Query 006937
Match_columns 625
No_of_seqs 1613 out of 3541
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 16:37:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1E-102 3E-107 734.5 46.0 561 46-623 114-715 (966)
2 COG3914 Spy Predicted O-linked 100.0 4.9E-50 1.1E-54 379.9 30.3 328 282-624 47-393 (620)
3 KOG4626 O-linked N-acetylgluco 100.0 2.9E-48 6.3E-53 367.4 37.6 400 47-462 47-480 (966)
4 PF13844 Glyco_transf_41: Glyc 100.0 6.9E-44 1.5E-48 343.6 10.4 133 488-624 1-135 (468)
5 TIGR00990 3a0801s09 mitochondr 100.0 1.8E-37 3.9E-42 328.3 53.7 383 48-438 127-578 (615)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-35 5.3E-40 332.2 55.1 405 46-461 463-894 (899)
7 PRK11447 cellulose synthase su 100.0 5.5E-34 1.2E-38 320.8 54.8 412 45-463 178-736 (1157)
8 PRK11447 cellulose synthase su 100.0 2E-34 4.3E-39 324.4 50.9 367 53-430 274-739 (1157)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-33 2.5E-38 318.7 55.1 392 50-459 433-824 (899)
10 PRK15174 Vi polysaccharide exp 100.0 1.1E-33 2.4E-38 297.8 49.8 394 45-466 39-437 (656)
11 TIGR00990 3a0801s09 mitochondr 100.0 7.2E-33 1.6E-37 293.3 48.9 364 82-462 127-566 (615)
12 PRK15174 Vi polysaccharide exp 100.0 1.4E-32 3E-37 289.5 45.5 368 59-440 16-390 (656)
13 KOG0547 Translocase of outer m 100.0 1.8E-31 3.9E-36 247.3 39.1 382 48-436 115-571 (606)
14 PRK10049 pgaA outer membrane p 100.0 1.3E-30 2.8E-35 280.7 50.1 410 45-466 12-455 (765)
15 KOG2002 TPR-containing nuclear 100.0 6E-31 1.3E-35 263.4 40.6 331 45-375 161-571 (1018)
16 PRK10049 pgaA outer membrane p 100.0 6E-31 1.3E-35 283.3 43.2 380 44-439 45-464 (765)
17 PRK09782 bacteriophage N4 rece 100.0 1.2E-29 2.5E-34 272.5 51.3 389 44-439 40-714 (987)
18 KOG2002 TPR-containing nuclear 100.0 2.9E-30 6.4E-35 258.5 38.4 395 45-446 304-760 (1018)
19 KOG0548 Molecular co-chaperone 100.0 5.2E-29 1.1E-33 234.9 38.3 390 49-447 3-471 (539)
20 PRK09782 bacteriophage N4 rece 100.0 9.2E-27 2E-31 250.3 46.1 361 58-436 352-745 (987)
21 KOG0547 Translocase of outer m 100.0 5.6E-27 1.2E-31 217.7 34.4 361 83-459 116-558 (606)
22 KOG1126 DNA-binding cell divis 100.0 4.5E-28 9.8E-33 234.4 27.9 306 118-437 319-626 (638)
23 KOG1173 Anaphase-promoting com 100.0 1.7E-26 3.7E-31 218.7 36.8 389 46-442 47-529 (611)
24 PRK14574 hmsH outer membrane p 100.0 4.7E-25 1E-29 232.4 49.3 392 44-443 30-491 (822)
25 KOG1155 Anaphase-promoting com 100.0 1.2E-25 2.6E-30 207.7 39.1 361 51-432 167-537 (559)
26 KOG1126 DNA-binding cell divis 100.0 3.2E-27 6.9E-32 228.6 29.2 296 57-400 328-623 (638)
27 KOG2076 RNA polymerase III tra 100.0 1.8E-25 3.9E-30 223.0 41.4 376 46-428 137-552 (895)
28 KOG1155 Anaphase-promoting com 100.0 6.1E-25 1.3E-29 203.0 41.3 374 47-432 77-496 (559)
29 KOG0624 dsRNA-activated protei 100.0 2.4E-25 5.3E-30 197.7 34.8 324 44-367 34-374 (504)
30 PRK11788 tetratricopeptide rep 100.0 3.8E-25 8.2E-30 223.1 38.9 308 83-430 36-346 (389)
31 KOG2003 TPR repeat-containing 100.0 7.4E-26 1.6E-30 208.2 29.3 377 48-439 201-697 (840)
32 PRK11788 tetratricopeptide rep 100.0 9.4E-25 2E-29 220.3 38.2 302 47-396 34-346 (389)
33 KOG2003 TPR repeat-containing 99.9 1.4E-24 3.1E-29 199.7 31.7 369 50-427 239-718 (840)
34 KOG0624 dsRNA-activated protei 99.9 3.3E-24 7.1E-29 190.6 32.3 328 78-441 34-380 (504)
35 PRK14574 hmsH outer membrane p 99.9 6.2E-23 1.3E-27 216.5 46.4 374 52-439 72-521 (822)
36 KOG4162 Predicted calmodulin-b 99.9 3.7E-23 8E-28 203.2 39.7 391 46-438 321-790 (799)
37 KOG1173 Anaphase-promoting com 99.9 1.9E-23 4.2E-28 198.2 35.7 403 46-459 14-510 (611)
38 KOG0495 HAT repeat protein [RN 99.9 6.3E-22 1.4E-26 190.4 43.8 380 60-456 418-869 (913)
39 KOG0495 HAT repeat protein [RN 99.9 2.8E-22 6.1E-27 192.7 41.4 375 48-441 516-890 (913)
40 KOG1174 Anaphase-promoting com 99.9 1.5E-22 3.3E-27 184.4 36.0 397 30-442 79-511 (564)
41 KOG2076 RNA polymerase III tra 99.9 4.2E-22 9E-27 199.2 41.4 337 82-432 139-513 (895)
42 KOG0548 Molecular co-chaperone 99.9 1.6E-22 3.4E-27 191.4 33.8 363 49-427 37-485 (539)
43 KOG1127 TPR repeat-containing 99.9 1.1E-21 2.5E-26 197.0 30.6 362 60-427 470-909 (1238)
44 TIGR00540 hemY_coli hemY prote 99.9 1.1E-20 2.4E-25 189.4 37.9 302 119-431 87-399 (409)
45 PLN03218 maturation of RBCL 1; 99.9 1.2E-18 2.6E-23 189.5 53.9 366 47-430 369-747 (1060)
46 TIGR00540 hemY_coli hemY prote 99.9 2.5E-20 5.5E-25 186.8 38.3 302 48-396 84-398 (409)
47 PF13429 TPR_15: Tetratricopep 99.9 1.5E-23 3.2E-28 200.0 13.7 262 161-431 12-277 (280)
48 KOG1156 N-terminal acetyltrans 99.9 2.3E-19 5.1E-24 173.3 41.8 251 47-311 6-264 (700)
49 KOG1129 TPR repeat-containing 99.9 1.5E-20 3.3E-25 166.3 29.2 382 51-442 7-469 (478)
50 PRK10747 putative protoheme IX 99.9 9.3E-20 2E-24 181.6 38.8 303 119-432 87-391 (398)
51 KOG1174 Anaphase-promoting com 99.9 1E-19 2.2E-24 166.2 33.9 309 88-411 204-514 (564)
52 KOG4162 Predicted calmodulin-b 99.9 9.8E-20 2.1E-24 179.4 36.2 349 47-402 356-788 (799)
53 PLN03081 pentatricopeptide (PP 99.9 7.6E-20 1.7E-24 197.1 38.3 400 46-466 121-556 (697)
54 PLN03218 maturation of RBCL 1; 99.9 8.3E-18 1.8E-22 182.9 53.2 360 55-433 413-785 (1060)
55 PF13429 TPR_15: Tetratricopep 99.9 1.3E-22 2.9E-27 193.5 14.3 263 50-362 10-276 (280)
56 PLN03081 pentatricopeptide (PP 99.9 1.4E-18 3E-23 187.3 46.7 359 50-434 89-493 (697)
57 COG3063 PilF Tfp pilus assembl 99.9 2.2E-20 4.8E-25 158.1 24.4 216 41-261 28-243 (250)
58 PRK12370 invasion protein regu 99.9 5E-20 1.1E-24 191.6 32.6 187 64-257 277-473 (553)
59 PLN03077 Protein ECB2; Provisi 99.9 9.2E-19 2E-23 193.5 44.4 352 86-460 327-713 (857)
60 PRK12370 invasion protein regu 99.9 6.9E-20 1.5E-24 190.6 32.8 250 171-430 275-534 (553)
61 PRK10747 putative protoheme IX 99.9 6.6E-19 1.4E-23 175.5 37.5 296 49-397 85-390 (398)
62 KOG1125 TPR repeat-containing 99.9 8.5E-21 1.8E-25 181.3 21.9 239 161-399 289-529 (579)
63 KOG0550 Molecular chaperone (D 99.9 5.4E-21 1.2E-25 174.7 19.3 303 43-434 44-353 (486)
64 KOG1129 TPR repeat-containing 99.9 1.3E-20 2.9E-25 166.7 20.6 242 85-338 226-467 (478)
65 KOG1125 TPR repeat-containing 99.9 1E-20 2.2E-25 180.8 20.4 266 47-319 284-561 (579)
66 KOG2376 Signal recognition par 99.9 5.5E-17 1.2E-21 155.5 40.5 392 48-450 12-506 (652)
67 PRK11189 lipoprotein NlpI; Pro 99.8 7E-19 1.5E-23 167.7 26.7 123 62-191 40-166 (296)
68 PRK11189 lipoprotein NlpI; Pro 99.8 1.9E-18 4.1E-23 164.8 29.5 244 94-349 38-286 (296)
69 KOG1127 TPR repeat-containing 99.8 7.3E-19 1.6E-23 177.1 27.4 378 51-444 402-892 (1238)
70 KOG1156 N-terminal acetyltrans 99.8 3.7E-17 8.1E-22 158.3 36.8 346 83-437 8-440 (700)
71 TIGR02521 type_IV_pilW type IV 99.8 2.4E-18 5.1E-23 160.6 28.4 206 45-255 28-233 (234)
72 PLN03077 Protein ECB2; Provisi 99.8 4.3E-17 9.4E-22 180.2 42.8 360 46-431 321-720 (857)
73 KOG0550 Molecular chaperone (D 99.8 3.6E-19 7.8E-24 162.9 20.0 262 157-444 49-329 (486)
74 KOG1915 Cell cycle control pro 99.8 1.3E-15 2.8E-20 142.0 43.1 369 47-432 72-501 (677)
75 COG3063 PilF Tfp pilus assembl 99.8 3.9E-18 8.4E-23 144.7 24.3 207 191-438 35-243 (250)
76 COG2956 Predicted N-acetylgluc 99.8 5.3E-17 1.2E-21 144.2 30.9 258 170-436 48-316 (389)
77 COG2956 Predicted N-acetylgluc 99.8 1.4E-16 2.9E-21 141.6 33.2 234 195-436 39-283 (389)
78 TIGR02521 type_IV_pilW type IV 99.8 1.2E-17 2.5E-22 156.0 28.0 203 190-433 30-234 (234)
79 KOG1840 Kinesin light chain [C 99.8 1.3E-17 2.7E-22 164.6 29.1 245 187-431 195-479 (508)
80 KOG1840 Kinesin light chain [C 99.8 2.2E-17 4.7E-22 163.0 30.1 240 158-397 200-479 (508)
81 PLN02789 farnesyltranstransfer 99.8 1.4E-17 3E-22 157.7 26.2 210 201-415 47-268 (320)
82 KOG1915 Cell cycle control pro 99.8 2.6E-14 5.6E-19 133.5 44.2 385 46-441 105-545 (677)
83 PLN02789 farnesyltranstransfer 99.8 8E-17 1.7E-21 152.6 27.6 210 130-346 51-267 (320)
84 KOG3785 Uncharacterized conser 99.8 1.4E-15 3.1E-20 136.7 31.8 374 49-434 58-493 (557)
85 KOG3785 Uncharacterized conser 99.8 2.8E-15 6.1E-20 134.8 33.4 386 56-460 30-450 (557)
86 cd05804 StaR_like StaR_like; a 99.8 1.7E-15 3.7E-20 150.8 35.4 211 78-295 2-215 (355)
87 cd05804 StaR_like StaR_like; a 99.8 3.5E-15 7.5E-20 148.5 34.8 309 112-432 2-337 (355)
88 TIGR03302 OM_YfiO outer membra 99.7 6.7E-16 1.5E-20 143.5 23.5 202 31-256 16-234 (235)
89 PRK15179 Vi polysaccharide bio 99.7 2.3E-14 5.1E-19 149.2 35.7 160 284-443 70-229 (694)
90 PF12569 NARP1: NMDA receptor- 99.7 1.4E-13 3E-18 138.1 37.2 249 48-296 4-335 (517)
91 COG3071 HemY Uncharacterized e 99.7 5E-13 1.1E-17 123.1 36.3 299 122-431 90-390 (400)
92 KOG2376 Signal recognition par 99.7 2.1E-13 4.6E-18 131.2 35.0 336 84-431 14-446 (652)
93 KOG1130 Predicted G-alpha GTPa 99.7 2.6E-15 5.7E-20 137.6 18.5 295 122-420 23-373 (639)
94 COG3071 HemY Uncharacterized e 99.7 2.2E-12 4.7E-17 119.0 36.2 298 46-361 82-388 (400)
95 KOG4340 Uncharacterized conser 99.7 2.5E-13 5.3E-18 119.6 28.5 364 56-437 18-449 (459)
96 PRK14720 transcript cleavage f 99.7 4.5E-14 9.8E-19 147.7 28.2 290 76-439 25-314 (906)
97 PRK15359 type III secretion sy 99.7 1.8E-15 3.9E-20 127.0 14.5 122 321-445 14-135 (144)
98 TIGR03302 OM_YfiO outer membra 99.7 1.4E-14 3.1E-19 134.6 22.1 181 78-279 29-223 (235)
99 PRK04841 transcriptional regul 99.7 1.1E-12 2.3E-17 147.5 40.6 385 51-436 344-765 (903)
100 PRK15359 type III secretion sy 99.7 4.5E-15 9.8E-20 124.6 15.3 127 286-415 13-139 (144)
101 PF12569 NARP1: NMDA receptor- 99.6 1.1E-12 2.4E-17 131.7 33.3 312 81-397 3-334 (517)
102 KOG1130 Predicted G-alpha GTPa 99.6 6.9E-15 1.5E-19 134.9 15.1 270 161-431 21-344 (639)
103 PRK10370 formate-dependent nit 99.6 4.6E-14 1E-18 125.1 18.5 125 313-437 52-179 (198)
104 KOG3060 Uncharacterized conser 99.6 3.7E-13 8E-18 116.1 21.8 174 276-449 62-238 (289)
105 PRK04841 transcriptional regul 99.6 8.8E-12 1.9E-16 140.1 38.6 348 49-400 375-763 (903)
106 PRK14720 transcript cleavage f 99.6 3E-13 6.5E-18 141.6 24.4 219 186-443 26-264 (906)
107 KOG2047 mRNA splicing factor [ 99.6 4.1E-11 8.9E-16 116.6 36.6 379 48-433 102-581 (835)
108 PRK10370 formate-dependent nit 99.6 2.8E-13 6E-18 120.1 20.4 125 279-403 52-179 (198)
109 KOG2047 mRNA splicing factor [ 99.6 1.7E-10 3.7E-15 112.4 39.1 372 53-432 143-616 (835)
110 KOG3060 Uncharacterized conser 99.6 1.8E-11 4E-16 105.8 27.8 185 187-378 48-235 (289)
111 COG5010 TadD Flp pilus assembl 99.5 1.3E-12 2.9E-17 114.1 20.7 177 244-428 52-228 (257)
112 COG5010 TadD Flp pilus assembl 99.5 1.4E-12 2.9E-17 114.0 20.6 177 66-250 51-227 (257)
113 KOG1128 Uncharacterized conser 99.5 7.8E-13 1.7E-17 130.6 20.3 226 188-435 395-620 (777)
114 TIGR02552 LcrH_SycD type III s 99.5 3.1E-13 6.6E-18 113.6 15.1 119 321-439 4-122 (135)
115 KOG0553 TPR repeat-containing 99.5 2.3E-13 5.1E-18 121.0 13.5 117 334-450 81-197 (304)
116 KOG1128 Uncharacterized conser 99.5 1.8E-12 3.9E-17 128.1 19.4 217 160-398 401-617 (777)
117 PRK15179 Vi polysaccharide bio 99.5 8.9E-12 1.9E-16 130.1 23.9 146 107-259 77-222 (694)
118 TIGR02552 LcrH_SycD type III s 99.5 1.9E-12 4E-17 108.8 15.6 119 287-405 4-122 (135)
119 PRK15363 pathogenicity island 99.5 1.6E-12 3.4E-17 106.2 14.1 105 328-432 28-133 (157)
120 KOG0553 TPR repeat-containing 99.5 9.2E-13 2E-17 117.3 13.6 108 46-153 79-186 (304)
121 PF04733 Coatomer_E: Coatomer 99.5 2E-12 4.2E-17 121.4 15.5 259 166-438 10-272 (290)
122 PF04733 Coatomer_E: Coatomer 99.4 2.4E-12 5.1E-17 120.8 15.9 168 191-368 102-270 (290)
123 PRK15363 pathogenicity island 99.4 1E-11 2.2E-16 101.5 15.4 107 45-151 32-138 (157)
124 PRK10866 outer membrane biogen 99.4 1.8E-10 4E-15 105.5 23.9 183 44-250 28-237 (243)
125 KOG4340 Uncharacterized conser 99.4 3.6E-10 7.7E-15 100.0 22.9 279 127-425 21-333 (459)
126 COG4783 Putative Zn-dependent 99.3 7.8E-10 1.7E-14 105.3 23.5 156 78-257 302-457 (484)
127 KOG3617 WD40 and TPR repeat-co 99.3 7.1E-09 1.5E-13 104.0 30.5 327 58-428 738-1171(1416)
128 PLN03088 SGT1, suppressor of 99.3 7.4E-11 1.6E-15 115.2 16.3 109 49-157 3-111 (356)
129 PF13525 YfiO: Outer membrane 99.3 5.1E-10 1.1E-14 100.3 20.4 175 46-244 3-197 (203)
130 COG4783 Putative Zn-dependent 99.3 3.9E-10 8.5E-15 107.3 20.2 156 297-452 303-458 (484)
131 PLN03088 SGT1, suppressor of 99.3 1.3E-10 2.9E-15 113.5 16.2 113 303-415 5-117 (356)
132 PRK10866 outer membrane biogen 99.3 2.2E-09 4.7E-14 98.5 22.8 175 80-275 30-228 (243)
133 KOG1941 Acetylcholine receptor 99.2 6.1E-09 1.3E-13 94.9 23.3 280 123-431 50-360 (518)
134 PF13525 YfiO: Outer membrane 99.2 2.6E-09 5.7E-14 95.7 20.4 175 81-276 4-195 (203)
135 TIGR02795 tol_pal_ybgF tol-pal 99.2 6E-10 1.3E-14 91.2 13.8 105 335-439 3-113 (119)
136 KOG2053 Mitochondrial inherita 99.2 2E-06 4.4E-11 88.2 41.0 200 51-258 12-259 (932)
137 PF14938 SNAP: Soluble NSF att 99.2 2E-09 4.4E-14 102.1 19.0 196 231-456 41-252 (282)
138 PF14938 SNAP: Soluble NSF att 99.2 1.1E-09 2.4E-14 103.9 17.2 181 63-259 30-230 (282)
139 COG3898 Uncharacterized membra 99.2 3.3E-07 7.1E-12 84.8 31.8 297 122-431 90-392 (531)
140 COG4235 Cytochrome c biogenesi 99.2 1.2E-09 2.5E-14 98.7 15.7 123 316-438 138-263 (287)
141 KOG1070 rRNA processing protei 99.2 2.5E-08 5.5E-13 105.8 27.4 257 208-468 1441-1700(1710)
142 TIGR02795 tol_pal_ybgF tol-pal 99.2 9.6E-10 2.1E-14 90.0 14.0 105 48-152 2-112 (119)
143 KOG1941 Acetylcholine receptor 99.2 8.8E-09 1.9E-13 93.9 20.7 306 119-463 9-356 (518)
144 CHL00033 ycf3 photosystem I as 99.1 1.7E-09 3.6E-14 94.3 15.6 123 59-181 10-137 (168)
145 COG4785 NlpI Lipoprotein NlpI, 99.1 3.8E-09 8.3E-14 89.2 16.4 104 157-260 65-168 (297)
146 PF13414 TPR_11: TPR repeat; P 99.1 2.7E-10 6E-15 82.4 8.5 67 367-433 2-69 (69)
147 COG4235 Cytochrome c biogenesi 99.1 3.1E-09 6.8E-14 95.9 16.0 123 280-402 136-261 (287)
148 cd00189 TPR Tetratricopeptide 99.1 1.3E-09 2.8E-14 85.3 11.9 99 336-434 2-100 (100)
149 CHL00033 ycf3 photosystem I as 99.1 2.8E-09 6.1E-14 92.8 14.9 105 334-438 35-156 (168)
150 COG4785 NlpI Lipoprotein NlpI, 99.1 2.6E-08 5.7E-13 84.3 19.3 203 81-295 64-266 (297)
151 PF09976 TPR_21: Tetratricopep 99.1 8.8E-09 1.9E-13 87.0 17.0 117 312-429 23-145 (145)
152 PRK02603 photosystem I assembl 99.1 4.1E-09 8.8E-14 92.1 15.1 119 298-436 33-154 (172)
153 PRK10803 tol-pal system protei 99.1 8.1E-09 1.8E-13 95.2 17.4 107 46-152 140-253 (263)
154 PF13414 TPR_11: TPR repeat; P 99.1 7.3E-10 1.6E-14 80.2 7.9 67 333-399 2-69 (69)
155 KOG2300 Uncharacterized conser 99.1 9.7E-06 2.1E-10 77.4 36.8 385 48-438 7-521 (629)
156 cd00189 TPR Tetratricopeptide 99.0 3.1E-09 6.7E-14 83.1 11.8 99 50-148 2-100 (100)
157 PF12895 Apc3: Anaphase-promot 99.0 6.1E-10 1.3E-14 84.1 7.1 82 60-142 1-84 (84)
158 PRK10153 DNA-binding transcrip 99.0 1.3E-08 2.8E-13 103.6 18.9 143 295-438 332-489 (517)
159 COG0457 NrfG FOG: TPR repeat [ 99.0 8.5E-07 1.8E-11 83.1 30.6 224 204-434 36-268 (291)
160 KOG1914 mRNA cleavage and poly 99.0 1.7E-05 3.6E-10 77.0 38.1 419 43-468 15-502 (656)
161 KOG4648 Uncharacterized conser 99.0 1.7E-10 3.8E-15 103.9 4.6 107 51-157 100-206 (536)
162 PRK02603 photosystem I assembl 99.0 1E-08 2.3E-13 89.5 15.8 72 81-152 34-108 (172)
163 PF13432 TPR_16: Tetratricopep 99.0 1E-09 2.3E-14 78.2 7.8 64 373-436 2-65 (65)
164 COG0457 NrfG FOG: TPR repeat [ 99.0 2.2E-06 4.7E-11 80.3 33.1 203 160-400 62-268 (291)
165 PF13432 TPR_16: Tetratricopep 99.0 1.1E-09 2.3E-14 78.1 7.6 65 52-116 1-65 (65)
166 PF09976 TPR_21: Tetratricopep 99.0 1.7E-08 3.7E-13 85.3 16.2 130 47-184 10-145 (145)
167 KOG3617 WD40 and TPR repeat-co 99.0 8.5E-07 1.8E-11 89.6 30.0 186 49-253 758-995 (1416)
168 KOG3081 Vesicle coat complex C 99.0 3.3E-07 7.3E-12 80.5 24.0 168 191-368 108-276 (299)
169 PRK15331 chaperone protein Sic 99.0 9.5E-09 2E-13 84.5 13.7 105 46-151 35-139 (165)
170 KOG1070 rRNA processing protei 99.0 1.5E-07 3.3E-12 100.2 25.9 233 173-413 1440-1681(1710)
171 KOG0543 FKBP-type peptidyl-pro 99.0 9.9E-09 2.1E-13 96.1 15.5 73 370-442 259-331 (397)
172 PF12895 Apc3: Anaphase-promot 99.0 8.8E-10 1.9E-14 83.2 7.1 81 347-428 2-84 (84)
173 KOG3081 Vesicle coat complex C 99.0 3.2E-07 6.9E-12 80.7 23.6 257 165-437 16-277 (299)
174 PRK15331 chaperone protein Sic 99.0 5.3E-09 1.2E-13 86.0 11.6 106 330-436 33-138 (165)
175 PRK11906 transcriptional regul 99.0 3.7E-08 8.1E-13 94.7 19.0 160 50-216 257-432 (458)
176 KOG0543 FKBP-type peptidyl-pro 99.0 1.2E-08 2.7E-13 95.5 14.9 131 49-186 209-355 (397)
177 COG1729 Uncharacterized protei 99.0 4.5E-08 9.7E-13 87.5 17.4 107 47-153 140-252 (262)
178 COG4105 ComL DNA uptake lipopr 99.0 3.7E-07 8E-12 80.8 22.7 191 44-258 30-237 (254)
179 PRK11906 transcriptional regul 99.0 3.8E-08 8.3E-13 94.7 17.8 147 281-427 273-432 (458)
180 PRK10153 DNA-binding transcrip 99.0 2.9E-08 6.3E-13 101.1 18.1 144 75-226 330-488 (517)
181 PRK10803 tol-pal system protei 99.0 2.2E-08 4.8E-13 92.3 15.0 106 334-439 142-254 (263)
182 KOG2300 Uncharacterized conser 98.9 5.6E-05 1.2E-09 72.4 36.2 348 82-432 7-475 (629)
183 KOG2471 TPR repeat-containing 98.9 3.5E-06 7.5E-11 80.4 27.9 265 168-433 217-650 (696)
184 KOG2471 TPR repeat-containing 98.9 6.8E-07 1.5E-11 85.1 23.1 379 45-429 203-682 (696)
185 COG3898 Uncharacterized membra 98.9 1.4E-05 2.9E-10 74.4 30.4 294 50-396 86-391 (531)
186 KOG4648 Uncharacterized conser 98.9 1.2E-09 2.7E-14 98.6 3.4 241 160-441 100-340 (536)
187 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 9.4E-08 2E-12 92.8 16.5 121 305-428 174-294 (395)
188 PF13512 TPR_18: Tetratricopep 98.9 8.9E-08 1.9E-12 77.1 13.4 108 45-152 7-135 (142)
189 KOG4234 TPR repeat-containing 98.8 3.2E-08 6.9E-13 82.6 10.3 105 337-441 98-207 (271)
190 PF14559 TPR_19: Tetratricopep 98.8 1.2E-08 2.7E-13 73.5 7.1 67 58-124 1-67 (68)
191 COG4105 ComL DNA uptake lipopr 98.8 2.4E-06 5.3E-11 75.8 22.1 173 81-274 33-219 (254)
192 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.2E-07 2.6E-12 92.1 15.3 115 277-394 180-294 (395)
193 KOG4234 TPR repeat-containing 98.8 1E-07 2.2E-12 79.6 12.4 108 49-156 96-208 (271)
194 KOG2053 Mitochondrial inherita 98.8 4.4E-05 9.6E-10 78.7 33.3 287 93-393 20-333 (932)
195 PF12688 TPR_5: Tetratrico pep 98.8 1.9E-07 4.1E-12 74.2 13.3 94 302-395 3-102 (120)
196 PF07079 DUF1347: Protein of u 98.8 0.00017 3.8E-09 68.7 39.3 136 51-186 9-157 (549)
197 PF12688 TPR_5: Tetratrico pep 98.8 2.4E-07 5.3E-12 73.6 13.1 96 335-430 2-103 (120)
198 COG1729 Uncharacterized protei 98.8 2E-07 4.4E-12 83.4 13.4 105 337-441 144-254 (262)
199 PF14559 TPR_19: Tetratricopep 98.7 4.2E-08 9.1E-13 70.6 7.0 56 348-403 5-60 (68)
200 PF13371 TPR_9: Tetratricopept 98.7 1.1E-07 2.3E-12 69.7 8.4 69 55-123 2-70 (73)
201 COG4700 Uncharacterized protei 98.7 3.6E-06 7.8E-11 69.8 17.7 147 282-430 72-221 (251)
202 KOG1914 mRNA cleavage and poly 98.7 0.0005 1.1E-08 67.2 40.7 377 43-435 48-505 (656)
203 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1.2E-07 2.7E-12 91.1 9.9 68 330-397 71-141 (453)
204 PF13371 TPR_9: Tetratricopept 98.7 1.7E-07 3.8E-12 68.5 8.5 63 376-438 3-65 (73)
205 KOG1586 Protein required for f 98.6 1E-05 2.2E-10 69.9 19.9 108 337-444 116-237 (288)
206 KOG2796 Uncharacterized conser 98.6 4.5E-05 9.7E-10 67.2 23.8 226 191-436 69-320 (366)
207 PF13512 TPR_18: Tetratricopep 98.6 1.9E-06 4E-11 69.6 13.8 105 335-439 11-136 (142)
208 KOG4507 Uncharacterized conser 98.6 6.6E-06 1.4E-10 80.3 19.7 104 341-444 614-718 (886)
209 KOG2796 Uncharacterized conser 98.6 0.00012 2.6E-09 64.6 25.0 232 81-367 68-319 (366)
210 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 4E-07 8.6E-12 87.7 10.9 83 29-111 56-141 (453)
211 KOG4555 TPR repeat-containing 98.6 5.6E-06 1.2E-10 64.2 14.3 100 49-148 44-147 (175)
212 COG4700 Uncharacterized protei 98.5 2.9E-05 6.2E-10 64.6 19.3 148 96-252 70-220 (251)
213 KOG1586 Protein required for f 98.5 3E-05 6.4E-10 67.1 19.9 190 96-301 28-230 (288)
214 KOG4555 TPR repeat-containing 98.5 6.9E-06 1.5E-10 63.7 13.9 97 303-399 46-146 (175)
215 PF13424 TPR_12: Tetratricopep 98.5 2.2E-07 4.8E-12 68.9 4.8 64 368-431 5-75 (78)
216 KOG3616 Selective LIM binding 98.4 0.00084 1.8E-08 67.9 29.8 211 194-430 664-910 (1636)
217 PF10300 DUF3808: Protein of u 98.4 0.00055 1.2E-08 69.7 29.5 155 278-432 200-377 (468)
218 KOG4642 Chaperone-dependent E3 98.4 8.9E-07 1.9E-11 76.5 7.9 101 45-145 7-107 (284)
219 PF13424 TPR_12: Tetratricopep 98.4 5.3E-07 1.1E-11 66.9 5.6 74 113-186 2-75 (78)
220 KOG1585 Protein required for f 98.4 6.4E-05 1.4E-09 65.5 18.4 200 228-460 34-249 (308)
221 PF06552 TOM20_plant: Plant sp 98.4 2.8E-06 6E-11 70.8 9.6 101 316-443 7-121 (186)
222 KOG1258 mRNA processing protei 98.4 0.0039 8.4E-08 62.4 33.1 345 63-423 60-421 (577)
223 PF10300 DUF3808: Protein of u 98.4 0.00039 8.4E-09 70.8 26.4 167 230-397 193-376 (468)
224 KOG1258 mRNA processing protei 98.3 0.0045 9.9E-08 61.9 40.0 390 50-456 81-495 (577)
225 PF06552 TOM20_plant: Plant sp 98.3 8E-06 1.7E-10 68.1 11.0 96 132-227 7-116 (186)
226 KOG3616 Selective LIM binding 98.3 0.00078 1.7E-08 68.1 26.6 312 87-435 666-1028(1636)
227 KOG1585 Protein required for f 98.3 0.00028 6E-09 61.7 19.9 27 160-186 34-60 (308)
228 KOG4507 Uncharacterized conser 98.3 9.4E-05 2E-09 72.5 19.1 107 307-413 614-721 (886)
229 PF08631 SPO22: Meiosis protei 98.3 0.0014 3E-08 62.1 26.2 131 126-256 3-152 (278)
230 KOG0985 Vesicle coat protein c 98.2 0.0069 1.5E-07 63.9 30.6 295 46-380 982-1325(1666)
231 PF05843 Suf: Suppressor of fo 98.2 4.5E-05 9.7E-10 72.2 14.4 136 302-437 3-142 (280)
232 PF02259 FAT: FAT domain; Int 98.2 0.0026 5.6E-08 63.2 27.9 296 54-366 4-341 (352)
233 PF04184 ST7: ST7 protein; In 98.2 0.00048 1E-08 67.0 21.1 141 52-199 172-338 (539)
234 PF10345 Cohesin_load: Cohesin 98.2 0.016 3.4E-07 61.8 35.6 316 65-383 38-464 (608)
235 KOG2610 Uncharacterized conser 98.2 0.00023 5.1E-09 65.1 17.7 164 120-293 107-274 (491)
236 PF10345 Cohesin_load: Cohesin 98.1 0.018 4E-07 61.4 40.8 409 46-459 57-598 (608)
237 KOG1550 Extracellular protein 98.1 0.0038 8.3E-08 65.3 28.9 177 63-254 227-426 (552)
238 PF13281 DUF4071: Domain of un 98.1 0.0031 6.7E-08 60.7 25.6 125 190-315 140-274 (374)
239 KOG4642 Chaperone-dependent E3 98.1 6.7E-06 1.5E-10 71.2 6.8 89 342-430 18-106 (284)
240 KOG0545 Aryl-hydrocarbon recep 98.1 5.4E-05 1.2E-09 65.9 12.1 75 368-442 230-304 (329)
241 KOG2610 Uncharacterized conser 98.1 0.00028 6E-09 64.6 17.1 149 279-427 116-272 (491)
242 KOG0545 Aryl-hydrocarbon recep 98.1 5.6E-05 1.2E-09 65.8 12.0 108 45-152 175-300 (329)
243 PF02259 FAT: FAT domain; Int 98.1 0.004 8.7E-08 61.8 27.5 138 297-434 143-341 (352)
244 PF13428 TPR_14: Tetratricopep 98.1 1E-05 2.3E-10 51.8 5.4 40 370-409 3-42 (44)
245 PF05843 Suf: Suppressor of fo 98.1 0.00017 3.6E-09 68.3 15.5 137 50-190 3-140 (280)
246 PF04184 ST7: ST7 protein; In 98.0 0.00074 1.6E-08 65.8 19.4 238 86-344 172-429 (539)
247 KOG0376 Serine-threonine phosp 98.0 9.8E-06 2.1E-10 78.0 6.8 109 48-156 4-112 (476)
248 KOG1550 Extracellular protein 98.0 0.0064 1.4E-07 63.6 28.1 229 193-435 290-542 (552)
249 KOG0985 Vesicle coat protein c 98.0 0.029 6.2E-07 59.5 31.3 234 61-320 1088-1374(1666)
250 KOG0551 Hsp90 co-chaperone CNS 98.0 7.1E-05 1.5E-09 68.3 11.1 102 47-148 80-185 (390)
251 COG2909 MalT ATP-dependent tra 98.0 0.033 7.2E-07 58.6 31.3 298 116-427 347-684 (894)
252 PF13428 TPR_14: Tetratricopep 98.0 1.8E-05 4E-10 50.6 5.0 39 51-89 4-42 (44)
253 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.022 4.8E-07 54.8 32.6 150 70-221 30-191 (660)
254 KOG0376 Serine-threonine phosp 97.9 1.1E-05 2.5E-10 77.6 5.1 128 304-436 8-135 (476)
255 PF13431 TPR_17: Tetratricopep 97.9 1.2E-05 2.6E-10 47.7 3.3 32 391-422 2-33 (34)
256 PF00515 TPR_1: Tetratricopept 97.9 2.5E-05 5.3E-10 46.8 4.3 32 403-434 2-33 (34)
257 COG2909 MalT ATP-dependent tra 97.9 0.015 3.2E-07 61.0 26.6 246 46-292 413-685 (894)
258 PF13281 DUF4071: Domain of un 97.9 0.0071 1.5E-07 58.3 22.8 177 81-258 140-338 (374)
259 KOG0530 Protein farnesyltransf 97.9 0.0069 1.5E-07 53.9 20.4 174 131-312 58-233 (318)
260 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.03 6.5E-07 53.9 34.1 78 42-120 36-113 (660)
261 PF13431 TPR_17: Tetratricopep 97.9 1.5E-05 3.2E-10 47.3 2.9 32 357-388 2-33 (34)
262 COG3118 Thioredoxin domain-con 97.9 0.0039 8.5E-08 56.8 19.5 160 83-249 135-296 (304)
263 PF07719 TPR_2: Tetratricopept 97.9 4E-05 8.6E-10 45.9 4.9 33 403-435 2-34 (34)
264 COG3118 Thioredoxin domain-con 97.9 0.0011 2.4E-08 60.2 15.9 156 47-210 133-291 (304)
265 PF08631 SPO22: Meiosis protei 97.9 0.028 6.1E-07 53.3 27.1 159 94-253 5-185 (278)
266 KOG0890 Protein kinase of the 97.8 0.02 4.3E-07 66.4 28.9 87 241-329 1645-1731(2382)
267 KOG0890 Protein kinase of the 97.8 0.043 9.4E-07 63.8 31.1 107 332-440 1668-1793(2382)
268 KOG0530 Protein farnesyltransf 97.7 0.023 5.1E-07 50.6 21.7 199 47-252 41-251 (318)
269 PRK13184 pknD serine/threonine 97.7 0.075 1.6E-06 58.2 30.4 335 52-395 479-867 (932)
270 KOG1308 Hsp70-interacting prot 97.7 5.2E-05 1.1E-09 69.6 5.8 98 51-148 117-214 (377)
271 KOG2396 HAT (Half-A-TPR) repea 97.7 0.058 1.3E-06 52.9 37.0 97 334-430 460-558 (568)
272 COG2976 Uncharacterized protei 97.7 0.0042 9.1E-08 52.8 15.5 118 318-436 70-193 (207)
273 PF00515 TPR_1: Tetratricopept 97.6 0.00013 2.9E-09 43.6 4.7 32 369-400 2-33 (34)
274 KOG0551 Hsp90 co-chaperone CNS 97.6 0.00031 6.7E-09 64.3 8.8 99 337-435 84-186 (390)
275 PF07079 DUF1347: Protein of u 97.6 0.084 1.8E-06 51.2 35.4 373 49-428 46-521 (549)
276 PF07719 TPR_2: Tetratricopept 97.6 0.00024 5.1E-09 42.5 5.1 32 369-400 2-33 (34)
277 PF03704 BTAD: Bacterial trans 97.5 0.0028 6E-08 53.6 13.4 96 49-144 7-124 (146)
278 PF03704 BTAD: Bacterial trans 97.5 0.0036 7.8E-08 52.9 13.9 62 369-430 63-124 (146)
279 KOG1308 Hsp70-interacting prot 97.5 0.00011 2.5E-09 67.5 4.5 90 310-399 124-213 (377)
280 PRK15180 Vi polysaccharide bio 97.5 0.12 2.7E-06 50.3 27.7 135 47-188 288-422 (831)
281 PF13181 TPR_8: Tetratricopept 97.4 0.00023 5E-09 42.5 4.0 32 403-434 2-33 (34)
282 COG0790 FOG: TPR repeat, SEL1 97.4 0.066 1.4E-06 51.4 23.1 129 281-416 92-236 (292)
283 PF08424 NRDE-2: NRDE-2, neces 97.4 0.019 4.2E-07 55.5 19.2 135 173-330 47-184 (321)
284 PF08424 NRDE-2: NRDE-2, neces 97.3 0.021 4.6E-07 55.2 18.3 114 69-186 6-131 (321)
285 KOG0128 RNA-binding protein SA 97.3 0.33 7.2E-06 50.9 33.8 369 62-432 93-527 (881)
286 COG2976 Uncharacterized protei 97.2 0.024 5.2E-07 48.4 14.8 150 54-224 37-192 (207)
287 COG0790 FOG: TPR repeat, SEL1 97.2 0.22 4.7E-06 47.9 25.1 166 168-341 52-230 (292)
288 KOG1463 26S proteasome regulat 97.1 0.22 4.8E-06 46.4 21.6 206 51-257 7-241 (411)
289 PF04910 Tcf25: Transcriptiona 97.1 0.031 6.7E-07 54.7 16.5 144 292-435 32-226 (360)
290 KOG3783 Uncharacterized conser 97.1 0.29 6.3E-06 48.9 22.5 298 124-435 198-524 (546)
291 PF13176 TPR_7: Tetratricopept 97.0 0.00064 1.4E-08 41.1 2.6 27 405-431 2-28 (36)
292 PF13174 TPR_6: Tetratricopept 97.0 0.0013 2.8E-08 38.8 3.9 31 404-434 2-32 (33)
293 PF04781 DUF627: Protein of un 97.0 0.0076 1.6E-07 46.3 8.7 92 54-145 2-107 (111)
294 KOG3824 Huntingtin interacting 97.0 0.0027 5.8E-08 57.6 7.3 77 48-124 116-192 (472)
295 PF13181 TPR_8: Tetratricopept 97.0 0.0017 3.6E-08 38.7 4.2 30 370-399 3-32 (34)
296 KOG3783 Uncharacterized conser 96.9 0.24 5.2E-06 49.4 20.8 95 99-198 250-344 (546)
297 PF04910 Tcf25: Transcriptiona 96.9 0.052 1.1E-06 53.2 16.5 74 75-148 33-135 (360)
298 PF09613 HrpB1_HrpK: Bacterial 96.9 0.082 1.8E-06 44.1 14.9 100 47-147 9-108 (160)
299 PRK15180 Vi polysaccharide bio 96.9 0.0055 1.2E-07 59.2 8.8 142 312-453 301-442 (831)
300 KOG2396 HAT (Half-A-TPR) repea 96.8 0.58 1.3E-05 46.3 32.3 347 46-397 103-559 (568)
301 KOG3824 Huntingtin interacting 96.8 0.0045 9.8E-08 56.2 7.5 64 379-442 127-190 (472)
302 KOG1464 COP9 signalosome, subu 96.8 0.1 2.2E-06 46.9 15.3 196 60-258 39-264 (440)
303 KOG2041 WD40 repeat protein [G 96.8 0.82 1.8E-05 47.0 29.9 175 55-250 670-877 (1189)
304 PF13174 TPR_6: Tetratricopept 96.7 0.0032 7E-08 37.1 4.0 29 85-113 3-31 (33)
305 PRK11619 lytic murein transgly 96.6 1.3 2.8E-05 47.4 34.8 125 48-188 33-160 (644)
306 KOG1464 COP9 signalosome, subu 96.6 0.24 5.1E-06 44.6 16.1 194 95-295 40-260 (440)
307 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.0067 1.5E-07 40.0 5.0 37 404-440 3-39 (53)
308 PF14561 TPR_20: Tetratricopep 96.5 0.038 8.2E-07 41.6 9.5 70 67-136 7-78 (90)
309 KOG1463 26S proteasome regulat 96.5 0.74 1.6E-05 43.1 23.3 100 196-295 133-238 (411)
310 PRK10941 hypothetical protein; 96.5 0.021 4.6E-07 52.9 9.6 70 370-439 183-252 (269)
311 KOG1538 Uncharacterized conser 96.4 0.79 1.7E-05 46.7 20.4 28 47-74 584-611 (1081)
312 KOG2041 WD40 repeat protein [G 96.4 0.74 1.6E-05 47.3 20.1 253 98-394 679-936 (1189)
313 COG3914 Spy Predicted O-linked 96.4 0.29 6.2E-06 49.4 17.1 133 313-445 44-185 (620)
314 TIGR02561 HrpB1_HrpK type III 96.4 0.23 4.9E-06 40.7 13.6 86 48-133 10-95 (153)
315 PF09613 HrpB1_HrpK: Bacterial 96.4 0.095 2.1E-06 43.7 11.8 97 336-433 12-108 (160)
316 PF12968 DUF3856: Domain of Un 96.4 0.17 3.7E-06 39.2 12.1 87 345-431 20-129 (144)
317 PF14561 TPR_20: Tetratricopep 96.3 0.042 9.2E-07 41.3 8.9 48 388-435 8-55 (90)
318 PF14853 Fis1_TPR_C: Fis1 C-te 96.3 0.019 4E-07 37.9 6.1 34 85-118 4-37 (53)
319 PF13176 TPR_7: Tetratricopept 96.3 0.0086 1.9E-07 36.1 4.2 25 371-395 2-26 (36)
320 PRK10941 hypothetical protein; 96.3 0.079 1.7E-06 49.2 12.0 68 194-261 184-251 (269)
321 PF09986 DUF2225: Uncharacteri 96.1 0.079 1.7E-06 47.5 10.7 92 129-220 90-194 (214)
322 PF04781 DUF627: Protein of un 96.1 0.089 1.9E-06 40.6 9.3 103 306-431 2-107 (111)
323 smart00028 TPR Tetratricopepti 96.0 0.012 2.5E-07 34.2 3.7 31 404-434 3-33 (34)
324 COG4976 Predicted methyltransf 96.0 0.014 2.9E-07 51.0 5.2 66 376-441 3-68 (287)
325 PRK13184 pknD serine/threonine 95.9 3.7 8E-05 45.6 26.9 134 123-257 482-623 (932)
326 COG5159 RPN6 26S proteasome re 95.9 1.3 2.9E-05 40.4 25.9 216 52-296 7-236 (421)
327 KOG1538 Uncharacterized conser 95.8 2.6 5.6E-05 43.2 20.6 49 56-109 564-612 (1081)
328 PF12968 DUF3856: Domain of Un 95.7 0.5 1.1E-05 36.8 11.9 95 51-145 12-129 (144)
329 COG4649 Uncharacterized protei 95.7 1.1 2.4E-05 37.7 16.0 131 310-441 68-205 (221)
330 KOG3364 Membrane protein invol 95.7 0.14 3E-06 40.8 9.1 74 367-440 31-109 (149)
331 PF10602 RPN7: 26S proteasome 95.6 0.25 5.5E-06 42.9 11.6 103 83-186 37-142 (177)
332 KOG1839 Uncharacterized protei 95.6 0.12 2.6E-06 57.0 11.4 162 270-431 936-1128(1236)
333 KOG4814 Uncharacterized conser 95.5 1.1 2.3E-05 45.8 16.9 100 155-254 352-457 (872)
334 PF09986 DUF2225: Uncharacteri 95.4 0.16 3.4E-06 45.6 10.2 30 334-363 165-194 (214)
335 COG4649 Uncharacterized protei 95.4 1.4 3E-05 37.1 16.8 145 49-200 59-209 (221)
336 KOG1310 WD40 repeat protein [G 95.4 0.14 3E-06 50.6 10.1 105 46-150 372-479 (758)
337 TIGR02561 HrpB1_HrpK type III 95.4 0.34 7.4E-06 39.7 10.7 72 347-418 23-94 (153)
338 KOG1839 Uncharacterized protei 95.3 0.25 5.5E-06 54.7 12.8 137 46-186 930-1086(1236)
339 KOG3364 Membrane protein invol 95.3 0.5 1.1E-05 37.8 11.0 74 334-407 32-110 (149)
340 COG4976 Predicted methyltransf 95.3 0.036 7.7E-07 48.5 5.1 60 92-151 5-64 (287)
341 smart00028 TPR Tetratricopepti 95.2 0.038 8.2E-07 31.8 4.0 29 85-113 4-32 (34)
342 COG1747 Uncharacterized N-term 95.1 4 8.7E-05 40.8 22.0 81 172-255 81-161 (711)
343 PF10602 RPN7: 26S proteasome 94.9 0.43 9.2E-06 41.5 10.9 64 192-255 37-103 (177)
344 KOG1310 WD40 repeat protein [G 94.9 0.085 1.8E-06 52.0 7.1 84 350-433 390-476 (758)
345 KOG2422 Uncharacterized conser 94.8 2.6 5.6E-05 42.7 16.8 104 60-163 250-390 (665)
346 KOG4814 Uncharacterized conser 94.7 4.6 0.0001 41.5 18.4 101 119-220 357-457 (872)
347 PF10579 Rapsyn_N: Rapsyn N-te 94.5 0.4 8.6E-06 34.3 7.8 64 47-110 5-71 (80)
348 PF13374 TPR_10: Tetratricopep 94.3 0.1 2.2E-06 32.5 4.4 29 403-431 3-31 (42)
349 COG5191 Uncharacterized conser 94.2 0.09 1.9E-06 48.2 5.2 78 364-441 103-181 (435)
350 PF04053 Coatomer_WDAD: Coatom 94.1 1.9 4.1E-05 43.7 15.0 165 49-251 262-428 (443)
351 COG5191 Uncharacterized conser 93.8 0.19 4E-06 46.3 6.4 79 45-123 104-183 (435)
352 PF13374 TPR_10: Tetratricopep 93.8 0.17 3.6E-06 31.5 4.6 29 369-397 3-31 (42)
353 KOG2422 Uncharacterized conser 93.8 4.5 9.8E-05 41.1 16.2 103 170-272 251-390 (665)
354 PRK11619 lytic murein transgly 93.6 12 0.00027 40.1 36.8 77 70-150 84-163 (644)
355 KOG0529 Protein geranylgeranyl 93.3 3.6 7.8E-05 40.0 14.3 123 319-441 94-234 (421)
356 PF04053 Coatomer_WDAD: Coatom 93.3 8.5 0.00019 39.1 17.9 28 299-326 346-373 (443)
357 KOG0529 Protein geranylgeranyl 93.1 9.3 0.0002 37.3 18.0 99 349-447 90-194 (421)
358 PF04190 DUF410: Protein of un 93.1 7.6 0.00016 36.3 17.5 34 221-254 136-170 (260)
359 PF15015 NYD-SP12_N: Spermatog 92.7 0.63 1.4E-05 44.9 8.4 92 51-142 179-288 (569)
360 COG3629 DnrI DNA-binding trans 92.5 3.2 6.9E-05 38.7 12.6 64 82-145 153-216 (280)
361 PF07720 TPR_3: Tetratricopept 92.5 0.48 1E-05 28.3 4.8 31 404-434 3-35 (36)
362 COG2912 Uncharacterized conser 92.4 1.1 2.4E-05 41.0 9.3 69 194-262 184-252 (269)
363 PF12862 Apc5: Anaphase-promot 92.4 0.81 1.8E-05 34.9 7.4 61 126-186 8-70 (94)
364 PF15015 NYD-SP12_N: Spermatog 92.4 1.7 3.6E-05 42.2 10.6 96 122-217 182-288 (569)
365 COG5159 RPN6 26S proteasome re 92.4 9 0.0002 35.3 20.9 134 120-253 7-153 (421)
366 KOG2581 26S proteasome regulat 92.1 12 0.00027 36.4 17.5 201 57-259 39-281 (493)
367 PF09670 Cas_Cas02710: CRISPR- 92.1 5 0.00011 39.9 14.3 63 49-111 132-198 (379)
368 KOG2063 Vacuolar assembly/sort 92.1 21 0.00045 39.3 19.5 112 160-271 507-638 (877)
369 KOG3807 Predicted membrane pro 91.9 11 0.00025 35.4 19.5 146 86-250 188-336 (556)
370 PF11207 DUF2989: Protein of u 91.8 5.3 0.00012 35.0 12.2 74 171-245 120-198 (203)
371 PF07721 TPR_4: Tetratricopept 91.6 0.27 5.9E-06 26.8 2.8 23 404-426 3-25 (26)
372 KOG3807 Predicted membrane pro 91.5 12 0.00027 35.1 18.2 59 51-111 187-245 (556)
373 COG3629 DnrI DNA-binding trans 91.5 1.1 2.3E-05 41.7 8.3 65 47-111 152-216 (280)
374 KOG2581 26S proteasome regulat 91.3 15 0.00033 35.8 19.4 141 47-190 123-280 (493)
375 PF10579 Rapsyn_N: Rapsyn N-te 91.3 1.9 4.1E-05 31.0 7.4 61 85-145 9-72 (80)
376 COG1747 Uncharacterized N-term 91.3 18 0.00039 36.5 25.2 202 113-331 63-290 (711)
377 PF12862 Apc5: Anaphase-promot 91.1 2.1 4.6E-05 32.6 8.5 28 370-397 43-70 (94)
378 COG2912 Uncharacterized conser 90.9 2 4.4E-05 39.4 9.2 61 343-403 190-250 (269)
379 PF00244 14-3-3: 14-3-3 protei 90.6 14 0.0003 34.0 16.9 63 49-111 2-66 (236)
380 PF07720 TPR_3: Tetratricopept 90.6 0.95 2E-05 27.1 4.7 21 50-70 3-23 (36)
381 PF07721 TPR_4: Tetratricopept 90.5 0.43 9.3E-06 26.0 3.0 23 370-392 3-25 (26)
382 PF11207 DUF2989: Protein of u 90.3 4.5 9.8E-05 35.4 10.4 55 367-422 140-198 (203)
383 KOG2063 Vacuolar assembly/sort 90.2 17 0.00037 40.0 16.7 59 51-109 310-373 (877)
384 KOG0889 Histone acetyltransfer 89.8 58 0.0012 41.5 21.8 45 368-412 2812-2856(3550)
385 KOG0128 RNA-binding protein SA 89.4 34 0.00075 36.8 36.1 378 48-427 113-559 (881)
386 PF10516 SHNi-TPR: SHNi-TPR; 89.4 0.65 1.4E-05 28.1 3.3 29 403-431 2-30 (38)
387 PF10516 SHNi-TPR: SHNi-TPR; 89.2 0.85 1.8E-05 27.6 3.7 29 369-397 2-30 (38)
388 PF04190 DUF410: Protein of un 89.1 19 0.00042 33.6 18.3 27 298-324 88-114 (260)
389 PF11817 Foie-gras_1: Foie gra 89.0 19 0.00042 33.4 14.6 28 159-186 12-39 (247)
390 PF12739 TRAPPC-Trs85: ER-Golg 88.8 23 0.0005 35.8 16.1 25 409-433 377-401 (414)
391 PF14863 Alkyl_sulf_dimr: Alky 88.8 1.6 3.4E-05 36.0 6.3 52 47-98 69-120 (141)
392 PF12739 TRAPPC-Trs85: ER-Golg 88.6 20 0.00042 36.4 15.4 54 118-172 210-263 (414)
393 PF04097 Nic96: Nup93/Nic96; 88.5 39 0.00084 36.3 22.7 28 46-73 109-136 (613)
394 KOG1920 IkappaB kinase complex 88.0 52 0.0011 37.1 22.6 22 339-360 1004-1025(1265)
395 KOG1920 IkappaB kinase complex 87.8 53 0.0011 37.1 21.6 110 302-429 941-1053(1265)
396 PF00244 14-3-3: 14-3-3 protei 87.8 9.9 0.00021 34.9 11.6 29 195-223 5-33 (236)
397 PF04097 Nic96: Nup93/Nic96; 87.3 46 0.00099 35.8 17.8 158 88-251 264-440 (613)
398 smart00299 CLH Clathrin heavy 87.1 16 0.00034 30.3 12.6 47 202-249 18-64 (140)
399 COG3947 Response regulator con 86.8 3.1 6.6E-05 38.4 7.4 59 371-429 282-340 (361)
400 COG3947 Response regulator con 86.7 3.1 6.6E-05 38.4 7.3 61 84-144 281-341 (361)
401 PF10373 EST1_DNA_bind: Est1 D 86.0 2.6 5.7E-05 40.0 7.3 62 319-380 1-62 (278)
402 PF10373 EST1_DNA_bind: Est1 D 85.8 3.3 7.1E-05 39.3 7.8 62 285-346 1-62 (278)
403 PF11817 Foie-gras_1: Foie gra 85.7 21 0.00045 33.1 12.8 59 302-360 180-244 (247)
404 KOG2114 Vacuolar assembly/sort 85.2 22 0.00047 38.3 13.4 55 199-254 342-397 (933)
405 COG4941 Predicted RNA polymera 85.2 36 0.00077 32.5 15.9 159 280-439 210-402 (415)
406 COG4455 ImpE Protein of avirul 84.3 7.7 0.00017 34.3 8.3 62 55-116 8-69 (273)
407 TIGR03504 FimV_Cterm FimV C-te 83.7 2.6 5.7E-05 26.6 4.0 25 52-76 3-27 (44)
408 KOG0276 Vesicle coat complex C 83.6 19 0.0004 37.1 11.7 133 309-470 646-778 (794)
409 TIGR03504 FimV_Cterm FimV C-te 83.5 3.1 6.6E-05 26.3 4.2 24 406-429 3-26 (44)
410 PF09670 Cas_Cas02710: CRISPR- 83.4 44 0.00096 33.3 14.6 64 157-220 131-198 (379)
411 PF10255 Paf67: RNA polymerase 83.2 14 0.00031 36.7 10.7 29 368-396 164-192 (404)
412 KOG0276 Vesicle coat complex C 82.6 29 0.00063 35.9 12.5 153 57-251 595-747 (794)
413 KOG0546 HSP90 co-chaperone CPR 81.9 2.6 5.6E-05 40.1 4.9 71 370-440 277-347 (372)
414 PF10255 Paf67: RNA polymerase 81.8 51 0.0011 32.9 13.9 61 302-362 124-192 (404)
415 smart00386 HAT HAT (Half-A-TPR 81.7 3.7 8E-05 23.3 4.1 27 63-89 2-28 (33)
416 PF04348 LppC: LppC putative l 81.3 4.3 9.4E-05 42.5 7.0 96 301-396 25-126 (536)
417 KOG2114 Vacuolar assembly/sort 80.5 92 0.002 33.8 26.2 63 48-111 334-397 (933)
418 COG4941 Predicted RNA polymera 79.9 58 0.0012 31.2 16.7 162 98-262 212-402 (415)
419 smart00386 HAT HAT (Half-A-TPR 79.7 5.4 0.00012 22.6 4.3 21 385-405 4-24 (33)
420 PF12854 PPR_1: PPR repeat 79.5 5.8 0.00013 23.3 4.3 25 334-358 7-31 (34)
421 smart00101 14_3_3 14-3-3 homol 77.8 58 0.0013 30.0 16.2 56 195-250 5-64 (244)
422 PF12854 PPR_1: PPR repeat 77.5 7.2 0.00016 22.9 4.3 26 402-427 7-32 (34)
423 KOG0546 HSP90 co-chaperone CPR 77.2 5.5 0.00012 37.9 5.5 83 334-416 275-357 (372)
424 COG4455 ImpE Protein of avirul 76.9 55 0.0012 29.2 13.3 63 90-152 9-71 (273)
425 smart00299 CLH Clathrin heavy 76.6 41 0.0009 27.7 15.8 50 56-106 15-64 (140)
426 TIGR02710 CRISPR-associated pr 75.6 88 0.0019 31.0 13.7 57 51-107 133-196 (380)
427 KOG4014 Uncharacterized conser 74.8 55 0.0012 28.2 16.1 137 279-432 48-198 (248)
428 PF13041 PPR_2: PPR repeat fam 74.7 19 0.00041 23.2 6.3 27 302-328 5-31 (50)
429 smart00101 14_3_3 14-3-3 homol 74.3 72 0.0016 29.4 18.0 59 50-108 3-65 (244)
430 KOG0687 26S proteasome regulat 74.0 84 0.0018 30.0 12.3 29 116-144 104-132 (393)
431 PF13041 PPR_2: PPR repeat fam 72.9 22 0.00048 22.9 6.3 27 193-219 5-31 (50)
432 PF09205 DUF1955: Domain of un 72.3 31 0.00067 28.0 7.6 49 347-395 99-147 (161)
433 PF14863 Alkyl_sulf_dimr: Alky 71.6 16 0.00034 30.3 6.3 47 371-417 73-119 (141)
434 PF09205 DUF1955: Domain of un 71.5 32 0.0007 27.9 7.6 55 377-431 95-149 (161)
435 KOG4014 Uncharacterized conser 71.2 68 0.0015 27.7 13.7 63 190-253 33-101 (248)
436 PF11846 DUF3366: Domain of un 71.2 17 0.00036 32.3 7.0 49 384-433 127-175 (193)
437 cd02682 MIT_AAA_Arch MIT: doma 70.5 24 0.00051 25.4 6.1 29 48-76 6-34 (75)
438 COG5536 BET4 Protein prenyltra 69.9 83 0.0018 29.3 10.7 159 284-442 50-233 (328)
439 COG3014 Uncharacterized protei 69.8 1.1E+02 0.0023 29.5 14.0 192 210-430 40-255 (449)
440 PF07163 Pex26: Pex26 protein; 69.4 99 0.0022 28.9 14.2 131 49-180 36-181 (309)
441 KOG4279 Serine/threonine prote 67.6 48 0.001 35.3 9.9 196 115-343 200-409 (1226)
442 TIGR02710 CRISPR-associated pr 67.4 1.4E+02 0.0029 29.7 13.7 61 122-182 136-196 (380)
443 PF01535 PPR: PPR repeat; Int 66.4 11 0.00023 21.0 3.3 21 197-217 6-26 (31)
444 PF07219 HemY_N: HemY protein 66.1 28 0.00062 27.2 6.6 28 50-77 61-88 (108)
445 PF01535 PPR: PPR repeat; Int 65.7 11 0.00024 20.9 3.3 24 406-429 4-27 (31)
446 KOG0686 COP9 signalosome, subu 63.8 1.6E+02 0.0034 29.2 14.2 138 301-438 151-311 (466)
447 COG5187 RPN7 26S proteasome re 63.4 1.3E+02 0.0029 28.2 14.2 103 225-328 115-220 (412)
448 KOG4279 Serine/threonine prote 63.1 1.1E+02 0.0024 32.8 11.5 103 46-149 199-320 (1226)
449 cd02680 MIT_calpain7_2 MIT: do 62.8 12 0.00026 26.9 3.5 15 348-362 20-34 (75)
450 cd02682 MIT_AAA_Arch MIT: doma 62.6 56 0.0012 23.6 6.8 23 161-183 10-32 (75)
451 COG5536 BET4 Protein prenyltra 62.3 1.4E+02 0.003 28.0 16.9 183 49-232 32-234 (328)
452 PRK12798 chemotaxis protein; R 62.0 1.8E+02 0.0038 29.1 21.0 103 48-150 112-219 (421)
453 cd02680 MIT_calpain7_2 MIT: do 61.8 14 0.00031 26.5 3.7 33 350-397 3-35 (75)
454 KOG2280 Vacuolar assembly/sort 61.5 2.4E+02 0.0052 30.5 23.6 91 55-149 444-536 (829)
455 PF06957 COPI_C: Coatomer (COP 59.8 61 0.0013 32.5 8.9 105 47-151 203-335 (422)
456 PRK15490 Vi polysaccharide bio 59.7 86 0.0019 32.9 10.2 78 313-392 21-98 (578)
457 TIGR00756 PPR pentatricopeptid 59.0 23 0.00049 20.1 3.9 21 374-394 6-26 (35)
458 KOG0889 Histone acetyltransfer 58.5 5.5E+02 0.012 33.8 22.5 109 334-442 2736-2852(3550)
459 PF10952 DUF2753: Protein of u 58.0 45 0.00098 26.6 6.0 26 338-363 5-30 (140)
460 PHA02537 M terminase endonucle 58.0 12 0.00027 33.8 3.5 34 402-435 169-211 (230)
461 KOG4151 Myosin assembly protei 56.9 30 0.00066 36.9 6.5 97 307-403 60-162 (748)
462 TIGR01162 purE phosphoribosyla 55.8 42 0.0009 28.2 6.0 102 491-621 2-104 (156)
463 KOG0687 26S proteasome regulat 55.8 1.9E+02 0.0042 27.7 13.1 103 157-259 104-215 (393)
464 PF11846 DUF3366: Domain of un 55.5 43 0.00094 29.6 6.7 49 208-257 128-176 (193)
465 PHA02537 M terminase endonucle 55.3 24 0.00053 31.9 4.9 93 58-150 93-212 (230)
466 KOG2561 Adaptor protein NUB1, 55.2 1.3E+02 0.0029 30.0 9.9 54 119-172 166-223 (568)
467 PRK15490 Vi polysaccharide bio 54.8 62 0.0013 34.0 8.3 82 58-141 18-99 (578)
468 cd02679 MIT_spastin MIT: domai 54.7 26 0.00056 25.5 4.1 13 382-394 22-34 (79)
469 PF13812 PPR_3: Pentatricopept 54.6 38 0.00082 19.2 4.3 23 195-217 5-27 (34)
470 PF03745 DUF309: Domain of unk 54.0 70 0.0015 22.0 8.1 58 121-179 4-61 (62)
471 PF04348 LppC: LppC putative l 53.9 4.3 9.3E-05 42.5 0.0 100 46-145 22-127 (536)
472 KOG0292 Vesicle coat complex C 53.4 3.5E+02 0.0077 30.0 21.3 105 338-442 995-1124(1202)
473 PF02670 DXP_reductoisom: 1-de 53.4 42 0.00091 27.3 5.5 83 501-588 9-112 (129)
474 cd02679 MIT_spastin MIT: domai 53.3 24 0.00052 25.7 3.7 15 348-362 22-36 (79)
475 PF02601 Exonuc_VII_L: Exonucl 52.6 1.5E+02 0.0032 28.8 10.4 107 482-591 9-132 (319)
476 PF04212 MIT: MIT (microtubule 52.4 32 0.0007 24.2 4.3 27 50-76 7-33 (69)
477 KOG4521 Nuclear pore complex, 52.2 4.2E+02 0.0092 30.5 14.3 150 302-456 922-1120(1480)
478 PF13226 DUF4034: Domain of un 52.2 2.1E+02 0.0046 27.0 10.8 120 123-242 7-150 (277)
479 KOG0686 COP9 signalosome, subu 52.1 2.5E+02 0.0055 27.9 14.5 128 125-253 119-257 (466)
480 cd02681 MIT_calpain7_1 MIT: do 51.9 31 0.00067 25.0 4.1 29 48-76 6-34 (76)
481 KOG4151 Myosin assembly protei 51.6 66 0.0014 34.6 8.0 103 51-153 56-164 (748)
482 PF10037 MRP-S27: Mitochondria 51.6 2.8E+02 0.006 28.2 14.0 90 340-431 72-167 (429)
483 TIGR03362 VI_chp_7 type VI sec 49.7 2.5E+02 0.0053 27.0 17.9 147 34-185 85-278 (301)
484 KOG0292 Vesicle coat complex C 49.0 3E+02 0.0065 30.5 12.0 33 47-79 990-1022(1202)
485 COG4091 Predicted homoserine d 48.8 55 0.0012 31.5 6.2 88 484-584 14-120 (438)
486 KOG2561 Adaptor protein NUB1, 48.7 1.8E+02 0.0039 29.1 9.7 114 85-219 166-295 (568)
487 PF08311 Mad3_BUB1_I: Mad3/BUB 48.6 1.5E+02 0.0031 24.1 12.7 43 318-360 81-125 (126)
488 COG5187 RPN7 26S proteasome re 48.1 2.4E+02 0.0053 26.5 13.5 106 116-222 115-223 (412)
489 KOG4563 Cell cycle-regulated h 46.6 47 0.001 32.1 5.4 59 44-102 37-103 (400)
490 PF07219 HemY_N: HemY protein 46.5 1E+02 0.0022 24.1 6.7 48 84-131 61-108 (108)
491 PF04840 Vps16_C: Vps16, C-ter 45.9 2.9E+02 0.0063 26.8 25.9 97 311-424 188-284 (319)
492 cd02683 MIT_1 MIT: domain cont 45.8 1.1E+02 0.0025 22.1 6.8 30 47-76 5-34 (77)
493 PF11897 DUF3417: Protein of u 45.0 1E+02 0.0022 24.6 6.4 44 458-501 73-116 (118)
494 PF09797 NatB_MDM20: N-acetylt 44.0 3.4E+02 0.0073 27.0 22.0 43 282-324 199-241 (365)
495 smart00671 SEL1 Sel1-like repe 43.4 56 0.0012 18.8 3.9 14 417-430 20-33 (36)
496 PF04212 MIT: MIT (microtubule 43.2 75 0.0016 22.3 5.0 22 163-184 11-32 (69)
497 cd00280 TRFH Telomeric Repeat 43.1 2.3E+02 0.0049 24.8 9.9 72 132-204 85-157 (200)
498 cd02684 MIT_2 MIT: domain cont 42.5 44 0.00095 24.1 3.7 34 314-362 1-34 (75)
499 KOG2062 26S proteasome regulat 42.3 4.9E+02 0.011 28.3 17.9 291 170-471 370-673 (929)
500 cd00280 TRFH Telomeric Repeat 41.9 2.4E+02 0.0052 24.6 8.9 62 64-126 85-154 (200)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-102 Score=734.48 Aligned_cols=561 Identities=40% Similarity=0.583 Sum_probs=532.4
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
.-++.+-.+|+++..+|++++|+..|+.++++.|++.++|.++|.++...|+.+.|..+|..+++++|+...+...+|.+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 45677778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 205 (625)
+...|+..+|..+|.++++..|....+ |.++|.++..+|+...|+..|+++++++|+..++|++||.+|...+
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAia-------wsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIA-------WSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeee-------ehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 999999999999999999999976444 8889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHH
Q 006937 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (625)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (625)
.+++|+.+|.+++...|+++.++-++|.+|..+|..+-|+..|++++++.|+.++++.+++.++..+ |+..+|
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~-------G~V~ea 339 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDK-------GSVTEA 339 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc-------cchHHH
Confidence 9999999999999999999999999999999999999999999999999999999888888887775 699999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 006937 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (625)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (625)
..+|.+++.+.|..+++.++||.++.++|++++|..+|.++++..|..+.+..+||.+|.++|++++|+.+|+.++.+.|
T Consensus 340 ~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 340 VDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 006937 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (625)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (625)
..++++.++|..|..+|+...|+.+|.+++..+|..++++.+||.+|...|+..+|+..|+.++++.||.+++..|++.+
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCc-----hHHHHHHHHHHH--HHhhh----------------------------------ccccCCCCCCCCC
Q 006937 446 MNYINEGHD-----DKLFEAHRDWGK--RFMRL----------------------------------YSQYTSWDNTKDP 484 (625)
Q Consensus 446 ~~~~~~~~~-----~~~~~~~~~~~~--~~~~~----------------------------------~~~~~~~~~~~~~ 484 (625)
+.++..|.+ .++.+..++|.. ++... .+++..|.+-+.+
T Consensus 500 lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~ 579 (966)
T KOG4626|consen 500 LQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVK 579 (966)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCC
Confidence 999999987 788888888883 33222 1345667777888
Q ss_pred CCCeEEEEecCCcccchHHHHHHHHHhhccCCcEEEEEeecCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHh
Q 006937 485 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRE 564 (625)
Q Consensus 485 ~~~lrig~~s~d~~~h~v~~~~~~~~~~~d~~~~ev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 564 (625)
++||||||||+||++||+++|++.++.+|||+++|||||+.++.++.. ||..+.+++++|.|+++++...+|..|++
T Consensus 580 ~~rlrIGYvSsDFgnHp~Shlmqsv~gmHdr~kveVfcYals~~d~t~---fR~kv~~e~ehf~Dls~i~~~kiA~~I~q 656 (966)
T KOG4626|consen 580 EGRLRIGYVSSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALSVNDGTN---FRDKVMKEAEHFVDLSQIPCNKIADKIRQ 656 (966)
T ss_pred cCceEEEeecccccCCchHHHhccCcCcCCccceEEEEEEeecCCCch---HHHHHHhhccceeehhcCChHHHHHHHhh
Confidence 999999999999999999999999999999999999999987654433 78888888999999999999999999999
Q ss_pred CCCcEEEecCCCCCCchhhhhccCCCceEEecccCCCCCCCCCcceEeecCCCCCCCCC
Q 006937 565 DKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETK 623 (625)
Q Consensus 565 ~~idilvdl~g~t~~~~~~~~~~r~APvq~~~~g~~~t~g~~~~Dy~~~d~~~~p~~~~ 623 (625)
|+|||||+|.|||.|+|.+|||+|||||||+|+|||||||+++|||+|+|.++.|++.-
T Consensus 657 D~I~ILvnlnGyTkgarneifAlrPAPIQv~wlGyPgTtGa~~mDYiITDs~tsPl~~a 715 (966)
T KOG4626|consen 657 DKIHILVNLNGYTKGARNEIFALRPAPIQVMWLGYPGTTGATFMDYIITDSVTSPLELA 715 (966)
T ss_pred cCceEEEeccccccccccceeeccCCceeEEeecCCCCCCCceeeEEeecccCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999998753
No 2
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-50 Score=379.93 Aligned_cols=328 Identities=25% Similarity=0.386 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 282 INQGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 282 ~~~A~~~~~~~l~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
..-++..+...+..++.++..+.. +...+...+....+...+...+..+|.+..+..+++......|....+...+..
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333555555556667777665333 466677778888888888888899999988888888888777766666555554
Q ss_pred -HHccCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 360 -ALSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 360 -al~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
+....|++......+ +.....+|+..++...++++....|.++.+...+.....+.-.+. ...
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~~~ 196 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------EEA 196 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------hcc
Confidence 777888876655444 777888888888888888888888888666655555433333222 233
Q ss_pred CCChhhhhhHHHH-----hhhccCCCchHHHHHHHHHHHHHhhhc---cccCCCCC-CCCCCCCeEEEEecCCcccchHH
Q 006937 433 PDSRNAGQNRLLA-----MNYINEGHDDKLFEAHRDWGKRFMRLY---SQYTSWDN-TKDPERPLVIGYVSPDYFTHSVS 503 (625)
Q Consensus 433 p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~lrig~~s~d~~~h~v~ 503 (625)
|.+........+. ..++.. +.........+....+.... .+++.|.. ....++|+||||+|+|++.|+||
T Consensus 197 ~tnl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Havg 275 (620)
T COG3914 197 PTNLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAVG 275 (620)
T ss_pred chHHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchHH
Confidence 3333222222111 112211 13333344445555444222 23344441 23457899999999999999999
Q ss_pred HHHHHHHhhccCCcEEEEEeecC-ccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCCCcEEEecCCCCCCchh
Q 006937 504 YFIEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKL 582 (625)
Q Consensus 504 ~~~~~~~~~~d~~~~ev~~y~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~idilvdl~g~t~~~~~ 582 (625)
+++.+++++|||++|||++|+.+ ++.|..+.|++..+ ++|.++.+|+|.++|++|+.|+|||||||+|||..+|+
T Consensus 276 ~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~ 351 (620)
T COG3914 276 FLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRC 351 (620)
T ss_pred HHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccch
Confidence 99999999999999999999998 66788999999887 67999999999999999999999999999999999999
Q ss_pred hhhccCCCceEEecccCCCCCCCCCcceEeecCCCCCCCCCC
Q 006937 583 GMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQ 624 (625)
Q Consensus 583 ~~~~~r~APvq~~~~g~~~t~g~~~~Dy~~~d~~~~p~~~~~ 624 (625)
+|||.|||||||||+|||+|||+|.|||||+|++|.||+.|+
T Consensus 352 ~v~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~ 393 (620)
T COG3914 352 QVFAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEE 393 (620)
T ss_pred hhhhcCCCceEEeecccccccCCCcceEEeeCceecCchHHH
Confidence 999999999999999999999999999999999999999874
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-48 Score=367.36 Aligned_cols=400 Identities=29% Similarity=0.446 Sum_probs=374.1
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------------------------HHHHHhHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------------------VEAHIGKGICL 92 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------------------~~~~~~la~~~ 92 (625)
.....+++|...++.|+|++|.+....+...+|.+ .+++.++|.++
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANIL 126 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 44558999999999999999999988776665543 56788899999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 006937 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (625)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (625)
...|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|....+ ...+|..+...|+
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca-------~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA-------RSDLGNLLKAEGR 199 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh-------hcchhHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999987655 7778888899999
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (625)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (625)
..+|..+|.++++..|..+.+|.+||.++..+|+...|+..|+++++++|+..++|+++|.+|...+.+++|+.+|.+++
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 006937 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (625)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 332 (625)
.+.|++.. ++.+++-+|..+|..+-|+..|+++++..|..++++.++|..+...|+..+|..+|.+++.+.|.
T Consensus 280 ~lrpn~A~-------a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 280 NLRPNHAV-------AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred hcCCcchh-------hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 99998755 45566777777899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006937 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (625)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (625)
.+++.++||.++..+|.+++|..+|+++++..|..+.++.+||.+|.++|++++|+.+|+.++.+.|..++++.++|..|
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHHH
Q 006937 413 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462 (625)
Q Consensus 413 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (625)
..+|+...|+++|.+|+.++|...+++.| ++..|-..|+..+++..++
T Consensus 433 ke~g~v~~A~q~y~rAI~~nPt~AeAhsN--Lasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQINPTFAEAHSN--LASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcCcHHHHHHhh--HHHHhhccCCcHHHHHHHH
Confidence 99999999999999999999999999999 4667778888777665543
No 4
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=100.00 E-value=6.9e-44 Score=343.62 Aligned_cols=133 Identities=45% Similarity=0.801 Sum_probs=111.9
Q ss_pred eEEEEecCCcccchHHHHHHHHHhhccCCcEEEEEeecCccC-ChhhHHHHHHhhhcCCceeeCCCCC-HHHHHHHHHhC
Q 006937 488 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKA-DAKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 565 (625)
Q Consensus 488 lrig~~s~d~~~h~v~~~~~~~~~~~d~~~~ev~~y~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 565 (625)
|||||||+||++||+++|+.+++++|||++|||+||+.++.+ +..+.+++..+ ++|+++.+++ +.++|++|++|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~~~----~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRAEA----DHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHHHS----EEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHHhC----CeEEECccCCcHHHHHHHHHHC
Confidence 799999999999999999999999999999999999988653 45666666654 8999999986 68999999999
Q ss_pred CCcEEEecCCCCCCchhhhhccCCCceEEecccCCCCCCCCCcceEeecCCCCCCCCCC
Q 006937 566 KIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQ 624 (625)
Q Consensus 566 ~idilvdl~g~t~~~~~~~~~~r~APvq~~~~g~~~t~g~~~~Dy~~~d~~~~p~~~~~ 624 (625)
+|||||||+|||.++|+.|||+|||||||+|||||+|||+++|||+|+|++++||+.++
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~ 135 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEE 135 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGG
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999998763
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.8e-37 Score=328.30 Aligned_cols=383 Identities=16% Similarity=0.177 Sum_probs=332.3
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
+..+..+|..++..|+|++|+..|+++++..|+ +..+.++|.||..+|++++|+..++++++++|++..++..+|.++.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 455778999999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHH------------------------------HHHHHHH------------------
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPA------------------------------AECLAIV------------------ 159 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~------------------------------~~~~a~~------------------ 159 (625)
.+|++++|+..|..+....+..... +..++..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999999887766544332111 0001110
Q ss_pred --------HHHhHHHH---HHhCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006937 160 --------LTDLGTSL---KLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (625)
Q Consensus 160 --------~~~l~~~~---~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 225 (625)
+..++... ...+++++|++.|++++.. .|....++..+|.++..+|++++|+..|+++++.+|...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 01111111 1236899999999999986 477788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 006937 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 305 (625)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 305 (625)
..+..+|.++...|++++|+..|+++++.+|++...+..++.+ +...|++++|+..|+++++.+|++...+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~-------~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL-------HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 9999999999999999999999999999999988766555554 445689999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH------HHHHHHH-H
Q 006937 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS------LNNLGVV-Y 378 (625)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~~la~~-~ 378 (625)
+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++++.|..... +...+.+ +
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875332 2233333 3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+.
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 447999999999999999999999999999999999999999999999999998876553
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-35 Score=332.24 Aligned_cols=405 Identities=20% Similarity=0.186 Sum_probs=331.5
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
.++..+..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++..|.+..++..++.+
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 542 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGL 542 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34566778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 205 (625)
+...|++++|+..+++++..+|.+... +..++..+...|++++|+..++++++..|.+...+..+|.++...|
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEP-------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhH-------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 888888888888888888888877655 5566777778888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH----------------
Q 006937 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL---------------- 269 (625)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------------- 269 (625)
++++|+..|+++++..|.++..+..+|.++...|++++|+..|+++++..|++...+..++.++
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888766665554443
Q ss_pred -----------HHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 006937 270 -----------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338 (625)
Q Consensus 270 -----------~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 338 (625)
..+|.++...|++++|+..|++++...|+. ..+..++.++...|++++|+..++++++..|++..++.
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred HhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 334555667788888888888888887776 66777888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006937 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (625)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (625)
.+|.++...|++++|+..|+++++..|+++.++..++.++...|+ .+|+.++++++...|+++..+..+|.++...|++
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 888888888888888888888888888888888888888888888 7788888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHH
Q 006937 419 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 461 (625)
Q Consensus 419 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (625)
++|+.+|+++++.+|+++.++.++ +..+...|+.+++.+..
T Consensus 854 ~~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 854 DRALPLLRKAVNIAPEAAAIRYHL--ALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHH--HHHHHHcCCHHHHHHHH
Confidence 888888888888888877776664 44555666666554443
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.5e-34 Score=320.82 Aligned_cols=412 Identities=19% Similarity=0.194 Sum_probs=322.5
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------------------------------CCHHH------
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDS----------------------------------GNVEA------ 84 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----------------------------------~~~~~------ 84 (625)
+.++...+.+|..++..|++++|+..++++++..+ +....
T Consensus 178 P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 178 PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHH
Confidence 45667888999999999999999999999865432 11100
Q ss_pred --------------HHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006937 85 --------------HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (625)
Q Consensus 85 --------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (625)
...+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 258 L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~ 337 (1157)
T PRK11447 258 LAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337 (1157)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 013477888999999999999999999999999999999999999999999999999999999865
Q ss_pred HHH--HHH-----HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 151 PAA--ECL-----AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (625)
Q Consensus 151 ~~~--~~~-----a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 223 (625)
... ..+ ......+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|.
T Consensus 338 ~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 338 NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 421 111 1123456888999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH------------------------------------------HHcCCHHHHHHHHHHHHhcCCCcHHH
Q 006937 224 YAEAYCNMGVIY------------------------------------------KNRGDLESAIACYERCLAVSPNFEIA 261 (625)
Q Consensus 224 ~~~~~~~la~~~------------------------------------------~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (625)
+..++..++.++ ...|++++|+..|+++++.+|+++..
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 887766655544 45677778888888888888877655
Q ss_pred HhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------------
Q 006937 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA--------------- 326 (625)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a--------------- 326 (625)
+..++.+ +...|++++|+..++++++..|.++..++.++..+...+++++|+..++++
T Consensus 498 ~~~LA~~-------~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 498 TYRLAQD-------LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred HHHHHHH-------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 4444443 344567888888888888777777777777666666666666666555432
Q ss_pred -------------------------HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHc
Q 006937 327 -------------------------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (625)
Q Consensus 327 -------------------------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 381 (625)
++..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 2235667777788888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh----hhHHHHhhhccCCCchHH
Q 006937 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG----QNRLLAMNYINEGHDDKL 457 (625)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~~~~~~~~~~~~~~~~~ 457 (625)
|++++|++.++++++..|++..++..+|.++...|++++|+++|++++...|+++... .....+..+...|+.+++
T Consensus 651 g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 651 GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888888888888888888888888888888888888877655322 222235555666777666
Q ss_pred HHHHHH
Q 006937 458 FEAHRD 463 (625)
Q Consensus 458 ~~~~~~ 463 (625)
...+++
T Consensus 731 ~~~y~~ 736 (1157)
T PRK11447 731 LETYKD 736 (1157)
T ss_pred HHHHHH
Confidence 655543
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2e-34 Score=324.43 Aligned_cols=367 Identities=15% Similarity=0.112 Sum_probs=329.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHH--------------H
Q 006937 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC--------------A 118 (625)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 118 (625)
.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45888999999999999999999999999999999999999999999999999999999997643 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (625)
...+|.++...|++++|+..|+++++.+|++..+ +..+|.++...|++++|++.|+++++.+|++..++..++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a-------~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYA-------VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2345788999999999999999999999998765 777899999999999999999999999999877765554
Q ss_pred H------------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006937 199 V------------------------------------------VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (625)
Q Consensus 199 ~------------------------------------------~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 236 (625)
. ++...|++++|++.|+++++.+|+++.+++.+|.++.
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4 4456799999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH-------------------------------------Hhchhhhhc
Q 006937 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALT-------------------------------------DLGTKVKLE 279 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------------------------------------~l~~~~~~~ 279 (625)
..|++++|+..++++++..|+++.....++..+. .++..+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 9999999999999999999998876655443322 234455667
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
|++++|+.+++ ..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|++.+++
T Consensus 587 G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 587 GKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777877765 57889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA------EAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 360 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
+++..|+++.++..+|.++...|++++|++.+++++...|+.+ .++..+|.++...|++++|+..|++++.
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999876543 4667789999999999999999999986
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-33 Score=318.68 Aligned_cols=392 Identities=21% Similarity=0.219 Sum_probs=323.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (625)
..+.++..+...|++++|+..+++.+...|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 34445556666666666666666666666777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 006937 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (625)
Q Consensus 130 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~ 209 (625)
|++++|+..|++++...|.+... +..++.++...|++++|+..+++++..+|.+...+..++.++...|++++
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRA-------ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHH
Confidence 77777887777777777776554 55667777778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHH
Q 006937 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (625)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (625)
|+..++++++..|.++..+..+|.++...|++++|+..|+++++..|.+...+..+ +.++...|++++|+..+
T Consensus 586 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 586 ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL-------ADAYAVMKNYAKAITSL 658 (899)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH-------HHHHHHcCCHHHHHHHH
Confidence 88888888888888888888888888888999999999988888888876555444 44444567999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 006937 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (625)
Q Consensus 290 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 369 (625)
+++++.+|++..++..++.++...|++++|+..++.+.+..|.+...+..+|.++...|++++|+..|++++...|++ .
T Consensus 659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 737 (899)
T TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q 737 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998887 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhc
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 449 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 449 (625)
.+..++.++...|++++|++.++++++..|++..++..+|.++...|++++|+..|+++++.+|+++.++.++ +..+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL--AWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHH
Confidence 7888999999999999999999999999999999999999999999999999999999999999988877664 44444
Q ss_pred cCCCchHHHH
Q 006937 450 NEGHDDKLFE 459 (625)
Q Consensus 450 ~~~~~~~~~~ 459 (625)
..++ .+...
T Consensus 816 ~~~~-~~A~~ 824 (899)
T TIGR02917 816 ELKD-PRALE 824 (899)
T ss_pred hcCc-HHHHH
Confidence 5555 44433
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.1e-33 Score=297.84 Aligned_cols=394 Identities=11% Similarity=0.001 Sum_probs=343.3
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
......+...+..+...|++.+|+.+++.++...|+++.+++.+|.+....|++++|+..|+++++.+|+++.++..+|.
T Consensus 39 ~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~ 118 (656)
T PRK15174 39 AGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVAS 118 (656)
T ss_pred cccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (625)
++...|++++|+..|++++..+|++... +..++.++...|++++|+..+++++...|+++.++..++ .+...
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a-------~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~ 190 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQI-------FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNK 190 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHc
Confidence 9999999999999999999999998876 667788888999999999999999999999998887765 48899
Q ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHH
Q 006937 205 MQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 283 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 283 (625)
|++++|+..++++++..| ........++.++...|++++|+..+++++...|++...+..++.++.. .|+++
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-------~G~~~ 263 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-------SGRSR 263 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCch
Confidence 999999999999999876 3344556678899999999999999999999999988766666665555 56776
Q ss_pred H----HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 284 Q----GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 284 ~----A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
+ |+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++
T Consensus 264 eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 264 EAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 360 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
++..+|++...+..+|.++...|++++|+..|+++++.+|++. ...+++|...|.++++..+.....
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~~~- 410 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLPPER- 410 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCccch-
Confidence 9999999988888889999999999999999999999999864 345567888888888876655333
Q ss_pred hhHHHHhhhccCCCchHHHHHHHHHHH
Q 006937 440 QNRLLAMNYINEGHDDKLFEAHRDWGK 466 (625)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (625)
......++.-..+.....|+...+|+.
T Consensus 411 ~~W~~~~~~~~~~~~~~~~~~~~~~~~ 437 (656)
T PRK15174 411 LDWAWEVAGRQSGIERDEWERRAKWGY 437 (656)
T ss_pred hhHHHHHhcccccCChHHHHHHHHhhH
Confidence 112233333333445566666666764
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=7.2e-33 Score=293.31 Aligned_cols=364 Identities=20% Similarity=0.173 Sum_probs=309.1
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006937 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (625)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 161 (625)
...+..+|..++..|++++|+..|+++++..|+ +..+.++|.+|..+|++++|+..++++++++|++..+ +.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a-------~~ 198 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA-------LN 198 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-------HH
Confidence 345778899999999999999999999999996 7789999999999999999999999999999998776 77
Q ss_pred HhHHHHHHhCChHHHHHHHHHHHhhCCCC------------------------------HHHH-----------------
Q 006937 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHY------------------------------APAY----------------- 194 (625)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------------------------------~~~~----------------- 194 (625)
.+|.++...|++++|+..|..+...++.. ...+
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 78888888999999988776654433221 1111
Q ss_pred ----------------HHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 195 ----------------YNLGVVY---SELMQYDTALGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (625)
Q Consensus 195 ----------------~~la~~~---~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (625)
..++..+ ...+++++|++.|+++++. .|....++..+|.++..+|++++|+..|++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111 1236799999999999986 47778899999999999999999999999999
Q ss_pred hcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 006937 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (625)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 332 (625)
+.+|+....+..++.++. ..|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 359 ~l~P~~~~~~~~la~~~~-------~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNL-------ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HcCCCcHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 999998766655555554 4679999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH------HH
Q 006937 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA------YN 406 (625)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~ 406 (625)
+...+..+|.++..+|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++.+.|+.... +.
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999875332 22
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHHH
Q 006937 407 NLG-VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 462 (625)
Q Consensus 407 ~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (625)
..+ .++...|++++|+.+++++++++|++..++.. ++..+...|+.+++.+..+
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~--la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT--MAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHccCHHHHHHHHH
Confidence 333 33445799999999999999999998876654 4666777787776655443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.4e-32 Score=289.54 Aligned_cols=368 Identities=12% Similarity=0.018 Sum_probs=327.1
Q ss_pred HhCCCHHHHHHHHHHHHHc---CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 006937 59 RSRNKFVDALALYEIVLEK---DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (625)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (625)
+++.+|+.-.-++...-+. ..++..-....+..+...|++++|+..++.++...|+++.++..+|.+....|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 3444454444444444333 2334455667778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215 (625)
Q Consensus 136 ~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 215 (625)
+..|++++..+|++..+ +..+|.++...|++++|+..|++++..+|++..++..++.++...|++++|+..++
T Consensus 96 ~~~l~~~l~~~P~~~~a-------~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 96 LQVVNKLLAVNVCQPED-------VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHhCCCChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999887 67788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 216 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
+++...|+++..+..++ .+...|++++|+..+++++...|...... ...++..+...|++++|+..++++++.
T Consensus 169 ~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~------~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 169 TQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES------AGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH------HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999998887765 48889999999999999998876432211 122344556678999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 006937 296 NWHYADAMYNLGVAYGEMLKFDM----AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 371 (625)
Q Consensus 296 ~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 371 (625)
+|+++.++..+|.++...|++++ |+..|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.++
T Consensus 242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999986 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 372 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 372 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|++.....
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~ 390 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSF 390 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhH
Confidence 999999999999999999999999999999888888899999999999999999999999999764433
No 13
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-31 Score=247.30 Aligned_cols=382 Identities=17% Similarity=0.166 Sum_probs=317.0
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
+..+-.+|+.++..|+|++||++|.++++..|+.+..+.+++-||...|++++.++...++++++|+...+++..+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH--------------------------------------------
Q 006937 128 DEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTD-------------------------------------------- 162 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~-------------------------------------------- 162 (625)
..|++++|+....-..-.. -++.......-+++..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 9999999876543221100 0000000000000000
Q ss_pred -----h--HHHHHHh---CChHHHHHHHHHHHhhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 163 -----L--GTSLKLA---GNTQDGIQKYYEALKID----PHY---------APAYYNLGVVYSELMQYDTALGCYEKAAL 219 (625)
Q Consensus 163 -----l--~~~~~~~---~~~~~A~~~~~~~l~~~----~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 219 (625)
+ +.-.... ..|.+|...+.+..... ..+ +.++...|..++-.|++-.|.+.|+++++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0 0011111 24555555555443321 112 56788888999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC
Q 006937 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 299 (625)
Q Consensus 220 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 299 (625)
++|.+...|..++.+|...++.++....|.++.+++|.+++.++..+.+++-+ +++++|+.-|++++.++|++
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL-------~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL-------QQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH-------HHHHHHHHHHHHHhhcChhh
Confidence 99999999999999999999999999999999999999998777766666654 69999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------CHHHHHH
Q 006937 300 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSLNN 373 (625)
Q Consensus 300 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~ 373 (625)
.-++..++.+.+++++++++...|+.+.+..|..++++...|.++..++++++|++.|.+++++.|. ++..+..
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 5555555
Q ss_pred HHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 374 LGVVYT-VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 374 la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
.|.+.. -.+++..|+.+++++++++|....++..||.+..++|+.++|+++|++++.+.-...
T Consensus 508 Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 508 KALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred hhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 554433 458999999999999999999999999999999999999999999999998765433
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=1.3e-30 Score=280.73 Aligned_cols=410 Identities=14% Similarity=0.090 Sum_probs=340.7
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+.+....-....++...|++++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|.++.++..++.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35566677778888999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (625)
++...|++++|+..++++++..|++.. + ..+|.++...|++++|+..++++++..|++..++..++.++...
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~-------~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-L-------LALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-H-------HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999866 3 44577777889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhcCCCcHHHHhhHHHHHHH
Q 006937 205 MQYDTALGCYEKAALERPMYA-----EAYCNMGVIYK-----NRGDL---ESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 271 (625)
+..++|+..++++.. .|... .....+..+.. ..+++ ++|+..++.+++..|.++........+...
T Consensus 164 ~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 164 RLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 999999999987775 44321 11222222222 22334 789999999997766555443333333333
Q ss_pred -hchhhhhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHH
Q 006937 272 -LGTKVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYK 345 (625)
Q Consensus 272 -l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~ 345 (625)
++ .+...+++++|+..|+++++..+..+ .+...+|.++...|++++|+..|+++++.+|.+ ......++.++.
T Consensus 243 ~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 33 23456899999999999998865432 344457999999999999999999999988765 456778888899
Q ss_pred HcCCHHHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006937 346 DRDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (625)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (625)
..|++++|+..++++....|. ...++..++.++...|++++|++.+++++...|++..++..+|.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999988763 23577899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHHHHHHH
Q 006937 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466 (625)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (625)
++...|++++|++.++++++++|++..+.... ++.++..++.+++....++...
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~--a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQ--AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH--HHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999877664 4566677776666655555444
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-31 Score=263.36 Aligned_cols=331 Identities=22% Similarity=0.270 Sum_probs=262.2
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
+.++-.++..|.+.+..|+|..|+.+|++++..+|.. ++....+|.|+.++|+.+.|+..|+++++++|.+..++..||
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 4567788999999999999999999999999999974 578889999999999999999999999999999888888888
Q ss_pred HHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHH------------------------------HHHHHhHHHHHHh
Q 006937 124 ILYKDEG---RLVEAAESYHKALSADPSYKPAAECLA------------------------------IVLTDLGTSLKLA 170 (625)
Q Consensus 124 ~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~a------------------------------~~~~~l~~~~~~~ 170 (625)
.+-.... .+..++..+.++...++.++.+...++ ..++.+|.++..+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 7766554 356778888888888887776644443 3467789999999
Q ss_pred CChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHH
Q 006937 171 GNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG----DLESAI 245 (625)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~ 245 (625)
|++++|..+|.++++.++++ .-.++.+|..|...|+++.|..+|++.++..|++.++...+|.+|...+ ..+.|.
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 99999999999999999988 7788999999999999999999999999999999999999999998876 678889
Q ss_pred HHHHHHHhcCCCcHHHHhhHHHHH-------------------------------HHhchhhhhcCCHHHHHHHHHHHHh
Q 006937 246 ACYERCLAVSPNFEIAKNNMAIAL-------------------------------TDLGTKVKLEGDINQGVAYYKKALY 294 (625)
Q Consensus 246 ~~~~~al~~~~~~~~~~~~~~~~~-------------------------------~~l~~~~~~~~~~~~A~~~~~~~l~ 294 (625)
.++.++++..|.+..++..++.++ .++|..++..|++.+|...|.+++.
T Consensus 401 ~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 401 NVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 999999999888888877776654 2345556677888888888888776
Q ss_pred h-----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006937 295 Y-----NWHY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (625)
Q Consensus 295 ~-----~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (625)
. +++. ....+++|.++...++++.|.+.|..+++.+|....++..+|......++..+|..+++.++..+
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 5 1111 23467788888888777777777777777777666666666655555555555555555555555
Q ss_pred CCCHHHHHHHH
Q 006937 365 PNFSQSLNNLG 375 (625)
Q Consensus 365 ~~~~~~~~~la 375 (625)
..++.++..+|
T Consensus 561 ~~np~arsl~G 571 (1018)
T KOG2002|consen 561 SSNPNARSLLG 571 (1018)
T ss_pred cCCcHHHHHHH
Confidence 44444444433
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=6e-31 Score=283.27 Aligned_cols=380 Identities=15% Similarity=0.086 Sum_probs=321.4
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
.+..+..+..+|..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..++++++..|+++. +..+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 34567779999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH-----HHHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYNLG 198 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la 198 (625)
.++...|++++|+..++++++..|++... +..++.++...+..++|+..++++.. .|... .....+.
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~-------~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~ 195 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQY-------PTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELV 195 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887 55567777788999999999987775 54421 1122222
Q ss_pred HHHH-----HcCCH---HHHHHHHHHHHHhCCCCHHH-------HHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 199 VVYS-----ELMQY---DTALGCYEKAALERPMYAEA-------YCN-MGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (625)
Q Consensus 199 ~~~~-----~~~~~---~~A~~~~~~al~~~~~~~~~-------~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (625)
.+.. ..+++ ++|+..++++++..|.++.. ... ++ .+...|++++|+..|+++++..+..+..
T Consensus 196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~- 273 (765)
T PRK10049 196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPW- 273 (765)
T ss_pred HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHH-
Confidence 2222 22345 78999999999764433322 222 33 3467799999999999999886443321
Q ss_pred hhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------
Q 006937 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------ 332 (625)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------ 332 (625)
....++.++...|++++|+..|+++++.+|.+ ......++.++...|++++|+..++++....|.
T Consensus 274 -----a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~ 348 (765)
T PRK10049 274 -----AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYG 348 (765)
T ss_pred -----HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecC
Confidence 11113556666889999999999999888765 456777888899999999999999999998763
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 006937 333 ---------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 333 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
...++..+|.++...|++++|++.+++++...|.+..++..+|.++...|++++|++.+++++.++|++..
T Consensus 349 ~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 349 SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 24577899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
+++.+|.++...|++++|...++++++..|+++.+.
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999998664
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.2e-29 Score=272.53 Aligned_cols=389 Identities=14% Similarity=0.061 Sum_probs=306.5
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
..+.+..++..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|++...+..++
T Consensus 40 ~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La 119 (987)
T PRK09782 40 RHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLA 119 (987)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------------------------------HHHhHHHHHHh
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV---------------------------------LTDLGTSLKLA 170 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~---------------------------------~~~l~~~~~~~ 170 (625)
.+ +++++|+..|+++++.+|++.++...++.+ ...++.+|..+
T Consensus 120 ~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 120 AI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred Hh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHH
Confidence 76 999999999999999999999888777765 12236778888
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHH-------------------------------HHHcCCHHHHHH-------
Q 006937 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVV-------------------------------YSELMQYDTALG------- 212 (625)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~-------------------------------~~~~~~~~~A~~------- 212 (625)
+++++|+..+.++++..|.+......++.+ |...|+.++|.+
T Consensus 196 ~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 196 KQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 999989888888777655543333322222 222333333332
Q ss_pred --------------------------------------------------------------------------------
Q 006937 213 -------------------------------------------------------------------------------- 212 (625)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (625)
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT 355 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcccc
Confidence
Q ss_pred ------------------------------------------HHHHHHH-------------------------------
Q 006937 213 ------------------------------------------CYEKAAL------------------------------- 219 (625)
Q Consensus 213 ------------------------------------------~~~~al~------------------------------- 219 (625)
.|+++..
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 2222110
Q ss_pred ----------------------------------hCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHh
Q 006937 220 ----------------------------------ERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (625)
Q Consensus 220 ----------------------------------~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 263 (625)
..|. ++.+++++|.++.. ++..+|+..+.+++...|+... ..
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-~L 513 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-HR 513 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-HH
Confidence 1133 55677888888887 7888899888888888887532 22
Q ss_pred hHHHHH--------------------------HHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH
Q 006937 264 NMAIAL--------------------------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 317 (625)
Q Consensus 264 ~~~~~~--------------------------~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 317 (625)
.++.++ ..+|.++...|++++|+.+++++++..|.....+..++......|+++
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHH
Confidence 222221 223444566778888888888888888877777777776667778888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 318 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
+|+..|+++++.+|+ ..++.++|.++.+.|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++.
T Consensus 594 eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 594 LALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888888888886 8888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 398 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 398 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
+|+++.+++++|.++..+|++++|+.+|+++++++|++....
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 888888888888888888888888888888888888876554
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-30 Score=258.45 Aligned_cols=395 Identities=19% Similarity=0.249 Sum_probs=345.2
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
...++.++.+|+.+..+|+|++|..+|.++++.+|++ .-.++.+|..++..|+++.|+.+|+++++..|++.+....+|
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3567789999999999999999999999999999988 788999999999999999999999999999999999999999
Q ss_pred HHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHH-------------------------------HHHhHHHHH
Q 006937 124 ILYKDEG----RLVEAAESYHKALSADPSYKPAAECLAIV-------------------------------LTDLGTSLK 168 (625)
Q Consensus 124 ~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~a~~-------------------------------~~~l~~~~~ 168 (625)
.+|...+ ..+.|..+..++++..|.+..++..++.+ +.++|..++
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 9998876 67889999999999999998888777764 345788888
Q ss_pred HhCChHHHHHHHHHHHhh-----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 006937 169 LAGNTQDGIQKYYEALKI-----DPH-----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (625)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~-----~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 238 (625)
..|++.+|...|.+++.. +++ +....+++|.++...++++.|.+.|..+++.+|...+++..+|.+....
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence 999999999999998876 222 2345889999999999999999999999999999999999999888888
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHh----
Q 006937 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGE---- 312 (625)
Q Consensus 239 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~---- 312 (625)
++..+|...++.++..+..++.++..++..+ .....+..|.+-|+..++... .++.+...||+++++
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~-------l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLH-------LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHH-------HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 9999999999999999998887766555444 445677777776666654422 456778888887764
Q ss_pred --------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCH
Q 006937 313 --------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (625)
Q Consensus 313 --------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (625)
.+.+++|++.|.++++.+|.|..+-+.+|.++...|++.+|+..|.++.+--.++..+|.++|.||..+|+|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 345889999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHh
Q 006937 385 DAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 446 (625)
Q Consensus 385 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 446 (625)
-.|++.|+.+++.. .++.+++..||.++...|++.+|.+...+++.+.|.++....|+.+.+
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 99999999999874 366899999999999999999999999999999999999988876543
No 19
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-29 Score=234.91 Aligned_cols=390 Identities=21% Similarity=0.226 Sum_probs=334.4
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (625)
..+...|+..+..|+|+.|+.+|..++.++|.|...+.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..+..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH---------HHHH-hCC-------hHHHHHHHHHHHhh-----
Q 006937 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT---------SLKL-AGN-------TQDGIQKYYEALKI----- 186 (625)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~---------~~~~-~~~-------~~~A~~~~~~~l~~----- 186 (625)
.|+|++|+..|.+.++.+|++......++.+...... .+.. .++ .+.+.....+.+..
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999999999999998887776665521100 0000 000 00011111111111
Q ss_pred ------------------------------------CCC---------------------CHHHHHHHHHHHHHcCCHHH
Q 006937 187 ------------------------------------DPH---------------------YAPAYYNLGVVYSELMQYDT 209 (625)
Q Consensus 187 ------------------------------------~~~---------------------~~~~~~~la~~~~~~~~~~~ 209 (625)
.|. .......+|...++..++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 110 02345678999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHH
Q 006937 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 289 (625)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 289 (625)
|++.|.+++.++ .+...+.+.+.+|...|.+.+.+.....+++...........++.++..+|..+...++++.++.+|
T Consensus 243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 999999999999 8889999999999999999999999999998888777777788999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 006937 290 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 369 (625)
Q Consensus 290 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 369 (625)
++++..... ..+.......++++...+...-++|.-..--...|..++..|+|..|+..|.++++.+|+++.
T Consensus 322 ~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 322 QKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 998876554 556667777888888888888889988888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhh
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 447 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 447 (625)
.|.+.|.||.++|++..|+...+.+++++|+...+|..-|.++..+.+|++|.+.|.++++.+|++.++.....-+..
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988777544443
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=9.2e-27 Score=250.33 Aligned_cols=361 Identities=13% Similarity=0.048 Sum_probs=309.3
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCC---
Q 006937 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGR--- 131 (625)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~--- 131 (625)
....+++.+|...++...+..|.+...+..++......|++++|...|+++....++. ......++.+|...+.
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 3455788888888888888889999999999999999999999999999998863321 2234467777766544
Q ss_pred ----------------------HHH---HHHHHHHHHhcCCC--CHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 006937 132 ----------------------LVE---AAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (625)
Q Consensus 132 ----------------------~~~---A~~~~~~al~~~~~--~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (625)
+.+ +...+.+++...|. +... +..+|.++.. ++..+|+..+.+++
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a-------~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA-------WNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH-------HHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 222 23334444455555 5444 7778888776 89999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh
Q 006937 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (625)
Q Consensus 185 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 264 (625)
...|++. ....+|.++...|++++|+..+++++...|.. ..+..+|.++...|++++|+.+++++++..|........
T Consensus 504 ~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~ 581 (987)
T PRK09782 504 QRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW 581 (987)
T ss_pred HhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH
Confidence 9999854 46677888889999999999999988776654 557899999999999999999999999999887543332
Q ss_pred HHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 006937 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344 (625)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 344 (625)
++......|++++|+..++++++.+|+ ..++..+|.++.+.|++++|+..|++++..+|+++.++.++|.++
T Consensus 582 -------La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 582 -------LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred -------HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 233333458999999999999999996 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (625)
Q Consensus 345 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (625)
...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|++..+....|.+.....+++.|.+.
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCh
Q 006937 425 YEQCLKIDPDSR 436 (625)
Q Consensus 425 ~~~al~~~p~~~ 436 (625)
+++...++|+..
T Consensus 734 ~~r~~~~~~~~~ 745 (987)
T PRK09782 734 VGRRWTFSFDSS 745 (987)
T ss_pred HHHHhhcCccch
Confidence 999999999977
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.6e-27 Score=217.71 Aligned_cols=361 Identities=20% Similarity=0.203 Sum_probs=288.6
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006937 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (625)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 162 (625)
..+-..|.-++..|+|++|+++|.+++++.|+.+..+.+++-||...|++++.++...++++++|+...+ ++.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA-------l~R 188 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA-------LLR 188 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH-------HHH
Confidence 3456678889999999999999999999999999999999999999999999999999999999998877 666
Q ss_pred hHHHHHHhCChHHHHHHHH------------------HHHhh--------------CCCCH-------------------
Q 006937 163 LGTSLKLAGNTQDGIQKYY------------------EALKI--------------DPHYA------------------- 191 (625)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~------------------~~l~~--------------~~~~~------------------- 191 (625)
.+..+...|++.+|+.-.. +.++. .|.-+
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 6666666677777664331 11111 11110
Q ss_pred --------HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHH
Q 006937 192 --------PAYYNLGVVYSELM---QYDTALGCYEKAALER----PMY---------AEAYCNMGVIYKNRGDLESAIAC 247 (625)
Q Consensus 192 --------~~~~~la~~~~~~~---~~~~A~~~~~~al~~~----~~~---------~~~~~~la~~~~~~g~~~~A~~~ 247 (625)
+.-..-+.-+...+ .|.+|...+.+..... ..+ ..++...|..++-.|++..|...
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 00011111111122 4566666655543321 112 56778888889999999999999
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006937 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (625)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 327 (625)
|+.++.++|.+... |..++..|....+.++....|.++..++|+++++|+..|.+++-++++++|+.-|++++
T Consensus 349 ~~~~I~l~~~~~~l-------yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 349 FDAAIKLDPAFNSL-------YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred HHHHHhcCcccchH-------HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987754 55555566667899999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------c
Q 006937 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------Y 401 (625)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 401 (625)
.++|++...+..++.+.+++++++++...|+.+.+..|+.++++...|.++..++++++|++.|++++++.|. +
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHH
Q 006937 402 AEAYNNLGVLY-RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 459 (625)
Q Consensus 402 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (625)
+..+.+.|.+. .-.+++..|+..+++|++++|....+...+ +..-+..++.+++++
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl--aq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL--AQFELQRGKIDEAIE 558 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH--HHHHHHHhhHHHHHH
Confidence 55555444433 235899999999999999999998888764 333344555544443
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=4.5e-28 Score=234.44 Aligned_cols=306 Identities=20% Similarity=0.282 Sum_probs=276.4
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 006937 118 AHTHCGILYK--DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (625)
Q Consensus 118 ~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (625)
.+..+|..|. .+-+..+|+..|++.-...++.. .++..+|..|+.+++|++|.++|+.+-+..|-.....-
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~-------wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~me 391 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTG-------WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGME 391 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchh
Confidence 4555555554 34567899999999555555543 34888999999999999999999999999998877777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchh
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~ 275 (625)
.+..+++.+.+--+---+.+..++.+|+.|+.|..+|.+|..+++++.|+++|++++.++|.+.. +|..+|.-
T Consensus 392 iyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY-------ayTLlGhE 464 (638)
T KOG1126|consen 392 IYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY-------AYTLLGHE 464 (638)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch-------hhhhcCCh
Confidence 77788888877666666667788999999999999999999999999999999999999998643 55666777
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355 (625)
Q Consensus 276 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 355 (625)
+.....++.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.
T Consensus 465 ~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 465 SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHH
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
+|++|+.++|.++-..+..|.++..++++++|+..+++.-++.|+...+++.+|.+|.++|+.+.|+..|.-|+.++|.-
T Consensus 545 ~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hh
Q 006937 436 RN 437 (625)
Q Consensus 436 ~~ 437 (625)
.+
T Consensus 625 ~~ 626 (638)
T KOG1126|consen 625 AQ 626 (638)
T ss_pred ch
Confidence 65
No 23
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-26 Score=218.74 Aligned_cols=389 Identities=21% Similarity=0.237 Sum_probs=330.2
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHH------HhcCCCc----
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA------VKLDPQN---- 115 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~---- 115 (625)
.++...+.+|++++-.|+|..|....+.- +.+..+....+..+.|+....++++|+..+... +..+|.+
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 67888899999999999999998888775 556677888999999999999999999888732 1111211
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------------------
Q 006937 116 ---------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV--------------------- 159 (625)
Q Consensus 116 ---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~--------------------- 159 (625)
....+..|.+|....+.++|...|.+++..++.+.++...+...
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~ 205 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT 205 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence 23456778889999999999999999998877765543322211
Q ss_pred -----------------------------------------HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 160 -----------------------------------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (625)
Q Consensus 160 -----------------------------------------~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (625)
+...+..++..+++.+..+..+..++.+|-+...+...-
T Consensus 206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i 285 (611)
T KOG1173|consen 206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI 285 (611)
T ss_pred hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence 112345667778888888888888888888877765555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh
Q 006937 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
.++.+.|+..+-...-.+.++..|+.+-.|+..|..|...|++.+|..+|.++..++|....+|...+..+..
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~------- 358 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG------- 358 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-------
Confidence 5888888888888888888899999999999999999999999999999999999999988877766666555
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
.+..++|+..|..+-++.|........+|.-|...++++.|.++|.+++.+.|.++-++..+|.+.+..+.|.+|..+|+
T Consensus 359 e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 67999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCC----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 359 MALSIKP----N---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 359 ~al~~~~----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
+++..-+ . -...+.++|.++.+++.+++|+.++++++.+.|.++.++..+|.+|..+|+++.|+++|.++|-+
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9994321 1 23478999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhH
Q 006937 432 DPDSRNAGQNR 442 (625)
Q Consensus 432 ~p~~~~~~~~~ 442 (625)
.|++..+..-+
T Consensus 519 ~p~n~~~~~lL 529 (611)
T KOG1173|consen 519 KPDNIFISELL 529 (611)
T ss_pred CCccHHHHHHH
Confidence 99997665443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.96 E-value=4.7e-25 Score=232.44 Aligned_cols=392 Identities=13% Similarity=0.012 Sum_probs=274.1
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
.+..++..+..+...++.|++..|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|.....+..+|
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 34567789999999999999999999999999999999755558888889999999999999999944444555555568
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (625)
.++...|++++|++.|+++++.+|+++.. +..++..+...++.++|++.++++...+|..... ..++.++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~-------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~ 181 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDL-------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA 181 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh
Confidence 89999999999999999999999999876 4566778888899999999999999999986554 566667766
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------------------
Q 006937 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER--------------------------------- 250 (625)
Q Consensus 204 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------------------------- 250 (625)
.++..+|++.++++++.+|++.+++..+..++...|-...|.+...+
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 78887899999999999999999988888888777766655554442
Q ss_pred ---------------HHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcC
Q 006937 251 ---------------CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEML 314 (625)
Q Consensus 251 ---------------al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~ 314 (625)
.+...+..+........+....-..+...+++.+++..|+...... +--..+....|..|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 2221111111111111111122222334556666666666655433 222345556666666666
Q ss_pred CHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---------------CCHHHHHH
Q 006937 315 KFDMAIVFYELAFHFNP------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---------------NFSQSLNN 373 (625)
Q Consensus 315 ~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---------------~~~~~~~~ 373 (625)
++++|+.+|++++.-.+ ........|...+...+++++|..++++..+..| +..+....
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 66666666666665432 2233345566666666666666666666665322 22345555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 006937 374 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (625)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (625)
++.++...|++.+|++.+++.+...|.+..++..+|.++...|++.+|...++.+..++|++..+.....
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666555543
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-25 Score=207.67 Aligned_cols=361 Identities=17% Similarity=0.161 Sum_probs=189.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--QNACAHTHCGILYKD 128 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~ 128 (625)
++..|.++.+.|....|++.|..++...|-+..+|..++.+.... +........-| .+.-.-..++.++..
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 334444444555555555555555444454444444444432211 11111111112 122222333444444
Q ss_pred cCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 006937 129 EGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (625)
Q Consensus 129 ~g~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 207 (625)
..+.++++.-++..... .|.+... -...|.+.+.+.++++|+..|+.+.+.+|-..+-.-...++++-.++-
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i-------~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYI-------KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 44555555555555544 3433322 223344444455566666666665555555544444445544444443
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHH
Q 006937 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (625)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (625)
.+-.-+.+.+.+++.-.++....+|+.|...++.++|+.+|+++++++|....+|..++.-|.. .++...|++
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-------mKNt~AAi~ 385 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-------MKNTHAAIE 385 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-------hcccHHHHH
Confidence 4433344444455555555555566666666666666666666666666554444433333333 345566666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 006937 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (625)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 367 (625)
.|+++++++|.+-.+|+.+|+.|.-++-..=|+-+|+++....|.+...|..||.+|.+.++.++|+++|.+++.....+
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666665555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
..++..+|.+|.++++.++|..+|++.++ ..|+...+...|+.-+.+.+++++|..+..+++.-+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 56666666666666666666666666655 233334455556666666666666666555555543
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3.2e-27 Score=228.58 Aligned_cols=296 Identities=19% Similarity=0.223 Sum_probs=153.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006937 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (625)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (625)
.....-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-+..|-..+..-.+..++....+--+--
T Consensus 328 ~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls 407 (638)
T KOG1126|consen 328 RSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS 407 (638)
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH
Confidence 33344445555555555444444545555555555555555555555555555555544443333344444443333222
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (625)
Q Consensus 137 ~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 216 (625)
.+.+..+..+|..++. |..+|.++..+++++.|+++|+++++++|....+|..+|.-+.....++.|..+|++
T Consensus 408 ~Laq~Li~~~~~sPes-------Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPES-------WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHHhhCCCCcHH-------HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 3333444444444444 444455555555555555555555555555555555555555555555555555555
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC
Q 006937 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 296 (625)
Q Consensus 217 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 296 (625)
++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP---------------------------------------- 520 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP---------------------------------------- 520 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc----------------------------------------
Confidence 5555555555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 006937 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (625)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (625)
.+......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++...+++++|+..+++..++.|+...++..+|.
T Consensus 521 -~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgk 599 (638)
T KOG1126|consen 521 -SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGK 599 (638)
T ss_pred -cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 377 VYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
+|.+.|+.+.|+..|.-|..++|.
T Consensus 600 i~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 600 IYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHccchHHHHhhHHHhcCCCc
Confidence 555555555555555555555554
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.96 E-value=1.8e-25 Score=223.03 Aligned_cols=376 Identities=15% Similarity=0.126 Sum_probs=306.9
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
.....++..|+.++..|++++|..++.++++++|.++.+|+.+|.+|..+|+.+++...+-.|-.++|.+.+.|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVV 200 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~ 200 (625)
..++|++.+|.-+|.++++.+|.+... ....+.++.+.|+...|...|.+++...|.. .......+..
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~-------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWEL-------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHH-------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999776 6677788888899999999999999999832 2233455778
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcH-----------------
Q 006937 201 YSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFE----------------- 259 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~----------------- 259 (625)
+...++-+.|++.++.++.... ...+.+..++.++.....++.|.......... .+++.
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 8888888999999999998432 34456778899999999999998887765541 11111
Q ss_pred ---HHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CH
Q 006937 260 ---IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CA 334 (625)
Q Consensus 260 ---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~ 334 (625)
.....+-.+...++.+.....+..+++..+..--...+ +.++.+..++.++...|++.+|+.++..+....+. +.
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 11111222455555556666677777666554433334 35778999999999999999999999998887654 47
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHH
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------AEAY 405 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~ 405 (625)
.+|+.+|.+|..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.+++...-++.+ ....
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999998876444222 3467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~a 428 (625)
.....++...|+.++=+..-...
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 78888999999988855444333
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.1e-25 Score=203.01 Aligned_cols=374 Identities=19% Similarity=0.185 Sum_probs=272.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHH-------------------HHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGR-------------------LAFDSFSE 107 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-------------------~A~~~~~~ 107 (625)
.....+.+|..++..+.|+.|.-.++.... ....+..-.+.+..|..+ ..+..+.+
T Consensus 77 ~~~~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~ 151 (559)
T KOG1155|consen 77 LEKDIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNK 151 (559)
T ss_pred hhcchhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhh
Confidence 345677899999999999999988887644 222222222222222211 11222222
Q ss_pred HHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---------------------
Q 006937 108 AVKL----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD--------------------- 162 (625)
Q Consensus 108 al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~--------------------- 162 (625)
-++. ...++..++..|.++.+.|....|+..+..++...|-+-.+|..+..+...
T Consensus 152 ~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 152 PLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKF 231 (559)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHH
Confidence 2221 234567888999999999999999999999999999988887665543211
Q ss_pred -hHHHHHHhCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006937 163 -LGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (625)
Q Consensus 163 -l~~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 240 (625)
++.++......++++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|-..+-.-....++.-.++
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 223333334445555555554444 455555555555555555555555555555555555444444444444444333
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006937 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (625)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 320 (625)
-.+-.-.-+.+..++.-.++. ..-+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+
T Consensus 312 ~skLs~LA~~v~~idKyR~ET-------CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPET-------CCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hHHHHHHHHHHHHhccCCccc-------eeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH
Confidence 333323333333333322221 2234566666889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 321 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
+.|++|++++|.+-.+|+.+|..|.-++...=|+-+|++|++..|+++..|..||.||.++++.++|+++|.+++.....
T Consensus 385 ~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 385 ESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
+..++..||.+|.++++..+|..+|++.++..
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999843
No 29
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.96 E-value=2.4e-25 Score=197.72 Aligned_cols=324 Identities=19% Similarity=0.222 Sum_probs=242.4
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
.+.+++..+++|..++..|++.+|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHH-----HHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPA---AECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~a~-----~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 195 (625)
.+++++|++++|...|++++..+|++... ...++. .+......+...|+...|++.....+++.|-++..+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 99999999999999999999999965433 222222 2334455667789999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHH---H--H
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA---L--T 270 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~--~ 270 (625)
..+.||...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+..+-.+ - .
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999976433211110 0 0
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (625)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 346 (625)
.-+......+++.++++..++.++.+|..+. ....+..++...+++.+|++.+.+++.++|++..++...|..|+.
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 0011122234444444444444444444221 222333444444444444444444444444444444444444444
Q ss_pred cCCHHHHHHHHHHHHccCCCC
Q 006937 347 RDNLDKAVECYQMALSIKPNF 367 (625)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~ 367 (625)
...|+.|+..|++|.+.++++
T Consensus 354 dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hHHHHHHHHHHHHHHhcCccc
Confidence 444444444444444444444
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=3.8e-25 Score=223.14 Aligned_cols=308 Identities=20% Similarity=0.176 Sum_probs=195.5
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006937 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (625)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 162 (625)
...+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+..... .
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~------ 106 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---R------ 106 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH---H------
Confidence 3444556666666666666666666666666666666666666666666666666666655532211110 1
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 006937 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (625)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 242 (625)
..++..+|.+|...|++++|+..|+++++..|.+..++..++.++...|+++
T Consensus 107 ----------------------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 158 (389)
T PRK11788 107 ----------------------------LLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQ 158 (389)
T ss_pred ----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHH
Confidence 1234555566666666666666666666555555556666666666666666
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006937 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 322 (625)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 322 (625)
+|++.++++++..|.+... ..+..+..++..+...+++++|+..++++++..|+...++..+|.++...|++++|+..
T Consensus 159 ~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 159 KAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666555443211 12223444555555566666666666666666666777777788888888888888888
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 006937 323 YELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 401 (625)
Q Consensus 323 ~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 401 (625)
+++++..+|.+ ..++..++.++...|++++|+..++++++..|+... +..++.++...|++++|+..++++++..|++
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 88888777765 456677788888888888888888888887776644 3777888888888888888888888888877
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Q 006937 402 AEAYNNLGVLYRD--AGSISLAIDAYEQCLK 430 (625)
Q Consensus 402 ~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 430 (625)
......++..+.. .|+..+|+..+++.++
T Consensus 316 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 316 RGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 6555444433322 4467777766665553
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=7.4e-26 Score=208.17 Aligned_cols=377 Identities=17% Similarity=0.187 Sum_probs=218.9
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC-----cHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLE--KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-----NACAHT 120 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~ 120 (625)
-..++.+|..|....-+.+|+..|+-+++ ..|+......++|.++++..+|.+|+++|+-++..-|. ...++.
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 45677788888888888888888887765 35666677778888888888888888888888887764 245677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh--------------
Q 006937 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------------- 186 (625)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-------------- 186 (625)
++|..+.+.|+|+.|+..|+.+++..|+.... +++..+++..|+-++-.+.|.+.+.+
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~pn~~a~--------~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA--------LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhCccHHhh--------hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 77888888888888888888888888875543 33444555556666666666666544
Q ss_pred CCCC--------------------------------------------------------------HHHHHHHHHHHHHc
Q 006937 187 DPHY--------------------------------------------------------------APAYYNLGVVYSEL 204 (625)
Q Consensus 187 ~~~~--------------------------------------------------------------~~~~~~la~~~~~~ 204 (625)
+|++ .+.-.+.+..+.+.
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 1111 01112223334444
Q ss_pred CCHHHHHHHHHH-------------------------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 205 MQYDTALGCYEK-------------------------------------AALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (625)
Q Consensus 205 ~~~~~A~~~~~~-------------------------------------al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 247 (625)
|+++.|++.++- ++.++.-++.++.+.|.+.+..|++++|.+.
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHH
Confidence 455444444432 2223333334444444444444555555555
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006937 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (625)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 327 (625)
|++++..+..- ..+++++|..+...|+.++|+++|-+...+--++.++++.++.+|..+.+..+|++++.++.
T Consensus 513 ykeal~ndasc-------~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 513 YKEALNNDASC-------TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHcCchHH-------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 55554433221 23444555555555555555555555554444555555555555555555555555555555
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006937 328 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (625)
Q Consensus 328 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (625)
.+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+...+||..|....-+++|+.+|+++--+.|+.......
T Consensus 586 slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 586 SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 408 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 408 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
++.|+.+.|+|.+|.+.|+..-...|++.+..
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 55555555555555555555555555554443
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=9.4e-25 Score=220.28 Aligned_cols=302 Identities=16% Similarity=0.128 Sum_probs=228.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc----HHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTHC 122 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 122 (625)
.....+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 445567789999999999999999999999999999999999999999999999999999998854332 3567889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH-----HHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYNL 197 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~l 197 (625)
|.++...|++++|+..|+++++..|.+... +..++.++...|++++|++.++++++..|.+. ..+..+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGA-------LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHH-------HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 999999999999999999999887776554 66778888888999999999999988877642 345678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhh
Q 006937 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (625)
Q Consensus 198 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (625)
|.++...|++++|+..++++++..|+...++..+|.++...|++++|++.+++++...|.+.
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------------------ 248 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL------------------ 248 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH------------------
Confidence 88888899999999999999988888888888899999999999999998888887766432
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 278 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (625)
..++..++.++...|++++|+..++++++..|+... +..++.++...|++++|+..+
T Consensus 249 ----------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 249 ----------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHH
Confidence 122344455555666666666666666666655433 356666666666666666666
Q ss_pred HHHHccCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 006937 358 QMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIA 396 (625)
Q Consensus 358 ~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 396 (625)
+++++..|++......++..+.. .|+..+|+..+++.++
T Consensus 306 ~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 306 REQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 66666666655443333332221 3455566555555443
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.4e-24 Score=199.74 Aligned_cols=369 Identities=19% Similarity=0.189 Sum_probs=304.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN-----VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
.-...|++++++.+|.+|+++|+-++..-|.- ..++.++|..+.+.|.|+.|+..|+.+.+..|+... -+++..
T Consensus 239 lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i 317 (840)
T KOG2003|consen 239 LKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLII 317 (840)
T ss_pred eeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhh
Confidence 34567888999999999999999999987752 457788999999999999999999999999997654 456778
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC--------------CCCHHHHHHH-------------HH-------------------
Q 006937 125 LYKDEGRLVEAAESYHKALSAD--------------PSYKPAAECL-------------AI------------------- 158 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~~-------------a~------------------- 158 (625)
|++..|+-++-.+.|.+.+.+- |++.-....+ +.
T Consensus 318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 8889999999999999988641 1110000000 00
Q ss_pred -----------------------HHHHhHHHHHHhCChHHHHHHHHHH--------------------------------
Q 006937 159 -----------------------VLTDLGTSLKLAGNTQDGIQKYYEA-------------------------------- 183 (625)
Q Consensus 159 -----------------------~~~~l~~~~~~~~~~~~A~~~~~~~-------------------------------- 183 (625)
+-.+.+..+.+.|+++.|++.+.-.
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 0112344567778888887776432
Q ss_pred -----HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 006937 184 -----LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (625)
Q Consensus 184 -----l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (625)
+..+.-++.++.+.|.+.+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+.-.+--++
T Consensus 478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 222333466667777788888999999999999999999999999999999999999999999999876554444
Q ss_pred HHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 006937 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 338 (625)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 338 (625)
+.++..++.+|....+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+..-
T Consensus 558 -------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie 630 (840)
T KOG2003|consen 558 -------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE 630 (840)
T ss_pred -------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence 4566667777777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006937 339 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (625)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (625)
.||..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|.+|.+.|+..-...|++.+.+..|.++.-.+|-.
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888753
Q ss_pred HHHHHHHHH
Q 006937 419 SLAIDAYEQ 427 (625)
Q Consensus 419 ~~A~~~~~~ 427 (625)
+|.++-.+
T Consensus 711 -d~key~~k 718 (840)
T KOG2003|consen 711 -DAKEYADK 718 (840)
T ss_pred -hHHHHHHH
Confidence 34444333
No 34
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.95 E-value=3.3e-24 Score=190.60 Aligned_cols=328 Identities=16% Similarity=0.168 Sum_probs=238.8
Q ss_pred CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
+|.+++-.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|+..|+-..|+..+.+++++.|+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A----- 108 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA----- 108 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-----
Confidence 556778899999999999999999999999999999999999999999999999999999999999999997766
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH---HH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006937 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PA------------YYNLGVVYSELMQYDTALGCYEKAALERP 222 (625)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~------------~~~la~~~~~~~~~~~A~~~~~~al~~~~ 222 (625)
....|.++.++|.+++|..-|..+++.+|++. ++ +......+...|+...|++.....+++.|
T Consensus 109 --RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 109 --RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred --HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 56678888999999999999999999999642 22 23334456667999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHH
Q 006937 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 302 (625)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 302 (625)
-++..+...+.+|...|+...|+.-++.+-++..++.+..+.++..++.+ |+.+.++...++.++++|++...
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v-------gd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV-------GDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh-------hhHHHHHHHHHHHHccCcchhhH
Confidence 99999999999999999999999999999999999988888888877776 48899999999999999987654
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH----HHHHHHHHH
Q 006937 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVY 378 (625)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~ 378 (625)
+-..- +..+..+.+...+ .....++|.++++..++.++.+|..+. ....+..|+
T Consensus 260 f~~YK----klkKv~K~les~e------------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 260 FPFYK----KLKKVVKSLESAE------------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHH----HHHHHHHHHHHHH------------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 32211 1111111111111 112234455555555555555544222 223344444
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
...|++.+|+..+.++++.+|++.+++...+.+|.....|+.|+..|++|.+.+|++..+...
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 455555555555555555555555555555555555555555555555555555555444433
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=6.2e-23 Score=216.52 Aligned_cols=374 Identities=13% Similarity=0.012 Sum_probs=304.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 006937 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (625)
..++..+...|+.++|+..+++++...|.....+..+|.++...|++++|++.|+++++.+|+++.++..++.++...++
T Consensus 72 ~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 72 DDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 36778888889999999999999944444555555568899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006937 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (625)
Q Consensus 132 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 211 (625)
.++|++.++++...+|..... ..++.++...++..+|++.++++++.+|++..++..+..++...|-...|.
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~--------l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNY--------MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HHHHHHHHHHhcccCcchHHH--------HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 999999999999999984432 223444444677777999999999999999998888877777766654444
Q ss_pred HHH------------------------------------------------HHHHHh---CCCC----HHHHHHHHHHHH
Q 006937 212 GCY------------------------------------------------EKAALE---RPMY----AEAYCNMGVIYK 236 (625)
Q Consensus 212 ~~~------------------------------------------------~~al~~---~~~~----~~~~~~la~~~~ 236 (625)
+.. ++.+.. .|.. ..+..-.-.++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 433 333332 2221 123334445677
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHH
Q 006937 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW------HYADAMYNLGVAY 310 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~ 310 (625)
..|++.+++..|+.+......-+ ..+....|..|...++.++|+.+|++++...+ ........|...+
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P------~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMP------DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCC------HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 78999999999998875442212 11233455556667899999999999987653 2334457888999
Q ss_pred HhcCCHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 006937 311 GEMLKFDMAIVFYELAFHFNP---------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 375 (625)
Q Consensus 311 ~~~~~~~~A~~~~~~al~~~~---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 375 (625)
...+++++|..++++..+..| +..+....++.++...|++.+|++.+++.+...|.+..++..+|
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999998544 33677888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
.++...|.+.+|+..++.+..++|++..+...+|.++..+|++.+|.....++++..|+++...
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999998654
No 36
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=3.7e-23 Score=203.20 Aligned_cols=391 Identities=15% Similarity=0.136 Sum_probs=320.2
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCG 123 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 123 (625)
.++..+-.+...+...|+|+.+.+.|++++...-...+.|+.++.++...|.-..|+...+..+... |.++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3455555677788889999999999999998877788999999999999999999999999999988 77777776666
Q ss_pred HHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh-----------CChHHHHHHHHHHHhhCCCCH
Q 006937 124 ILY-KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYA 191 (625)
Q Consensus 124 ~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~-----------~~~~~A~~~~~~~l~~~~~~~ 191 (625)
.++ .+.+.+++++.+..+++.... .......+..+..+|.+|..+ ....++++.++++++.+|.++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~--~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLG--GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 554 567999999999999998542 222233455566666665432 235789999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 006937 192 PAYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (625)
Q Consensus 192 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (625)
.+.+.++.-|..+++.+.|+...+++++. ..+++.+|..++.++...+++.+|+...+.++...++|.........+-.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 99999999999999999999999999999 55679999999999999999999999999999988875322221111111
Q ss_pred Hh------------------------------------chhhhhcCCHHHHHHHHHHHHhh--------C-----C----
Q 006937 271 DL------------------------------------GTKVKLEGDINQGVAYYKKALYY--------N-----W---- 297 (625)
Q Consensus 271 ~l------------------------------------~~~~~~~~~~~~A~~~~~~~l~~--------~-----~---- 297 (625)
.+ +.......+..+|.+.++++... . |
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 10 11111222334444444433321 0 1
Q ss_pred ----CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 006937 298 ----HY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 368 (625)
Q Consensus 298 ----~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 368 (625)
.. ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|+..+|.+.|..++.++|+++
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 11 235778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 369 QSLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
.+...+|.++.+.|+..-|.. .+..+++++|.+.++|+.+|.++.++|+.++|.++|..++++.+.+|.-
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 999999999999999888888 9999999999999999999999999999999999999999999988743
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-23 Score=198.16 Aligned_cols=403 Identities=17% Similarity=0.144 Sum_probs=315.7
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
.+.+....+-+-+..+.+|.-|+-+-+++..+. .++.-.+.+|++++..|++..|......- ++...+....+..+.+
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKC 91 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHH
Confidence 456677777778899999999999999998877 78888899999999999999998877654 6667788889999999
Q ss_pred HHHcCCHHHHHHHHHHH------HhcCCCC---------HH---HHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC
Q 006937 126 YKDEGRLVEAAESYHKA------LSADPSY---------KP---AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~a------l~~~~~~---------~~---~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 187 (625)
+....++++|...+... +...+.+ .. .....+.+++..|.+|....+.++|...|.+++..+
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 99999999999988733 1111211 11 112234456667888888899999999998887765
Q ss_pred CCCHHH---------------------------------------------------------------------HHHHH
Q 006937 188 PHYAPA---------------------------------------------------------------------YYNLG 198 (625)
Q Consensus 188 ~~~~~~---------------------------------------------------------------------~~~la 198 (625)
+...++ ....+
T Consensus 172 ~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~a 251 (611)
T KOG1173|consen 172 AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKA 251 (611)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHH
Confidence 554332 33334
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh
Q 006937 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
..++..+++.+..+..+..++.+|-+...+-....++...|+..+-...-.+.++..|+.+..|+..+..|..
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~------- 324 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM------- 324 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHH-------
Confidence 4445555555555555555555555544443333355555555555555555555566655555555544444
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
.+++.+|..+|.++..++|....+|...|..+...+..++|+..|..|-++.|........+|.-|...++++-|.++|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP----T---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 359 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
+|+.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+ + ....+.+||.++.+++++++|+.+|++++.+
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999995422 2 2456899999999999999999999999999
Q ss_pred CCCChhhhhhHHHHhhhccCCCchHHHH
Q 006937 432 DPDSRNAGQNRLLAMNYINEGHDDKLFE 459 (625)
Q Consensus 432 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (625)
.|.+..++.. ++..|...|+.+.+.+
T Consensus 485 ~~k~~~~~as--ig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 485 SPKDASTHAS--IGYIYHLLGNLDKAID 510 (611)
T ss_pred CCCchhHHHH--HHHHHHHhcChHHHHH
Confidence 9999998877 4555666666655544
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.94 E-value=6.3e-22 Score=190.37 Aligned_cols=380 Identities=13% Similarity=0.052 Sum_probs=316.0
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC---------------------------
Q 006937 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------------------------- 112 (625)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------- 112 (625)
+..-|+.|...++++-+.-|.+..+|..-+..-...|+.+.-.+++.+.+..-
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 44568888888888888888888888888888888887777666666655320
Q ss_pred ---------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHH
Q 006937 113 ---------------PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI 177 (625)
Q Consensus 113 ---------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~ 177 (625)
.+....|..-+..+.+.+-++-|...|..+++.+|..... |...+..-..-|..++-.
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl-------Wlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL-------WLRAAMFEKSHGTRESLE 570 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH-------HHHHHHHHHhcCcHHHHH
Confidence 1112345555667777777888888888888888887665 444444445567888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 178 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (625)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 257 (625)
.++++++..-|.....|...+..+...|+...|...+.++++.+|++.++|+....+.....+++.|..+|.++....|.
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 88899998889888888888888999999999999999999999998888888888888889999999999998887765
Q ss_pred cHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 006937 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337 (625)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 337 (625)
. .+++.-..+...+++.++|+.+++++++.+|.....|..+|.++.++++.+.|...|...++..|..+..|
T Consensus 651 e--------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLW 722 (913)
T KOG0495|consen 651 E--------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLW 722 (913)
T ss_pred c--------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHH
Confidence 3 34444445555578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------------
Q 006937 338 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---------------- 401 (625)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 401 (625)
..++.+-.+.|+.-+|...++++.-.+|++...|.....+-.+.|+.++|...+.++++..|.+
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999887753
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchH
Q 006937 402 --------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456 (625)
Q Consensus 402 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 456 (625)
+.++...|.++....++++|.++|.++++.+|++.++|..++ .-++..|..++
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy--kfel~hG~eed 869 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY--KFELRHGTEED 869 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH--HHHHHhCCHHH
Confidence 456778899999999999999999999999999999987743 23344554433
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.94 E-value=2.8e-22 Score=192.73 Aligned_cols=375 Identities=14% Similarity=0.056 Sum_probs=338.6
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
-..|+.-|+.+...+-++-|+.+|..+++..|.....|...+..-...|..++-..++++++...|.....|+..+..+.
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 207 (625)
..|+...|...+.++++.+|++.+. +...-.+.....+++.|..+|.++....|. ..+|+.-+.+...+++.
T Consensus 596 ~agdv~~ar~il~~af~~~pnseei-------wlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEI-------WLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNV 667 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHH-------HHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhH
Confidence 9999999999999999999998776 444455666778999999999999887665 67888889999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHH
Q 006937 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287 (625)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 287 (625)
++|+++++++++..|.....|..+|+++.++++.+.|...|...++..|.....|..++ .+....|+.-.|..
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa-------kleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA-------KLEEKDGQLVRARS 740 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH-------HHHHHhcchhhHHH
Confidence 99999999999999999999999999999999999999999999999999887665544 44455679999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 006937 288 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (625)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 367 (625)
.++++.-.+|++...|.....+-.+.|+.+.|.....++++..|++...|..-..+.-.-++-.+++..++ ....+
T Consensus 741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk----kce~d 816 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK----KCEHD 816 (913)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH----hccCC
Confidence 99999999999999999999999999999999999999999999999988887777666666555555444 45678
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
+.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.-++-.+.|.++....|.+...|..
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999998877765
No 40
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-22 Score=184.42 Aligned_cols=397 Identities=14% Similarity=0.094 Sum_probs=325.2
Q ss_pred CCCCCCCccccccccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q 006937 30 PGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109 (625)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (625)
++.+.......+...+.+.+.....+.++...++-+.|+..+.++.... ..+.....++..+-.-++-.++.-.+...+
T Consensus 79 ~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevv 157 (564)
T KOG1174|consen 79 HKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVI 157 (564)
T ss_pred ccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHH
Confidence 3333333444455566788999999999999999999999877754432 234555555665555554444444444333
Q ss_pred hc-------------------------------CCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 006937 110 KL-------------------------------DPQNACAH---THCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (625)
Q Consensus 110 ~~-------------------------------~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (625)
.. .|..+..+ ..++.++....-+..+..++-.-....|++...
T Consensus 158 recp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL--- 234 (564)
T KOG1174|consen 158 RECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL--- 234 (564)
T ss_pred HhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHH---
Confidence 32 22222222 233455544555556666666667777888765
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006937 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (625)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (625)
+..+|.+++..|++.+|+..|+++..++|......-..|.++...|++++-..+....+........-|+.-+...
T Consensus 235 ----l~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 235 ----MMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred ----HHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 7788999999999999999999999999999999999999999999999999999999998888888899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 006937 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (625)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 315 (625)
+..++++.|+.+-+++++.+|++...+...+.++.. .++.++|+-.|+.+..+.|...+.|..+..+|...|+
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-------~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA-------LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh-------ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 999999999999999999999988766655555555 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 316 FDMAIVFYELAFHFNPHCAEACNNLG-VIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (625)
Q Consensus 316 ~~~A~~~~~~al~~~~~~~~~~~~la-~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 393 (625)
+.+|...-+.+++..|.++..+..+| .++. .-.--++|.++++++++++|....+-..++.++...|.+++++..+++
T Consensus 384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99999999999999999999999997 4443 344568999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 394 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 394 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
.+...|+ ...+..||.++...+.+++|.++|..|+.++|++..+..++
T Consensus 464 ~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 464 HLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 9999887 66889999999999999999999999999999998776654
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=4.2e-22 Score=199.25 Aligned_cols=337 Identities=15% Similarity=0.130 Sum_probs=275.2
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006937 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (625)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 161 (625)
...++..|..++..|++++|...+.++++.+|.++.+|..+|.+|..+|+.+++...+-.|-.++|++.+. |.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~-------W~ 211 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL-------WK 211 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH-------HH
Confidence 45677788889999999999999999999999999999999999999999999999999999999999877 67
Q ss_pred HhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 006937 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYK 236 (625)
Q Consensus 162 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~ 236 (625)
.++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|+..|.+++...|.. .......+..+.
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 777788888999999999999999999999999999999999999999999999999999832 233445577888
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--cHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh--CCC--------------
Q 006937 237 NRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY--NWH-------------- 298 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~-------------- 298 (625)
..++-+.|++.++.++....+ ..+....++. ++.....++.+.......... .++
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ae-------l~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAE-------LFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHH-------HHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 888889999999999883222 1222223333 333355677776665554430 000
Q ss_pred ------------CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006937 299 ------------YADA-MYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (625)
Q Consensus 299 ------------~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (625)
+..+ ...++.+..+.++..+++..+..--...+ +.+..+..++..+...|++.+|+.+|..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1122 45555555666666666655544333334 458899999999999999999999999999876
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 365 PN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 365 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
+. +..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++..+|+.++|.+.+++...-+
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 54 467999999999999999999999999999999999999999999999999999999999887434
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-22 Score=191.40 Aligned_cols=363 Identities=19% Similarity=0.180 Sum_probs=297.1
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (625)
-.+-+...++...|+|++|++--.+.++++|..+..|..+|..+..+|+|++|+..|.+.|+.+|++...+..++.++..
T Consensus 37 vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~ 116 (539)
T KOG0548|consen 37 VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLE 116 (539)
T ss_pred chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhH
Confidence 34456777899999999999999999999999999999999999999999999999999999999999988888877632
Q ss_pred cC---------------------CHHHHHHHHHHHH---hcCCCCHHH--------------------------------
Q 006937 129 EG---------------------RLVEAAESYHKAL---SADPSYKPA-------------------------------- 152 (625)
Q Consensus 129 ~g---------------------~~~~A~~~~~~al---~~~~~~~~~-------------------------------- 152 (625)
.. ++-..-..|.+.+ ..+|.+...
T Consensus 117 ~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~ 196 (539)
T KOG0548|consen 117 DYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILAS 196 (539)
T ss_pred HHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCC
Confidence 20 0000111121111 111111000
Q ss_pred -----------------------HHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 006937 153 -----------------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (625)
Q Consensus 153 -----------------------~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~ 209 (625)
....+.-...+|...+...++..|++.|..++.++ .+...+.+.+.+|+..|.+.+
T Consensus 197 ~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~ 275 (539)
T KOG0548|consen 197 MAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAE 275 (539)
T ss_pred CCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHH
Confidence 11123335568999999999999999999999999 889999999999999999999
Q ss_pred HHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCH
Q 006937 210 ALGCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 282 (625)
Q Consensus 210 A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (625)
++....++++..... ..+...+|..+...++++.|+.+|.+++..... ..+.......
T Consensus 276 c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt---------------~~~ls~lk~~ 340 (539)
T KOG0548|consen 276 CIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT---------------PDLLSKLKEA 340 (539)
T ss_pred hhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---------------HHHHHHHHHH
Confidence 999999988765442 233444677888889999999999998876544 1222224577
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006937 283 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (625)
Q Consensus 283 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (625)
++++...+...-.+|.-...-...|..++..|+|..|+..|.+++..+|+++..|.+.|.+|.++|.+..|+...+++++
T Consensus 341 Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 341 EKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888888888888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 363 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
++|+....|...|.++..+.+|++|++.|+++++.+|++.++.-.+..|...+.......+.+++
T Consensus 421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998875444444555555
No 43
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.91 E-value=1.1e-21 Score=197.02 Aligned_cols=362 Identities=20% Similarity=0.210 Sum_probs=267.8
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESY 139 (625)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 139 (625)
.+++...|+..|-+++.++|.-+.++..+|..|....+...|..+|.++.++++.+..+....+..|....+++.|....
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 140 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (625)
Q Consensus 140 ~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 219 (625)
-.+-+..|..... ..+...|..+...++..+|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..
T Consensus 550 l~~~qka~a~~~k-----~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 550 LRAAQKAPAFACK-----ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHhhhchHHHHH-----hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 6665555543222 12556899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC---
Q 006937 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--- 296 (625)
Q Consensus 220 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--- 296 (625)
++|.+....+..+.+....|+|.+|+..+...+............++.++.+++..+...|-..+|..+++++++..
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888777888888888888877777777777766666665431
Q ss_pred -----CCCH--------------------------------------------------------------HHHHHHHHH
Q 006937 297 -----WHYA--------------------------------------------------------------DAMYNLGVA 309 (625)
Q Consensus 297 -----~~~~--------------------------------------------------------------~~~~~la~~ 309 (625)
-++. ..|+++|..
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 0111 123344443
Q ss_pred HHh--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHc
Q 006937 310 YGE--------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 381 (625)
Q Consensus 310 ~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 381 (625)
|.. +.+...|+.++.+++++..++...|+.||.+ ...|++.-|..+|-+++..+|.....|.++|.++.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 332 1122345555555555555555555555544 3334555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 382 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
.+++.|...|.++..++|.+...|...+.+....|+.-++...|..
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555554
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.91 E-value=1.1e-20 Score=189.37 Aligned_cols=302 Identities=12% Similarity=0.005 Sum_probs=238.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH-HHHHHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-PAYYNL 197 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~l 197 (625)
....|.+....|+++.|.+.+.++.+..|+.... +...|.+....|+++.|..++.++.+..|++. .+....
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~-------~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLN-------LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 3555677778888888888888888877765443 45567777788888888888888888888764 466667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhh
Q 006937 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (625)
Q Consensus 198 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (625)
+.++...|++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....++.....+.. ....+ ..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~~~--~l 236 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-KAEIG--LL 236 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHH--HH
Confidence 8888899999999999999999999999999999999999999999999988888775444332211111 11111 11
Q ss_pred hcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHH
Q 006937 278 LEGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC--NNLGVIYKDRDNLD 351 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~~~~~ 351 (625)
..+..+++.+.+.++....| +++..+..++..+...|++++|.+.++++++..|++.... ..........++.+
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChH
Confidence 12333445556777777666 5899999999999999999999999999999999987532 33333444568899
Q ss_pred HHHHHHHHHHccCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 352 KAVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 352 ~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
.+++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ ++++..|+... +..+|.++.++|+.++|.++|++
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999 899999999999999999999999 67788888655 55999999999999999999999
Q ss_pred HHhc
Q 006937 428 CLKI 431 (625)
Q Consensus 428 al~~ 431 (625)
++..
T Consensus 396 ~l~~ 399 (409)
T TIGR00540 396 SLGL 399 (409)
T ss_pred HHHH
Confidence 8764
No 45
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.90 E-value=1.2e-18 Score=189.49 Aligned_cols=366 Identities=14% Similarity=0.067 Sum_probs=254.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+...++..-..+.+.|++++|+++|+++.+.+. .+...+..+...+...|..++|...++.... | +...+..+-.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~ 445 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMS 445 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHH
Confidence 455666777778899999999999999887653 2333344455556677888888887776543 3 4566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSE 203 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~ 203 (625)
.+...|++++|...|+++.+....... .++..+...+.+.|+.++|.++|+++.+.... +...|..+...|.+
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~------~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADC------KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 778888888888888887765433211 12556666777778888888888887765432 57777778888888
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHhhHHHHHHHhchhhhh
Q 006937 204 LMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 204 ~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
.|++++|++.|+++.+..- -+..+|..+...+.+.|++++|.+.|.++... .|+. . .|..+...+.+
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-v-------TynaLI~ay~k 591 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-I-------TVGALMKACAN 591 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-H-------HHHHHHHHHHH
Confidence 8888888888887765431 23667777888888888888888888877642 3432 1 23333344455
Q ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVEC 356 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (625)
.|++++|.++|+++.+.. +.+...|..+...|.+.|++++|+.+|+++.+.. ..+...|..+...+.+.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 677788888887777665 3456677777777777888888888877777652 22356777777777777777777777
Q ss_pred HHHHHccC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 357 YQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 357 ~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
++++.+.. +.+...+..+...|.+.|++++|.+.|++..+. .| +...|..+...|.+.|++++|.+.|++..+
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777653 334567777777777777777777777776553 33 356677777777777777777777777654
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.90 E-value=2.5e-20 Score=186.78 Aligned_cols=302 Identities=12% Similarity=0.009 Sum_probs=189.6
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILY 126 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 126 (625)
+...+..|...+..|+++.|.+.+.++.+..|+....+...|.++..+|++++|..++.++.+..|++. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 445566777777778888888888777777777777777777777777888888888877777777664 4555567777
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH----HHHHHHH
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY----NLGVVYS 202 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~----~la~~~~ 202 (625)
...|++++|...++++++..|+++.+ +..++.++...|++++|++.+.+..+....++.... ....-..
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~-------l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEV-------LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 77788888888888877777777765 556666677777787777777777766444333221 1111223
Q ss_pred HcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh
Q 006937 203 ELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 203 ~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
..+..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++......
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-------------- 302 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-------------- 302 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH--------------
Confidence 33444445556666666666 467777777777777777777777777777777765421100
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--EACNNLGVIYKDRDNLDKAVEC 356 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~ 356 (625)
..........++.+.+++.++++++..|+++ ..+..+|.++.+.|++++|.++
T Consensus 303 -------------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 303 -------------------------LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred -------------------------HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 0111111222334445555555555555555 5555556666666666666666
Q ss_pred HH--HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 357 YQ--MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 357 ~~--~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (625)
|+ .+++..|+... +..+|.++.+.|+.++|.+++++++.
T Consensus 358 le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 358 FKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66 34445554433 33556666666666666666665544
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.90 E-value=1.5e-23 Score=200.05 Aligned_cols=262 Identities=21% Similarity=0.197 Sum_probs=122.4
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 006937 161 TDLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (625)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 238 (625)
..++.++...|++++|++++.+.+.. .|+++..|..+|.+....+++++|+..|++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 35688888999999999999765544 488999999999999999999999999999999999988888888888 799
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCCH
Q 006937 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKF 316 (625)
Q Consensus 239 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~ 316 (625)
+++++|+.+++++.+..++ +..+. ....++...++++++...++++.... +.++..+..+|.++.+.|+.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~-~~~l~-------~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGD-PRYLL-------SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccccccc-cchhh-------HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999998876654 22222 23334455789999999999977654 67888999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 317 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 317 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (625)
++|+..|+++++.+|++..+...++.++...|+++++...++...+..|+++..+..+|.++..+|++++|+.+|+++++
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 397 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 397 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
.+|+++.++..+|.++...|+.++|..+++++++.
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999998764
No 48
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.90 E-value=2.3e-19 Score=173.29 Aligned_cols=251 Identities=18% Similarity=0.168 Sum_probs=206.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
....++..+..++..++|...++..+.+++..|++.+.+...|..+..+|+.++|......+++.++.+...|..+|.++
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
....+|++|+++|+.|+...|++... +..++....+.++++.....-.+.++..|.....|...+..+...|+
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qi-------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQI-------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876 77777777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh
Q 006937 207 YDTALGCYEKAALER---PMY-----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 207 ~~~A~~~~~~al~~~---~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
+..|...++...+.. |.. .+.......+..+.|.+++|++.+..--...-+.. ......+.++..
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkl-------a~~e~ka~l~~k 231 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKL-------AFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHH-------HHhhhHHHHHHH
Confidence 999999888876654 321 23444556666777777777776654322111111 122233455555
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 311 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 311 (625)
.+++++|...|...+..+|++...+..+-.++.
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 678888888888888888888776666555554
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.5e-20 Score=166.34 Aligned_cols=382 Identities=18% Similarity=0.153 Sum_probs=293.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhc--------CHHHHHHHHHH-HHhcC--CCc----
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN--------MGRLAFDSFSE-AVKLD--PQN---- 115 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~-al~~~--p~~---- 115 (625)
-+-+|..+++...|+...+++...++..|++..+|.....++...- +-.+|...++. .+... |..
T Consensus 7 ~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~ 86 (478)
T KOG1129|consen 7 DYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKT 86 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccC
Confidence 4567889999999999999999999999999999999888875432 22245544432 11111 100
Q ss_pred --------------------HHHHHHHHHH-HHHcCCHHHHHHH--------------------------------HHHH
Q 006937 116 --------------------ACAHTHCGIL-YKDEGRLVEAAES--------------------------------YHKA 142 (625)
Q Consensus 116 --------------------~~~~~~la~~-~~~~g~~~~A~~~--------------------------------~~~a 142 (625)
+.+....... -.+-|-.++|+.. |-.+
T Consensus 87 p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~nl 166 (478)
T KOG1129|consen 87 PFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYNL 166 (478)
T ss_pred CCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceeeh
Confidence 0000000000 0111222222111 1111
Q ss_pred HhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHHcCCHHHHHH
Q 006937 143 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PH-------YAPAYYNLGVVYSELMQYDTALG 212 (625)
Q Consensus 143 l~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~-------~~~~~~~la~~~~~~~~~~~A~~ 212 (625)
-.++|........+...++. .+++..++...|-......++.+ |. +......+|.||+.+|-+.+|.+
T Consensus 167 sRLN~tkYa~~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aek 244 (478)
T KOG1129|consen 167 SRLNPTKYAERPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEK 244 (478)
T ss_pred hhcCchhhccChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHH
Confidence 22233222222222333332 24555677777776666555442 11 23344679999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHH
Q 006937 213 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (625)
Q Consensus 213 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 292 (625)
.++..++..|. ++.+..++.+|.+..+...|+..+.+.++..|.+.......+. ++...++.++|.++|+.+
T Consensus 245 qlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~AR-------i~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 245 QLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQAR-------IHEAMEQQEDALQLYKLV 316 (478)
T ss_pred HHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHH-------HHHHHHhHHHHHHHHHHH
Confidence 99999998875 8899999999999999999999999999999998765555444 445567999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---CCHH
Q 006937 293 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQ 369 (625)
Q Consensus 293 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~ 369 (625)
++.+|.+.++...+|.-|+..++.+-|+.+|++.+++.-.+++.+.++|.+++..++++-++..|++++.... ...+
T Consensus 317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaD 396 (478)
T KOG1129|consen 317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAAD 396 (478)
T ss_pred HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998743 2367
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
+|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++..+-...|+-.+...|+
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999988887774
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.90 E-value=9.3e-20 Score=181.60 Aligned_cols=303 Identities=11% Similarity=0.002 Sum_probs=237.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH-HHHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-YYNL 197 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~l 197 (625)
.+..|......|++++|.+...+.-+..+. +.. .+...+......|+++.|..++.++.+.+|+.... ....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l------~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVV------NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345566677789999888777765554322 222 13344556678899999999999998888887533 3445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh-HHHHHHHhchhh
Q 006937 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN-MAIALTDLGTKV 276 (625)
Q Consensus 198 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~l~~~~ 276 (625)
+.++...|++++|+..++++.+..|+++.++..++.+|...|++++|+..+.+..+....++..... ...++..+....
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999998888888777665443221 112322222222
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (625)
Q Consensus 277 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (625)
....+.+...+.++......|+++.+...++..+...|+.++|...++++++. +.++......+.+ ..++.+++++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 22334555566666665667889999999999999999999999999999994 5556555555554 44999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
+++.++.+|+++..+..+|.++...|++++|.++|+++++..|++. .+..++.++.++|+.++|.++|++++.+.
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999954 46689999999999999999999998865
No 51
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1e-19 Score=166.17 Aligned_cols=309 Identities=15% Similarity=0.109 Sum_probs=269.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 006937 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (625)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~ 167 (625)
+|.++...+-+.-+..++-.-...-|+|...+..+|.+++..|++++|+..|+++..++|..... .-..|..+
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~-------MD~Ya~LL 276 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA-------MDLYAVLL 276 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh-------HHHHHHHH
Confidence 45555555555666666677777889999999999999999999999999999999999998776 44456667
Q ss_pred HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (625)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 247 (625)
...|++++-.......+..+.....-|+--+...+..+++..|+.+-+++++.+|.+..++...|.++...++.++|+-.
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence 77899999999888888888778888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHH
Q 006937 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG-VAYG-EMLKFDMAIVFYEL 325 (625)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la-~~~~-~~~~~~~A~~~~~~ 325 (625)
|+.+..+.|.....+..+..+ |...+++.+|.-..+.++...|.++.++..+| .++. .-.--++|.+.+++
T Consensus 357 FR~Aq~Lap~rL~~Y~GL~hs-------YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 357 FRTAQMLAPYRLEIYRGLFHS-------YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHhcchhhHHHHHHHHHH-------HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 999999999876655554444 44578999999999999999999999999886 4443 34457899999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 006937 326 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (625)
Q Consensus 326 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (625)
++.+.|....+-..+|.++...|.++.++..+++.+...|+. ..+..+|.++...+.+.+|+++|..++.++|++..+.
T Consensus 430 ~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 430 SLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred hhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 999999999999999999999999999999999999988764 6788999999999999999999999999999988777
Q ss_pred HHHHHH
Q 006937 406 NNLGVL 411 (625)
Q Consensus 406 ~~la~~ 411 (625)
..+-.+
T Consensus 509 ~Gl~~l 514 (564)
T KOG1174|consen 509 RGLRLL 514 (564)
T ss_pred HHHHHH
Confidence 665444
No 52
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.89 E-value=9.8e-20 Score=179.37 Aligned_cols=349 Identities=16% Similarity=0.100 Sum_probs=294.3
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCHHHHHhHH-HHHHHhcCHHHHHHHHHHHHhcCC-----CcHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKD--SGNVEAHIGKG-ICLQMQNMGRLAFDSFSEAVKLDP-----QNACA 118 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~ 118 (625)
..+.|..++..+...|.-..|+.+++..+... |+++..+...+ .|....+.+++++.+..+++.... -.+..
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 46778999999999999999999999999988 77776655554 456678999999999999998432 23567
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh-
Q 006937 119 HTHCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI- 186 (625)
Q Consensus 119 ~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~- 186 (625)
+..+|.+|..+- ...+++..++++++.+|.++.+ .+.++.-|..+++.+.|+....++++.
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~-------if~lalq~A~~R~l~sAl~~~~eaL~l~ 508 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV-------IFYLALQYAEQRQLTSALDYAREALALN 508 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 788887776432 3568899999999999999876 777888888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------
Q 006937 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP---------- 256 (625)
Q Consensus 187 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------- 256 (625)
..+++.+|..++.++...+++.+|+...+.++...|+|.........+-...++.++|+..+...+....
T Consensus 509 ~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 509 RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 5568999999999999999999999999999999888766666556666666666666665554443311
Q ss_pred ----------------------------------------------------CcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 257 ----------------------------------------------------NFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 257 ----------------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
.....+...-..+...+..+...++.++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 1112233334445566677778889999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHc
Q 006937 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALS 362 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~ 362 (625)
|..++.++-.++|..+..|+..|.++...|+..+|.+.|..++.++|++......+|.++.+.|+..-|.. .+..+++
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888 9999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 006937 363 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (625)
Q Consensus 363 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (625)
++|.++++|+.+|.++..+|+.++|.++|..++++.+.+|
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999987765
No 53
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.89 E-value=7.6e-20 Score=197.10 Aligned_cols=400 Identities=14% Similarity=0.022 Sum_probs=314.6
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
.+...+..+...+...++++.|..++..+.+. .| +...+..+...|.+.|++++|.+.|++..+ .+...|..+.
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li 196 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTII 196 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHH
Confidence 45677778888888999999999999888764 34 567788888899999999999999988743 3566788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHH-----------------------------HHHHHHHHHHHhHHHHHHhCChH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKP-----------------------------AAECLAIVLTDLGTSLKLAGNTQ 174 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------~~~~~a~~~~~l~~~~~~~~~~~ 174 (625)
..|.+.|++++|+..|+++.+....... ....-..++..+...|.+.|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 8999999999999999988654321100 00001223666788889999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (625)
Q Consensus 175 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (625)
+|.+.|++.. +.+..+|..+...|.+.|++++|++.|++..+.. .-+..++..+...+.+.|++++|.+.+..+++
T Consensus 277 ~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 277 DARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999998763 4578899999999999999999999999987653 22467889999999999999999999999988
Q ss_pred cCC-CcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C
Q 006937 254 VSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-P 331 (625)
Q Consensus 254 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~ 331 (625)
... .+.. ++..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|+.++|++.|++..+.. .
T Consensus 354 ~g~~~d~~-------~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 354 TGFPLDIV-------ANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred hCCCCCee-------ehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 752 2222 344455566667899999999998754 356789999999999999999999999988753 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006937 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (625)
Q Consensus 332 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (625)
.+...+..+...+...|..++|.++|+...+..+ .+...|..+..++.+.|++++|.+.+++. ...| +...|..+.
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll 501 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALL 501 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHH
Confidence 3577788888999999999999999999876432 23457888999999999999999998764 2334 367799999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHHHHHHH
Q 006937 410 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 466 (625)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (625)
..+...|+.+.|...+++.+++.|++...+.. +...|...|..+++.+..+....
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~--L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGMGPEKLNNYVV--LLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH--HHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999997766543 45567777877766665554443
No 54
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.89 E-value=8.3e-18 Score=182.93 Aligned_cols=360 Identities=13% Similarity=0.045 Sum_probs=298.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHH
Q 006937 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-QNACAHTHCGILYKDEGRLV 133 (625)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~ 133 (625)
...+...|..++|..+|+.... | +...+..+-.++...|++++|...|.++.+... .+...+..+...|.+.|+.+
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd 489 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence 3446678999999999987654 4 567788888889999999999999999988654 36778899999999999999
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 006937 134 EAAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTAL 211 (625)
Q Consensus 134 ~A~~~~~~al~~~~~-~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~ 211 (625)
+|.+.|+++.+.... +.. .|..+...|.+.|++++|++.|.++.+..- -+...|..+...|.+.|++++|.
T Consensus 490 ~A~~vf~eM~~~Gv~Pdvv-------TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEANVH-------TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999876432 233 277778888999999999999999876532 24788999999999999999999
Q ss_pred HHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHhhHHHHHHHhchhhhhcCCHHHHH
Q 006937 212 GCYEKAALE----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (625)
Q Consensus 212 ~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (625)
+.+.++... .|+ ...+..+...|.+.|++++|.+.|+++.+... .+... |..+...+.+.|++++|+
T Consensus 563 ~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t-------ynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 563 DVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV-------YTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred HHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH-------HHHHHHHHHhcCCHHHHH
Confidence 999999763 344 67888899999999999999999999988753 23333 344445555678999999
Q ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006937 287 AYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 364 (625)
Q Consensus 287 ~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 364 (625)
.+|++..+.. ..+..++..+...+.+.|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.|++..+..
T Consensus 635 ~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999998763 2246788999999999999999999999999874 4568899999999999999999999999986542
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006937 365 -PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (625)
Q Consensus 365 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (625)
..+...|..+...|.+.|++++|+++|++.... .|+ ...+..+...+.+.|++++|.+++.+..+...
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 234678999999999999999999999998765 344 66777888999999999999999999988643
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.89 E-value=1.3e-22 Score=193.48 Aligned_cols=263 Identities=20% Similarity=0.179 Sum_probs=83.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEK--DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
..+.+|..++..|++++|++++++.+.. .|+++..|..+|.+....+++++|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3446677777888888888877655443 367777777777777777778888888887777777777777777766 6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSELM 205 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~ 205 (625)
..+++++|+..++++.+..++ +.. +.....++...++++++...++++.... +.++..+..+|.++.+.|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~-~~~-------l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGD-PRY-------LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred ccccccccccccccccccccc-cch-------hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 777777777777777665433 222 3334455566677777777777765543 456667777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHH
Q 006937 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 285 (625)
Q Consensus 206 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 285 (625)
+.++|++.++++++.+|++..+...++.++...|+.+++...+....+..|+++
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-------------------------- 214 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-------------------------- 214 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC--------------------------
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH--------------------------
Confidence 777777777777777777777777777777777777776666666555544443
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006937 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (625)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (625)
..+..+|.++...|++++|+.+|+++++.+|+++..+..+|.++...|+.++|..+++++++
T Consensus 215 ---------------~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 215 ---------------DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp ---------------CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ---------------HHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34444555555555555555555555555555555555555555555555555555555543
No 56
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.89 E-value=1.4e-18 Score=187.34 Aligned_cols=359 Identities=13% Similarity=0.041 Sum_probs=294.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHCGIL 125 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 125 (625)
.+......+...|++.+|+.+|+.+....+ -+...+..+..++...++.+.|...+..+.+. .| +...+..+...
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 567777888999999999999999876543 35677888888899999999999999988764 34 57788899999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC----------------
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------- 189 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---------------- 189 (625)
|.+.|++++|.+.|++..+ |+ .. .|..+...+.+.|++++|++.|+++.+....
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~~-~~-------t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--RN-LA-------SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--CC-ee-------eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 9999999999999998854 32 22 2777788888999999999999998765321
Q ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 190 --------------------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (625)
Q Consensus 190 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (625)
+..++..+...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..|+
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 23345667888999999999999998763 4567899999999999999999999999
Q ss_pred HHHhc--CCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006937 250 RCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELA 326 (625)
Q Consensus 250 ~al~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 326 (625)
+..+. .|+. . ++..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|+.++|...|++.
T Consensus 315 ~M~~~g~~pd~-~-------t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 315 EMRDSGVSIDQ-F-------TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHcCCCCCH-H-------HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 98764 3432 2 34445555566789999999999999876 556788999999999999999999999987
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHH
Q 006937 327 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYAE 403 (625)
Q Consensus 327 l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~ 403 (625)
.+ .+...|+.+...|.+.|+.++|++.|++..+.. .-+...+..+...+...|+.++|.++|+...+..+ .+..
T Consensus 387 ~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 387 PR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred CC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 54 357789999999999999999999999988653 22466788888999999999999999999986432 2356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
.|..+..+|.+.|+.++|.+.+++. ...|+
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~ 493 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA-PFKPT 493 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC-CCCCC
Confidence 7889999999999999999998864 23444
No 57
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.88 E-value=2.2e-20 Score=158.13 Aligned_cols=216 Identities=24% Similarity=0.240 Sum_probs=199.3
Q ss_pred ccccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHH
Q 006937 41 STLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (625)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (625)
.+......+..+.+|..|++.|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|+++++++|++.+++.
T Consensus 28 ~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 28 QTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhh
Confidence 34444567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (625)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (625)
+.|..++.+|++++|...|++++.. |..... +..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~----s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALAD-PAYGEP----SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhC-CCCCCc----chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 9999999999999999999999973 443332 44589999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 006937 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (625)
++..|+|-.|..++++.....+-..+.+.....+-...|+-+.+..+=.+.....|...+.
T Consensus 183 ~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 183 HYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999999999999998888888999999999999999999999988988999987643
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.88 E-value=5e-20 Score=191.64 Aligned_cols=187 Identities=16% Similarity=0.084 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhc---------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 006937 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQN---------MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (625)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (625)
+++|+.+|+++++.+|+++.++..+|.++...+ ++++|+..++++++++|+++.++..+|.++...|++++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 445555555555555555555555544443221 24445555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (625)
Q Consensus 135 A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 214 (625)
|+..|+++++++|++..+ +..+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+
T Consensus 357 A~~~~~~Al~l~P~~~~a-------~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 357 GSLLFKQANLLSPISADI-------KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 555555555555544443 3334444444455555555555555555544444434444444444555555555
Q ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 215 EKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (625)
Q Consensus 215 ~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 257 (625)
+++++.. |+++..+..+|.++...|++++|...+.++....|.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 5444442 344444444555555555555555554444444443
No 59
>PLN03077 Protein ECB2; Provisional
Probab=99.88 E-value=9.2e-19 Score=193.46 Aligned_cols=352 Identities=15% Similarity=0.065 Sum_probs=235.9
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHh
Q 006937 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDL 163 (625)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~l 163 (625)
..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|++.|+++.+.. |+... +..+
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--------~~~l 395 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--------IASV 395 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--------HHHH
Confidence 333444444444444444444432 1223344444445555555555555555443321 22211 2222
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 006937 164 GTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (625)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 242 (625)
-..+...|++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.+
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~ 472 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCF 472 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHH
Confidence 2233444555555555555554432 2345666777888888888888888877543 34567888888888888888
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHH----------------------------hchhhhhcCCHHHHHHHHHHHHh
Q 006937 243 SAIACYERCLAVSPNFEIAKNNMAIALTD----------------------------LGTKVKLEGDINQGVAYYKKALY 294 (625)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------------------------l~~~~~~~~~~~~A~~~~~~~l~ 294 (625)
+|+..|+++....+.+...+..+..++.. +-..|.+.|++++|...|+..
T Consensus 473 eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-- 550 (857)
T PLN03077 473 EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-- 550 (857)
T ss_pred HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--
Confidence 88888888875433333333322222222 225677789999999999886
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CCHHH
Q 006937 295 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQS 370 (625)
Q Consensus 295 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~ 370 (625)
+.+..+|..+...|...|+.++|++.|++..+. .|+ ...+..+-..+.+.|+.++|.++|+...+..+ .+...
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 567889999999999999999999999998875 344 55667777789999999999999999884432 23578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhcc
Q 006937 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450 (625)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 450 (625)
|..+..++.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.+....+++++++|++...+.. ++..|..
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l--l~n~ya~ 703 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL--LCNLYAD 703 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH--HHHHHHH
Confidence 999999999999999999999875 34555 6778888888889999999999999999999998766543 4455666
Q ss_pred CCCchHHHHH
Q 006937 451 EGHDDKLFEA 460 (625)
Q Consensus 451 ~~~~~~~~~~ 460 (625)
.|+.++..+.
T Consensus 704 ~g~~~~a~~v 713 (857)
T PLN03077 704 AGKWDEVARV 713 (857)
T ss_pred CCChHHHHHH
Confidence 6665554433
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.88 E-value=6.9e-20 Score=190.56 Aligned_cols=250 Identities=12% Similarity=-0.004 Sum_probs=144.7
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 006937 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (625)
Q Consensus 171 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 241 (625)
+++++|+..|+++++++|+++.++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3456777777777777777777777777766533 2366777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006937 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 321 (625)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~ 321 (625)
++|+..|+++++++|++...+..++.++.. .|++++|+..++++++.+|.++..+..++.++...|++++|+.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-------~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFM-------AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 777777777777776665444333333332 3455555555555555555555544444444555555555665
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 322 FYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 322 ~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
.+++++... |+++..+..+|.++...|++++|...+++.....|....+...++..|...|+ +|...+++.++....
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 555555543 44555555555555555666666655555555555555555555555555552 444444444443222
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
...-...+..+|.-.|+.+.+..+ +++.+
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 222222244555555555555444 44433
No 61
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.88 E-value=6.6e-19 Score=175.53 Aligned_cols=296 Identities=10% Similarity=-0.029 Sum_probs=144.1
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhH-HHHHHHhcCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-GICLQMQNMGRLAFDSFSEAVKLDPQNACA-HTHCGILY 126 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~ 126 (625)
...+..|...+..|+|++|.+.+.+.-+..+ ++..++.+ +......|+++.|..++.++.+..|++..+ ....+.++
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3344555555555666655555544433222 22222222 333355555666666665555555554322 22335555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH--------HHH
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY--------NLG 198 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~--------~la 198 (625)
...|++++|+..++++.+..|+++.+ +..++.++...|++++|++.+.+..+..+.++.... .+.
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~a-------l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEV-------LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 55556666655555555555555554 333444444555555555555555554433322111 111
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh
Q 006937 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
.......+-+...+.++..-+..|+++.+...++..+...|+.++|...++++++..+
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~---------------------- 294 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY---------------------- 294 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------------------
Confidence 1111122222223333333233344555555555555555555555555555555322
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
++......+.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|+
T Consensus 295 --------------------~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 295 --------------------DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred --------------------CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22222222222 22555555555555555555555555555555555566666666666
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 359 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 359 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
++++..|++.. +..++.++.+.|+.++|..+|++++.+
T Consensus 353 ~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 353 AALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66555555322 335555566666666666666655543
No 62
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=8.5e-21 Score=181.34 Aligned_cols=239 Identities=20% Similarity=0.256 Sum_probs=177.6
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006937 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (625)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 240 (625)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 34688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCHHH
Q 006937 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDM 318 (625)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~ 318 (625)
-.+|+.++.+-+...|........--.-.............+..-.++|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999888764311100000000000000111123344455555555555 566777777777777777777
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006937 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (625)
Q Consensus 319 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (625)
|+.+|+.++...|++...|+.||-.+....+..+|+..|.+|+++.|....++++||..+..+|.|++|.++|-.+|.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777664
Q ss_pred C
Q 006937 399 P 399 (625)
Q Consensus 399 p 399 (625)
+
T Consensus 529 ~ 529 (579)
T KOG1125|consen 529 R 529 (579)
T ss_pred h
Confidence 3
No 63
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.4e-21 Score=174.70 Aligned_cols=303 Identities=18% Similarity=0.180 Sum_probs=220.3
Q ss_pred ccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 006937 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (625)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (625)
.....++.....+..++...+|.+|+..+..+++..|+++..|...+.++...|++++|....++.++++|.........
T Consensus 44 ~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~ 123 (486)
T KOG0550|consen 44 EAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLRE 123 (486)
T ss_pred hHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccch
Confidence 33456788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC---CCCHHHHHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PHYAPAYYNLGV 199 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~ 199 (625)
++++...++..+|...++ +..+ + ....|+..+++.+..+ |....+....+.
T Consensus 124 ~~c~~a~~~~i~A~~~~~--------~~~~-------~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~ 177 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLK--------SKQA-------Y-----------KAANALPTLEKLAPSHSREPACFKAKLLKAE 177 (486)
T ss_pred hhhhhhhHHHHHHHHHhh--------hhhh-------h-----------HHhhhhhhhhcccccccCCchhhHHHHhhhh
Confidence 999999999999988887 1111 0 1223333444433332 444566677889
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhc
Q 006937 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 200 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (625)
|+...|++++|...--..+++++.+.++++..|.++...++.+.|+..|++++.++|+...... ++.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~----~~~--------- 244 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS----ASM--------- 244 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHh----Hhh---------
Confidence 9999999999999999999999999999999999999999999999999999999998653211 000
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
.|+....+..-| .-.++.|++.+|.++|..
T Consensus 245 ----------------~~k~le~~k~~g----------------------------------N~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 245 ----------------MPKKLEVKKERG----------------------------------NDAFKNGNYRKAYECYTE 274 (486)
T ss_pred ----------------hHHHHHHHHhhh----------------------------------hhHhhccchhHHHHHHHH
Confidence 111122233334 444444555555555555
Q ss_pred HHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 360 ALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 360 al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
++.++|++ ...|.+++.+..++|+..+|+...+.++++++....++...|.|+..++++++|++.|+++++...+
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 55555443 3355555666666666666666666666666666666666666666666666666666666655444
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=166.70 Aligned_cols=242 Identities=19% Similarity=0.168 Sum_probs=155.9
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhH
Q 006937 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164 (625)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~ 164 (625)
...+|.||+++|.+.+|.+.++..++..| .++.+..++.+|.+..+...|+..+...+...|.+... +..++
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~-------l~g~A 297 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTY-------LLGQA 297 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhh-------hhhhH
Confidence 34677777777777777777777777655 46667777777777777777777777777777776655 55566
Q ss_pred HHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006937 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (625)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 244 (625)
+++...+++++|+++|+.+++.+|.+.++.-.+|.-|+..++.+-|+.+|++.++..-.+++.+.++|.+++..++++-+
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 66666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006937 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (625)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (625)
+..|++++....+... .+.+++++|.+....|++..|..+|+-++..++++.+++.++|.+..+.|+.++|..+++
T Consensus 378 L~sf~RAlstat~~~~----aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQ----AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHHHHHhhccCcch----hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 7777777765443221 133344444444444444444444444444444444444444444444444444444444
Q ss_pred HHHhhCCCCHHHHH
Q 006937 325 LAFHFNPHCAEACN 338 (625)
Q Consensus 325 ~al~~~~~~~~~~~ 338 (625)
.+-...|+..+..+
T Consensus 454 ~A~s~~P~m~E~~~ 467 (478)
T KOG1129|consen 454 AAKSVMPDMAEVTT 467 (478)
T ss_pred HhhhhCcccccccc
Confidence 44444444333333
No 65
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1e-20 Score=180.76 Aligned_cols=266 Identities=21% Similarity=0.267 Sum_probs=217.8
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
+...-+..|..+++.|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|++..++..||..|
T Consensus 284 ~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 284 DHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred CCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHc
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSEL 204 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~ 204 (625)
...|.-.+|+.++.+.+...|........--.-.............+..-.+.|..+....| .+++++..||.+|...
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999999999999999988764321000000000000001111234455667777777777 6899999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
|+|++|+.+|+.|+...|++...|..||-.+....+.++|+..|++|+++.|....++++++..+.++ |.|++
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-------G~ykE 516 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-------GAYKE 516 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-------hhHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888888776 59999
Q ss_pred HHHHHHHHHhhCCCC----------HHHHHHHHHHHHhcCCHHHH
Q 006937 285 GVAYYKKALYYNWHY----------ADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 285 A~~~~~~~l~~~~~~----------~~~~~~la~~~~~~~~~~~A 319 (625)
|.++|-.++.+.+.. ..+|..|-.++...++.+.+
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 999999999876541 13455555555555555533
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.5e-17 Score=155.46 Aligned_cols=392 Identities=13% Similarity=0.037 Sum_probs=276.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
.+.++.--..+...|+|++|.....+++...|++..++...-.++.+.++|++|+...++-......+ ...+..+.|.+
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Y 90 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHH
Confidence 47788888999999999999999999999999999999999999999999999996555433222122 22368899999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC-------------------
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------------- 188 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------------------- 188 (625)
+.+..++|+..++ ..++.+... +...+.++++.|+|++|+..|+..++.+.
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~l-------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKL-------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred HcccHHHHHHHHh---cccccchHH-------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 9999999999998 334444333 45566777778999999999988754421
Q ss_pred -----------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHcCCH
Q 006937 189 -----------H-YAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PM-------YAEAYCNMGVIYKNRGDL 241 (625)
Q Consensus 189 -----------~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~-------~~~~~~~la~~~~~~g~~ 241 (625)
. +.+.+++.+.++...|+|.+|++.+++++++. .+ -..+...++.++..+|+.
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1 35678999999999999999999999995431 11 124667889999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHhhHHHHH------------------------------------------HHhchhhhhc
Q 006937 242 ESAIACYERCLAVSPNFEIAKNNMAIAL------------------------------------------TDLGTKVKLE 279 (625)
Q Consensus 242 ~~A~~~~~~al~~~~~~~~~~~~~~~~~------------------------------------------~~l~~~~~~~ 279 (625)
++|...|...+..++.+.........-+ .+.+.+....
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998876543211111100 1111111111
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
+..+.+.+.....-...|...-..........+...+.+|..++....+.+|.+ ..+...++.+...+|+++.|++.+.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 222222222222112222222222223333333447888999999999888887 7788889999999999999999999
Q ss_pred HHHcc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 359 MALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDA 424 (625)
Q Consensus 359 ~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (625)
..+.. ....+.+-..+-.++...++-+-|...+.+++.- .+.....+..++..-.+.|+-++|...
T Consensus 401 ~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred HHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 44321 1223445555566677777766676666666653 223334566677788888999999999
Q ss_pred HHHHHhcCCCChhhhhhHHHHhhhcc
Q 006937 425 YEQCLKIDPDSRNAGQNRLLAMNYIN 450 (625)
Q Consensus 425 ~~~al~~~p~~~~~~~~~~~~~~~~~ 450 (625)
+++.++.+|++.++...+..+++++.
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999888777653
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.85 E-value=7e-19 Score=167.73 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHcCC----CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 62 NKFVDALALYEIVLEKDS----GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (625)
Q Consensus 62 g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (625)
+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445555555555554222 1234455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 006937 138 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (625)
Q Consensus 138 ~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (625)
.|+++++++|++..+ +.++|.++...|++++|++.++++++.+|+++
T Consensus 120 ~~~~Al~l~P~~~~a-------~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 120 AFDSVLELDPTYNYA-------YLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 555555555554433 44444444444555555555555555444443
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.85 E-value=1.9e-18 Score=164.77 Aligned_cols=244 Identities=18% Similarity=0.133 Sum_probs=192.6
Q ss_pred HhcCHHHHHHHHHHHHhcCC---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHH
Q 006937 94 MQNMGRLAFDSFSEAVKLDP---Q-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169 (625)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~ 169 (625)
..+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|++..+ +..+|.++..
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-------~~~lg~~~~~ 110 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADA-------YNYLGIYLTQ 110 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH-------HHHHHHHHHH
Confidence 33577889999999996443 3 36789999999999999999999999999999998776 7888999999
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (625)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (625)
.|++++|+..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++.... ...+....+++++|+..+.
T Consensus 111 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLK 189 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999874222 2234456789999999998
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 006937 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (625)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 329 (625)
+.....+... + ..+.....++..... ..++.+.+.++...+..|...++|+.+|.++...|++++|+.+|+++++.
T Consensus 190 ~~~~~~~~~~--~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 190 QRYEKLDKEQ--W-GWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHhhCCccc--c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8765543222 1 123444445543221 12334444455556777788899999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHcCC
Q 006937 330 NP-HCAEACNNLGVIYKDRDN 349 (625)
Q Consensus 330 ~~-~~~~~~~~la~~~~~~~~ 349 (625)
+| +..+..+.+..+....++
T Consensus 266 ~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 266 NVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCchHHHHHHHHHHHHHHHhh
Confidence 96 666666666665555444
No 69
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.85 E-value=7.3e-19 Score=177.11 Aligned_cols=378 Identities=19% Similarity=0.227 Sum_probs=299.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHH--------------------------HHhcCHHHHHHH
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL--------------------------QMQNMGRLAFDS 104 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--------------------------~~~g~~~~A~~~ 104 (625)
....+.+......|.+|...+....... .+-+.+..+..|+ ....+...|+..
T Consensus 402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s-~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~a 480 (1238)
T KOG1127|consen 402 QRAKGLAPIEANVYTDAAITLDLVSSLS-FNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHA 480 (1238)
T ss_pred hhhcchhHHHHhhchHHHHHHHHHHHhh-cCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4455566666777777777777666554 2211111111111 223457889999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 006937 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (625)
Q Consensus 105 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (625)
|-+++++++.-..++..+|.+|...-+...|..+|+++.++++.+..+ ....+..|....+++.|......+-
T Consensus 481 li~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea-------aaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 481 LIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA-------AAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh-------HHHHHHHhhccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998877 4556667777899999999977766
Q ss_pred hhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 185 KIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (625)
Q Consensus 185 ~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (625)
+..|.. ...|..+|..|.+.++...|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+....
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 666543 345677999999999999999999999999999999999999999999999999999999999999987766
Q ss_pred hhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------
Q 006937 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-------ADAMYNLGVAYGEMLKFDMAIVFYELAFHF------ 329 (625)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~------ 329 (625)
+..+..... .|.+.+|+..+...+...... ++.+..++..+...|-+.+|...+++.++.
T Consensus 634 fk~A~~ecd-------~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 634 FKEAVMECD-------NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 666665555 468999998888877654433 345555555555555555555555554432
Q ss_pred -----------------------CC-----------------------------------------CCHHHHHHHHHHHH
Q 006937 330 -----------------------NP-----------------------------------------HCAEACNNLGVIYK 345 (625)
Q Consensus 330 -----------------------~~-----------------------------------------~~~~~~~~la~~~~ 345 (625)
.| ..+..|+++|..|+
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 01 11346777887776
Q ss_pred H--------cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006937 346 D--------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (625)
Q Consensus 346 ~--------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (625)
. +.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.+...|.....|.++|.++....+
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 6 2344689999999999999999999999998 667999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhhhhHHH
Q 006937 418 ISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (625)
Q Consensus 418 ~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (625)
++.|...|.++..++|.+...|.+..+
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Al 892 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEAL 892 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHH
Confidence 999999999999999999888766543
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.84 E-value=3.7e-17 Score=158.25 Aligned_cols=346 Identities=16% Similarity=0.153 Sum_probs=282.4
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006937 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (625)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 162 (625)
..++..+.-.+..++|.+.++..+.+++..|++++.+...|..+...|+-++|......++..++.+... |..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC-------wHv 80 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC-------WHV 80 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh-------HHH
Confidence 4566677778889999999999999999999999999999999999999999999999999998887665 777
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 006937 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (625)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 242 (625)
+|.++....+|++|+++|+.|+..+|++...+..++.+..++++++.....-.+.++..|..-..|...+..+...|++.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC---CCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 006937 243 SAIACYERCLAVS---PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 243 ~A~~~~~~al~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 319 (625)
.|...++...+.. |+... .....+......+....|..++|++.+..--...-+........+.++..++++++|
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~--~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKED--YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHH--HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhH
Confidence 9999988877665 33222 222334444455666778888888877765544444555677789999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHc----------------------------------c-
Q 006937 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV-ECYQMALS----------------------------------I- 363 (625)
Q Consensus 320 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~----------------------------------~- 363 (625)
...|...+..+|++...+..+-.++..-.+--+++ ..|...-+ .
T Consensus 239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 99999999999999877666555553111111111 11111100 0
Q ss_pred --------------------------------------C--------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 364 --------------------------------------K--------PNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 364 --------------------------------------~--------~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
+ |.. ...++.++.-+...|+++.|..+++.|+
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 0 111 1245667888889999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 006937 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (625)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (625)
...|+..+.+...|+++...|+.++|..++..+.+++-.|.-
T Consensus 399 dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 399 DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 999999999999999999999999999999999999866543
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.84 E-value=2.4e-18 Score=160.63 Aligned_cols=206 Identities=21% Similarity=0.179 Sum_probs=188.8
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
...+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (625)
++...|++++|+..+++++...+.... ...+..+|.++...|++++|...+.+++..+|.+...+..+|.++...
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQP-----ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 999999999999999999985422111 223677899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (625)
Q Consensus 205 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (625)
|++++|...++++++..|.++..+..++.++...|+.++|..+.+.+....
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999999999999989889999999999999999999999888776554
No 72
>PLN03077 Protein ECB2; Provisional
Probab=99.84 E-value=4.3e-17 Score=180.22 Aligned_cols=360 Identities=10% Similarity=0.017 Sum_probs=280.5
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHCG 123 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la 123 (625)
.+...+..+...|.+.|++++|.++|++... .+...|..+...|.+.|++++|++.|++..+. .|+. ..+..+-
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll 396 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVL 396 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHH
Confidence 3567788889999999999999999998643 35678999999999999999999999988654 3544 3455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (625)
..+...|++++|.+.++.+.+....... .++..+...|.+.|++++|.+.|++..+ .+...|..+...|..
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~------~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYV------VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRL 467 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcch------HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHH
Confidence 5778888999999988888876543222 1366677778888888888888887543 345677888888888
Q ss_pred cCCHHHHHHHHHHHHHh-CCCCH----------------------------------HHHHHHHHHHHHcCCHHHHHHHH
Q 006937 204 LMQYDTALGCYEKAALE-RPMYA----------------------------------EAYCNMGVIYKNRGDLESAIACY 248 (625)
Q Consensus 204 ~~~~~~A~~~~~~al~~-~~~~~----------------------------------~~~~~la~~~~~~g~~~~A~~~~ 248 (625)
.|+.++|+..|+++... .|+.. .....+...|.+.|+.++|...|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 88888888888887653 23221 12233446778888888888888
Q ss_pred HHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006937 249 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (625)
Q Consensus 249 ~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al 327 (625)
+.. +.+...|.. +...+...|+.++|+++|++..+... .+..++..+-..+...|+.++|..+|+...
T Consensus 548 ~~~----~~d~~s~n~-------lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 548 NSH----EKDVVSWNI-------LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred Hhc----CCChhhHHH-------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 775 333334444 44445557899999999999887532 244556677778999999999999999998
Q ss_pred hhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 006937 328 HFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (625)
Q Consensus 328 ~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (625)
+.. ..+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++++++.|++...+
T Consensus 617 ~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y 694 (857)
T PLN03077 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY 694 (857)
T ss_pred HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Confidence 543 234688999999999999999999999986 34554 67788888888899999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
..++.+|...|++++|.+..+...+.
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999999999999887653
No 73
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.6e-19 Score=162.93 Aligned_cols=262 Identities=19% Similarity=0.158 Sum_probs=225.1
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006937 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (625)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 236 (625)
+.-....|..++...+|.+|+..+..+++..|+++..|.+.+.++...+++++|....++.+++.|.....+...+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 33456677888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHhc
Q 006937 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN---WHYADAMYNLGVAYGEM 313 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~ 313 (625)
..++..+|...++.. .+ .....++..+++.+..+ |.-..+....+.++...
T Consensus 129 a~~~~i~A~~~~~~~---~~-----------------------~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~ 182 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSK---QA-----------------------YKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFL 182 (486)
T ss_pred hhHHHHHHHHHhhhh---hh-----------------------hHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhc
Confidence 999999998888711 00 01223333344433333 33345677788999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH------------HHHHHHHHHHHc
Q 006937 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ------------SLNNLGVVYTVQ 381 (625)
Q Consensus 314 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~------------~~~~la~~~~~~ 381 (625)
|++++|...--..+++++.+.++++..|.++...++.+.|+..|++++.++|++.. .+..-|.-.++.
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 99999999999999999999999999999999999999999999999999998643 677899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 006937 382 GKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (625)
Q Consensus 382 g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (625)
|++.+|.+.|..+|.++|++ +..|.+++.+..++|+..+|+...+.+++++|....+...+..
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 99999999999999999986 5678999999999999999999999999999998877766543
No 74
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.3e-15 Score=142.01 Aligned_cols=369 Identities=14% Similarity=0.071 Sum_probs=294.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
+...|+..|+--..++++..|..+|+++|..+..+...|+..+.+-++......|...+.+++.+-|.-...|+....+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 45567788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
...|+...|.++|++-++..|+.. + +......-.+.+..+.|...|++-+-..|+ ...|...+..-.+.|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eq-a-------W~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQ-A-------WLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN 222 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHH-H-------HHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc
Confidence 999999999999999999999843 3 334444455567777888888887777765 6677777777777888
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------------------------
Q 006937 207 YDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF------------------------- 258 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------------- 258 (625)
..-|...|++|++.-.++. ......|..-..+..++.|.-+|+-+++.-|.+
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 8888888887776544432 233344444455666666766666666665554
Q ss_pred -------------------HHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHH-
Q 006937 259 -------------------EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD---------AMYNLGVA- 309 (625)
Q Consensus 259 -------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~---------~~~~la~~- 309 (625)
.++|..+ -.+....|+.+.-.+.|++++...|...+ .|.+.+..
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdy-------lrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalye 375 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDY-------LRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYE 375 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHH-------HHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 2222222 22233467889999999999988776432 22332221
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHH
Q 006937 310 YGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385 (625)
Q Consensus 310 ~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 385 (625)
-....+.+.+.+.|+.++++-|.. +.+|...|....++.+...|.+.+-.|+-..|.+ .+......+-.++++++
T Consensus 376 Ele~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFD 454 (677)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHH
Confidence 245789999999999999998875 7888999999999999999999999999999985 45555666778899999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
...++|++.++..|++..+|...|.+-..+|+.+.|...|+-|++..
T Consensus 455 RcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999764
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.83 E-value=3.9e-18 Score=144.66 Aligned_cols=207 Identities=23% Similarity=0.215 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (625)
..+...||.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.+.|+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------------- 101 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------------- 101 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-------------
Confidence 3456666666677777777777777777777776666666666666666666666666666666555
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC
Q 006937 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRD 348 (625)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~ 348 (625)
+.+++++.|..++.+|++++|...|++++.. .+..+..+.++|.|..+.|
T Consensus 102 ----------------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~g 153 (250)
T COG3063 102 ----------------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAG 153 (250)
T ss_pred ----------------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcC
Confidence 4455566666666666666666666666653 3445667777777777777
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (625)
+++.|..+|+++++++|+.+.....++..+++.|++..|..++++.....+-..+.+.....+-...|+-+.|-++=.+.
T Consensus 154 q~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 154 QFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred CchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777766666677766677777777777777777777
Q ss_pred HhcCCCChhh
Q 006937 429 LKIDPDSRNA 438 (625)
Q Consensus 429 l~~~p~~~~~ 438 (625)
....|...+.
T Consensus 234 ~r~fP~s~e~ 243 (250)
T COG3063 234 QRLFPYSEEY 243 (250)
T ss_pred HHhCCCcHHH
Confidence 7777776543
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=5.3e-17 Score=144.19 Aligned_cols=258 Identities=20% Similarity=0.211 Sum_probs=142.0
Q ss_pred hCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHH
Q 006937 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKNRGDLESA 244 (625)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A 244 (625)
.++.++|+..|..+++.+|...++...||++|...|..+.|+..-+..++. |+. .-+...+|.-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 344444444444444444444444444444444444444444444433322 211 22344444444444444444
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhcCCHHHH
Q 006937 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----ADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~~~~~~A 319 (625)
...|....+...--.. ++..+-.+|....++++|++..++..+..++. +..+..++..+....+.+.|
T Consensus 127 E~~f~~L~de~efa~~-------AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 127 EDIFNQLVDEGEFAEG-------ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred HHHHHHHhcchhhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 4444444432221111 22222333333444455554444444444432 23455566666666666666
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006937 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (625)
Q Consensus 320 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (625)
+..+.++++.+|.+..+-..+|.++...|+|++|++.++.+++.+|+. +++...|..||..+|+.++.+..+.++.+..
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 666666666666666666667777777777777777777777766665 4566667777777777777777777777666
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 399 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 399 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
++ +.+...++.+-....-.+.|..+..+-+...|+-.
T Consensus 280 ~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 280 TG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred CC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 55 44445555555566666667777777777777644
No 77
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.4e-16 Score=141.63 Aligned_cols=234 Identities=20% Similarity=0.263 Sum_probs=196.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-----HHhhHHHHH
Q 006937 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-----AKNNMAIAL 269 (625)
Q Consensus 195 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~ 269 (625)
+..|.-+.-.++.++|+..|..+++.+|...++...+|.++...|..+.|+..-+..++ .|+... +...++.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 34466667778889999999999999999999999999999999999999988776654 455433 333444444
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHH
Q 006937 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-----AEACNNLGVIY 344 (625)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~ 344 (625)
.. .|-++.|...|....+...--..++..+..+|....++++|++.-++..++.+.. +..+..++..+
T Consensus 118 m~-------aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 118 MA-------AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HH-------hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 44 5688999999998887666667888999999999999999999999998887765 56788899999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHH
Q 006937 345 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSISLAID 423 (625)
Q Consensus 345 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~ 423 (625)
....+.+.|...+++|++.+|++..+-..+|.+....|+|+.|++.++.+++.+|+. +++...|..+|..+|+.++.+.
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887 5788889999999999999999
Q ss_pred HHHHHHhcCCCCh
Q 006937 424 AYEQCLKIDPDSR 436 (625)
Q Consensus 424 ~~~~al~~~p~~~ 436 (625)
++.++.+..++..
T Consensus 271 fL~~~~~~~~g~~ 283 (389)
T COG2956 271 FLRRAMETNTGAD 283 (389)
T ss_pred HHHHHHHccCCcc
Confidence 9999998887643
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=1.2e-17 Score=155.98 Aligned_cols=203 Identities=26% Similarity=0.288 Sum_probs=144.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH
Q 006937 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (625)
Q Consensus 190 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 269 (625)
....+..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..++++++..|.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------- 98 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN----------- 98 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------
Confidence 356677777777777777777777777777777777777777777777777777777777776665554
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHc
Q 006937 270 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDR 347 (625)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~ 347 (625)
...+..+|.++...|++++|+..+++++... +.....+..+|.++...
T Consensus 99 ------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 99 ------------------------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred ------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 3445555556666666666666666666532 34456667777777777
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
|++++|...++++++..|++...+..+|.++...|++++|..++++++...|.++..+..++.++...|+.++|..+.+.
T Consensus 149 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred HHhcCC
Q 006937 428 CLKIDP 433 (625)
Q Consensus 428 al~~~p 433 (625)
+....|
T Consensus 229 ~~~~~~ 234 (234)
T TIGR02521 229 LQKLFP 234 (234)
T ss_pred HHhhCc
Confidence 665543
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.82 E-value=1.3e-17 Score=164.65 Aligned_cols=245 Identities=23% Similarity=0.316 Sum_probs=206.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 006937 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN- 257 (625)
Q Consensus 187 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~- 257 (625)
.|.-..+...++..|..+|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666677788999999999999999999999987 5555566667999999999999999999999987431
Q ss_pred cHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 006937 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (625)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 329 (625)
....+...+.++.+++..|...|++++|..++++++++.. .-...+..++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1122335677888889899999999999999999987632 23456888999999999999999999999987
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 330 --------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQGKMDAAAEMIEK 393 (625)
Q Consensus 330 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 393 (625)
++.-+..+.++|.+|..+|++++|.++|++|+.+. +.....+..+|..+.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 23447789999999999999999999999999874 23356889999999999999999999999
Q ss_pred HHHh-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 394 AIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 394 al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
+..+ .|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8876 3555678999999999999999999999998853
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.82 E-value=2.2e-17 Score=162.97 Aligned_cols=240 Identities=25% Similarity=0.347 Sum_probs=203.3
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Q 006937 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------R 221 (625)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~ 221 (625)
.+...++..|..+|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34666999999999999999999999998 4544556667999999999999999999999975 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC----
Q 006937 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF-EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN---- 296 (625)
Q Consensus 222 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~---- 296 (625)
|....++.+||.+|...|++++|..++++++++.... ......++..+..++.++...+++++|..++++++++.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 4456789999999999999999999999999875441 12233456677788888888999999999999998763
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 006937 297 ----WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI- 363 (625)
Q Consensus 297 ----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 363 (625)
+..+..+.++|.+|..+|++++|.+++++++.+. +.....+..+|..+.+.+++.+|...|.++..+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2345689999999999999999999999999873 334678899999999999999999999998876
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 364 ------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 364 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
.|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455668999999999999999999999999854
No 81
>PLN02789 farnesyltranstransferase
Probab=99.81 E-value=1.4e-17 Score=157.74 Aligned_cols=210 Identities=12% Similarity=0.060 Sum_probs=170.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhc
Q 006937 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (625)
+...+++++|+..+.++++++|.+..+|...+.++..+| ++++++..++++++.+|++..++...+.++..++.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~----- 121 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP----- 121 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc-----
Confidence 334566777888888888888888888888888887777 56788888888888888887777777666655542
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCH----HH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNL----DK 352 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~----~~ 352 (625)
...++++.+++++++.+|++..+|...+.++...|++++|++.+.++++.+|.+..+|+.++.++... |.+ ++
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 12366788888888889999999999999999999999999999999999999999999999888765 323 47
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006937 353 AVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (625)
Q Consensus 353 A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (625)
++.+..+++..+|++..+|..++.++.. +++..+|...+.+++...|++..++..|+.+|...
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888889999999999999999999887 45667899999999888899999999999998763
No 82
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2.6e-14 Score=133.50 Aligned_cols=385 Identities=14% Similarity=0.058 Sum_probs=289.7
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
.+.-.|+..|.+-++.+....|..++++++..-|.--..|+.....-..+|+...|.+.|++.++..|+ ..+|......
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~f 183 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKF 183 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHH
Confidence 345678899999999999999999999999999999899999999999999999999999999999885 3466666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNLGVVYS 202 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~ 202 (625)
-.+.++.+.|..+|++.+-..|+-.. +...+..-.+.|+..-|...|+++++.-.++. ..+...|..-.
T Consensus 184 ElRykeieraR~IYerfV~~HP~v~~--------wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVLVHPKVSN--------WIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHhhHHHHHHHHHHHHheecccHHH--------HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 66777777777777777777766322 34444444445555555555555554422211 11112222222
Q ss_pred HcCCHHHHHH--------------------------------------------HHHHHHHhCCCCHHHHHHHHHHHHHc
Q 006937 203 ELMQYDTALG--------------------------------------------CYEKAALERPMYAEAYCNMGVIYKNR 238 (625)
Q Consensus 203 ~~~~~~~A~~--------------------------------------------~~~~al~~~~~~~~~~~~la~~~~~~ 238 (625)
.+..++.|.- .|++.++.+|.+.++|+..-.+....
T Consensus 256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV 335 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc
Confidence 2222222222 34455667888889999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhh---hhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHH
Q 006937 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV---KLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYG 311 (625)
Q Consensus 239 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~ 311 (625)
|+.+.-.+.|++++...|....-....-.+|.-+..++ ....+.+.+.++|+.++++-|.. +..|...|....
T Consensus 336 g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 336 GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 99999999999999888764433222222332222221 23678999999999999998864 678999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (625)
Q Consensus 312 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (625)
.+.+...|.+.+-.++...|.+ ........+-.++++++....+|++-++..|.+..+|...|.+-..+|+.+.|...|
T Consensus 416 Rq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred HHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999984 455566677788899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 392 EKAIAANPTYA--EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 392 ~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
+-|+....-+. -.|-.....-...|.++.|...|++.|+..+... +|..
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis 545 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS 545 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence 99998754332 2344445556678999999999999999988766 4443
No 83
>PLN02789 farnesyltranstransferase
Probab=99.79 E-value=8e-17 Score=152.60 Aligned_cols=210 Identities=11% Similarity=0.014 Sum_probs=129.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-
Q 006937 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY- 207 (625)
Q Consensus 130 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~- 207 (625)
++.++|+..+.++++++|++..++. ..+.++...| ++++++..++++++.+|++..+|...+.++...|+.
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~-------~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWH-------FRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHH-------HHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 4445555555555555555554422 2222223333 345566666666666666666666666665555542
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHH
Q 006937 208 -DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (625)
Q Consensus 208 -~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (625)
++++.+++++++.+|.+..+|...+.++...|+++++++++.++++.+|.+..++...+.++..++..-......++++
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 4556666666666666666666666666666666666666666666666666666666555544322100112345677
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 287 AYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (625)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 346 (625)
.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.+..++..|+.+|..
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 78888888888888888888888877 3445667777777777777777777777777764
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.4e-15 Score=136.66 Aligned_cols=374 Identities=15% Similarity=0.097 Sum_probs=252.0
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHh--------------cCC-
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK--------------LDP- 113 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p- 113 (625)
..-+..|.+++..|+|++|+..|+-+...+.-+.+.+.++|-|++-+|.|.+|.....++-+ ++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 34556788888888888888888887776666777888888888888888888776554421 110
Q ss_pred -----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 006937 114 -----------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (625)
Q Consensus 114 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~ 182 (625)
+..+-...++.+.+..-.|.+|++.|++++..+|+.... -..++.+|++..-++-+.+.+.-
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al-------NVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL-------NVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh-------HHHHHHHHHhcchhhhHHHHHHH
Confidence 111223445555666667777777777777766664332 44566777777777777777777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------HHhCC----CCHHHHHH
Q 006937 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA----------------------------ALERP----MYAEAYCN 230 (625)
Q Consensus 183 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------------------------l~~~~----~~~~~~~~ 230 (625)
.++..|+++.+...++...++.=+-..|..-.... ++.-| .-|++..+
T Consensus 211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 77777777777666666555432222222111111 11112 13567777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Q 006937 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGV 308 (625)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~ 308 (625)
+...|.++++..+|+...+. +.|..+..+...+.+...+|.-........-|...|+-.-+.. -+.......++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 77788888888888777653 5677777777777777777655444444555555554332211 122234556777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHcCCHHHH
Q 006937 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAA 387 (625)
Q Consensus 309 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A 387 (625)
+++...++++.+.++...-....++....+++|..+...|++.+|.+.|-+.-..+ .+.......++.||...+.++-|
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 77888889999999988888888888888999999999999999999998776555 33445667889999999999988
Q ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 388 AEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 388 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
...+-+. ..|. .-..+..+|..+.+.+++--|.+.|...-.++|+
T Consensus 448 W~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 448 WDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 8776542 1222 2345566788888899998888999888888886
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=2.8e-15 Score=134.76 Aligned_cols=386 Identities=16% Similarity=0.127 Sum_probs=255.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCH-HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 006937 56 NILRSRNKFVDALALYEIVLEKDSGNV-EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (625)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (625)
+-++...+|..|+.+++-.+..+.+.. ..-..+|.|++.+|+|++|+..|.-+.+.+.-+.+.+..++.+++-.|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 456788999999999998776554433 5677899999999999999999999988777788899999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (625)
Q Consensus 135 A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 214 (625)
|...-.++ |+++-... +++.++ .+.++-++-.. |...+. +..+-...++.+.+..-.|++|++.|
T Consensus 110 A~~~~~ka----~k~pL~~R----Llfhla---hklndEk~~~~-fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIR----LLFHLA---HKLNDEKRILT-FHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHhhC----CCChHHHH----HHHHHH---HHhCcHHHHHH-HHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 98877765 44443211 122222 23344333222 222221 12244556677777777777777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh-----------cCCHH
Q 006937 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL-----------EGDIN 283 (625)
Q Consensus 215 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~ 283 (625)
.+.+..+|+....-..++.+|.++.-++-+.+.+.-.+...|+++.+....+..++++-.-... ...+.
T Consensus 175 krvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 175 KRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred HHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 7777777777777777777777777777777777777777777776666555554443210000 01112
Q ss_pred HHHHHHHH----------HHhhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 284 QGVAYYKK----------ALYYNWH----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 349 (625)
Q Consensus 284 ~A~~~~~~----------~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 349 (625)
.+..+++. +++.-|. .+++..++...|..+++..+|+...+ +++|..+.-+...|.+....|+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQ 331 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhh
Confidence 22222221 1222222 35678888888888888888887765 4578888888888888887776
Q ss_pred HHHHHHHHHHHHc---c------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006937 350 LDKAVECYQMALS---I------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 420 (625)
Q Consensus 350 ~~~A~~~~~~al~---~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 420 (625)
--...+.++-|-+ + .-+.......++.+++-..++++.+.++...-...-++....+++|+++...|++.+
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHH
Confidence 5444444333322 1 112233456677777777888888888887777777777788888888888888888
Q ss_pred HHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHH
Q 006937 421 AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 460 (625)
Q Consensus 421 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (625)
|.+.|-+.-...-.+. ...-.+++.+|+..+.+.-+|+.
T Consensus 412 aEelf~~is~~~ikn~-~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNK-ILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHhhhcChhhhhh-HHHHHHHHHHHHhcCCchHHHHH
Confidence 8888876654332222 33344577788877776665554
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.78 E-value=1.7e-15 Score=150.76 Aligned_cols=211 Identities=17% Similarity=0.048 Sum_probs=147.6
Q ss_pred CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 006937 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (625)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 154 (625)
+|+.+.++..+|..+...|+.+++...+.++.+..|.+ .+.....+.++...|++++|...++++++..|++.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68888888888888888888888888888887776644 445667788888888888888888888888888775432
Q ss_pred HHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006937 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (625)
Q Consensus 155 ~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 234 (625)
. +..+..++ ...+....+.+.+......+|.....+..+|.++...|++++|+..++++++..|+++.++..+|.+
T Consensus 82 ~-~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLG---DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhc---ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 2 11222222 1234444455554444455677777778888888999999999999999999988888888888999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 235 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
+...|++++|+.++++++...|..+.. ....+..++.++...|++++|+..+++++..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~---~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSML---RGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcch---hHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999999999988888877642211 1122333444444455555555555555433
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.76 E-value=3.5e-15 Score=148.53 Aligned_cols=309 Identities=15% Similarity=0.076 Sum_probs=229.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q 006937 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (625)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 191 (625)
+|+.+.++..+|.++...|+.+.+...+.++.+..+.+.... ......+..+...|++++|...++++++.+|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER----ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 799999999999999999999999999999998888664432 2244567888899999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 006937 192 PAYYNLGVVYSELMQY----DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (625)
Q Consensus 192 ~~~~~la~~~~~~~~~----~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (625)
.++.. +..+...|++ ..+.+.+.......|.....+..+|.++...|++++|+..++++++..|++......++.
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 87775 5555555544 444444444335667778888899999999999999999999999999998655554444
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHH---
Q 006937 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACN--- 338 (625)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~--- 338 (625)
++...|++++|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|. ......
T Consensus 157 -------i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T cd05804 157 -------VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAA 229 (355)
T ss_pred -------HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHH
Confidence 44457899999999999999876433 35668999999999999999999999876662 222111
Q ss_pred HHHHHHHHcCCHHHHHHH--H-HHHHccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHH
Q 006937 339 NLGVIYKDRDNLDKAVEC--Y-QMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---------YAEA 404 (625)
Q Consensus 339 ~la~~~~~~~~~~~A~~~--~-~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~ 404 (625)
.+...+...|....+..+ + .......+. ........+.++...|+.++|...++........ ...+
T Consensus 230 ~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 309 (355)
T cd05804 230 SLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGL 309 (355)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhH
Confidence 222333334433333332 1 111111121 2233346888889999999999999887664322 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 405 YNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
....+.++...|++++|.+.+..++.+.
T Consensus 310 ~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 310 PLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999765
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.74 E-value=6.7e-16 Score=143.51 Aligned_cols=202 Identities=14% Similarity=0.118 Sum_probs=162.9
Q ss_pred CCCCCCccccccccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHhHHHHHHHhcCHHHHHHHHHH
Q 006937 31 GTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSE 107 (625)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~ 107 (625)
+|++.......+.....++.++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~ 95 (235)
T TIGR03302 16 GCSSKKKKEADPVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADR 95 (235)
T ss_pred hccCCcccccCCcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4555433333345567889999999999999999999999999999999876 6889999999999999999999999
Q ss_pred HHhcCCCcHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHH
Q 006937 108 AVKLDPQNAC---AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDG 176 (625)
Q Consensus 108 al~~~p~~~~---~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A 176 (625)
+++..|+++. +++.+|.++... |++++|++.|++++..+|++......+ ..++.... .
T Consensus 96 ~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~~~-------~ 164 (235)
T TIGR03302 96 FIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYLRN-------R 164 (235)
T ss_pred HHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHHHH-------H
Confidence 9999998776 689999999876 889999999999999999987653222 11111110 0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLA 253 (625)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (625)
.......+|.++...|++.+|+..++++++..|+. +.+++.+|.++...|++++|..+++.+..
T Consensus 165 -------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 -------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 01234577888999999999999999999887654 57899999999999999999998888776
Q ss_pred cCC
Q 006937 254 VSP 256 (625)
Q Consensus 254 ~~~ 256 (625)
..|
T Consensus 232 ~~~ 234 (235)
T TIGR03302 232 NYP 234 (235)
T ss_pred hCC
Confidence 655
No 89
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.73 E-value=2.3e-14 Score=149.19 Aligned_cols=160 Identities=13% Similarity=0.057 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006937 284 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (625)
Q Consensus 284 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (625)
+++.-........|.+++++.+||.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 33333344445578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 006937 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (625)
Q Consensus 364 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (625)
+|+++..++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+.+++
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877666655543
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.71 E-value=1.4e-13 Score=138.12 Aligned_cols=249 Identities=12% Similarity=0.027 Sum_probs=160.6
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
.+.++-.+.++...|++++|++.+++....-.+....+-.+|.++..+|++++|...|...++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46677888888999999999999988877778888888889999999999999999999999999998888888777763
Q ss_pred HcC-----CHHHHHHHHHHHHhcCCCCHHHH-------------------------------------------------
Q 006937 128 DEG-----RLVEAAESYHKALSADPSYKPAA------------------------------------------------- 153 (625)
Q Consensus 128 ~~g-----~~~~A~~~~~~al~~~~~~~~~~------------------------------------------------- 153 (625)
... +.+.-..+|++.....|......
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 222 45555666666655554421110
Q ss_pred ---------------------------HHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 154 ---------------------------ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 154 ---------------------------~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
..+..+++.++..+...|++++|+++++++++..|..++.+...|.++...|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 00112234445555555666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH--HHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE--IAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
+.+|.+.++.+..+++.+-.+....+..+.+.|+.++|.+.+......+.+.. ..-....+.....|..+...|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 66666666666665555555555555555566666666555555443331111 1111223344566777888888888
Q ss_pred HHHHHHHHHhhC
Q 006937 285 GVAYYKKALYYN 296 (625)
Q Consensus 285 A~~~~~~~l~~~ 296 (625)
|++.|..+.+..
T Consensus 324 ALk~~~~v~k~f 335 (517)
T PF12569_consen 324 ALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHH
Confidence 888888777653
No 91
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=5e-13 Score=123.10 Aligned_cols=299 Identities=13% Similarity=0.052 Sum_probs=211.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Q 006937 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVV 200 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~ 200 (625)
-|..-+..|+|.+|.....+.-+..+...-. +..-+....+.|+++.+-.++.++-+..++ ...+....+.+
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~-------~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLA-------YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHH-------HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 3444556677777777777765555443332 444556666677777777777777776333 34566677777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-HhhHHHHHHHhchhhhhc
Q 006937 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA-KNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 279 (625)
....|++..|.....++++..|.++.++.....+|...|++.+...++.+.-+..--+... ...--.++..+-+-....
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 7778888888888888888888888888777888888888887777777665543322211 111111111111001111
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
+..+.-..+++..-..-..++.....++.-+..+|+.++|.+....+++..-+.. ....++ ...-++...=++..++
T Consensus 243 ~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 243 NGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEK 319 (400)
T ss_pred ccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHH
Confidence 1222222344444444445678888899999999999999999999998765533 222222 2456788999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 360 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 360 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
.++..|+++..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.++.++.+
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887 777899999999999999999999999854
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.1e-13 Score=131.22 Aligned_cols=336 Identities=15% Similarity=0.059 Sum_probs=237.6
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 006937 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL 163 (625)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 163 (625)
.++.--..+...|+|++|+....+++...|++..++...-.++.+.++|++|+...++-....-.+ ...+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~--------~~~fEK 85 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN--------SFFFEK 85 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc--------hhhHHH
Confidence 334444456678999999999999999999999999999999999999999996554432211111 113577
Q ss_pred HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Q 006937 164 GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER---------------------- 221 (625)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------------- 221 (625)
+.|.++.+..++|+..++ ..++.+..+....|.+++++|+|++|+..|+..++.+
T Consensus 86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 888999999999999998 4566677788999999999999999999999885422
Q ss_pred --------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 222 --------PM-YAEAYCNMGVIYKNRGDLESAIACYERCLAV--------SPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 222 --------~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
|. ..+.+++.+.++...|+|.+|++.+++++++ +.+..+....+..+...++.++...|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 11 4567899999999999999999999999443 233355667778888899999999999999
Q ss_pred HHHHHHHHHhhCCCCHHH-------------------------------------------------HHHHHHHHHhcCC
Q 006937 285 GVAYYKKALYYNWHYADA-------------------------------------------------MYNLGVAYGEMLK 315 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~-------------------------------------------------~~~la~~~~~~~~ 315 (625)
|...|...+..+|.+... +.+.+.+.+..+.
T Consensus 243 a~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999887765422 1112222222222
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (625)
Q Consensus 316 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (625)
-+.+.+.....-...|....-.........+...+.+|.+++....+.+|.. ..+...++.+...+|+++.|++.+...
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2222222222212223322222223333333337888899999888888887 668888999999999999999999833
Q ss_pred H--------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 395 I--------AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 395 l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
+ +.. ..+.+-..+-..+.+.++.+-|...+.+++..
T Consensus 403 ~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~ 446 (652)
T KOG2376|consen 403 LESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKW 446 (652)
T ss_pred hhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 3 221 22444445555667777766666666666654
No 93
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.68 E-value=2.6e-15 Score=137.61 Aligned_cols=295 Identities=22% Similarity=0.269 Sum_probs=215.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh------CCCCHHHHH
Q 006937 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYY 195 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~ 195 (625)
-|.-+++.|+....+..|+.+++...++.. .+..+|..+|..|+..++|++|+++-..-+.+ .-..+..--
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~---tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLS---TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHH---HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 356677788888888888888887766543 35667888888888888888888765433322 222345566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGD--------------------LESAIACYE 249 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~ 249 (625)
+||+.+.-.|.|++|+.+..+-+.... ....+++++|.+|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 788888888889888888877665432 235688888888887654 234455555
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 006937 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFY 323 (625)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~ 323 (625)
.-+++..... .....+.++-++|+.|...|+++.|+..-+.-+.+.... ..++.++|.++.-.|+++.|+++|
T Consensus 180 eNL~l~~~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 180 ENLELSEKLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 5554433322 233457788899999999999999999888877665443 347889999999999999999999
Q ss_pred HHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 324 ELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMI 391 (625)
Q Consensus 324 ~~al~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (625)
++.+.+. ...+...+.||..|.-..++++|+.++++-+.+.. ....+++.+|..+..+|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9887652 22366778999999999999999999998887643 23568899999999999999999998
Q ss_pred HHHHHhC-----CC-cHHHHHHHHHHHHHcCCHHH
Q 006937 392 EKAIAAN-----PT-YAEAYNNLGVLYRDAGSISL 420 (625)
Q Consensus 392 ~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~ 420 (625)
++.++.. +. ...+..++...-..+|..+.
T Consensus 339 e~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 339 ELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 8887752 22 23456667766666665443
No 94
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=2.2e-12 Score=118.98 Aligned_cols=298 Identities=14% Similarity=0.006 Sum_probs=199.3
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ-NACAHTHCGI 124 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 124 (625)
..+......|..-+..|+|.+|.+...+.-+..+.....+..-+.+.-++|+++.|-.++.++-+..++ +.......+.
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 345556677888889999999999999988877777788888889999999999999999999998544 4567788899
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHH---HHHHHHHH-
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP---AYYNLGVV- 200 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~la~~- 200 (625)
+....|+++.|.....++++..|.++.. +.....+|...|++.+...++.+.-+..--+.. -+-+.+..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~v-------lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEV-------LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHH-------HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 555667778889999999998887765433211 11111111
Q ss_pred -HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhh
Q 006937 201 -YSELMQ---YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 276 (625)
Q Consensus 201 -~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~ 276 (625)
+.+..+ .+.-..+.+..-..-.+++.....++.-+...|+.++|.+..+.+++..-+.. +...+-.
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~----- 304 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPR----- 304 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhh-----
Confidence 111222 22222234433333345677788888888889999999999888887765432 1111111
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (625)
Q Consensus 277 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (625)
..-++...-++..++.++..|+++..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|.+.
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHH
Confidence 11345555555555555555555555555555555555555555555555554443 34445555555555555555555
Q ss_pred HHHHH
Q 006937 357 YQMAL 361 (625)
Q Consensus 357 ~~~al 361 (625)
+++++
T Consensus 384 r~e~L 388 (400)
T COG3071 384 RREAL 388 (400)
T ss_pred HHHHH
Confidence 55554
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=2.5e-13 Score=119.63 Aligned_cols=364 Identities=16% Similarity=0.132 Sum_probs=246.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 006937 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (625)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (625)
..+.+..+|++|++++..-.+.+|.+...+..+|.||+...++..|..+|++.-.+.|......+..+..+++.+.+.+|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc----------------CCCC----HHHHH-----HHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 006937 136 AESYHKALSA----------------DPSY----KPAAE-----CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (625)
Q Consensus 136 ~~~~~~al~~----------------~~~~----~~~~~-----~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (625)
+......... ..++ ..... .-+....+.|-+.++.|+++.|++-|+.+++...-+
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 8876554331 1100 00000 112235567777888899999999999999888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC-------------------------CHHHHHHHHHHHHHcCCH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALE----RPM-------------------------YAEAYCNMGVIYKNRGDL 241 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~-------------------------~~~~~~~la~~~~~~g~~ 241 (625)
+..-++++.++++.+++..|+++..+.++. .|. -.+++...+.++++.+++
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence 888889999999999999998888777653 332 124566677788888888
Q ss_pred HHHHHHHHHHHhcCCC--cHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 006937 242 ESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 242 ~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 319 (625)
+.|.+.+...--.... ++....+++.. ++ .+++.+...-++-.+.++|--.+...++-.+|++..-|+-|
T Consensus 258 eAA~eaLtDmPPRaE~elDPvTLHN~Al~--n~------~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 258 EAAQEALTDMPPRAEEELDPVTLHNQALM--NM------DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred HHHHHHhhcCCCcccccCCchhhhHHHHh--cc------cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHH
Confidence 8887766543211111 22222333221 11 35677777777778888887778888888888888878777
Q ss_pred HHHHHHHHhhCCCC-----HHHHHHHHHHH-HHcCCHHHHHHHHHHHHccCCCCHHHHHHHH-HHHHH--c---CCHHHH
Q 006937 320 IVFYELAFHFNPHC-----AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNFSQSLNNLG-VVYTV--Q---GKMDAA 387 (625)
Q Consensus 320 ~~~~~~al~~~~~~-----~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~--~---g~~~~A 387 (625)
...+.+ +|+. ....+.+-..+ ...-..++|.+-+.+.-.. ..+-+..++ .+... . ....+|
T Consensus 330 ADvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~---l~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 330 ADVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM---LTEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred HHHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 666543 3332 11222232222 2334555555544443221 111111111 11111 1 113345
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 006937 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (625)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (625)
++.|++++++. ..+....+++|+...++..+.+.|++..+...++..
T Consensus 403 i~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~ 449 (459)
T KOG4340|consen 403 VNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDV 449 (459)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccce
Confidence 55566665542 456777899999999999999999999988777643
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.67 E-value=4.5e-14 Score=147.70 Aligned_cols=290 Identities=13% Similarity=0.085 Sum_probs=224.5
Q ss_pred HcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 006937 76 EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (625)
Q Consensus 76 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (625)
..+|.+..++..+...+...+++++|+..++.+++..|+...+++.+|.++...+++.++... .++...+.+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------ 96 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------ 96 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc------
Confidence 347889999999999999999999999999999999999999999999999999998777666 555554443
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006937 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (625)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (625)
.++ .+++++...+...+.+..+++.+|.||-++|+.++|...++++++.+|+++.++.++|..|
T Consensus 97 ---------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 97 ---------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred ---------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 334 5566666666667888889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 006937 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (625)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 315 (625)
... +.++|++++.+++... ...+++..+.+++.+.+..+|.+.+.+..+-......-.
T Consensus 161 ae~-dL~KA~~m~~KAV~~~---------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYRF---------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHh-hHHHHHHHHHHHHHHH---------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc
Confidence 999 9999999999998652 124588899999999999999887765544333222211
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 316 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
+..+ ...+.-+-..|...+++++++.+++.+++.+|.+..+...++.+|. +.|.. ...++..+
T Consensus 219 ~~~~--------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l 281 (906)
T PRK14720 219 FTRL--------------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYL 281 (906)
T ss_pred cchh--------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHH
Confidence 2222 3445556677888889999999999999999999999999999887 34433 44444444
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 396 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 396 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
++. .+--....+..|+..|++.+..+|.+--.+
T Consensus 282 ~~s-----------~l~~~~~~~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 282 KMS-----------DIGNNRKPVKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred HHh-----------ccccCCccHHHHHHHHHHHeeecCCCEEEE
Confidence 431 121222466888899999998888775443
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.67 E-value=1.8e-15 Score=126.99 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=81.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 321 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
..++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4556666666553 4456666666666666666666666666666666666776666677777777777777766676
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 006937 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (625)
++.+++++|.++..+|++++|+..|++++++.|+++..+.++..+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 667777777777777777777777777777777666666554333
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.67 E-value=1.4e-14 Score=134.59 Aligned_cols=181 Identities=17% Similarity=0.076 Sum_probs=146.0
Q ss_pred CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 006937 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (625)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 154 (625)
++..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|++....
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~- 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD- 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH-
Confidence 455778999999999999999999999999999999876 5789999999999999999999999999999877642
Q ss_pred HHHHHHHHhHHHHHHh--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006937 155 CLAIVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (625)
Q Consensus 155 ~~a~~~~~l~~~~~~~--------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 226 (625)
.+++.+|.++... |++++|++.|++++..+|++...+..+..+....+ . ...
T Consensus 108 ---~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~ 167 (235)
T TIGR03302 108 ---YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAG 167 (235)
T ss_pred ---HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHH
Confidence 2356666666655 78999999999999999998766543332222111 0 012
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHhhHHHHHHHhchhhhhc
Q 006937 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~l~~~~~~~ 279 (625)
....+|.++...|++.+|+..++++++..|+. ..++..++.++..+|+.....
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 34578899999999999999999999997764 478899999999988765443
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.66 E-value=1.1e-12 Score=147.49 Aligned_cols=385 Identities=12% Similarity=-0.016 Sum_probs=275.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHc
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQNACAHTHCGILYKDE 129 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~ 129 (625)
....|..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+- .....++......+.++...
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 345567788899999888766554111 1122345556777778888887777665431 11123445567788888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH
Q 006937 130 GRLVEAAESYHKALSADPSYK--PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYS 202 (625)
Q Consensus 130 g~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~ 202 (625)
|++++|...+..+....+... ......+.+...++.++...|++++|...+++++...+.. ..+...+|.++.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 999999999998876533211 0111124445567888899999999999999999854432 235677899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHhchh
Q 006937 203 ELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTK 275 (625)
Q Consensus 203 ~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~ 275 (625)
..|++++|...+++++..... ...++..+|.++...|++++|...+++++........ .......++..++.+
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 999999999999999875332 1346678899999999999999999999876432210 001112234456777
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHH----HHHHHH
Q 006937 276 VKLEGDINQGVAYYKKALYYNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEAC----NNLGVI 343 (625)
Q Consensus 276 ~~~~~~~~~A~~~~~~~l~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~----~~la~~ 343 (625)
+...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.... .... ......
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 77889999999999998875332 24566778999999999999999999997763321 1111 112344
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHH
Q 006937 344 YKDRDNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYR 413 (625)
Q Consensus 344 ~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~ 413 (625)
+...|+.+.|..++.......+... ..+..++.++...|++++|...+++++.... ....++..+|.++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 5568999999999887665432222 2256889999999999999999999988621 23467889999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCh
Q 006937 414 DAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
..|+.++|...+.+++++.....
T Consensus 743 ~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HcCCHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999876543
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.65 E-value=4.5e-15 Score=124.56 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=119.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 006937 286 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 365 (625)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 365 (625)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788899988874 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006937 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (625)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (625)
+++.+++++|.++...|++++|+..|+++++..|+++..+.+++.+...+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876544
No 101
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.64 E-value=1.1e-12 Score=131.74 Aligned_cols=312 Identities=12% Similarity=0.031 Sum_probs=220.6
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 160 (625)
+.+.++....++...|++++|++.+++....-.+....+-..|.++..+|++++|...|...+..+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45778888999999999999999999988888899999999999999999999999999999999999988754443332
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006937 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (625)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~~~~~~~~~~la~~~~~~g 239 (625)
.... -....+.+.-...|++.....|...... .+...+..-..+.. +..++...+.. .-|.+...+-.+|....
T Consensus 83 g~~~--~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQL--QLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPE 157 (517)
T ss_pred hhhc--ccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChh
Confidence 1111 0112356777888888888787643332 22222222223433 33344444433 45566666666666444
Q ss_pred CHHHHHHHHHHHHhc---CCC----c---HHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 240 DLESAIACYERCLAV---SPN----F---EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 309 (625)
Q Consensus 240 ~~~~A~~~~~~al~~---~~~----~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 309 (625)
+..-...++...... ... . ......+..+++.++..+...|++++|+++++++++..|..++.+...|.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari 237 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 433333333333221 100 0 111222344566667777778889999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--C-------HHHHHHHHHHHHH
Q 006937 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F-------SQSLNNLGVVYTV 380 (625)
Q Consensus 310 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~-------~~~~~~la~~~~~ 380 (625)
+...|++.+|...++.+-.+++.+-.+....+..+.+.|+.++|.+.+..-...+.+ . .......|.+|.+
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888888888888999999998888776554421 1 1234467888888
Q ss_pred cCCHHHHHHHHHHHHHh
Q 006937 381 QGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 381 ~g~~~~A~~~~~~al~~ 397 (625)
.|++..|++.|..+.+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 99999998888888775
No 102
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.63 E-value=6.9e-15 Score=134.90 Aligned_cols=270 Identities=24% Similarity=0.302 Sum_probs=210.7
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHH
Q 006937 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCN 230 (625)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~ 230 (625)
..-|.-+++.|+....+..|+.+++...++ ..+|..||+.|+.+++|++|+++-..-+.+ .-..+...-+
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 344677788899999999999999997775 346788999999999999999976543322 2234566778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCC--------------------HHHHHHHHH
Q 006937 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAYYK 290 (625)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 290 (625)
+|.++.-.|.+++|+.+..+-+....... .....+.+++++|.+|...|+ ++.|.++|.
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLg-Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELG-DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHh-HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 99999999999999999988876654322 233446677777777765543 355666666
Q ss_pred HHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 291 KALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 291 ~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
.-+++.... ..++-++|..|+-+|+|+.|+..-+.-+.+... .-.++.++|.++.-.|+++.|+++|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 666554332 346788999999999999999998877766332 25688999999999999999999999
Q ss_pred HHHccC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 359 MALSIK----P--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYE 426 (625)
Q Consensus 359 ~al~~~----~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (625)
+.+.+. . ..+...+.+|..|.-..++++|+.++.+-+.+.. ....+++.||..+-.+|..++|+.+.+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 987652 2 2355788999999999999999999999887633 235788999999999999999999988
Q ss_pred HHHhc
Q 006937 427 QCLKI 431 (625)
Q Consensus 427 ~al~~ 431 (625)
+.+++
T Consensus 340 ~hl~~ 344 (639)
T KOG1130|consen 340 LHLRS 344 (639)
T ss_pred HHHHH
Confidence 88775
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.62 E-value=4.6e-14 Score=125.06 Aligned_cols=125 Identities=22% Similarity=0.250 Sum_probs=118.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 006937 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAE 389 (625)
Q Consensus 313 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~g~--~~~A~~ 389 (625)
.++.++++..++++++.+|++...|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 006937 390 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (625)
Q Consensus 390 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (625)
.++++++.+|++..+++.+|.++...|++++|+.+|++++++.|.+.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999988653
No 104
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3.7e-13 Score=116.07 Aligned_cols=174 Identities=17% Similarity=0.123 Sum_probs=162.1
Q ss_pred hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 276 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 355 (625)
Q Consensus 276 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 355 (625)
....++..-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+..++...--+...+|+.-+|++
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence 33467999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC
Q 006937 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAYEQCLKID 432 (625)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 432 (625)
.+...++..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++-.+..+|.+++-+| +.+-|.++|.++++++
T Consensus 142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999998887 5778999999999999
Q ss_pred CCChhhhhhHHHHhhhc
Q 006937 433 PDSRNAGQNRLLAMNYI 449 (625)
Q Consensus 433 p~~~~~~~~~~~~~~~~ 449 (625)
|.+..++....++...+
T Consensus 222 ~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 222 PKNLRALFGIYLCGSAL 238 (289)
T ss_pred hHhHHHHHHHHHHHHHH
Confidence 98888888876665554
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.59 E-value=8.8e-12 Score=140.15 Aligned_cols=348 Identities=13% Similarity=-0.019 Sum_probs=256.5
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC---------cHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLE-KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---------NACA 118 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~ 118 (625)
..+...+..+...|++..+..+++.+-. ....++......+.++...|++++|...+..+....+. ....
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 454 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF 454 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH
Confidence 4455567777888888887777665411 11234455677888889999999999999988764321 1334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC------CHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAP 192 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~ 192 (625)
...++.++...|++++|...+++++...+.... ...+.....+|.++...|++++|...+++++..... ...
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWY--YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 556788889999999999999999986554322 223344677888999999999999999999876332 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhh
Q 006937 193 AYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (625)
Q Consensus 193 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 264 (625)
++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++......... .
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~--~ 610 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ--Q 610 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch--H
Confidence 5678899999999999999999999875221 23345678899999999999999999998765432211 1
Q ss_pred HHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCC---HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---
Q 006937 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---ADAM----YNLGVAYGEMLKFDMAIVFYELAFHFNPHCA--- 334 (625)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--- 334 (625)
....+..++.+....|++++|...+.++....... .... ......+...|+.+.|...+.......+...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23455667888888999999999999997653321 1111 1123445568899999999877665332222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 335 -EACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 335 -~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
..+..++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++++...
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 2256789999999999999999999987632 23457889999999999999999999999998654
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.59 E-value=3e-13 Score=141.63 Aligned_cols=219 Identities=14% Similarity=0.075 Sum_probs=185.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhH
Q 006937 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (625)
Q Consensus 186 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 265 (625)
.+|.+..++..|...+...+++++|+..++.+++..|+....++.+|.++...+++.++... .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------- 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------- 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-------
Confidence 47889999999999999999999999999999999999999999999999999998888766 666555543
Q ss_pred HHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 266 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 345 (625)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 345 (625)
.++ .+++++...+...+.+..+++.+|.+|-++|+.++|...|+++++.+|+++.+++++|..|.
T Consensus 97 --------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 97 --------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred --------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 244 55556665666677788899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH--------------------H
Q 006937 346 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA--------------------Y 405 (625)
Q Consensus 346 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------------~ 405 (625)
.. +.++|+.++.+|+.. +...+++.++.+++.+.+..+|++.+. +
T Consensus 162 e~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~ 226 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLL 226 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHH
Confidence 99 999999999999876 666778888888888888888876543 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHH
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 443 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (625)
.-+-.+|...+++++++.+++.+++.+|+|..++..+.
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHH
Confidence 22337788889999999999999999999988877743
No 107
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.59 E-value=4.1e-11 Score=116.63 Aligned_cols=379 Identities=13% Similarity=0.151 Sum_probs=228.0
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
+..|+...+.+..+|+...-...|+++|..-|- +..+|-..-......+-.+-++..|++.++..|...+ .....
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e---eyie~ 178 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE---EYIEY 178 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH---HHHHH
Confidence 344555555566666666666666666655442 2334444444444555556666666666666665432 22334
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHH-------------------------------HHHHhHHHH
Q 006937 126 YKDEGRLVEAAESYHKALSAD-------PSYKPAAECLAI-------------------------------VLTDLGTSL 167 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~a~-------------------------------~~~~l~~~~ 167 (625)
+...+++++|.+.+...+..+ +.+...|..+.. ++..|+..|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 555666666666666655432 222222222221 233344555
Q ss_pred HHhCChHHHHHHHHHHHhhCCC---CHHHH-----HHHHHHHHHcC-------------CHHHHHHHHHHHH--------
Q 006937 168 KLAGNTQDGIQKYYEALKIDPH---YAPAY-----YNLGVVYSELM-------------QYDTALGCYEKAA-------- 218 (625)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~~~---~~~~~-----~~la~~~~~~~-------------~~~~A~~~~~~al-------- 218 (625)
.+.|.+++|...|++++..--. ...++ +.-..+...++ +.+-.+..|+..+
T Consensus 259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 5555555555555555443110 00000 00000000000 1111222222221
Q ss_pred ----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHH
Q 006937 219 ----LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA-VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 293 (625)
Q Consensus 219 ----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l 293 (625)
..+|++...|... +-...|+..+-+..|.++++ .+|... ....+.++..++..|...|+.+.|...|+++.
T Consensus 339 sVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 2234444444333 23334667777777777664 344432 34456677788888888999999999999998
Q ss_pred hhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHcCCHH
Q 006937 294 YYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------------------CAEACNNLGVIYKDRDNLD 351 (625)
Q Consensus 294 ~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------------------~~~~~~~la~~~~~~~~~~ 351 (625)
+..-.. ..+|...|..-....+++.|+.+++.+...-.. +..+|..++......|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 775433 567888888888899999999999888765211 2467778888888889999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHH---HHHHcCCHHHHHHHHH
Q 006937 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGV---LYRDAGSISLAIDAYE 426 (625)
Q Consensus 352 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~---~~~~~g~~~~A~~~~~ 426 (625)
.-...|++.+++.--.|....+.|..+....-++++.+.|++.+.+. |...++|...-. .-..--..+.|...|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999988889999999999999999999999999998885 444455543322 2223347889999999
Q ss_pred HHHhcCC
Q 006937 427 QCLKIDP 433 (625)
Q Consensus 427 ~al~~~p 433 (625)
+|++..|
T Consensus 575 qaL~~Cp 581 (835)
T KOG2047|consen 575 QALDGCP 581 (835)
T ss_pred HHHhcCC
Confidence 9999888
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.59 E-value=2.8e-13 Score=120.12 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=117.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVE 355 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~--~~~A~~ 355 (625)
.++.++++..++++++.+|++.+.|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 006937 356 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 356 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
.++++++.+|++..++..+|.++...|++++|+.+++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999887543
No 109
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.57 E-value=1.7e-10 Score=112.42 Aligned_cols=372 Identities=13% Similarity=0.121 Sum_probs=262.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHH
Q 006937 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-------PQNACAHTHCGIL 125 (625)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~ 125 (625)
..-......+-.+-++..|++.++.+|...+- ....+...+++++|.+.+...+..+ +.+-..|..+..+
T Consensus 143 lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee---yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl 219 (835)
T KOG2047|consen 143 LYLKFVESHGLPETSIRVYRRYLKVAPEAREE---YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL 219 (835)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH---HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence 34445566777889999999999999977544 3455778899999999999887653 4456677777766
Q ss_pred HHHcCCHHH---HHHHHHHHHhcCCCCH-HHHHHHHHHHHHhHHHHHHhCChHH--------------------------
Q 006937 126 YKDEGRLVE---AAESYHKALSADPSYK-PAAECLAIVLTDLGTSLKLAGNTQD-------------------------- 175 (625)
Q Consensus 126 ~~~~g~~~~---A~~~~~~al~~~~~~~-~~~~~~a~~~~~l~~~~~~~~~~~~-------------------------- 175 (625)
..+.-+.-. -..+++..+...++.. ..|..+|..|...|..-....-+++
T Consensus 220 is~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~ 299 (835)
T KOG2047|consen 220 ISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCV 299 (835)
T ss_pred HHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHH
Confidence 655433222 2234455555555432 2344455544443332222111222
Q ss_pred ----------------------HHHHHHHHHh------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 006937 176 ----------------------GIQKYYEALK------------IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE- 220 (625)
Q Consensus 176 ----------------------A~~~~~~~l~------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 220 (625)
....|+..+. .+|++..-|... +-...|+..+-+..|..+++.
T Consensus 300 ~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~v 377 (835)
T KOG2047|consen 300 AAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTV 377 (835)
T ss_pred HHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHcc
Confidence 2222333222 255555555443 334567788888889888763
Q ss_pred CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 221 RPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 221 ~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
+|. ....|..+|..|...|+.+.|...|+++.+..-.. ...++.++...|.......+++.|+.+.+++...
T Consensus 378 dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~---v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 378 DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT---VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc---hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 553 35688999999999999999999999998875443 3356778888888888899999999999988754
Q ss_pred CCC------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 296 NWH------------------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 357 (625)
Q Consensus 296 ~~~------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 357 (625)
-.. ...+|..++.+....|-++.....|++.+++.--.+....+.|..+....-+++|.+.|
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 211 13467788888889999999999999999999889999999999999999999999999
Q ss_pred HHHHccC--CCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 358 QMALSIK--PNFSQSLNNLGVV---YTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 358 ~~al~~~--~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
++.+.+. |...++|...-.. -+.-...+.|..+|+++++..|.. ..++...+..-.+-|--..|+..|++|-.
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999885 4445555543333 233447899999999999988732 24566677777888888899999998766
Q ss_pred cC
Q 006937 431 ID 432 (625)
Q Consensus 431 ~~ 432 (625)
.-
T Consensus 615 ~v 616 (835)
T KOG2047|consen 615 AV 616 (835)
T ss_pred cC
Confidence 43
No 110
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=1.8e-11 Score=105.80 Aligned_cols=185 Identities=17% Similarity=0.150 Sum_probs=143.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 006937 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (625)
Q Consensus 187 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (625)
.++....+-.+..+....|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+...+....
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 34445566667777788889999999999988888998888888899999999999999999999988888776555433
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 346 (625)
.+... +|+..+|++.+...++.++.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..+|.+++.
T Consensus 128 Ailka-------~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 128 AILKA-------QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHHH-------cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33333 45666888888888888888888888888888888888888888888888888888888888887777
Q ss_pred cC---CHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 006937 347 RD---NLDKAVECYQMALSIKPNFSQSLNNLGVVY 378 (625)
Q Consensus 347 ~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 378 (625)
+| ++.-|.++|.++++++|.+..+++.+-.+.
T Consensus 201 ~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 201 QGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 66 566778888888888886666666554443
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.55 E-value=1.3e-12 Score=114.07 Aligned_cols=177 Identities=23% Similarity=0.217 Sum_probs=127.4
Q ss_pred HHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006937 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 323 (625)
Q Consensus 244 A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 323 (625)
+...+-.....+|++..+ ..++..+.. .|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..+
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~-------~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYL-------RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHh-------cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344444444455554443 333333333 345555555556656666666666666777788888888888888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 006937 324 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 324 ~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
+++....|++.++|..+|.+|.+.|++++|...|.+++++.|+.+.+..++|..+.-.|+++.|..++..+....+.+..
T Consensus 124 rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 124 RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888777777788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~a 428 (625)
+..+++.+....|++.+|...-.+-
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhcccc
Confidence 8888888888888888887765443
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.55 E-value=1.4e-12 Score=114.04 Aligned_cols=177 Identities=17% Similarity=0.154 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 66 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (625)
.+...+-+....+|++..+ ..++..+...|+-+.+.....++...+|.+...+..+|......|++.+|+..++++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3666666667889999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006937 146 DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (625)
Q Consensus 146 ~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 225 (625)
.|++... +..+|.+|.+.|++++|...|.+++++.|+.+.+..++|..+.-.|+++.|..++..+....+.+.
T Consensus 130 ~p~d~~~-------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~ 202 (257)
T COG5010 130 APTDWEA-------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202 (257)
T ss_pred CCCChhh-------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch
Confidence 9999887 778888889999999999999999999999999999999999999999999999999999999899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 226 EAYCNMGVIYKNRGDLESAIACYER 250 (625)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~ 250 (625)
.+..+++.+....|++++|.....+
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999999999999999999887654
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.53 E-value=7.8e-13 Score=130.62 Aligned_cols=226 Identities=19% Similarity=0.169 Sum_probs=185.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 006937 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (625)
Q Consensus 188 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (625)
|........++..+...|-..+|+..+++ ...|.....+|...|+..+|..+..+-++.+|+ + .
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d-~-------~ 458 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPD-P-------R 458 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCc-c-------h
Confidence 33455667889999999999999999987 467777888999999999999988888884443 3 3
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 347 (625)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 347 (625)
.|..+|++.....-+++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 4555555544444555565555443 3456677777777889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
++++.|.++|..++.++|++.++|.+++..|...|+-.+|...++++++.+-++..+|.|.-.+..+.|.+++|++.|.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHhcCCCC
Q 006937 428 CLKIDPDS 435 (625)
Q Consensus 428 al~~~p~~ 435 (625)
.+.+.-+.
T Consensus 613 ll~~~~~~ 620 (777)
T KOG1128|consen 613 LLDLRKKY 620 (777)
T ss_pred HHHhhhhc
Confidence 88765443
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.53 E-value=3.1e-13 Score=113.56 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=101.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 321 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 321 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
..+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|..++++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 401 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
++..++.+|.++...|++++|+..|+++++++|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 888888888888888888888888888888888876543
No 115
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=2.3e-13 Score=121.02 Aligned_cols=117 Identities=29% Similarity=0.473 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (625)
++-+..-|.-+.+.++|.+|+..|.+|++++|.++..|.+.+.+|.++|+++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34556678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhcc
Q 006937 414 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 450 (625)
Q Consensus 414 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 450 (625)
.+|++++|++.|+++|+++|++...+.++-.+-.-+.
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988877655544333
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.50 E-value=1.8e-12 Score=128.10 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=192.3
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 239 (625)
...++..+...|-...|+..|++ ...|-....||...|+..+|..+..+-++ .|.++..|..+|.+.....
T Consensus 401 q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 34577788888999999999988 56777889999999999999999999998 6777888888888887777
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 006937 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 319 (625)
-|++|.++.+..- +.+...+|......++++++.+.++..++++|-....|+.+|.+..+.++++.|
T Consensus 472 ~yEkawElsn~~s-------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 472 LYEKAWELSNYIS-------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHHHhhhhh-------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7777776665432 223444555555678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006937 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (625)
Q Consensus 320 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (625)
.+.|..++...|++.++|++++..|...++-.+|...+++|++.+-++..+|.|.-.+....|.+++|++.+.+.+.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998763
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.48 E-value=8.9e-12 Score=130.14 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=103.4
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
......|.+++++..+|.+....|.+++|...++.+++..|++..+ ...++.++.+.+++++|+..+++++..
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a-------~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA-------FILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH-------HHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 3344466667777777777777777777777777777777777665 555556666667777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 006937 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (625)
Q Consensus 187 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (625)
+|+++..++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 7777777777777777777777777777777777777777777777777777777777777777776655543
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=1.9e-12 Score=108.77 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=113.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 006937 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (625)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (625)
+.+++++..+|++....+.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 006937 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 405 (625)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 405 (625)
++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999876643
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.47 E-value=1.6e-12 Score=106.18 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=77.1
Q ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006937 328 HFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 406 (625)
Q Consensus 328 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 406 (625)
.+. ++..+..+.+|..+...|++++|...|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 344 5556666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 407 NLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
++|.|+...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77777777777777777777777665
No 120
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=9.2e-13 Score=117.29 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=103.7
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
..++.+-..|..+++.++|.+|+..|.++|+++|.++..|.++|.+|.++|.++.|++.++.++.++|....+|..+|.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAA 153 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~ 153 (625)
|+.+|++.+|++.|+++++++|++...+
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHHH
Confidence 9999999999999999999999998653
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.45 E-value=2e-12 Score=121.36 Aligned_cols=259 Identities=18% Similarity=0.096 Sum_probs=191.8
Q ss_pred HHHHhCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006937 166 SLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (625)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 244 (625)
.++..|+|..++...+ ....++ ........+.+++..+|+++..+..+.. ..+....+...++..+...++.+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHH
Confidence 4456799999997776 223333 2355677889999999999877655543 2233345566677766665677777
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006937 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (625)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (625)
+..++..+......... .+....+.++...|++++|++.+.+. .+.+.......++...++++.|.+.++
T Consensus 86 l~~l~~~~~~~~~~~~~-----~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 86 LEELKELLADQAGESNE-----IVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHHHHHCCCTS---CHH-----HHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhccccccH-----HHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77766654332221111 12233445566689999999888764 567888889999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 006937 325 LAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (625)
Q Consensus 325 ~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (625)
.+.+.+.+..-.....+++....| ++.+|...|++..+..+.++..+..++.++..+|++++|.+.++++++.+|+++
T Consensus 156 ~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 156 NMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 999988887777777777777666 699999999999888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhh
Q 006937 403 EAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~ 438 (625)
+++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999998 66778888888899997644
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.45 E-value=2.4e-12 Score=120.81 Aligned_cols=168 Identities=14% Similarity=0.028 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (625)
+......|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+.+.+.+.. ...++.++.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~--l~qLa~awv 174 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI--LTQLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH--HHHHHHHHH
Confidence 445556677777788888888877653 5577777788888889999999988888887766643 333343333
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 006937 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (625)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 350 (625)
.+.. ..+++.+|..+|++..+..+..+..+..++.+++.+|++++|...+++++..+|.++.++.+++.+....|+.
T Consensus 175 ~l~~---g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 175 NLAT---GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHH---TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHh---CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 3210 0234566666666655555555556666666666666666666666666666666666666666665555555
Q ss_pred -HHHHHHHHHHHccCCCCH
Q 006937 351 -DKAVECYQMALSIKPNFS 368 (625)
Q Consensus 351 -~~A~~~~~~al~~~~~~~ 368 (625)
+.+.+++.+....+|+++
T Consensus 252 ~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 252 TEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CHHHHHHHHHCHHHTTTSH
T ss_pred hhHHHHHHHHHHHhCCCCh
Confidence 444455555555555544
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.42 E-value=1e-11 Score=101.46 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=100.9
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+.+-+.++..|..++..|++++|...|+-+...+|.+...|+++|.|+..+|++++|+..|.+++.++|+++..+...|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKP 151 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (625)
|++..|+.+.|.+.|+.++......+.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999999998754433
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.39 E-value=1.8e-10 Score=105.48 Aligned_cols=183 Identities=11% Similarity=0.037 Sum_probs=136.3
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHH---HHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---AC 117 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 117 (625)
...+++.++..|..++..|+|++|+..|++++...|....+ .+.+|.++++.+++++|+..+++.++.+|++ +.
T Consensus 28 ~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 28 PDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 34678889999999999999999999999999999988654 4899999999999999999999999999876 45
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHH
Q 006937 118 AHTHCGILYKDEG---------------R---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (625)
Q Consensus 118 ~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~ 179 (625)
+++.+|.++...+ + ..+|+..|++.++..|++.-+.... .. +..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~----~r--------------l~~ 169 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDAT----KR--------------LVF 169 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHH----HH--------------HHH
Confidence 7888888764443 1 3568899999999999875432111 00 011
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 180 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYER 250 (625)
Q Consensus 180 ~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (625)
++..+ ..--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|......
T Consensus 170 l~~~l------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 170 LKDRL------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 11111 2223456777777777777777777777776653 56677777777777777777766544
No 125
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=3.6e-10 Score=100.02 Aligned_cols=279 Identities=19% Similarity=0.162 Sum_probs=214.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
.+..+|.+|++++..-.+.+|.+... +..+|.+|+...++..|..+|++.-...|......+..+..+++.+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAg-------LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAG-------LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 56778999999999999988877665 77788899999999999999999999999988888889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHH
Q 006937 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (625)
+..|+...........-.......-+.+....+++..+....++.-.. +. +....+.|-+..+.|+++.|+
T Consensus 94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~-------Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NE-------ADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cc-------cchhccchheeeccccHHHHH
Confidence 999998887765442223345555566777778888877766654321 11 234455666667789999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC----------------C---------HHHH
Q 006937 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPH----------------C---------AEAC 337 (625)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~----------------~---------~~~~ 337 (625)
+-|+.+++...-.+-.-++++.++++.++++.|+++..+.++. .|. + .+++
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 9999999999888899999999999999999999998887764 232 1 3566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006937 338 NNLGVIYKDRDNLDKAVECYQMALSIKPN-----FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (625)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (625)
+..+-++++.++++.|.+.+.. +-|. ++..+.+++..- ..+++.+...-++-.+.++|--.+.+.++-.+|
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLlly 320 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLY 320 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 7778888999999988776543 3332 355677776543 346677788888888888997778888998899
Q ss_pred HHcCCHHHHHHHH
Q 006937 413 RDAGSISLAIDAY 425 (625)
Q Consensus 413 ~~~g~~~~A~~~~ 425 (625)
.+..-++-|.+.+
T Consensus 321 CKNeyf~lAADvL 333 (459)
T KOG4340|consen 321 CKNEYFDLAADVL 333 (459)
T ss_pred hhhHHHhHHHHHH
Confidence 9887777776654
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.32 E-value=7.8e-10 Score=105.30 Aligned_cols=156 Identities=23% Similarity=0.238 Sum_probs=139.2
Q ss_pred CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
+|....+++..+..++..|++++|+..+...++..|+|+..+...+.++...|+..+|.+.+++++...|.....
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l----- 376 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL----- 376 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH-----
Confidence 377889999999999999999999999999999999999999999999999999999999999999999998554
Q ss_pred HHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006937 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (625)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 237 (625)
..++|..+.+.|++.+|+..++..+..+|+++..|..|+..|..+|+-.+|... .+..+..
T Consensus 377 --~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~ 437 (484)
T COG4783 377 --QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYAL 437 (484)
T ss_pred --HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHh
Confidence 677788888889999999999999999999999999999999999987776544 4566778
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 006937 238 RGDLESAIACYERCLAVSPN 257 (625)
Q Consensus 238 ~g~~~~A~~~~~~al~~~~~ 257 (625)
.|++++|+..+..+.+....
T Consensus 438 ~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 438 AGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred CCCHHHHHHHHHHHHHhccC
Confidence 89999999999998877643
No 127
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=7.1e-09 Score=104.01 Aligned_cols=327 Identities=17% Similarity=0.182 Sum_probs=221.5
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHH--------HHHhc---CCCcHHHHHHHHHHH
Q 006937 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS--------EAVKL---DPQNACAHTHCGILY 126 (625)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~---~p~~~~~~~~la~~~ 126 (625)
|...|+.+.|.+..+-+- +..+|-++|....+..+.+-|.-++- ++++. +|+ +.-...+.+.
T Consensus 738 yvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHH
Confidence 345688888877766542 34678888888777777766655442 12221 333 3334567778
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
...|..++|..+|++.-+ +-.+-..|...|.+++|.++-+.-=.+ .--..|++.|..+...++
T Consensus 811 ieLgMlEeA~~lYr~ckR---------------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhcc
Confidence 889999999999998755 333455677789999998876542222 124578899999999999
Q ss_pred HHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 006937 207 YDTALGCYEKA----------ALERP----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (625)
Q Consensus 207 ~~~A~~~~~~a----------l~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (625)
.+.|+++|+++ +..+| .+...|...|..+...|+.+.|+.+|..+-.
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------------- 940 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------------- 940 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------------
Confidence 99999999986 23333 3466788889999999999999999988643
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCC-------
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHC------- 333 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~------- 333 (625)
++.+-++..-+|+.++|-.+.++. .+..+.+.+|+.|...|++.+|+..|.++-.. ...+
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 444555666677888887766543 45667788888888888888888888766433 1111
Q ss_pred -------HHHHHHHHHHHHHcC-CHHHHHHHHHHH------Hc-----------------cCC-CCHHHHHHHHHHHHHc
Q 006937 334 -------AEACNNLGVIYKDRD-NLDKAVECYQMA------LS-----------------IKP-NFSQSLNNLGVVYTVQ 381 (625)
Q Consensus 334 -------~~~~~~la~~~~~~~-~~~~A~~~~~~a------l~-----------------~~~-~~~~~~~~la~~~~~~ 381 (625)
+.-....|..|...| +...|..+|.+| ++ ++| .++..+..-+..+...
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENN 1093 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhH
Confidence 111222334444444 555555554432 21 133 4577888888889999
Q ss_pred CCHHHHHHHHHHH------HHh----------------CCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 382 GKMDAAAEMIEKA------IAA----------------NPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 382 g~~~~A~~~~~~a------l~~----------------~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (625)
.+|++|...+-.+ +.+ .|. ...++..+|.++.++|.|..|.+-|.+|
T Consensus 1094 ~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1094 QQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 9999998766443 332 111 1357889999999999999998888765
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.30 E-value=7.4e-11 Score=115.24 Aligned_cols=109 Identities=20% Similarity=0.131 Sum_probs=103.1
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (625)
..+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++.++|+++.+++.+|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 129 EGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
.|++++|+..|+++++++|++......+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999988754433
No 129
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.30 E-value=5.1e-10 Score=100.31 Aligned_cols=175 Identities=17% Similarity=0.181 Sum_probs=121.8
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH---HHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (625)
.+++.++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467889999999999999999999999999998875 47899999999999999999999999999999864 578
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC
Q 006937 120 THCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (625)
Q Consensus 120 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 188 (625)
+.+|.+++... ...+|+..|+..+...|++..+.... +-+..+...+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~------------------~~l~~l~~~l---- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAK------------------KRLAELRNRL---- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHH------------------HHHHHHHHHH----
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHH------------------HHHHHHHHHH----
Confidence 88888876543 34589999999999999976542110 0011111111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 006937 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESA 244 (625)
Q Consensus 189 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A 244 (625)
..--+.+|..|.+.|.+..|+..++.+++..|+. .+++..++..+..+|..+.|
T Consensus 141 --a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 141 --AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp --HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 2233445667777777777777777777776664 34566666777777766643
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=3.9e-10 Score=107.29 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=143.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 006937 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (625)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (625)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++.++|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCC
Q 006937 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 452 (625)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 452 (625)
++.+.|++.+|+..++..+..+|+++..|..||..|..+|+..+|...+.....+.-+-..+......+......+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~ 458 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLG 458 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999999988887777766655555444333
No 131
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.27 E-value=1.3e-10 Score=113.47 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC
Q 006937 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (625)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (625)
+...|..++..|++++|+..|+++++++|++..++..+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34456666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006937 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (625)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (625)
++++|+..|+++++++|++..+...++.+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 777777777777777777777777766665544
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.26 E-value=2.2e-09 Score=98.45 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=134.0
Q ss_pred CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006937 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA---HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (625)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 156 (625)
.++..++..|..++..|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++..|+++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---- 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---- 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----
Confidence 467788899999999999999999999999999988654 4899999999999999999999999999998776
Q ss_pred HHHHHHhHHHHHHhC------------------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 157 AIVLTDLGTSLKLAG------------------NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (625)
Q Consensus 157 a~~~~~l~~~~~~~~------------------~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 218 (625)
..+++.+|.++...+ ...+|+..|++.++..|++..+ .+|...+..+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l- 170 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL- 170 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH-
Confidence 445666666643332 1356888899999998886432 1222111111
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhchh
Q 006937 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTK 275 (625)
Q Consensus 219 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~~ 275 (625)
...-..--+.+|..|.+.|.+..|+.-++.+++..|+.+ ++...+..++..+|..
T Consensus 171 --~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 171 --KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred --HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 111133445789999999999999999999999998754 5666777788887754
No 133
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.23 E-value=6.1e-09 Score=94.90 Aligned_cols=280 Identities=14% Similarity=0.163 Sum_probs=161.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-----HHHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNL 197 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~l 197 (625)
..+...+|.+++++..--..+....+..+. ..+-.++.+++..+.+..++.+++.+-...+.+.... ..+...+
T Consensus 50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds-~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 50 VTAHSEMGRYKEMLKFAVSQIDTARELEDS-DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM 128 (518)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence 344555556555555443333332221111 1223447778888888888999998888877763322 3567779
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHH
Q 006937 198 GVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIA 268 (625)
Q Consensus 198 a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~ 268 (625)
+..+..++.++++++.|+++++...++ ..++..+|.++....++++|.-+..++.++..... ........+
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 999999999999999999999875432 35788999999999999999999999987754322 111122334
Q ss_pred HHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 269 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (625)
Q Consensus 269 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 348 (625)
++.++..+..+|..-.|.++.+++.++.-...+ .+-.......+|.+|...|
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd----------------------------ra~~arc~~~~aDIyR~~g 260 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGD----------------------------RALQARCLLCFADIYRSRG 260 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC----------------------------hHHHHHHHHHHHHHHHhcc
Confidence 444444455555555555555555433111000 0111233344444444444
Q ss_pred CHHHHHHHHHHHHccCCC------CHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHhCCCc------HHHHHHHHHH
Q 006937 349 NLDKAVECYQMALSIKPN------FSQSLNNLGVVYTVQGKMDA-----AAEMIEKAIAANPTY------AEAYNNLGVL 411 (625)
Q Consensus 349 ~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~------~~~~~~la~~ 411 (625)
+.+.|..-|+.|...-.. ..+++...+.++....-..+ |++.-++++++.... ...+..++.+
T Consensus 261 d~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~i 340 (518)
T KOG1941|consen 261 DLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASI 340 (518)
T ss_pred cHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444444444444433111 12234444444443333222 666666665553221 3456677777
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 006937 412 YRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~ 431 (625)
|..+|.-++=...+.++-+.
T Consensus 341 Yrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 341 YRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHhccchhHHHHHHHHHHHH
Confidence 77777777766666665444
No 134
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.21 E-value=2.6e-09 Score=95.69 Aligned_cols=175 Identities=23% Similarity=0.210 Sum_probs=125.0
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
.+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.++..|+++.. .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----D 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h
Confidence 46789999999999999999999999999998875 5689999999999999999999999999999997754 3
Q ss_pred HHHHHhHHHHHHh-----------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006937 158 IVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (625)
Q Consensus 158 ~~~~~l~~~~~~~-----------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 226 (625)
.+++.+|.+++.. +...+|+..|+..+...|++..+- +|...+..+-. .-..
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~ 142 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHH
Confidence 3455555554433 334577777888887777754331 22221111110 1133
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhchhh
Q 006937 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKV 276 (625)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~~~ 276 (625)
--+.+|..|.+.|.+..|+..++.+++..|+.. .+...+..++..+|...
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 456789999999999999999999999999976 45666777888887543
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.19 E-value=6e-10 Score=91.22 Aligned_cols=105 Identities=24% Similarity=0.303 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNL 408 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 408 (625)
..++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+.+|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456777777777788888888888877777665 4577778888888888888888888888777664 5677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 409 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
|.++..+|++++|..+++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888776544
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.18 E-value=2e-06 Score=88.15 Aligned_cols=200 Identities=18% Similarity=0.078 Sum_probs=138.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (625)
.+.-..-....+++.+|+....++++..|+..-+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..+|
T Consensus 12 r~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 12 RLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 34444556788999999999999999999999999999999999999999998888877778888889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH-----------------
Q 006937 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA----------------- 193 (625)
Q Consensus 131 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~----------------- 193 (625)
++++|..+|++++..+|+ .+. +..+-.+|.+.+.|.+-.+.--+..+..|+++..
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eel-------l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EEL-------LYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcc
Confidence 999999999999999998 443 2222333333333333222222222222222111
Q ss_pred -----------------------------HHHHHHHHHHcCCHHHHHHHHHHH-HH-hCCCCHHHHHHHHHHHHHcCCHH
Q 006937 194 -----------------------------YYNLGVVYSELMQYDTALGCYEKA-AL-ERPMYAEAYCNMGVIYKNRGDLE 242 (625)
Q Consensus 194 -----------------------------~~~la~~~~~~~~~~~A~~~~~~a-l~-~~~~~~~~~~~la~~~~~~g~~~ 242 (625)
....-.++..+|++++|...+..- .+ ..+.+..........+...+++.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 111223445567777777777322 22 33334444455566677777888
Q ss_pred HHHHHHHHHHhcCCCc
Q 006937 243 SAIACYERCLAVSPNF 258 (625)
Q Consensus 243 ~A~~~~~~al~~~~~~ 258 (625)
+-.+...+++...+++
T Consensus 244 ~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 244 ELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 7777777777777775
No 137
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.18 E-value=2e-09 Score=102.11 Aligned_cols=196 Identities=22% Similarity=0.293 Sum_probs=125.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 006937 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 310 (625)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 310 (625)
.|..|...+++++|...|.++.+...... .....+..+...+.++... ++++|+.++++++ .+|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~-~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~--------------~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLG-DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI--------------EIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH--------------HHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH--------------HHH
Confidence 35666777777777777777755432211 1222344444444444333 6666666666654 344
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHccCCC--C----HHHHHHHHHHHHHcCC
Q 006937 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKPN--F----SQSLNNLGVVYTVQGK 383 (625)
Q Consensus 311 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~g~ 383 (625)
...|++..| ...+..+|.+|... |++++|+++|++|+++... . ..++..+|.++...|+
T Consensus 105 ~~~G~~~~a--------------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 105 REAGRFSQA--------------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHCT-HHHH--------------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred HhcCcHHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 555555555 44556678888888 8999999999999887322 1 3477889999999999
Q ss_pred HHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH--hhhccCCCc
Q 006937 384 MDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA--MNYINEGHD 454 (625)
Q Consensus 384 ~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--~~~~~~~~~ 454 (625)
|++|++.|++.....-++ ...++..+.|+...|+...|...+++....+|.........++. +..+..++.
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 999999999988753221 24566778899999999999999999999999887766554332 333445554
Q ss_pred hH
Q 006937 455 DK 456 (625)
Q Consensus 455 ~~ 456 (625)
+.
T Consensus 251 e~ 252 (282)
T PF14938_consen 251 EA 252 (282)
T ss_dssp CC
T ss_pred HH
Confidence 44
No 138
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.18 E-value=1.1e-09 Score=103.90 Aligned_cols=181 Identities=22% Similarity=0.256 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC--C----cHHHHHHHHHHHHHcCCHHHHH
Q 006937 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--Q----NACAHTHCGILYKDEGRLVEAA 136 (625)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~ 136 (625)
+|++|..+|+++ |.+|...|++++|...|.++....- + -...+...+.++... ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 556666665554 5667777777777777777765421 1 133455556666555 999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh-CChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHH
Q 006937 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-GNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDT 209 (625)
Q Consensus 137 ~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~-~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~ 209 (625)
.+|++++.+.-.... ....+.++..+|.++... |++++|+++|+++++.... ....+..+|.++...|+|++
T Consensus 95 ~~~~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 95 ECYEKAIEIYREAGR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 999999886433222 233477789999999998 9999999999999987321 24567889999999999999
Q ss_pred HHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 006937 210 ALGCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (625)
Q Consensus 210 A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (625)
|++.|++.....-++ ...+...+.+++..|++..|...+++....+|...
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 999999998753221 23456778899999999999999999999988654
No 139
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.18 E-value=3.3e-07 Score=84.80 Aligned_cols=297 Identities=19% Similarity=0.109 Sum_probs=206.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q 006937 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVV 200 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~ 200 (625)
-|.+....|+-..|.+.-.++-++-..+.+.. +...-+......|+++.|.+-|+.++. +|+. .-.+..|-.-
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepL-----IhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle 163 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPL-----IHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE 163 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHH-----HHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence 35566677888899888888875555544432 233445666778999999999998875 3432 2223333333
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHhchhhhhc
Q 006937 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 279 (625)
....|..+.|..+-+.+....|.-+.++...-...+..|+++.|+++.+......--... .....+..+...+ .....
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA-~s~ld 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA-MSLLD 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH-HHHhc
Confidence 457899999999999999999999998888888899999999999998876543211111 1111121121111 11123
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 359 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 359 (625)
.+...|...-.++.++.|+....-..-+..++..|+..++-.+++.+.+..|.- . ++.+|....--+.++.-+++
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D----IALLYVRARSGDTALDRLKR 317 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHHH
Confidence 467788888888888888888888888888888888888888888888877652 2 33334433333344444443
Q ss_pred ---HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 006937 360 ---ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLKI 431 (625)
Q Consensus 360 ---al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 431 (625)
...+.|++.+.....+..-+.-|++..|..--+.+....|. ..++..|+.+-... |+-.++..++-++++-
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 34557888888888888888888888888888888888776 55667777777665 8888888888888764
No 140
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.2e-09 Score=98.69 Aligned_cols=123 Identities=22% Similarity=0.251 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 006937 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIE 392 (625)
Q Consensus 316 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~ 392 (625)
.+.-+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4556666777778888888888888888888888888888888888888888888888888876543 4678888999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 393 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
+++..+|++..+.+.||..++..|++.+|...+++.++..|.+..-
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 9999999999999999999999999999999999999988876543
No 141
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.16 E-value=2.5e-08 Score=105.82 Aligned_cols=257 Identities=16% Similarity=0.115 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHhhHHHHHHHhchhhhhcCCHHHHH
Q 006937 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (625)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (625)
.+..+-|++.+..+|+..-.|......+.+.++.++|.+..++++.. ++...+...++-.+|.++-..| |.-+...
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHH
Confidence 34556777888888888888888888888889999999999988854 4555555555555666554443 4566677
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 006937 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 366 (625)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 366 (625)
+.|+++.+... ....+..|..+|...+++++|.++|+..++...+...+|..+|..++.+.+-+.|...+++|++.-|.
T Consensus 1518 kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1518 KVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 78888876543 34578889999999999999999999999998888999999999999999999999999999999888
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 006937 367 --FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (625)
Q Consensus 367 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (625)
+.+.....|.+-++.|+.+.+...|+-.+..+|...+.|..+...-.+.|+.+.+...|++++.+.=.-.....-+-.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999999875433333222222
Q ss_pred HhhhccCCCchHHHHHHHHHHHHH
Q 006937 445 AMNYINEGHDDKLFEAHRDWGKRF 468 (625)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~ 468 (625)
-+.|-...-.++..+..+.-+..+
T Consensus 1677 wLeyEk~~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred HHHHHHhcCchhhHHHHHHHHHHH
Confidence 333433322334444444434333
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.16 E-value=9.6e-10 Score=90.00 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=97.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH 121 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (625)
++.++..|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5678999999999999999999999999998876 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 006937 122 CGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 152 (625)
+|.++...|++++|+..+++++...|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999997654
No 143
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.16 E-value=8.8e-09 Score=93.88 Aligned_cols=306 Identities=16% Similarity=0.164 Sum_probs=190.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh----CCC--CHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----DPH--YAP 192 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~~~--~~~ 192 (625)
....|.-++...++++|+..+.+.+..-.+...- -..+-.+..+...+|.+++++..--..+.. +.. ..+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~R----f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGR----FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHH----HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777777777777776643332111 112333445555666666666543333222 111 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHH
Q 006937 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (625)
Q Consensus 193 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 267 (625)
++.+++..+....++.+++.+-+..+...... ......++..+..++.++++++.|+++++...++.+...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L---- 160 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML---- 160 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee----
Confidence 67777777777777777777776666543222 245556777777777777777777777765443322111
Q ss_pred HHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----------CHHHH
Q 006937 268 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----------CAEAC 337 (625)
Q Consensus 268 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~ 337 (625)
...++..+|.++....++++|.-+..++.++... ...++
T Consensus 161 -------------------------------Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 161 -------------------------------ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred -------------------------------eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 1234555556666666666666666655554211 13456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHH
Q 006937 338 NNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAY 405 (625)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~ 405 (625)
+.++..+..+|..-.|.++.+++.++. +........+|.+|...|+.+.|..-|+++...... ..+++
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al 289 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEAL 289 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 778888888899999999988887762 334567889999999999999999999999876332 24577
Q ss_pred HHHHHHHHHcCCHHH-----HHHHHHHHHhcCCCC----hhhhhhHHHHhhhccCCCchHHHHHHHH
Q 006937 406 NNLGVLYRDAGSISL-----AIDAYEQCLKIDPDS----RNAGQNRLLAMNYINEGHDDKLFEAHRD 463 (625)
Q Consensus 406 ~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (625)
...+.++....-..+ |+++-++++++...- ........++..|-..|..++.-....+
T Consensus 290 ~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 290 DGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 777888776655555 888888888875433 2233344567777666665554444333
No 144
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.15 E-value=1.7e-09 Score=94.25 Aligned_cols=123 Identities=18% Similarity=0.215 Sum_probs=100.9
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCC--HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHH
Q 006937 59 RSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLV 133 (625)
Q Consensus 59 ~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 133 (625)
+-.+.|..+...+..+++.++.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|+++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 44555777777777776666555 5677999999999999999999999999887653 458999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHH
Q 006937 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (625)
Q Consensus 134 ~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~ 181 (625)
+|+..+++++.+.|.....+..++.++..+|..+...|+++.|+..+.
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 999999999999999998888888888888888778888775554443
No 145
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.14 E-value=3.8e-09 Score=89.22 Aligned_cols=104 Identities=20% Similarity=0.241 Sum_probs=96.2
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006937 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (625)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 236 (625)
+..++..|..|-..|-+.-|.-.|.+++.+.|+.+.++..+|..+...|+++.|.+.|...++++|.+..+..+.|..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 55578888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHH
Q 006937 237 NRGDLESAIACYERCLAVSPNFEI 260 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~ 260 (625)
--|++.-|.+-+.+..+.+|+++-
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChH
Confidence 999999999999999999998874
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.14 E-value=2.7e-10 Score=82.43 Aligned_cols=67 Identities=43% Similarity=0.691 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 006937 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 433 (625)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 433 (625)
++..|..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677777777777777778888888877777777778888888888877 67788888888877776
No 147
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.1e-09 Score=95.92 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=114.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVEC 356 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~---~~~~A~~~ 356 (625)
...+..+.-++..+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++..+. ...++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 357777888889999999999999999999999999999999999999999999999999999888754 56899999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 006937 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 402 (625)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 402 (625)
+++++..+|.+..+.+.||..++..|+|.+|...++..++..|.+.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999987654
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.11 E-value=1.3e-09 Score=85.33 Aligned_cols=99 Identities=38% Similarity=0.623 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006937 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (625)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (625)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777777777888888888877777777777777888888888888888888888887777777788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 006937 416 GSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 416 g~~~~A~~~~~~al~~~p~ 434 (625)
|++++|...+.++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888777663
No 149
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.10 E-value=2.8e-09 Score=92.83 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 410 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 410 (625)
...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.....+.++|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3444555555555555555555555555554432 2355556666666666666666666666665555555555555
Q ss_pred HHH-------HcCCHH-------HHHHHHHHHHhcCCCChhh
Q 006937 411 LYR-------DAGSIS-------LAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 411 ~~~-------~~g~~~-------~A~~~~~~al~~~p~~~~~ 438 (625)
++. .+|+++ +|+.+|++++..+|++...
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence 555 555544 6666777788888876543
No 150
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.09 E-value=2.6e-08 Score=84.27 Aligned_cols=203 Identities=18% Similarity=0.192 Sum_probs=135.4
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 160 (625)
.+..++..|..|-..|-+.-|...|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|.+.-+ .
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya-------~ 136 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-------H 136 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH-------H
Confidence 345677888888889999999999999999999999999999999999999999999999999999988766 5
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006937 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (625)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 240 (625)
.+.|..++.-|++.-|.+-+.+-.+.+|+++---..+-. -...-+..+|...+.+-.+...+....+...+.. .|+
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---Lgk 212 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGK 212 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---Hhh
Confidence 666777777799999999998888888888743222211 2233456666655443333222222333322222 232
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
..+ ...++++..-..++...-..+..+++-+|..+...|+.++|...|+-++..
T Consensus 213 iS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 213 ISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 221 233444444444444444455556666666666666666666666666543
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.09 E-value=8.8e-09 Score=87.05 Aligned_cols=117 Identities=22% Similarity=0.174 Sum_probs=97.2
Q ss_pred hcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHH
Q 006937 312 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD 385 (625)
Q Consensus 312 ~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~ 385 (625)
..++...+...++..++.+|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5788888888888888888887 5677788999999999999999999999877654 347888999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 386 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (625)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (625)
+|+..++.. ...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999998663 3344456788889999999999999999999875
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.08 E-value=4.1e-09 Score=92.12 Aligned_cols=119 Identities=26% Similarity=0.398 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 006937 298 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 374 (625)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 374 (625)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.++++++...|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 345677888888888888888888888888776553 46788888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 375 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 375 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
|.++...|+...+...++.++. .+++|.+++++++..+|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 8888888887777766665543 26788999999999999874
No 153
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.08 E-value=8.1e-09 Score=95.21 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=97.9
Q ss_pred cchHhHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC---cHHH
Q 006937 46 FEGKDALSYANIL-RSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACA 118 (625)
Q Consensus 46 ~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 118 (625)
.+....+..|..+ +..|+|++|+..|+++++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4567888888877 66899999999999999999998 579999999999999999999999999998887 4788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 152 (625)
++.+|.++...|++++|...|+++++..|+...+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999999998755
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.06 E-value=7.3e-10 Score=80.18 Aligned_cols=67 Identities=36% Similarity=0.602 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 006937 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANP 399 (625)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 399 (625)
++..|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45666677777777777777777777777777777777777777777777 57777777777777665
No 155
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=9.7e-06 Score=77.42 Aligned_cols=385 Identities=13% Similarity=0.073 Sum_probs=244.0
Q ss_pred hHhHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCC---HHHHHhHHHHH-HHhcCHHHHHHHHHHHHhcC---CCc---
Q 006937 48 GKDALSYANILRSRN--KFVDALALYEIVLEKDSGN---VEAHIGKGICL-QMQNMGRLAFDSFSEAVKLD---PQN--- 115 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~~--- 115 (625)
++.++.+|+.+...| +...++++++..+...|.+ +.....+|.++ ....+.+.|...++++..+. |..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 567788888888888 8899999999888877654 34566677664 45678888999998887653 222
Q ss_pred -HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH----------
Q 006937 116 -ACAHTHCGILYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA---------- 183 (625)
Q Consensus 116 -~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~---------- 183 (625)
..+...++.+|.... .+..|...+++++++..+.+.. -...++.++.......++..|++.+.-.
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w---sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ 163 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW---SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFP 163 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhH
Confidence 345677788887776 7888888899998887766532 2334667777777777777777654211
Q ss_pred ---------------------------------Hhh---CCCCH----HHHHHHHH-HHHHcCCHHHHHHHHHHHHH---
Q 006937 184 ---------------------------------LKI---DPHYA----PAYYNLGV-VYSELMQYDTALGCYEKAAL--- 219 (625)
Q Consensus 184 ---------------------------------l~~---~~~~~----~~~~~la~-~~~~~~~~~~A~~~~~~al~--- 219 (625)
.+. +|..- ..+..+-. .|...|+...+...+++.-+
T Consensus 164 ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siq 243 (629)
T KOG2300|consen 164 YLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQ 243 (629)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHh
Confidence 110 11100 11122222 23345555555555544321
Q ss_pred h-CCC------------CHH-----------HHHHHHH--HHHHcCCHHHHHHHHHHHHhcCCCcHH-------HHhhHH
Q 006937 220 E-RPM------------YAE-----------AYCNMGV--IYKNRGDLESAIACYERCLAVSPNFEI-------AKNNMA 266 (625)
Q Consensus 220 ~-~~~------------~~~-----------~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~ 266 (625)
. .+. .+. ++..+-. .-...|-+++|.++-++++........ ......
T Consensus 244 tist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km 323 (629)
T KOG2300|consen 244 TISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKM 323 (629)
T ss_pred ccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 1 110 011 1111111 112346677788777777655322111 111112
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-C--
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYY---NWH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C-- 333 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~---~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~-- 333 (625)
..+..+.-+....|++.+|++....+.+. .|. .+.....+|......+.++.|...|..+.+.-.. +
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 22333344445578999998888777654 333 2456778888888889999999999999887433 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-c-
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-Y- 401 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~- 401 (625)
+.+..++|.+|...++-+.--+.++. +.|.+ ..+++..|...+.++++.||...+.+.++.... +
T Consensus 404 a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~ 480 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL 480 (629)
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence 44556889999998776554444443 33332 336777888888999999999999999987521 1
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 402 ----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 402 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
.-.+..|+.+....|+..++.+..+-++++...-++.
T Consensus 481 ~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di 521 (629)
T KOG2300|consen 481 NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI 521 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc
Confidence 3356678899999999999999999888775444433
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.05 E-value=3.1e-09 Score=83.15 Aligned_cols=99 Identities=31% Similarity=0.432 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (625)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 006937 130 GRLVEAAESYHKALSADPS 148 (625)
Q Consensus 130 g~~~~A~~~~~~al~~~~~ 148 (625)
|++++|...+.++++..|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999987763
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.04 E-value=6.1e-10 Score=84.06 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=73.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCC--CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 60 SRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (625)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (625)
.+|+|++|+..++++++.+|. +...++.+|.|++..|++++|+..+++ .+.++.+....+.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 006937 138 SYHKA 142 (625)
Q Consensus 138 ~~~~a 142 (625)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.04 E-value=1.3e-08 Score=103.62 Aligned_cols=143 Identities=22% Similarity=0.197 Sum_probs=119.0
Q ss_pred hCCCCHHHH--HHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 006937 295 YNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--------NLDKAVECYQMAL 361 (625)
Q Consensus 295 ~~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al 361 (625)
..|.+..+| +..|.-+...++ ...|+.+|+++++++|+++.++..++.++.... +...+....++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345555544 455666655544 789999999999999999999999888776542 3456667777766
Q ss_pred cc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 362 SI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 362 ~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
.+ +|..+.++..+|..+...|++++|...+++++.++|+ ..+|..+|.++...|++++|++.|++|+.++|.++..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 64 7777889999999999999999999999999999994 8899999999999999999999999999999998853
No 159
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.04 E-value=8.5e-07 Score=83.14 Aligned_cols=224 Identities=31% Similarity=0.410 Sum_probs=161.5
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHhhHHHHHHHhchhhhhc
Q 006937 204 LMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLA--VSPNFEIAKNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 204 ~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (625)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+... ..+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-------EALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-------HHHHHHHHHHHHH
Confidence 34455555555555555554 255566666666666666666666666654 233322 2333334444444
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVE 355 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~ 355 (625)
+++..++..+..++...+.........+. ++...|+++.|...+.+++...| .....+...+..+...+++++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 55666666666666666555444444455 78888889999998888877666 356666677777888889999999
Q ss_pred HHHHHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 356 CYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 356 ~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
.+.+++...+. ....+..++..+...+++++|...+..++...|.....+..++..+...+..+++...+.+++...|.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999888 68889999999999999999999999999998887777888888888777899999999999999887
No 160
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.04 E-value=1.7e-05 Score=77.04 Aligned_cols=419 Identities=12% Similarity=0.037 Sum_probs=241.7
Q ss_pred ccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-
Q 006937 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH- 121 (625)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~- 121 (625)
..+.+.+.|..+.+.+..+ .+++..+.|++.+...|..+.+|.......+...+|+.-..+|.+++..--+ .+.|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHH
Confidence 3456666676666666655 7777777777777777777777777777777777777777777766653221 233322
Q ss_pred HHHHHHHcCCHHHHHHHHHHH----HhcCCCCHHHHHHHHHHHHHhHHH---------HHHhCChHHHHHHHHHHHhhCC
Q 006937 122 CGILYKDEGRLVEAAESYHKA----LSADPSYKPAAECLAIVLTDLGTS---------LKLAGNTQDGIQKYYEALKIDP 188 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~a~~~~~l~~~---------~~~~~~~~~A~~~~~~~l~~~~ 188 (625)
+..+-...|+...+....-++ +....-+... ..+|...+.. +..+.+.+.-.+.|++++..--
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s----~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKS----YSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCccc----chhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 222333334443333332222 2222212111 1122222221 1222355556667777776433
Q ss_pred CCHHH-HHH-----------HH--HHHHHcCCHHHHHHHHHHHHHh-------CCC-----------CHHHHHHHHHHHH
Q 006937 189 HYAPA-YYN-----------LG--VVYSELMQYDTALGCYEKAALE-------RPM-----------YAEAYCNMGVIYK 236 (625)
Q Consensus 189 ~~~~~-~~~-----------la--~~~~~~~~~~~A~~~~~~al~~-------~~~-----------~~~~~~~la~~~~ 236 (625)
.+.+- |.. .| .+-.....|..|...+++.... +|. ..+.|.++...-.
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 33221 111 11 1122233455666666555432 111 0122333322221
Q ss_pred HcC------C--HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCC-------HHHHHHHHHHHHhhCCC-CH
Q 006937 237 NRG------D--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-------INQGVAYYKKALYYNWH-YA 300 (625)
Q Consensus 237 ~~g------~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~l~~~~~-~~ 300 (625)
..+ . -..-.-.+++++...+-.++.|+..+..+...+.++...|+ .+++..+|++++..... +.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 111 1 11233456777777777888888888888777777666665 45667777777654322 33
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 006937 301 DAMYNLGVAYGEMLK---FDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 376 (625)
Q Consensus 301 ~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 376 (625)
..++.++..-...-+ ++..-..+++++.+...+ .-++..+-..-.+..-.+.|...|.++-+..-....++..-|.
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 344455444333333 677777888888764333 3456666666667777889999999998765444344444444
Q ss_pred H-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhhhhHHHHhhhccCCC
Q 006937 377 V-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRLLAMNYINEGH 453 (625)
Q Consensus 377 ~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~ 453 (625)
+ |...++..-|...|+-.++..++.+..-......+..+|+-..|...|++++.. .|+...-.+...+..- ..-|+
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE-S~vGd 487 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE-SNVGD 487 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH-Hhccc
Confidence 3 567899999999999999999999998888889999999999999999999987 5555544444444322 23456
Q ss_pred chHHHHHHHHHHHHH
Q 006937 454 DDKLFEAHRDWGKRF 468 (625)
Q Consensus 454 ~~~~~~~~~~~~~~~ 468 (625)
-....+.-++....+
T Consensus 488 L~si~~lekR~~~af 502 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHHHHHHHHHhc
Confidence 555555544444443
No 161
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.04 E-value=1.7e-10 Score=103.91 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=100.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (625)
+-+.|+.|+.+|+|++|+.+|.+.+..+|.|+..+.+.+.+|+++..+..|...+..++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 131 RLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 131 ~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
+..+|.+.++.++++.|++.+....++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 999999999999999999877654443
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.04 E-value=1e-08 Score=89.55 Aligned_cols=72 Identities=26% Similarity=0.381 Sum_probs=42.2
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 152 (625)
.+.+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 34455666666666666666666666666554432 3455666666666666666666666666666655544
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.04 E-value=1e-09 Score=78.18 Aligned_cols=64 Identities=31% Similarity=0.490 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 373 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 373 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667777777777777777777777777777777777777777777777777777777777764
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.03 E-value=2.2e-06 Score=80.33 Aligned_cols=203 Identities=31% Similarity=0.464 Sum_probs=106.0
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALK--IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV-IYK 236 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~-~~~ 236 (625)
....+..+...+.+..+...+...+. ..+.....+...+..+...+++..++..+.+++...+.........+. ++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 33444444555555555555555554 445555555556666666666666666666666555544333333334 555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q 006937 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 316 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 316 (625)
..|+++.|...+.+++...|. .. .........+..+...+++
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~----~~----------------------------------~~~~~~~~~~~~~~~~~~~ 183 (291)
T COG0457 142 ELGDYEEALELYEKALELDPE----LN----------------------------------ELAEALLALGALLEALGRY 183 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCC----cc----------------------------------chHHHHHHhhhHHHHhcCH
Confidence 666666666666665543332 00 1122222333334444555
Q ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 317 DMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 317 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
+.|+..+.+++...+. ....+..++..+...+++.+|+..+..++...|.....+..++..+...+.++++...+.+++
T Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555 455555555555555555555555555555555544455555555555555666666666666
Q ss_pred HhCCC
Q 006937 396 AANPT 400 (625)
Q Consensus 396 ~~~p~ 400 (625)
...|.
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 65554
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.03 E-value=1.1e-09 Score=78.15 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH
Q 006937 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (625)
+.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35677778888888888888888888888888888888888888888888888888887777764
No 166
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.03 E-value=1.7e-08 Score=85.32 Aligned_cols=130 Identities=15% Similarity=0.061 Sum_probs=107.5
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT 120 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (625)
.....+..+......++...+...++++++.+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 35566777777788999999999999999999988 5678889999999999999999999999987664 45788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 006937 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (625)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (625)
.++.++...|++++|+..++.. . +... .+.++..+|.++...|++++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~-~--~~~~-----~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQI-P--DEAF-----KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-c--Ccch-----HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8999999999999999999662 1 1111 13346778999999999999999998864
No 167
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=8.5e-07 Score=89.57 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=134.3
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHH--------HHHH---cCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHH
Q 006937 49 KDALSYANILRSRNKFVDALALYE--------IVLE---KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC 117 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~--------~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (625)
..|-.+|.++.+..+.+-|.-++- +++. .+|++ .-...|.....+|..++|+.+|.+.-+
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE--DEAKVAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 356678888888877777765542 2222 24433 333456667889999999999998754
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHH----------HhhC
Q 006937 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA----------LKID 187 (625)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~----------l~~~ 187 (625)
+-.+-.+|...|.+++|.+..+.--++. +-..|++.+..+...++.+.|+++|+++ +..+
T Consensus 829 -~DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 829 -YDLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred -HHHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 3456678888999999988766432222 1223777888888889999999999864 2223
Q ss_pred CC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------hCCCCHHHHHHHHHHHH
Q 006937 188 PH----------YAPAYYNLGVVYSELMQYDTALGCYEKAAL---------------------ERPMYAEAYCNMGVIYK 236 (625)
Q Consensus 188 ~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~---------------------~~~~~~~~~~~la~~~~ 236 (625)
|. +...|...|..+...|+.+.|+.+|..+-. ....+..+.+.+|+.|.
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE 978 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence 33 456677789999999999999999988743 23345678899999999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 006937 237 NRGDLESAIACYERCLA 253 (625)
Q Consensus 237 ~~g~~~~A~~~~~~al~ 253 (625)
..|+..+|+..|.++..
T Consensus 979 n~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999999887643
No 168
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.3e-07 Score=80.54 Aligned_cols=168 Identities=14% Similarity=0.040 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 270 (625)
......-|.++...|++++|++...+. .+.++...-..++.++.+.+-|.+.++++.+++.+. ....++.+|.
T Consensus 108 ~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv 180 (299)
T KOG3081|consen 108 LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWV 180 (299)
T ss_pred HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHH
Confidence 345555677888899999998887763 345666666778888889999999999988876553 3445666666
Q ss_pred HhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 006937 271 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 350 (625)
Q Consensus 271 ~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 350 (625)
.++. ..+.+.+|.-+|++.-+..+..+.....++.+.+.++++++|...++.++..++++++.+.++..+-...|..
T Consensus 181 ~la~---ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 181 KLAT---GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHhc---cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 5542 1345777777777777767777777777777777777888887777777777777777777777777777766
Q ss_pred HHHHH-HHHHHHccCCCCH
Q 006937 351 DKAVE-CYQMALSIKPNFS 368 (625)
Q Consensus 351 ~~A~~-~~~~al~~~~~~~ 368 (625)
.++.. .+.+....+|+++
T Consensus 258 ~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 258 AEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred hHHHHHHHHHHHhcCCcch
Confidence 55543 4444444556554
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=99.02 E-value=9.5e-09 Score=84.55 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=98.5
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
..-+..+..|..++..|++++|..+|+-+...+|.+++.++.+|.|+..+++|++|+..|..+..++++++...+..|.|
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKP 151 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (625)
++..|+.+.|+.+|+.++. .|.+..
T Consensus 115 ~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 9999999999999999998 455433
No 170
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.02 E-value=1.5e-07 Score=100.17 Aligned_cols=233 Identities=10% Similarity=0.023 Sum_probs=195.7
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 006937 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-RPMY----AEAYCNMGVIYKNRGDLESAIAC 247 (625)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~----~~~~~~la~~~~~~g~~~~A~~~ 247 (625)
-.+..+-|++.+..+|+....|..+...+.+.++.++|.+..++++.. ++.. ..+|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788889999999999999999999999999999999999874 3332 33455555555556777788888
Q ss_pred HHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006937 248 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 327 (625)
Q Consensus 248 ~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 327 (625)
|+++.+.+.. -.++..+..+|...+.+++|.++++..++...+....|..++..++.+++-++|...+.+|+
T Consensus 1520 FeRAcqycd~--------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1520 FERACQYCDA--------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHhcch--------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9998876543 23566777788888999999999999999999999999999999999999999999999999
Q ss_pred hhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHH
Q 006937 328 HFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAE 403 (625)
Q Consensus 328 ~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 403 (625)
+.-|. +.+.....|.+-++.|+.+.+...|+..+.-+|.-.+.|.-+...-.+.|+.+.+...|++++.+. |....
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 99888 788899999999999999999999999999999999999999999999999999999999999874 44444
Q ss_pred HHHHHHHHHH
Q 006937 404 AYNNLGVLYR 413 (625)
Q Consensus 404 ~~~~la~~~~ 413 (625)
.++..=.-|.
T Consensus 1672 fffKkwLeyE 1681 (1710)
T KOG1070|consen 1672 FFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHHH
Confidence 4444333333
No 171
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=9.9e-09 Score=96.06 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
++.+++.|+.++++|.+|+..+.++|.++|+|..+++..|.++..+|+++.|+..|+++++++|+|..+...+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 5566666666666666666666666666666666666666666666666666666666666666665555443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.02 E-value=8.8e-10 Score=83.18 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=55.1
Q ss_pred cCCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 347 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (625)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (625)
+|++++|+.+++++++..|. +...++.+|.++++.|++++|+.++++ .+.++.+....+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777777664 344566677777777777777777777 666666666777777777777777777777
Q ss_pred HHHH
Q 006937 425 YEQC 428 (625)
Q Consensus 425 ~~~a 428 (625)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7654
No 173
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=3.2e-07 Score=80.69 Aligned_cols=257 Identities=16% Similarity=0.094 Sum_probs=180.6
Q ss_pred HHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 006937 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (625)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 244 (625)
+-++..|+|..++..-++.-... ........+.+.|..+|++...+......- .....+...++.....-++.++-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence 34555689988888777655443 667778888899999998876655443322 12234445555555555555555
Q ss_pred HHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006937 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (625)
Q Consensus 245 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (625)
+.-+.+.+........ ......-+.++...+++++|++..... ...++...-..++.++.+.+-|.+.++
T Consensus 92 ~~~l~E~~a~~~~~sn-----~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 92 LASLYELVADSTDGSN-----LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred HHHHHHHHHhhccchh-----HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444332222111 112223345556678999999887763 345666667788889999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 325 LAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 325 ~al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
++.+++.+. .+..||..+.+ .+++.+|.-+|+..-+..|..+..+..++.|...+|++++|...++.++..+++
T Consensus 162 ~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 162 KMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred HHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 998887653 33344444433 347889999999999888888999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCChh
Q 006937 401 YAEAYNNLGVLYRDAGSISLAI-DAYEQCLKIDPDSRN 437 (625)
Q Consensus 401 ~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 437 (625)
+++.+.++-.+-...|...++. ++..+....+|+.+-
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999999988888876654 555666667777653
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=99.01 E-value=5.3e-09 Score=85.99 Aligned_cols=106 Identities=9% Similarity=0.031 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006937 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (625)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (625)
.++..+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34445566666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 410 VLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 410 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
.||..+|+.++|+.+|+.+++ .|.+.
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 777777777777777777776 34433
No 175
>PRK11906 transcriptional regulator; Provisional
Probab=99.00 E-value=3.7e-08 Score=94.75 Aligned_cols=160 Identities=9% Similarity=0.008 Sum_probs=103.8
Q ss_pred hHHHHHHHHHhCC---CHHHHHHHHHHHH---HcCCCCHHHHHhHHHHHHHh---------cCHHHHHHHHHHHHhcCCC
Q 006937 50 DALSYANILRSRN---KFVDALALYEIVL---EKDSGNVEAHIGKGICLQMQ---------NMGRLAFDSFSEAVKLDPQ 114 (625)
Q Consensus 50 ~~~~~a~~~~~~g---~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 114 (625)
.++..|...+..+ ..+.|+.+|.+++ +.+|+.+.++..++.|++.. .+..+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4466677666555 3567788888888 77888888888888887654 2345566777777777777
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q 006937 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (625)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 194 (625)
++.++..+|.+....++++.|...|++++.++|+...+ ++..|......|+.++|++.++++++++|....+-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~-------~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL-------YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 77777777777777777777777777777777776554 55555555666677777777777777666654433
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHH
Q 006937 195 YNLGVV-YSELMQYDTALGCYEK 216 (625)
Q Consensus 195 ~~la~~-~~~~~~~~~A~~~~~~ 216 (625)
...-.+ .+.....++|+.+|-+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCchhhhHHHHhh
Confidence 322222 3333445555555544
No 176
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.2e-08 Score=95.46 Aligned_cols=131 Identities=21% Similarity=0.205 Sum_probs=106.0
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CC-----------HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDS----GN-----------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (625)
...-..|..+++.|+|..|...|++++..-. .+ ..++.+++.|+.++++|.+|+..+.++|..+|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 3455678999999999999999999887522 11 24789999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC-hHHHHHHHHHHHhh
Q 006937 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN-TQDGIQKYYEALKI 186 (625)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~ 186 (625)
+|..+++..|.++...|+++.|+..|++++++.|++..+...+.. +..+... .+...+.|.+++..
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~-------l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK-------LKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999887544333 2222222 23345666666654
No 177
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.98 E-value=4.5e-08 Score=87.50 Aligned_cols=107 Identities=19% Similarity=0.127 Sum_probs=99.1
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT 120 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (625)
+++.++..|..++..|+|.+|...|...++..|++ +.+++.||.+++.+|++++|...|..+.+..|++ +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 44669999999999999999999999999999986 5899999999999999999999999999987765 67899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 006937 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (625)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 153 (625)
.+|.+...+|+.++|...|+++++..|+...+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999999987763
No 178
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.98 E-value=3.7e-07 Score=80.83 Aligned_cols=191 Identities=16% Similarity=0.133 Sum_probs=134.6
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHH---
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC--- 117 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 117 (625)
....+..++..|...++.|+|++|+..|+.+....|.++ .+.+.++.++++.+++++|+..+++.+++.|.++.
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 345789999999999999999999999999999988754 78999999999999999999999999999987654
Q ss_pred HHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 006937 118 AHTHCGILYKDEG--------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (625)
Q Consensus 118 ~~~~la~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (625)
+++..|.+++..= -..+|...|+..+...|++.-+...... +..+...+
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~------------------i~~~~d~L----- 166 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR------------------IVKLNDAL----- 166 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH------------------HHHHHHHH-----
Confidence 6777777766432 2456788889999999987544221111 11111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 006937 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (625)
Q Consensus 190 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (625)
..--...|+.|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus 167 -A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 167 -AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred -HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 2223445666777777777777777777665543 4556666667777777777665544333333443
No 179
>PRK11906 transcriptional regulator; Provisional
Probab=98.97 E-value=3.8e-08 Score=94.68 Aligned_cols=147 Identities=11% Similarity=0.067 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 281 DINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEM---------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (625)
Q Consensus 281 ~~~~A~~~~~~~l---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 348 (625)
..+.|+.+|.+++ +++|....++..++.++... ....+|.+..+++++++|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567888888888 88888888888888877643 12345666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 006937 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQ 427 (625)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 427 (625)
+++.|...|++|+.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+-....++|+..|-+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 666666666666666666666666666666666666666666666666666543332222222 2223344555555544
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.97 E-value=2.9e-08 Score=101.07 Aligned_cols=144 Identities=16% Similarity=0.062 Sum_probs=108.2
Q ss_pred HHcCCCCHHHH--HhHHHHHHHhcC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 006937 75 LEKDSGNVEAH--IGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG--------RLVEAAESYHK 141 (625)
Q Consensus 75 l~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~ 141 (625)
....|.+..+| +..|..+...++ ..+|+.+|+++++++|+++.++..++.++.... +...+....++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34556665544 555666655544 678888999999999998888888777765432 34456666666
Q ss_pred HHhc--CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 142 ALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (625)
Q Consensus 142 al~~--~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 219 (625)
++.+ .+..+.. +..+|......|++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.
T Consensus 410 a~al~~~~~~~~~-------~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRI-------YEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6664 4444433 55566677778999999999999999998 478999999999999999999999999999
Q ss_pred hCCCCHH
Q 006937 220 ERPMYAE 226 (625)
Q Consensus 220 ~~~~~~~ 226 (625)
++|.++.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9998775
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.95 E-value=2.2e-08 Score=92.32 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=82.2
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 006937 334 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN 406 (625)
Q Consensus 334 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 406 (625)
....+..|..+ ...|++++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45555555554 55678888888888888888876 4688888888888888888888888888777664 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 407 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 407 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
.+|.++..+|++++|...|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 888888888888888888888888888876554
No 182
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=5.6e-05 Score=72.41 Aligned_cols=348 Identities=12% Similarity=0.047 Sum_probs=204.8
Q ss_pred HHHHHhHHHHHHHhc--CHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 006937 82 VEAHIGKGICLQMQN--MGRLAFDSFSEAVKLDPQN---ACAHTHCGILYK-DEGRLVEAAESYHKALSADPSYKPAAEC 155 (625)
Q Consensus 82 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (625)
+.++.++|..+...| +...++++++..+...|.+ +.....+|.+++ ...+++.|...++++..+...-+..+..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 356778888888888 8999999999998887764 456777786654 5789999999999998765444433333
Q ss_pred HHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHH
Q 006937 156 LAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAE 226 (625)
Q Consensus 156 ~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~ 226 (625)
.-.....++.++.... .+..+...+.+++++....+ ...+.++.++.-..++..|++.+.-..+.... ...
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 4444666777777766 88999999999999977654 45677899999999999999885432221111 111
Q ss_pred HHHHH--HHHHHHcCCH---HHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchh--------------------------
Q 006937 227 AYCNM--GVIYKNRGDL---ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK-------------------------- 275 (625)
Q Consensus 227 ~~~~l--a~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~-------------------------- 275 (625)
+.+.+ +.++....+. ..+.....+..+....++.-...+-..|..+...
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 12222 1222222222 2222222233222222221111111111110000
Q ss_pred --------------------------------------hhhcCCHHHHHHHHHHHHhhCCC------CH--------HHH
Q 006937 276 --------------------------------------VKLEGDINQGVAYYKKALYYNWH------YA--------DAM 303 (625)
Q Consensus 276 --------------------------------------~~~~~~~~~A~~~~~~~l~~~~~------~~--------~~~ 303 (625)
-...|-+++|.++-++++..... .. ..+
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 01234455555555555433111 11 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHH
Q 006937 304 YNLGVAYGEMLKFDMAIVFYELAFHF---NPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQS 370 (625)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~al~~---~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~ 370 (625)
..+..+-.-.|++.+|++....+.+. .|. .+.+...+|.....-+.++.|...|..|.+..... +.+
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34455556667777777766666554 232 24555666776677777777877777777663322 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
-.++|..|...|+-+.-.+.++. +.|.+ ..+++..|...+.++++.||....++.++..
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 55677777776665444333332 23332 3456667777778888888888888888765
No 183
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=3.5e-06 Score=80.43 Aligned_cols=265 Identities=14% Similarity=0.097 Sum_probs=184.4
Q ss_pred HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHc
Q 006937 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALERPM--------YAEAYCNMGVIYKNR 238 (625)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~~~--------~~~~~~~la~~~~~~ 238 (625)
.+..+...+..-.+.++....+.+.+....+..++..|++.+|.+.+... +...|. ....+.++|-++++.
T Consensus 217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~ 296 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL 296 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh
Confidence 33344444444444455555667788888899999999999999988654 222222 233568999999999
Q ss_pred CCHHHHHHHHHHHHhc-----------CCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 239 GDLESAIACYERCLAV-----------SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307 (625)
Q Consensus 239 g~~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 307 (625)
|.|.-+..+|.++++. .|...........++++.|..+...|+.-.|.++|.++......++..|..++
T Consensus 297 ~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlA 376 (696)
T KOG2471|consen 297 GCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLA 376 (696)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 9999999999999951 11111222333457788888888899999999999999999999999999999
Q ss_pred HHHHhcCC-------------------------------------------------HHHHHHHHHHHHhhC--------
Q 006937 308 VAYGEMLK-------------------------------------------------FDMAIVFYELAFHFN-------- 330 (625)
Q Consensus 308 ~~~~~~~~-------------------------------------------------~~~A~~~~~~al~~~-------- 330 (625)
.+++...+ .+-|.-+++.++-+-
T Consensus 377 EcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~ 456 (696)
T KOG2471|consen 377 ECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGS 456 (696)
T ss_pred HHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchh
Confidence 98853211 133444454444320
Q ss_pred -------------------------------------C-CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 331 -------------------------------------P-HC-----------AEACNNLGVIYKDRDNLDKAVECYQMAL 361 (625)
Q Consensus 331 -------------------------------------~-~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al 361 (625)
| .. ..++.+.+.+-...|+.-.|+..-.+.+
T Consensus 457 ~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLL 536 (696)
T KOG2471|consen 457 ILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLL 536 (696)
T ss_pred hhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 1 00 1345567778888999999999999988
Q ss_pred ccCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHH------H-----------------hCCC----------c--
Q 006937 362 SIKPNFSQSLNNLGVVY-----TVQGKMDAAAEMIEKAI------A-----------------ANPT----------Y-- 401 (625)
Q Consensus 362 ~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al------~-----------------~~p~----------~-- 401 (625)
+. |+...++..+|.+| ..+.+..+|...+.--+ . ++|. .
T Consensus 537 q~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~ 615 (696)
T KOG2471|consen 537 QL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVE 615 (696)
T ss_pred hh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHH
Confidence 76 45556666666555 45667777766554411 0 0110 0
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006937 402 ---AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (625)
Q Consensus 402 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (625)
...+++||.++.-+|++++|..++..+..+-|
T Consensus 616 ~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 616 EARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred HHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 23678999999999999999999999999888
No 184
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=6.8e-07 Score=85.09 Aligned_cols=379 Identities=13% Similarity=0.030 Sum_probs=231.7
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHH-HhcCCC--------c
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA-VKLDPQ--------N 115 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~ 115 (625)
....+........+++..+...+....+.++....+.+.+++..+..++..|++.+|.+.+... +...|. .
T Consensus 203 ~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~ 282 (696)
T KOG2471|consen 203 DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSS 282 (696)
T ss_pred ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhh
Confidence 3445566667777888899999999989888888889999999999999999999999987643 122222 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CC--CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 006937 116 ACAHTHCGILYKDEGRLVEAAESYHKALSA---------DP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (625)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~~--~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (625)
-..|.++|.++++.|.|.-+..+|.++++. .| ...-....-..++++.|..+...|+.-.|.++|.++.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 235688999999999999999999999961 11 1111122234568999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHH--------------H--HHh-----CC---CCHHHHHHHHHHHHH
Q 006937 185 KIDPHYAPAYYNLGVVYSELMQ---YDTALGCYEK--------------A--ALE-----RP---MYAEAYCNMGVIYKN 237 (625)
Q Consensus 185 ~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~--------------a--l~~-----~~---~~~~~~~~la~~~~~ 237 (625)
.....++..|..++.+.+...+ .++......+ . ++. .+ .-+..-..++.++.+
T Consensus 363 ~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLr 442 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLR 442 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHH
Confidence 9999999999999998875322 1111111111 0 000 00 001112222222222
Q ss_pred cCCH-----HHHHHHHHHHHhc----------------------------CC-Cc----HHHHhhHHHHHHHhchhhhhc
Q 006937 238 RGDL-----ESAIACYERCLAV----------------------------SP-NF----EIAKNNMAIALTDLGTKVKLE 279 (625)
Q Consensus 238 ~g~~-----~~A~~~~~~al~~----------------------------~~-~~----~~~~~~~~~~~~~l~~~~~~~ 279 (625)
.+-+ ..--..+.-+... .| .. .+..+....++...+.+....
T Consensus 443 nal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~L 522 (696)
T KOG2471|consen 443 NALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELEL 522 (696)
T ss_pred hhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 1100 0000000000000 01 11 123344566777778888889
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAY-----GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 354 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~-----~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 354 (625)
|+.-.|+..-.+.++. ++-..++..+|.+| +.+.+..+|...+.--+--+.+....+ .....+.+.+--
T Consensus 523 gd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~-----n~~Df~~~~~~~ 596 (696)
T KOG2471|consen 523 GDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPY-----NQEDFDQWWKHT 596 (696)
T ss_pred cChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCccccccc-----chhhhhhhhccc
Confidence 9999999999988865 34455666666555 455666666655543111000000000 000001000000
Q ss_pred HHHHH----HHccCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 355 ECYQM----ALSIKPNF-----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYAEAYNNLGVLYRDAGSISLAID 423 (625)
Q Consensus 355 ~~~~~----al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~ 423 (625)
+.++- .-+..|.. ...++++|.++.-+|++++|..++..+..+-+ ..+++....-.+-..+|+...|..
T Consensus 597 e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~ 676 (696)
T KOG2471|consen 597 ETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALA 676 (696)
T ss_pred cccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHH
Confidence 00000 00111111 23788999999999999999999998888766 445666666666778899999998
Q ss_pred HHHHHH
Q 006937 424 AYEQCL 429 (625)
Q Consensus 424 ~~~~al 429 (625)
.+++.-
T Consensus 677 ~lk~~~ 682 (696)
T KOG2471|consen 677 RLKQCT 682 (696)
T ss_pred HHHhcc
Confidence 888764
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.90 E-value=1.4e-05 Score=74.42 Aligned_cols=294 Identities=15% Similarity=0.049 Sum_probs=180.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILY 126 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 126 (625)
+.+..|.+....|+-..|.+.-.+.-+.-..+ +-+++.-++.-...|+++.|.+-|+.++. +|+. .-.+..+-.-.
T Consensus 86 qALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleA 164 (531)
T COG3898 86 QALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEA 164 (531)
T ss_pred HHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHH
Confidence 34556777777889999998888876543333 44556667778888999999999998774 3332 11222233334
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh---CCCC-----HHHHHHHH
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI---DPHY-----APAYYNLG 198 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~---~~~~-----~~~~~~la 198 (625)
...|..+.|..+-+.+....|.-..+. ...-...+..|+++.|+++.+..... .++. ...+...+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~-------~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAA-------RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHH-------HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 568999999999999999999877653 23334456779999999998776543 2221 11122222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhh
Q 006937 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 278 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (625)
... -..+...|...-.++.++.|+....-..-+..+++.|+..++-.+++.+.+..|... ++..|... +
T Consensus 238 ~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~a-----r 306 (531)
T COG3898 238 MSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRA-----R 306 (531)
T ss_pred HHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHh-----c
Confidence 222 234577888888888888888888888888888889999998888888888877632 22222221 1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
.|+ .++.-++++ .+...+.|++.+.....+...+..|++..|..--+
T Consensus 307 ~gd--ta~dRlkRa-------------------------------~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 307 SGD--TALDRLKRA-------------------------------KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred CCC--cHHHHHHHH-------------------------------HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 121 122222211 22223345555555555555555555555555555
Q ss_pred HHHccCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 006937 359 MALSIKPNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIA 396 (625)
Q Consensus 359 ~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 396 (625)
.+....|.. .++..++.+-... |+-.+...++.++++
T Consensus 354 aa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 354 AAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 555555442 2344444444433 666666666666655
No 186
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.87 E-value=1.2e-09 Score=98.56 Aligned_cols=241 Identities=15% Similarity=0.060 Sum_probs=170.6
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 239 (625)
+...|+.|+++|.|++|+.+|.+++..+|.++..+.+.+..|+++.+|..|...++.++.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q 006937 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A 319 (625)
+..+|.+.++.++++.|++.+....++. +. ...++. -+.+..|. +-.|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~----i~-------Sl~E~~----I~~KsT~G-----------------~~~A 227 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLAR----IN-------SLRERK----IATKSTPG-----------------FTPA 227 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHH----hc-------chHhhh----HHhhcCCC-----------------CCcc
Confidence 9999999999999999997654433222 21 111110 01111111 1112
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006937 320 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (625)
Q Consensus 320 ~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (625)
.+-..+++.+ ..-|..+...|.++.++.++-+-+.....+...-.+ +..+.+.-++++|+....+++..+|
T Consensus 228 ~Q~~~Q~l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~ 298 (536)
T KOG4648|consen 228 RQGMIQILPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKP 298 (536)
T ss_pred ccchhhhccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCC
Confidence 2222222211 112444555666666766666655554444333333 5566677777788777777777777
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 400 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 400 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
.........+.+---.|...++...++.++.+.|.+..+...
T Consensus 299 s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~ 340 (536)
T KOG4648|consen 299 TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKET 340 (536)
T ss_pred CcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhh
Confidence 665555555555566677788888888888888887766544
No 187
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.87 E-value=9.4e-08 Score=92.80 Aligned_cols=121 Identities=23% Similarity=0.239 Sum_probs=107.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCH
Q 006937 305 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 384 (625)
Q Consensus 305 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 384 (625)
.+..++...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3455566678899999999998888865 5667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 385 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 428 (625)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 428 (625)
+.|++..+++++..|.+...|+.|+.+|..+|++++|+..++.+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999766533
No 188
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.86 E-value=8.9e-08 Score=77.13 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=97.3
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH---HH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CA 118 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 118 (625)
...+..++..|...++.|+|.+|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++.++++|.++ .+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3567889999999999999999999999999988864 47899999999999999999999999999999875 47
Q ss_pred HHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCCHHH
Q 006937 119 HTHCGILYKDEGR---------------LVEAAESYHKALSADPSYKPA 152 (625)
Q Consensus 119 ~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~~~~~ 152 (625)
++..|.+++.+.. ..+|...|++.++..|++..+
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8899999988876 889999999999999997654
No 189
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=3.2e-08 Score=82.65 Aligned_cols=105 Identities=27% Similarity=0.308 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006937 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (625)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (625)
+..-|.-++..|+|++|..-|..|+++.|..+ .++.+.|.++.+++.++.|+..+.++++++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 34457777888899999999999998888764 3788899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 412 YRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
|.++..+++|+.-|++.++.+|....++..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 999999999999999999999998877655
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.83 E-value=1.2e-08 Score=73.47 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=56.9
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
++..|+|++|+..|++++..+|++..+++.+|.+++..|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4678889999999999999999999999999999999999999999999999988888777776665
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.82 E-value=2.4e-06 Score=75.76 Aligned_cols=173 Identities=17% Similarity=0.113 Sum_probs=128.1
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 157 (625)
.+..++..|...+..|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++.+.+.|.++.+.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d---- 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD---- 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh----
Confidence 46789999999999999999999999999998865 56889999999999999999999999999999988763
Q ss_pred HHHHHhHHHHHHh--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006937 158 IVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (625)
Q Consensus 158 ~~~~~l~~~~~~~--------~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 229 (625)
.+++..|.+++.. .-..+|+..|+..+...|++.-+-..... +..+... -..--.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHH
Confidence 3355555554432 22456777777777777775433211111 1111111 123345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHhhHHHHHHHhch
Q 006937 230 NMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGT 274 (625)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~l~~ 274 (625)
.+|..|.+.|.+..|+.-++.+++..|+.. ++...+..+|..+|.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 688999999999999999999999987754 455566677777774
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.82 E-value=1.2e-07 Score=92.10 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=107.2
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 277 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 356 (625)
Q Consensus 277 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 356 (625)
...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++++.|+..
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3467899999999999988865 6677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (625)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (625)
.+++++..|++...|..|+.+|..+|++++|+..++.+
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999887744
No 193
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1e-07 Score=79.64 Aligned_cols=108 Identities=23% Similarity=0.247 Sum_probs=97.2
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH-----HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
+.+-..|+.++..|+|++|..-|..+|...|... ..+.+.|.++++++.++.|+..+.++++++|.+..++...|
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3455678889999999999999999999988753 46788999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 156 (625)
.+|.+...+++|+..|+++++.+|....+....
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 999999999999999999999999987664433
No 194
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.80 E-value=4.4e-05 Score=78.68 Aligned_cols=287 Identities=12% Similarity=0.021 Sum_probs=194.3
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 006937 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (625)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (625)
...+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++... +..+-.+|...++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t-------Lq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT-------LQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH-------HHHHHHHHHHHhh
Confidence 467889999999999999999999999999999999999999998887776666665444 5667778888999
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCH---------H
Q 006937 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK-NRGDL---------E 242 (625)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~---------~ 242 (625)
.++|..+|++++..+|+ .+..+.+-.+|.+.+.|.+-.+.--+..+..|+++..+.....+.. ..... .
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999999999999999 8888899999999999988777777777788887665544444433 33222 2
Q ss_pred HHHHHHHHHHhcC-CCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHH-Hhh-CCCCHHHHHHHHHHHHhcCCHHHH
Q 006937 243 SAIACYERCLAVS-PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA-LYY-NWHYADAMYNLGVAYGEMLKFDMA 319 (625)
Q Consensus 243 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-l~~-~~~~~~~~~~la~~~~~~~~~~~A 319 (625)
-|...+++.++.. +-...+. +..|. .+...++.+++|.+.+..- .+. .+.+...-......+...+++.+-
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE---~~Lyl---~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAE---IILYL---LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred HHHHHHHHHhccCCccchHHH---HHHHH---HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 3555666666655 2111111 11111 2334468899999998433 333 344445555667788889999999
Q ss_pred HHHHHHHHhhCCCCHHHHHH-H------------HHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHcCCHH
Q 006937 320 IVFYELAFHFNPHCAEACNN-L------------GVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMD 385 (625)
Q Consensus 320 ~~~~~~al~~~~~~~~~~~~-l------------a~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~ 385 (625)
.+...+++...+++...+.. . +..+...+..+..++..++.+......+. ++..+-.-+...|+.+
T Consensus 246 ~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~e 325 (932)
T KOG2053|consen 246 FELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSE 325 (932)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChH
Confidence 99999999998887222221 1 11112223344444445555444233332 3333333344667888
Q ss_pred HHHHHHHH
Q 006937 386 AAAEMIEK 393 (625)
Q Consensus 386 ~A~~~~~~ 393 (625)
++...|-+
T Consensus 326 e~~~~y~~ 333 (932)
T KOG2053|consen 326 EMLSYYFK 333 (932)
T ss_pred HHHHHHHH
Confidence 87655543
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.80 E-value=1.9e-07 Score=74.25 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---CHHHHHHHH
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLG 375 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la 375 (625)
+.+.+|.++-..|+.++|+..|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34445555555555555555555555543222 334455555555555555555555555554444 344444455
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 006937 376 VVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al 395 (625)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555544443
No 196
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.79 E-value=0.00017 Score=68.73 Aligned_cols=136 Identities=11% Similarity=0.036 Sum_probs=100.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH-----HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (625)
+...|..+..++++.+|.++|.++.+...+++ +.+.++....+-+++.+.-...+...-+..|..+......|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 44578899999999999999999987655443 4444555556667788887777777777889888888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH--HHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPA------AECLAIVL--TDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~a~~~--~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
.++.+++.+|++.+......-...... .......+ ...+.++...|.+.++...+++.+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999999999999887765542221111 11111111 23577888999999999999988765
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.77 E-value=2.4e-07 Score=73.65 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNL 408 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 408 (625)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999975444 568999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 006937 409 GVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~ 430 (625)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988875
No 198
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.75 E-value=2e-07 Score=83.36 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 006937 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 410 (625)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 410 (625)
.++.|.-+++.|+|..|...|..-++..|+. +.++++||.+++.+|++++|...|..+++..|+. +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6777777888888888988888888888876 5688999999999999999999999998887655 688999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 411 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 411 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
+..++|+.++|...|+++++..|+...+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999998776544
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.72 E-value=4.2e-08 Score=70.65 Aligned_cols=56 Identities=29% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 006937 348 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 348 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 33444444444444444444444444444444444444444444444444443333
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.69 E-value=1.1e-07 Score=69.66 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=54.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
...+...++|++|++++++++..+|+++..+..+|.++..+|++.+|+..|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456778888888888888888888888888888888888888888888888888888887776655444
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.69 E-value=3.6e-06 Score=69.82 Aligned_cols=147 Identities=17% Similarity=0.151 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (625)
Q Consensus 282 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (625)
.+....-..+.+...|. ..-.+.+|..+.+.|++.+|...|++++. +..+++..+..++...+..+++..|...+++.
T Consensus 72 P~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 72 PERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred hhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 33333334444444444 34567899999999999999999999886 56788899999999999999999999999999
Q ss_pred HccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 361 LSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 361 l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
.+.+|. .++....+|.++...|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+....+
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 998875 4778888999999999999999999999999887 77777888999999988888776665543
No 202
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.67 E-value=0.0005 Score=67.16 Aligned_cols=377 Identities=11% Similarity=0.032 Sum_probs=227.9
Q ss_pred ccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHh-HHHHHHHhcCHHHHHHHHHHH----Hhc---CCC
Q 006937 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG-KGICLQMQNMGRLAFDSFSEA----VKL---DPQ 114 (625)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~a----l~~---~p~ 114 (625)
..+..+..|...+...+..++|+....+|.++|...= +.+.|.. +..+-...|+...+....-++ +.. ++.
T Consensus 48 ~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~ 126 (656)
T KOG1914|consen 48 VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIK 126 (656)
T ss_pred cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcc
Confidence 3456788999999999999999999999999997543 3444433 334444455555544444443 332 455
Q ss_pred cHHHHHHHHHHHHH---cCCHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHH------------
Q 006937 115 NACAHTHCGILYKD---EGRLVEA--AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGI------------ 177 (625)
Q Consensus 115 ~~~~~~~la~~~~~---~g~~~~A--~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~------------ 177 (625)
...+|...+..+.. .|++++- +...++..+..-..+ ...+-.+|... ..+++.+
T Consensus 127 s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP--m~nlEkLW~DY-------~~fE~~IN~~tarK~i~e~ 197 (656)
T KOG1914|consen 127 SYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP--MHNLEKLWKDY-------EAFEQEINIITARKFIGER 197 (656)
T ss_pred cchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc--cccHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Confidence 55566666554432 3455433 222333322211111 01112222222 2333333
Q ss_pred --------HHHHHHHhh-------CCC----C-------HHHHHHHHHHHHHcC------C--HHHHHHHHHHHHHhCCC
Q 006937 178 --------QKYYEALKI-------DPH----Y-------APAYYNLGVVYSELM------Q--YDTALGCYEKAALERPM 223 (625)
Q Consensus 178 --------~~~~~~l~~-------~~~----~-------~~~~~~la~~~~~~~------~--~~~A~~~~~~al~~~~~ 223 (625)
..+++...+ +|. . .+.|.++...-...+ . -..-.-.+++++..-+-
T Consensus 198 s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~ 277 (656)
T KOG1914|consen 198 SPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGY 277 (656)
T ss_pred CHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhc
Confidence 222222211 111 0 112222221111110 0 01223345666666667
Q ss_pred CHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhc---CCHHHHH
Q 006937 224 YAEAYCNMGVIYKNRGD--------------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE---GDINQGV 286 (625)
Q Consensus 224 ~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~ 286 (625)
.+++|+..+..+...++ .+++..+|++++...... ....++.++...... ...+..-
T Consensus 278 ~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~------~~~Ly~~~a~~eE~~~~~n~~~~~~ 351 (656)
T KOG1914|consen 278 HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE------NKLLYFALADYEESRYDDNKEKKVH 351 (656)
T ss_pred CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHhcccchhhhhH
Confidence 77888777666666555 677788888877643321 122333333222222 2366677
Q ss_pred HHHHHHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHccC
Q 006937 287 AYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNLDKAVECYQMALSIK 364 (625)
Q Consensus 287 ~~~~~~l~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~ 364 (625)
..+++++.....+. -++..+-..-.+..-...|...|.++-+.......++..-|.+ |...++..-|...|+-.++..
T Consensus 352 ~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf 431 (656)
T KOG1914|consen 352 EIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKF 431 (656)
T ss_pred HHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhc
Confidence 78888877654443 3556666666677778899999999877654444455444443 556799999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 365 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 365 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
++.+..-......+...++-..|...|++++.. .++ ..++|..+-..-..-|+....++.=++-....|.+
T Consensus 432 ~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 432 GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999987 333 35788888888888999999998888877777744
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.66 E-value=1.2e-07 Score=91.12 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
+|+++..++++|.+|...|++++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666677777777777777777777777777777766643 666777777777777777777766665
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.65 E-value=1.7e-07 Score=68.52 Aligned_cols=63 Identities=24% Similarity=0.399 Sum_probs=35.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh
Q 006937 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 438 (625)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 438 (625)
.+|...+++++|++++++++..+|+++..+..+|.++..+|++.+|...|+++++..|+++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 345555555555555555555555555555555555555555555555555555555555444
No 205
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1e-05 Score=69.89 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=74.4
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------
Q 006937 337 CNNLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA------- 402 (625)
Q Consensus 337 ~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------- 402 (625)
+..+|.+|... .++++|+.+|+++-+..... ...+...+..-..+++|.+|+..|++.....-++.
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 34455555544 66777777777776553322 23556666667778888888888888776644432
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHH
Q 006937 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 444 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 444 (625)
..++.-|.|+.-..+.-.+...+++..+++|...+.+.-.++
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 345566777777788888999999999999998887765443
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=4.5e-05 Score=67.19 Aligned_cols=226 Identities=14% Similarity=0.131 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALER-------------PMY------AEAYCNMGVIYKNRGDLESAIACYERC 251 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (625)
...|...-.++.++..+++|..-+...-+.+ |+. .......|.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4455556666777777777776665544332 111 123344566677778777776665554
Q ss_pred HhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-
Q 006937 252 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN- 330 (625)
Q Consensus 252 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 330 (625)
...-.+ +-.........+..++.+++-+ ..+.+.+..++.-.|.|.-.+..+.+.++.+
T Consensus 149 ~~~V~~--------------ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~ 208 (366)
T KOG2796|consen 149 KTVVSK--------------ILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP 208 (366)
T ss_pred HHHHHH--------------HHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence 322111 1111111223355666666654 3577888899999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 006937 331 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 404 (625)
Q Consensus 331 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 404 (625)
|..+.....+|.+..+.|+.+.|..+|++.-+.. .....+..+.+.++.-.+++.+|...+.+++..+|.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 6678889999999999999999999999554332 2234577888889999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 405 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
-.+.|.|+.-+|+..+|++..+.+++..|...
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999754
No 207
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.61 E-value=1.9e-06 Score=69.60 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHH
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNL 408 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l 408 (625)
..++.-|...++.|+|++|++.|+......|.. ..+...++.+|++.+++++|+..+++.++++|+++ -+++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 334444444444455555555554444444332 23444555555555555555555555555544442 344445
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHhcCCCChhhh
Q 006937 409 GVLYRDAGS---------------ISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 409 a~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~ 439 (625)
|.++..+.. ..+|...|++.++..|++.-+.
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 555444443 6789999999999999886554
No 208
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.60 E-value=6.6e-06 Score=80.27 Aligned_cols=104 Identities=26% Similarity=0.351 Sum_probs=92.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006937 341 GVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 419 (625)
Q Consensus 341 a~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 419 (625)
|..+...|+...|++++..|+...|.... ...++|.++.+.|...+|-..+.+++.+....+-.++.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 33444579999999999999999887644 67899999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhhhhHHH
Q 006937 420 LAIDAYEQCLKIDPDSRNAGQNRLL 444 (625)
Q Consensus 420 ~A~~~~~~al~~~p~~~~~~~~~~~ 444 (625)
.|++.|++|++++|+++.....+.+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHH
Confidence 9999999999999999988776654
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=0.00012 Score=64.61 Aligned_cols=232 Identities=14% Similarity=0.123 Sum_probs=145.7
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc------------------H-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------------------A-CAHTHCGILYKDEGRLVEAAESYHK 141 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~~ 141 (625)
....|...-.++.++...++|..-+...-+++..+ | ......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34566667777788888888887776655543211 1 1223345556667777766665555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006937 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221 (625)
Q Consensus 142 al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 221 (625)
....- ..+-.........+..++.+++-+ ..+.+.+..++.-.|.|.-.+..+.+.++.+
T Consensus 148 L~~~V--------------~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 148 LKTVV--------------SKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHH--------------HHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 43311 111111222233355666666654 3567888899999999999999999999988
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCH
Q 006937 222 -PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 300 (625)
Q Consensus 222 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 300 (625)
|..+.....+|.+.++.|+.+.|..+|+..-+....-... ....
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~-----------------------------------q~~~ 252 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL-----------------------------------QGKI 252 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc-----------------------------------chhH
Confidence 6678889999999999999999999999765332211100 0112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 367 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 367 (625)
.+..+.+.++.-.+++.+|...+.+++..+|.++.+.++.|.|+...|+...|++.++.+++..|..
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 2344455555555666666666666666666666666666666666666666666666666666543
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.58 E-value=4e-07 Score=87.69 Aligned_cols=83 Identities=29% Similarity=0.326 Sum_probs=52.9
Q ss_pred CCCCCCCCccccccccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHH---HHhHHHHHHHhcCHHHHHHHH
Q 006937 29 LPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSF 105 (625)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~ 105 (625)
+.++++++...++...+..++.++.+|..++..|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|+..+
T Consensus 56 ~~~~~~~~~~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L 135 (453)
T PLN03098 56 SSSPSSSPAKDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCL 135 (453)
T ss_pred cCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33344444444445555666667777777777777777777777777777766643 666666666666666666666
Q ss_pred HHHHhc
Q 006937 106 SEAVKL 111 (625)
Q Consensus 106 ~~al~~ 111 (625)
++++++
T Consensus 136 rrALel 141 (453)
T PLN03098 136 RTALRD 141 (453)
T ss_pred HHHHHh
Confidence 666665
No 211
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.55 E-value=5.6e-06 Score=64.23 Aligned_cols=100 Identities=20% Similarity=0.215 Sum_probs=83.9
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc----HHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTHCGI 124 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~ 124 (625)
..+-..|..+...|+.+.|++.|.+++..-|..+.+|.+.+..+.-+|+.++|++.+++++++.... -.++...|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3455678888889999999999999999999999999999999999999999999999999886543 346788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 125 LYKDEGRLVEAAESYHKALSADPS 148 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~ 148 (625)
+|...|+.+.|...|+.+-++...
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCH
Confidence 999999999999999888776554
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.55 E-value=2.9e-05 Score=64.63 Aligned_cols=148 Identities=17% Similarity=0.133 Sum_probs=98.0
Q ss_pred cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhHHHHHHhCChH
Q 006937 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174 (625)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~l~~~~~~~~~~~ 174 (625)
=+.+....-..+.+...|.. .-.+.+|....+.|++.+|...|++++.- ...+... +..+++..+..+++.
T Consensus 70 ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~-------lLglA~Aqfa~~~~A 141 (251)
T COG4700 70 LDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAM-------LLGLAQAQFAIQEFA 141 (251)
T ss_pred cChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHH-------HHHHHHHHHhhccHH
Confidence 34444444444555555543 23566777777777777777777777653 2233332 555666666777777
Q ss_pred HHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 175 DGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (625)
Q Consensus 175 ~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (625)
.|...+++..+.+|. .++....+|+.+..+|++.+|...|+.++...|. +......+..+.++|+..+|...+....
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 777777777777664 4566777778888888888888888888877776 5666677777777777777766555444
No 213
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=3e-05 Score=67.07 Aligned_cols=190 Identities=15% Similarity=0.118 Sum_probs=122.9
Q ss_pred cCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHH
Q 006937 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175 (625)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~ 175 (625)
+++++|.++|.++- ..|....++..|-..|.++-...-... .....+..|...+.+|. ..+.++
T Consensus 28 ~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~-skhDaat~YveA~~cyk-k~~~~e 91 (288)
T KOG1586|consen 28 NKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAG-SKHDAATTYVEAANCYK-KVDPEE 91 (288)
T ss_pred cchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHhh-ccChHH
Confidence 46777777776653 233334444444444444433211110 00111333444444443 347778
Q ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHH
Q 006937 176 GIQKYYEALKIDPHY------APAYYNLGVVYSEL-MQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLE 242 (625)
Q Consensus 176 A~~~~~~~l~~~~~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~ 242 (625)
|+.++++++++..+. ...+..+|.+|..- .++++|+.+|+++-+.... .-..+...+..-...++|.
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888777775443 23455788888765 8999999999998765432 2345666777788899999
Q ss_pred HHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHH
Q 006937 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 301 (625)
Q Consensus 243 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 301 (625)
+|+..|+++....-++....+..-..++.-|.++....+.-.+...+++..+.+|...+
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 99999999988877777666666666667777777777877788888888888887654
No 214
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.52 E-value=6.9e-06 Score=63.75 Aligned_cols=97 Identities=23% Similarity=0.271 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHH
Q 006937 303 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVY 378 (625)
Q Consensus 303 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~ 378 (625)
+...|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++++.... -.++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34456667777778888888888888888878888888888877888888888888887775433 23666777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCC
Q 006937 379 TVQGKMDAAAEMIEKAIAANP 399 (625)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p 399 (625)
..+|+-+.|...|+.+-++..
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCC
Confidence 777777777777777766543
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.47 E-value=2.2e-07 Score=68.94 Aligned_cols=64 Identities=34% Similarity=0.493 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NP----TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
..++.++|.+|..+|++++|+.+|++++++ .+ ....++.++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345556666666666666666666666544 11 12456667777777777777777777777654
No 216
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.43 E-value=0.00084 Score=67.86 Aligned_cols=211 Identities=13% Similarity=0.143 Sum_probs=110.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 194 YYNLGVVYSELMQYDTALGCYEKA------ALE----RPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (625)
Q Consensus 194 ~~~la~~~~~~~~~~~A~~~~~~a------l~~----~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (625)
|-.-|.+|.+..++++|+++|++. +++ .|.. ...-...|..+...|+++.|+..|-++-.+.
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~------- 736 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI------- 736 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH-------
Confidence 344556666666777777776642 222 2221 2223345666667777777777665542211
Q ss_pred hhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 006937 263 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 342 (625)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 342 (625)
..-........+.+|+.+++....... ....|-.++.-|...|+|+.|.++|.++- ....-..
T Consensus 737 --------kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~ 799 (1636)
T KOG3616|consen 737 --------KAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAID 799 (1636)
T ss_pred --------HHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHH
Confidence 111111113455555555554332211 12234456677777777777777776542 2223334
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHH-------------HHHHHHH------HH----hC
Q 006937 343 IYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAA-------------AEMIEKA------IA----AN 398 (625)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A-------------~~~~~~a------l~----~~ 398 (625)
.|-+.|++..|.+.-++... |.. ...|...+.-+-+.|++.+| +..|++. +. ..
T Consensus 800 my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhC
Confidence 55566666666665555432 221 22344444444444444444 3433332 11 12
Q ss_pred CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 399 PTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 399 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
|+. .+.+..+|.-|...|+..+|...|-++-.
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 332 35778889999999999999888876643
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.42 E-value=0.00055 Score=69.70 Aligned_cols=155 Identities=16% Similarity=0.082 Sum_probs=115.1
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCH-HH------HHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 278 LEGDINQGVAYYKKALYYNWHYA-DA------MYNLGVAYG----EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~~~~~-~~------~~~la~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 346 (625)
-.|+-+.+++.+.++.+...-.. -+ |+....... .....+.|.+.++...+..|+..-.++..|+++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 46899999999998876322111 11 111111111 24567889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCH---
Q 006937 347 RDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSI--- 418 (625)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~--- 418 (625)
.|+.++|++.|++++.....- .-.++.+++++..+.+|++|..++.+..+.+.-. .-..+..|.|+...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 999999999999988543332 3378889999999999999999999999876654 34556778889999988
Q ss_pred ----HHHHHHHHHHHhcC
Q 006937 419 ----SLAIDAYEQCLKID 432 (625)
Q Consensus 419 ----~~A~~~~~~al~~~ 432 (625)
++|.++|+++-.+.
T Consensus 360 ~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 66777776665443
No 218
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=8.9e-07 Score=76.47 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=96.0
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+..++.+-..|+.++...+|..|+..|.+++..+|..+..+.+.+.|+++..+++.+.....+++++.|+....++.+|.
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence 34577788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 006937 125 LYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~ 145 (625)
.......+++|+..+.++..+
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999665
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.41 E-value=5.3e-07 Score=66.92 Aligned_cols=74 Identities=28% Similarity=0.407 Sum_probs=56.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
|+...++..+|.+|..+|++++|+.+|++++++...........+.++.++|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34466889999999999999999999999997632222233445777888888888888888888888888764
No 220
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=6.4e-05 Score=65.53 Aligned_cols=200 Identities=22% Similarity=0.190 Sum_probs=108.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 307 (625)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 307 (625)
+..-+..|...+++++|..++.++.+-..++. .++.-+..+...+.+......+.++..+++++.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake~~klsEvvdl~eKAs-------------- 98 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS-------------- 98 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------
Confidence 33445555666666666666666665444332 233334444444444444556666666666654
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHc
Q 006937 308 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 381 (625)
Q Consensus 308 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~ 381 (625)
..|.+.|..+-|-..++++-+. ....++++|+.+|++++.+-... .+.+...+.++.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 3455555555555555544332 22345666666666666553222 23455566677777
Q ss_pred CCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhhhhhHHHHhhhccC
Q 006937 382 GKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNYINE 451 (625)
Q Consensus 382 g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~ 451 (625)
..+++|-..+.+-... .++....+.....+|.-..++..|..+|+...++ .|++..+..+++- ....
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~---ayd~ 240 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT---AYDE 240 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH---Hhcc
Confidence 7777776666554332 2333344555555666666888888888776664 3444445555432 3356
Q ss_pred CCchHHHHH
Q 006937 452 GHDDKLFEA 460 (625)
Q Consensus 452 ~~~~~~~~~ 460 (625)
|+.++.-..
T Consensus 241 gD~E~~~kv 249 (308)
T KOG1585|consen 241 GDIEEIKKV 249 (308)
T ss_pred CCHHHHHHH
Confidence 666554443
No 221
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.38 E-value=2.8e-06 Score=70.80 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 316 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD---KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (625)
Q Consensus 316 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (625)
++.|.+.++.....+|.+++.+++.|.++..+.++. ++.+ .+++|+.-|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~---------------------------miedAisK~e 59 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK---------------------------MIEDAISKFE 59 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH---------------------------HHHHHHHHHH
Confidence 566777777777777777777777777766553321 1111 1234444455
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhhhhhHH
Q 006937 393 KAIAANPTYAEAYNNLGVLYRDAG-----------SISLAIDAYEQCLKIDPDSRNAGQNRL 443 (625)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~ 443 (625)
+++.++|+..++++.+|.+|..++ .|++|..+|++|...+|++...+..+-
T Consensus 60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 555555555555555555554433 367899999999999999887766543
No 222
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.37 E-value=0.0039 Score=62.37 Aligned_cols=345 Identities=9% Similarity=-0.058 Sum_probs=210.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 006937 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL-YKDEGRLVEAAESYHK 141 (625)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 141 (625)
..+.+...|...|...|.-...|...|..-.+.|..+.+.+.|++++.--|-....|..+-.. -...|+...-...|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 346667777788888898888899999999999999999999999999888877777655433 3355777777788888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHH
Q 006937 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYE 215 (625)
Q Consensus 142 al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~ 215 (625)
|......+-... ..|-..-.....++++..-...|++.++........++..=.-+... -..+++.+.-.
T Consensus 140 A~~~vG~dF~S~----~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLSD----PLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhcc----HHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 887765543321 12333344446677788888888888775433322222221111111 11122221111
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHh
Q 006937 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIA-CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 294 (625)
Q Consensus 216 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 294 (625)
..... ......+...+-.+ .........+........+.......-.++.......+.+..++..+.
T Consensus 216 ~~~~~------------~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ik 283 (577)
T KOG1258|consen 216 DVAER------------SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIK 283 (577)
T ss_pred hHHhh------------hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcc
Confidence 11100 00000001111111 111111111111111111112221112222223334444444554443
Q ss_pred h-----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CC
Q 006937 295 Y-----NWH---YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KP 365 (625)
Q Consensus 295 ~-----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~ 365 (625)
. .|. ....|......-...|+++...-.|++++--.....+.|...+......|+.+-|-..+..+.++ .|
T Consensus 284 rpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k 363 (577)
T KOG1258|consen 284 RPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK 363 (577)
T ss_pred ccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC
Confidence 2 122 23456677777788888998888888888877788888888888888888888888888888776 45
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 366 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 423 (625)
Q Consensus 366 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 423 (625)
..+.+...-+..-...|++..|...+++..+..|+...+-........++|+.+.+..
T Consensus 364 ~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 364 KTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 6677777778888888899999999998888888888877777778888888888774
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.35 E-value=0.00039 Score=70.80 Aligned_cols=167 Identities=13% Similarity=-0.011 Sum_probs=124.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhc---hhhh--hcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 006937 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG---TKVK--LEGDINQGVAYYKKALYYNWHYADAMY 304 (625)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~---~~~~--~~~~~~~A~~~~~~~l~~~~~~~~~~~ 304 (625)
.+-.+.--.|+-+.++..+.++.+ .++-......+....+... .+-. .....+.|.+.++...+..|+..-.++
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 333444456899999999999877 3332222222222211111 1111 356889999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHH
Q 006937 305 NLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYT 379 (625)
Q Consensus 305 ~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~ 379 (625)
..|+++...|+.++|++.|++++..... ..-.++.++.++..+.+|++|..++.+..+.+.-. .-..+..|.|+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 9999999999999999999998853322 24567899999999999999999999999875443 446677888999
Q ss_pred HcCCH-------HHHHHHHHHHHHh
Q 006937 380 VQGKM-------DAAAEMIEKAIAA 397 (625)
Q Consensus 380 ~~g~~-------~~A~~~~~~al~~ 397 (625)
..|+. ++|.+++.++-..
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999 7777777776544
No 224
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.33 E-value=0.0045 Score=61.87 Aligned_cols=390 Identities=12% Similarity=-0.001 Sum_probs=239.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHH-HHhcCHHHHHHHHHHHHhcCCC---cHHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-QMQNMGRLAFDSFSEAVKLDPQ---NACAHTHCGIL 125 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~ 125 (625)
-|...|..-.+.|..+.+.+.|++.+.--|-+...|..+.... ...|+.+.-...|++|...... ....|-..-..
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 3445677778899999999999999999998888877654443 4567788888889998887654 34567777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~ 205 (625)
...++++..-...|++.++. |...-. . ++..-.-.. ..+...-+...++++++...... . ......+
T Consensus 161 en~qks~k~v~~iyeRilei-P~~~~~-----~-~f~~f~~~l-~~~~~~~l~~~d~~~~l~~~~~~---~--~~~~~~~ 227 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEI-PLHQLN-----R-HFDRFKQLL-NQNEEKILLSIDELIQLRSDVAE---R--SKITHSQ 227 (577)
T ss_pred HhccccHHHHHHHHHHHHhh-hhhHhH-----H-HHHHHHHHH-hcCChhhhcCHHHHHHHhhhHHh---h--hhccccc
Confidence 77888999999999999875 322111 1 111100000 11111111111121111100000 0 0000001
Q ss_pred CHHHHHHHH-HHHHHhCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHhhHHHHHHHh
Q 006937 206 QYDTALGCY-EKAALERPMYAEAY-------CNMGVIYKNRGDLESAIACYERCLAV-----SPNFEIAKNNMAIALTDL 272 (625)
Q Consensus 206 ~~~~A~~~~-~~al~~~~~~~~~~-------~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~l 272 (625)
...+-.+.. .......+...... ...=.++.......+.+..++..++. .|.+..-. ..+...
T Consensus 228 ~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql----~nw~~y 303 (577)
T KOG1258|consen 228 EPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL----KNWRYY 303 (577)
T ss_pred ChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH----HHHHHH
Confidence 111111111 11111111111111 11112333334445555556655543 22221111 112222
Q ss_pred chhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Q 006937 273 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLD 351 (625)
Q Consensus 273 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 351 (625)
.......|+++.....|++++--.....+.|...+......|+.+-|...+..+.++. +..+.+...-+......|++.
T Consensus 304 Ldf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~ 383 (577)
T KOG1258|consen 304 LDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFD 383 (577)
T ss_pred hhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHH
Confidence 2334457899999999999998888889999999999999999999999999998874 667888888888899999999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCc---HHHHHHHHHH-HHHcCCHHHHHHH
Q 006937 352 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAANPTY---AEAYNNLGVL-YRDAGSISLAIDA 424 (625)
Q Consensus 352 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~---~~~~~~la~~-~~~~g~~~~A~~~ 424 (625)
.|...+++..+..|+...+-.........+|+.+.+.. ++.....-..+. ...+...++. +.-.++.+.|...
T Consensus 384 ~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~ 463 (577)
T KOG1258|consen 384 DAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARII 463 (577)
T ss_pred HHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999998889998888888888889999998884 333322221111 2334444443 4457889999999
Q ss_pred HHHHHhcCCCChhhhhhHHHHhhhccCCCchH
Q 006937 425 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456 (625)
Q Consensus 425 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 456 (625)
+.++++..|++...+..+..-..+...+....
T Consensus 464 l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d 495 (577)
T KOG1258|consen 464 LLEANDILPDCKVLYLELIRFELIQPSGREYD 495 (577)
T ss_pred HHHhhhcCCccHHHHHHHHHHHHhCCcchhhh
Confidence 99999999999887766544443434344333
No 225
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.33 E-value=8e-06 Score=68.11 Aligned_cols=96 Identities=25% Similarity=0.292 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHH---HhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 006937 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK---LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ-- 206 (625)
Q Consensus 132 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~---~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-- 206 (625)
++.|.+.++.....+|.+.+.....+.++..++.... ...-+++|+.-|++++.++|+...+++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555555555444444444444321 22356788999999999999999999999999987654
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHH
Q 006937 207 ---------YDTALGCYEKAALERPMYAEA 227 (625)
Q Consensus 207 ---------~~~A~~~~~~al~~~~~~~~~ 227 (625)
|++|..+|+++...+|++...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 566777777777777775443
No 226
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.32 E-value=0.00078 Score=68.08 Aligned_cols=312 Identities=16% Similarity=0.138 Sum_probs=154.7
Q ss_pred hHHHHHHHhcCHHHHHHHHHHH------Hhc----CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 006937 87 GKGICLQMQNMGRLAFDSFSEA------VKL----DPQN-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (625)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 155 (625)
.-|.++.+..++++|+++|++. +++ .|.. ...-...|.-+...|+++.|+..|-.+--
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~----------- 734 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC----------- 734 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----------
Confidence 3445555556666666666532 222 2221 11223345556667777777777655421
Q ss_pred HHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006937 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (625)
Q Consensus 156 ~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 235 (625)
+............+.+|+..++....... ....|-.++.-|...|+|+.|.++|.++ ........+|
T Consensus 735 ----~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my 801 (1636)
T KOG3616|consen 735 ----LIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMY 801 (1636)
T ss_pred ----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHH
Confidence 12222233344667777777765543322 2334556677788888888888888764 2223334567
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHH-HHhhHHHHHHHh------chhhhhcCCHHHHHHHHHHHH----------hhCCC
Q 006937 236 KNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDL------GTKVKLEGDINQGVAYYKKAL----------YYNWH 298 (625)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~l----------~~~~~ 298 (625)
-+.|++++|.+.-+++.. |.... .+...+.-+-.- ..+|...|..+.|+..|++.- +.+|+
T Consensus 802 ~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred hccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChh
Confidence 777888887777666532 22111 111111111111 112233344555555554421 11222
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH--HHH---
Q 006937 299 Y-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ--SLN--- 372 (625)
Q Consensus 299 ~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~--- 372 (625)
. .+....+|.-+...|+...|...|-++-.. ..-...|...+-+++|-..-+ .....+.. +.+
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~d~--------kaavnmyk~s~lw~dayriak---tegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF--------KAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFLWA 948 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhhhH--------HHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHHHH
Confidence 2 345667777777888888887777665321 111222333333333322111 11111111 000
Q ss_pred ------HHHHHHHHcCCHHHHHHHH------HHHHH-----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 373 ------NLGVVYTVQGKMDAAAEMI------EKAIA-----ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 373 ------~la~~~~~~g~~~~A~~~~------~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
.-..++-+.|-.+.|+... +-+.. ....-++++..++..+...|++++|-++|-.+++++.-+
T Consensus 949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 0111223334444433321 11111 122335677888888888888888888888888887544
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00028 Score=61.69 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=16.0
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
|..-+..+...+++++|...+.++.+-
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~ 60 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG 60 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 444455555566666666666666643
No 228
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.29 E-value=9.4e-05 Score=72.55 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=94.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHH
Q 006937 307 GVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 385 (625)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 385 (625)
|......|+...|+.++..++...|.. .....++|.+..+.|-...|-.++.+++.+....+-.++.+|.++..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 444456799999999999999988865 3457899999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006937 386 AAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (625)
Q Consensus 386 ~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (625)
.|++.|+++++.+|+++.....|-.+-.
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999987776655543
No 229
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.25 E-value=0.0014 Score=62.06 Aligned_cols=131 Identities=21% Similarity=0.089 Sum_probs=104.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhHHHHHHhC-ChHHHHHHHHHHHhh----CCC----------
Q 006937 126 YKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKI----DPH---------- 189 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~----~~~---------- 189 (625)
...+|+++.|..++.|+-... ..++.....++.++++.|......+ +++.|...++++.+. ...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999997766 6667777889999999999999999 999999999999887 211
Q ss_pred CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006937 190 YAPAYYNLGVVYSELMQYD---TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (625)
Q Consensus 190 ~~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 256 (625)
...++..++.+|...+.++ +|...++.+-...|+.+..+...-.++.+.++.+++.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 1356778889998887765 455566666667788888886766777778999999999999887654
No 230
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.0069 Score=63.91 Aligned_cols=295 Identities=11% Similarity=0.071 Sum_probs=154.6
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSG---NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (625)
.+++..---...++..+-..+-++++++++-.+.. +......+-.. .-.-+.....++.++.-..+.. .+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa~------~i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDAP------DI 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCch------hH
Confidence 45555556667778888888889999887654321 22222222222 2233445555666554333221 24
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 202 (625)
|.+....+-|++|...|++.- -+..+.. ......++.+.|.++-+++ +.+.+|..+|....
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~----~n~~A~~----------VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD----MNVSAIQ----------VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQL 1115 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc----ccHHHHH----------HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHH
Confidence 556666667777777776531 1111111 0111224555555554443 33566677777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH-------------
Q 006937 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL------------- 269 (625)
Q Consensus 203 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------- 269 (625)
+.|...+|++.|-++ +++..+.....+..+.|.|++-+.++.-+-+...... .-..+..+|
T Consensus 1116 ~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-id~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-IDSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred hcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-chHHHHHHHHHhchHHHHHHHh
Confidence 777777777666553 4556666666666667777776666666554432211 111111111
Q ss_pred --------HHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----------
Q 006937 270 --------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---------- 331 (625)
Q Consensus 270 --------~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---------- 331 (625)
...|+-+...+.++.|.-+|.. ..-|..++..+..+|+|..|...-+++-....
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc
Confidence 2234444455556655555543 33456677777777777777777666532200
Q ss_pred ---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 006937 332 ---------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (625)
Q Consensus 332 ---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (625)
-.++-+-.+...|...|-+++-+..++.++-+...+-..+..+|.+|.+
T Consensus 1262 ~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1262 KEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 0122233344445555555555555555555555554555555554443
No 231
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.18 E-value=4.5e-05 Score=72.15 Aligned_cols=136 Identities=9% Similarity=0.043 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (625)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455666666666778888888888876666667888888888666 4555558888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 006937 381 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 437 (625)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 437 (625)
.|+.+.|..+|++++..-|... .+|......-...|+.+......+++.+..|++..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 8888888888888888766544 57778888888889999999999999998888543
No 232
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.18 E-value=0.0026 Score=63.23 Aligned_cols=296 Identities=15% Similarity=0.068 Sum_probs=149.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCC-CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC--------CcHHHHHHHHH
Q 006937 54 YANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--------QNACAHTHCGI 124 (625)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~ 124 (625)
.+++..+.|+|+. +.+.+...+ ......+..+......++++++...++++...-- ......+..-.
T Consensus 4 ~~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3567778888888 333333322 2346667777777788999988888887765421 11111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHH--HHHHHHHHHh----hCCCCHHHHHHHH
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD--GIQKYYEALK----IDPHYAPAYYNLG 198 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~--A~~~~~~~l~----~~~~~~~~~~~la 198 (625)
.+....+.+++..+....... ......+...|...-. ....+++- -+-.++..+- ........+...+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~--~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a 153 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLP--NMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFA 153 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 111222333333333211100 1111111111111100 00111111 1111112111 1344567889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhch
Q 006937 199 VVYSELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~ 274 (625)
.+..+.|+++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+................ ..+.
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~--~~~~ 231 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAEL--KSGL 231 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHH--hhcc
Confidence 999999999999999999887552 2567888889999999999999999988887221111000000000 0000
Q ss_pred hhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 006937 275 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 348 (625)
Q Consensus 275 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 348 (625)
................ ......++..+|...... +..++++..|.++++.+|....+|..+|..+...-
T Consensus 232 ~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 232 LESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred ccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 0000000000000000 000123445555555555 56666666666666666666666666665544321
Q ss_pred -----------------CHHHHHHHHHHHHccCCC
Q 006937 349 -----------------NLDKAVECYQMALSIKPN 366 (625)
Q Consensus 349 -----------------~~~~A~~~~~~al~~~~~ 366 (625)
-...|+..|-+++...+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 307 ESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 124588888888888777
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.18 E-value=0.00048 Score=67.00 Aligned_cols=141 Identities=16% Similarity=0.051 Sum_probs=85.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc----------------
Q 006937 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---------------- 115 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------- 115 (625)
-.......+..+.+.-++.-+++++.+|+.+.++..++.- ......+|..+|+++++.....
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 3455566788999999999999999999999999888763 2334567777777776542110
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 116 ---------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 116 ---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
..+...+|.|..+.|+.++|++.++..++..|.... ..+..++..++...+.+.++...+.+.-+.
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-----l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-----LNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-----hhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 223445566666666666666666666665553211 112455555556666666666666554322
Q ss_pred -CCCCHHHHHHHHH
Q 006937 187 -DPHYAPAYYNLGV 199 (625)
Q Consensus 187 -~~~~~~~~~~la~ 199 (625)
-|+++...+..+.
T Consensus 325 ~lpkSAti~YTaAL 338 (539)
T PF04184_consen 325 SLPKSATICYTAAL 338 (539)
T ss_pred cCCchHHHHHHHHH
Confidence 2344444444333
No 234
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.18 E-value=0.016 Score=61.82 Aligned_cols=316 Identities=13% Similarity=0.037 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHcCCC----CHHHHHhHHHHHH-HhcCHHHHHHHHHHHHhcCCC--c----HHHHHHHHHHHHHcCCHH
Q 006937 65 VDALALYEIVLEKDSG----NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLDPQ--N----ACAHTHCGILYKDEGRLV 133 (625)
Q Consensus 65 ~~A~~~~~~~l~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~ 133 (625)
..|+.+++-+++..+- .+.+.+.+|.+++ ...++++|..++++++.+... . ..+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4567788877753222 3467888999987 789999999999999887643 2 224556788888888777
Q ss_pred HHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHcCC
Q 006937 134 EAAESYHKALSADPSYKPA-AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPA----YYNLGVVYSELMQ 206 (625)
Q Consensus 134 ~A~~~~~~al~~~~~~~~~-~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~----~~~la~~~~~~~~ 206 (625)
|...+++.++........ +...-+ +. ........+++..|++.++...... ..++.+ ....+.+....+.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~fr-ll-~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFR-LL-KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHH-HH-HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999998875552221 111111 11 1222222379999999999988775 344333 3344666777788
Q ss_pred HHHHHHHHHHHHHhCC----------CCHHHHHHHHHH--HHHcCCHHHHHHHHHHH---HhcCCCcH------------
Q 006937 207 YDTALGCYEKAALERP----------MYAEAYCNMGVI--YKNRGDLESAIACYERC---LAVSPNFE------------ 259 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~----------~~~~~~~~la~~--~~~~g~~~~A~~~~~~a---l~~~~~~~------------ 259 (625)
.+++++.++++..... ....++..+-.+ +...|+++.+...+++. ++...+..
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~ 274 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIP 274 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEE
Confidence 8888888888744221 123444444443 44567766666554443 22211110
Q ss_pred --------------H------HHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCC-------C-------------
Q 006937 260 --------------I------AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------Y------------- 299 (625)
Q Consensus 260 --------------~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-------~------------- 299 (625)
. .....+.+|.--|......+..++|.++++++++.-.+ .
T Consensus 275 l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~ 354 (608)
T PF10345_consen 275 LNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQ 354 (608)
T ss_pred eecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHH
Confidence 0 01112233333344444455555777777666543111 0
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH------
Q 006937 300 ------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---PH------CAEACNNLGVIYKDRDNLDKAVECYQ------ 358 (625)
Q Consensus 300 ------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~------~~~~~~~la~~~~~~~~~~~A~~~~~------ 358 (625)
....+..+.+..-.+++..|...++.+.... |. .+..++..|..+...|+.+.|+..|.
T Consensus 355 ~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 355 WLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh
Confidence 0124456666677788888888877766542 22 36677788888888888888888887
Q ss_pred --HHHccCCCC---HHHHHHHHHHHHHcCC
Q 006937 359 --MALSIKPNF---SQSLNNLGVVYTVQGK 383 (625)
Q Consensus 359 --~al~~~~~~---~~~~~~la~~~~~~g~ 383 (625)
.+....+.. .-+..++..++...+.
T Consensus 435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~ 464 (608)
T PF10345_consen 435 CEAANRKSKFRELYILAALNLAIILQYESS 464 (608)
T ss_pred hhhhccCCcchHHHHHHHHHHHHHhHhhcc
Confidence 333333332 1244556666665554
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00023 Score=65.06 Aligned_cols=164 Identities=11% Similarity=-0.030 Sum_probs=123.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh-CCCC---HHHHH
Q 006937 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-DPHY---APAYY 195 (625)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~~~~---~~~~~ 195 (625)
..-+.+....|++.+|...+++.++..|.+.-++. .--..++..|+...-...+++++.. +++. ..+.-
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~k-------fsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~G 179 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVK-------FSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHG 179 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhh-------hhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHH
Confidence 34455667789999999999999999998866533 3334555668888888888888877 5554 55566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchh
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~ 275 (625)
.++..+...|-|++|.+..++++++++.+..+...++.++...|++.++.++..+.-..-. ..+...+.-|...+..
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr---~s~mlasHNyWH~Al~ 256 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR---QSWMLASHNYWHTALF 256 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh---hhhHHHhhhhHHHHHh
Confidence 7788889999999999999999999999999999999999999999999998876543322 2333334445555555
Q ss_pred hhhcCCHHHHHHHHHHHH
Q 006937 276 VKLEGDINQGVAYYKKAL 293 (625)
Q Consensus 276 ~~~~~~~~~A~~~~~~~l 293 (625)
+...+.++.|+++|.+-+
T Consensus 257 ~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 257 HIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhcccchhHHHHHHHHHH
Confidence 566677777777776644
No 236
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.15 E-value=0.018 Score=61.36 Aligned_cols=409 Identities=15% Similarity=0.068 Sum_probs=241.2
Q ss_pred cchHhHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCC--CH----HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC---c
Q 006937 46 FEGKDALSYANILR-SRNKFVDALALYEIVLEKDSG--NV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---N 115 (625)
Q Consensus 46 ~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 115 (625)
.++...+.+|.+++ ...++++|...+++++..... .. .+.+.++.++.+.+... |+..+++.++.... .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 46788899999998 678999999999999876533 22 34456788888887766 99999999886544 2
Q ss_pred -HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC---
Q 006937 116 -ACAHTHC--GILYKDEGRLVEAAESYHKALSADP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--- 187 (625)
Q Consensus 116 -~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--- 187 (625)
....+.+ ...+...+++..|++.++....... .+... ...+....+.+....+..+++++.++++....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~---~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV---FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 2222222 2333334799999999999988753 33332 22234445566677788888888888774431
Q ss_pred ---CC----CHHHHHHHH--HHHHHcCCHHHHHHHHHHH---HHh---CC---C---C----------------------
Q 006937 188 ---PH----YAPAYYNLG--VVYSELMQYDTALGCYEKA---ALE---RP---M---Y---------------------- 224 (625)
Q Consensus 188 ---~~----~~~~~~~la--~~~~~~~~~~~A~~~~~~a---l~~---~~---~---~---------------------- 224 (625)
+. ...++..+- .++...|+++.+...+++. ++. .+ . +
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~ 292 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFS 292 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEe
Confidence 11 233344333 3455677777776665544 211 11 0 0
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-----------------HHH--hhHHHHHHHhchhhh
Q 006937 225 --------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-----------------IAK--NNMAIALTDLGTKVK 277 (625)
Q Consensus 225 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------------~~~--~~~~~~~~~l~~~~~ 277 (625)
.-++..-|......+..++|.++++++++.-.+.. ..+ .....++...+....
T Consensus 293 wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~ 372 (608)
T PF10345_consen 293 WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNF 372 (608)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 11233345566667777788888888875422211 011 112233344555566
Q ss_pred hcCCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhhCCCC---HHHH
Q 006937 278 LEGDINQGVAYYKKALYYN---WH------YADAMYNLGVAYGEMLKFDMAIVFYE--------LAFHFNPHC---AEAC 337 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~---~~------~~~~~~~la~~~~~~~~~~~A~~~~~--------~al~~~~~~---~~~~ 337 (625)
..+++..+....+.+.... |. .+..++..|..+...|+.+.|+..|. .+....+.+ .-+.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 6889988988888776543 22 36678999999999999999999998 333333333 2344
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHccCCCCHHHHHHHHH-----HHH--HcCCHHHHHHHHHHHHHhC-CC--c--
Q 006937 338 NNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQSLNNLGV-----VYT--VQGKMDAAAEMIEKAIAAN-PT--Y-- 401 (625)
Q Consensus 338 ~~la~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~la~-----~~~--~~g~~~~A~~~~~~al~~~-p~--~-- 401 (625)
.++..++...+.-.. +...++..-....+.+..+...+. ++. ..-...++...+.++++.. .. +
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 566677766554333 344444332221122222222222 221 1223447777777777654 11 1
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhhhhhH----HHHhhhccCCCchHHHH
Q 006937 402 --AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS---RNAGQNR----LLAMNYINEGHDDKLFE 459 (625)
Q Consensus 402 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~----~~~~~~~~~~~~~~~~~ 459 (625)
.-++..++..++ .|+..+......++..+.... ....+.. ++...+-..|+.+++-.
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~ 598 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEE 598 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 234556666666 788888777777777655444 4443322 22233555666665443
No 237
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.14 E-value=0.0038 Score=65.27 Aligned_cols=177 Identities=23% Similarity=0.236 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHh-----cCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcC--
Q 006937 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-----NMGRLAFDSFSEAVKL-----DPQNACAHTHCGILYKDEG-- 130 (625)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 130 (625)
+..+|..+++.+.+. .+..+...+|.|+..- .+.+.|+.+|+.+.+. .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887665 5778888899988754 5899999999998771 1125667888999998843
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHh---CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 006937 131 ---RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA---GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE- 203 (625)
Q Consensus 131 ---~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~---~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~- 203 (625)
++..|+.+|.++-..... .+ .+.+|.++... .+...|.++|..+... .+..+.+.++.+|..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~--~a-------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP--DA-------QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc--hH-------HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 678899999999876544 33 34445555443 3678999999988764 467888888888875
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 006937 204 ---LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (625)
Q Consensus 204 ---~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 254 (625)
..+...|..++.++.+.. .+.+...++..+... ++++.+.-.+....+.
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 357889999999998887 455555555555443 7777766666555444
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.14 E-value=0.0031 Score=60.69 Aligned_cols=125 Identities=13% Similarity=0.061 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCcHHH
Q 006937 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYER-CLAVSPNFEIA 261 (625)
Q Consensus 190 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~~~~~~~ 261 (625)
+++...++-.+|....+|+.-+++.+..-.. -++.+.+.+.+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4667778888899999999999999887666 45567788899999998 9999999999999 55556667777
Q ss_pred HhhHHHHHHHhchh--hhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 006937 262 KNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 315 (625)
Q Consensus 262 ~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 315 (625)
+...+.+|-.+-.. .......++|+..|.++.+.+|+. ..-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 77778877665332 122335778888888888877543 333444555555554
No 239
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=6.7e-06 Score=71.20 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=48.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006937 342 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 421 (625)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 421 (625)
..++...+|..|+.+|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+....++.+|.+......+++|
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 33444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHh
Q 006937 422 IDAYEQCLK 430 (625)
Q Consensus 422 ~~~~~~al~ 430 (625)
+..+.++..
T Consensus 98 I~~Lqra~s 106 (284)
T KOG4642|consen 98 IKVLQRAYS 106 (284)
T ss_pred HHHHHHHHH
Confidence 555555533
No 240
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=5.4e-05 Score=65.92 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
...+.+++.|+...|+|-++++.....+..+|.+..+++..|.+....=+.++|...|.++++++|.-..+...-
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrE 304 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRE 304 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHH
Confidence 447889999999999999999999999999999999999999999999999999999999999999876665543
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.00028 Score=64.62 Aligned_cols=149 Identities=13% Similarity=-0.032 Sum_probs=79.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHH
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLDKAV 354 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~~~~~~A~ 354 (625)
.|++.+|...+++.++..|.+.-++..--.+++.+|+...-...+++.+.. +++. ..+.-.++..+...|-|++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 345555555555555555555555555555555555555555555555544 3333 333334455555556666666
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 355 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 355 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
+.-++++++++.+..+...++.++...|++.++.+++.+.-..-... ..-|...|.++...+.++.|++.|.+
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 66666666666666666666666666666666665555432221110 11233445555555666666666654
No 242
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=5.6e-05 Score=65.85 Aligned_cols=108 Identities=18% Similarity=0.099 Sum_probs=95.6
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHH--------cCCCCH----------HHHHhHHHHHHHhcCHHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLE--------KDSGNV----------EAHIGKGICLQMQNMGRLAFDSFS 106 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~ 106 (625)
......+-..|+.++..|+|.+|...|+.++. ..|.++ ..+.+++.|+...|+|-++++...
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 34566788899999999999999999998864 245543 467899999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 006937 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (625)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 152 (625)
.++..+|.+..+++..|.+....=+..+|...|.++++++|.-...
T Consensus 255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999999985544
No 243
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.11 E-value=0.004 Score=61.85 Aligned_cols=138 Identities=13% Similarity=0.186 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CC-C----
Q 006937 297 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KP-N---- 366 (625)
Q Consensus 297 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~-~---- 366 (625)
......+...+.+..+.|+++.|...+.++....+ ..+.+....+.++...|+..+|+..++..+.. .. .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34567888899999999999999999998887652 24677888899999999999999988887771 00 0
Q ss_pred ----------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006937 367 ----------------------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (625)
Q Consensus 367 ----------------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (625)
...++..+|...... +..+++...|+++++.+|+...+|+.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 023555666666666 7788888888899888888888888888776
Q ss_pred HHcCC-----------------HHHHHHHHHHHHhcCCC
Q 006937 413 RDAGS-----------------ISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 413 ~~~g~-----------------~~~A~~~~~~al~~~p~ 434 (625)
...=+ ...|+..|-+++...++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 54321 12366666666666666
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.08 E-value=1e-05 Score=51.75 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 409 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 409 (625)
++..+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444443
No 245
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.06 E-value=0.00017 Score=68.30 Aligned_cols=137 Identities=11% Similarity=0.050 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHH-hcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM-QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (625)
.|+...+...+.+..+.|..+|.++++..+....+|...|..-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 356666777777778888888888886666677888888888666 4555558888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 006937 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (625)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (625)
.|+.+.|..+|++++..-+..... ..+|......-...|+.+....+.+++.+..|..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~----~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQS----KKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHC----HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hCcHHHHHHHHHHHHHhcCchhHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 888888888888888776654321 2234445555556677777777777777666653
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.04 E-value=0.00074 Score=65.77 Aligned_cols=238 Identities=15% Similarity=0.064 Sum_probs=116.1
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH
Q 006937 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (625)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~ 165 (625)
..+..-..+..+.++-++...+|++++|+.+.++..++.- ......+|..+|+++++........ ..
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~-----------s~ 238 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGK-----------SQ 238 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhch-----------hh
Confidence 3444455677889999999999999999999999888753 2344678888888887753321100 00
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCH
Q 006937 166 SLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDL 241 (625)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~ 241 (625)
.....|..- ........ ...+...+|.+..++|+.++|++.++..++..|. +..++.++..++...+.|
T Consensus 239 ~~~~~g~~~-------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 239 FLQHHGHFW-------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred hhhcccchh-------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 000000000 00000001 1233344555555555555555555555554443 334555555555555555
Q ss_pred HHHHHHHHHHHhc-CCCcHHHHhhHHHHHHH-hch-----hhhhcC---CHHHHHHHHHHHHhhCCCCHHHHHHHH----
Q 006937 242 ESAIACYERCLAV-SPNFEIAKNNMAIALTD-LGT-----KVKLEG---DINQGVAYYKKALYYNWHYADAMYNLG---- 307 (625)
Q Consensus 242 ~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~-l~~-----~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~la---- 307 (625)
.++...+.+.-+. -|+.....+..+....+ .++ ...+.| .-..|++.+.++++.+|.-+..+..+=
T Consensus 312 ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Lil 391 (539)
T PF04184_consen 312 ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLIL 391 (539)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCC
Confidence 5555555553222 12222222221111111 111 111112 234466666666666666554333221
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 006937 308 --VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 344 (625)
Q Consensus 308 --~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 344 (625)
.-..+.|+ .||+.+---.+..-.....++..|-..+
T Consensus 392 PPehilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~tw 429 (539)
T PF04184_consen 392 PPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCTW 429 (539)
T ss_pred ChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHHh
Confidence 12334443 5666555555544444444444444433
No 247
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.04 E-value=9.8e-06 Score=77.99 Aligned_cols=109 Identities=18% Similarity=0.120 Sum_probs=101.8
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
++.+-..|..++..+.|+.|+..|.++++++|+.+..+-+.+.++.+.+++..|+..+.++++.+|....+|+..|....
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 44556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAECL 156 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 156 (625)
..+++.+|...|++...+.|+.+.+...+
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 99999999999999999999998875443
No 248
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.04 E-value=0.0064 Score=63.64 Aligned_cols=229 Identities=25% Similarity=0.310 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCcHHHHhh
Q 006937 193 AYYNLGVVYSELM-----QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNN 264 (625)
Q Consensus 193 ~~~~la~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~ 264 (625)
+.+.+|.+|.+.. +++.|+.+|.++-+.. ++.+.+.+|.++.... +...|.++|..+.... +..+...
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHH
Confidence 4444555554421 3444555555554432 2344445555544433 3445555555554332 2223333
Q ss_pred HHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCH----HHHHH
Q 006937 265 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-LKFDMAIVFYELAFHFNPHCA----EACNN 339 (625)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~----~~~~~ 339 (625)
++.++.. | .....+...|..+++++.+.. .+.+.+.++..+..- +.++.+...+....+..-..+ ..+..
T Consensus 366 la~~y~~-G--~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~ 440 (552)
T KOG1550|consen 366 LALCYEL-G--LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLD 440 (552)
T ss_pred HHHHHHh-C--CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHH
Confidence 3333322 1 112335555666666655554 233333333333222 455544444443333321111 11111
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006937 340 LGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ----GKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (625)
Q Consensus 340 la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (625)
....... ..+...+...+.++.. ..+..+...+|.+|..- .+++.|...|.++.... ....+++|.+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~ 515 (552)
T KOG1550|consen 441 QSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYM 515 (552)
T ss_pred hccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhH
Confidence 1101111 1245556666665543 35667778888887654 35888888888887776 8888889988
Q ss_pred HHHc---CCHHHHHHHHHHHHhcCCCC
Q 006937 412 YRDA---GSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 412 ~~~~---g~~~~A~~~~~~al~~~p~~ 435 (625)
+..- .....|.++|.++.+.+.+.
T Consensus 516 ~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 516 HEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 8651 12688889998888876654
No 249
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.029 Score=59.53 Aligned_cols=234 Identities=14% Similarity=0.062 Sum_probs=145.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (625)
Q Consensus 61 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (625)
-++.+.|.++.+++ +.+..|..+|.+....|...+|++.|-++ +++..+.....+..+.|.|++-+.++.
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 45666666666654 45677788888888888888888777654 566667777777777788877777776
Q ss_pred HHHhcCCCC---HHHHHHHHHH-----------------HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 141 KALSADPSY---KPAAECLAIV-----------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (625)
Q Consensus 141 ~al~~~~~~---~~~~~~~a~~-----------------~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (625)
-+-+...+. .+....++.. ....|.-++..+.|+.|.-+|.. ..-|..++..
T Consensus 1158 MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~T 1229 (1666)
T KOG0985|consen 1158 MARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLAST 1229 (1666)
T ss_pred HHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHH
Confidence 665433221 1111111110 22345566666777777666643 4457778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-----------C--------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 201 YSELMQYDTALGCYEKAALER-----------P--------------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (625)
Q Consensus 201 ~~~~~~~~~A~~~~~~al~~~-----------~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (625)
+..+|+|..|....+++-... . -+++-+-.+...|...|-+++-+..++.++.+.
T Consensus 1230 LV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 999999999998888773211 0 023445567778888999999999999988887
Q ss_pred CCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcCCHHHHH
Q 006937 256 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAI 320 (625)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~~~~~~A~ 320 (625)
..+......++..|... ++++-.+.++-....- -+....|..+.-+|.+-..|+.|.
T Consensus 1310 RAHMgmfTELaiLYsky--------kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY--------KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 66665555666655543 3444443333222110 112345666677776666666554
No 250
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=7.1e-05 Score=68.34 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=92.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (625)
.++.+-..|+.|+..++|..|+..|.+.|+..-. ++..|.+.|.|.+..|+|..|+..+.+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 5667788999999999999999999999987443 456789999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPS 148 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~ 148 (625)
+.|++.+.++.+|..+++..+.++.+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999998776544
No 251
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.99 E-value=0.033 Score=58.58 Aligned_cols=298 Identities=17% Similarity=0.101 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC-----CC
Q 006937 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-----HY 190 (625)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~-----~~ 190 (625)
.+.+..-+..+...|...+|+...-.+- +| . ..+.++.+.+.-....++..--. ..++.-| .+
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~--d~---~---~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~~~l~~~ 414 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG--DP---E---MAADLLEQLEWQLFNGSELSLLL----AWLKALPAELLAST 414 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC--CH---H---HHHHHHHhhhhhhhcccchHHHH----HHHHhCCHHHHhhC
Confidence 5566666677777888888877654431 11 1 12233334444444444433222 2222223 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPM---------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (625)
+......+.......++.+|..++.++...-+. .....-..|.+....|++++|.+..+.++..-|.+.
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~-- 492 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA-- 492 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc--
Confidence 556667788888899999999999888765433 234555678888899999999999999998887653
Q ss_pred HhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCC----C--HHHHHHHHHHHHhcCC--HHHHHHHHHHHH----hh
Q 006937 262 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----Y--ADAMYNLGVAYGEMLK--FDMAIVFYELAF----HF 329 (625)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~----~--~~~~~~la~~~~~~~~--~~~A~~~~~~al----~~ 329 (625)
+.....++..+|....-.|++++|..+.+.+.+.... . ..+....+.++..+|+ +.+....+...- ..
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 3344567777888888899999999999988876332 2 2344556788888884 333333333322 22
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-
Q 006937 330 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI----KPNF--SQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY- 401 (625)
Q Consensus 330 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 401 (625)
.|.........+.++...-+++.+.....+.++. .|.. .. .++.++.+++..|++++|...+......-.+.
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 3444334444444444433466666666666554 2222 22 33589999999999999999999887763222
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 402 ------AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 402 ------~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
..+..........+|+..+|.....+
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 11222233344567888888887776
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.97 E-value=1.8e-05 Score=50.58 Aligned_cols=39 Identities=23% Similarity=0.121 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHH
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKG 89 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 89 (625)
++.+|..+...|++++|++.|+++++.+|+++.++..+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 344444444444444444444444444444444444433
No 253
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.94 E-value=0.022 Score=54.81 Aligned_cols=150 Identities=9% Similarity=-0.030 Sum_probs=93.3
Q ss_pred HHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (625)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 149 (625)
.++.-++.+|.+...|+.+..-+..+|.+++-.+.+++...-.|--+.+|...-..-+..+++.....+|-+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 3455578899999999999999999999999999999999888887777776666666678888888888888875433
Q ss_pred HHHHHHHHHHHHHhHHHH---HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHH
Q 006937 150 KPAAECLAIVLTDLGTSL---KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS---------ELMQYDTALGCYEKA 217 (625)
Q Consensus 150 ~~~~~~~a~~~~~l~~~~---~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~---------~~~~~~~A~~~~~~a 217 (625)
.+.|...-. |...-.-. ...-..-+|-+..-...-.+|.....|...+..+. ++.+.+.-.+.|.++
T Consensus 109 ldLW~lYl~-YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 109 LDLWMLYLE-YIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred HhHHHHHHH-HHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 222221110 00000000 00011223333333333346776666666665543 334456666777777
Q ss_pred HHhC
Q 006937 218 ALER 221 (625)
Q Consensus 218 l~~~ 221 (625)
+...
T Consensus 188 l~tP 191 (660)
T COG5107 188 LQTP 191 (660)
T ss_pred HcCc
Confidence 7643
No 254
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.93 E-value=1.1e-05 Score=77.57 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCC
Q 006937 304 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 383 (625)
Q Consensus 304 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 383 (625)
-.-+...+..+.++.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.+....++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34455666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
+.+|...|++...+.|+++.+...+..|-... ...-|++++-..++++
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v-----s~~~fe~ai~~~~~d~ 135 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIV-----SEEKFEKAILTPEGDK 135 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH-----HHHhhhhcccCCccCC
Confidence 77777777777777777777766666553322 3344555555544343
No 255
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.92 E-value=1.2e-05 Score=47.74 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=19.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006937 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 422 (625)
Q Consensus 391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 422 (625)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556666666666666666666666665554
No 256
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.89 E-value=2.5e-05 Score=46.82 Aligned_cols=32 Identities=44% Similarity=0.768 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46677777777777777777777777777775
No 257
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.89 E-value=0.015 Score=61.04 Aligned_cols=246 Identities=15% Similarity=0.028 Sum_probs=162.7
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--C-------HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc-
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSG--N-------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN- 115 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 115 (625)
..++-.+..|.......++.+|..++.++...-+. . ++..-..|.+....|+.++|++..+.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 35666778899999999999999999988765333 1 2455667888899999999999999999987764
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCCh--HHHHHHHHHHH----h
Q 006937 116 ----ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEAL----K 185 (625)
Q Consensus 116 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~--~~A~~~~~~~l----~ 185 (625)
..+...+|.+..-.|++++|..+...+.+....... +.....+....+.++..+|+. .+....+...- .
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~-~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV-YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 346778889999999999999999998877544322 233344455667778888833 33333333222 2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 006937 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMY--AE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (625)
Q Consensus 186 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (625)
..|.+.......+.++...-+++.+.....+.++. .|.. .. .++.++.+....|++++|...+.+......+.
T Consensus 572 q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 572 QKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred hcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 23443334444444444444466666666665543 2222 22 23588999999999999999999887665443
Q ss_pred HHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHH
Q 006937 259 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 292 (625)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 292 (625)
.......+.++.-.......+|+.+++.....+.
T Consensus 652 ~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 652 QYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 2222233333333334445577777777766653
No 258
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.88 E-value=0.0071 Score=58.32 Aligned_cols=177 Identities=12% Similarity=0.017 Sum_probs=128.3
Q ss_pred CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHH
Q 006937 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQNACAHTHCGILYKD---EGRLVEAAESYHK-ALSADPSYKPA 152 (625)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~~~~~~~ 152 (625)
+++....+-.+|....+|+.-+...+..-.+ -++...+...+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999999887666 45567788889999998 9999999999999 45556667777
Q ss_pred HHHHHHHHHHhHHHH--HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh--
Q 006937 153 AECLAIVLTDLGTSL--KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LE-- 220 (625)
Q Consensus 153 ~~~~a~~~~~l~~~~--~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~-- 220 (625)
.-..+.+|..+-... ......++|+..|.++.+.+|+. ..-.+++.++...|.-.+....+++.. +.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 777777776654331 22345899999999999999653 444566666666665333332222221 11
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 006937 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (625)
Q Consensus 221 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (625)
.-.+...+-.++.+..-.|++++|++.++++++..|..
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 12345556677788888999999999999999998764
No 259
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0069 Score=53.88 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-H
Q 006937 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD-T 209 (625)
Q Consensus 131 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~-~ 209 (625)
.-..|+..-+.++.++|.+-..|...-.++..++ .+..+-++++.++++.+|.+..+|...-.+....|++. .
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~------~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLM------SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH------HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 4455667777778888887777665544444443 45677788888888888988888888888888888887 7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHH-hchhhhhcCCHHHHHHH
Q 006937 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAY 288 (625)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~ 288 (625)
-++..+.++..+..+..+|...--+....+.++.-+.+..+.++.+-.+..++...-.+... .| .......+.-+.+
T Consensus 132 ELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~--~~~~~~le~El~y 209 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKG--VISKAELERELNY 209 (318)
T ss_pred hHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccC--CccHHHHHHHHHH
Confidence 78888888888888888888888888888889888888888888776555544432111111 00 0001134455667
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHh
Q 006937 289 YKKALYYNWHYADAMYNLGVAYGE 312 (625)
Q Consensus 289 ~~~~l~~~~~~~~~~~~la~~~~~ 312 (625)
..+.+...|++..+|..|.-++..
T Consensus 210 t~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 210 TKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHh
Confidence 777788888888888887777765
No 260
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.86 E-value=0.03 Score=53.94 Aligned_cols=78 Identities=9% Similarity=-0.144 Sum_probs=62.0
Q ss_pred cccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHH
Q 006937 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (625)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (625)
...+.+.-.++.+.+.+-.+|.+++-.+.+++...-.|--+.+|...-..-...+++.....+|.+++...-+ .+.|.
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~ 113 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWM 113 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHH
Confidence 4456778889999999999999999999999999888877777776666666678888888888888875432 44443
No 261
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.86 E-value=1.5e-05 Score=47.35 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=18.6
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006937 357 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388 (625)
Q Consensus 357 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 388 (625)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555665566666666655555555554
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0039 Score=56.81 Aligned_cols=160 Identities=14% Similarity=0.036 Sum_probs=89.2
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006937 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (625)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 162 (625)
+.-+..+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-...... .... ......
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~--l~a~i~ 211 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHG--LQAQIE 211 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHH--HHHHHH
Confidence 3344445555666666666666666666666666666666666666666666665554431111111 1000 000111
Q ss_pred hHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Q 006937 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGD 240 (625)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~ 240 (625)
+..-....++. ..+++.+..+|++..+-+.+|..+...|+.+.|++.+-..++.+.. +..+...+-.++...|.
T Consensus 212 ll~qaa~~~~~----~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 212 LLEQAAATPEI----QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHhcCCCH----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 11111111221 2234455668888999999999999999999999888888876543 44555556566655554
Q ss_pred HHHHHHHHH
Q 006937 241 LESAIACYE 249 (625)
Q Consensus 241 ~~~A~~~~~ 249 (625)
-+.+...++
T Consensus 288 ~Dp~~~~~R 296 (304)
T COG3118 288 ADPLVLAYR 296 (304)
T ss_pred CCHHHHHHH
Confidence 443433333
No 263
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.86 E-value=4e-05 Score=45.93 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567777777777777777777777777777764
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.0011 Score=60.24 Aligned_cols=156 Identities=21% Similarity=0.184 Sum_probs=109.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH-HHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGIL 125 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~ 125 (625)
..+..+..+......|++.+|...|..++...|++.++...++.|+...|+.+.|...+...-....+.. ..+......
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 4556777888999999999999999999999999999999999999999999999888875432222211 111111133
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSE 203 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~ 203 (625)
+.+.....+. ..+++.+..+|++.+. -+.++..+...|+.+.|++.+-..++.+.. +..+...+-.++..
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~a-------a~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEA-------ALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 3333333322 3455666778998887 566777777889999999999988887543 44555555555555
Q ss_pred cCCHHHH
Q 006937 204 LMQYDTA 210 (625)
Q Consensus 204 ~~~~~~A 210 (625)
.|.-+.+
T Consensus 285 ~g~~Dp~ 291 (304)
T COG3118 285 FGPADPL 291 (304)
T ss_pred cCCCCHH
Confidence 5533333
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.85 E-value=0.028 Score=53.26 Aligned_cols=159 Identities=13% Similarity=-0.018 Sum_probs=95.9
Q ss_pred HhcCHHHHHHHHHHHHhcC----CCc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc-------CCCCHHHHHHHH
Q 006937 94 MQNMGRLAFDSFSEAVKLD----PQN----ACAHTHCGILYKDEG-RLVEAAESYHKALSA-------DPSYKPAAECLA 157 (625)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~-------~~~~~~~~~~~a 157 (625)
..|+.+.|..++.++-... |+. ...++..|......+ +++.|..+++++.+. .....+......
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4455555555555544332 211 234555566666666 777777777776655 233444455567
Q ss_pred HHHHHhHHHHHHhCChH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 006937 158 IVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNM 231 (625)
Q Consensus 158 ~~~~~l~~~~~~~~~~~---~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l 231 (625)
.++..++.++...+.++ +|...++.+....|+.+..+...-.+....++.+++.+.+.+++...+- +.......
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 77888888888877654 4555666666667888888866666666789999999999999886542 22222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 006937 232 GVIYKNRGDLESAIACYERCLA 253 (625)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~ 253 (625)
..-+.. .....+...+...+.
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHH
Confidence 222222 334556666665554
No 266
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.02 Score=66.35 Aligned_cols=87 Identities=8% Similarity=-0.001 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006937 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (625)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 320 (625)
..+-+-.+++++-.-..++.....++.++...+++....|.++.|...+-++.+.. -+.+....|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 34444444444332222222334556666666666666666666666666665544 4556666666666666666666
Q ss_pred HHHHHHHhh
Q 006937 321 VFYELAFHF 329 (625)
Q Consensus 321 ~~~~~al~~ 329 (625)
..+++.++.
T Consensus 1723 ~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1723 SVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHh
Confidence 666666644
No 267
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.043 Score=63.78 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------
Q 006937 332 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PT---------- 400 (625)
Q Consensus 332 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~---------- 400 (625)
...+.|...|++....|+++.|..++-+|.+.. -+.+....|..+...|+-..|+..+++.++.+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 347788888888888888888888888877765 56778888888888888888888888888652 22
Q ss_pred c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCChhhhh
Q 006937 401 Y------AEAYNNLGVLYRDAGSI--SLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 401 ~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~ 440 (625)
. ..+...++.-....|++ ..-+.+|..+.+..|....-+.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy 1793 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHY 1793 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCcee
Confidence 1 12344445555555553 3456777888888885554433
No 268
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.023 Score=50.65 Aligned_cols=199 Identities=16% Similarity=0.125 Sum_probs=146.4
Q ss_pred chHhHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHh-cCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 47 EGKDALSYANILRSR-NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-NMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+-+..+...+..+.. ..-..|+.+-..++..+|.+..+|...-.++..+ .+..+-++++.++++.+|.+..+|...-.
T Consensus 41 ~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ 120 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRV 120 (318)
T ss_pred hHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 344555555554444 4568999999999999999999988887777655 46788899999999999999999999999
Q ss_pred HHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 125 LYKDEGRLV-EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (625)
Q Consensus 125 ~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (625)
+....|+.. .-++..+.++..+.++-.+|...- .+...-+.++.-+.+..+.++.+-.+-.+|...-.+...
T Consensus 121 ive~l~d~s~rELef~~~~l~~DaKNYHaWshRq-------W~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~ 193 (318)
T KOG0530|consen 121 IVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQ-------WVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITN 193 (318)
T ss_pred HHHHhcCcccchHHHHHHHHhccccchhhhHHHH-------HHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEe
Confidence 999999888 888999999998888877754333 334444779999999999998877666666543222222
Q ss_pred -c-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH
Q 006937 204 -L-----MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG--DLESAIACYERCL 252 (625)
Q Consensus 204 -~-----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al 252 (625)
. -..+.-+.+..+.+...|++..+|..|.-++.. .| ...+-.......+
T Consensus 194 ~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 194 TKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred ccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 1 123455677888899999999999998888875 44 2334444444443
No 269
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.74 E-value=0.075 Score=58.22 Aligned_cols=335 Identities=13% Similarity=0.033 Sum_probs=175.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---HHHHHhHHHHHHHh----c---CHHHHHHHHHHHHhcCCCcHHHHHH
Q 006937 52 LSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQ----N---MGRLAFDSFSEAVKLDPQNACAHTH 121 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~ 121 (625)
+..-..++..+.|++|+..|+++-...|.. .++.+..|.....+ | .+++|+..|++.. -.|.-|--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence 445677889999999999999999998865 46788888877643 2 4677777777643 45666777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH--------
Q 006937 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-------- 193 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-------- 193 (625)
.|.+|.++|++++-+++|.-+++..|+.+......-.+.+.+-.+.... -..|....--++...|.....
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISSREEEKFLE 635 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 9999999999999999999999999998776544444444433333221 122222222233332221100
Q ss_pred ---------------------HHH-H-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 194 ---------------------YYN-L-GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (625)
Q Consensus 194 ---------------------~~~-l-a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (625)
... + -.+-+..|..---.+.++++....+- .+..+.-.+...+|+++-+.+....
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (932)
T PRK13184 636 ILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY--RALADIFYVACDLGNWEFFSQFSDI 713 (932)
T ss_pred HHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH--HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 000 0 01112233333334455555554432 5555666666777877766554443
Q ss_pred HHh---c--CCCcHH--HHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 006937 251 CLA---V--SPNFEI--AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD-AMYNLGVAYGEMLKFDMAIVF 322 (625)
Q Consensus 251 al~---~--~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~la~~~~~~~~~~~A~~~ 322 (625)
.-+ . .|.+.. ....+......+. .......++++.+.+.. ..|.... +....+.-....++.+.-...
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (932)
T PRK13184 714 LAEVSDEITFTESIVEQKVEELMFFLKGLE-ALSNKEDYEKAFKHLDN---TDPTLILYAFDLFAIQALLDEEGESIIQL 789 (932)
T ss_pred HHHHhhhccchHHHHhhhHHHHHHHHHHHH-HHHccccHHHHHhhhhh---CCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 321 1 111111 1111111111111 11223455555543332 2222221 122222222222332222222
Q ss_pred HHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 323 YELAFHF---NPHCAEACNNLGVIYKDRDNLDKAVECYQMALS--IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 323 ~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
.+..-.. ..............|....++++|-+.+..--. ...+...+....|--+...++-+-|...|..+.
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 790 LQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 2222221 112233344455566666777777776633211 122334566666666666677777777776665
No 270
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.74 E-value=5.2e-05 Score=69.64 Aligned_cols=98 Identities=16% Similarity=0.096 Sum_probs=91.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (625)
.-..|...+..|.+++|++.|..+++++|..+..+...+.+++++++...|+..+..+++++|+...-+-..+.....+|
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 34467788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 006937 131 RLVEAAESYHKALSADPS 148 (625)
Q Consensus 131 ~~~~A~~~~~~al~~~~~ 148 (625)
++.+|...+..+.+++-+
T Consensus 197 ~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYD 214 (377)
T ss_pred chHHHHHHHHHHHhcccc
Confidence 999999999999987654
No 271
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.058 Score=52.92 Aligned_cols=97 Identities=9% Similarity=0.003 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 411 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 411 (625)
...-..+-..+.+.|-+.+|...|.+...+-|-....+..+..+-.. ..+...+..+|+.++.....+++.|...-..
T Consensus 460 ~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 460 VTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKE 539 (568)
T ss_pred eehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHh
Confidence 33344445555666666777777777666666655555544443322 1235566666666666666666666666555
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 006937 412 YRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 412 ~~~~g~~~~A~~~~~~al~ 430 (625)
-..+|..+.+-..|.+|++
T Consensus 540 e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hccCCCcccccHHHHHHHH
Confidence 5566666666666666665
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.0042 Score=52.84 Aligned_cols=118 Identities=24% Similarity=0.141 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 318 MAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI 391 (625)
Q Consensus 318 ~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~ 391 (625)
+.....++....++.+. .+...++..+...+++++|+..++.++....+. .-+-..++.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444455555554442 344677889999999999999999998764433 346778999999999999999998
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 006937 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 436 (625)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 436 (625)
+...... -.+......|.++...|+.++|+..|+++++..++..
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 7653221 1133456789999999999999999999999985543
No 273
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.64 E-value=0.00013 Score=43.56 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555666666666666666666666666554
No 274
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00031 Score=64.34 Aligned_cols=99 Identities=21% Similarity=0.189 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006937 337 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (625)
Q Consensus 337 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (625)
+..-|.-|++.++|..|+..|.+.++..-.+ ...|.+.|.+....|+|..|+..+.+++..+|.+..+++.-|.|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3344555555555555555555555543222 234555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC
Q 006937 413 RDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 413 ~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
..+.++.+|..+.+..++++-+.
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHH
Confidence 55555555555555555554443
No 275
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.58 E-value=0.084 Score=51.18 Aligned_cols=373 Identities=12% Similarity=0.012 Sum_probs=205.8
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc-------------
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------------- 115 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------- 115 (625)
+.+..+-...+-..+.+.-...+-..-+..|..+...+..|...++.+.+.+|++.+....+.-...
T Consensus 46 Evl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~ 125 (549)
T PF07079_consen 46 EVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLF 125 (549)
T ss_pred HHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHh
Confidence 4444444455566677766666666666788888888999999999999999999988766542111
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhHHHHHHh----CChHHHHHHHHHH-
Q 006937 116 --ACAHTHCGILYKDEGRLVEAAESYHKALSADPS-----YKPAAECLAIVLTDLGTSLKLA----GNTQDGIQKYYEA- 183 (625)
Q Consensus 116 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~a~~~~~l~~~~~~~----~~~~~A~~~~~~~- 183 (625)
...-...+.++...|++.++...+++.+..--. +.+.+.. +...+|+.|+-. ...+-+..+|+.+
T Consensus 126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~---~vlmlsrSYfLEl~e~~s~dl~pdyYemil 202 (549)
T PF07079_consen 126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR---AVLMLSRSYFLELKESMSSDLYPDYYEMIL 202 (549)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH---HHHHHhHHHHHHHHHhcccccChHHHHHHH
Confidence 112234578899999999999999988764322 2222111 111223322210 1111111111111
Q ss_pred ------Hhh------------------------CCCC-----HHHHHHHHHHHH--------------HcCCHHHHHHHH
Q 006937 184 ------LKI------------------------DPHY-----APAYYNLGVVYS--------------ELMQYDTALGCY 214 (625)
Q Consensus 184 ------l~~------------------------~~~~-----~~~~~~la~~~~--------------~~~~~~~A~~~~ 214 (625)
-.. -|.. ..++.+..+.|. -..+.+++....
T Consensus 203 fY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~c 282 (549)
T PF07079_consen 203 FYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFC 282 (549)
T ss_pred HHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHH
Confidence 100 1110 011111111000 011223333333
Q ss_pred HHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhh-hc---CCHHHH
Q 006937 215 EKAALE-----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-LE---GDINQG 285 (625)
Q Consensus 215 ~~al~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~-~~---~~~~~A 285 (625)
+..... ...-....-.+-....+.++..+|.+++.-...++|+..... .+...-..+-++.. .. .+...-
T Consensus 283 e~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~-Kllls~~~lq~Iv~~DD~~~Tklr~y 361 (549)
T PF07079_consen 283 EAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSE-KLLLSPKVLQDIVCEDDESYTKLRDY 361 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhh-hhhcCHHHHHHHHhcchHHHHHHHHH
Confidence 222111 111122222333344567888888888888888888765222 11111111111111 11 122233
Q ss_pred HHHHHHHHhhCCCC---HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHH
Q 006937 286 VAYYKKALYYNWHY---ADAMYNLGVAYGEMLK-FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQM 359 (625)
Q Consensus 286 ~~~~~~~l~~~~~~---~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~--~~~~ 359 (625)
+..++.+-..+-+. +.-+..-|.-+.+.|. -++|+..++.+++..+.+....+..-... ...|.+|+. .+-+
T Consensus 362 L~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fv--Kq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 362 LNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFV--KQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHH--HHHHHHHHhhhhHHH
Confidence 34444444434332 3345566777788887 88999999999999888865443322211 122333332 1222
Q ss_pred HHc---------cCC---CCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 360 ALS---------IKP---NFSQSLNNLG--VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (625)
Q Consensus 360 al~---------~~~---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (625)
.+. +.| .+.+....++ ..++..|+|.++.-+-.=..++.| .+.++..+|.++....+|++|..++
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 222 222 2344444444 457789999999999999999999 7999999999999999999999988
Q ss_pred HHH
Q 006937 426 EQC 428 (625)
Q Consensus 426 ~~a 428 (625)
...
T Consensus 519 ~~L 521 (549)
T PF07079_consen 519 QKL 521 (549)
T ss_pred HhC
Confidence 754
No 276
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.55 E-value=0.00024 Score=42.47 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 400 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 400 (625)
.+++.+|.++..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 277
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.54 E-value=0.0028 Score=53.62 Aligned_cols=96 Identities=20% Similarity=0.123 Sum_probs=75.4
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------------HHHHHhHHHHHHHhcCHHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFS 106 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (625)
+.+...|......|+.+.++..+++++...... ..+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344556777888999999999999999874322 1344567777888999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (625)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (625)
+++..+|.+..++..+..++...|+..+|+..|++...
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988754
No 278
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.53 E-value=0.0036 Score=52.90 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 430 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 430 (625)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|++.|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35667788888999999999999999999999999999999999999999999999988754
No 279
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.50 E-value=0.00011 Score=67.49 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=62.7
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006937 310 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 389 (625)
Q Consensus 310 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 389 (625)
.+..|.++.|++.|..++.++|.....+...+.++.++++...|+..+..+++++|+...-+-..+.+...+|++++|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34456677777777777777777777777777777777777777777777777777776666666777777777777777
Q ss_pred HHHHHHHhCC
Q 006937 390 MIEKAIAANP 399 (625)
Q Consensus 390 ~~~~al~~~p 399 (625)
.+..+.+++-
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 7777766643
No 280
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.47 E-value=0.12 Score=50.26 Aligned_cols=135 Identities=11% Similarity=0.008 Sum_probs=86.4
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
.++....-.......|+.-.|-..+..++...|.++......+.+...+|+|+.+...+..+-+.-.....+...+-+..
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 34444455566678899999999999999999999998889999999999999998888766554443344444555556
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 188 (625)
...|++++|....+-.+...-++++. ....+......|-++++...+++.+.++|
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei-------~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEV-------LTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhh-------eeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 66666666666666555544333332 11122222333445555555555554433
No 281
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.45 E-value=0.00023 Score=42.50 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
.+++.+|.+|..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777778888888888888888888777774
No 282
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.43 E-value=0.066 Score=51.45 Aligned_cols=129 Identities=27% Similarity=0.326 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------
Q 006937 281 DINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD------- 348 (625)
Q Consensus 281 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~------- 348 (625)
+..+|..+|+.+. ....+.+.+.+|.+|.. ..+..+|..+|+++.+..... ......++..|..-.
T Consensus 92 ~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 92 DKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred cHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 4566666666332 33455666667776665 346777777777777664433 344666666666531
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006937 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 416 (625)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 416 (625)
+...|...|.++-... ++.+...+|.+|.. ..++.+|..+|.++.+... ....+.++ ++...|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2347888888877664 67788888877765 3478899999999888766 77888888 666655
No 283
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.43 E-value=0.019 Score=55.52 Aligned_cols=135 Identities=11% Similarity=0.104 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 006937 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN---RGDLESAIACYE 249 (625)
Q Consensus 173 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~ 249 (625)
.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-+++++..+|++...|...-..... .-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999998888766554443 346778888888
Q ss_pred HHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 006937 250 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 329 (625)
Q Consensus 250 ~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 329 (625)
+++..-....... ..........+. ....++..+.....+.|..+.|+..++-.+++
T Consensus 127 ~~l~~L~~~~~~~-----------------~~~~~~~~~~e~------~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 127 KCLRALSRRRSGR-----------------MTSHPDLPELEE------FMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHhhccc-----------------cccccchhhHHH------HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 8876532211000 000000000000 01345666777777888888888888888877
Q ss_pred C
Q 006937 330 N 330 (625)
Q Consensus 330 ~ 330 (625)
+
T Consensus 184 n 184 (321)
T PF08424_consen 184 N 184 (321)
T ss_pred H
Confidence 4
No 284
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.35 E-value=0.021 Score=55.23 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCCCHHHHHhHHHHHHHhcC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006937 69 ALYEIVLEKDSGNVEAHIGKGICLQMQNM------------GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (625)
Q Consensus 69 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (625)
..|++.++.+|.+.++|..+....-..-. .+.-+.++++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999988876544322 456778899999999999999888888888888999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 137 ~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
+.+++++..+|++...|..+-. .-......-.+......|.+++..
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~----~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLD----FRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHH----HHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999999999998877654221 111112233566777777666653
No 285
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.27 E-value=0.33 Score=50.89 Aligned_cols=369 Identities=12% Similarity=-0.011 Sum_probs=210.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HcCCHHHHHHH
Q 006937 62 NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK---DEGRLVEAAES 138 (625)
Q Consensus 62 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 138 (625)
+.-++=+.-++.-+..++.+...+..|-..+...|++++-...-.++.++.|..+..|.....-.. ..++..++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344455566666677888888899999999999999998888888888888888887766553322 34778888999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHH
Q 006937 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-------YAPAYYNLGVVYSELMQYDTAL 211 (625)
Q Consensus 139 ~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~-------~~~~~~~la~~~~~~~~~~~A~ 211 (625)
|++++.-. .+...|...+..+...+..+...++++.....|.+++..-.. ....+...-..|...-..++-+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99998643 345556666666666666777778999999999998875322 2345555566666666667777
Q ss_pred HHHHHHHHhCCCCHH----HHHHHH--H-HHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHH
Q 006937 212 GCYEKAALERPMYAE----AYCNMG--V-IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 284 (625)
Q Consensus 212 ~~~~~al~~~~~~~~----~~~~la--~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (625)
.++...+... .+.+ .+.... . ......+++.|..-+.+.+.............-..+...-+.....|....
T Consensus 252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence 7777777654 2211 112221 1 122345566666655554433333222222222233333344445666666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCH-----------------------------
Q 006937 285 GVAYYKKALYYNWHYADAMYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCA----------------------------- 334 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~----------------------------- 334 (625)
-...+++++...+.+...|...+...-. ++-.+.+...+.+++...|-..
T Consensus 331 i~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls 410 (881)
T KOG0128|consen 331 IQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLS 410 (881)
T ss_pred HHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 6666666666655555555554433211 1111111111111111111100
Q ss_pred --HHHHHHHHHHHH-c-------------CCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 006937 335 --EACNNLGVIYKD-R-------------DNLDKAVECYQMALSI-KPNFSQSLNNLGVVYT-VQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 335 --~~~~~la~~~~~-~-------------~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 396 (625)
..+.+....|.+ . ..+..|..+|...... -......+...|.+.. .+++.+.|..+.+..+.
T Consensus 411 ~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 411 MTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT 490 (881)
T ss_pred HHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Confidence 001111111111 1 1233444444443333 1112334445555544 45678888888877766
Q ss_pred hCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 397 ANPTYAE-AYNNLGVLYRDAGSISLAIDAYEQCLKID 432 (625)
Q Consensus 397 ~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~ 432 (625)
....... .|.....+-...|+...+..++++|+..-
T Consensus 491 y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~ 527 (881)
T KOG0128|consen 491 YGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV 527 (881)
T ss_pred CCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC
Confidence 6554444 77777777788899999999888887643
No 286
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.024 Score=48.40 Aligned_cols=150 Identities=12% Similarity=0.025 Sum_probs=98.7
Q ss_pred HHHHHHhCCCHH---HHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHH
Q 006937 54 YANILRSRNKFV---DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC---AHTHCGILYK 127 (625)
Q Consensus 54 ~a~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~ 127 (625)
.|..|.+..+.+ +|-..|+++++.- ..+.. +.....++....++.+.. +...++..+.
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~---------------~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~v 100 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAV---------------QAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEV 100 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 344455544443 6777777776532 11222 444445555555554432 4566788888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 006937 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (625)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~ 207 (625)
..|++++|+..++.++....+ .. ..+.+-.+++.+...+|.+++|+..+...... .-.+......|.++...|+-
T Consensus 101 e~~~~d~A~aqL~~~l~~t~D-e~---lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKD-EN---LKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred hhccHHHHHHHHHHHHccchh-HH---HHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCch
Confidence 999999999999988864332 22 22445677888889999999999888664321 11234466789999999999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 006937 208 DTALGCYEKAALERPMY 224 (625)
Q Consensus 208 ~~A~~~~~~al~~~~~~ 224 (625)
++|...|+++++..+..
T Consensus 176 ~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 176 QEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHccCCh
Confidence 99999999999887543
No 287
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.22 E-value=0.22 Score=47.86 Aligned_cols=166 Identities=25% Similarity=0.297 Sum_probs=96.3
Q ss_pred HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cC
Q 006937 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL----MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RG 239 (625)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g 239 (625)
...+++..+...+.++-.. ........++.+|... .+..+|..+|..+. ...++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 3457788888888877652 3346777888887763 46788999999543 45667889999999987 45
Q ss_pred CHHHHHHHHHHHHhcCCCcH-HHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cC
Q 006937 240 DLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----ML 314 (625)
Q Consensus 240 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~~ 314 (625)
+..+|..+|+++.+...... .....++..+..-........+...|...|.++.... +..+...+|.+|.. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence 99999999999988754432 2233334333331000000112234555555554433 34444444444432 22
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 315 KFDMAIVFYELAFHFNPHCAEACNNLG 341 (625)
Q Consensus 315 ~~~~A~~~~~~al~~~~~~~~~~~~la 341 (625)
++.+|...|.++.+... ....+.++
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 44445555544444433 44444444
No 288
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.22 Score=46.43 Aligned_cols=206 Identities=14% Similarity=0.057 Sum_probs=130.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCC--------HHHHHhHHHHHHHhcCHHHHHHHHHHHHhc---CCC--c
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEK--DSGN--------VEAHIGKGICLQMQNMGRLAFDSFSEAVKL---DPQ--N 115 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~--~ 115 (625)
.++.++.....+++++++..|.+++.. .|.+ ......+|..+...|+..+-.......-.. -+. .
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 378888899999999999999999884 2222 246788999999999988766555443221 111 1
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh----C--C
Q 006937 116 ACAHTHCGILY-KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----D--P 188 (625)
Q Consensus 116 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----~--~ 188 (625)
......+-... ...+..+.-+..+..+++-....... +..-.+-..+...|...++|.+|+......++. + +
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRt-FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRT-FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 11222222222 22234445555555555543222221 112223456778889999999999988776643 2 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALER-----P-M-YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (625)
Q Consensus 189 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~-~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 257 (625)
.-.+++..-..+|+...+..+|...+..|-... | . ....-..-|.++....+|.-|..+|-++++-...
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 235667777888999999999988888775432 2 1 1222334466677778999999999999876543
No 289
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.09 E-value=0.031 Score=54.72 Aligned_cols=144 Identities=17% Similarity=0.046 Sum_probs=105.3
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHHH
Q 006937 292 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------------N------------PHC---AEACNNLGV 342 (625)
Q Consensus 292 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------~------------~~~---~~~~~~la~ 342 (625)
.+..+|-+.+++..++.++..+|+.+.|.+.+++++-. + +.| -.+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 34668999999999999999999999999988888632 1 112 234556677
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHc
Q 006937 343 IYKDRDNLDKAVECYQMALSIKPN-FSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDA 415 (625)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~-~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~ 415 (625)
.+.+.|-+..|+++.+-.+.++|. ++- +.+.+-....+.++++--++.++....... .-+..-+..+.++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 778889999999999999999988 655 444445555677777777777776554211 1235667777888888
Q ss_pred CCH---------------HHHHHHHHHHHhcCCCC
Q 006937 416 GSI---------------SLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 416 g~~---------------~~A~~~~~~al~~~p~~ 435 (625)
++. ++|...+.+|+...|.-
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 887 88888888888888753
No 290
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.29 Score=48.86 Aligned_cols=298 Identities=11% Similarity=-0.015 Sum_probs=165.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCCh--HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~--~~A~~~~~~~l~~~~~~~~~~~~la~~~ 201 (625)
.+.-..|+-+++...+.++-...+-....-......++.....+...++. +...+.+.......|.++......+..+
T Consensus 198 ~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l 277 (546)
T KOG3783|consen 198 SVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARIL 277 (546)
T ss_pred HHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHH
Confidence 33445566666766666655443222222111112222222333333332 4555566666677899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH-HHHHHhchhhh-
Q 006937 202 SELMQYDTALGCYEKAALERP--MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKVK- 277 (625)
Q Consensus 202 ~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~l~~~~~- 277 (625)
...|+.+.|+..++..++..- -..-.++.+|.++.-+.+|..|...+....+.+.-..-.+..++ -++..-.....
T Consensus 278 ~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~ 357 (546)
T KOG3783|consen 278 SIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQG 357 (546)
T ss_pred HHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHh
Confidence 999998888888888776111 12335677888888899999999999888777654433333333 22221111111
Q ss_pred hcCCHHHHHHHHHHHHh---hCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHc--
Q 006937 278 LEGDINQGVAYYKKALY---YNWHYAD---AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE--ACNNLGVIYKDR-- 347 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~---~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~la~~~~~~-- 347 (625)
..++.++|..+++.... ..|++.. .....+.-+...+. .++.... .+..++.++..-
T Consensus 358 ~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-------------~~~~~~la~P~~El~Y~Wngf~~ 424 (546)
T KOG3783|consen 358 AGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-------------LNASILLASPYYELAYFWNGFSR 424 (546)
T ss_pred cccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------------ccccccccchHHHHHHHHhhccc
Confidence 13355555444443322 2222111 11111111111110 1111111 123333333221
Q ss_pred CCHHHHHHHHHHHHc---c-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----cHHHHHHHHHHHHHc
Q 006937 348 DNLDKAVECYQMALS---I-KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NPT----YAEAYNNLGVLYRDA 415 (625)
Q Consensus 348 ~~~~~A~~~~~~al~---~-~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~ 415 (625)
...++.. -++..++ . ++++ .--+..+|.++..+|+...|..+|...++. ..+ .|.+++.+|.+|..+
T Consensus 425 ~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~ 503 (546)
T KOG3783|consen 425 MSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDL 503 (546)
T ss_pred CChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc
Confidence 1222222 1111111 1 2222 225667899999999999999999988853 111 267999999999999
Q ss_pred CC-HHHHHHHHHHHHhcCCCC
Q 006937 416 GS-ISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 416 g~-~~~A~~~~~~al~~~p~~ 435 (625)
|. ..++..++.+|-+...++
T Consensus 504 ~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 504 GGGLKEARALLLKAREYASDY 524 (546)
T ss_pred ccChHHHHHHHHHHHhhcccc
Confidence 99 999999999999877554
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.01 E-value=0.00064 Score=41.08 Aligned_cols=27 Identities=48% Similarity=0.797 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 405 YNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 405 ~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
+.+||.+|..+|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666666666777777666664433
No 292
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.99 E-value=0.0013 Score=38.81 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666777777777777777777666665
No 293
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.97 E-value=0.0076 Score=46.29 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=74.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCH---HHHHhHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCcHHHH
Q 006937 54 YANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNM-----------GRLAFDSFSEAVKLDPQNACAH 119 (625)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 119 (625)
+|..++.+|++-+|+++.+..+...+++. ..+..-|.++..+.. .-.+++.|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999888766 456667777765542 2358899999999999998888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 120 THCGILYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~ 145 (625)
+.+|.-+-....|+++..-.++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888777777788888888887765
No 294
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.97 E-value=0.0027 Score=57.60 Aligned_cols=77 Identities=25% Similarity=0.197 Sum_probs=58.1
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
+...+..|......|+.++|..+|+.+++..|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.++
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 44455667777777888888888888888888888888888887777777778888888888888877777666553
No 295
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.96 E-value=0.0017 Score=38.66 Aligned_cols=30 Identities=40% Similarity=0.639 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANP 399 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 399 (625)
++..+|.++..+|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555554
No 296
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.24 Score=49.40 Aligned_cols=95 Identities=6% Similarity=-0.079 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHH
Q 006937 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178 (625)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~ 178 (625)
+...+.+.......|+++...+..+..+...|+.+.|+..++..+. ..........++.+|.++.-+.+|..|-.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad 324 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-----IRMKQVKSLMVFERAWLSVGQHQYSRAAD 324 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555566667888888888888888888887777888877766 23333345557778888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHH
Q 006937 179 KYYEALKIDPHYAPAYYNLG 198 (625)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~la 198 (625)
.+....+.+.-+.-.|..++
T Consensus 325 ~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 325 SFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHHHHhhhhhhHHHHHHHH
Confidence 88887776554444444444
No 297
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.93 E-value=0.052 Score=53.16 Aligned_cols=74 Identities=22% Similarity=0.114 Sum_probs=50.8
Q ss_pred HHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC--------------------------CCcH---HHHHHHHHH
Q 006937 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------------------------PQNA---CAHTHCGIL 125 (625)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~---~~~~~la~~ 125 (625)
+..+|-+.+.++.++.++..+|+.+.|.+.+++++-.. +.|- .+++.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 46688899999999999999999999988888886321 1111 133444455
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 006937 126 YKDEGRLVEAAESYHKALSADPS 148 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~ 148 (625)
+.+.|-+..|.++.+-.+.++|.
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCC
Confidence 55666666666666666666666
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.91 E-value=0.082 Score=44.07 Aligned_cols=100 Identities=12% Similarity=-0.045 Sum_probs=83.0
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
-...++.........++.+++..++..+--..|+.++.-..-|..++..|++.+|+..|+.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 35668888888899999999999999998899999999999999999999999999999999888999998888999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC
Q 006937 127 KDEGRLVEAAESYHKALSADP 147 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~ 147 (625)
...|+.+ =..+-..+++..+
T Consensus 89 ~~~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 89 YALGDPS-WRRYADEVLESGA 108 (160)
T ss_pred HHcCChH-HHHHHHHHHhcCC
Confidence 8888754 2223344444443
No 299
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.87 E-value=0.0055 Score=59.16 Aligned_cols=142 Identities=12% Similarity=0.022 Sum_probs=103.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 312 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 391 (625)
Q Consensus 312 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 391 (625)
..|+.-.|-+-+..++...|..+......+.+...+|.|+.|...+..+-..-.....+...+-.-...+|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 45777777777777777777777777777888888888888877776555443344445555556667788888888888
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCC
Q 006937 392 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 453 (625)
Q Consensus 392 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 453 (625)
+-.+...-+++++...-+-.-..+|-+++|..++++.+.++|....-+.|.+....|...|+
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 77777666667766666666677788888888888888888887777777766666776665
No 300
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.58 Score=46.29 Aligned_cols=347 Identities=13% Similarity=0.025 Sum_probs=187.8
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcC-HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
.+...|+.......+.+.+.+--.+|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|...-.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 3778888888888888999999999999999999999999999998887776 999999999999999999877644322
Q ss_pred HHHH---------------cCCHH-------HH-----------------H--HHH--------------HHHHhcCCCC
Q 006937 125 LYKD---------------EGRLV-------EA-----------------A--ESY--------------HKALSADPSY 149 (625)
Q Consensus 125 ~~~~---------------~g~~~-------~A-----------------~--~~~--------------~~al~~~~~~ 149 (625)
+-.. .++.+ .+ + ... +-.....|.+
T Consensus 183 mEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~n 262 (568)
T KOG2396|consen 183 MELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDN 262 (568)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 1110 00000 00 0 000 0011124444
Q ss_pred HHHHHHHHHHHH--------------HhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHH--cC-CHHHH
Q 006937 150 KPAAECLAIVLT--------------DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA--YYNLGVVYSE--LM-QYDTA 210 (625)
Q Consensus 150 ~~~~~~~a~~~~--------------~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~--~~~la~~~~~--~~-~~~~A 210 (625)
+..+..++.-.. ..+.. ...+-+....+|+.+++.-+...-- +.....-... .| ....-
T Consensus 263 p~~~~~laqr~l~i~~~tdl~~~~~~~~~~~--~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~ 340 (568)
T KOG2396|consen 263 PLLWDDLAQRELEILSQTDLQHTDNQAKAVE--VGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHT 340 (568)
T ss_pred CccHHHHHHHHHHHHHHhhccchhhhhhchh--cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 444433332110 01100 0011222224444444433332111 1111111111 11 22333
Q ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCcHHHHhhHHHHHHH---------------
Q 006937 211 LGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAI-ACYERCLAVSPNFEIAKNNMAIALTD--------------- 271 (625)
Q Consensus 211 ~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~--------------- 271 (625)
...++++.+. .+..+.-+..+..++...+...++. ......+. ++...+.........
T Consensus 341 ~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~---~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~ 417 (568)
T KOG2396|consen 341 MCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFR---DSGKMWQLKLQVLIESKSDFQMLFEELFNH 417 (568)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhc---chHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 3444444332 2333444444444444433322221 11111111 111111110000000
Q ss_pred ----hchh------hhhcCC-HHHHH-H-HHHHHHhh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q 006937 272 ----LGTK------VKLEGD-INQGV-A-YYKKALYY-NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 337 (625)
Q Consensus 272 ----l~~~------~~~~~~-~~~A~-~-~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 337 (625)
++.. ...+++ ..... . ++..+... .++....-..+-..+.+.+-+.+|...|.+...+.|-+...+
T Consensus 418 ~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~ 497 (568)
T KOG2396|consen 418 LRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLF 497 (568)
T ss_pred HHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHH
Confidence 0000 000111 11111 1 11111111 233344455566777888999999999999999998887777
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 338 NNLGVIYKD--RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 338 ~~la~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
..+..+-.. .-+..-+..+|+.++.....+++.|...-..-...|..+.+-..+.+|++.
T Consensus 498 r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 498 RKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 666554332 235788899999999988899999999888888999999998888888764
No 301
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.83 E-value=0.0045 Score=56.19 Aligned_cols=64 Identities=28% Similarity=0.386 Sum_probs=35.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
.+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+|+.++|.+.++..|+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 3445555555555555555555555555555555555555555555555555555555554443
No 302
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.79 E-value=0.1 Score=46.85 Aligned_cols=196 Identities=12% Similarity=-0.018 Sum_probs=119.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCH----HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCC-----Cc-HHHHHHHHHHHHHc
Q 006937 60 SRNKFVDALALYEIVLEKDSGNV----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-----QN-ACAHTHCGILYKDE 129 (625)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~-~~~~~~la~~~~~~ 129 (625)
...+.++|+.-|+++++..+... .++-.+..+.+++|++++-+..|.+.+..-. +. ......+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34589999999999999988754 4677788899999999999999988775311 11 11111111111122
Q ss_pred CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC------------CCHHHHH
Q 006937 130 GRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------HYAPAYY 195 (625)
Q Consensus 130 g~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~------------~~~~~~~ 195 (625)
.+.+--.+.|+..+..- ..+...|+. .-..+|.+++..+.|.+-.+.+.+.-.... .-.++|.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFK---TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFK---TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeee---ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 33333333444333211 111111111 133577777777888777777666543311 1234555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALERPMY--AEAY----CNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 258 (625)
.-...|..+.+..+-...|++++.+...- +.+. -.=|..+.+.|++++|..-|-++++.....
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 55677888888888888999998765332 2221 122556788899999999888888765543
No 303
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.77 E-value=0.82 Score=47.05 Aligned_cols=175 Identities=17% Similarity=0.099 Sum_probs=88.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH---------HHHHHHHHH
Q 006937 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---------CAHTHCGIL 125 (625)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~ 125 (625)
...+...=..++|+++ ++.+| ++..|..+|......-.++-|...|-+.-.. +.-. .--...+.+
T Consensus 670 ~~~Lve~vgledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei 743 (1189)
T KOG2041|consen 670 VMNLVEAVGLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEI 743 (1189)
T ss_pred HHHHHHHhchHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhH
Confidence 3344455556777766 44455 6788999998888888888888777664321 1100 001223444
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHH
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSE 203 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~ 203 (625)
-.--|++++|.+.|-.+-+. +.. ...+.+.|++-...++++..-.-+ .....++.++|..+..
T Consensus 744 ~~~~g~feeaek~yld~drr---DLA------------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~ 808 (1189)
T KOG2041|consen 744 SAFYGEFEEAEKLYLDADRR---DLA------------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE 808 (1189)
T ss_pred hhhhcchhHhhhhhhccchh---hhh------------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH
Confidence 44557777777776543211 000 011222344444443333211110 1113344555555555
Q ss_pred cCCHHHHHHHHHHH----------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 204 LMQYDTALGCYEKA----------------------ALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (625)
Q Consensus 204 ~~~~~~A~~~~~~a----------------------l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (625)
...+++|.++|.+. ...-|++...+-.+|..+...|--++|.+.|-+
T Consensus 809 ~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 809 MMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 55555555554432 222355555566666666666666666665544
No 304
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.69 E-value=0.0032 Score=37.06 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=12.7
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 006937 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (625)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (625)
++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34444444444444444444444444444
No 305
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.63 E-value=1.3 Score=47.37 Aligned_cols=125 Identities=8% Similarity=-0.086 Sum_probs=65.7
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
.+..+..|....+.|++..+.....++ ...|- ..+...-......+.. ....+...++.+|+.+..-........
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~~l~ 107 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSRFVN 107 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 467888999999999998887766653 33443 2222222222222211 122445556667776655444443332
Q ss_pred ---HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCC
Q 006937 128 ---DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (625)
Q Consensus 128 ---~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~ 188 (625)
+.+++..-+.++ ...|.+... .+..+......|+.++|.....++.....
T Consensus 108 ~La~~~~w~~~~~~~----~~~p~~~~~-------~c~~~~A~~~~G~~~~A~~~a~~lW~~g~ 160 (644)
T PRK11619 108 ELARREDWRGLLAFS----PEKPKPVEA-------RCNYYYAKWATGQQQEAWQGAKELWLTGK 160 (644)
T ss_pred HHHHccCHHHHHHhc----CCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCC
Confidence 344555444422 123554443 23344455666777777666666554433
No 306
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.57 E-value=0.24 Score=44.63 Aligned_cols=194 Identities=16% Similarity=0.161 Sum_probs=116.0
Q ss_pred hcCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhHH
Q 006937 95 QNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSAD-----PSYKPAAECLAIVLTDLGT 165 (625)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~a~~~~~l~~ 165 (625)
..+.++|+..|++++++.+... .++..+..+++++|++++-.+.|.+.+..- .+..+-. ...+-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs------IN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS------INSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHH------HHHHHH
Confidence 3478999999999999988653 477788899999999999999998887531 1111110 001101
Q ss_pred HHHHhCChHHHHHHHHHHHhh--CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------CCHHH
Q 006937 166 SLKLAGNTQDGIQKYYEALKI--DPHYAP----AYYNLGVVYSELMQYDTALGCYEKAALERP------------MYAEA 227 (625)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~--~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------~~~~~ 227 (625)
.-....+.+--.+.|+..++. +..+.. .-..+|.+|+..+.|.+-.+.+++.-+... ...++
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 111122222233333333222 112222 234688999999988888777777654321 12345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
|..-..+|..+.+..+-...|++++.+...-+.. ..++.+-..-|..+...|++++|-.-|-++.+.
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 5555677777777777777888887665433321 123444444456666677777776666666544
No 307
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.56 E-value=0.0067 Score=40.00 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
.++.+|..+.++|++++|..+.+.++++.|+|..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566667777777777777777777777777666543
No 308
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.52 E-value=0.038 Score=41.59 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHH
Q 006937 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN--ACAHTHCGILYKDEGRLVEAA 136 (625)
Q Consensus 67 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~ 136 (625)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+.-.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv 78 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLV 78 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHH
Confidence 3566778888899999999999999999999999999999998887764 444445555555555443333
No 309
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.74 Score=43.14 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHH
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 269 (625)
.+..+|...++|.+|+......+.. .+.-.+++..-..+|....+..+|...+..+-.....-.-.....+.+-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 3455666666666666655554431 1122344444555566666666666555554332111100111122233
Q ss_pred HHhchhhhhcCCHHHHHHHHHHHHhh
Q 006937 270 TDLGTKVKLEGDINQGVAYYKKALYY 295 (625)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~~~~~~l~~ 295 (625)
..-|-++....+|..|..+|-++++-
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred HhccceeecccccchHHHHHHHHHcc
Confidence 33344444455566666665555543
No 310
>PRK10941 hypothetical protein; Provisional
Probab=96.46 E-value=0.021 Score=52.93 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4455566666677777777777777777777776666677777777777777777777777777666553
No 311
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.44 E-value=0.79 Score=46.73 Aligned_cols=28 Identities=21% Similarity=0.005 Sum_probs=20.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIV 74 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 74 (625)
....|-.+|...+..=+++-|.+.|.++
T Consensus 584 v~~DW~~LA~~ALeAL~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 584 TDTDWRELAMEALEALDFETARKAYIRV 611 (1081)
T ss_pred ecchHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3456777788888888888888877765
No 312
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.39 E-value=0.74 Score=47.34 Aligned_cols=253 Identities=14% Similarity=0.038 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---HHhHHHHHHhCChH
Q 006937 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL---TDLGTSLKLAGNTQ 174 (625)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~---~~l~~~~~~~~~~~ 174 (625)
.++|+++.+ .+| ++..|..++......-.++-|...|-+.-.. +.-. ....+..++ ...+.+..--|.++
T Consensus 679 ledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik-~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIK-LVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchh-HHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 455555443 344 6789999999888888888888877665322 1110 001111111 12333444458999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (625)
Q Consensus 175 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (625)
+|.+.|-.+-..+ .-..++.+.|+|-...++++..-... .....++.++|..+..+..+++|.++|...-
T Consensus 752 eaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred Hhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998886543322 11245567777777766665432211 1235689999999999999999999998763
Q ss_pred hcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 006937 253 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 332 (625)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 332 (625)
... +...+++.+ ..+++- +.....-|++...+-.+|..+...|--++|.+.|-+.- .|.
T Consensus 824 ~~e--------~~~ecly~l-------e~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk 882 (1189)
T KOG2041|consen 824 DTE--------NQIECLYRL-------ELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK 882 (1189)
T ss_pred chH--------hHHHHHHHH-------HhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH
Confidence 221 233444443 233332 33334457778888888999999998888888775431 111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 333 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 394 (625)
Q Consensus 333 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 394 (625)
+ .......++++.+|.+..++-- -|.-.......+.-+...++.-+|++..+++
T Consensus 883 ---a---Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 ---A---AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred ---H---HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 1123344456666666544321 1222223333344445556666666666555
No 313
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.29 Score=49.37 Aligned_cols=133 Identities=20% Similarity=0.145 Sum_probs=108.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 313 MLKFDMAIVFYELAFHFNPHCAEACNN--LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (625)
Q Consensus 313 ~~~~~~A~~~~~~al~~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 390 (625)
.+....++..+...+.+++.++..+.. +...+...+....+.-.+..++..+|++..+..+++......|....+...
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 344445677777777788888877544 477777788888999999999999999999999999998888877776665
Q ss_pred HHH-HHHhCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHH
Q 006937 391 IEK-AIAANPTYAEAYNNL------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 445 (625)
Q Consensus 391 ~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 445 (625)
+.. +....|.+.+....+ +.....+|+..++....+++..+.|.++.....++.+
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 555 888889887766555 8999999999999999999999999998777766555
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.38 E-value=0.23 Score=40.67 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=72.9
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (625)
...++.........++..++..++..+--..|+.++.-..-|..+...|++.+|+..|+...+..+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 44566777777779999999999998888899999999999999999999999999999988888787888888888888
Q ss_pred HcCCHH
Q 006937 128 DEGRLV 133 (625)
Q Consensus 128 ~~g~~~ 133 (625)
.+|+.+
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 888754
No 315
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.37 E-value=0.095 Score=43.70 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006937 336 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 415 (625)
Q Consensus 336 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 415 (625)
.+..+..+-...++.+++...+...--+.|+.++.-..-|+++...|++.+|+..|+.+.+..|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34444455555666677777776666667777777777777777777777777777777666676676666777777777
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 006937 416 GSISLAIDAYEQCLKIDP 433 (625)
Q Consensus 416 g~~~~A~~~~~~al~~~p 433 (625)
|+.. =..+-.++++..+
T Consensus 92 ~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 92 GDPS-WRRYADEVLESGA 108 (160)
T ss_pred CChH-HHHHHHHHHhcCC
Confidence 7653 2333444555544
No 316
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.37 E-value=0.17 Score=39.23 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=55.9
Q ss_pred HHcCCHHHHHHHHHHHHccCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCcH---
Q 006937 345 KDRDNLDKAVECYQMALSIKPN------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYA--- 402 (625)
Q Consensus 345 ~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~--- 402 (625)
+..|-|++|...+.++++.... +.-++..|+..+..+|+|++++...++++.. +.+..
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 3446677777777776665321 1235666777777777777776666666543 44433
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 403 -EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 403 -~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
.+-++.+..+..+|+.++|+..|+++-++
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34567788889999999999999988764
No 317
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.34 E-value=0.042 Score=41.34 Aligned_cols=48 Identities=29% Similarity=0.303 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006937 388 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 388 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 435 (625)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 456777788888888888888888888888888888888888887776
No 318
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.34 E-value=0.019 Score=37.92 Aligned_cols=34 Identities=15% Similarity=-0.040 Sum_probs=15.9
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHH
Q 006937 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (625)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (625)
++.+|..+++.|+|++|..+.+.+++..|++..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4444445555555555555555555555544443
No 319
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.32 E-value=0.0086 Score=36.07 Aligned_cols=25 Identities=48% Similarity=0.745 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 371 LNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
+.++|.+|...|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555555555533
No 320
>PRK10941 hypothetical protein; Provisional
Probab=96.25 E-value=0.079 Score=49.23 Aligned_cols=68 Identities=19% Similarity=0.106 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 006937 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (625)
Q Consensus 194 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 261 (625)
..++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|..-++..++..|+++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34445555666666666666666666666666666666666666666666666666666666655544
No 321
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.06 E-value=0.079 Score=47.54 Aligned_cols=92 Identities=25% Similarity=0.238 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHH-------HHHHHHHHHhhCCC------CHHHHH
Q 006937 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD-------GIQKYYEALKIDPH------YAPAYY 195 (625)
Q Consensus 129 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~-------A~~~~~~~l~~~~~------~~~~~~ 195 (625)
...+++|++.|.-++-...-.......+|.++..++.+|...|+.+. |++.|++++..... ...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 34566666666665532111111111346667777777777777443 33344444333211 134555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 196 NLGVVYSELMQYDTALGCYEKAALE 220 (625)
Q Consensus 196 ~la~~~~~~~~~~~A~~~~~~al~~ 220 (625)
.+|.+..+.|++++|.++|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 5666666666666666666666554
No 322
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.05 E-value=0.089 Score=40.59 Aligned_cols=103 Identities=13% Similarity=-0.007 Sum_probs=58.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC
Q 006937 306 LGVAYGEMLKFDMAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 382 (625)
Q Consensus 306 la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 382 (625)
++.-++..|++-+|+++.+..+..++++. ..+..-|.++..+ +...+..+...-+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yL--------- 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYL--------- 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHH---------
Confidence 35566777777777777777777766554 3334444444322 22222111121111
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 383 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 383 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
-.+++++.++..+.|..+..++.+|.-+.....|+++..-.+++|.+
T Consensus 61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 23566677777777777667777766665556666666666666654
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.99 E-value=0.012 Score=34.18 Aligned_cols=31 Identities=39% Similarity=0.673 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 434 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 434 (625)
++..+|.++..+|++++|...|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566677777777777777777777766664
No 324
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.97 E-value=0.014 Score=50.97 Aligned_cols=66 Identities=29% Similarity=0.504 Sum_probs=57.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 376 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
....+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|++......
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~ 68 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhh
Confidence 345677889999999999999999999999999999999999999999999999999988655433
No 325
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.92 E-value=3.7 Score=45.59 Aligned_cols=134 Identities=14% Similarity=0.069 Sum_probs=88.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAE---CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~ 199 (625)
..++...+.|++|+..|++.-...|...+.+. ..+..+...+........+.+|+..|++.- -.|..+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 35677788999999999999999988665433 233333333322222235778888887643 35677788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCC
Q 006937 200 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----GDLESAIACYERCLAVSPN 257 (625)
Q Consensus 200 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~ 257 (625)
+|..+|++++-++++.-+++..|+.|..-...-.+..++ ..-..|....--++...|.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPE 623 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999988765433332222221 1223444444455555554
No 326
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=1.3 Score=40.41 Aligned_cols=216 Identities=14% Similarity=-0.006 Sum_probs=119.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC--------CCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 52 LSYANILRSRNKFVDALALYEIVLEKDS--------GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
+++|+...+.+++++|+..|.+++...- +.......++..|...|++..--+.....- +++....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr-------e~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR-------EAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH-------HHHHHhc
Confidence 7889999999999999999999987621 122456778888888887765443333221 1111111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (625)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 203 (625)
-.+..+..+..++..|..++.......+...+. +=|.+-=+..++ ...-..+..++++
T Consensus 80 --------k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~i---------ewA~rEkr~fLr-----~~Le~Kli~l~y~ 137 (421)
T COG5159 80 --------KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALI---------EWADREKRKFLR-----LELECKLIYLLYK 137 (421)
T ss_pred --------chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH---------HHHHHHHHHHHH-----HHHHHHHHHHHHh
Confidence 112233444444444443332111111111110 001110011111 1233456778889
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhh
Q 006937 204 LMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 277 (625)
Q Consensus 204 ~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (625)
.|+|.+|+......+.. .++-..++..-..+|....+..++...+..+-.....-.-.....+.+-..-|-...
T Consensus 138 ~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhc 217 (421)
T COG5159 138 TGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHC 217 (421)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceee
Confidence 99999999888776532 344566777778888888888887777766543321111111122333444455666
Q ss_pred hcCCHHHHHHHHHHHHhhC
Q 006937 278 LEGDINQGVAYYKKALYYN 296 (625)
Q Consensus 278 ~~~~~~~A~~~~~~~l~~~ 296 (625)
...++..|..+|-++++-.
T Consensus 218 dd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 218 DDRDYKTASSYFIEALEGF 236 (421)
T ss_pred ccccchhHHHHHHHHHhcc
Confidence 6778888888888887654
No 327
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.81 E-value=2.6 Score=43.25 Aligned_cols=49 Identities=8% Similarity=-0.115 Sum_probs=28.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHH
Q 006937 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV 109 (625)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (625)
..+...|.+++|...----+. ..-|..+|......=+++-|.+.|.++-
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVR 612 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVR 612 (1081)
T ss_pred hhhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 356778888877654211111 1235566666666667777777776653
No 328
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.71 E-value=0.5 Score=36.76 Aligned_cols=95 Identities=20% Similarity=0.122 Sum_probs=71.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------------CHHHHHhHHHHHHHhcCHHHHHHHHHHHHh-------c
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSG------------NVEAHIGKGICLQMQNMGRLAFDSFSEAVK-------L 111 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~ 111 (625)
.+..|...+..|-|++|...++++++.... ++-++..++..+..+|+|++++....+++. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 345677888999999999999999875321 234677888999999999998888777775 3
Q ss_pred CCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 112 DPQNAC----AHTHCGILYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 112 ~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (625)
+.+... +.+..+..+...|+.++|+..|+.+-+.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444433 4567788889999999999999988653
No 329
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.67 E-value=1.1 Score=37.69 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=95.7
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCC
Q 006937 310 YGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGK 383 (625)
Q Consensus 310 ~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~ 383 (625)
+...++.++|+..|...-+..-.. .-+....+.+..+.|+...|+..|..+-.-.|.- ..+...-+.++...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456678889999888877665443 3456778889999999999999999887654332 1245566777888899
Q ss_pred HHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 384 MDAAAEMIEKAI-AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 384 ~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
|++-....+..- ..+|-...+...||..-.+.|++.+|...|.+... +.+.+....+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirq 205 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQ 205 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHH
Confidence 988776665442 22455567888899999999999999999999887 3333433333
No 330
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.65 E-value=0.14 Score=40.85 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 367 FSQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 367 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
.....+++++++.... +..+.+.+++..++ -.|+. -+..+.|+..+.+.|+|++++.+.+..++..|+|.++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3567778888887655 45667888888886 44433 467788888899999999999999999999999887753
No 331
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.57 E-value=0.25 Score=42.90 Aligned_cols=103 Identities=11% Similarity=-0.110 Sum_probs=74.6
Q ss_pred HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006937 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (625)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 159 (625)
.++..+|..|.+.|+.++|++.|.++...... ..+.++.+..+....+++........++-..... ...+.....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 57889999999999999999999998776543 2456778888889999999999998888665333 2223334444
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
-...|..+...++|.+|.+.|-.+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 555566666677777777777665443
No 332
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.56 E-value=0.12 Score=57.03 Aligned_cols=162 Identities=20% Similarity=0.190 Sum_probs=125.6
Q ss_pred HHhchhhhhcCCHHHHHH------HHH-HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCH
Q 006937 270 TDLGTKVKLEGDINQGVA------YYK-KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCA 334 (625)
Q Consensus 270 ~~l~~~~~~~~~~~~A~~------~~~-~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~ 334 (625)
...|......+.+.++.+ ++. ..-.+.|.....+..++.++...+++++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 344444455666776666 444 233457788889999999999999999999988877654 35567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------
Q 006937 335 EACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------- 399 (625)
Q Consensus 335 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------- 399 (625)
..+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+++.|+..+.
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 78889999999999999999999988865 355556778899999999999999999999998642
Q ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 400 -TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 400 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
.....+..+++++..++++..|....+....+
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 23456777888888888888888877766554
No 333
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=1.1 Score=45.82 Aligned_cols=100 Identities=21% Similarity=0.167 Sum_probs=86.4
Q ss_pred HHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 006937 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 228 (625)
Q Consensus 155 ~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 228 (625)
.+-.++.+-+.-.++..+|..+++.|...+..-|.+ ......++.||..+.+.+.|.+++++|-+.+|.++-..
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 344456777888889999999999999998876654 45678899999999999999999999999999999988
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 229 CNMGVIYKNRGDLESAIACYERCLAV 254 (625)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~al~~ 254 (625)
..+-.+....++-++|+.+.......
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 88889999999999999998877654
No 334
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.45 E-value=0.16 Score=45.62 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSI 363 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 363 (625)
..+.+.+|.+..+.|++++|..+|.+++..
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 345566666666666666666666666654
No 335
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.41 E-value=1.4 Score=37.13 Aligned_cols=145 Identities=17% Similarity=0.105 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCH--HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCC--c--HHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNV--EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ--N--ACAHTHC 122 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~l 122 (625)
...+..|..+.+.++.++|+..|..+-+..-.+. -+.+..+.+....|+...|+..|..+-...|- - -.+...-
T Consensus 59 gd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 59 GDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 3456667777778888888888888766544433 35566677777888888888888876654332 1 1234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (625)
+.++...|-|++-....+..-. +.++. ...+-..||...++.|++.+|.+.|.++.. +...+....+.+.+
T Consensus 139 a~lLvD~gsy~dV~srvepLa~--d~n~m----R~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAG--DGNPM----RHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHhccccHHHHHHHhhhccC--CCChh----HHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 5666677777766555443321 11111 011234455556666666666666666554 33334444444433
No 336
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.38 E-value=0.14 Score=50.59 Aligned_cols=105 Identities=14% Similarity=0.046 Sum_probs=90.9
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHh---cCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAHTHC 122 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (625)
..++..+..|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++.+
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~l 451 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRL 451 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHH
Confidence 45566666677777777889999999999999999999999999988765 566778888899999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYK 150 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (625)
+.++...+++.+|+.+...+....|.+.
T Consensus 452 a~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 452 ARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 9999999999999999998888888543
No 337
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.36 E-value=0.34 Score=39.68 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006937 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 418 (625)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 418 (625)
.++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++...+..+..+-..-.++.|+..+|+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 455555555555555555555555555555555555555555555555555544455555555555555554
No 338
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.32 E-value=0.25 Score=54.66 Aligned_cols=137 Identities=16% Similarity=0.068 Sum_probs=97.8
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHH------HHHHH-HHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc-------
Q 006937 46 FEGKDALSYANILRSRNKFVDALA------LYEIV-LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------- 111 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 111 (625)
..++...+.+......|.+.+|.+ ++... -...|.....+..++..+...|++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 567788899999999999998888 55533 2357888899999999999999999999988877643
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHh
Q 006937 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (625)
Q Consensus 112 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 185 (625)
.|+....+..++...+..++...|+..+.++..+ .|..+.. +.+..+++.++...++++.|+++.+.++.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~----a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT----ALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch----hhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888888888777654 2222221 22344455555555666666666666655
Q ss_pred h
Q 006937 186 I 186 (625)
Q Consensus 186 ~ 186 (625)
.
T Consensus 1086 ~ 1086 (1236)
T KOG1839|consen 1086 K 1086 (1236)
T ss_pred H
Confidence 4
No 339
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.28 E-value=0.5 Score=37.83 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006937 334 AEACNNLGVIYKDRD---NLDKAVECYQMALS-IKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 407 (625)
Q Consensus 334 ~~~~~~la~~~~~~~---~~~~A~~~~~~al~-~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 407 (625)
....+++++++.... +..+.+.+++..++ -.|. .-+..+.++..+.+.|+|++++.+.+..++..|++.++...
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 445556666665543 34556666666665 3332 23466666777777777777777777777777776665443
No 340
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.25 E-value=0.036 Score=48.48 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=39.0
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006937 92 LQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (625)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (625)
....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 345566666666666666666666666666666666666666666666666666666543
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.21 E-value=0.038 Score=31.82 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=12.8
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 006937 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDP 113 (625)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (625)
+..+|.++...|++++|+..++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444444444444444444444444433
No 342
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.12 E-value=4 Score=40.78 Aligned_cols=81 Identities=12% Similarity=-0.022 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (625)
Q Consensus 172 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (625)
.+.-....+.+++... .+-.+++.++.+|... ..++-....++.++.+-++...-..++..|.+ ++.+.+..+|.++
T Consensus 81 k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 81 KNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHH
Confidence 3344455666666654 4567888999999988 56778888999999988888888888888877 8889999999998
Q ss_pred HhcC
Q 006937 252 LAVS 255 (625)
Q Consensus 252 l~~~ 255 (625)
+...
T Consensus 158 ~yrf 161 (711)
T COG1747 158 LYRF 161 (711)
T ss_pred HHHh
Confidence 7653
No 343
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.88 E-value=0.43 Score=41.51 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (625)
Q Consensus 192 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (625)
.++..+|..|.+.|+.++|++.|.++.+.... ..+.++.+..+....+++.....+..++-...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45667778888888888888888877665433 24566677777777788887777777765543
No 344
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.87 E-value=0.085 Score=52.02 Aligned_cols=84 Identities=18% Similarity=0.112 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 426 (625)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 426 (625)
...|+..|.+++...|.....+.+.+.++.+. |+.-.|+.....+++++|....+++.|+.++..++++.+|+++..
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 34445555555555555555555555554443 234444444555555555555555555555555555555555555
Q ss_pred HHHhcCC
Q 006937 427 QCLKIDP 433 (625)
Q Consensus 427 ~al~~~p 433 (625)
.+....|
T Consensus 470 alq~~~P 476 (758)
T KOG1310|consen 470 ALQMSFP 476 (758)
T ss_pred HHhhcCc
Confidence 4444444
No 345
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=2.6 Score=42.71 Aligned_cols=104 Identities=17% Similarity=0.084 Sum_probs=73.5
Q ss_pred hCCCHHHHHHHHHHHHHc------------CCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc----------------
Q 006937 60 SRNKFVDALALYEIVLEK------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---------------- 111 (625)
Q Consensus 60 ~~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------- 111 (625)
....|++|...|.-+... .|-+.+.++.++.+...+|+.+-|....++++=.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345677888877776654 4666789999999999999999888888777632
Q ss_pred -----CCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Q 006937 112 -----DPQNAC---AHTHCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLTDL 163 (625)
Q Consensus 112 -----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~l 163 (625)
.|.|-. +++..-..+.+.|-+..|.++++-+++++|. ++-....+..++...
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 223322 2333345566789999999999999999998 666544444434333
No 346
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=4.6 Score=41.49 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la 198 (625)
+.+-|.-.++..+|..+++.|...+...|.+...... +.+...+..+|....+.+.|.++++++-+.+|.++-......
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3445667788899999999999999988877655443 888999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 006937 199 VVYSELMQYDTALGCYEKAALE 220 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~ 220 (625)
.+....+.-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999998887654
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.49 E-value=0.4 Score=34.32 Aligned_cols=64 Identities=14% Similarity=-0.010 Sum_probs=45.8
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhH---HHHHHHhcCHHHHHHHHHHHHh
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK---GICLQMQNMGRLAFDSFSEAVK 110 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~ 110 (625)
.+...++.|..++...+.++|+..++++++..++...-+..+ ..++...|+|.+.+.+..+=+.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888888888888877766544444 4556777888877776654443
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.34 E-value=0.1 Score=32.49 Aligned_cols=29 Identities=38% Similarity=0.554 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
.++.++|.+|..+|++++|..++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777764
No 349
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.21 E-value=0.09 Score=48.23 Aligned_cols=78 Identities=6% Similarity=0.041 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhh
Q 006937 364 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN-LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 364 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
.++++..|...+....+.|.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.+++.++|+++..|..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34444444444444444444444445555555555555444433 2333444455555555555555555555544443
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.13 E-value=1.9 Score=43.67 Aligned_cols=165 Identities=15% Similarity=0.039 Sum_probs=94.6
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHH--HHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 49 KDALSYANILRSRNKFVDALALYE--IVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
+.-.-.-+....+|+++++....+ +++..-| .......+..+.++|..+.|+.... ++...+ .+.
T Consensus 262 d~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF---eLA 328 (443)
T PF04053_consen 262 DLSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------DPDHRF---ELA 328 (443)
T ss_dssp -HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHH---HHH
T ss_pred CHHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHh---HHH
Confidence 334445566778999999888775 2222222 3445667777888888888876543 344444 445
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 006937 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (625)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~ 206 (625)
.+.|+++.|.+..++. ++.. .|..+|.....+|+++-|.++|+++- -+..|..+|...|+
T Consensus 329 l~lg~L~~A~~~a~~~-----~~~~-------~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL-----DDPE-------KWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGD 388 (443)
T ss_dssp HHCT-HHHHHHHCCCC-----STHH-------HHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-
T ss_pred HhcCCHHHHHHHHHhc-----CcHH-------HHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCC
Confidence 6788988888765432 2333 28888888899999999999988753 24456667777888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (625)
Q Consensus 207 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (625)
.+.-.+..+.+......+ ..-.++...|+.++.++.+.+.
T Consensus 389 ~~~L~kl~~~a~~~~~~n-----~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 389 REKLSKLAKIAEERGDIN-----IAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHHTT-HH-----HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHH-----HHHHHHHHcCCHHHHHHHHHHc
Confidence 766666665555443321 1223444556667666666553
No 351
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.81 E-value=0.19 Score=46.26 Aligned_cols=79 Identities=13% Similarity=0.027 Sum_probs=63.0
Q ss_pred CcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHh-HHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 006937 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG-KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (625)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (625)
..++..|...+......|-|.+--.+|.++++.+|.+++.|.. .+.-+...++++.+...|.++++.+|+++..|...-
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 3467778888888888888888888888888888888888876 455577788888888888888888888887776543
No 352
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.80 E-value=0.17 Score=31.49 Aligned_cols=29 Identities=38% Similarity=0.657 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45667777777777777777777777664
No 353
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.77 E-value=4.5 Score=41.08 Aligned_cols=103 Identities=12% Similarity=0.112 Sum_probs=74.2
Q ss_pred hCChHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----h------------
Q 006937 170 AGNTQDGIQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL-----E------------ 220 (625)
Q Consensus 170 ~~~~~~A~~~~~~~l~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~------------ 220 (625)
...|++|...|.-+... .|-+...+..++.+...+|+.+.|....++++= .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 35577888888777654 566788999999999999999998888888752 1
Q ss_pred ----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHHh
Q 006937 221 ----RPMYAE---AYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDL 272 (625)
Q Consensus 221 ----~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~l 272 (625)
.|.+-. +++..-..+.+.|-+..|.++++-.+.++|. ++.....+...|...
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 122222 3334445566789999999999999999998 765554444444443
No 354
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.58 E-value=12 Score=40.11 Aligned_cols=77 Identities=10% Similarity=-0.073 Sum_probs=48.3
Q ss_pred HHHHHHHcCCCCHHHHHhHHHHHHH---hcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 70 LYEIVLEKDSGNVEAHIGKGICLQM---QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (625)
Q Consensus 70 ~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 146 (625)
-+...++.+|+.+..-......... .+++..-+.+ ....|.+.......+......|+.++|....+++-...
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~----~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF----SPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh----cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 4445566677777655554444433 4455544442 22347778877888888889999888888777776554
Q ss_pred CCCH
Q 006937 147 PSYK 150 (625)
Q Consensus 147 ~~~~ 150 (625)
...+
T Consensus 160 ~~~p 163 (644)
T PRK11619 160 KSLP 163 (644)
T ss_pred CCCC
Confidence 4333
No 355
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=3.6 Score=39.99 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 006937 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG----KMDAAAEMIE 392 (625)
Q Consensus 319 A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~ 392 (625)
-+.+...+++.+|++..+|+....++.+.+ ++..=++..+++++.+|.+..+|...-.+..... ...+-+++..
T Consensus 94 eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt 173 (421)
T KOG0529|consen 94 ELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTT 173 (421)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHH
Confidence 333444444444444444444444444333 2344444555555555544444333322222211 1334445555
Q ss_pred HHHHhCCCcHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhcCCCChhhhhh
Q 006937 393 KAIAANPTYAEAYNNLGVLYRD------AGS------ISLAIDAYEQCLKIDPDSRNAGQN 441 (625)
Q Consensus 393 ~al~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~~~~~ 441 (625)
+++..++.+-.+|.....++.. .|+ ...-++.-..|+-.+|++..+|..
T Consensus 174 ~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 174 KLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 5555555555555544444431 221 223345555566666776666554
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.29 E-value=8.5 Score=39.08 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006937 299 YADAMYNLGVAYGEMLKFDMAIVFYELA 326 (625)
Q Consensus 299 ~~~~~~~la~~~~~~~~~~~A~~~~~~a 326 (625)
+...|..||.....+|+++-|.++|+++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3445555555555555555555555543
No 357
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=9.3 Score=37.32 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHHH
Q 006937 349 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG--KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG----SISLAI 422 (625)
Q Consensus 349 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~ 422 (625)
-.++-+.+...+++.+|+.-.+|..+.+++.+.+ ++..-+..++++++.+|.+-.+|...-.+..... ...+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 4577788888999999999999999999998776 4688889999999999988777765554444332 245667
Q ss_pred HHHHHHHhcCCCChhhhhhHHHHhh
Q 006937 423 DAYEQCLKIDPDSRNAGQNRLLAMN 447 (625)
Q Consensus 423 ~~~~~al~~~p~~~~~~~~~~~~~~ 447 (625)
++..+++.-++.|..+|.++.+.+.
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHH
Confidence 8888888889999999888765554
No 358
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.11 E-value=7.6 Score=36.31 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc
Q 006937 221 RPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAV 254 (625)
Q Consensus 221 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~ 254 (625)
.|...+.+...+. -|...++...|...+....+.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4444555554443 356678888888877666654
No 359
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.73 E-value=0.63 Score=44.87 Aligned_cols=92 Identities=21% Similarity=0.176 Sum_probs=74.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC--------CCC-----H-----HHHHhHHHHHHHhcCHHHHHHHHHHHHhcC
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKD--------SGN-----V-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLD 112 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~~-----~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (625)
.+.-|..++++++|..|.--|+.+++.. |.. . .+--.+..||+.+++.+.|+....+.+.++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 3456778899999999998888888752 211 1 233468899999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 113 PQNACAHTHCGILYKDEGRLVEAAESYHKA 142 (625)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (625)
|....-+...|.++..+.+|.+|...+--+
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987765443
No 360
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.54 E-value=3.2 Score=38.72 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=49.9
Q ss_pred HHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (625)
..++..++..+...|+++.++..+++.+..+|-+-..|..+-..|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3456667777778888888888888888888888888888888888888888888888776553
No 361
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.49 E-value=0.48 Score=28.32 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 006937 404 AYNNLGVLYRDAGSISLAIDA--YEQCLKIDPD 434 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 434 (625)
.++.+|..+..+|++++|+.. |+-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 455566666666666666666 3355555554
No 362
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=1.1 Score=41.01 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (625)
Q Consensus 194 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (625)
..++=..+...++++.|..+.++.+..+|+++.-+.-.|.+|.+.|.+.-|++.++..++..|+.+.+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 334445566667777777777777777777776677777777777777777777777777777665443
No 363
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.41 E-value=0.81 Score=34.90 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=36.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 126 YKDEGRLVEAAESYHKALSADPSYKPAA--ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
..+.|++.+|++.+.+.+.......... ......+..++.+....|++++|+..+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567888888888877776543322211 122333555666666666666666666666655
No 364
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.37 E-value=1.7 Score=42.16 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=71.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC
Q 006937 122 CGILYKDEGRLVEAAESYHKALSAD-----------PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~-----------~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~ 190 (625)
-|..++++++|..|..-|..++++. |...+....-..+...+..||...++.+-|+....+.+.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 3556677777777777777776652 22223333334456678888999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 191 APAYYNLGVVYSELMQYDTALGCYEKA 217 (625)
Q Consensus 191 ~~~~~~la~~~~~~~~~~~A~~~~~~a 217 (625)
..-+...|.++..+.+|.+|.+.+.-+
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999998887766544
No 365
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=9 Score=35.29 Aligned_cols=134 Identities=11% Similarity=0.006 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH---HHhhC--CCCHHH
Q 006937 120 THCGILYKDEGRLVEAAESYHKALSADPSY-KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE---ALKID--PHYAPA 193 (625)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~---~l~~~--~~~~~~ 193 (625)
..+++-..+.+++++|+..|.+.+...-.. .......-.....++..|...|++..--+.... +.... |.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 344555566667777777777766542221 111122222355667777777766543333322 22111 111111
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 194 YYNLGVVY-SELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLA 253 (625)
Q Consensus 194 ~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (625)
...+-.-+ .....++.-+..+...++-.... ...-..+..++++.|+|.+|+......+.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 11111111 12233444455444444322111 23445678889999999999988776653
No 366
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=12 Score=36.36 Aligned_cols=201 Identities=17% Similarity=0.057 Sum_probs=122.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCC-----CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC-----------C------C
Q 006937 57 ILRSRNKFVDALALYEIVLEKDSG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----------P------Q 114 (625)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p------~ 114 (625)
.....|-+.+--...-++++.-|. +...++.+...++-.|. ++...+.+.+-.. | .
T Consensus 39 ~~i~kg~~tke~r~I~R~lr~l~~~r~kln~~vL~~~v~~~~~~~s--e~~~~~l~fv~~~~~~~~p~~~~s~~t~~a~~ 116 (493)
T KOG2581|consen 39 AQIDKGVYTKEPRFILRALRLLPSTRRKLNGAVLYKLVSSLLSSGS--EAMDRLLRFVPAFDKNIKPLDTDSPNTQSALK 116 (493)
T ss_pred HHHhccccccchHHHHHHHHhhhhhHhhhhHHHHHHHHHHHcCCch--HHHHHHHhhcccccccCCcccccccccccccc
Confidence 345566555555555566655443 34455555555544443 4444444333210 1 0
Q ss_pred ------cHHHHHHH-H-HHHHHcCCHHHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHH
Q 006937 115 ------NACAHTHC-G-ILYKDEGRLVEAAESYHKALSA-DP-SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (625)
Q Consensus 115 ------~~~~~~~l-a-~~~~~~g~~~~A~~~~~~al~~-~~-~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l 184 (625)
...++..+ + ..+..+.++.+|..+-+..+.. .- +.......-+.+|+.+...+...|+...-...+...+
T Consensus 117 ~k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~l 196 (493)
T KOG2581|consen 117 RKPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALL 196 (493)
T ss_pred cCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 02233322 2 3344568899998887766542 11 1122233346678888888888888766666555544
Q ss_pred hh-----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 185 KI-----DPH-YAPAYYNLGVVYSELMQYDTALGCYEKAAL--E--RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (625)
Q Consensus 185 ~~-----~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (625)
.. +.. .......+-+.|...+.|+.|.....+..- . +...+...+.+|.+..-+++|..|.+++..++..
T Consensus 197 rtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 197 RTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 33 222 244556677889999999999988877641 1 1123566788999999999999999999999999
Q ss_pred CCCcH
Q 006937 255 SPNFE 259 (625)
Q Consensus 255 ~~~~~ 259 (625)
.|.+.
T Consensus 277 apq~~ 281 (493)
T KOG2581|consen 277 APQHA 281 (493)
T ss_pred Ccchh
Confidence 99743
No 367
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=92.11 E-value=5 Score=39.94 Aligned_cols=63 Identities=17% Similarity=0.088 Sum_probs=48.0
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHH--HHHhH--HHHHHHhcCHHHHHHHHHHHHhc
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVE--AHIGK--GICLQMQNMGRLAFDSFSEAVKL 111 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 111 (625)
......+..+++.++|..|.++++.+...-|.+.. .+..+ |.-+...-++++|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677899999999999999999999886344333 34444 44456778899999999988765
No 368
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.08 E-value=21 Score=39.30 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=64.8
Q ss_pred HHHhHHHHHHhCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH-------
Q 006937 160 LTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQY--DTALGCYEKAALERPMYAE------- 226 (625)
Q Consensus 160 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~------- 226 (625)
+..++..|...|+.++|++.+.+..... +.....+-..-..+...+.- +-..++-.-.++.+|....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6678888999999999999999888733 33333444444444444444 4455555555555543210
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHhhHHHHHHH
Q 006937 227 ------AYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTD 271 (625)
Q Consensus 227 ------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~ 271 (625)
.-...-.-+......+-++.+++.++..... ....+..+...|..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 0011122245667778888888888877665 33333344444433
No 369
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.87 E-value=11 Score=35.40 Aligned_cols=146 Identities=12% Similarity=0.021 Sum_probs=86.6
Q ss_pred HhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHH
Q 006937 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (625)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~ 165 (625)
+.+-....+..+..+-++....+++++|+.+.++..++.-- ..-..+|.+.++++++..... ++...
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~-----------yr~sq 254 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI-----------YRQSQ 254 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH-----------HhhHH
Confidence 44445555666777788888899999999988888877532 334667888888887753221 11111
Q ss_pred HHHHhCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q 006937 166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLE 242 (625)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~ 242 (625)
.....|...+|. .+.+.+ .......++.|..++|+..+|++.++...+..|-. ..++-++-..+....-|.
T Consensus 255 q~qh~~~~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 255 QCQHQSPQHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred HHhhhccchhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222221 112221 12334568888999999999999999888777732 234445555555555555
Q ss_pred HHHHHHHH
Q 006937 243 SAIACYER 250 (625)
Q Consensus 243 ~A~~~~~~ 250 (625)
+....+-+
T Consensus 329 DvqavLak 336 (556)
T KOG3807|consen 329 DVQAVLAK 336 (556)
T ss_pred HHHHHHHh
Confidence 44444433
No 370
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.83 E-value=5.3 Score=34.98 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 006937 171 GNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAEAYCNMGVIYKNRGDLESAI 245 (625)
Q Consensus 171 ~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~ 245 (625)
-.-++|...|.++-.. .-++++..+.+|..|. ..+.++++.++.++++..+. +++++..|+.++..+|+++.|-
T Consensus 120 ~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 120 FGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3456777777665433 2246888888888777 67889999999999987543 5899999999999999998874
No 371
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.55 E-value=0.27 Score=26.85 Aligned_cols=23 Identities=17% Similarity=-0.045 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 006937 404 AYNNLGVLYRDAGSISLAIDAYE 426 (625)
Q Consensus 404 ~~~~la~~~~~~g~~~~A~~~~~ 426 (625)
+...+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555555555555555555543
No 372
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.50 E-value=12 Score=35.14 Aligned_cols=59 Identities=12% Similarity=-0.138 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (625)
-.+.-+...+..+..+-++....+++++|+-+.++..++.-- ..-..+|.+.++++++.
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 344555667788888889999999999999999998887643 33466788888888764
No 373
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.50 E-value=1.1 Score=41.72 Aligned_cols=65 Identities=14% Similarity=0.017 Sum_probs=59.6
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (625)
....+..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|+++-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34566778999999999999999999999999999999999999999999999999999987664
No 374
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=15 Score=35.78 Aligned_cols=141 Identities=12% Similarity=0.035 Sum_probs=99.4
Q ss_pred chHhHHH--HHHHHHhCCCHHHHHHHHHHHHHcC----CC-----CHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcC---
Q 006937 47 EGKDALS--YANILRSRNKFVDALALYEIVLEKD----SG-----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--- 112 (625)
Q Consensus 47 ~~~~~~~--~a~~~~~~g~~~~A~~~~~~~l~~~----p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 112 (625)
+.+.++. ....+..+++|++|.++-+..+..- -. .+..|+.+..++...|+...-...+...+...
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 3455444 3445566799999999888776531 11 23567788888888888777666666555431
Q ss_pred --C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC
Q 006937 113 --P-QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (625)
Q Consensus 113 --p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~ 189 (625)
. ........+-+.|...+.|++|.....+.. .|+.... ...++.++.+|.+..-+++|..|.+++-+++...|.
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~sn-ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASN-NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--Ccccccc-HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 1 123455666788888999999988887764 2332222 245777889999999999999999999999999997
Q ss_pred C
Q 006937 190 Y 190 (625)
Q Consensus 190 ~ 190 (625)
+
T Consensus 280 ~ 280 (493)
T KOG2581|consen 280 H 280 (493)
T ss_pred h
Confidence 4
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.27 E-value=1.9 Score=30.99 Aligned_cols=61 Identities=18% Similarity=0.088 Sum_probs=47.1
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhc
Q 006937 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC---GILYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~ 145 (625)
....|.-++..++.++|+..++++++..++.+.-+..+ ..+|...|++.+.+.+..+-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667889999999999999999988776655544 46788899999988876655443
No 376
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.25 E-value=18 Score=36.48 Aligned_cols=202 Identities=13% Similarity=0.047 Sum_probs=121.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHH
Q 006937 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 192 (625)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 192 (625)
|-+...+..+-.++...-.+.-....+.+.+....+ ..+ +..++.+|... ..++-...+++..+.+-++..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-kma-------l~el~q~y~en-~n~~l~~lWer~ve~dfnDvv 133 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-KMA-------LLELLQCYKEN-GNEQLYSLWERLVEYDFNDVV 133 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcch-HHH-------HHHHHHHHHhc-CchhhHHHHHHHHHhcchhHH
Confidence 334444555555555555566666777777776544 333 66777777776 667778888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHH
Q 006937 193 AYYNLGVVYSELMQYDTALGCYEKAALER-PM--Y---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (625)
Q Consensus 193 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~--~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 266 (625)
.-..|+..|.+ ++.+.+..+|.+++... |. + .++|..+-. .--.+.+.-+....+.-...... ...
T Consensus 134 ~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~-----~~~ 205 (711)
T COG1747 134 IGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEG-----RGS 205 (711)
T ss_pred HHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccc-----hHH
Confidence 77888887777 88889999999887542 21 1 122222211 11223333333333322221111 112
Q ss_pred HHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHH
Q 006937 267 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE--------------------MLKFDMAIVFYELA 326 (625)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~a 326 (625)
.++..+-..|....++.+|++.+...++.+..+..+.-.+...+.. -.++-+++.-|++.
T Consensus 206 Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~ 285 (711)
T COG1747 206 VLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKL 285 (711)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHH
Confidence 2233344556667899999999999998888877766665555444 34566666666666
Q ss_pred HhhCC
Q 006937 327 FHFNP 331 (625)
Q Consensus 327 l~~~~ 331 (625)
+..+.
T Consensus 286 m~f~e 290 (711)
T COG1747 286 MHFDE 290 (711)
T ss_pred heecc
Confidence 65543
No 377
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.14 E-value=2.1 Score=32.57 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
+..++|.++...|++++|+..+++++++
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444444555555555555555555444
No 378
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.86 E-value=2 Score=39.42 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=30.0
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 006937 343 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 343 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
.+...++++.|..+.++.+.++|+++.-+...|.+|.++|.+.-|++.++..++..|+.+.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3444444555555555555555555444444555555555555555555554444444443
No 379
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=90.60 E-value=14 Score=33.99 Aligned_cols=63 Identities=10% Similarity=0.169 Sum_probs=43.5
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CHHHHHhHHHHHH-HhcCHHHHHHHHHHHHhc
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQ-MQNMGRLAFDSFSEAVKL 111 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 111 (625)
+.++.+|..+.+.|+|++.+.++++++..+|. +.+-...++.+|- ..|....+...+......
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 45788999999999999999999999998775 3455555555553 335555566555554443
No 380
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.59 E-value=0.95 Score=27.08 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=10.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALAL 70 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~ 70 (625)
.++.+|-.+..+|+|++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
No 381
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.45 E-value=0.43 Score=26.04 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIE 392 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~ 392 (625)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555555443
No 382
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.33 E-value=4.5 Score=35.40 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHH
Q 006937 367 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----YAEAYNNLGVLYRDAGSISLAI 422 (625)
Q Consensus 367 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 422 (625)
+++..+.+|..|. ..+.++|+..+-+++++.+. +++++..|+.++..+|+++.|.
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3555555555444 34555566666666555322 2556666666666666666553
No 383
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.17 E-value=17 Score=39.96 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHH-----HHhHHHHHHHhcCHHHHHHHHHHHH
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEA-----HIGKGICLQMQNMGRLAFDSFSEAV 109 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~la~~~~~~g~~~~A~~~~~~al 109 (625)
+-..-..++...+|++|+.+.+-....+|..... ....|.-++.+|++++|+..|.+..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 5566777888888999999887766555543221 1112666889999999999998753
No 384
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.82 E-value=58 Score=41.49 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 412 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 412 (625)
++.+...|..+.+.|+.++|-+.|..|++++...+.+|...|...
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~ 2856 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYL 2856 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445666777777777777777777777777766666666666543
No 385
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.36 E-value=34 Score=36.78 Aligned_cols=378 Identities=13% Similarity=0.013 Sum_probs=207.0
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHH---HhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQ---MQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
....+.+...+...|++++-...-.++.+..|..+..|.....-.. ..++..++...|++++.-. +++..|...+.
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw~e~~~ 191 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIWEEVVN 191 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHHHHHHH
Confidence 3455667778888999888887777777888888887776554433 3367788889999998643 34444444443
Q ss_pred H-------HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHH----
Q 006937 125 L-------YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA---- 193 (625)
Q Consensus 125 ~-------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---- 193 (625)
. +...++++.-...|.+++..-.....--..+...+...-..+...-..++-+.++...+... .+..+
T Consensus 192 y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~ 270 (881)
T KOG0128|consen 192 YLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWD 270 (881)
T ss_pred HHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHH
Confidence 3 34557788889999999876443332222233445555555655555677777777776654 22111
Q ss_pred HHHHH---HHHHHcCCHHHHHHHHH-------HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHh
Q 006937 194 YYNLG---VVYSELMQYDTALGCYE-------KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (625)
Q Consensus 194 ~~~la---~~~~~~~~~~~A~~~~~-------~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 263 (625)
+.... .......+++.|..-+. +.++..+.....|..+.......|+.-.-...+++++...+.+...|.
T Consensus 271 ~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi 350 (881)
T KOG0128|consen 271 LSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWI 350 (881)
T ss_pred HHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHh
Confidence 11111 11123344555554433 333444444455666666677778877777777777776666655554
Q ss_pred hHHHHHHH---hchh----hh-hcCCHHHHHHHHHHHH---hhCCCC-----------HHH---HHHHHHHH-HhcC---
Q 006937 264 NMAIALTD---LGTK----VK-LEGDINQGVAYYKKAL---YYNWHY-----------ADA---MYNLGVAY-GEML--- 314 (625)
Q Consensus 264 ~~~~~~~~---l~~~----~~-~~~~~~~A~~~~~~~l---~~~~~~-----------~~~---~~~la~~~-~~~~--- 314 (625)
..+..+-. ++.. +. ..+...-...++++++ +.+... ... +++....+ ...+
T Consensus 351 ~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~ 430 (881)
T KOG0128|consen 351 GYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNII 430 (881)
T ss_pred hhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44332210 0000 00 0000011111111111 111100 000 11111111 1111
Q ss_pred ----------CHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHc
Q 006937 315 ----------KFDMAIVFYELAFHF-NPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQ 381 (625)
Q Consensus 315 ----------~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~ 381 (625)
.+..|...|...... -......+...|.++.. +++.+.+.......+........ .|.....+-...
T Consensus 431 ~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~ 510 (881)
T KOG0128|consen 431 DSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREY 510 (881)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHh
Confidence 233444444433333 11224445555655543 56888888888887776655555 788888888888
Q ss_pred CCHHHHHHHHHHHHHh--CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 382 GKMDAAAEMIEKAIAA--NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 382 g~~~~A~~~~~~al~~--~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
|+...+..++++++.. +|++ ..++..+-......|.++.....-.+
T Consensus 511 g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 511 GDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred CCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 9999999988888765 3332 34555555556666777666554443
No 386
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.36 E-value=0.65 Score=28.13 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 403 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 403 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
+++..||.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35566677777777777777777777664
No 387
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.17 E-value=0.85 Score=27.63 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 369 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 369 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
+++..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35666777777777777777777777664
No 388
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.14 E-value=19 Score=33.61 Aligned_cols=27 Identities=7% Similarity=-0.181 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006937 298 HYADAMYNLGVAYGEMLKFDMAIVFYE 324 (625)
Q Consensus 298 ~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (625)
.+++.+..+|..+.+.|++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 367788888888888888888877663
No 389
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.95 E-value=19 Score=33.35 Aligned_cols=28 Identities=0% Similarity=0.105 Sum_probs=21.1
Q ss_pred HHHHhHHHHHHhCChHHHHHHHHHHHhh
Q 006937 159 VLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (625)
Q Consensus 159 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~ 186 (625)
+-+.+..+++..|+..+|+..+++-+..
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~ 39 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDR 39 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3556677788888899998888776654
No 390
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=88.83 E-value=23 Score=35.85 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=15.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Q 006937 409 GVLYRDAGSISLAIDAYEQCLKIDP 433 (625)
Q Consensus 409 a~~~~~~g~~~~A~~~~~~al~~~p 433 (625)
|.-|.+.|+...|..+|.+++....
T Consensus 377 g~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 377 GHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 4556666666666666666666544
No 391
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.80 E-value=1.6 Score=36.04 Aligned_cols=52 Identities=19% Similarity=0.111 Sum_probs=41.9
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG 98 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 98 (625)
..+.++..|+..+..|+|.-|..+.+.++..+|++..+...++.++..+|.-
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 5677888899999999999999999999999999999888888888777643
No 392
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=88.62 E-value=20 Score=36.39 Aligned_cols=54 Identities=17% Similarity=-0.059 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 006937 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (625)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (625)
....+|..++..++|+-|...|+.+.+-..+ ..++..++-++...|.+....+.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~-Dkaw~~~A~~~Em~alsl~~~~~ 263 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN-DKAWKYLAGAQEMAALSLLMQGQ 263 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh-chhHHHHHhHHHHHHHHHHhcCC
Confidence 4567899999999999999999988775443 45566666667666666666553
No 393
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.54 E-value=39 Score=36.32 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=22.4
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEI 73 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 73 (625)
.+..........+++.|.+++|.++.+.
T Consensus 109 ~~~~p~Wa~Iyy~LR~G~~~~A~~~~~~ 136 (613)
T PF04097_consen 109 VNGDPIWALIYYCLRCGDYDEALEVANE 136 (613)
T ss_dssp ETTEEHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CCCCccHHHHHHHHhcCCHHHHHHHHHH
Confidence 3566678889999999999999999843
No 394
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.01 E-value=52 Score=37.15 Aligned_cols=22 Identities=9% Similarity=-0.080 Sum_probs=10.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 006937 339 NLGVIYKDRDNLDKAVECYQMA 360 (625)
Q Consensus 339 ~la~~~~~~~~~~~A~~~~~~a 360 (625)
.|+.-+..++++-+|-+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHH
Confidence 3444444455555554444443
No 395
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.85 E-value=53 Score=37.08 Aligned_cols=110 Identities=17% Similarity=0.096 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH---HHHHHHH
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL---NNLGVVY 378 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~la~~~ 378 (625)
.+...|..+...+.+++|.-.|+.+=++ -.--.+|...|++.+|+....+. .+...+.. ..|+.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSLAAQL---SEGKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHHHHH
Confidence 4444555556666666665555443110 00112223335555555444332 23322332 6677778
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 379 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (625)
Q Consensus 379 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (625)
..++++-+|-+.+...+. +|..+ -.+|.+...+++|+.....+-
T Consensus 1010 ~e~~kh~eAa~il~e~~s-d~~~a------v~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLS-DPEEA------VALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHcccchhHHHHHHHHhc-CHHHH------HHHHhhHhHHHHHHHHHHhcc
Confidence 888888888888777654 22212 223444456677766555443
No 396
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=87.83 E-value=9.9 Score=34.89 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006937 195 YNLGVVYSELMQYDTALGCYEKAALERPM 223 (625)
Q Consensus 195 ~~la~~~~~~~~~~~A~~~~~~al~~~~~ 223 (625)
..+|.+..+.|+|++.+.++++++..++.
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 44555555555566666555555555443
No 397
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.25 E-value=46 Score=35.81 Aligned_cols=158 Identities=18% Similarity=0.073 Sum_probs=61.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH
Q 006937 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (625)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~ 167 (625)
.-.++...|+|+.|++++-+ .+.+..--..+|.++...|-+.-.-..-...+...+.++.. ..++.+...... .
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~-~ 337 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTR-S 337 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHH-T
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHH-H
Confidence 44567778999999998876 22222212233334444443333322225555555554332 344444444444 4
Q ss_pred HHhCChHHHHHHHHHHHhhC-CCCH-HHHHHHHHHHHHcCCHHHHH--------------HHHHHHHHhCCCC---HHHH
Q 006937 168 KLAGNTQDGIQKYYEALKID-PHYA-PAYYNLGVVYSELMQYDTAL--------------GCYEKAALERPMY---AEAY 228 (625)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~-~~~~-~~~~~la~~~~~~~~~~~A~--------------~~~~~al~~~~~~---~~~~ 228 (625)
+...+..+|+++|--+-... |... ..+..+..+....++++.-+ +-..+.+...... -.+.
T Consensus 338 F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~ 417 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREII 417 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHH
Confidence 45678888888775443322 2211 12233333334443332221 1111122222211 2344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 006937 229 CNMGVIYKNRGDLESAIACYERC 251 (625)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~a 251 (625)
...|.-....|++++|+.+|.-+
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 45566666777777777776543
No 398
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=87.14 E-value=16 Score=30.25 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=25.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (625)
Q Consensus 202 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (625)
...+.....+.+++.++..++.++..+..+..+|.+. +..+.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3445566666666666666555556666666666543 2333444443
No 399
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.85 E-value=3.1 Score=38.40 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 429 (625)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 429 (625)
+...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.|...|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456667777888888888888888888777888888888888888777777776654
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.69 E-value=3.1 Score=38.39 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=48.3
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (625)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (625)
.+...+..|...|.+.+|+++.++++.++|-+...+..+-.++...|+--.+...|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445567778888888888888888888888888888888888888887777777776543
No 401
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.03 E-value=2.6 Score=40.00 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 006937 319 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (625)
Q Consensus 319 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (625)
|+.+|.+|..+.|++...++.+|.++...|+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888887665567777888777776
No 402
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.76 E-value=3.3 Score=39.33 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 006937 285 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346 (625)
Q Consensus 285 A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 346 (625)
|..+|.+|..+.|.....++.+|.++...|+.-.|+-+|-+++......+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997766668888888888777
No 403
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.68 E-value=21 Score=33.13 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQMA 360 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (625)
....+|..|+..|++++|+++|+.+...... ...++..+..++...|+.+..+.+.-+.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445666666666666666666666443221 1345556666666677766666554443
No 404
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.21 E-value=22 Score=38.27 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=31.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 199 VVYSELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (625)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (625)
.++.+..-|+-|+.+.+.-- .++ ....+....|..++..|++++|...|-+.+..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34455555666665544321 111 12345666677777777777777777777654
No 405
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.18 E-value=36 Score=32.47 Aligned_cols=159 Identities=11% Similarity=0.065 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC--------------------------HHHHHHHHHHHHhhCC-C
Q 006937 280 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--------------------------FDMAIVFYELAFHFNP-H 332 (625)
Q Consensus 280 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~--------------------------~~~A~~~~~~al~~~~-~ 332 (625)
+--++|+.+-+-...+.|..++++-.++.+.++..+ .+++...+.+++.... .
T Consensus 210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pG 289 (415)
T COG4941 210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPG 289 (415)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 345788888888888999999988887777654321 4567777777776543 3
Q ss_pred CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH
Q 006937 333 CAEACNNLGVIYKD-----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAY 405 (625)
Q Consensus 333 ~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 405 (625)
-....-.++.++.. .-++..-..+|.-...+.|+ +.+-.|.+.+..+..-.+.++...+..... -..+.-.+
T Consensus 290 PYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h 368 (415)
T COG4941 290 PYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYH 368 (415)
T ss_pred hHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccH
Confidence 22333333333332 23555555666665555554 455566666666666677777777666554 22334566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhh
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 439 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 439 (625)
...|.++.++|+.++|...|++++.+.++..+..
T Consensus 369 ~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 369 AARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 7789999999999999999999999998866543
No 406
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.31 E-value=7.7 Score=34.29 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=51.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcH
Q 006937 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (625)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (625)
...+++.+...+|+...+.-++.+|.+......+-..+.-.|+|++|...++-+-.+.|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 45677888888888888888888888888888888888888888888888888888888653
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.72 E-value=2.6 Score=26.55 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 006937 52 LSYANILRSRNKFVDALALYEIVLE 76 (625)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (625)
+.+|..|...|+++.|..++++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677777777777777777777774
No 408
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.59 E-value=19 Score=37.14 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=76.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006937 309 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 388 (625)
Q Consensus 309 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 388 (625)
+..+.|+++.|.++..++ ++..-|..||.+....+++..|.++|.++.... .|-.++...|+-+--.
T Consensus 646 lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLG--------SLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchh--------hhhhhhhhcCChhHHH
Confidence 446778888887765554 556778889999999999999999988876542 2222233334433222
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHHHHHHHHH
Q 006937 389 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 468 (625)
Q Consensus 389 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (625)
..-..+-+....+ .--.+|...|+++++++.+...-++ |+ ..+++..|+. .+.-+....|...+
T Consensus 713 ~la~~~~~~g~~N-----~AF~~~~l~g~~~~C~~lLi~t~r~-pe------Aal~ArtYlp----s~vs~iv~~wk~~l 776 (794)
T KOG0276|consen 713 VLASLAKKQGKNN-----LAFLAYFLSGDYEECLELLISTQRL-PE------AALFARTYLP----SQVSRIVELWKEDL 776 (794)
T ss_pred HHHHHHHhhcccc-----hHHHHHHHcCCHHHHHHHHHhcCcC-cH------HHHHHhhhCh----HHHHHHHHHHHHHh
Confidence 2222221111111 1124677889999888877654322 22 2245666654 34445566677665
Q ss_pred hh
Q 006937 469 MR 470 (625)
Q Consensus 469 ~~ 470 (625)
..
T Consensus 777 ~k 778 (794)
T KOG0276|consen 777 SK 778 (794)
T ss_pred hh
Confidence 43
No 409
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.54 E-value=3.1 Score=26.25 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=13.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQCL 429 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al 429 (625)
+.||..|..+|+.+.|.+.++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555555
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.42 E-value=44 Score=33.32 Aligned_cols=64 Identities=17% Similarity=-0.000 Sum_probs=40.6
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 006937 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA--PAYYNL--GVVYSELMQYDTALGCYEKAALE 220 (625)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~l--a~~~~~~~~~~~A~~~~~~al~~ 220 (625)
+......+...+..++|..|.+.+..+...-|... ..+..+ |..++..-++++|.+.+++.+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445566667778888888888888777523322 233333 34445677778888888877654
No 411
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.22 E-value=14 Score=36.66 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 368 SQSLNNLGVVYTVQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 368 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 396 (625)
...++.+|-+|+.+++|.+|++.|...+-
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777666653
No 412
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.60 E-value=29 Score=35.85 Aligned_cols=153 Identities=18% Similarity=0.068 Sum_probs=84.5
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006937 57 ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (625)
Q Consensus 57 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (625)
.+.-.|+++.|...+-.+ | .+.....+..+..+|..++|++ +.++.. ..-.+..+.|+++.|.
T Consensus 595 t~vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL~-------~s~D~d----~rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQALE-------LSTDPD----QRFELALKLGRLDIAF 657 (794)
T ss_pred HHhhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhhh-------cCCChh----hhhhhhhhcCcHHHHH
Confidence 556677777777654433 2 2344455666666776665543 333321 1223456778888887
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (625)
Q Consensus 137 ~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 216 (625)
++..++- +..- |..||......+++..|.+++.++... -.|-.++...|+-+--...-..
T Consensus 658 ~la~e~~-----s~~K-------w~~Lg~~al~~~~l~lA~EC~~~a~d~--------~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 658 DLAVEAN-----SEVK-------WRQLGDAALSAGELPLASECFLRARDL--------GSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred HHHHhhc-----chHH-------HHHHHHHHhhcccchhHHHHHHhhcch--------hhhhhhhhhcCChhHHHHHHHH
Confidence 7665542 2222 677788888888888888888876543 2223334444444433333333
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (625)
Q Consensus 217 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (625)
+-+....+.. -.++...|+++++++.+.+.
T Consensus 718 ~~~~g~~N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKNNLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhcccchH-----HHHHHHcCCHHHHHHHHHhc
Confidence 3222222211 13456677777777776654
No 413
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=81.91 E-value=2.6 Score=40.05 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhh
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 440 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 440 (625)
...+++.+-++.+.+..|+.....++..++....+++..+..+....++++|++.++.+....|++.....
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~ 347 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEE 347 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHH
Confidence 44446666666666666666666666666666666666666666666677777777776666666655443
No 414
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=81.81 E-value=51 Score=32.92 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-------h-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAF-------H-FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al-------~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (625)
+...+.+++..+|+|..|++.++..- . ..+-....++.+|-+|+.+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888888877765431 1 1223456778889999999999999998888764
No 415
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=81.68 E-value=3.7 Score=23.31 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHhHH
Q 006937 63 KFVDALALYEIVLEKDSGNVEAHIGKG 89 (625)
Q Consensus 63 ~~~~A~~~~~~~l~~~p~~~~~~~~la 89 (625)
+.+.|..+|++++...|.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555554443
No 416
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=81.30 E-value=4.3 Score=42.47 Aligned_cols=96 Identities=13% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH--hhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH--HccCC-CCHHHHHHH
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAF--HFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMA--LSIKP-NFSQSLNNL 374 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al--~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a--l~~~~-~~~~~~~~l 374 (625)
.....-+..+...|++..|...+.+.- .+.+. ........|.+....|++++|+..+... ..+.+ .....+...
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~ 104 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLR 104 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHH
Confidence 345555677777788888887777665 22222 2445566677777888888888877641 11111 123355667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 006937 375 GVVYTVQGKMDAAAEMIEKAIA 396 (625)
Q Consensus 375 a~~~~~~g~~~~A~~~~~~al~ 396 (625)
+.++...|++-+|...+-..-.
T Consensus 105 A~a~~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 105 AQAYEQQGDPLAAARERIALDP 126 (536)
T ss_dssp ----------------------
T ss_pred HHHHHhcCCHHHHHHHHHHHhh
Confidence 7778888877777765554433
No 417
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.46 E-value=92 Score=33.84 Aligned_cols=63 Identities=24% Similarity=0.178 Sum_probs=46.7
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-HHHHHhHHHHHHHhcCHHHHHHHHHHHHhc
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (625)
...+-..-.++.++.-|+-|+.+.+.- ..+++. .+.+...|.-++..|++++|...|-+.+..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 344555677788888899998886653 233332 357778899999999999999999888764
No 418
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=79.93 E-value=58 Score=31.16 Aligned_cols=162 Identities=15% Similarity=0.037 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--------------------------CHHHHHHHHHHHHhcCC-CCH
Q 006937 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG--------------------------RLVEAAESYHKALSADP-SYK 150 (625)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------------------------~~~~A~~~~~~al~~~~-~~~ 150 (625)
-++|+..-.-...+-|..++++-.++.+.+... -.+++...+.+++.... .-.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 467888777788888988888777776655422 25667777777766543 211
Q ss_pred HHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Q 006937 151 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--RPMYAEAY 228 (625)
Q Consensus 151 ~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~ 228 (625)
...-.++.++. .+ .....-+|..-..+|.-.....|+ +.+-.|.+....+..-.+.++...+..... -..+...+
T Consensus 292 qlqAAIaa~HA-~a-~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h 368 (415)
T COG4941 292 QLQAAIAALHA-RA-RRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYH 368 (415)
T ss_pred HHHHHHHHHHH-hh-cccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccH
Confidence 11111111111 00 112234566666666666666555 555666777777777777888877776654 22344566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (625)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 262 (625)
...|.++.+.|+.++|...|++++.+.++..+..
T Consensus 369 ~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 369 AARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 7789999999999999999999999988765543
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.70 E-value=5.4 Score=22.59 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhCCCcHHHH
Q 006937 385 DAAAEMIEKAIAANPTYAEAY 405 (625)
Q Consensus 385 ~~A~~~~~~al~~~p~~~~~~ 405 (625)
+.|...|++++...|.++..|
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W 24 (33)
T smart00386 4 ERARKIYERALEKFPKSVELW 24 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHH
Confidence 333334444443333333333
No 420
>PF12854 PPR_1: PPR repeat
Probab=79.47 E-value=5.8 Score=23.26 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQ 358 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~ 358 (625)
...|..+...+.+.|+.++|.+.|+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444445555555555554444
No 421
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=77.84 E-value=58 Score=30.00 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 006937 195 YNLGVVYSELMQYDTALGCYEKAALE-RP--MYAEAYCNMGVIYKN-RGDLESAIACYER 250 (625)
Q Consensus 195 ~~la~~~~~~~~~~~A~~~~~~al~~-~~--~~~~~~~~la~~~~~-~g~~~~A~~~~~~ 250 (625)
..+|.+..+.++|++.+.+.+++++. +| -+.+-...+..+|.. .|....+...+..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 34555555666666666666665554 22 233444444444432 3444444444443
No 422
>PF12854 PPR_1: PPR repeat
Probab=77.52 E-value=7.2 Score=22.85 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006937 402 AEAYNNLGVLYRDAGSISLAIDAYEQ 427 (625)
Q Consensus 402 ~~~~~~la~~~~~~g~~~~A~~~~~~ 427 (625)
...|..+-..|.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44555566666666666666666553
No 423
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=77.21 E-value=5.5 Score=37.95 Aligned_cols=83 Identities=17% Similarity=0.073 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 413 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 413 (625)
.....+++.+-.+.+.+..|+..-..++..+++...+++..+..+....++++|++.++.+....|++..+...+..+-.
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 34455577777788888888877777777777778888888888888888888888888888888887776665555444
Q ss_pred HcC
Q 006937 414 DAG 416 (625)
Q Consensus 414 ~~g 416 (625)
...
T Consensus 355 ~~~ 357 (372)
T KOG0546|consen 355 KKK 357 (372)
T ss_pred HHH
Confidence 433
No 424
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.86 E-value=55 Score=29.25 Aligned_cols=63 Identities=19% Similarity=0.056 Sum_probs=57.0
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 006937 90 ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (625)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 152 (625)
..+.+.+...+|+...+.-++..|.+......+-.++.-.|++++|...++-+-++.|++...
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 456778899999999999999999999999999999999999999999999999999986553
No 425
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=76.64 E-value=41 Score=27.70 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=33.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHH
Q 006937 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106 (625)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (625)
..+...+.....+.+++.++..++.++..+..+...|... +..+.+..++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3444567788888888888887776777777777777654 3445555554
No 426
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=75.63 E-value=88 Score=30.97 Aligned_cols=57 Identities=19% Similarity=0.056 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----HHHHHhHHHH--HHHhcCHHHHHHHHHH
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSGN-----VEAHIGKGIC--LQMQNMGRLAFDSFSE 107 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~--~~~~g~~~~A~~~~~~ 107 (625)
...++..+++.++|..|...|++++...+.. ...+..++.+ +...-++++|.+.+++
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3446779999999999999999999875421 2334444444 4567788999998885
No 427
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=74.80 E-value=55 Score=28.25 Aligned_cols=137 Identities=17% Similarity=0.190 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----
Q 006937 279 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYG-----EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD----- 348 (625)
Q Consensus 279 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-----~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~----- 348 (625)
+.++++|..+|+.-...+. .+..-+.+|..++ ..++...|++.+..+-. .+.+.+...+|.++....
T Consensus 48 ~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 3566777776665543332 3444445554433 23467778888877765 445667777777665422
Q ss_pred --CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 349 --NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNNLGVLYRDAGSISLAIDA 424 (625)
Q Consensus 349 --~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~ 424 (625)
+.++|++++.++-.+. +..+.+.|...+..-. ++ +....|. .+. ..+..+.-..+.+.|.++
T Consensus 125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~---~~~~~~~~~kDMdka~qf 190 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKPL---DRAELGSLSKDMDKALQF 190 (248)
T ss_pred CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCCc---chhhhhhhhHhHHHHHHH
Confidence 3678888888887663 4455555555554321 11 1111231 111 123334445677778888
Q ss_pred HHHHHhcC
Q 006937 425 YEQCLKID 432 (625)
Q Consensus 425 ~~~al~~~ 432 (625)
--+|.+++
T Consensus 191 a~kACel~ 198 (248)
T KOG4014|consen 191 AIKACELD 198 (248)
T ss_pred HHHHHhcC
Confidence 88887764
No 428
>PF13041 PPR_2: PPR repeat family
Probab=74.68 E-value=19 Score=23.21 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFH 328 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~ 328 (625)
.|..+-..+.+.|++++|.++|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444444445555555555544443
No 429
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=74.27 E-value=72 Score=29.38 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc-CC--CCHHHHHhHHHHHHH-hcCHHHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEK-DS--GNVEAHIGKGICLQM-QNMGRLAFDSFSEA 108 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p--~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 108 (625)
.++.+|...-+.++|++.+...+++++. +| -+.+-...+..+|-. .|....+...+...
T Consensus 3 ~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~si 65 (244)
T smart00101 3 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSI 65 (244)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHH
Confidence 4677899999999999999999999886 44 455666677776643 46777777777653
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=73.97 E-value=84 Score=29.98 Aligned_cols=29 Identities=21% Similarity=0.102 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 116 ACAHTHCGILYKDEGRLVEAAESYHKALS 144 (625)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (625)
.+++...|..|.+.|+-+.|.+.+.+..+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34555555555555655555555554443
No 431
>PF13041 PPR_2: PPR repeat family
Probab=72.87 E-value=22 Score=22.87 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 193 AYYNLGVVYSELMQYDTALGCYEKAAL 219 (625)
Q Consensus 193 ~~~~la~~~~~~~~~~~A~~~~~~al~ 219 (625)
.|..+-..+.+.|++++|.++|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444445555555555555555555544
No 432
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=72.30 E-value=31 Score=27.99 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 347 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 395 (625)
Q Consensus 347 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 395 (625)
+|+-++-.+.+....+....++..+..+|.+|.+.|+..+|-+.+.+|.
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3333333344444333333344444444444444444444444444443
No 433
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=71.59 E-value=16 Score=30.28 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006937 371 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 417 (625)
Q Consensus 371 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 417 (625)
....+.-.+..|++.-|.++.+.++..+|++.++...++.+|..+|.
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 33444445556666666666666666666666666666666655543
No 434
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=71.48 E-value=32 Score=27.88 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=40.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 377 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 377 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 431 (625)
.+..+|+-++-.+.+....+....+++.+..+|.+|.+.|+..+|.+.+++|-+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3556777777777777777666677999999999999999999999999998764
No 435
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=71.25 E-value=68 Score=27.73 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHh
Q 006937 190 YAPAYYNLGVVYSE-LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-----RGDLESAIACYERCLA 253 (625)
Q Consensus 190 ~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~ 253 (625)
.++.-..|+..+.- +.++++|...|..--..+. .+...+.+|..+.. .++...|+..+..+-.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~ 101 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD 101 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc
Confidence 44555555554432 3445555555544333221 23444444443332 2344455555554443
No 436
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.19 E-value=17 Score=32.25 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006937 384 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 433 (625)
Q Consensus 384 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 433 (625)
.+..++..++.++..|+ +..+.+++.++...|+.++|.+..+++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34445556666666675 77888888888888888888888888888888
No 437
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=70.47 E-value=24 Score=25.40 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=19.6
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLE 76 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (625)
+..+...|..+-+.|++++|+.+|+++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44566677777777777777777665543
No 438
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.87 E-value=83 Score=29.30 Aligned_cols=159 Identities=9% Similarity=-0.009 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHH
Q 006937 284 QGVAYYKKALYYNWHYADAMYNLGVAYGE--------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR--DNLDKA 353 (625)
Q Consensus 284 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--~~~~~A 353 (625)
.|++.-...+..+|..-.+|...-.+... ..-.+.-+..+..+++-+|.+..+|...-.++..- .++..-
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence 34444444455555544444433333322 11245566778888899999999988887777665 567788
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhCCCcHHHHHHH---HHHHHHcCC------H
Q 006937 354 VECYQMALSIKPNFSQSLNNLGVVY------TVQGKMDAAAEMIEKAIAANPTYAEAYNNL---GVLYRDAGS------I 418 (625)
Q Consensus 354 ~~~~~~al~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~------~ 418 (625)
+...++.++.++.+.-.|...-.+. .....+..-.++-..++..++.+..+|... -......|+ +
T Consensus 130 l~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l 209 (328)
T COG5536 130 LFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYL 209 (328)
T ss_pred HHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHH
Confidence 8888999999998876665444444 333344455666677788888888888766 333333444 4
Q ss_pred HHHHHHHHHHHhcCCCChhhhhhH
Q 006937 419 SLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 419 ~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
++-+++...++-.+|++..++.-.
T Consensus 210 ~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 210 EKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred HHHHHHHHhhhhcCccccchhhHH
Confidence 556677777888899998887653
No 439
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.81 E-value=1.1e+02 Score=29.46 Aligned_cols=192 Identities=14% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHH
Q 006937 210 ALGCYEKAALERPMYAEAYC---NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 286 (625)
Q Consensus 210 A~~~~~~al~~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 286 (625)
+...|++..+.-|+.....+ .-|.++...++|.+....+..+-.......+....-...-...|......+-.+---
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---
Q 006937 287 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI--- 363 (625)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 363 (625)
..|+..+ ..+.+|.-|+..++++.|.--|.++.. +-+.|.+++.+.++.
T Consensus 120 ~~YE~~~--------~n~YkaLNYm~~nD~~~ArVEfnRan~--------------------rQ~~AKe~~~~ei~ka~~ 171 (449)
T COG3014 120 NIYEGVL--------INYYKALNYMLLNDSAKARVEFNRANE--------------------RQRRAKEFYYEEVQKAIK 171 (449)
T ss_pred hhHHHHH--------HHHHHHhhHHHhcchhhhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHH
Q ss_pred -------CCCCHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006937 364 -------KPNFSQ-----------SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 425 (625)
Q Consensus 364 -------~~~~~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 425 (625)
+|+... .|.++...|...+++-.+...|..++-..|+. +..-..+.+-...|-+.+-...+
T Consensus 172 e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~-dv~kg~~~~~e~~gi~qd~~~~~ 250 (449)
T COG3014 172 EIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGLFYALNG-DVNKGLGYLNEAYGISQDQSPFV 250 (449)
T ss_pred HHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCc-cHhHHHHHHHHHhccCchhhHHH
Q ss_pred HHHHh
Q 006937 426 EQCLK 430 (625)
Q Consensus 426 ~~al~ 430 (625)
.+...
T Consensus 251 ~qY~~ 255 (449)
T COG3014 251 AQYLV 255 (449)
T ss_pred HHhcc
No 440
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.36 E-value=99 Score=28.88 Aligned_cols=131 Identities=17% Similarity=0.061 Sum_probs=78.8
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------HHHHHh---H-HHHHHHhcCHHHHHHHHHHHHhcCCC
Q 006937 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN----------VEAHIG---K-GICLQMQNMGRLAFDSFSEAVKLDPQ 114 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----------~~~~~~---l-a~~~~~~g~~~~A~~~~~~al~~~p~ 114 (625)
.-+-.-|+.+.-..+|..|++.+++.++.-..+ .+.... . ..++..++++.+++...-+-.+.-.+
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 344456788889999999999999998753111 122211 2 24567889999988877766654333
Q ss_pred c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHH
Q 006937 115 N-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180 (625)
Q Consensus 115 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~ 180 (625)
- +.++-.-...|.+.+++....+.-...+.. |+|......-+.+-..+-.++.=.|.+++|.+..
T Consensus 116 lPpkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 116 LPPKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 2 345555556777888888888877777763 4443322111111222334444556666666654
No 441
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.63 E-value=48 Score=35.30 Aligned_cols=196 Identities=15% Similarity=0.181 Sum_probs=102.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHH---HHhCChHHHHHHHHHHHhhC-CCC
Q 006937 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL---KLAGNTQDGIQKYYEALKID-PHY 190 (625)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~---~~~~~~~~A~~~~~~~l~~~-~~~ 190 (625)
.++.-..+-..|....+|+.-++..+..-. -|+....... ..+.+..+-++ .+-|+-++|+...-.+++.. |-.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~-~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVET-HNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh-Ccchhhhhcc-CceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 456667777778888888877777665443 3432211000 00001111111 23478888888888777764 445
Q ss_pred HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHH
Q 006937 191 APAYYNLGVVYSE---------LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL-ESAIACYERCLAVSPNFEI 260 (625)
Q Consensus 191 ~~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~ 260 (625)
++.+..-|++|.. .+..+.|+++|+++.+..|... .=.+++.++...|+. +...+.-.
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~Elq~----------- 345 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLELQQ----------- 345 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHHHH-----------
Confidence 6666666776653 3556788889999988888632 233455555544432 22221111
Q ss_pred HHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 006937 261 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 340 (625)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 340 (625)
+-..++.+..+.|..++-.++++-+. ++ .+-...+++.+|+..-+...++.|.....-..+
T Consensus 346 -------IgmkLn~LlgrKG~leklq~YWdV~~---------y~---~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~m 406 (1226)
T KOG4279|consen 346 -------IGMKLNSLLGRKGALEKLQEYWDVAT---------YF---EASVLANDYQKAIQAAEMMFKLKPPVWYLKSTM 406 (1226)
T ss_pred -------HHHHHHHHhhccchHHHHHHHHhHHH---------hh---hhhhhccCHHHHHHHHHHHhccCCceehHHHHH
Confidence 11222333333455444444433221 11 112234667777777777777766654444444
Q ss_pred HHH
Q 006937 341 GVI 343 (625)
Q Consensus 341 a~~ 343 (625)
..+
T Consensus 407 eni 409 (1226)
T KOG4279|consen 407 ENI 409 (1226)
T ss_pred HHH
Confidence 433
No 442
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=67.44 E-value=1.4e+02 Score=29.71 Aligned_cols=61 Identities=7% Similarity=-0.186 Sum_probs=41.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHH
Q 006937 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (625)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~ 182 (625)
.+..+++.++|..|...|+.++...++...............|..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4557889999999999999999876542222111111223344555677899999999986
No 443
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=66.42 E-value=11 Score=21.00 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=8.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 006937 197 LGVVYSELMQYDTALGCYEKA 217 (625)
Q Consensus 197 la~~~~~~~~~~~A~~~~~~a 217 (625)
+-..|.+.|++++|.+.+++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 333444444444444444433
No 444
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=66.12 E-value=28 Score=27.25 Aligned_cols=28 Identities=21% Similarity=0.096 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLEK 77 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 77 (625)
..+..|...+..|++..|.+.+.++-+.
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444444445555555555555554433
No 445
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=65.70 E-value=11 Score=20.89 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQCL 429 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al 429 (625)
..+-..|.+.|++++|.+.|++..
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHh
Confidence 334444555555555555554443
No 446
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.80 E-value=1.6e+02 Score=29.21 Aligned_cols=138 Identities=20% Similarity=0.192 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC----C----CCHH
Q 006937 301 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSIK----P----NFSQ 369 (625)
Q Consensus 301 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----~----~~~~ 369 (625)
.++..+|.-|...|+.+.|++.|.++-..... ....+.++-.+-...|+|..-..+-.+|...- . -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 36777888888899999999988886655433 25567777777888888887777777776541 0 0123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHH-H---HcCCHHHHHHHHHHHHhcCCCChh
Q 006937 370 SLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAYNNLGVLY-R---DAGSISLAIDAYEQCLKIDPDSRN 437 (625)
Q Consensus 370 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~-~---~~g~~~~A~~~~~~al~~~p~~~~ 437 (625)
+...-|.+.+.+++|+.|.++|-.+..- .|.+..++..|..+- + .+..--..-..|+..+++.|.-.+
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~ 310 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLRE 310 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHH
Confidence 4555566666777899888888665432 344444444332211 1 111112233567777788776543
Q ss_pred h
Q 006937 438 A 438 (625)
Q Consensus 438 ~ 438 (625)
.
T Consensus 311 i 311 (466)
T KOG0686|consen 311 I 311 (466)
T ss_pred H
Confidence 3
No 447
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.41 E-value=1.3e+02 Score=28.17 Aligned_cols=103 Identities=12% Similarity=0.050 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCH---H
Q 006937 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA---D 301 (625)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~---~ 301 (625)
.+++.++|..|.+.++.+.+.+.+.+.+...-... .....-.+-..+|.++..+.-.++.++..+..++...+.. .
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg-~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG-LKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 56788888888888888888888877765432211 1111122333445444444445555555555444432211 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFH 328 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~ 328 (625)
.....|...+...++.+|-.++...+.
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 112233333444445555444444443
No 448
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.05 E-value=1.1e+02 Score=32.77 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=69.8
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------HHHHHhHHHHHH---HhcCHHHHHHHHHHHHhcC-CCc
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN------VEAHIGKGICLQ---MQNMGRLAFDSFSEAVKLD-PQN 115 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~-p~~ 115 (625)
..++....+-..|....+|+.-+++.+.. +.-|+. ....+..+.++- +-|+.++|+...-.+++.. |-.
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 34556666777788888998888887774 334432 122233333333 3478899999888888764 445
Q ss_pred HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCCC
Q 006937 116 ACAHTHCGILYKD---------EGRLVEAAESYHKALSADPSY 149 (625)
Q Consensus 116 ~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~ 149 (625)
++.+...|++|.. .+..+.|+++|+++.+..|..
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 6667777777653 456788999999999998874
No 449
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.83 E-value=12 Score=26.89 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHHc
Q 006937 348 DNLDKAVECYQMALS 362 (625)
Q Consensus 348 ~~~~~A~~~~~~al~ 362 (625)
|++++|+.+|..+++
T Consensus 20 gny~eA~~lY~~ale 34 (75)
T cd02680 20 GNAEEAIELYTEAVE 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555544
No 450
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=62.56 E-value=56 Score=23.55 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=11.1
Q ss_pred HHhHHHHHHhCChHHHHHHHHHH
Q 006937 161 TDLGTSLKLAGNTQDGIQKYYEA 183 (625)
Q Consensus 161 ~~l~~~~~~~~~~~~A~~~~~~~ 183 (625)
...+.-+-..|++++|+.+|+++
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 33334444445555555555443
No 451
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.33 E-value=1.4e+02 Score=27.96 Aligned_cols=183 Identities=13% Similarity=0.031 Sum_probs=121.2
Q ss_pred HhHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCHHHHHhHHHHHHH--------hcCHHHHHHHHHHHHhcCCCcHHHH
Q 006937 49 KDALSYANILRSRNKF-VDALALYEIVLEKDSGNVEAHIGKGICLQM--------QNMGRLAFDSFSEAVKLDPQNACAH 119 (625)
Q Consensus 49 ~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~ 119 (625)
..+..+.+...+.++| ..|++.-...+..+|....+|...-.+... ..-.+.-+..+..+++.+|.+...|
T Consensus 32 ~~l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW 111 (328)
T COG5536 32 HPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIW 111 (328)
T ss_pred chHHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhh
Confidence 3455566666666665 577888888888888776666655444433 2234566788899999999999999
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 006937 120 THCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (625)
Q Consensus 120 ~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l 197 (625)
...-.++... .++..-....++.+..++.+-..|...-.++.. +.-.....++....++-..++..++.+..+|...
T Consensus 112 ~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~-ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 112 HHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRT-IEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred HHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeec-chhhccchhHHHHHHhHHHHHhhCCCChHHHHHH
Confidence 8888777665 667888888899999999887664432222211 2222333445555666677788899998888776
Q ss_pred ---HHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006937 198 ---GVVYSELMQ------YDTALGCYEKAALERPMYAEAYCNMG 232 (625)
Q Consensus 198 ---a~~~~~~~~------~~~A~~~~~~al~~~~~~~~~~~~la 232 (625)
-......|+ +++-+++...++-.+|++..++..+-
T Consensus 191 ~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 191 YIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHH
Confidence 333334444 44555666666667888877766543
No 452
>PRK12798 chemotaxis protein; Reviewed
Probab=61.97 E-value=1.8e+02 Score=29.12 Aligned_cols=103 Identities=13% Similarity=-0.029 Sum_probs=43.2
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCHHHHHhHHHH-HHHhcCHHHHHHHHHHHHhcCCCcH---HHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLEK-DSGNVEAHIGKGIC-LQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHC 122 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l 122 (625)
.+.-+..|-..+-.|+-.+|.+.+..+-.. .|...-.++.|... .+...+..+|+..|+.+-=..|... -++..-
T Consensus 112 ~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRs 191 (421)
T PRK12798 112 FDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRS 191 (421)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHh
Confidence 333444444455555555555554443211 11122222222222 2333455555555555554455431 122222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPSYK 150 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~~~ 150 (625)
-.+....|+.+++..+-.+.+.....++
T Consensus 192 i~la~~~g~~~rf~~la~~Y~rRF~~S~ 219 (421)
T PRK12798 192 LFIAAQLGDADKFEALARNYLRRFRHSP 219 (421)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHhccCc
Confidence 2333445555555555555544444433
No 453
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=61.83 E-value=14 Score=26.51 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006937 350 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 397 (625)
Q Consensus 350 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 397 (625)
.++|+.+.++|+..+ ..|++++|+.+|..+++.
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 456666666665432 457888888888877764
No 454
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.50 E-value=2.4e+02 Score=30.50 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=54.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhc--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 006937 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN--MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRL 132 (625)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 132 (625)
...+...+.|..|++..+-+-........++...+..+.+.. .-+++++.+.+=++..-...-.+...|...+..|++
T Consensus 444 i~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~ 523 (829)
T KOG2280|consen 444 IDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRF 523 (829)
T ss_pred hHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcH
Confidence 345677889999998876542222222355666666666553 234455555544444212334566778888889998
Q ss_pred HHHHHHHHHHHhcCCCC
Q 006937 133 VEAAESYHKALSADPSY 149 (625)
Q Consensus 133 ~~A~~~~~~al~~~~~~ 149 (625)
+-|...+ +..|..
T Consensus 524 ~LA~kLl----e~E~~~ 536 (829)
T KOG2280|consen 524 ELARKLL----ELEPRS 536 (829)
T ss_pred HHHHHHH----hcCCCc
Confidence 8877654 445553
No 455
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=59.77 E-value=61 Score=32.51 Aligned_cols=105 Identities=18% Similarity=0.082 Sum_probs=56.5
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----C---H-HH--HHhHHHHHH-------HhcC-----HHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG----N---V-EA--HIGKGICLQ-------MQNM-----GRLAFDS 104 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~---~-~~--~~~la~~~~-------~~g~-----~~~A~~~ 104 (625)
.....+..|..++..|++.+|+..|+.+|..-|- + . ++ +..++.-|. .... .++....
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~ 282 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRN 282 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 3456788999999999999999999999875321 1 1 11 122221121 1111 1122222
Q ss_pred HHHHH-----hcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006937 105 FSEAV-----KLDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (625)
Q Consensus 105 ~~~al-----~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 151 (625)
++-+. ++.|.+.. ++..--...++.++|..|....++.+++.|....
T Consensus 283 lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 283 LELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 22211 12222222 2222234556789999999999999999887543
No 456
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=59.69 E-value=86 Score=32.95 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006937 313 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 392 (625)
Q Consensus 313 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 392 (625)
....+.+....+.-+.-...........+..+-..+..++|-.+|++.+..+|+ ..+...+.-+.+.|-...|...++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 334444444444443333334444445555555555555555555555555555 444455555555555555555554
No 457
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=59.05 E-value=23 Score=20.14 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=9.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 006937 374 LGVVYTVQGKMDAAAEMIEKA 394 (625)
Q Consensus 374 la~~~~~~g~~~~A~~~~~~a 394 (625)
+-..|.+.|++++|.+.|.+.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333444444444444444443
No 458
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=58.52 E-value=5.5e+02 Score=33.76 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHH---HHHHHHHHcC-CHHHHHHHHHHHHH-h--CCCcHHHH
Q 006937 334 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLN---NLGVVYTVQG-KMDAAAEMIEKAIA-A--NPTYAEAY 405 (625)
Q Consensus 334 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~---~la~~~~~~g-~~~~A~~~~~~al~-~--~p~~~~~~ 405 (625)
+.+.+..|.+..+.|-++-++..+.+...+..-. .++.. .-+.||.... ....+++..+..-- . +...++.+
T Consensus 2736 A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff 2815 (3550)
T KOG0889|consen 2736 AWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFF 2815 (3550)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHH
Confidence 3455566777777777777777777776653221 12222 2233444333 34444444332211 1 12235678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 406 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 406 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
...|....++|+.++|-..|..|++++-.-..+|...
T Consensus 2816 ~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~W 2852 (3550)
T KOG0889|consen 2816 TLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEW 2852 (3550)
T ss_pred HhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHH
Confidence 8889999999999999999999999988777776654
No 459
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=58.04 E-value=45 Score=26.56 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006937 338 NNLGVIYKDRDNLDKAVECYQMALSI 363 (625)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~ 363 (625)
..+|....+.+++-.++-.|++|+.+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 460
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=57.98 E-value=12 Score=33.78 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCC
Q 006937 402 AEAYNNLGVLYR---------DAGSISLAIDAYEQCLKIDPDS 435 (625)
Q Consensus 402 ~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~ 435 (625)
+..+...|..+. ..++...|+.++++|++++|+-
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 345566677663 4568889999999999999874
No 461
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=56.91 E-value=30 Score=36.95 Aligned_cols=97 Identities=21% Similarity=0.261 Sum_probs=51.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 006937 307 GVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKD--RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 380 (625)
Q Consensus 307 a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 380 (625)
+..++..+++..|.--|..++.+-|.+ .....+.+.++.. .+++.+++.-..-++...|....++...+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 445555555555555555555554422 2333344444433 3455555555555555556555555555555655
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHH
Q 006937 381 QGKMDAAAEMIEKAIAANPTYAE 403 (625)
Q Consensus 381 ~g~~~~A~~~~~~al~~~p~~~~ 403 (625)
.+.++-|++.+.-.....|.+..
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCcch
Confidence 55555555555545555555533
No 462
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=55.83 E-value=42 Score=28.24 Aligned_cols=102 Identities=21% Similarity=0.177 Sum_probs=63.5
Q ss_pred EEecCCcccchHHHHHHHHHhhccCCcEEEEEeecCccCChhhHHHHHHhhhcCCceeeCCCCCHHHHHHHHHhCCCcEE
Q 006937 491 GYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDIL 570 (625)
Q Consensus 491 g~~s~d~~~h~v~~~~~~~~~~~d~~~~ev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~idil 570 (625)
|.+.+.-.+-|+..=....++.+.-+ +|+.+.+.....+.. .+.++...+.+++|+
T Consensus 2 ~IimGS~SD~~~~~~a~~~L~~~gi~-~dv~V~SaHRtp~~~-----------------------~~~~~~a~~~g~~vi 57 (156)
T TIGR01162 2 GIIMGSDSDLPTMKKAADILEEFGIP-YELRVVSAHRTPELM-----------------------LEYAKEAEERGIKVI 57 (156)
T ss_pred EEEECcHhhHHHHHHHHHHHHHcCCC-eEEEEECcccCHHHH-----------------------HHHHHHHHHCCCeEE
Confidence 33444444555555444555555433 666666554333322 244555566778999
Q ss_pred EecCCCCCCchhhhhccCCCceEEecccCCCCCC-CCCcceEeecCCCCCCC
Q 006937 571 VELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG-LPTIDYRITDSLADPPE 621 (625)
Q Consensus 571 vdl~g~t~~~~~~~~~~r~APvq~~~~g~~~t~g-~~~~Dy~~~d~~~~p~~ 621 (625)
|=..|..++-.--|.+.=+=|| +|-|..++ +..+|-++|---| |++
T Consensus 58 Ia~AG~aa~Lpgvva~~t~~PV----IgvP~~~~~l~G~daLlS~vqm-P~g 104 (156)
T TIGR01162 58 IAGAGGAAHLPGMVAALTPLPV----IGVPVPSKALSGLDSLLSIVQM-PSG 104 (156)
T ss_pred EEeCCccchhHHHHHhccCCCE----EEecCCccCCCCHHHHHHHhcC-CCC
Confidence 9888887766666667777777 57776555 7888988877666 554
No 463
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.81 E-value=1.9e+02 Score=27.69 Aligned_cols=103 Identities=8% Similarity=0.065 Sum_probs=70.5
Q ss_pred HHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 006937 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEA 227 (625)
Q Consensus 157 a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~ 227 (625)
..++.+.+..|.+.|+-+.|++.+.+..+..-. -.-....+|..|....-..+.++-.+..++...+- -..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 455888899999999999999998887765322 23445567777776655555555555555554331 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 006937 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (625)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 259 (625)
-..-|.......++.+|-..|-.++.......
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~E 215 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFTSYE 215 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHccccccee
Confidence 33446667778899999999999887766543
No 464
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.50 E-value=43 Score=29.58 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006937 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (625)
Q Consensus 208 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 257 (625)
+..++..++.++..|+ +.++..++.++...|+.++|.....++....|.
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4445556666666674 778888888888888888888888888888884
No 465
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=55.28 E-value=24 Score=31.92 Aligned_cols=93 Identities=17% Similarity=0.116 Sum_probs=55.3
Q ss_pred HHhCCCHHHHHHHHHHHHHcC---CCCH---------HHHHhHHHHHHHhcCHHH--HHHHHHHHHhc--CCCc--HHHH
Q 006937 58 LRSRNKFVDALALYEIVLEKD---SGNV---------EAHIGKGICLQMQNMGRL--AFDSFSEAVKL--DPQN--ACAH 119 (625)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~---p~~~---------~~~~~la~~~~~~g~~~~--A~~~~~~al~~--~p~~--~~~~ 119 (625)
++..|+|+.|+++.+.+++.+ |+.. +-...-+......|..-+ -...+..+... -|+. ...+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 456899999999999999864 3321 222333444444554211 11222222211 2332 3455
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCCH
Q 006937 120 THCGILYK---------DEGRLVEAAESYHKALSADPSYK 150 (625)
Q Consensus 120 ~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~ 150 (625)
...|..+. ..++...|+.++++++.++|+..
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 66677663 45678899999999999998853
No 466
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.22 E-value=1.3e+02 Score=29.96 Aligned_cols=54 Identities=13% Similarity=-0.058 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhHHHHHHhCC
Q 006937 119 HTHCGILYKDEGRLVEAAESYHKALSA----DPSYKPAAECLAIVLTDLGTSLKLAGN 172 (625)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~l~~~~~~~~~ 172 (625)
+...|++.+....|++|+.++-.+-+. +++..+....++.+-..+-.||+...+
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLkn 223 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKN 223 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcc
Confidence 445566777778888888777655432 222222222233334444555555544
No 467
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=54.79 E-value=62 Score=33.97 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=67.3
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006937 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (625)
Q Consensus 58 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (625)
+.+....+.+....+.-+..........+..+..+-..+..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 345667778888877776666667778888888888999999999999999999988 667888888999999888888
Q ss_pred HHHH
Q 006937 138 SYHK 141 (625)
Q Consensus 138 ~~~~ 141 (625)
.+++
T Consensus 96 ~~~~ 99 (578)
T PRK15490 96 ILKK 99 (578)
T ss_pred HHHH
Confidence 8873
No 468
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=54.71 E-value=26 Score=25.54 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHH
Q 006937 382 GKMDAAAEMIEKA 394 (625)
Q Consensus 382 g~~~~A~~~~~~a 394 (625)
|+.++|+.+|+++
T Consensus 22 g~~e~Al~~Y~~g 34 (79)
T cd02679 22 GDKEQALAHYRKG 34 (79)
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 469
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=54.61 E-value=38 Score=19.19 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=10.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 006937 195 YNLGVVYSELMQYDTALGCYEKA 217 (625)
Q Consensus 195 ~~la~~~~~~~~~~~A~~~~~~a 217 (625)
..+..++.+.|+++.|...++..
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444444444444444444443
No 470
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=54.00 E-value=70 Score=22.02 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHH
Q 006937 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (625)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~ 179 (625)
..+..+...|+|=+|-+.++.+-...+.. ......+.+....|....+.|+...|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~-~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGP-ERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CC-HHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34566778888889999888887765554 44445566666667777777888777664
No 471
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=53.87 E-value=4.3 Score=42.50 Aligned_cols=100 Identities=17% Similarity=0.087 Sum_probs=0.0
Q ss_pred cchHhHHHHHHHHHhCCCHHHHHHHHHHHHH--cCC-CCHHHHHhHHHHHHHhcCHHHHHHHHHHH--HhcCC-CcHHHH
Q 006937 46 FEGKDALSYANILRSRNKFVDALALYEIVLE--KDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEA--VKLDP-QNACAH 119 (625)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a--l~~~p-~~~~~~ 119 (625)
.....++.-++.++..|++..|..++.++-. +.| ......+..|.+....|++++|+..+... ..+.+ .....+
T Consensus 22 ~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~ 101 (536)
T PF04348_consen 22 QRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYH 101 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHH
Confidence 3456678889999999999999999998762 233 23466777889999999999999998741 11212 123456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006937 120 THCGILYKDEGRLVEAAESYHKALSA 145 (625)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~ 145 (625)
...+.++...|++-+|...+-.+-..
T Consensus 102 ~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 102 QLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp --------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 66788888888888887766555443
No 472
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.42 E-value=3.5e+02 Score=29.97 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCC--------C--HHHHHHHHHHHH------------HcCCHHHH--HHHHHH
Q 006937 338 NNLGVIYKDRDNLDKAVECYQMALSIKPN--------F--SQSLNNLGVVYT------------VQGKMDAA--AEMIEK 393 (625)
Q Consensus 338 ~~la~~~~~~~~~~~A~~~~~~al~~~~~--------~--~~~~~~la~~~~------------~~g~~~~A--~~~~~~ 393 (625)
...|.-+...|++.+|++.|...+-.-|- . ..-+...+.-|. ..++.+++ +..|-.
T Consensus 995 l~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt 1074 (1202)
T KOG0292|consen 995 LQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFT 1074 (1202)
T ss_pred HHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhh
Confidence 34566667789999999999988754321 1 112222222221 12234444 222222
Q ss_pred HHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhH
Q 006937 394 AIAANPTYA-EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 442 (625)
Q Consensus 394 al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 442 (625)
-..+.|.+. -++..--.++++++++..|..+-++.+++.|..+.|.+.+
T Consensus 1075 ~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~r 1124 (1202)
T KOG0292|consen 1075 HCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQAR 1124 (1202)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 233444432 3344445678899999999999999999999887776543
No 473
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=53.41 E-value=42 Score=27.28 Aligned_cols=83 Identities=19% Similarity=0.130 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhhccCCcEEEEEeecCccCChhhHHHHHHhhhcCCceeeCCC---------------------CCHHHHH
Q 006937 501 SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG---------------------IDEKKVA 559 (625)
Q Consensus 501 ~v~~~~~~~~~~~d~~~~ev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~ 559 (625)
++|.-...+++.| +++|+|++.+.+...+...+..++ +...|.-+.. ..++.+.
T Consensus 9 SIG~qtLdVi~~~-~d~f~v~~Lsa~~n~~~L~~q~~~----f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~~l~ 83 (129)
T PF02670_consen 9 SIGTQTLDVIRKH-PDKFEVVALSAGSNIEKLAEQARE----FKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPEGLE 83 (129)
T ss_dssp HHHHHHHHHHHHC-TTTEEEEEEEESSTHHHHHHHHHH----HT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHH
T ss_pred HHHHHHHHHHHhC-CCceEEEEEEcCCCHHHHHHHHHH----hCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChHHHH
Confidence 4566666777776 578888888765433333322222 1122222221 1245566
Q ss_pred HHHHhCCCcEEEecCCCCCCchhhhhccC
Q 006937 560 AMVREDKIDILVELTGHTANNKLGMMACQ 588 (625)
Q Consensus 560 ~~i~~~~idilvdl~g~t~~~~~~~~~~r 588 (625)
+.+...++|++|....++.|-++.+.|.+
T Consensus 84 ~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~ 112 (129)
T PF02670_consen 84 ELAEEPEVDIVVNAIVGFAGLKPTLAAIK 112 (129)
T ss_dssp HHHTHTT-SEEEE--SSGGGHHHHHHHHH
T ss_pred HHhcCCCCCEEEEeCcccchHHHHHHHHH
Confidence 77777999999988877777776665543
No 474
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=53.33 E-value=24 Score=25.69 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHHc
Q 006937 348 DNLDKAVECYQMALS 362 (625)
Q Consensus 348 ~~~~~A~~~~~~al~ 362 (625)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
No 475
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=52.63 E-value=1.5e+02 Score=28.84 Aligned_cols=107 Identities=17% Similarity=0.282 Sum_probs=55.2
Q ss_pred CCCCCCeEEEEecCCcccchHHHHHHHHHhhccCCcEEEEEeecCccCChhhHHHHHHhhhc-----------------C
Q 006937 482 KDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKK-----------------G 544 (625)
Q Consensus 482 ~~~~~~lrig~~s~d~~~h~v~~~~~~~~~~~d~~~~ev~~y~~~~~~d~~~~~~~~~~~~~-----------------~ 544 (625)
+.|.-+-+||.|++.- .-...-|+..+ .. -...++|++|.....++.....+....... +
T Consensus 9 ~lP~~p~~I~vITs~~-gAa~~D~~~~~-~~-r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 9 PLPKFPKRIAVITSPT-GAAIQDFLRTL-KR-RNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred CCCCCCCEEEEEeCCc-hHHHHHHHHHH-HH-hCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC
Confidence 3456677899998821 12222333322 22 344588999977655555444343322111 1
Q ss_pred CceeeCCCCCHHHHHHHHHhCCCcEEEecCCCCCCchhhhhccCCCc
Q 006937 545 GIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 591 (625)
Q Consensus 545 ~~~~~~~~~~~~~~~~~i~~~~idilvdl~g~t~~~~~~~~~~r~AP 591 (625)
+.+.|+...+++.+|+.|.+..+-|+.=.+--|+..-+...|.+-||
T Consensus 86 Gs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~ti~D~vAd~ra~ 132 (319)
T PF02601_consen 86 GSIEDLWAFNDEEVARAIAASPIPVISAIGHETDFTIADFVADLRAP 132 (319)
T ss_pred CChHHhcccChHHHHHHHHhCCCCEEEecCCCCCchHHHHHHHhhCC
Confidence 22334555667777777777776655444333444444444444443
No 476
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=52.40 E-value=32 Score=24.16 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 006937 50 DALSYANILRSRNKFVDALALYEIVLE 76 (625)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (625)
.++..|..+-+.|++++|+.+|.+++.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345556666666666666666665544
No 477
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.22 E-value=4.2e+02 Score=30.49 Aligned_cols=150 Identities=14% Similarity=0.088 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-------------------------CC----HHHHHHHHHHHHHcCCHHH
Q 006937 302 AMYNLGVAYGEMLKFDMAIVFYELAFHFNP-------------------------HC----AEACNNLGVIYKDRDNLDK 352 (625)
Q Consensus 302 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-------------------------~~----~~~~~~la~~~~~~~~~~~ 352 (625)
..+.+|.+|...|+..+|+.+|.++..-.. .. ...|...-+++...+-.+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 456678888888888888888887764311 10 1223344455666677777
Q ss_pred HHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHH------
Q 006937 353 AVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDAGSIS------ 419 (625)
Q Consensus 353 A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~------ 419 (625)
+.+...+|++.-|++ +.....+-.-+..+|.+-+|.+.+ -.+|+. ...+..+-.+++..|+.+
T Consensus 1002 vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l~~L~~fp 1077 (1480)
T KOG4521|consen 1002 VCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGELEALATFP 1077 (1480)
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccchHHHhhCC
Confidence 777777777664433 334555555566777777776543 335553 235566666677666543
Q ss_pred ------HHHH-HHHHHHhcCCCChhhhhhHHHHhhhccCCCchH
Q 006937 420 ------LAID-AYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 456 (625)
Q Consensus 420 ------~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 456 (625)
+-.. .++.+-+..|-...-.++++++.. +.+++..+
T Consensus 1078 figl~~eve~~l~esaaRs~~~mk~nyYelLYAfh-~~RhN~Rk 1120 (1480)
T KOG4521|consen 1078 FIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFH-VARHNFRK 1120 (1480)
T ss_pred ccchHHHHHHHHHHHHhhcCccccccHHHHHHHHH-HhhcchhH
Confidence 3334 556666666666655666555542 33444333
No 478
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=52.20 E-value=2.1e+02 Score=26.99 Aligned_cols=120 Identities=15% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 006937 123 GILYKDEGRLVEAAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (625)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 200 (625)
...++..++|++=...+.+......+ ..+..+..+.....+............-.+.++.-++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Q ss_pred HHHcCC----------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 006937 201 YSELMQ----------------------YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (625)
Q Consensus 201 ~~~~~~----------------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 242 (625)
+....= .+.|...+.++++++|....+...+-.+-...|..+
T Consensus 87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
No 479
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.07 E-value=2.5e+02 Score=27.89 Aligned_cols=128 Identities=17% Similarity=0.127 Sum_probs=82.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCC---CHHHHHHHHHHH
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---YAPAYYNLGVVY 201 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~ 201 (625)
+-....+...-.+.++.=++...++.. ...+-.++..+|.-|...|+++.|++.|.++-..-.. ....+.++-.+-
T Consensus 119 vE~~~~~a~~~le~L~~eLk~yK~n~i-KEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VS 197 (466)
T KOG0686|consen 119 VETNNKKAVLKLEKLDNELKSYKDNLI-KESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVS 197 (466)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 333333333334444444444433322 2223445788999999999999999999986554332 356778888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006937 202 SELMQYDTALGCYEKAALERP--------MYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (625)
Q Consensus 202 ~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (625)
...|+|..-..+..++..... -.+.+...-|.+...+++|..|..+|-.+..
T Consensus 198 I~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 198 IYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 899999888888877765410 1133455566667777799999988876543
No 480
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.91 E-value=31 Score=24.95 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=18.5
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 006937 48 GKDALSYANILRSRNKFVDALALYEIVLE 76 (625)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (625)
+-.+...|..+=+.|+|++|+.+|..+++
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455666666667777777777666654
No 481
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.65 E-value=66 Score=34.58 Aligned_cols=103 Identities=16% Similarity=0.099 Sum_probs=82.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CHHHHHhHHHHHHH--hcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 006937 51 ALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQM--QNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (625)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (625)
....++.+++.++|..|.--|..++..-|. ........+.|+.. .|++.+++.-..-++...|....++...+.
T Consensus 56 ~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~ 135 (748)
T KOG4151|consen 56 LKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRAR 135 (748)
T ss_pred HHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhh
Confidence 345677788888899987778777777663 23455566666654 579999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 006937 125 LYKDEGRLVEAAESYHKALSADPSYKPAA 153 (625)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 153 (625)
+|...+.++-|++...-.....|.+..+.
T Consensus 136 ~y~al~k~d~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 136 KYEALNKLDLAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 99999999999999877788888885543
No 482
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=51.56 E-value=2.8e+02 Score=28.20 Aligned_cols=90 Identities=16% Similarity=0.133 Sum_probs=60.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Q 006937 340 LGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYR 413 (625)
Q Consensus 340 la~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~ 413 (625)
+........+.+++..++-+.-.. |.. +.....+.+.+.+.|..++++..++.-+.. .|++ .....|-..+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s-~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~-~s~n~Lmd~fl 149 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHS-PNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN-FSFNLLMDHFL 149 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcC-cccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh-hhHHHHHHHHh
Confidence 344444444566666666654332 222 224457778889999999999998876553 5664 34566677889
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 006937 414 DAGSISLAIDAYEQCLKI 431 (625)
Q Consensus 414 ~~g~~~~A~~~~~~al~~ 431 (625)
+.|++..|.+........
T Consensus 150 ~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 150 KKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred hcccHHHHHHHHHHHHHh
Confidence 999999999988776554
No 483
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=49.66 E-value=2.5e+02 Score=27.02 Aligned_cols=147 Identities=14% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCCccccccccCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHhHHHHHHHhcCHHHHHHHHHHHHhc--
Q 006937 34 GSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL-- 111 (625)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 111 (625)
+.....+.+.-..-....+..-+..+..+++.+.++.+++.+..+|--.+..+..+.++.++| ++.+...+...+..
T Consensus 85 P~~~~~g~T~L~~p~ad~~~~~~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL 163 (301)
T TIGR03362 85 PMSNADGRTRLAPPPADRVADYQELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFL 163 (301)
T ss_pred CCCCCCCCccCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
Q ss_pred ------------------------------CC---------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006937 112 ------------------------------DP---------------QNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (625)
Q Consensus 112 ------------------------------~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 146 (625)
.+ .+......-+..+...+..+.|+..++..+...
T Consensus 164 ~RlP~L~~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~ 243 (301)
T TIGR03362 164 ERLPGLLELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQA 243 (301)
T ss_pred HhCcChhhcccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHh
Q 006937 147 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (625)
Q Consensus 147 ~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 185 (625)
++...-... ...++.++...|.++-|...|+...+
T Consensus 244 ~s~R~rf~~----rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 244 REPRERFHW----RLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred CChHHHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHH
No 484
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.03 E-value=3e+02 Score=30.49 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=27.7
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS 79 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 79 (625)
.....+..|..+...|++.+|++.|+.++-.-|
T Consensus 990 ~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~ 1022 (1202)
T KOG0292|consen 990 QLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIP 1022 (1202)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHhhee
Confidence 355677889999999999999999999986544
No 485
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=48.81 E-value=55 Score=31.52 Aligned_cols=88 Identities=16% Similarity=0.286 Sum_probs=50.4
Q ss_pred CCCCeEEEEecCCcccchHHHHHHHHHhhccCCcEEEEEeecCccCChhhHHHHHHhhhcCCceee-----C---CCCCH
Q 006937 484 PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRD-----I---YGIDE 555 (625)
Q Consensus 484 ~~~~lrig~~s~d~~~h~v~~~~~~~~~~~d~~~~ev~~y~~~~~~d~~~~~~~~~~~~~~~~~~~-----~---~~~~~ 555 (625)
.++++|||.+-+.+...-+-..+. .-+.+||.+.+.. .-|....-+++. .|.+ . +.+.+
T Consensus 14 ~G~PiRVGlIGAG~mG~~ivtQi~------~m~Gm~vvaisd~-~~~~ak~A~~~a------g~~~~~~~e~~~~s~~a~ 80 (438)
T COG4091 14 EGKPIRVGLIGAGEMGTGIVTQIA------SMPGMEVVAISDR-NLDAAKRAYDRA------GGPKIEAVEADDASKMAD 80 (438)
T ss_pred cCCceEEEEecccccchHHHHHHh------hcCCceEEEEecc-cchHHHHHHHHh------cCCcccccccchhhHHHH
Confidence 478999999988765444322111 3467999988753 233333333321 1222 1 11111
Q ss_pred ----------HHHHHHHHhCCCcEEEecCCCCC-Cchhhh
Q 006937 556 ----------KKVAAMVREDKIDILVELTGHTA-NNKLGM 584 (625)
Q Consensus 556 ----------~~~~~~i~~~~idilvdl~g~t~-~~~~~~ 584 (625)
.+.-..|..+.||++||..|+.. |.+..+
T Consensus 81 Ai~aGKi~vT~D~~~i~~~~~IdvIIdATG~p~vGA~~~l 120 (438)
T COG4091 81 AIEAGKIAVTDDAELIIANDLIDVIIDATGVPEVGAKIAL 120 (438)
T ss_pred HHhcCcEEEecchhhhhcCCcceEEEEcCCCcchhhHhHH
Confidence 23456788999999999999854 334433
No 486
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.70 E-value=1.8e+02 Score=29.13 Aligned_cols=114 Identities=18% Similarity=-0.002 Sum_probs=57.4
Q ss_pred HHhHHHHHHHhcCHHHHHHHHHHHHhc-----------CCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCH
Q 006937 85 HIGKGICLQMQNMGRLAFDSFSEAVKL-----------DPQNACAHTHCGILYKDEGRL---VEAAESYHKALSADPSYK 150 (625)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~ 150 (625)
++..|.+.+....|++|+.++-.|-+. -.+.+-.-..+-+||+...+. ++|..-+..+-+-.....
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 455677778888888888777655432 222333444556777776653 234333333222111000
Q ss_pred HHHHHHHHHHHHhHHHHHHhCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006937 151 PAAECLAIVLTDLGTSLKLAGN--TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (625)
Q Consensus 151 ~~~~~~a~~~~~l~~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 219 (625)
. -++.+.+.-+|. .+.|+- ...+...|.+.+.+|+-++|.++++.+..
T Consensus 246 G---------enl~Rl~~lKg~~spEraL~------------lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 246 G---------ENLSRLRSLKGGQSPERALI------------LRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred h---------hhhHhhhhccCCCChhHHHH------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 0 001111111121 111111 12345567788888888888888887754
No 487
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.62 E-value=1.5e+02 Score=24.09 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006937 318 MAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMA 360 (625)
Q Consensus 318 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 360 (625)
.+.+.|..+... ....+..|...|..+...|++++|.+.|+.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 444444444432 3334555555555555555555555555544
No 488
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.08 E-value=2.4e+02 Score=26.53 Aligned_cols=106 Identities=8% Similarity=-0.050 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHhhCCCC---HH
Q 006937 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---AP 192 (625)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~---~~ 192 (625)
.+++.++|..|.+.++.+.+.+.+.+.++..-... .....-..-..+|.+|..+.-.++.++.....++...+. -.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg-~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG-LKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 56888889999998988888888877765432211 111112224456666666666677777777777765442 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006937 193 AYYNLGVVYSELMQYDTALGCYEKAALERP 222 (625)
Q Consensus 193 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 222 (625)
.-...|...+...++.+|..++...+....
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 233456666777888898888888776543
No 489
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.59 E-value=47 Score=32.09 Aligned_cols=59 Identities=14% Similarity=-0.029 Sum_probs=43.4
Q ss_pred cCcchHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------CCHHHHHhHHHHHHHhcCHHHHH
Q 006937 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDS--------GNVEAHIGKGICLQMQNMGRLAF 102 (625)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~ 102 (625)
.....+.++..|+..+..+++++|...|..+..+.. ++.++++.+|..++..++.+..+
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999999998876521 23456666777766666655443
No 490
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=46.46 E-value=1e+02 Score=24.09 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=29.4
Q ss_pred HHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 006937 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (625)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (625)
.....|...+..|++..|.+.+.++.+..+..+-.+..-+.....+||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344556666777777777777777766654444455545555555553
No 491
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=45.86 E-value=2.9e+02 Score=26.81 Aligned_cols=97 Identities=12% Similarity=-0.019 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 311 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 390 (625)
Q Consensus 311 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 390 (625)
...|+...|.++-.+. + -.+...|......+...++|++-..+... ...|-.|.-...++...|+..+|..+
T Consensus 188 i~~~~~k~A~kl~k~F-k--v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~y 259 (319)
T PF04840_consen 188 IEMGQEKQAEKLKKEF-K--VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASKY 259 (319)
T ss_pred HHCCCHHHHHHHHHHc-C--CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHHH
Confidence 4455555554442221 2 22345556666666666666655443321 22344555555666666677777666
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006937 391 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 424 (625)
Q Consensus 391 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 424 (625)
..++ ++ ......|.+.|++.+|.+.
T Consensus 260 I~k~----~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 260 IPKI----PD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHhC----Ch-----HHHHHHHHHCCCHHHHHHH
Confidence 6661 11 2344556666666666543
No 492
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=45.82 E-value=1.1e+02 Score=22.11 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=21.2
Q ss_pred chHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 006937 47 EGKDALSYANILRSRNKFVDALALYEIVLE 76 (625)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 76 (625)
.+-.++..|..+-..|+|++|+.+|.++++
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345566777777778888888777776654
No 493
>PF11897 DUF3417: Protein of unknown function (DUF3417); InterPro: IPR024517 This domain of unknown function is found at the N terminus of members of the glycogen phosphorylase family.
Probab=44.99 E-value=1e+02 Score=24.63 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCeEEEEecCCcccch
Q 006937 458 FEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHS 501 (625)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrig~~s~d~~~h~ 501 (625)
....++....+..-....+.|-..+.....-.|+|+|.+|+-|-
T Consensus 73 l~~~~~v~~~f~~Ym~~~~~W~~~~~~~~~~~IAYFSmEfGlhe 116 (118)
T PF11897_consen 73 LARYDRVYARFEEYMSQKPTWFQEPGDTPNPPIAYFSMEFGLHE 116 (118)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCCCEEEEcccccccc
Confidence 33333444444433333344544433345677999999999875
No 494
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=44.00 E-value=3.4e+02 Score=26.98 Aligned_cols=43 Identities=23% Similarity=0.155 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006937 282 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 324 (625)
Q Consensus 282 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 324 (625)
.-+|+.+++.++...|.+......+..+|...|-...|...|.
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555555555555555555555555555555555555553
No 495
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=43.42 E-value=56 Score=18.80 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHh
Q 006937 417 SISLAIDAYEQCLK 430 (625)
Q Consensus 417 ~~~~A~~~~~~al~ 430 (625)
+..+|..+|+++.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 45555555555543
No 496
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=43.21 E-value=75 Score=22.28 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=11.4
Q ss_pred hHHHHHHhCChHHHHHHHHHHH
Q 006937 163 LGTSLKLAGNTQDGIQKYYEAL 184 (625)
Q Consensus 163 l~~~~~~~~~~~~A~~~~~~~l 184 (625)
.|...-..|++++|+.+|.+++
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3333444466666666655544
No 497
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.10 E-value=2.3e+02 Score=24.76 Aligned_cols=72 Identities=11% Similarity=-0.022 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHhHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 006937 132 LVEAAESYHKALSADPSYKPAAECLAIV-LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (625)
Q Consensus 132 ~~~A~~~~~~al~~~~~~~~~~~~~a~~-~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 204 (625)
.+.|+..++..-+-.+.........-.+ -.....++.+.|.+++|.+.+++... +|++......|..+-...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcc
Confidence 4556666666555444322221111111 12223345666777777777777666 555554444444443333
No 498
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=42.53 E-value=44 Score=24.09 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006937 314 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 362 (625)
Q Consensus 314 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 362 (625)
...++|+.++.+++..+.. |++++|+.+|..+++
T Consensus 1 ~~l~~Ai~lv~~Av~~D~~---------------g~y~eA~~lY~~ale 34 (75)
T cd02684 1 ESLEKAIALVVQAVKKDQR---------------GDAAAALSLYCSALQ 34 (75)
T ss_pred CcHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHH
No 499
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.30 E-value=4.9e+02 Score=28.35 Aligned_cols=291 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred hCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCC
Q 006937 170 AGNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE---AYCNMGVIYKNRGD 240 (625)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~g~ 240 (625)
.|+..+|.+.+.-.+-.+.. ...+++.+|.++...|+- ..+++...++...+..- +...+|.+-+-..+
T Consensus 370 ~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~ 447 (929)
T KOG2062|consen 370 RGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN 447 (929)
T ss_pred ccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhccccc
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006937 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 320 (625)
Q Consensus 241 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~ 320 (625)
.+-.+.++..+..+..-...-..++.-+..+| ..+.+.-.+.+.-+.+..-+...--...|..+...|+.++|-
T Consensus 448 -~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlG-----t~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad 521 (929)
T KOG2062|consen 448 -EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLG-----TANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDAD 521 (929)
T ss_pred -HHHHHHHHHHHhccchhhhhHHHHhhhhHhhC-----cCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhH
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006937 321 VFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 398 (625)
Q Consensus 321 ~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 398 (625)
.+.++++.-...- ..-.+.+|..|...|+...-...+.-++.--.++..-..-+|.-+....+++.-....+-..+..
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~ 601 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESY 601 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhc
Q ss_pred CCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhhhhHHHHhhhccCCCchHHHHHHHHHHHHHhhh
Q 006937 399 PTYAE--AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRL 471 (625)
Q Consensus 399 p~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (625)
.-+.. +-..||.++...|. .+|+..++.... +|.+- .++..++++.++.-...++.-.....+++.+.+.
T Consensus 602 N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~f-VRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kv 673 (929)
T KOG2062|consen 602 NPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDF-VRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKV 673 (929)
T ss_pred ChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHH-HHHHHHHHHHHHHHhcccccCchHHHHHHHHHHH
No 500
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.89 E-value=2.4e+02 Score=24.65 Aligned_cols=62 Identities=11% Similarity=-0.032 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHcCCCCH--------HHHHhHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 006937 64 FVDALALYEIVLEKDSGNV--------EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (625)
Q Consensus 64 ~~~A~~~~~~~l~~~p~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (625)
.+.|+..++.+-+..|..- -.......++.+.|.+++|.+.+++... +|++......|..+-
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II 154 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHH
Confidence 3456666665544433210 1122234456677777777777777766 665554444444443
Done!