BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006937
(625 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 168/353 (47%), Gaps = 15/353 (4%)
Query: 89 GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
I Q + + R A S + A+K +P A A+++ G +YK+ G+L EA E Y AL P
Sbjct: 41 SIHFQCRRLDRSAHFS-TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
+ +L +L AG+ + +Q Y AL+ +P +LG + L + +
Sbjct: 100 FIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 152
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
A CY KA +P +A A+ N+G ++ +G++ AI +E+ + + PNF A
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------LDA 205
Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328
+LG +K ++ VA Y +AL + ++A NL Y E D+AI Y A
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 329 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXX 388
PH +A NL K++ ++ +A +CY AL + P + SLNNL + QG
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 389 XXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
P +A A++NL + + G + A+ Y++ ++I P +A N
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 145/320 (45%), Gaps = 14/320 (4%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 187
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +Y
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+G ++ AI Y R + + P+F A N+A AL + G+ + E Y AL
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED-------CYNTALRL 300
Query: 296 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355
+AD++ NL E + A+ Y A P A A +NL + + + L +A+
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 356 CYQMALSIKPNFSQSLNNLG 375
Y+ A+ I P F+ + +N+G
Sbjct: 361 HYKEAIRISPTFADAYSNMG 380
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 114/258 (44%), Gaps = 14/258 (5%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+L++ + +A A Y +E A G Q LA F +AV LDP
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A+ + G + K+ A +Y +ALS P++ A+V +L G
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDL 255
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I Y A+++ PH+ AY NL E A CY A P +A++ N+ I
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295
+ +G++E A+ Y + L V P F A +N+A L +G + + + +YK+A+
Sbjct: 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-------QGKLQEALMHYKEAIRI 368
Query: 296 NWHYADAMYNLGVAYGEM 313
+ +ADA N+G EM
Sbjct: 369 SPTFADAYSNMGNTLKEM 386
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 2/198 (1%)
Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324
+A A ++LG K G + + + +Y+ AL + D NL A + A+ Y
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 325 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXX 384
A +NP ++LG + K L++A CY A+ +PNF+ + +NLG V+ QG
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 385 XXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444
+P + +AY NLG + ++A A+ AY + L + P+ N L
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN--L 243
Query: 445 AMNYINEGHDDKLFEAHR 462
A Y +G D + +R
Sbjct: 244 ACVYYEQGLIDLAIDTYR 261
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
++ N+L+ F A+A Y L + H Q + LA D++ A++L
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
P A+ + K++G + EA + Y+ AL P++ A L +L + G
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-------ADSLNNLANIKREQG 319
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231
N ++ ++ Y +AL++ P +A A+ NL V + + AL Y++A P +A+AY NM
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
Query: 232 GVIYKNRGD 240
G K D
Sbjct: 380 GNTLKEMQD 388
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/402 (24%), Positives = 168/402 (41%), Gaps = 79/402 (19%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A +L +L + +G+I + V Y+KAL +A A NL + K A++ Y+
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXX 385
A +P A+A +N+G K+ ++ A++CY A+ I
Sbjct: 69 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---------------------- 106
Query: 386 XXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA------- 438
NP +A+A++NL +++D+G+I AI +Y LK+ PD +A
Sbjct: 107 ------------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
Query: 439 -------------------------GQNRLLAMNY-------INEGHDDKLFEAHRDWGK 466
+NRL +++ ++ G + E H +
Sbjct: 155 LQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCL 214
Query: 467 RFMRLYSQ--YTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXX 524
+ + + Y + K + L +GYVS D+ H S+ +++ H+ +
Sbjct: 215 DKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA 274
Query: 525 XXXXXXXXTIRFREKVMKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLG 583
FR KVM + + D+ I K A + +D I ILV + G+T +
Sbjct: 275 LSPDDGT---NFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNE 331
Query: 584 MMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQK 625
+ A +PAP+Q W+GYP T+G +DY ITD P E ++
Sbjct: 332 LFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQ 373
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 281
P +A++ N+ I + +G++E A+ Y + L V P F A +N+A L + +G
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL-------QQQGK 58
Query: 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+ + + +YK+A+ + +ADA N+G EM A+ Y A NP A+A +NL
Sbjct: 59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118
Query: 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
I+KD N+ +A+ Y+ AL +KP+F + NL
Sbjct: 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 7/157 (4%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P +A + + + +++G + EA Y KAL P + A LA VL + G
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL-------QQQGK 58
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q+ + Y EA++I P +A AY N+G E+ AL CY +A P +A+A+ N+
Sbjct: 59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
I+K+ G++ AIA Y L + P+F A N+A L
Sbjct: 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 7/148 (4%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
L +L + GN ++ ++ Y +AL++ P +A A+ NL V + + AL Y++A
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279
P +A+AY NMG K D++ A+ CY R + ++P F A +N+A D
Sbjct: 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-------S 124
Query: 280 GDINQGVAYYKKALYYNWHYADAMYNLG 307
G+I + +A Y+ AL + DA NL
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLA 152
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 9/175 (5%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
+AD++ NL E + A+ Y A P A A +NL + + + L +A+ Y+
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSI 418
A+ I P F+ + +N+G NP +A+A++NL +++D+G+I
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127
Query: 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYS 473
AI +Y LK+ PD +A Y N H ++ D+ +R +L S
Sbjct: 128 PEAIASYRTALKLKPDFPDA---------YCNLAHCLQIVCDWTDYDERMKKLVS 173
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%)
Query: 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 390
P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL V QG
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 391 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
+PT+A+AY+N+G ++ + A+ Y + ++I+P +A N
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 7/154 (4%)
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
P +A + NL + E + A+ Y KA P +A A+ N+ + + +G L+ A+
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307
Y+ + +SP F A +NM G +K D+ + Y +A+ N +ADA NL
Sbjct: 66 YKEAIRISPTFADAYSNM-------GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118
Query: 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 341
+ + AI Y A P +A NL
Sbjct: 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
ANI R + +A+ LY LE AH LQ Q + A + EA+++ P
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A A+++ G K+ + A + Y +A+ +P++ A LA + D +GN
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-------SGNIP 128
Query: 175 DGIQKYYEALKIDPHYAPAYYNLG 198
+ I Y ALK+ P + AY NL
Sbjct: 129 EAIASYRTALKLKPDFPDAYCNLA 152
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A++L+ + K +AL Y+ + +A+ G L+ + A ++ A++++P
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA----AECLAIVL--TDLGTSL- 167
A AH++ ++KD G + EA SY AL P + A A CL IV TD +
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAY 194
KL D ++K + PH++ Y
Sbjct: 170 KLVSIVADQLEK-NRLPSVHPHHSMLY 195
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 7/141 (4%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
AEA+ N+G Y +GD + AI Y++ L + P A A +LG +GD ++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYDE 53
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344
+ YY+KAL + A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 345 KDRDNLDKAVECYQMALSIKP 365
+ + D+A+E YQ AL + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDP 134
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 72/136 (52%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 419
AL + P +++ NLG Y QG +P AEA+ NLG Y G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 420 LAIDAYEQCLKIDPDS 435
AI+ Y++ L++DP S
Sbjct: 121 EAIEYYQKALELDPRS 136
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + AI Y++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310
L + P A A +LG +GD ++ + YY+KAL + A+A YNLG AY
Sbjct: 61 ALELDP-------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 311 GEMLKFDMAIVFYELAFHFNPHC 333
+ +D AI +Y+ A +P
Sbjct: 114 YKQGDYDEAIEYYQKALELDPRS 136
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 67/117 (57%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A A +LG +GD ++ + YY+KAL + A+A YNLG AY + +D AI +Y+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
A +P AEA NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 7/137 (5%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A +LG + G+ + I+ Y +AL++DP A A+YNLG Y + YD A+ Y+K
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276
A P AEA+ N+G Y +GD + AI Y++ L + P A A +LG
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAY 113
Query: 277 KLEGDINQGVAYYKKAL 293
+GD ++ + YY+KAL
Sbjct: 114 YKQGDYDEAIEYYQKAL 130
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A A + G Y +G EA E Y KAL DP A +LG + G+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYDE 53
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I+ Y +AL++DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 236 KNRGDLESAIACYERCLAVSP 256
+GD + AI Y++ L + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDP 134
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXX 393
AEA NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 394 XXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453
+P AEA+ NLG Y G AI+ Y++ L++DP S A N L Y +G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--LGNAYYKQGD 118
Query: 454 DDKLFEAHR 462
D+ E ++
Sbjct: 119 YDEAIEYYQ 127
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + +A+ Y+ LE D + EA G Q A + + +A++LDP++
Sbjct: 9 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A A + G Y +G EA E Y KAL DP A +LG + G+ +
Sbjct: 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYDE 121
Query: 176 GIQKYYEALKIDPH 189
I+ Y +AL++DP
Sbjct: 122 AIEYYQKALELDPR 135
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 70/119 (58%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
N A A +LG +GD ++ + YY+KAL + + A+A YNLG AY + +D AI +Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
+ A +P+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG QG
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 59/110 (53%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 409
AL + PN +++ NLG Y QG +P AEA NLG
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 64/117 (54%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A +LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
A P AEA+ N+G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%)
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 391
+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 392 XXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
+P AEA+ NLG Y G AI+ Y++ L++DP++ A QN
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Query: 186 IDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP + A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
I Y++ L + P N A A +LG +GD ++ + YY+KAL + + A+A
Sbjct: 63 IEYYQKALELDP-------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 115
Query: 305 NLGVA 309
NLG A
Sbjct: 116 NLGNA 120
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 111 LDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+DP N+ A + G Y +G EA E Y KAL DP+ A +LG +
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------NAEAWYNLGNAYYK 55
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+KA P AEA
Sbjct: 56 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 115
Query: 230 NMGVIYKNRG 239
N+G + +G
Sbjct: 116 NLGNAKQKQG 125
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + + +A+ Y+ LE D N EA G Q A + + +A++LDP
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
NA A + G Y +G EA E Y KAL DP+ A + L G
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
N A A +LG +GD ++ + YY+KAL + A+A YNLG AY + +D AI +Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
+ A P+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG QG
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A +LG + G+ + I+ Y +AL++ P+ A A+YNLG Y + YD A+ Y+K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
A P AEA+ N+G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 34/142 (23%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+A YNLG AY + +D AI +Y+ A P+ AEA NLG Y + + D+A+E YQ
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 419
AL + PN AEA+ NLG Y G
Sbjct: 69 ALELYPNN----------------------------------AEAWYNLGNAYYKQGDYD 94
Query: 420 LAIDAYEQCLKIDPDSRNAGQN 441
AI+ Y++ L++ P++ A QN
Sbjct: 95 EAIEYYQKALELYPNNAEAKQN 116
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 186 IDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP + A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
I Y++ L + P N A A +LG +GD ++ + YY+KAL + A+A
Sbjct: 63 IEYYQKALELYP-------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQ 115
Query: 305 NLGVA 309
NLG A
Sbjct: 116 NLGNA 120
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 111 LDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+DP N+ A + G Y +G EA E Y KAL P+ A +LG +
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN-------NAEAWYNLGNAYYK 55
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G+ + I+ Y +AL++ P+ A A+YNLG Y + YD A+ Y+KA P AEA
Sbjct: 56 QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQ 115
Query: 230 NMGVIYKNRG 239
N+G + +G
Sbjct: 116 NLGNAKQKQG 125
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + +A+ Y+ LE N EA G Q A + + +A++L P N
Sbjct: 17 NAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN 76
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
A A + G Y +G EA E Y KAL P+ A + L G
Sbjct: 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
N A A +LG +GD + + YY+KAL + + A A YNLG AY + + AI +Y
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
+ A +P+ A+A G Y + + KA+E YQ AL + PN +++ NLG QG
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A +LG + G+ Q I+ Y +AL++DP+ A A+YNLG Y + Y A+ Y+K
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
A P A+A+ G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%)
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 391
+ AEA NLG Y + + KA+E YQ AL + PN + + NLG Y QG
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 392 XXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441
+P A+A+ G Y G AI+ Y++ L++DP++ A QN
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQN 116
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+A NLG AY + + AI +Y+ A +P+ A A NLG Y + + KA+E YQ
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 360 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 409
AL + PN +++ G Y QG +P A+A NLG
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 111 LDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+DP N+ A + G Y +G +A E Y KAL DP+ A +LG +
Sbjct: 3 MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN-------NASAWYNLGNAYYK 55
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G+ Q I+ Y +AL++DP+ A A+Y G Y + Y A+ Y+KA P A+A
Sbjct: 56 QGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQ 115
Query: 230 NMGVIYKNRG 239
N+G + +G
Sbjct: 116 NLGNAKQKQG 125
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 78 DSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136
D GN EA G Q + A + + +A++LDP NA A + G Y +G +A
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196
E Y KAL DP+ A G + G+ Q I+ Y +AL++DP+ A A N
Sbjct: 64 EYYQKALELDPN-------NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQN 116
Query: 197 LG 198
LG
Sbjct: 117 LG 118
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 8/125 (6%)
Query: 186 IDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP + A A+ NLG Y + Y A+ Y+KA P A A+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 304
I Y++ L + P N A A G +GD + + Y+KAL + + A A
Sbjct: 63 IEYYQKALELDP-------NNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQ 115
Query: 305 NLGVA 309
NLG A
Sbjct: 116 NLGNA 120
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + A+ Y+ LE D N A G Q + A + + +A++LDP N
Sbjct: 17 NAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNN 76
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
A A G Y +G +A E Y KAL DP+ A + L G
Sbjct: 77 AKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 360 ALSIKPNFSQSLNNLGVVYTVQG 382
AL + PN +++ NLG QG
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 186 IDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP + A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLG 273
I Y++ L + PN AK N+ A G
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
N A A +LG +GD ++ + YY+KAL + + A+A YNLG AY + +D AI +Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 324 ELAFHFNPHCAEACNNLG 341
+ A +P+ AEA NLG
Sbjct: 67 QKALELDPNNAEAKQNLG 84
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
AEA+ N+G Y +GD + AI Y++ L + PN A A +LG +GD ++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------NAEAWYNLGNAYYKQGDYDE 61
Query: 285 GVAYYKKALYYNWHYADAMYNLGVA 309
+ YY+KAL + + A+A NLG A
Sbjct: 62 AIEYYQKALELDPNNAEAKQNLGNA 86
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A +LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 217 AALERPMYAEAYCNMGVIYKNRG 239
A P AEA N+G + +G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%)
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 391
+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 392 XXXXXXNPTYAEAYNNLG 409
+P AEA NLG
Sbjct: 67 QKALELDPNNAEAKQNLG 84
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 78 DSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136
D GN EA G Q A + + +A++LDP NA A + G Y +G EA
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLG 164
E Y KAL DP+ A + L G
Sbjct: 64 EYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + + +A+ Y+ LE D N EA G Q A + + +A++LDP
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 115 NACAHTHCGILYKDEG 130
NA A + G + +G
Sbjct: 76 NAEAKQNLGNAKQKQG 91
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Query: 487 PLVIGYVSPDYFTHSVSYFIEAPL-VYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGG 545
PL +G+VS + H A Q T+R R + +
Sbjct: 205 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR---LAQAS 261
Query: 546 IWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL 605
D+ + A +R ID+L +L G + + A +PAPVQV W+ YP T+G
Sbjct: 262 TLHDVTALGHLATAKHIRHHGIDLLFDLAGWGGGGRPEVFALRPAPVQVNWLAYPGTSGA 321
Query: 606 PTIDYRITDSLADPP 620
P +DY + D+ A PP
Sbjct: 322 PWMDYVLGDAFALPP 336
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Query: 487 PLVIGYVSPDYFTHSVSYFIEAPL-VYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGG 545
PL +G+VS + H A Q T+R R + +
Sbjct: 205 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR---LAQAS 261
Query: 546 IWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL 605
D+ + A +R ID+L +L G + + A +PAPVQV W+ YP T+G
Sbjct: 262 TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGA 321
Query: 606 PTIDYRITDSLADPP 620
P +DY + D+ A PP
Sbjct: 322 PWMDYVLGDAFALPP 336
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPN-----FEIAKNNMAIALTDLGTKVKLEGDI 282
Y ++G + +GD + AI Y++ L PN ++ K M I L
Sbjct: 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLP------------ 55
Query: 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342
N + KK + + A+A Y LG A + + AI + A N A+A LG+
Sbjct: 56 NDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL 115
Query: 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
+Y DKA+E Y+ +SIKP F ++ ++G+ Y +G
Sbjct: 116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A ++ + +K DP N G Y D G +A ES K + D + +AE I
Sbjct: 24 AIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---SAEAYYI-- 78
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
LG++ + Q I A+ ++ YA AYY LG+VY + ++D A+ YEK
Sbjct: 79 --LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACY 248
+P + AY ++G+ Y+ +G + A+ +
Sbjct: 137 KPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 7/155 (4%)
Query: 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173
+ + G + +G A +Y K L ADP+ L LG + G
Sbjct: 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE-------TLLKLGKTYMDIGLP 55
Query: 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233
D I+ + + +D A AYY LG + + A+ ++A +YA+AY +G+
Sbjct: 56 NDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL 115
Query: 234 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+Y + G+ + AI YE+ +++ P F A ++ +A
Sbjct: 116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLA 150
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 54/130 (41%)
Query: 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375
FD AI Y+ +P+ E LG Y D + A+E + + + +++ LG
Sbjct: 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80
Query: 376 VVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
+ N YA+AY LG++Y G AI+AYE+ + I P
Sbjct: 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140
Query: 436 RNAGQNRLLA 445
A Q+ LA
Sbjct: 141 IRAYQSIGLA 150
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137
D+ + EA+ G M + + A D+ A+ L+ A A+ G++Y G +A E
Sbjct: 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIE 128
Query: 138 SYHKALSADPSYKPAAECLAI 158
+Y K +S P + A + + +
Sbjct: 129 AYEKTISIKPGFIRAYQSIGL 149
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 360 ALSIKP 365
AL + P
Sbjct: 63 ALELDP 68
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + AI Y++
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 251 CLAVSP 256
L + P
Sbjct: 63 ALELDP 68
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 325
A A +LG +GD ++ + YY+KAL + A+A YNLG AY + +D AI +Y+
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 326 AFHFNPHC 333
A +P
Sbjct: 63 ALELDPRS 70
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
AEA+ N+G Y +GD + AI Y++ L + P A A +LG +GD ++
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAYYKQGDYDE 55
Query: 285 GVAYYKKAL 293
+ YY+KAL
Sbjct: 56 AIEYYQKAL 64
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382
AEA NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 51
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A +LG + G+ + I+ Y +AL++DP A A+YNLG Y + YD A+ Y+K
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 217 A 217
A
Sbjct: 63 A 63
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESY 139
G+ EA G Q A + + +A++LDP++A A + G Y +G EA E Y
Sbjct: 1 GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 140 HKALSADP 147
KAL DP
Sbjct: 61 QKALELDP 68
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 402 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461
AEA+ NLG Y G AI+ Y++ L++DP S A N L Y +G D+ E +
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--LGNAYYKQGDYDEAIEYY 60
Query: 462 R 462
+
Sbjct: 61 Q 61
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+A A + G Y +G EA E Y KAL DP A +LG + G+
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYD 54
Query: 175 DGIQKYYEALKIDPH 189
+ I+ Y +AL++DP
Sbjct: 55 EAIEYYQKALELDPR 69
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 26/226 (11%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+A+ L+E +++D ++EA G LA + ++L P N A +
Sbjct: 42 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 101
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
+ +E +A E+ L P+Y P+ L +L+D SL L
Sbjct: 102 FTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 158
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + + A+++DP LGV+++ +YD A+ C+ A RP
Sbjct: 159 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 213
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ +G N E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 214 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 259
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 43 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 102
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEM 313
T+ E Q + L Y YA + LG +
Sbjct: 103 TN-------ESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 314 LKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
L ++ +F A +P + C LGV++ DKAV+C+ ALS++PN
Sbjct: 156 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 213
Query: 371 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
N LG P Y + NLG+ + G+ A++ + + L
Sbjct: 214 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 273
Query: 431 IDPDSR 436
+ SR
Sbjct: 274 MQRKSR 279
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 54 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 111
Query: 458 FEAHRDW 464
E RDW
Sbjct: 112 CETLRDW 118
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124
V L L + L+ S + + G G+ + A D F+ A+ + P + G
Sbjct: 160 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 219
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
+ + EA +Y +AL P Y + L I +LG ++ ++ + EAL
Sbjct: 220 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH-------REAVEHFLEAL 272
Query: 185 KI 186
+
Sbjct: 273 NM 274
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 5/199 (2%)
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
A+ DP A A+ LG+ +E A+ ++ +P +A + V Y N +
Sbjct: 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150
Query: 243 SAIACYERCLAVSPNFE-IAKNNM-AIALTDLGTKVKLEGDINQGVA-YYKKALYYNWHY 299
A + + +P ++ + KN + LT +K ++ + +GV Y +A + N
Sbjct: 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210
Query: 300 ADA--MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
D LGV + +F+ AI + A P N LG + D ++AVE Y
Sbjct: 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270
Query: 358 QMALSIKPNFSQSLNNLGV 376
AL I+P F +S NLG+
Sbjct: 271 TRALEIQPGFIRSRYNLGI 289
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 11/210 (5%)
Query: 72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131
E + +D G+ EA GI + A + ++L P N A + Y +
Sbjct: 89 EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148
Query: 132 LVEAAESYHKALSADPSYKPAAECL--AIVLTDLGTSLKLAGNTQDGIQKYY-EALK--- 185
+A E+ + +P YK + + LT + + + +G+++ Y EA
Sbjct: 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG 208
Query: 186 --IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
IDP LGV++ +++ A+ + A RP + +G N E
Sbjct: 209 DMIDPDLQTG---LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265
Query: 244 AIACYERCLAVSPNFEIAKNNMAIALTDLG 273
A+ Y R L + P F ++ N+ I+ +LG
Sbjct: 266 AVEAYTRALEIQPGFIRSRYNLGISCINLG 295
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGI 177
T G+L+ G A ++++ AL+ P Y + LG +L +++ +
Sbjct: 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS--------LWNRLGATLANGDRSEEAV 267
Query: 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALER 221
+ Y AL+I P + + YNLG+ L Y A+ + A +L+R
Sbjct: 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLK------FDMAIVFYELAFHFNPHCAEACNN 339
V+ +K Y+ H + + A+ E LK + I+F E A +P AEA
Sbjct: 47 VSASEKGYYF--HTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQF 104
Query: 340 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379
LG+ + +N A+ Q L ++PN ++L L V YT
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457
+P AEA+ LG+ + + AI A ++CL++ P++ A LA++Y N H
Sbjct: 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM--ALAVSYTNTSHQQDA 152
Query: 458 FEAHRDWGKR 467
EA ++W K+
Sbjct: 153 CEALKNWIKQ 162
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 273 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332
G K EGD+ + + + A+ + A+A LG+ E AIV + P+
Sbjct: 72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131
Query: 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXX 392
+A L V Y + + A E + + P + + N +
Sbjct: 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191
Query: 393 XXXXXNPTYAEAYNN------------LGVLYRDAGSISLAIDAYEQCLKIDPD 434
Y EA + LGVL+ +G + AIDA+ L + P+
Sbjct: 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE 245
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144
G G+ + A D+F+ A+ + P++ G + R EA E+Y +AL
Sbjct: 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275
Query: 145 ADPSYKPAAECLAIVLTDLGTSLKLAGN--TQDGIQKYYEALKIDPHYA 191
P + + L I +LG + N T +Q+ + PH A
Sbjct: 276 IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 26/226 (11%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+A+ L+E +++D ++EA G LA + ++L P N A +
Sbjct: 82 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
+ +E +A E L P+Y P+ L +L+D SL L
Sbjct: 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 198
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + + A+++DP LGV+++ +YD A+ C+ A RP
Sbjct: 199 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ +G N E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEM 313
T+ E Q + L Y YA + LG +
Sbjct: 143 TN-------ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 314 LKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
L ++ +F A +P + C LGV++ DKAV+C+ ALS++PN
Sbjct: 196 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Query: 371 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
N LG P Y + NLG+ + G+ A++ + + L
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313
Query: 431 IDPDSR 436
+ SR
Sbjct: 314 MQRKSR 319
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 151
Query: 458 FEAHRDW 464
E RDW
Sbjct: 152 CEILRDW 158
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124
V L L + L+ S + + G G+ + A D F+ A+ + P + G
Sbjct: 200 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 259
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
+ + EA +Y +AL P Y + L I +LG ++ ++ + EAL
Sbjct: 260 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH-------REAVEHFLEAL 312
Query: 185 KI 186
+
Sbjct: 313 NM 314
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 26/226 (11%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+A+ L+E +++D ++EA G LA + ++L P N A +
Sbjct: 33 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 92
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
+ +E +A E L P+Y P+ L +L+D SL L
Sbjct: 93 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 149
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + + A+++DP LGV+++ +YD A+ C+ A RP
Sbjct: 150 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 204
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ +G N E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 205 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 250
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 34 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 93
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEM 313
T+ E Q + L Y YA + LG +
Sbjct: 94 TN-------ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 146
Query: 314 LKFDMAIVFYELAFHFNPHCAEA---CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
L ++ +F A +P + C LGV++ DKAV+C+ ALS++PN
Sbjct: 147 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 204
Query: 371 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
N LG P Y + NLG+ + G+ A++ + + L
Sbjct: 205 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 264
Query: 431 IDPDSR 436
+ SR
Sbjct: 265 MQRKSR 270
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 45 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 102
Query: 458 FEAHRDW 464
E RDW
Sbjct: 103 CEILRDW 109
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124
V L L + L+ S + + G G+ + A D F+ A+ + P + G
Sbjct: 151 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 210
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
+ + EA +Y +AL P Y + L I +LG ++ ++ + EAL
Sbjct: 211 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH-------REAVEHFLEAL 263
Query: 185 KI 186
+
Sbjct: 264 NM 265
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 26/226 (11%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+A+ L+E +++D ++EA G LA + ++L P N A +
Sbjct: 42 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 101
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
+ +E +A E L P+Y P+ L +L+D SL L
Sbjct: 102 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 158
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + + A+++DP LGV+++ +YD A+ C+ A RP
Sbjct: 159 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 213
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ +G N E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 214 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 259
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 43 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 102
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEM 313
T+ E Q + L Y YA + LG +
Sbjct: 103 TN-------ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 155
Query: 314 LKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
L ++ +F A +P + C LGV++ DKAV+C+ ALS++PN
Sbjct: 156 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 213
Query: 371 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
N LG P Y + NLG+ + G+ A++ + + L
Sbjct: 214 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 273
Query: 431 IDPDSR 436
+ SR
Sbjct: 274 MQRKSR 279
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 54 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 111
Query: 458 FEAHRDW 464
E RDW
Sbjct: 112 CEILRDW 118
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124
V L L + L+ S + + G G+ + A D F+ A+ + P + G
Sbjct: 160 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 219
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
+ + EA +Y +AL P Y + L I +LG ++ ++ + EAL
Sbjct: 220 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH-------REAVEHFLEAL 272
Query: 185 KI 186
+
Sbjct: 273 NM 274
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 26/226 (11%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+A+ L+E +++D ++EA G LA + ++L P N A +
Sbjct: 19 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 78
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
+ +E +A E L P+Y P+ L +L+D SL L
Sbjct: 79 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 135
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + + A+++DP LGV+++ +YD A+ C+ A RP
Sbjct: 136 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 190
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ +G N E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 191 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 236
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 20 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 79
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEM 313
T+ E Q + L Y YA + LG +
Sbjct: 80 TN-------ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 132
Query: 314 LKFDMAIVFYELAFHFNPHCAEA---CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 370
L ++ +F A +P + C LGV++ DKAV+C+ ALS++PN
Sbjct: 133 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 190
Query: 371 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430
N LG P Y + NLG+ + G+ A++ + + L
Sbjct: 191 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 250
Query: 431 IDPDSR 436
+ SR
Sbjct: 251 MQRKSR 256
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 31 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 88
Query: 458 FEAHRDW 464
E RDW
Sbjct: 89 CEILRDW 95
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124
V L L + L+ S + + G G+ + A D F+ A+ + P + G
Sbjct: 137 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 196
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
+ + EA +Y +AL P Y + L I +LG ++ ++ + EAL
Sbjct: 197 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH-------REAVEHFLEAL 249
Query: 185 KI 186
+
Sbjct: 250 NM 251
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
A++++P +A H G+LY AA + +A+ P A + LG +L
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-------AQLWNKLGATL 216
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
Q+ + Y AL I+P Y YN+ V YS + QYD A
Sbjct: 217 ANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 77/182 (42%), Gaps = 8/182 (4%)
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC---L 156
LA + + A LDP++ H + + +E A S L + P Y+
Sbjct: 73 LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA 132
Query: 157 AIVLTDLGTS-----LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211
+ + DL ++ + AL+++P+ A + +LGV+Y+ YD+A
Sbjct: 133 DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAA 192
Query: 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
+A RP A+ + +G N + A+ Y R L ++P + NMA++ ++
Sbjct: 193 ANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252
Query: 272 LG 273
+
Sbjct: 253 MS 254
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 26/234 (11%)
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
P A+ +LG+ +E + A+ A + P + + V + N + +A+A
Sbjct: 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS 111
Query: 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307
L P +E LG+ V L+ D++ + ++
Sbjct: 112 LRAWLLSQPQYE-----------QLGS-VNLQADVDIDDLNVQSEDFF------------ 147
Query: 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367
+ ++ A NP+ A+ +LGV+Y +N D A + A+ ++P+
Sbjct: 148 --FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205
Query: 368 SQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLA 421
+Q N LG NP Y N+ V Y + LA
Sbjct: 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 355 ECYQM---ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVL 411
EC + AL + PN +Q +LGV+Y + P A+ +N LG
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215
Query: 412 YRDAGSISLAIDAYEQCLKIDP 433
+ A+DAY + L I+P
Sbjct: 216 LANGNRPQEALDAYNRALDINP 237
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
A++++P +A H G+LY AA + +A+ P A + LG +L
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-------AQLWNKLGATL 216
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 210
Q+ + Y AL I+P Y YN+ V YS + QYD A
Sbjct: 217 ANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 8/208 (3%)
Query: 74 VLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133
V +K+ EA G+ LA + + A LDP + H + + +E
Sbjct: 47 VCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARALDPADIAVHAALAVSHTNEHNAN 106
Query: 134 EAAESYHKALSADPSYKPAAEC---LAIVLTDLGTS-----LKLAGNTQDGIQKYYEALK 185
A S L + P Y+ + + DL ++ + AL+
Sbjct: 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166
Query: 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245
++P+ A + +LGV+Y+ YD+A +A RP A+ + +G N + A+
Sbjct: 167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226
Query: 246 ACYERCLAVSPNFEIAKNNMAIALTDLG 273
Y R L ++P + NMA++ +++
Sbjct: 227 DAYNRALDINPGYVRVMYNMAVSYSNMS 254
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%)
Query: 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXX 385
A NP+ A+ +LGV+Y +N D A + A+ ++P+ +Q N LG
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 386 XXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLA 421
NP Y N+ V Y + LA
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 355 ECYQM---ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVL 411
EC + AL + PN +Q +LGV+Y + P A+ +N LG
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215
Query: 412 YRDAGSISLAIDAYEQCLKIDP 433
+ A+DAY + L I+P
Sbjct: 216 LANGNRPQEALDAYNRALDINP 237
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 13/169 (7%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
+++AN+L S N+ ALA Y+ LE DS A+ G G ++ M + A D F +A++
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL---AIVLTDLGTSLK 168
+N G L+ G ++ E AL P + A E G L
Sbjct: 121 GMEN-------GDLFYMLGTVLVKLEQPKLAL---PYLQRAVELNENDTEARFQFGMCLA 170
Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
G + + ++ + DP +A A+YN GV Y+ + AL +KA
Sbjct: 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 11/204 (5%)
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
G+ + + + +A++ + A Y N + S + + + AL Y+KA A AY
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96
Query: 231 MGVIYKNRGDLESAIACYERCL-AVSPNFEIAKNNMAIALTDLGTK-VKLEGDINQGVAY 288
G +Y + + A +E+ L A N ++ LGT VKLE + Y
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDL--------FYMLGTVLVKLE-QPKLALPY 147
Query: 289 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348
++A+ N + +A + G+ D A+ + +P A+A N GV Y ++
Sbjct: 148 LQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE 207
Query: 349 NLDKAVECYQMALSIKPNFSQSLN 372
N +KA+E A+ I+P+ +L+
Sbjct: 208 NREKALEMLDKAIDIQPDHMLALH 231
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 7/178 (3%)
Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
SE Y+ A + KA E A Y N + + +LE A+A Y++ L +
Sbjct: 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD------ 87
Query: 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321
++ A A G ++ + ++KAL D Y LG ++ + +A+
Sbjct: 88 -SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALP 146
Query: 322 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 379
+ + A N + EA G+ + LD+A+ + P + + N GV Y
Sbjct: 147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYA 204
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 9/162 (5%)
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
LAF + +A++LD A A+ G +Y + EA + + KAL A L V
Sbjct: 77 LAF--YDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTV 134
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
L L KLA + A++++ + A + G+ + D AL +
Sbjct: 135 LVKLEQP-KLA------LPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
+ P +A+A+ N GV Y + + E A+ ++ + + P+ +A
Sbjct: 188 QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 7/196 (3%)
Query: 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 298
GD E A + + + + I N A L+ + ++ + +A+Y KAL +
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVN-------ELERALAFYDKALELDSS 89
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
A A Y G Y + A +E A + LG + + A+ Q
Sbjct: 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149
Query: 359 MALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSI 418
A+ + N +++ G+ +G +P +A+A+ N GV Y +
Sbjct: 150 RAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR 209
Query: 419 SLAIDAYEQCLKIDPD 434
A++ ++ + I PD
Sbjct: 210 EKALEMLDKAIDIQPD 225
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 14/177 (7%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
+AAE++ KA+ + AI + L + + Y +AL++D A A
Sbjct: 41 KAAEAFTKAIEENKED-------AIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
YY G VY Y A +EKA + + +G + + A+ +R +
Sbjct: 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310
++ N A+ + L + EG +++ ++ + + +ADA YN GV Y
Sbjct: 154 LNENDTEARFQFGMCLAN-------EGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126
AL + +E + + EA G+CL + M A F+ + DP +A A + G+ Y
Sbjct: 144 ALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203
Query: 127 KDEGRLVEAAESYHKALSADPSY 149
+ +A E KA+ P +
Sbjct: 204 AYKENREKALEMLDKAIDIQPDH 226
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 167 LKLAGNTQDGIQK-------YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
LK GN Q ++ Y +A++++P A + N YS+L Y A+ E+A
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272
P Y++AY MG+ + A+A Y++ L + P+ E K+N+ IA L
Sbjct: 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNN 407
+N + AV Y A+ + P + N Y+ G +P Y++AY
Sbjct: 26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85
Query: 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445
+G+ A+ Y++ L++DPD+ N +A
Sbjct: 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198
Y KA+ +P+ A+ + + GN +Q A+ IDP Y+ AY +G
Sbjct: 35 YGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87
Query: 199 VVYSELMQYDTALGCYEKA 217
+ S L ++ A+ Y+KA
Sbjct: 88 LALSSLNKHVEAVAYYKKA 106
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 76 EKDSGNVEAHIGKG-ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134
E+DS E +G ++++N A + +A++L+P NA + Y G
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENF-EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG 64
Query: 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188
A + +A+ DP+Y A + + L+ L + + + Y +AL++DP
Sbjct: 65 AVQDCERAICIDPAYSKAYGRMGLALSSLNKHV-------EAVAYYKKALELDP 111
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329
T+ ++K+E + V +Y KA+ N A N AY ++ + A+ E A
Sbjct: 17 TEGNEQMKVE-NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 377
+P ++A +G+ + +AV Y+ AL + P+ +NL +
Sbjct: 76 DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 94/244 (38%), Gaps = 27/244 (11%)
Query: 41 STLKGFEGKD--ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG 98
S++ G E L A+ L R++F+D LA+ +LE D N++ + L
Sbjct: 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355
Query: 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+ ++ V P+ A GI Y ++ EA + K+ + DP + PA
Sbjct: 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA------ 409
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDT 209
S + G I Y A ++ Y LG+ + +L +Q
Sbjct: 410 -WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
AL Y+ L +GV+ N+ D+++AI ++ L + + + A
Sbjct: 469 ALFQYDPLLLNE---------LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519
Query: 270 TDLG 273
+LG
Sbjct: 520 ANLG 523
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 14/178 (7%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A +++ A +L + G+ + G ++ A E Y ++ A Y P ++L
Sbjct: 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE-YLQSSYALFQYDP------LLL 478
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGC 213
+LG + Q I + AL + + +A + NLG Y +L YD A+
Sbjct: 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271
+ L A + + ++Y ++ AI LA+SPN +A + + AL +
Sbjct: 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 96/260 (36%), Gaps = 33/260 (12%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC-LAIVLTDLGTSLKLAGNTQ 174
A A + GI + + L++A ++++ P+ P + LA+ L D N+Q
Sbjct: 239 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLAD-------KENSQ 289
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ + + +A+ ++P Y P YY+ G +Y L Y A ++KA P Y + +
Sbjct: 290 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL 349
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
+G + A + P A LTD GD + + Y A
Sbjct: 350 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD-------RGDFDTAIKQYDIAKR 402
Query: 295 YNWHYADAMYNLGVAYGEML----------------KFDMAIVFYELAFHFNPHCAEACN 338
+G G+ KF+ AI A +P +A
Sbjct: 403 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 462
Query: 339 NLGVIYKDRDNLDKAVECYQ 358
L + + +D+A+E ++
Sbjct: 463 GLAQLKLQMEKIDEAIELFE 482
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
YA + N G + F+ AI +Y+ A +P+ +N+ Y +L+K +E
Sbjct: 20 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 79
Query: 359 MALSIKPNFSQSL 371
AL IKP+ S++L
Sbjct: 80 KALEIKPDHSKAL 92
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 96/260 (36%), Gaps = 33/260 (12%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC-LAIVLTDLGTSLKLAGNTQ 174
A A + GI + + L++A ++++ P+ P + LA+ L D N+Q
Sbjct: 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLAD-------KENSQ 293
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ + + +A+ ++P Y P YY+ G +Y L Y A ++KA P Y + +
Sbjct: 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL 353
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294
+G + A + P A LTD GD + + Y A
Sbjct: 354 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD-------RGDFDTAIKQYDIAKR 406
Query: 295 YNWHYADAMYNLGVAYGEML----------------KFDMAIVFYELAFHFNPHCAEACN 338
+G G+ KF+ AI A +P +A
Sbjct: 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKI 466
Query: 339 NLGVIYKDRDNLDKAVECYQ 358
L + + +D+A+E ++
Sbjct: 467 GLAQLKLQMEKIDEAIELFE 486
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 299 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358
YA + N G + F+ AI +Y+ A +P+ +N+ Y +L+K +E
Sbjct: 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83
Query: 359 MALSIKPNFSQSL 371
AL IKP+ S++L
Sbjct: 84 KALEIKPDHSKAL 96
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYN 406
R KA++ Y ALSI P L+N Y+ G +P Y++A++
Sbjct: 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83
Query: 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462
LG+ D A +AYE+ ++ + N G + AM E K+ EA+R
Sbjct: 84 RLGLARFDMADYKGAKEAYEKGIEAE---GNGGSD---AMKRGLETTKRKIEEANR 133
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
I Y +AL I P N YS Q++ A E A + P Y++A+ +G+
Sbjct: 31 IDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90
Query: 237 NRGDLESAIACYERCLAVSPN 257
+ D + A YE+ + N
Sbjct: 91 DMADYKGAKEAYEKGIEAEGN 111
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
K EG A + Y KA+ A I L++ + +G + + A +
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
DP Y+ A+ LG+ ++ Y A YEK
Sbjct: 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEK 104
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 5/153 (3%)
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 367 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
+ LG+ Y NP LGV ++ G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFK 134
Query: 427 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 457
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 52/134 (38%)
Query: 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183
+ Y+D+G A Y +A+ A V LG + G G + +
Sbjct: 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68
Query: 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
L P LG+ Y ++ +YD A+ K A P+ +GV KN G +
Sbjct: 69 LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDE 128
Query: 244 AIACYERCLAVSPN 257
AI ++ L + PN
Sbjct: 129 AIDSFKIALGLRPN 142
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
Y + G+ + G A+ E+ ++ ++ +AL LG G +++G
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQV------YDADAFDVDVALH-LGIAYVKTGAVDRGTE 63
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347
+++L LG+ Y ++ K+D+A+ NP LGV K+
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNL 123
Query: 348 DNLDKAVECYQMALSIKPN 366
D+A++ +++AL ++PN
Sbjct: 124 GRFDEAIDSFKIALGLRPN 142
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
Y + G+ +++ +Y A+ E+ + ++G+ Y G ++ ER LA
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313
+P+ N+ +A T LG + V K N + + LGVA +
Sbjct: 71 DAPD------NVKVA-TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNL 123
Query: 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
+FD AI +++A P+ + + Y+ ++A+ ++ A
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 7/111 (6%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL--GCYEKA 217
L + G GN D +Q Y EA+K+DPH Y N Y++ Y A GC K
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC--KT 64
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL---AVSPNFEIAKNNM 265
+P + + Y + E A YE L A +P + NM
Sbjct: 65 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 75 LEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131
L+ D G EA +I G+ + A +A+++DP +A AH ++++ E
Sbjct: 27 LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXE 86
Query: 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK--IDPH 189
A E Y KAL++D A VL + G L ++ Q+ EA + + P
Sbjct: 87 PKLADEEYRKALASDSRN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE 139
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKA-ALERPMYAEAYCNMGVIYKNR 238
+ + NLG+V + + A +EK+ L R + A ++YK R
Sbjct: 140 RSRVFENLGLVSLQXKKPAQAKEYFEKSLRLNRNQPSVALEXADLLYKER 189
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 9/143 (6%)
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285
+AY +G+ Y RG+ E A + L + P+ A +A+ + E +
Sbjct: 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVF-------QTEXEPKLA 90
Query: 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH--FNPHCAEACNNLGVI 343
Y+KAL + A + N G E +++ A A P + NLG++
Sbjct: 91 DEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV 150
Query: 344 YKDRDNLDKAVECYQMALSIKPN 366
+A E ++ +L + N
Sbjct: 151 SLQXKKPAQAKEYFEKSLRLNRN 173
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
G+++ + ++ A+V E + + E +LG+ Y +D+ E + +++ P+
Sbjct: 15 GISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPD 74
Query: 367 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 427 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 457
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAYSYEQMGSHEEAL 164
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 41/173 (23%)
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
Y + G+ +++ +Y A+ E+ E ++G+ Y G ++ ER +A
Sbjct: 11 YRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIA 70
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313
+P+ N+ +A LG+ Y ++
Sbjct: 71 DAPD------NIKVATV-----------------------------------LGLTYVQV 89
Query: 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
K+D+A+ NP LGV + D+A++ +++AL ++PN
Sbjct: 90 QKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 13/170 (7%)
Query: 75 LEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131
L+ D G EA +I G+ + A +A+++DP +A AH ++++ E
Sbjct: 40 LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME 99
Query: 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK--IDPH 189
A E Y KAL++D A VL + G L ++ Q+ EA + + P
Sbjct: 100 PKLADEEYRKALASDSRN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE 152
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKA-ALERPMYAEAYCNMGVIYKNR 238
+ + NLG+V ++ + A +EK+ L R + A ++YK R
Sbjct: 153 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 202
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL-TDLGTKVKLEGDINQ 284
+AY +G+ Y RG+ E A + L + P+ A +A+ T++ K+ E
Sbjct: 51 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADE----- 105
Query: 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH--FNPHCAEACNNLGV 342
Y+KAL + A + N G E +++ A A P + NLG+
Sbjct: 106 ---EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 162
Query: 343 IYKDRDNLDKAVECYQMALSIKPN 366
+ +A E ++ +L + N
Sbjct: 163 VSLQMKKPAQAKEYFEKSLRLNRN 186
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 367 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 427 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 457
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%)
Query: 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 222
LG + G G + +L P LG+ Y ++ +YD A+ K A P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+ +GV N G + AI ++ L + PN
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%)
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
LG G +++G +++L LG+ Y ++ K+D+A+ NP
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
LGV + D+A++ +++AL ++PN
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
Y + G+ +++ +Y A+ E+ + ++G+ Y G ++ ER LA
Sbjct: 11 YEDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313
+P+ N+ +A T LG + V K N + + LGVA +
Sbjct: 71 DAPD------NVKVA-TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123
Query: 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
+FD AI +++A P+ + + Y+ ++A+ ++ A
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 307 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 367 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 426
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 427 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 457
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 51/134 (38%)
Query: 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183
+ Y+D+G A Y +A+ A V LG + G G + +
Sbjct: 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68
Query: 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
L P LG+ Y ++ +YD A+ K A P+ +GV N G +
Sbjct: 69 LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128
Query: 244 AIACYERCLAVSPN 257
AI ++ L + PN
Sbjct: 129 AIDSFKIALGLRPN 142
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287
Y + G+ + G A+ E+ ++ ++ +AL LG G +++G
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQV------YDADAFDVDVALH-LGIAYVKTGAVDRGTE 63
Query: 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347
+++L LG+ Y ++ K+D+A+ NP LGV +
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123
Query: 348 DNLDKAVECYQMALSIKPN 366
D+A++ +++AL ++PN
Sbjct: 124 GRFDEAIDSFKIALGLRPN 142
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
Y + G+ +++ +Y A+ E+ + ++G+ Y G ++ ER LA
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 254 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 313
+P+ N+ +A T LG + V K N + + LGVA +
Sbjct: 71 DAPD------NVKVA-TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123
Query: 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360
+FD AI +++A P+ + + Y+ ++A+ ++ A
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALE-----RPMY 224
G + + +A +++P YAP + G+VY+ L + D A ++A ALE R
Sbjct: 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
AE Y +M G L+ A+A Y + L +P
Sbjct: 158 AELYLSM-------GRLDEALAQYAKALEQAPK 183
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 5/175 (2%)
Query: 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255
LGV L +YD AL +E+A E P EA + G + A+ + +A +
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69
Query: 256 PNFE---IAKNNMAIAL-TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311
P + + + +AL + + +G + Q ++ K A N YA G+ Y
Sbjct: 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129
Query: 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
+ + D A + A E + L +Y LD+A+ Y AL P
Sbjct: 130 LLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG-CY 214
LA+++ + G G+ ++ Y EA+K +P A Y N Y++L+++ AL C
Sbjct: 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
E LE P + + Y + D A+ Y++ L
Sbjct: 75 ECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 44/100 (44%)
Query: 264 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323
++A+ + + G + +GD Q + +Y +A+ N A N Y ++L+F +A+
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363
E P + + + KA++ YQ AL +
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 368 SQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427
+Q L GV+Y G P E +N LG+ AG+ A +A++
Sbjct: 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDS 102
Query: 428 CLKIDPDSRNAGQNRLLAMNYINEGHDDKL 457
L++DP A NR +A+ Y G DKL
Sbjct: 103 VLELDPTYNYAHLNRGIALYY---GGRDKL 129
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
D A Y GV+Y L A + +A RP E + +G+ G+ ++A
Sbjct: 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYE 98
Query: 247 CYERCLAVSPNFEIAKNNMAIAL 269
++ L + P + A N IAL
Sbjct: 99 AFDSVLELDPTYNYAHLNRGIAL 121
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
+G+ + LA + FS+A+ + P + GI G A E++ L DP
Sbjct: 49 RGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108
Query: 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188
+Y A I L G KLA QD + +Y+ DP
Sbjct: 109 TYNYAHLNRGIALY-YGGRDKLA---QDDLLAFYQDDPNDP 145
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 6/138 (4%)
Query: 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPT 400
GV+Y A + AL+I+P+ + N LG+ T G +PT
Sbjct: 50 GVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109
Query: 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460
Y A+ N G+ G LA D + DP+ LA ++E ++ +
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169
Query: 461 H------RDWGKRFMRLY 472
H WG + Y
Sbjct: 170 HFEKSDKEQWGWNIVEFY 187
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359
A +Y GV Y + +A + A P E N LG+ N D A E +
Sbjct: 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDS 102
Query: 360 ALSIKPNFSQSLNNLGV 376
L + P ++ + N G+
Sbjct: 103 VLELDPTYNYAHLNRGI 119
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
D + A G+LY G A + +AL+ P L I LT AG
Sbjct: 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQ-------AG 91
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGV 199
N + + L++DP Y A+ N G+
Sbjct: 92 NFDAAYEAFDSVLELDPTYNYAHLNRGI 119
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 45/94 (47%)
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
LG+ + + D+ + +A + + + + Y E ++D+A + +
Sbjct: 3 LGSXRRSKADVERYIASVQGSTPSPRQKSXKGFYFAKLYXEAKEYDLAKKYICTYINVQE 62
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365
+A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 63 RDPKAHRFLGLLYELEENTDKAVECYRRSVELNP 96
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFH--------FNPHCAEACNNLGVIYKDRDNLD 351
A + NL V YG+ K+ A + A F+P A+ NNL ++ +++ +
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144
Query: 352 KAVECYQMALSI--------KPNFSQSLNNLGVVYTVQG 382
+ Y+ AL I PN +++ NNL Y QG
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 65/191 (34%), Gaps = 28/191 (14%)
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193
+A S AL +DP E +V ++ LK+ Q+ + +AL I P A
Sbjct: 26 QATASIEDALKSDPK----NELAWLVRAEIYQYLKVNDKAQESFR---QALSIKPDSAEI 78
Query: 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC---NMGVIYKNRGDLESAIACYER 250
N G + Y AL P Y Y N G+ +G A A +R
Sbjct: 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR 138
Query: 251 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK-----------ALYYNWHY 299
LA P F A +L L G + Y+KK L W
Sbjct: 139 SLAAQPQF-------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKI 191
Query: 300 ADAMYNLGVAY 310
A A+ N AY
Sbjct: 192 AKALGNAQAAY 202
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 351 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYN---N 407
DKA E ++ ALSIKP+ ++ NN G + +PTY Y N
Sbjct: 59 DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN 118
Query: 408 LGVLYRDAGSISLAIDAYEQCLKIDP 433
G+ G LA ++ L P
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQP 144
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 45/95 (47%)
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
LG+ + + D+ + +A + + + + Y E ++D+A + +
Sbjct: 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE 62
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
+A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 63 RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT 97
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 45/95 (47%)
Query: 272 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 331
LG+ + + D+ + +A + + + + Y E ++D+A + +
Sbjct: 3 LGSMRRSKADVERYIASVQGSTPSPRQKSMKGFYFAKLYYEAKEYDLAKKYICTYINVQE 62
Query: 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366
+A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 63 RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT 97
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFH--------FNPHCAEACNNLGVIYKDRDNLD 351
A + NL V YG+ K+ A + A F+P A+ +NL ++ +++ +
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAE 144
Query: 352 KAVECYQMALSI--------KPNFSQSLNNLGVVYTVQG 382
+ Y+ AL I PN +++ NNL Y QG
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQ 381
+P A NNL V+Y R +A + AL I+ P+ ++ L+NL ++ Q
Sbjct: 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQ 140
Query: 382 GXX--------XXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
G +P A+ NNL Y G A Y++ L
Sbjct: 141 GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241
+AL + P Y+P L KA P EA+ +G +Y +GD+
Sbjct: 110 KALNVTPDYSPEAEVL----------------LSKAVKLEPELVEAWNQLGEVYWKKGDV 153
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
SA C+ L N +++ N+++ L L T
Sbjct: 154 TSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQT 185
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALGCYE 215
+LG + L GN +D + + + L I + AY NLG Y L +++TA Y+
Sbjct: 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYK 73
Query: 216 KAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
K L +R + A++ ++G Y D E AI + + LA++ +
Sbjct: 74 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 35/168 (20%)
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 280
R A+ N+G + G+ A+ +E+ L ++ F K IA ++LG G
Sbjct: 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLG 63
Query: 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340
+ YYKK L LK D A+ A++C +L
Sbjct: 64 EFETASEYYKKTLLL---------------ARQLK-DRAVE------------AQSCYSL 95
Query: 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------NLGVVYTVQG 382
G Y + +KA++ + L+I + +LG YT G
Sbjct: 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 143
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQ 381
+P A NNL V+Y R +A + AL I+ P+ ++ LNNL ++ Q
Sbjct: 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166
Query: 382 GX--------XXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429
G +P A+ NNL Y G A Y++ L
Sbjct: 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 273 GTKVKLEGDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAIVFYE---- 324
G ++ GD GV++++ A+ + A+Y+ LG AY + + A+ ++
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75
Query: 325 LAFHFNPHCAEA--CNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGV 376
LA EA NLG K N D+A+ C Q L I K +++L NLG
Sbjct: 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135
Query: 377 VYTVQG 382
VY +G
Sbjct: 136 VYHAKG 141
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALGCYE 215
+LG + L GN +D + + + L I + AY NLG Y L +++TA Y+
Sbjct: 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251
Query: 216 KAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
K L +R + A++ ++G Y D E AI + + LA++
Sbjct: 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 91/236 (38%), Gaps = 45/236 (19%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAA-LERPM-----YAEAYCNMGVIYKNRGD---- 240
A A NLG L +D A+ C ++ + R + A A N+G +Y +G
Sbjct: 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 146
Query: 241 ----------------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
L++A+ YE L++ + A +LG L G+
Sbjct: 147 PGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRD 205
Query: 285 GVAYYKKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCA 334
V +++ L + D A NLG AY + +F+ A +Y+ LA
Sbjct: 206 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265
Query: 335 EA--CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------NLGVVYTVQG 382
EA C +LG Y + +KA++ + L+I + + +LG YT G
Sbjct: 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG 321
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALGCYE 215
+LG + L GN +D + + + L I + AY NLG Y L +++TA Y+
Sbjct: 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247
Query: 216 KAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
K L +R + A++ ++G Y D E AI + + LA++ +
Sbjct: 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 273 GTKVKLEGDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAIVFYE---- 324
G ++ GD GV++++ A+ + A+Y+ LG AY + + A+ ++
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71
Query: 325 LAFHFNPHCAEA--CNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGV 376
LA EA NLG K N D+A+ C Q L I K +++L NLG
Sbjct: 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 131
Query: 377 VYTVQG 382
VY +G
Sbjct: 132 VYHAKG 137
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 45/236 (19%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAA-LERPM-----YAEAYCNMGVIYKNRGD---- 240
A A NLG L +D A+ C ++ + R + A A N+G +Y +G
Sbjct: 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142
Query: 241 ----------------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
L++A+ YE L++ + A +LG L G+
Sbjct: 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRD 201
Query: 285 GVAYYKKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCA 334
V +++ L + D A NLG AY + +F+ A +Y+ LA
Sbjct: 202 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 261
Query: 335 EA--CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------NLGVVYTVQG 382
EA C +LG Y + +KA++ + L+I + +LG YT G
Sbjct: 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 105/277 (37%), Gaps = 51/277 (18%)
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQY 207
+A CL + L G L +G+ + G+ + A+++ + Y LG Y L Y
Sbjct: 2 SASCLELALE--GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59
Query: 208 DTALGCYEK-AALERPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
AL + L R + A+A N+G K G+ + AI C +R L +S
Sbjct: 60 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-D 118
Query: 262 KNNMAIALTDLGTKVKLEGD--------------------INQGVAYYKKALYYNWHYAD 301
K A AL +LG +G + V Y++ L D
Sbjct: 119 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD 178
Query: 302 ------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAE--ACNNLGVIYKDRDN 349
A NLG + + F A++ +E +A F AE A +NLG Y
Sbjct: 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238
Query: 350 LDKAVECYQMALSIKPNF------SQSLNNLGVVYTV 380
+ A E Y+ L + +QS +LG YT+
Sbjct: 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+LG L AG D + +++ A+ DP AYY V+ + + AL K +
Sbjct: 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+ A G + +G L+ A +++ L +P+
Sbjct: 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 40/97 (41%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L L + + DAL+ + ++ D N A+ + + A ++ ++L
Sbjct: 30 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
A G L +G+L EA + + K L ++PS
Sbjct: 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALGCYE 215
+LG + L GN +D + + + L I + AY NLG Y L +++TA Y+
Sbjct: 190 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 249
Query: 216 KAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
K L +R + A++ ++G Y D E AI + + LA++ +
Sbjct: 250 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 299
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 273 GTKVKLEGDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAIVFYE---- 324
G ++ GD GV++++ A+ + A+Y+ LG AY + + A+ ++
Sbjct: 14 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 73
Query: 325 LAFHFNPHCAEA--CNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGV 376
LA EA NLG K N D+A+ C Q L I K +++L NLG
Sbjct: 74 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 133
Query: 377 VYTVQG 382
VY +G
Sbjct: 134 VYHAKG 139
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 45/236 (19%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAA-LERPM-----YAEAYCNMGVIYKNRGD---- 240
A A NLG L +D A+ C ++ + R + A A N+G +Y +G
Sbjct: 85 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 144
Query: 241 ----------------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284
L++A+ YE L++ + A +LG L G+
Sbjct: 145 PGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRD 203
Query: 285 GVAYYKKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCA 334
V +++ L + D A NLG AY + +F+ A +Y+ LA
Sbjct: 204 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 263
Query: 335 EA--CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------NLGVVYTVQG 382
EA C +LG Y + +KA++ + L+I + +LG YT G
Sbjct: 264 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 319
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 105/277 (37%), Gaps = 51/277 (18%)
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQY 207
+A CL + L G L +G+ + G+ + A+++ + Y LG Y L Y
Sbjct: 4 SASCLELALE--GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 61
Query: 208 DTALGCYEK-AALERPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
AL + L R + A+A N+G K G+ + AI C +R L +S
Sbjct: 62 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-D 120
Query: 262 KNNMAIALTDLGTKVKLEGD--------------------INQGVAYYKKALYYNWHYAD 301
K A AL +LG +G + V Y++ L D
Sbjct: 121 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD 180
Query: 302 ------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAE--ACNNLGVIYKDRDN 349
A NLG + + F A++ +E +A F AE A +NLG Y
Sbjct: 181 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 240
Query: 350 LDKAVECYQMALSIKPNF------SQSLNNLGVVYTV 380
+ A E Y+ L + +QS +LG YT+
Sbjct: 241 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 277
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 16/134 (11%)
Query: 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAI 320
M + L G ++ GD GVA+++ A+ + A+Y+ LG AY + ++ A+
Sbjct: 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAM 106
Query: 321 VFYE----LAFHFNPHCAEA--CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN-- 372
+++ LA N EA NLG K D+A C + L++ L+
Sbjct: 107 QYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166
Query: 373 ----NLGVVYTVQG 382
NLG VY +G
Sbjct: 167 RALYNLGNVYHAKG 180
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 106/272 (38%), Gaps = 50/272 (18%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALK-----------IDPHYAPAYYNLGVVYSE 203
CL + L G L AG+ + G+ + A++ I AY+ LG Y++
Sbjct: 48 CLELALE--GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD-YNK 104
Query: 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
MQY K+ +R A++ N+G K G + A C ER L ++ +
Sbjct: 105 AMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-DRL 163
Query: 264 NMAIALTDLG----TKVKLEGDINQG-------------VAYYKKALYYNWHYAD----- 301
+ AL +LG K K G N G V +Y++ L D
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223
Query: 302 -AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAE--ACNNLGVIYKDRDNLDKAV 354
A NLG Y + F AI ++ +A F AE A +NLG + + A
Sbjct: 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283
Query: 355 ECYQMALSIKPNF------SQSLNNLGVVYTV 380
E Y+ L++ +QS +LG YT+
Sbjct: 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTL 315
>pdb|4I17|A Chain A, Crystal Structure Of A Hypothetical Protein (Bf2334) From
Bacteroides Fragilis Nctc 9343 At 1.50 A Resolution
Length = 228
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 5/155 (3%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218
L + G A N +KY E LK+ + + YN GV + +Y A ++ A
Sbjct: 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI 69
Query: 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278
+ A AY Y++ + + IA + P + AI G K +
Sbjct: 70 KKNYNLANAYIGKSAAYRDXKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ 129
Query: 279 EGDINQGVAYYKKA---LYYNWHYADAMYNLGVAY 310
G+I + YK A W DA+Y+LGV +
Sbjct: 130 AGNIEKAEENYKHATDVTSKKWK-TDALYSLGVLF 163
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122
K+ +A ++I ++K+ A+IGK + + + +E +K P NA
Sbjct: 57 KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDXKNNQEYIATLTEGIKAVPGNATIEKLY 116
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
I Y EG+ + A + K A+ +YK A + +
Sbjct: 117 AIYYLKEGQKFQQAGNIEK---AEENYKHATDVTS 148
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 8/157 (5%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
EG DAL+ N + K+ + L L + +V A+ G+C + A D F
Sbjct: 13 EGNDALNAKNYAVAFEKYSEYLKL-----TNNQDSVTAY-NCGVCADNIKKYKEAADYFD 66
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
A+K + A A+ Y+D E + + + A P + AI G
Sbjct: 67 IAIKKNYNLANAYIGKSAAYRDXKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQK 126
Query: 167 LKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVY 201
+ AGN + + Y A + A Y+LGV++
Sbjct: 127 FQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY----GEMLKFDMAIVFYE 324
L LG K E D Q Y++KA + +NLGV Y G A FY
Sbjct: 9 LVGLGAKSYKEKDFTQAKKYFEKAC--DLKENSGCFNLGVLYYQGQGVEKNLKKAASFYA 66
Query: 325 LAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 378
A N + C+ LG +Y N +KA++ Y A +K +++ +LG +Y
Sbjct: 67 KACDLNY--SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIY 120
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+LG L AG D + +++ A+ DP AYY V+ + AL K +
Sbjct: 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLK 90
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+ A G + +G L+ A +++ L +P+
Sbjct: 91 XDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 37/86 (43%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122
+ DAL+ + ++ D N A+ + + A ++ ++L A
Sbjct: 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQR 100
Query: 123 GILYKDEGRLVEAAESYHKALSADPS 148
G L +G+L EA + + K L ++PS
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI DLG + + + Y +A+++DP Y N VY E ++ + EK
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 217 AA-------LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
A + + A+A G ++ + DL A+ + R L+ + E+ K
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120
>pdb|2KAT|A Chain A, Solution Structure Of Protein Bpp2914 From Bordetella
Parapertussis. Northeast Structural Genomics Consortium
Target Bpr206
Length = 115
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 195 YNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
+ LG Y+E Q+D AL + +AAL+ P Y+ A+ +G + +GD A +E LA
Sbjct: 23 FTLGKTYAEHEQFDAALP-HLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Query: 254 VS 255
+
Sbjct: 82 AA 83
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
L+ VL LK++ + Q + EAL+IDP A Y + L +YD AL +
Sbjct: 273 LSCVLNIGACKLKMS-DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLK 331
Query: 216 KA 217
KA
Sbjct: 332 KA 333
>pdb|4HOU|A Chain A, Crystal Structure Of N-terminal Human Ifit1
pdb|4HOU|B Chain B, Crystal Structure Of N-terminal Human Ifit1
Length = 273
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 67 ALALYEIVLEKDSGNVEAHIG--------KGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118
A A +E VLE D N E+ G G L +N + +AV+L+P N
Sbjct: 154 AKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNHKPFSLLPLRQAVRLNPDNGYI 213
Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPS 148
+ +DEG+ E + +AL+ S
Sbjct: 214 KVLLALKLQDEGQEAEGEKYIEEALANXSS 243
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+LG L AG D + +++ A+ DP AYY V+ + AL K +
Sbjct: 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALK 67
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+ A G + +G L+ A +++ L +P+
Sbjct: 68 XDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 41/103 (39%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
L L + + DAL+ + ++ D N A+ + + A ++ + L
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIAL 66
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
A G L +G+L EA + + K L ++PS + E
Sbjct: 67 KXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE 109
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
N + + E ++ DP Y YY+LG +Y L + D A+ Y
Sbjct: 22 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
N + + E ++ DP Y YY+LG +Y L + D A+ Y
Sbjct: 21 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 63
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357
YA A+ + G + K+D AI +Y A +NL Y +L K VE
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMS 62
Query: 358 QMALSIKPNFSQSL 371
AL +KP++S+ L
Sbjct: 63 TKALELKPDYSKVL 76
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 457 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPL 510
F DWG +S + +W DPE+ G++ D T V F++A L
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEV--FVQADL 151
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%)
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
G+ ++ Y EA+K DP A Y N ++LM++ AL + + + Y
Sbjct: 27 GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
+ A YE L V P+ E A+
Sbjct: 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 457 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 509
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 108 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 150
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 457 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 509
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 96 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 138
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 457 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 509
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 152
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 457 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 509
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 152
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296
+G A+ CY++ + P + +N A+AL LG + QG+ Y A +
Sbjct: 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75
Query: 297 WHYADAMYNLGVAYGEMLKFDMAIV 321
+ Y L +A G + + +V
Sbjct: 76 IR-SKLQYRLELAQGAVGSVQIPVV 99
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
A + ++ I+ Y +A++++P A Y N + Y Y ALG +A Y + Y
Sbjct: 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
G +A+ YE + V P+ + AK
Sbjct: 79 RRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 80/223 (35%), Gaps = 33/223 (14%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-------------GRLA 101
A R +N + AL L + LE + H G+C + Q + +L
Sbjct: 256 AKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQMIQIKKATHNRPKGKDKLK 315
Query: 102 FDS--------FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
D F A++ D A A+T +Y + G+ A + + KAL +
Sbjct: 316 VDELISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLENITDDHK 375
Query: 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213
+ + + NT I Y EALK+ +P L S L + T C
Sbjct: 376 HQIHYHYGRFQEFHRKSENT--AIHHYLEALKVKDR-SPLRTKLT---SALKKLSTKRLC 429
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
+ + ++ +G +YK G+ A YE+ + P
Sbjct: 430 H------NALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDP 466
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 44/221 (19%)
Query: 95 QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
+N A + +A+++ P ++ H G+ Y+ ++++ ++ H +P +
Sbjct: 262 KNSWNKALELLKKALEVTPTSSFLHHQMGLCYR--AQMIQIKKATHN--------RPKGK 311
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
LK+ I + A++ D +A AY +L +Y+E QY A +
Sbjct: 312 ----------DKLKVDELISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIF 361
Query: 215 EKAALERPMYAEAYCNMGVIYK-----NRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
KA + + + Y +R +AI Y L V + + + AL
Sbjct: 362 RKALRLENITDDHKHQIHYHYGRFQEFHRKSENTAIHHYLEALKVKDRSPL-RTKLTSAL 420
Query: 270 TDLGTK------------------VKLEGDINQGVAYYKKA 292
L TK KLEG+ Q YY+KA
Sbjct: 421 KKLSTKRLCHNALDVQSLSALGFVYKLEGEKRQAAEYYEKA 461
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450
EAY +G YR G A++ Y+ ++++PDS A Q R + M+ +N
Sbjct: 36 EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP-ALQARKMVMDILN 82
>pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox: Structure At 1.8
Angstrom Resolution And Biochemical Characterizations Of
The A128v Mutant Implicated In Chronic Granulomatous
Disease
Length = 213
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
+EG L + + AL A + + + + ++G + N + + + ++ D
Sbjct: 11 NEGVLAADKKDWKGALDA---FSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
H A AY+ G++Y + +YD A+ ++A ++
Sbjct: 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435
E Y GVL DAG+ + +ID +E+ +++DP+
Sbjct: 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE 39
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 90 ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143
+C +++ A D +A+ L PQNA ++ G ++ G A + +H AL
Sbjct: 245 VCRKLKKYAE-ALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHTAL 297
>pdb|1WM5|A Chain A, Crystal Structure Of The N-Terminal Tpr Domain (1-203) Of
P67phox
Length = 208
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
+EG L + + AL A + + + + ++G + N + + + ++ D
Sbjct: 16 NEGVLAADKKDWKGALDA---FSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 72
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
H A AY+ G++Y + +YD A+ ++A ++
Sbjct: 73 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 105
>pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX
Length = 203
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
+EG L + + AL A + + + + ++G + N + + + ++ D
Sbjct: 11 NEGVLAADKKDWKGALDA---FSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
H A AY+ G++Y + +YD A+ ++A ++
Sbjct: 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 33/223 (14%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-------------GRLA 101
A R +N + AL L + LE + H G+C + Q + +L
Sbjct: 256 AKFYRRKNSWNKALELLKKALEVTPTSSFLHHQXGLCYRAQXIQIKKATHNRPKGKDKLK 315
Query: 102 FDS--------FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
D F A + D A A+T Y + G+ A + + KAL +
Sbjct: 316 VDELISSAIFHFKAAXERDSXFAFAYTDLANXYAEGGQYSNAEDIFRKALRLENITDDHK 375
Query: 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213
+ + + NT I Y EALK+ +P L S L + T C
Sbjct: 376 HQIHYHYGRFQEFHRKSENT--AIHHYLEALKVKDR-SPLRTKLT---SALKKLSTKRLC 429
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
+ + ++ +G +YK G+ A YE+ + P
Sbjct: 430 H------NALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDP 466
>pdb|2BOL|A Chain A, Crystal Structure And Assembly Of Tsp36, A Metazoan Small
Heat Shock Protein
pdb|2BOL|B Chain B, Crystal Structure And Assembly Of Tsp36, A Metazoan Small
Heat Shock Protein
Length = 314
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 103 DSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA--ESYHKALSADPSYKPAAECLAIVL 160
+S ++ L P H I D+ ++EA E +KA+ P A + +
Sbjct: 154 ESVGRSIPLPPSVDRNHIQATITT-DDVLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQE 212
Query: 161 TDLGTSLKLA---GNTQDGIQKYYEALKIDPHYAP 192
L K +DG +K + LK+DPH+AP
Sbjct: 213 RQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAP 247
>pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
Resolution
pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
Resolution
Length = 452
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Query: 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201
AL+ E A +L+ G +L AGN + I L++ P Y A LG +
Sbjct: 104 ALTGSSGKTSVKEXTAAILSQCGNTLYTAGNLNNDIGVPXTLLRLTPEYDYAVIELGANH 163
Query: 202 SELMQYDTALGCYE--KAALERPMYAEAYCNMGVIYKNRGDLESAI 245
+ + +L E + E + ++ + K +G++ S +
Sbjct: 164 QGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,089,015
Number of Sequences: 62578
Number of extensions: 807189
Number of successful extensions: 2712
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2140
Number of HSP's gapped (non-prelim): 425
length of query: 625
length of database: 14,973,337
effective HSP length: 105
effective length of query: 520
effective length of database: 8,402,647
effective search space: 4369376440
effective search space used: 4369376440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)