~~~~~---------~~~~~~~~~k~~~WR~~giKykk-EIfvDViE~Vn~~l~d~~G~vl~seI~G~I 346 (625)
|+|+++.||+||++... ...++.+.+++++||+.|++|++ ||||||+|+|++ +++++|.+++++|.|+|
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~-~i~~~G~v~~~eV~G~I 79 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNL-LMSPQGQVLSAHVSGRV 79 (314)
T ss_dssp -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEE-EECSSCCEEEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEE-EECCCCCEEEEEEEEEE
Confidence 78999999999987421 12355678899999999999998 999999999999 99999999999999999
Q ss_pred EEeeeecCCCeEEEeecCCC-------------------CccccccccccccccCCccCcCCEEEEeCCCCeEEEEEEee
Q 006936 347 NCRAELEGMPDVSFPLTGLN-------------------SAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQA 407 (625)
Q Consensus 347 ~~Ks~LSGmPev~L~LN~~~-------------------~~~LdDvsFHqCV~l~~fe~d~r~IsFiPPDGeF~LM~Yri 407 (625)
+|+|+|||||+|+|+||++. .+.|+||+|||||++++|+.+ |+|+|+||||+|+||+||+
T Consensus 80 ~~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~-r~IsFiPPDG~F~Lm~Yr~ 158 (314)
T 1i31_A 80 VMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSE-RSISFIPPDGEFELMRYRT 158 (314)
T ss_dssp EEEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----C-CCEEECCCSEEEEEEEEEE
T ss_pred EEEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCc-ceEEEECCCCCeEEEEEEe
Confidence 99999999999999999861 257899999999999999999 9999999999999999999
Q ss_pred ccCCCCCeEEEEEEEEecCCcceEEEEEEEEecCCCCceeeEEEEEEecCCCCeeeeEeeecceeEEeeC--CeEEEEEe
Q 006936 408 ICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIGTVSNNE--HSVEWKIM 485 (625)
Q Consensus 408 ~~~~~pPf~v~~qv~~~s~~~~~f~v~Lkl~~~~k~~~~ae~v~V~IP~P~~~i~s~~~~~S~G~v~~~~--~~liW~I~ 485 (625)
+.+..+||++.+.++..++ .+++++++++..++....+++|+|+||+|+ .+.+++++++.|+++|+. ++|+|+|
T Consensus 159 ~~~~~lP~~v~~~~~~~g~--~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~-~~~~~~~~~~~G~~~y~~~~~~l~W~I- 234 (314)
T 1i31_A 159 TKDIILPFRVIPLVREVGR--TKLEVKVVIKSNFKPSLLAQKIEVRIPTPL-NTSGVQVICMKGKAKYKASENAIVWKI- 234 (314)
T ss_dssp CSSCCCCEEEEEEEEEETT--TEEEEEEEEEECSCTTCEEEEEEEEEECCT-TEEEEEEECSSSEEEEEGGGTEEEEEE-
T ss_pred cCCcCCCEEEEEEEEecCC--cEEEEEEEEccCCCCcceeeEEEEEEECCC-CcccceEEecCceEEEecCCCEEEEEe-
Confidence 8888899999999997643 378899999888888788999999999999 888999999999999966 9999999
Q ss_pred cCCccccCCCceEEEEEEEEeccccccccCCCCCCCCCCccccccCCCcchhHHHHHhhhccCCCCCCCCCccccccCce
Q 006936 486 TSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDEDSDIETDNTNNVVNIEEFLMEKMNMDLPPVDLEEPFCWQAYNY 565 (625)
Q Consensus 486 ~~gkkf~~g~~E~tL~g~v~l~~~~~~r~~~~~~~~ed~~~~~~~t~~~~n~~e~~~~k~~~~~~~~d~~dp~c~~~~~p 565 (625)
+ +| +|+.|++|+|++.|.+.... + .| ..+ |
T Consensus 235 --~-~i-~g~~e~~l~~~~~l~s~~~~----------~---------------------~~-~~~--------------p 264 (314)
T 1i31_A 235 --K-RM-AGMKESQISAEIELLPTNDK----------K---------------------KW-ARP--------------P 264 (314)
T ss_dssp --E-EE-ESSEEEEEEEEEEECCCCSS----------S---------------------CC-CCC--------------C
T ss_pred --C-cC-CCCCcEEEEEEEEecCCCcC----------C---------------------cc-CCC--------------c
Confidence 5 56 88999999999999742100 0 00 123 9
Q ss_pred EEEEEEECceecccceEEeeeeE----------eecccccCCCCcceEEeccEEEEc
Q 006936 566 AKVSFKIIGASISGMSIDPKSVS----------IYPAVKAPVEFSAQVTSGDYILWN 612 (625)
Q Consensus 566 Isl~FeIP~~T~SGLkVd~LkV~----------~~kwVKY~~~~s~~T~Sg~Y~Iwn 612 (625)
|+|+|+|| +++|||+|++|+|. +|||||| +|+||+|++|.
T Consensus 265 i~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrY------it~sg~y~~R~ 314 (314)
T 1i31_A 265 ISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRY------IGRSGIYETRC 314 (314)
T ss_dssp EEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEEE------EEEEEEEEECC
T ss_pred EEEEEEEe-ecccCcEEEEEEEeccccccCCCCccCceEE------EEeCCeEEEcC
Confidence 99999999 99999999999992 7999999 99999999984
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=1.9e-59 Score=479.67 Aligned_cols=245 Identities=20% Similarity=0.290 Sum_probs=217.5
Q ss_pred ccCCCCCCccc-EEEEEEEEEEEEEEEcCCCCeEEEEEEEEEEEeeeecCCCeEEEeecCCC-----------Ccccccc
Q 006936 306 AWKPYLYKGKQ-RLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGLN-----------SAHVEVL 373 (625)
Q Consensus 306 ~WR~~giKykk-EIfvDViE~Vn~~l~d~~G~vl~seI~G~I~~Ks~LSGmPev~L~LN~~~-----------~~~LdDv 373 (625)
+||+.|+||++ ||||||+|+|++ +++++|.+++++|.|+|.|+|+|+|||+|+|+||++. .+.|+||
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~-~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~~~~~~~~l~d~ 79 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNL-LVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDV 79 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEE-EECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTCTTSCCBCCEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEE-EECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccccccCccCcccc
Confidence 69999999998 999999999999 9999999999999999999999999999999999852 2469999
Q ss_pred ccccccccCCccCcCCEEEEeCCCCeEEEEEEeeccCCCCCeEEEEEEEEecCCcceEEEEEEEEecCCCCceeeEEEEE
Q 006936 374 SFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVT 453 (625)
Q Consensus 374 sFHqCV~l~~fe~d~r~IsFiPPDGeF~LM~Yri~~~~~pPf~v~~qv~~~s~~~~~f~v~Lkl~~~~k~~~~ae~v~V~ 453 (625)
+|||||++++|+.+ |+|+|+||||+|+||+||++....|||++.+.++..+. .++++.+++...++.+..+++|+|+
T Consensus 80 ~fH~cV~~~~f~~~-r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~~~--~~vei~v~~k~~~~~~~~~~nV~I~ 156 (266)
T 4en2_M 80 KFHQCVRLSRFEND-RTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSH--SRIEYMVKAKSQFKRRSTANNVEIH 156 (266)
T ss_dssp EECTTBCHHHHHHH-CCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEEET--TEEEEEEEEEECBCTTCEEEEEEEE
T ss_pred ccccccCHhHcccc-ceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecCCC--EEEEEEEEEecCCCCCcEEEEEEEE
Confidence 99999999999999 99999999999999999998877899999999987653 4677888888888888889999999
Q ss_pred EecCCCCeeeeEeeecceeEEeeC--CeEEEEEecCCccccCCCceEEEEEEEEeccccccccCCCCCCCCCCccccccC
Q 006936 454 MLFPRRRVVSFDGTPSIGTVSNNE--HSVEWKIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDEDSDIETDNT 531 (625)
Q Consensus 454 IP~P~~~i~s~~~~~S~G~v~~~~--~~liW~I~~~gkkf~~g~~E~tL~g~v~l~~~~~~r~~~~~~~~ed~~~~~~~t 531 (625)
||+|+ ++.+++++++.|+++|+. ++|+|+| + +| +|+.|++|+|++.|.+.... +
T Consensus 157 IP~P~-~~~~~~~~~~~G~~~y~~~~~~lvW~I---~-~~-~g~~e~~l~~~~~l~s~~~~----------~-------- 212 (266)
T 4en2_M 157 IPVPN-DADSPKFKTTVGSVKWVPENSEIVWSV---K-SF-PGGKEYLMRAHFGLPSVEAE----------D-------- 212 (266)
T ss_dssp EECCT-TCEEEEEEESSSEEEEETTTTEEEEEE---E-EE-ESSCEEEEEEEEEC-------------------------
T ss_pred ECCCC-CcCcceEEecCceEEEeccCCEEEEEE---e-eE-CCCcceEEEEEEEeCCCCCC----------C--------
Confidence 99999 788999999999999976 9999999 5 56 89999999999999743100 0
Q ss_pred CCcchhHHHHHhhhccCCCCCCCCCccccccCceEEEEEEECceecccceEEeeeeE------eecccccCCCCcceEEe
Q 006936 532 NNVVNIEEFLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSVS------IYPAVKAPVEFSAQVTS 605 (625)
Q Consensus 532 ~~~~n~~e~~~~k~~~~~~~~d~~dp~c~~~~~pIsl~FeIP~~T~SGLkVd~LkV~------~~kwVKY~~~~s~~T~S 605 (625)
.+ ..+ ||+|+|+|||+|+|||+|+||+|. +|||||| +|+|
T Consensus 213 -------------~~-~~~--------------pI~v~F~ip~~t~SGl~V~~L~v~e~~~y~~~kwVrY------~T~s 258 (266)
T 4en2_M 213 -------------KE-GKP--------------PISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRY------ITQN 258 (266)
T ss_dssp -----------------CC--------------CEEEEEEEESEESSCCCEEEEEEECSSCCCEEEEEEE------EEEC
T ss_pred -------------cc-cCC--------------cEEEEEEeCCceeCCcEEEEEEeeccCCCCCCCCEEE------EEeC
Confidence 00 233 999999999999999999999993 8999999 9999
Q ss_pred ccEEEEc
Q 006936 606 GDYILWN 612 (625)
Q Consensus 606 g~Y~Iwn 612 (625)
|+|+||.
T Consensus 259 g~y~~R~ 265 (266)
T 4en2_M 259 GDYQLRT 265 (266)
T ss_dssp SSEEECC
T ss_pred CCEEEec
Confidence 9999986
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=3.4e-58 Score=492.24 Aligned_cols=288 Identities=19% Similarity=0.265 Sum_probs=235.1
Q ss_pred hhHHHHHHHhhCCCCcccccCchhhhheeec---CCC-CCCCCCCCCCCC-cc---CCCCCCccc-EEEEEEEEEEEEEE
Q 006936 260 KDALRSFISSAMPFGTPVDLSYSNIFAIKVN---GFP-SSELPPQDLKQP-AW---KPYLYKGKQ-RLLFTIHETVHAAM 330 (625)
Q Consensus 260 ~~~lyELLDE~mdFG~Pq~T~~~~Lk~~i~~---~~~-~~~~~~~~~k~~-~W---R~~giKykk-EIfvDViE~Vn~~l 330 (625)
+.+--.|-..+|+.|+-+-..-.. .|... .|. ....+....+++ || |+.|+||++ ||||||+|+|++ +
T Consensus 58 R~eA~~~g~~Ll~~G~i~hv~~~~--~F~d~~~y~f~~~~~~~~~~s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~-~ 134 (385)
T 3ml6_A 58 RREARKYASGLLKAGLIRHTVNKI--TFSEQCYYVFGDLSGGPRPYSPQPPPYHELEFGGSGGSRNELFLDVLESVNL-L 134 (385)
T ss_dssp HHHHHHHHHHHHHHSSEEESSSCS--SCCSSSEEEECCCCC------CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEE-E
T ss_pred HHHHHHHHHHHHhCCcEEEcCCcc--eecCcceEEeeccccccCccCCCCCCchhccccCCccccceEEEEEEEEEEE-E
Confidence 345555555666677766654221 11111 000 011233344555 99 899999999 999999999999 9
Q ss_pred EcCCCCeEEEEEEEEEEEeeeecCCCeEEEeecCCC-------------------CccccccccccccccCCccCcCCEE
Q 006936 331 YDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGLN-------------------SAHVEVLSFHPSAQVPEQGVDKQAV 391 (625)
Q Consensus 331 ~d~~G~vl~seI~G~I~~Ks~LSGmPev~L~LN~~~-------------------~~~LdDvsFHqCV~l~~fe~d~r~I 391 (625)
++++|.+++++|.|+|.|||+|||||+|+|+||++. .+.|+||+|||||++++|+.+ |+|
T Consensus 135 ~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~~~~~~~~i~l~d~~FH~CV~l~~f~~~-r~I 213 (385)
T 3ml6_A 135 MSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSE-RSI 213 (385)
T ss_dssp ECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC----------------------CCCCEEEECTTBCCCCSSSC-SEE
T ss_pred ECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccccccccccCceEccccccccccChhHcccc-ceE
Confidence 999999999999999999999999999999999862 256899999999999999999 999
Q ss_pred EEeCCCCeEEEEEEeeccCCCCCeEEEEEEEEecCCcceEEEEEEEEecCCCCceeeEEEEEEecCCCCeeeeEeeecce
Q 006936 392 MFSPPLGNFVLMRYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKAPLTMEFCNVTMLFPRRRVVSFDGTPSIG 471 (625)
Q Consensus 392 sFiPPDGeF~LM~Yri~~~~~pPf~v~~qv~~~s~~~~~f~v~Lkl~~~~k~~~~ae~v~V~IP~P~~~i~s~~~~~S~G 471 (625)
+|+||||+|+||+||++....+||++.+++++.++ .++++.++++..++.++.+++|+|+||+|+ ++.+++++++.|
T Consensus 214 sFiPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~~--~~vei~v~lk~~f~~~~~~~nV~I~IP~P~-~~~~~~~~~~~G 290 (385)
T 3ml6_A 214 SFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR--TKLEVKVVIKSNFKPSLLAQKIEVRIPTPL-NTSGVQVICMKG 290 (385)
T ss_dssp EECCCSEEEEEEEEEECSSCCCSEEEEEEEEEETT--TEEEEEEEEEECSCTTCCEEEEEEEEECCT-TEEEEEEEESSS
T ss_pred EEeCCCCceEEEEEEcCCCCCCCEEEEEEEEeCCC--eEEEEEEEEeecCCCcceEEEEEEEecCCC-CcccceEEecCc
Confidence 99999999999999998878899999999998753 477788888888988888999999999999 888999999999
Q ss_pred eEEeeC--CeEEEEEecCCccccCCCceEEEEEEEEeccccccccCCCCCCCCCCccccccCCCcchhHHHHHhhhccCC
Q 006936 472 TVSNNE--HSVEWKIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGGTVDEDSDIETDNTNNVVNIEEFLMEKMNMDL 549 (625)
Q Consensus 472 ~v~~~~--~~liW~I~~~gkkf~~g~~E~tL~g~v~l~~~~~~r~~~~~~~~ed~~~~~~~t~~~~n~~e~~~~k~~~~~ 549 (625)
+++|++ ++|+|+| + +| +|++|++|+|++.+.+.... +.| .+
T Consensus 291 ~~~y~~~~~~lvW~I---~-k~-~g~~e~~l~~~~~l~~~~~~-------------------------------~~~-~~ 333 (385)
T 3ml6_A 291 KAKYKASENAIVWKI---K-RM-AGMKESQISAEIELLPTNDK-------------------------------KKW-AR 333 (385)
T ss_dssp EEEEEGGGTEEEEEE---E-EE-CSSEEEEEEEEEEECCCSSC-------------------------------CSC-CC
T ss_pred eEEEeccCcEEEEEe---e-eE-CCCcceEEEEEEEECCCCCC-------------------------------ccc-cC
Confidence 999965 9999999 4 56 99999999999999743100 001 23
Q ss_pred CCCCCCCccccccCceEEEEEEECceecccceEEeeee----------EeecccccCCCCcceEEeccEEEEc
Q 006936 550 PPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSV----------SIYPAVKAPVEFSAQVTSGDYILWN 612 (625)
Q Consensus 550 ~~~d~~dp~c~~~~~pIsl~FeIP~~T~SGLkVd~LkV----------~~~kwVKY~~~~s~~T~Sg~Y~Iwn 612 (625)
+ ||+|+|+|| ||+|||+|+||+| ++|||||| +|+||+|+||.
T Consensus 334 ~--------------PI~v~F~Ip-~t~SGl~Vr~L~v~e~~~~~~~y~~~kwVRY------iT~sg~Y~~R~ 385 (385)
T 3ml6_A 334 P--------------PISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRY------IGRSGIYETRC 385 (385)
T ss_dssp C--------------CEEEEEEES-SCTTCCCEEEEEEECSSSCCCGGGCEEEEEE------CEEEEEEEECC
T ss_pred C--------------CEEEEEEEe-ccccCCEEEEEEEecccCcccCCCccccEEE------EEECCCEEecC
Confidence 4 999999999 9999999999999 27999999 99999999984
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=1.3e-57 Score=473.52 Aligned_cols=262 Identities=16% Similarity=0.174 Sum_probs=206.5
Q ss_pred CCCCCCCCC-ccCCCCCCccc-EEEEEEEEEEEEEEEcCCCCeEEEEEEEEEEEeeeecCCCeEEEeecCCC--------
Q 006936 297 LPPQDLKQP-AWKPYLYKGKQ-RLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGMPDVSFPLTGLN-------- 366 (625)
Q Consensus 297 ~~~~~~k~~-~WR~~giKykk-EIfvDViE~Vn~~l~d~~G~vl~seI~G~I~~Ks~LSGmPev~L~LN~~~-------- 366 (625)
++.+.++++ +||+. +|++ ||||||+|+|++ +++++|.+++++|.|+|.|+|+|+|||+|+|+||++.
T Consensus 14 ~~~a~~~pv~~wr~~--~~~knEi~vdV~E~v~~-~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~ 90 (301)
T 3l81_A 14 PSSAASRPVLSSRSD--QSQKNEVFLDVVERLSV-LIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELR 90 (301)
T ss_dssp ---------------------CEEEEEEEEEEEE-EECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTT
T ss_pred CchhhcCcccccccc--cCCcceEEEEEEEEEEE-EECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcccccccccccc
Confidence 455667766 99996 6766 999999999999 9999999999999999999999999999999999762
Q ss_pred ----CccccccccccccccCCccCcCCEEEEeCCCCeEEEEEEeeccCC--CCCeEEEEEEEEecCCcceEEEEEEEEec
Q 006936 367 ----SAHVEVLSFHPSAQVPEQGVDKQAVMFSPPLGNFVLMRYQAICGL--GPPVKGFYQLSMVSEDEGAFLFKLCLMES 440 (625)
Q Consensus 367 ----~~~LdDvsFHqCV~l~~fe~d~r~IsFiPPDGeF~LM~Yri~~~~--~pPf~v~~qv~~~s~~~~~f~v~Lkl~~~ 440 (625)
.+.|+||+|||||++++|+.+ |+|+|+||||+|+||+||++... .+||.+.+++++.+ .+.+++++++++..
T Consensus 91 ~~~~~~~l~d~~fH~cV~~~~f~~~-r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~-~~~~ie~~l~l~~~ 168 (301)
T 3l81_A 91 GYGPGIRVDEVSFHSSVNLDEFESH-RILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDR-GSGRLQVYLKLRCD 168 (301)
T ss_dssp CCCSSSEESEEEEETTCBCTTHHHH-CEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECT-TTSEEEEEEEEEEC
T ss_pred cccCceEccccccccccChhHcccc-ceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECC-CcEEEEEEEEEecC
Confidence 156899999999999999999 99999999999999999998654 69999999999863 23588899999989
Q ss_pred CCCCceeeEEEEEEecCCCCeeeeE--eeecceeEEeeCCeEEEEEecCCccccCCCceEEEEEEEEeccccccccCCCC
Q 006936 441 YKAPLTMEFCNVTMLFPRRRVVSFD--GTPSIGTVSNNEHSVEWKIMTSGRALTGRSLEATFPGTVKFAPWQTQRSSSGG 518 (625)
Q Consensus 441 ~k~~~~ae~v~V~IP~P~~~i~s~~--~~~S~G~v~~~~~~liW~I~~~gkkf~~g~~E~tL~g~v~l~~~~~~r~~~~~ 518 (625)
++.++.+++|+|+||+|+ ++.++. ++++.|+++|.+++|+|+| + +| +|+.|.++++++.+.+....
T Consensus 169 f~~~~~~~nV~I~IPvP~-~~~~~~~~~~~~~G~~~y~~~~lvW~I---~-~~-~g~~~~s~~~~~~l~~~~~~------ 236 (301)
T 3l81_A 169 LLSKSQALNVRLHLPLPR-GVVSLSQELSSPEQKAELAEGALRWDL---P-RV-QGGSQLSGLFQMDVPGPPGP------ 236 (301)
T ss_dssp SCTTCEEEEEEEEEECCT-TCEEEEEEESSTTCEEEEETTEEEEEE---C-CE-ETTCEEEEEEEEECCCCCC-------
T ss_pred CCCCcEEEEEEEEEcCCC-CcccceEEEeecCceEEEeCcEEEEEE---e-eE-CCCcEEeEEEEEEecCCccc------
Confidence 998888999999999999 676666 7788999999669999999 5 46 88889999999988642100
Q ss_pred CCCCCCccccccCCCcchhHHHHHhhhccCCCCCCCCCccccccCceEEEEEEECceecccceEEeeee--------Eee
Q 006936 519 TVDEDSDIETDNTNNVVNIEEFLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGASISGMSIDPKSV--------SIY 590 (625)
Q Consensus 519 ~~~ed~~~~~~~t~~~~n~~e~~~~k~~~~~~~~d~~dp~c~~~~~pIsl~FeIP~~T~SGLkVd~LkV--------~~~ 590 (625)
+. .+ + .++.|.....||+|+|+|||||+|||+|+||+| ++|
T Consensus 237 ----~~--------~~---------------~----~~~~~~~~~~PI~v~F~ip~~t~SGl~Vr~L~v~e~~~~~y~~~ 285 (301)
T 3l81_A 237 ----PS--------HG---------------L----STSASPLGLGPASLSFELPRHTCSGLQVRFLRLAFRPSGNANPH 285 (301)
T ss_dssp ------------------------------------------CCCCCEEEEEEEETCCSSCCCEEEEEEEC-------CE
T ss_pred ----cc--------cc---------------c----ccccccccCCCEEEEEEeCCccccCcEEEEEEEecccccCCCCc
Confidence 00 00 0 011122233499999999999999999999999 279
Q ss_pred cccccCCCCcceEEeccEEEEc
Q 006936 591 PAVKAPVEFSAQVTSGDYILWN 612 (625)
Q Consensus 591 kwVKY~~~~s~~T~Sg~Y~Iwn 612 (625)
||||| +|+||+|+||.
T Consensus 286 kwVRY------iT~sg~Y~~R~ 301 (301)
T 3l81_A 286 KWVRH------LSHSDAYVIRI 301 (301)
T ss_dssp EEEEE------EEEEEEEEECC
T ss_pred cceEE------EEeCCcEEEcC
Confidence 99999 99999999984
No 7
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=98.55 E-value=2.8e-05 Score=81.59 Aligned_cols=224 Identities=14% Similarity=0.195 Sum_probs=148.6
Q ss_pred EEEEEEEEEEEEEEEcCCCCeEEEEEEEEEEEeeeecCC-------CeEEEeecCCCCcccc----ccccccccccCCcc
Q 006936 317 RLLFTIHETVHAAMYDRDEIPDSLSVSGQINCRAELEGM-------PDVSFPLTGLNSAHVE----VLSFHPSAQVPEQG 385 (625)
Q Consensus 317 EIfvDViE~Vn~~l~d~~G~vl~seI~G~I~~Ks~LSGm-------Pev~L~LN~~~~~~Ld----DvsFHqCV~l~~fe 385 (625)
.+-..|+|.||+ .| ++|.+.++.|.|+|.+. |..|. +.+.+.|++. ..|+ +-+|-.++.-
T Consensus 69 GLnASI~E~VNA-~F-kgg~~tk~~v~GEiaLs-y~~~~~s~~p~p~~l~fRL~N~--~~Lekv~pN~~fv~~~~~---- 139 (328)
T 3g9h_A 69 GLNASIAEVLNA-SF-KDGMLQNSQLIGEIALN-YLPNSVMNSPLPIGINLRINNG--AKFEKVILNQAFIERVAP---- 139 (328)
T ss_dssp EEEEEEEEEEEE-EE-ETTEEEEEEEEEEEEEE-EECCSSSCCCCCSEEEEEEETG--GGEEEEEECTTTEEEEET----
T ss_pred ceeEEEEEEEEE-EE-ECCcEEEEEEEEEEEEe-cCCCccccCCCCccEEEEecCc--chhheeeCCHHHhccCCC----
Confidence 888999999999 66 45789999999998874 55552 4588888775 2233 3344445442
Q ss_pred CcCCEEEEeCCC---CeEEEEEEeeccCCCCCeEEEEEEEEecCCcceEEEEEEEEecCCC---CceeeEEEEEEecCCC
Q 006936 386 VDKQAVMFSPPL---GNFVLMRYQAICGLGPPVKGFYQLSMVSEDEGAFLFKLCLMESYKA---PLTMEFCNVTMLFPRR 459 (625)
Q Consensus 386 ~d~r~IsFiPPD---GeF~LM~Yri~~~~~pPf~v~~qv~~~s~~~~~f~v~Lkl~~~~k~---~~~ae~v~V~IP~P~~ 459 (625)
....|-++- ..-.+++|+++. ...|+.+.+.-+.. +....+.+..+++..+.. ....+||+|.+|+...
T Consensus 140 ---~eF~vn~~~L~sktv~~lKYqVs~-~~~PL~l~p~WK~E-~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~~V~ldGa 214 (328)
T 3g9h_A 140 ---EEFKVNPSFIDSRTLGAIKYSIKE-PIAPIVIHPVWRFE-SHQASVVLTVKMSPSLPDEISQIVIEDLVVFVNIDGA 214 (328)
T ss_dssp ---TEEEECTTTTBTCEEEEEEEEEES-CCCSEEEEEEEEEC-SSEEEEEEEEEECTTSCTTCCEEEEEEEEEEEEBCSS
T ss_pred ---CCEEEchHHhcccceeeEEEEECC-CCCCeEEEeeeecC-CCeeEEEEEEEECCCCcCcCCCceeeeEEEEEEeCCC
Confidence 233333331 235679999974 67899998877754 333344444555444554 4579999999999753
Q ss_pred CeeeeEeeecceeEEeeCCeEEEEEecCCcccc-CCCce-EEEEEEEEeccccccccCCCCCCCCCCccccccCCCcchh
Q 006936 460 RVVSFDGTPSIGTVSNNEHSVEWKIMTSGRALT-GRSLE-ATFPGTVKFAPWQTQRSSSGGTVDEDSDIETDNTNNVVNI 537 (625)
Q Consensus 460 ~i~s~~~~~S~G~v~~~~~~liW~I~~~gkkf~-~g~~E-~tL~g~v~l~~~~~~r~~~~~~~~ed~~~~~~~t~~~~n~ 537 (625)
.++++..++ .|++.-+.+.+.|+| +.-+. ..+.| -.|.|.+..+....+
T Consensus 215 ~ats~qskP-~gtwn~e~~ri~Wkl---~e~l~l~~~g~~gkLiARf~~~g~~~~------------------------- 265 (328)
T 3g9h_A 215 NATSALSKP-QGSFSKEKKRITWRF---KEPVVLTRNGEGQRLIARFITDGLAHE------------------------- 265 (328)
T ss_dssp CEEEEEESS-SCCBCSSSCEEEEEC---SSCEEEETTCCCEEEEEEEEESSCCCB-------------------------
T ss_pred ceeEEEecC-CceeccccCEEEEEC---CCCcccccCCCCCeEEEEEEcCCCCCC-------------------------
Confidence 577777776 566655669999999 44121 11223 679999988421100
Q ss_pred HHHHHhhhccCCCCCCCCCccccccCceEEEEEEECce---------ecccceEEeeeeE---ee--cccccCCCCcceE
Q 006936 538 EEFLMEKMNMDLPPVDLEEPFCWQAYNYAKVSFKIIGA---------SISGMSIDPKSVS---IY--PAVKAPVEFSAQV 603 (625)
Q Consensus 538 ~e~~~~k~~~~~~~~d~~dp~c~~~~~pIsl~FeIP~~---------T~SGLkVd~LkV~---~~--kwVKY~~~~s~~T 603 (625)
. ...|.++|++.+. .-|||.|..+... || .|.- +.+.|..
T Consensus 266 ------------~------------~~gV~akF~~~~~~~~~~~~~~~gsgi~i~~~~~~~~dPF~~~W~~--v~~~r~l 319 (328)
T 3g9h_A 266 ------------S------------AKGVITKFTISETDNVALPHSGAGSGITLTCQELDENNPFGGEWLD--VNTKRTL 319 (328)
T ss_dssp ------------C------------SSCEEEEEEECCCSCSSCTTTTCSCCCEEEEEEESSSCTTCCCCEE--CEEEEEE
T ss_pred ------------C------------CCcEEEEEEEeCCCcccccccccCCceeEEecccccCCCCcCcccc--cceEEEE
Confidence 1 0159999999976 4679999877653 44 2432 5777788
Q ss_pred EeccEE
Q 006936 604 TSGDYI 609 (625)
Q Consensus 604 ~Sg~Y~ 609 (625)
.+|.|+
T Consensus 320 ~~G~Y~ 325 (328)
T 3g9h_A 320 TTGNYH 325 (328)
T ss_dssp EEEEEE
T ss_pred eeeEEE
Confidence 899997
No 8
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.98 E-value=2.3e-05 Score=74.06 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=28.5
Q ss_pred hHHHHHHHhhCCCCcccccCchhhhheeec
Q 006936 261 DALRSFISSAMPFGTPVDLSYSNIFAIKVN 290 (625)
Q Consensus 261 ~~lyELLDE~mdFG~Pq~T~~~~Lk~~i~~ 290 (625)
..+|++||||||+|+||.|+++.|+++|..
T Consensus 108 ~~vy~lLDE~id~G~~~eT~~~~l~~~I~~ 137 (158)
T 1w63_Q 108 EKAYFILDEFLMGGDVQDTSKKSVLKAIEQ 137 (158)
T ss_dssp HHHHHHHHTTEETTEESCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEecCHHHHHHHHhc
Confidence 789999999999999999999999999975
No 9
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=97.55 E-value=0.00029 Score=65.04 Aligned_cols=29 Identities=7% Similarity=0.021 Sum_probs=25.4
Q ss_pred hHHHHHHHhhCCCCcccccC-chhhhheee
Q 006936 261 DALRSFISSAMPFGTPVDLS-YSNIFAIKV 289 (625)
Q Consensus 261 ~~lyELLDE~mdFG~Pq~T~-~~~Lk~~i~ 289 (625)
..+|++||||||+|+||.|+ .+.|+.++.
T Consensus 108 ~~vy~lLDE~id~G~~~et~~~~il~~~~~ 137 (142)
T 2vgl_S 108 YKVYTVVDEMFLAGEIRETSQTKVLKQLLM 137 (142)
T ss_dssp HHHHHHHHHHEETTEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEcCHHHHHHHHHh
Confidence 78999999999999999985 677887764
No 10
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=96.40 E-value=0.00079 Score=63.40 Aligned_cols=30 Identities=7% Similarity=-0.015 Sum_probs=26.7
Q ss_pred hHHHHHHHhhCCCCcccccCchhhhheeec
Q 006936 261 DALRSFISSAMPFGTPVDLSYSNIFAIKVN 290 (625)
Q Consensus 261 ~~lyELLDE~mdFG~Pq~T~~~~Lk~~i~~ 290 (625)
+.+|++||||||+|+||.||++.|.+.+..
T Consensus 119 ~~vy~lLDE~id~G~~~eT~~~~I~~~v~~ 148 (153)
T 3tjz_C 119 EGLFLAVDEIVDGGVILESDPQQVVHRVAL 148 (153)
T ss_dssp HHHHHHHHHHEETTEECCCCHHHHHHTC--
T ss_pred HHHHHHHHHHHcCCEeeeCCHHHHHHHHhc
Confidence 789999999999999999999999887753
Done!