BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006939
(625 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F SGS D+T+K WD+ T + + + VR + F+ G+ +L C ++L+V+ +
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 62 EPIRCHDAVDVGWSRLSDLNVHE 84
+ RC ++ ++ L+ H+
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHK 390
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60
SG S SAD T+K WD + FE I + V ++ P+G ++ + ++K++
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 61 WEPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 102
+ C W R+ N +G L+ N V VWVV
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 263
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSWEPIRC 66
S S D T+K WD ET + + T V+ ++F+ G+ L C ++K++ ++ C
Sbjct: 125 SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 184
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 63
SGS D T++ WD+ET + + + VRC+ + DGR ++ G ++ + V W+P
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM-VKVWDP 266
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 7 FSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN 42
SGS DRT+K W+ ET E I + TS VRC+ +
Sbjct: 173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 208
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 8 SGSADRTVKFWDLETFELIGS-AGP--ETSGVRCLTFNPD 44
SG+AD TVK WD++T + + + GP S V CL FN +
Sbjct: 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 373
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 194
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 106 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 165
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 148 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 196
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 87 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 146
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 129 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 177
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 99 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 158
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 141 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 189
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 83 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 142
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 125 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 173
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 78 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 137
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 120 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 168
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 175
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVF 59
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVF 59
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 81 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 140
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 171
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
S S D+T+K WD+ + + + + ++ V C FNP ++ G ES++++ + +C
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESL 56
SGS D +V+ WD++T + + + + V + FN DG ++ ++ L
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
S S D+TVK W+ +L+ + +S VR + F+PDG+T+
Sbjct: 74 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTI 113
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
S S D+TVK W+ +L+ + +S VR + F+PDG+T+
Sbjct: 197 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTI 236
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
S S D+TVK W+ +L+ + +S VR + F+PDG+T+
Sbjct: 361 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTI 400
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
S S D+TVK W+ +L+ + +S VR + F+PDG+T+
Sbjct: 443 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTI 482
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
S S D+TVK W+ +L+ + +S VR + F+PDG+T+
Sbjct: 484 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTI 523
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
S S D+TVK W+ +L+ + +S V + F PDG+T+
Sbjct: 238 SASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTI 277
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 5 FHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFS 60
F S S D+T++ WDL T S V + F+PD R +L G +K+++
Sbjct: 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 7 FSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVF 59
+GS+D TV+ WD+ T E++ + V L FN +G + C S+ V+
Sbjct: 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVW 238
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 5 FHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTF 41
+ S S DRT+K W+ T E + + G+ CL +
Sbjct: 268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 304
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
SGS+D T++ WD+E + VRC+ F D + ++ G ++ K+ W+ +
Sbjct: 311 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG-KIKVWDLVAAL 367
Query: 68 DA-VDVGWSRLSDLNVHEGKLLGCSYNQ 94
D G L L H G++ +++
Sbjct: 368 DPRAPAGTLCLRTLVEHSGRVFRLQFDE 395
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 4 YFHFSGSADRTVKFWDLETFELIGSAG-----PETSGVRCLTFNPDGRTLLCGLHES-LK 57
+F + S D+TVK WDL ++ G A P V F+PDG LL +S ++
Sbjct: 264 WFLATASVDQTVKIWDLR--QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIR 321
Query: 58 VFS 60
V+S
Sbjct: 322 VYS 324
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 45
SG D VK WDL T L+ T+ V +T +PDG
Sbjct: 171 SGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDG 208
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 4 YFHFSGSADRTVKFWDLETFELIGSAG-----PETSGVRCLTFNPDGRTLL 49
+F + S D+TVK WDL ++ G A P V F+PDG LL
Sbjct: 264 WFLATASVDQTVKIWDLR--QVRGKASFLYSLPHRHPVNAACFSPDGARLL 312
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 4 YFHFSGSADRTVKFWDLETFELIGSAG-----PETSGVRCLTFNPDGRTLLCGLHES-LK 57
+F + S D+TVK WDL ++ G A P V F+PDG LL +S ++
Sbjct: 265 WFLATASVDQTVKIWDLR--QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIR 322
Query: 58 VFS 60
V+S
Sbjct: 323 VYS 325
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 51
G F +G+ DR ++ WD+E +++ + L + P G L+ G
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP-DGRTLLCG-LHESLKVFSWE 62
SGS DRTV+ WDL T + + E GV + +P DG+ + G L +++V+ E
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPET-SG------VRCLTFNPDGRTLLCG-LHE 54
G + +GS DR V+ WD ET L+ E SG V + F DG++++ G L
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278
Query: 55 SLKVFS 60
S+K+++
Sbjct: 279 SVKLWN 284
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 62
SG D +VK WDL ++ S +S V C+ P T+ E ++ W+
Sbjct: 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 8 SGSADRTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLH 53
S S D ++ WDLE + I S AGP + L F+PD + L G H
Sbjct: 97 SSSLDAHIRLWDLENGKQIKSIDAGPVDA--WTLAFSPDSQYLATGTH 142
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 51
G F SGS D T++ WDL T T V + F+ D R ++ G
Sbjct: 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 146
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 51
G F SGS D T++ WDL T T V + F+ D R ++ G
Sbjct: 75 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 123
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 25/162 (15%)
Query: 100 WVVDISRIEP-YTIGS-VTRVNGLSESKSSASGNLSVLNENSAKASLGKLSVSQNSDPLV 157
W +R+ P + +G+ T +NGL S S+ + L+V+N K +L VS + DP
Sbjct: 151 WYHTAARLGPRFPLGADATLINGLGRSASTPTAALAVINVQHGKRYRFRL-VSISCDPNY 209
Query: 158 KETKSLGRLSVSQ----NSDPLLKETKTLGRLSVSQNSEPAKESKVLSSTGSVPGTPQRV 213
+ L+V + NS PLL ++ ++ +Q + S VL++ +V R
Sbjct: 210 TFSIDGHNLTVIEVDGINSQPLLVDSI---QIFAAQ-----RYSFVLNANQTVGNYWIRA 261
Query: 214 NLNMGSKTSV--VNST------AVVSKRTSTRANTASNVPIL 247
N N G+ +NS A V++ T+T+ T S +P++
Sbjct: 262 NPNFGTVGFAGGINSAILRYQGAPVAEPTTTQ--TTSVIPLI 301
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 16 KFWDL-------ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHD 68
K+W L F L S+G T+ V CL ++ DG +++ G+ E+ ++ W
Sbjct: 84 KYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV-ENGELRLWNKTG--- 139
Query: 69 AVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 107
+ L+ LN H ++ +N+ + +D+ +
Sbjct: 140 ------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENV 172
>pdb|2DGZ|A Chain A, Solution Structure Of The Helicase And Rnase D C-Terminal
Domain In Werner Syndrome Atp-Dependent Helicase
Length = 113
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 101 VVDISRIEPYTIGSVTRVNGLSESKSSASGNL 132
+VD++++ P T+ +V R++G+SE K++ L
Sbjct: 52 LVDMAKMRPTTVENVKRIDGVSEGKAAMLAPL 83
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 51
S SAD+T K W + + VRC F+ DG L G
Sbjct: 1102 STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATG 1145
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 9 GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEP---- 63
G D +K +L + S VR + F DG+TL+ +S ++V++W+
Sbjct: 979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038
Query: 64 -IRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 108
++ H + L D +LL S++ + V VW V RIE
Sbjct: 1039 FLQAHQETVKDFRLLQD-----SRLLSWSFDGT-VKVWNVITGRIE 1078
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 9 GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEP---- 63
G D +K +L + S VR + F DG+TL+ +S ++V++W+
Sbjct: 986 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1045
Query: 64 -IRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 108
++ H + L D +LL S++ + V VW V RIE
Sbjct: 1046 FLQAHQETVKDFRLLQD-----SRLLSWSFDGT-VKVWNVITGRIE 1085
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 51
S SAD+T K W + + VRC F+ DG L G
Sbjct: 1109 STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATG 1152
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 61
SG SGS D +K WDL ++ S + V C+ +P ++ E ++ W
Sbjct: 138 SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
Query: 62 EPIRC 66
+ RC
Sbjct: 198 D-TRC 201
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR----------TLLCGLHESLK 57
S S D+TVK W+L +L + T V + +PDG LL L E K
Sbjct: 536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595
Query: 58 VFSWE 62
++S E
Sbjct: 596 LYSLE 600
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 7 FSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 61
S D+ VK W+L F++ S + LT +PDG TL+ + ++ W
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLW 223
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 7 FSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 61
S D+ VK W+L F++ S + LT +PDG TL+ + ++ W
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLW 223
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 7 FSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 61
S D+ VK W+L F++ S + LT +PDG TL+ + ++ W
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLW 223
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 7 FSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 61
S D+ VK W+L F++ S + LT +PDG TL+ + ++ W
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLW 223
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVF 59
+GS+D +K WDL E + T+ V F+PD + L C +LK++
Sbjct: 724 TGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
>pdb|2E1E|A Chain A, Crystal Structure Of The Hrdc Domain Of Human Werner
Syndrome Protein, Wrn
pdb|2E1F|A Chain A, Crystal Structure Of The Hrdc Domain Of Human Werner
Syndrome Protein, Wrn
Length = 103
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 22/27 (81%)
Query: 101 VVDISRIEPYTIGSVTRVNGLSESKSS 127
+VD++++ P T+ +V R++G+SE K++
Sbjct: 45 LVDMAKMRPTTVENVKRIDGVSEGKAA 71
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 7 FSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 61
S D+ VK W+L F++ S + LT +PDG TL+ + ++ W
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLW 217
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 45
SGS D TV ++ F+ + G T V + +NPDG
Sbjct: 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,994,813
Number of Sequences: 62578
Number of extensions: 585741
Number of successful extensions: 1260
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1104
Number of HSP's gapped (non-prelim): 172
length of query: 625
length of database: 14,973,337
effective HSP length: 105
effective length of query: 520
effective length of database: 8,402,647
effective search space: 4369376440
effective search space used: 4369376440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)