BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006939
(625 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog
OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3
Length = 837
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/645 (58%), Positives = 461/645 (71%), Gaps = 29/645 (4%)
Query: 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 63
+ +GSADRTVKFWDLETFELIGS GPET+GVRCL+FNPDG+T+LCGL ESLK+FSWEP
Sbjct: 198 FLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQESLKIFSWEP 257
Query: 64 IRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSE 123
IRCHD VDVGWSRLSD+NVHEGKLLGCSYNQSCVGVWVVD+SR EP G + NG E
Sbjct: 258 IRCHDGVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEPCMAGDTAQSNGHPE 317
Query: 124 SKSSASGNLSVLNENSAKASLGKLSVSQNSDPLVKETKSLGRLSVSQNSDP--------- 174
+S + + VLN+N++K LGKLSVSQN DPL+KETKSLGRLSVSQNSDP
Sbjct: 318 KRSCSGRDPVVLNDNNSKTVLGKLSVSQNVDPLLKETKSLGRLSVSQNSDPSTKETKSIG 377
Query: 175 ----------LLKETKTLGRLSVSQNSEPAKESKVLSSTGSVPGTPQRVN-LNMGSKTSV 223
+KE+K LGRLSVSQNS+ +KES+ SSTGS+PGTP RV+ N+ TS
Sbjct: 378 RSSTSQNSESSMKESKPLGRLSVSQNSDVSKESRTFSSTGSLPGTPHRVSSTNVSKATSG 437
Query: 224 VN---STAVVSKRTSTRANTASNVPILNKSDIVPVIVPRTNTRFEQAVESRKDIDVIGRT 280
V+ S A S+R T+AN +N P+ +D PVIVPR + R EQA ESR ++D+I RT
Sbjct: 438 VSTAVSNAATSRRNFTKANPKAN-PVNKAADFAPVIVPRADPRIEQATESRAELDIIART 496
Query: 281 MPFSLQSKATDSRKFQNSGDEVDQPAVSVLCENTGSKATEVSSVADRNTFAAIKGSIQGV 340
MP+SLQ A DSR+ +S + D P SVL E + S+ E +++ D T K ++G
Sbjct: 497 MPYSLQ--AADSRRSPSSRNNPDLPDASVL-EMSESQPVEPNNIPDGGTLPGGKVGMRGA 553
Query: 341 SVTERNSKEDIFTVSGKSGTMSMSESPASYEDERYDSLGHKSNRDGYAMESQKRGRMHSL 400
TER+ + + G+S + S SP DE YD + H+SNRD ESQK GR SL
Sbjct: 554 --TERSINDFRYKRYGRSNSRSRMGSPPRNHDENYDLVSHRSNRDPSPTESQKGGRFQSL 611
Query: 401 VINWEKRGSSPNYDGPTSSISSGTVSTVSMPPFNAFKQRGYSSSAEKETASVSDEDATAD 460
VIN E+RG N++GP S+ SSG + ++ P N FKQRG E+ S S+E+ D
Sbjct: 612 VINRERRGRFSNFEGPVSNFSSGNMPAPNIRPSNMFKQRGNHMPVEQGIDSPSEENIVED 671
Query: 461 VMEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQKMADHTVLADVMSIVVEKIEI 520
+M +H+QFVSSMQSRLAKLQ V RYWERNDVK +I +++KMAD+ V ADV+ I+ E+ EI
Sbjct: 672 IMGKHNQFVSSMQSRLAKLQVVRRYWERNDVKNSIGSIEKMADNAVTADVLGIITERNEI 731
Query: 521 VTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISASTSVGVDIEAE 580
+TLD C+ LLPLLT LL S MD+HLS+SLD+LLKLVR +GS IYS++SA SVGVDIEAE
Sbjct: 732 LTLDNCTSLLPLLTALLGSGMDQHLSVSLDLLLKLVRLYGSPIYSSLSAPASVGVDIEAE 791
Query: 581 QRIERCNRCFIELEKVKCCLPTLMRRGGSVAKSAQELNLALQDVS 625
QRIER +RCF+ELEKVK CLP+L RRGG VAKS ELNLA Q+VS
Sbjct: 792 QRIERYSRCFVELEKVKACLPSLARRGGLVAKSVLELNLAFQEVS 836
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 62
G F SGS D +K WD+ I + T GV L F PDGR ++ G +++ V W+
Sbjct: 113 GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNI-VKVWD 171
Query: 63 PIRCHDAVDVGWSRLSDLNVHEGKLLGCSYN 93
+ G L++ HEG++ ++
Sbjct: 172 -------LTAG-KLLTEFKSHEGQIQSLDFH 194
>sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus
purpuratus GN=KATNB1 PE=1 SV=1
Length = 690
Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 83/140 (59%), Gaps = 10/140 (7%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
SGS+DRTV+FWDLETF+L+ S P S VR ++F+PDG L C + L F WEPIRC
Sbjct: 202 SGSSDRTVQFWDLETFQLVSSTSPGASAVRSISFHPDGSYLFCSSQDMLHAFGWEPIRCF 261
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI-------EPYTIGSVTRVNG 120
D VGW +++D + +L+G S+N + V V+V D+SR+ EP + S T G
Sbjct: 262 DTFSVGWGKVADTVIASTQLIGASFNATNVSVYVADLSRMSTTGIAQEPQSQPSKTPSGG 321
Query: 121 LSESKS---SASGNLSVLNE 137
E S +ASG + + E
Sbjct: 322 AEEVPSKPLTASGRKNFVRE 341
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 4/195 (2%)
Query: 430 MPPFNAFKQRGYSSSAEKETASVSDEDATADVMEQHSQFVSSMQSRLAKLQAVYRYWERN 489
+PP +A + ++ A ++ SD + + + H + SR L V W
Sbjct: 499 LPPAHAQQAPRVNAPASRKQ---SDSERIEGLRKGHDSMCQVLSSRHRNLDVVRAIWTAG 555
Query: 490 DVKGAISAMQKMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISL 549
D K ++ ++ M D +L D+++I++ K + LD+C +LP L LL S + ++ S
Sbjct: 556 DAKTSVESVVNMKDQAILVDILNIMLLKKSLWNLDMCVVVLPRLKELLSSKYENYVHTSC 615
Query: 550 DILLKLVRTFGSMIYSAISASTSVGVDIEAEQRIERCNRCFIELEKVKCCLPTLMRRGGS 609
L +++ F S+ I S G+DI E+R +C++C+ L + + G
Sbjct: 616 ACLKLILKNFTSLFNQNIKCPPS-GIDITREERYNKCSKCYSYLIATRGYVEEKQHVSGK 674
Query: 610 VAKSAQELNLALQDV 624
+ S +EL+L L +
Sbjct: 675 LGSSFRELHLLLDQL 689
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL 49
G F SGS D VK WD+ I + + V + F+PDG+ L+
Sbjct: 113 GEFVASGSTDTNVKLWDVRRKGCIYTYKGHSDQVNMIKFSPDGKWLV 159
>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus
GN=KATNB1 PE=2 SV=2
Length = 657
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 71/106 (66%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 61
S Y SGS+DRT++FWDLE F ++ E + VRC+ FNPDG L G +SL+V+ W
Sbjct: 200 SEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILFNPDGCCLYGGFQDSLRVYGW 259
Query: 62 EPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 107
EP RC D V V W +++DL+V +L+G S+ QS V +VVD+SR+
Sbjct: 260 EPERCFDVVVVNWGKVADLSVCHNQLIGVSFAQSTVSSFVVDLSRV 305
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 79/147 (53%)
Query: 450 ASVSDEDATADVMEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQKMADHTVLAD 509
A ++DE+ + + + H + SR L V W +D+K ++ A D +V+ D
Sbjct: 482 AELTDEEIMSQIRKGHKTVCMVLTSRHKNLDTVRAVWSTSDMKNSVDAAVATNDLSVVVD 541
Query: 510 VMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISA 569
+++IV + + LD+C+ +LP + LL+S + ++ L +++ F +I ++A
Sbjct: 542 LLNIVNQTASLWKLDLCTVVLPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDILAA 601
Query: 570 STSVGVDIEAEQRIERCNRCFIELEKV 596
SVGVDI E+R+ +C C+ +L+ +
Sbjct: 602 PPSVGVDITREERLHKCRLCYKQLKNI 628
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
G F SGS D +K WD+ I T VRCL F+PDG+ L
Sbjct: 117 GSFVASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFSPDGKWL 162
>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio
GN=katnb1 PE=2 SV=1
Length = 694
Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 78/122 (63%), Gaps = 4/122 (3%)
Query: 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 63
Y SGSADRTVK WDLE F +IGS+ ET VR + FNPDG L G +L+V+ WEP
Sbjct: 202 YLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGSENTLRVYGWEP 261
Query: 64 IRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSE 123
RC D V VGW ++SDL + +++ SY+ + V +VVD++R++ GSV + GL +
Sbjct: 262 DRCFDVVHVGWGKVSDLAISNNQMIAVSYSHTNVSWYVVDLNRVK--KSGSV--IQGLIQ 317
Query: 124 SK 125
K
Sbjct: 318 DK 319
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 93/180 (51%)
Query: 442 SSSAEKETASVSDEDATADVMEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQKM 501
S + + +++ DE+A A + + H + SR L +V W DVK ++ + M
Sbjct: 510 SHARNAKASAMGDEEALAQIRKGHDTMCVMLSSRSKNLDSVRSVWASGDVKTSLDSAVSM 569
Query: 502 ADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGS 561
D +++ DV++I+ K + LD+C+ +LP + LL+S + ++ L +++ F
Sbjct: 570 NDLSIVVDVLNIINLKPSLWKLDLCTSILPQIEELLQSRYESYVQTGCMSLKLILKRFWP 629
Query: 562 MIYSAISASTSVGVDIEAEQRIERCNRCFIELEKVKCCLPTLMRRGGSVAKSAQELNLAL 621
+I ++A SVGVDI E+R ++C C+ +L+ + + + G + +EL L +
Sbjct: 630 LISDTLNAPPSVGVDITREERHQKCKACYKQLKNLSNVVKNRAEQVGRHGSTFRELQLLM 689
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
G + SGS D +K WD+ + T VRCL F+PDG+ L
Sbjct: 117 GEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWL 162
>sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis
GN=katnb1 PE=1 SV=1
Length = 655
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 139/287 (48%), Gaps = 18/287 (6%)
Query: 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 63
Y SGSADRTV+FWDLE F+L+G ET VR + F+ DG + CG +SL+V+ WEP
Sbjct: 202 YLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAILFSNDGGCIFCGGKDSLRVYGWEP 261
Query: 64 IRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNG-LS 122
+C D V VGW ++SDL + +L+G S QS + +VVD++R++ V +
Sbjct: 262 DQCFDTVPVGWGKVSDLAICNNQLIGVSSAQSNISSFVVDLTRVKMTGCAPQGPVPAEIP 321
Query: 123 ESKSSASG-NLSVLNENSAKASLGKLSVSQNSDPLVKETKSLGRLSVSQNSDPLLKETKT 181
S+ + +G +L + E + VS SD KE+++ + ++ + +
Sbjct: 322 ISQPAPTGTSLRRIYERPSTTCSKPNRVSPTSDDEEKESRA--EIQNPEDYKEIFQPKNA 379
Query: 182 LGRLSVSQNSEP-----------AKESKVLSSTGSVPGTPQRVNLNMGSKTSVVNSTAVV 230
+ R + +NSEP KE+ + P T + N + V ST +V
Sbjct: 380 ISR-TPPRNSEPFPAPPEDDISIVKEAVAPTPDVVTPATSNKKNTEQLQRPPVAASTPIV 438
Query: 231 SKRTSTRANTASNVPILNKSDIVPVIVPRTNTRFEQAVESRKDIDVI 277
+ S S P+++ + P+ + + F AV+S +V+
Sbjct: 439 CQEPSPVPAPQSKPPVISAARNEPIGLKAAD--FLPAVKSSSPTEVV 483
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 89/170 (52%)
Query: 452 VSDEDATADVMEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQKMADHTVLADVM 511
V D++A + + + H + SR+ L V W D+K +I + + D +V+ D++
Sbjct: 482 VVDDEAVSQIRKGHDTMCMVLTSRMRNLDTVRAVWSSGDIKTSIDSAVAINDLSVVVDLL 541
Query: 512 SIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISAST 571
+I+ +K + LD+C +LP + +L+S + ++ L +++ F +I ++A
Sbjct: 542 NIINQKASLWKLDLCMTVLPQIEKMLQSKYESYVQTGCISLKLILQRFLPLITDILAAPP 601
Query: 572 SVGVDIEAEQRIERCNRCFIELEKVKCCLPTLMRRGGSVAKSAQELNLAL 621
SVGVDI E+R+ +C C+ +L + + + + G + +EL+L +
Sbjct: 602 SVGVDISREERLSKCKLCYKQLRILSPLVKSKASQSGRYGSAFRELHLLM 651
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
G F SGS D +K WD+ + T VRCL F+PDG+ L
Sbjct: 117 GEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWL 162
>sp|Q6NVM2|KTNB1_XENTR Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus tropicalis
GN=katnb1 PE=2 SV=1
Length = 655
Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 125/266 (46%), Gaps = 18/266 (6%)
Query: 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 63
Y SGSADRTV+FWDLE F+LIG ET VR + F+ DG + CG ++L+V+ WEP
Sbjct: 202 YLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAILFSSDGGCIFCGGRDALRVYGWEP 261
Query: 64 IRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTI---GSVTRVNG 120
+C D V VGW ++ DL + +L+G S QS + +VVD++R++ G V
Sbjct: 262 DQCFDTVPVGWGKVCDLAICNKQLIGVSSAQSTISSFVVDLTRVKMTGCAPQGPVPAEMP 321
Query: 121 LSESKSSASGNLSVLNENSAKASLGKLSVSQNSDPLVKETKSLGRLSVSQNSDPLLKETK 180
+S+ + + + S S K VS SD KE+++ + ++ + +
Sbjct: 322 ISQPAPAGTSLRRIYERPSTTCSKPK-RVSPTSDDEEKESRA--EIQNPEDYKEIFQPKN 378
Query: 181 TLGRLSVSQNSEP-----------AKESKVLSSTGSVPGTPQRVNLNMGSKTSVVNSTAV 229
+ R + +NSEP KE P T + N + V ST +
Sbjct: 379 AISR-TPPRNSEPFPAPPEDDTSILKEPVAPIPDVVTPATSNKNNTEQLQRPPVAASTPI 437
Query: 230 VSKRTSTRANTASNVPILNKSDIVPV 255
V + S S P+++ + P+
Sbjct: 438 VCQEPSPVPAPQSKPPVISAARNEPI 463
Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 89/170 (52%)
Query: 452 VSDEDATADVMEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQKMADHTVLADVM 511
V D++A + + + H + SR+ L V W D+K +I + + D +V+ D++
Sbjct: 482 VVDDEAVSQIRKGHDTMCMVLTSRMRNLDTVRAVWSSGDIKTSIDSAVAINDLSVVVDLL 541
Query: 512 SIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISAST 571
+I+ +K + LD+C +LP + +L+S + ++ L +++ F +I ++A
Sbjct: 542 NIINQKASLWKLDLCLTVLPQIEKMLQSKYESYVQTGCISLKLILQRFLPLITDILAAPP 601
Query: 572 SVGVDIEAEQRIERCNRCFIELEKVKCCLPTLMRRGGSVAKSAQELNLAL 621
SVGVDI E+R+ +C C+ +L + + + + G + +EL+L +
Sbjct: 602 SVGVDISREERLSKCKLCYKQLRILSPLVKSKASQSGRYGSAFRELHLLM 651
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
G F SGS D +K WD+ + T VRCL F+PDG+ L
Sbjct: 117 GDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWL 162
>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens
GN=KATNB1 PE=1 SV=1
Length = 655
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Query: 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 63
Y SGS+DRT++FWDLE F+++ E VR + FNPDG L G +SL+V+ WEP
Sbjct: 202 YLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEP 261
Query: 64 IRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTR 117
RC D V V W +++DL + +L+G +++QS V +VVD++R+ G+V R
Sbjct: 262 ERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDLTRVT--RTGTVAR 313
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 91/174 (52%)
Query: 448 ETASVSDEDATADVMEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQKMADHTVL 507
+ A + DEDA + + + H + SR L V W D+K ++ + + D +V+
Sbjct: 478 QQAELVDEDAMSQIRKGHDTMCVVLTSRHKNLDTVRAVWTMGDIKTSVDSAVAINDLSVV 537
Query: 508 ADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAI 567
D+++IV +K + LD+C+ +LP + LL+S + ++ L +++ F +I +
Sbjct: 538 VDLLNIVNQKASLWKLDLCTTVLPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDML 597
Query: 568 SASTSVGVDIEAEQRIERCNRCFIELEKVKCCLPTLMRRGGSVAKSAQELNLAL 621
+A SVGVDI E+R+ +C C+ +L+ + + + G + +EL+L +
Sbjct: 598 AAPPSVGVDISREERLHKCRLCYKQLKSISGLVKSKSGLSGRHGSTFRELHLLM 651
Score = 40.0 bits (92), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
G F SGS D +K WD+ + + VRCL F+PDG+ L
Sbjct: 117 GEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWL 162
>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus
GN=Katnb1 PE=1 SV=1
Length = 658
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 66/101 (65%)
Query: 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 63
Y SGS+DRT++FWDLE F+++ E VR + FNPDG L G +SL+V+ WEP
Sbjct: 202 YLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEP 261
Query: 64 IRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 104
RC D V V W +++DL + +L+G +++QS V +VVD+
Sbjct: 262 ERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVVDL 302
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 91/174 (52%)
Query: 448 ETASVSDEDATADVMEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQKMADHTVL 507
+ A + DEDA + + + H + SR L V W D+K ++ + + D +V+
Sbjct: 481 QQAELVDEDAMSQIRKGHDTMFVVLTSRHKNLDTVRAVWTTGDIKTSVDSAVAINDLSVV 540
Query: 508 ADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAI 567
D+++IV +K + LD+C+ +LP + LL+S + ++ L +++ F +I +
Sbjct: 541 VDLLNIVNQKASLWKLDLCTTVLPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDIL 600
Query: 568 SASTSVGVDIEAEQRIERCNRCFIELEKVKCCLPTLMRRGGSVAKSAQELNLAL 621
+A SVGVDI E+R+ +C CF +L+ + + + G + +EL+L +
Sbjct: 601 AAPPSVGVDISREERLHKCRLCFKQLKSISGLVKSKSGLSGRHGSAFRELHLLM 654
Score = 40.0 bits (92), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
G F SGS D +K WD+ + + VRCL F+PDG+ L
Sbjct: 117 GEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWL 162
>sp|B8M7Q5|SCONB_TALSN Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Talaromyces stipitatus (strain ATCC 10500 / CBS
375.48 / QM 6759 / NRRL 1006) GN=sconB PE=3 SV=1
Length = 667
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
+GS D T+K WD+ET E + + TSG+RCL F+ D + + + +LKV++W C
Sbjct: 364 TGSYDMTIKIWDMETGEELRTLTGHTSGIRCLQFD-DTKLISGSIDRTLKVWNWRTGEC- 421
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103
+S H G ++G + S + +D
Sbjct: 422 ---------ISTYTGHLGGIIGLHFENSVLASGSID 448
>sp|B6Q4Z5|SCONB_PENMQ Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59
/ QM 7333) GN=sconB PE=3 SV=1
Length = 660
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 66
+GS D T+K WD+ET E + + TSG+RCL F D L+ G + +LKV++W C
Sbjct: 357 TGSYDTTIKIWDMETGEELRTLTGHTSGIRCLQF--DETKLISGSIDRTLKVWNWRTGEC 414
Query: 67 HDAVDVGWSRLSDLNVHEGKLLGCSYNQS 95
+S H G ++G + S
Sbjct: 415 ----------ISTYTGHLGGIIGLHFQNS 433
>sp|P74598|Y1491_SYNY3 Uncharacterized WD repeat-containing protein sll1491
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll1491 PE=4 SV=1
Length = 348
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 12 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFS 60
DRT+KFWD TFEL+G++ + + L PDGR L+ + +K ++
Sbjct: 210 DRTIKFWDANTFELLGTSPQQPGFINGLAVTPDGRKLVGAVRNFVKAWN 258
>sp|B8NGT5|SCONB_ASPFN Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 /
NRRL 3357 / JCM 12722 / SRRC 167) GN=sconB PE=3 SV=1
Length = 706
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
+GS D T+K WD ET E + + SG+RCL F+ D + + + SLKV++W C
Sbjct: 394 TGSYDATIKIWDTETGEELRTLRGHQSGIRCLQFD-DTKLISGSMDRSLKVWNWRTGEC- 451
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103
+S H G ++G ++ + + VD
Sbjct: 452 ---------ISTYTGHRGGVIGLHFDATILASASVD 478
>sp|Q2UFN8|SCONB_ASPOR Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=sconB PE=3 SV=1
Length = 705
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
+GS D T+K WD ET E + + SG+RCL F+ D + + + SLKV++W C
Sbjct: 393 TGSYDATIKIWDTETGEELRTLRGHQSGIRCLQFD-DTKLISGSMDRSLKVWNWRTGEC- 450
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103
+S H G ++G ++ + + VD
Sbjct: 451 ---------ISTYTGHRGGVIGLHFDATILASASVD 477
>sp|A1C7E4|SCONB_ASPCL Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=sconB PE=3 SV=1
Length = 700
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
+GS D T+K WD ET E + + SG+RCL F+ D + + + SLKV++W C
Sbjct: 386 TGSYDATIKIWDTETGEELRTLRGHESGIRCLQFD-DTKLISGSMDRSLKVWNWRTGEC- 443
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103
+S H G ++G ++ + + VD
Sbjct: 444 ---------ISTYTGHRGGVIGLHFDATILASASVD 470
>sp|Q0CY32|SCONB_ASPTN Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=sconB PE=3 SV=1
Length = 673
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
+GS D T+K WD ET E + + SG+RCL F+ D + + + SLKV++W C
Sbjct: 359 TGSYDATIKIWDTETGEELRTLYGHESGIRCLQFD-DTKLISGSMDRSLKVWNWRTGEC- 416
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103
+S H G ++G ++ + + VD
Sbjct: 417 ---------ISTYTGHRGGVIGLHFDATILASASVD 443
>sp|Q4X0A9|SCONB_ASPFU Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=sconB PE=3 SV=1
Length = 696
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
+GS D T+K WD ET E + + SG+RCL F+ D + + + +LKV++W C
Sbjct: 382 TGSYDATIKIWDTETGEELRTLKGHQSGIRCLQFD-DTKLISGSMDHTLKVWNWRTGEC- 439
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103
+S + H G ++G ++ + + VD
Sbjct: 440 ---------ISTYSGHRGGVVGLHFDATILASGSVD 466
>sp|B0XTS1|SCONB_ASPFC Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 /
FGSC A1163) GN=sconB PE=3 SV=1
Length = 696
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
+GS D T+K WD ET E + + SG+RCL F+ D + + + +LKV++W C
Sbjct: 382 TGSYDATIKIWDTETGEELRTLKGHQSGIRCLQFD-DTKLISGSMDHTLKVWNWRTGEC- 439
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103
+S + H G ++G ++ + + VD
Sbjct: 440 ---------ISTYSGHRGGVVGLHFDATILASGSVD 466
>sp|A1DHW6|SCONB_NEOFI Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=sconB PE=3 SV=1
Length = 689
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
+GS D T+K WD ET E + + SG+RCL F+ D + + + +LKV++W C
Sbjct: 375 TGSYDATIKIWDTETGEELRTLKGHRSGIRCLQFD-DTKLISGSMDHTLKVWNWRTGEC- 432
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103
+S + H G ++G ++ + + VD
Sbjct: 433 ---------ISTYSGHRGGVVGLHFDATILASGSVD 459
>sp|C4Q0P6|LIS1_SCHMA Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3
SV=1
Length = 417
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 32/114 (28%)
Query: 8 SGSADRTVKFWDLET----FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 62
SGS DRT++FWD+ F LIG + VR L F+P GR LL + +++V+ +
Sbjct: 320 SGSRDRTIRFWDVNIGICLFVLIG----HDNWVRQLVFHPHGRLLLSASDDKTIRVWDLK 375
Query: 63 PIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTI-GSV 115
RCH LN H + +D++R+ PY I GSV
Sbjct: 376 NRRCHKT----------LNAHSHFVTS------------LDVNRLAPYAITGSV 407
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSWEPIRC 66
S S D ++K WD ET E + T V+ + F+P G+ L C +K++ + +C
Sbjct: 139 SASEDASIKVWDYETGEFEHTLKGHTDSVQDVAFDPSGKFLASCSADMQVKLWDFTIYQC 198
>sp|Q00659|SCONB_EMENI Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=sconB PE=3 SV=2
Length = 678
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
+GS D T+K WD ET E + + SG+RCL F+ D + + + ++KV++W C
Sbjct: 364 TGSYDTTIKIWDTETGEELRTLRGHESGIRCLQFD-DTKLISGSMDRTIKVWNWRTGEC- 421
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103
+S H G ++G ++ S + VD
Sbjct: 422 ---------ISTYTGHRGGVIGLHFDASILASGSVD 448
>sp|A8NEG8|LIS1_COPC7 Nuclear distribution protein PAC1 OS=Coprinopsis cinerea (strain
Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=PAC1
PE=3 SV=3
Length = 434
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL 49
G F SG+ D+TVK WD +T ++I + + VR L F+P G+ LL
Sbjct: 309 GLFLASGARDKTVKLWDTQTGQMIRNLAGHDNWVRALAFHPSGKYLL 355
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1
Length = 1258
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLC-GLHESLKVFSWEPIRC 66
SGS DRT+K WD +T I + T+ V + F+PDG+TL C L +S+++++ +C
Sbjct: 869 SGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQC 928
Query: 67 HDA 69
A
Sbjct: 929 LKA 931
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
S S D+T+K WD++ + + T VRC+ F+PDG TL
Sbjct: 743 SASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTL 783
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL-LCGLHESLKVFSWEPIRC 66
S SAD++V+ WD T +G ++ V F+P+G + C +++K++ W+ +C
Sbjct: 1079 SASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKC 1138
Query: 67 HDAVDVGWSRLSDLNVH-EGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSES 124
+ + + D+ +GK+L + + V +W V+ + IG V+ ++ S
Sbjct: 1139 LKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFS 1197
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 48
SGS D+TVK WD +T + I S T + + F+PD +TL
Sbjct: 953 SGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTL 993
Score = 36.6 bits (83), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 51
SGS DRT+K W+ T E + + T+ V + ++PD + L+ G
Sbjct: 827 SGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSG 870
>sp|Q5RD06|POC1B_PONAB POC1 centriolar protein homolog B OS=Pongo abelii GN=POC1B PE=2
SV=1
Length = 451
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 119/284 (41%), Gaps = 47/284 (16%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F + S D+++K W + + S T VRC F+PDGR ++ C +++K++
Sbjct: 114 GQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDT 173
Query: 62 EPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVN 119
+C + VG++ D N G + + + V VW V RVN
Sbjct: 174 TNKQCVNNFSDSVGFANFVDFNP-SGTCIASAGSDQTVKVWDV--------------RVN 218
Query: 120 GLSESKSSASGNLSVLNENSAKASLGKLSVSQNSDPLVKETKSL-GRLSVSQNSDPLLKE 178
L + SG ++ ++ + + L V+ +SD +K L GRL + L
Sbjct: 219 KLLQHYQVHSGGVNCISFHPSDNYL----VTASSDGTLKILDLLEGRLIYT-----LQGH 269
Query: 179 TKTLGRLSVSQNSEPAKESKVLSSTGSVPGTPQRVNLNMGSKTSVVNSTAVVSKRTSTRA 238
T + +S S+ E L ++G G +V L + + ++KR R
Sbjct: 270 TGPVFTVSFSKGGE-------LFASG---GADTQVLLWRTNFDEL--HCKGLNKRNLKRL 317
Query: 239 NTASNVPILNKSDIVPVIVPRTNTRFEQAVESRKDIDVIGRTMP 282
+ S +L+ I PRT E+ VE+ + + GRT+P
Sbjct: 318 HFDSPPHLLD-------IYPRTPHPHEEKVETVETTETSGRTLP 354
>sp|B6GZA1|SCONB_PENCW Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075
/ Wisconsin 54-1255) GN=sconB PE=3 SV=1
Length = 673
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 7 FSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRC 66
+GS D TVK WD +T E + + +GVRCL F+ D + + L S++V++W C
Sbjct: 357 MTGSYDATVKIWDTDTGEELRTLKGHVAGVRCLQFD-DTKLITGSLDRSIRVWNWRTGEC 415
>sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1
SV=1
Length = 478
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F + S D+++K W + + S T VRC F+PDGR ++ C +++K++
Sbjct: 114 GQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDT 173
Query: 62 EPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR-IEPYTIGSVTRV 118
+C + VG++ D N G + + + V VW V +++ ++ Y + S V
Sbjct: 174 TNKQCVNNFSDSVGFANFVDFNP-SGTCIASAGSDQTVKVWDVRVNKLLQHYQVHS-GGV 231
Query: 119 NGLSESKS-------SASGNLSVLN 136
N +S S S+ G L +L+
Sbjct: 232 NCISFHPSGNYLITASSDGTLKILD 256
>sp|D3ZW91|POC1B_RAT POC1 centriolar protein homolog B OS=Rattus norvegicus GN=Poc1b
PE=2 SV=1
Length = 477
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F + S D+++K W + + S T VRC F+PDGR ++ C +++K++
Sbjct: 114 GQFLVTASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDT 173
Query: 62 EPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR-IEPYTIGSVTRV 118
+C + VG++ D + + G + + + V +W + ++R ++ Y + S V
Sbjct: 174 TSKQCVNNFSDSVGFANFVDFSPN-GTCIASAGSDHAVRIWDIRMNRLLQHYQVHSCG-V 231
Query: 119 NGLSESKS-------SASGNLSVLN 136
N LS S S+ G + +L+
Sbjct: 232 NCLSFHPSGNSLVTASSDGTVKILD 256
>sp|Q01277|SCONB_NEUCR Probable E3 ubiquitin ligase complex SCF subunit scon-2
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=scon-2 PE=1 SV=1
Length = 650
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRC 66
+GS D T+K W++ET E I + T+G+R L F+ D + + L ++KV++W C
Sbjct: 309 TGSYDTTIKIWNIETEECIRTLVGHTAGIRALQFD-DSKLISGSLDHTIKVWNWHTGEC 366
>sp|Q803D2|LIS1B_DANRE Lissencephaly-1 homolog B OS=Danio rerio GN=pafah1b1b PE=2 SV=3
Length = 410
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F SGS D+T+K WD+ T + + + VR + F+P GR ++ C ++L+++ +
Sbjct: 308 GPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLFHPGGRFVVSCADDKTLRIWDY 367
Query: 62 EPIRCHDAVDVGWSRLSDLNVHEG 85
+ RC + ++ L+ H+
Sbjct: 368 KNKRCMKTLSAHEHFVTSLDFHKA 391
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 6/156 (3%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC 66
S SAD T+K WD + FE I + V + P+G ++ + ++K++ C
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTMKMWEVATGYC 226
Query: 67 HDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSES 124
W R+ N +G LL N V VWVV + V +S +
Sbjct: 227 VKTFTGHREWVRMVRPN-QDGTLLASCSNDQTVRVWVVATKECKAELREHEHVVECISWA 285
Query: 125 KSSASGNLS--VLNENSAKASLGKLSVSQNSDPLVK 158
SA +S +EN G +S + D +K
Sbjct: 286 PESAHPTISEATGSENKKSGKPGPFLLSGSRDKTIK 321
>sp|A2CEH0|POC1B_DANRE POC1 centriolar protein homolog B OS=Danio rerio GN=poc1b PE=2 SV=1
Length = 490
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 51
S AD T+K WD+ T +LI +GV C +F+P G L+ G
Sbjct: 203 SSGADNTIKIWDIRTNKLIQHYKVHNAGVNCFSFHPSGNYLISG 246
Score = 39.7 bits (91), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSWEPIRC 66
+ S D++VK W +E + + S T+ VRC F+PDGR + CG +++++ +C
Sbjct: 119 TASDDKSVKVWGVERKKFLYSLNRHTNWVRCARFSPDGRLIASCGDDRTVRLWDTSSHQC 178
Query: 67 HDAV-DVGWS-RLSDLNVHEGKLLGCSYNQSCVGVWVVDISR-IEPYTI 112
+ D G S D N G + S + + +W + ++ I+ Y +
Sbjct: 179 INIFTDYGGSATFVDFNS-SGTCIASSGADNTIKIWDIRTNKLIQHYKV 226
>sp|A8XZJ9|LIS1_CAEBR Lissencephaly-1 homolog OS=Caenorhabditis briggsae GN=lis-1 PE=3
SV=2
Length = 390
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFS 60
S + FSGS DR++K W++ T E+I + + VR L F+P G+ L+ + ++++
Sbjct: 287 STHILFSGSRDRSIKAWNISTGEVIFTLSAHENWVRGLAFHPKGKYLVSVADDKMMRIWE 346
Query: 61 WEPIRCHDAVDVGWSRLSDLNVHEGK--LLGCSYNQSCVGVW 100
RC A++ +S + H+ ++ S + SC VW
Sbjct: 347 LSAQRCMKAIEAHEHFVSTVAFHQTNPYVITGSVDMSC-KVW 387
>sp|C5FP68|SCONB_ARTOC Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480)
GN=sconB PE=3 SV=1
Length = 674
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
+GS D T+K WD+ET + I + S +RCL F+ D + + L ++KV+SW C
Sbjct: 353 TGSYDATIKIWDIETGKEIRTLRGHESTIRCLQFD-DTKLISGSLDRTIKVWSWRSGEC- 410
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYN 93
+S H+G +L ++
Sbjct: 411 ---------ISTYTGHQGGVLCLHFD 427
Score = 33.1 bits (74), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 62
SGS DRT+K W + E I + GV CL F D TL G + ++K+++++
Sbjct: 393 SGSLDRTIKVWSWRSGECISTYTGHQGGVLCLHF--DSTTLASGSKDNTIKIWNFQ 446
>sp|A2QCU8|SCONB_ASPNC Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=sconB PE=3 SV=1
Length = 670
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
+GS D T+K WD +T + I + SG+RCL F+ D + + + S+KV++W C
Sbjct: 356 TGSYDATIKIWDTDTGQEIRTLRGHESGIRCLQFD-DTKLISGSMDGSVKVWNWRTGDC- 413
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103
+S H G ++G ++ + + VD
Sbjct: 414 ---------ISTYTGHRGGVIGLHFDATILASASVD 440
>sp|Q9NDC9|LIS1_CAEEL Lissencephaly-1 homolog OS=Caenorhabditis elegans GN=lis-1 PE=2
SV=1
Length = 404
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFS 60
S + FSGS DR++K W++ T +++ + + VR L F+P G+ L+ ++L+V+
Sbjct: 301 STHILFSGSRDRSIKAWNINTGDVLFTLLAHENWVRGLAFHPKGKYLISVADDKTLRVWE 360
Query: 61 WEPIRCHDAVDVGWSRLSDLNVHE 84
RC A++ +S + H+
Sbjct: 361 LSAQRCMKAIEAHEHFVSTVAFHQ 384
>sp|Q8BHD1|POC1B_MOUSE POC1 centriolar protein homolog B OS=Mus musculus GN=Poc1b PE=1
SV=1
Length = 476
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G + S D+++K W + + S T VRC F+PDGR ++ C +++K++
Sbjct: 114 GQLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDT 173
Query: 62 EPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR-IEPYTIGSVTRV 118
+C + VG++ D N + G + + + V +W + +++ ++ Y + S V
Sbjct: 174 TNKQCVNNFSDSVGFANFVDFNPN-GTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG-V 231
Query: 119 NGLS 122
N LS
Sbjct: 232 NCLS 235
Score = 36.6 bits (83), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL 49
S +D VK WD+ +L+ + GV CL+F+P G +L+
Sbjct: 203 SAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLV 244
>sp|B5X3C4|LIS1B_SALSA Lissencephaly-1 homolog B OS=Salmo salar GN=pafah1b1-2 PE=2 SV=1
Length = 410
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFS 60
SG F SGS D+T+K WD+ T + + + VR + +P GR ++ C ++L+++
Sbjct: 307 SGPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLVHPGGRFIVSCADDKTLRIWD 366
Query: 61 WEPIRCHDAVDVGWSRLSDLNVHE 84
++ RC + ++ L++H+
Sbjct: 367 YKNKRCMKTLCAHEHFVTSLDMHQ 390
>sp|D4D8P3|SCONB_TRIVH Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Trichophyton verrucosum (strain HKI 0517) GN=sconB
PE=3 SV=1
Length = 663
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
+GS D T+K WD+ET + I + S +RCL F+ D + + L ++KV++W C
Sbjct: 337 TGSYDATIKIWDIETGKEIRTLRGHESTIRCLQFD-DTKLISGSLDRTIKVWNWRSGEC- 394
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYN 93
+S H+G +L ++
Sbjct: 395 ---------ISTYTGHQGGVLCLHFD 411
Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 51
SGS DRT+K W+ + E I + GV CL F D TL G
Sbjct: 377 SGSLDRTIKVWNWRSGECISTYTGHQGGVLCLHF--DSTTLASG 418
>sp|D4AM37|SCONB_ARTBC Probable E3 ubiquitin ligase complex SCF subunit sconB
OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS
112371) GN=sconB PE=3 SV=1
Length = 663
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 67
+GS D T+K WD+ET + I + S +RCL F+ D + + L ++KV++W C
Sbjct: 337 TGSYDATIKIWDIETGKEIRTLRGHESTIRCLQFD-DTKLISGSLDRTIKVWNWRSGEC- 394
Query: 68 DAVDVGWSRLSDLNVHEGKLLGCSYN 93
+S H+G +L ++
Sbjct: 395 ---------ISTYTGHQGGVLCLHFD 411
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 51
SGS DRT+K W+ + E I + GV CL F D TL G
Sbjct: 377 SGSLDRTIKVWNWRSGECISTYTGHQGGVLCLHF--DSTTLASG 418
>sp|Q6NZH4|LIS1_XENTR Lissencephaly-1 homolog OS=Xenopus tropicalis GN=pafah1b1 PE=2 SV=3
Length = 410
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F SGS D+T+K WD+ + + + VR + F+P G+ +L C ++++++ +
Sbjct: 308 GPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDKTIRIWDY 367
Query: 62 EPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQS 95
+ RC + LN HE + ++++
Sbjct: 368 KNKRC----------MKTLNAHEHFVTSLDFHKT 391
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60
SG S SAD T+K WD + FE I + V + P+G ++ + ++K++
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
Query: 61 WEPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 102
+ C W R+ N +G L+ N V VWVV
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 263
>sp|Q90ZL4|LIS1_XENLA Lissencephaly-1 homolog OS=Xenopus laevis GN=pafah1b1 PE=2 SV=3
Length = 410
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F SGS D+T+K WD+ + + + VR + F+P G+ +L C ++++++ +
Sbjct: 308 GPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDKTIRIWDY 367
Query: 62 EPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQS 95
+ RC + LN HE + ++++
Sbjct: 368 KNKRC----------MKTLNAHEHFVTSLDFHKT 391
Score = 34.3 bits (77), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60
SG S SAD T+K WD + FE + + V + P+G ++ + ++K++
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECLRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
Query: 61 WEPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 102
+ C W R+ N +G L+ N V VWVV
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 263
>sp|Q4RJN5|LIS1_TETNG Lissencephaly-1 homolog OS=Tetraodon nigroviridis GN=pafah1b1 PE=3
SV=1
Length = 410
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F SGS D+T+K WD+ T + + + VR + F+P G+ ++ C ++L+++ +
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHPGGKFIVTCADDKTLRIWDY 367
Query: 62 EPIRC 66
+ RC
Sbjct: 368 KNKRC 372
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVF 59
++G S SAD T+K WD ++FE I + V + P+G ++ + ++K++
Sbjct: 160 LTGKLLASCSADMTIKLWDFQSFECIRTMHGHDHNVSSVAIMPNGDHIISASRDKTMKMW 219
Query: 60 SWEPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 102
C W R+ N +G L+ N V VWVV
Sbjct: 220 EVATGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 263
>sp|C3XVT5|LIS1_BRAFL Lissencephaly-1 homolog OS=Branchiostoma floridae
GN=BRAFLDRAFT_59218 PE=3 SV=1
Length = 406
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 4/154 (2%)
Query: 8 SGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC 66
S SAD T+K WD +TFE I + V + F P+G L+ + ++K++ C
Sbjct: 165 SCSADMTIKLWDFQTFENIKTMHGHDHNVSSVHFMPNGDFLISASRDKTIKMWELATGYC 224
Query: 67 HDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSES 124
W R +N +G LL N V VWVV + V ++ +
Sbjct: 225 VKTFTGHREWVRTVRVN-QDGSLLASCSNDQTVRVWVVANKECKAELREHEHVVECIAWA 283
Query: 125 KSSASGNLSVLNENSAKASLGKLSVSQNSDPLVK 158
S +G++S + K G +S + D +K
Sbjct: 284 PESCNGHVSEVMGAEKKGRSGPFLLSGSRDKTIK 317
Score = 39.3 bits (90), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60
SG F SGS D+T+K WD+ T I + + VR + ++P G+ ++ + +++V+
Sbjct: 303 SGPFLLSGSRDKTIKMWDISTGVCIMTLVGHDNWVRGVVWHPGGKYIISASDDKTIRVWD 362
Query: 61 WEPIRCHDAVDVGWSRLSDLNVH 83
++ RC ++ + ++ H
Sbjct: 363 YKNKRCQKTLEAHQHFCTSIDFH 385
>sp|P63004|LIS1_RAT Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2
Length = 410
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F SGS D+T+K WD+ T + + + VR + F+ G+ +L C ++L+V+ +
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 62 EPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQS 95
+ RC + LN HE + ++++
Sbjct: 368 KNKRC----------MKTLNAHEHFVTSLDFHKT 391
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60
SG S SAD T+K WD + FE I + V + P+G ++ + ++K++
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
Query: 61 WEPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 102
+ C W R+ N +G L+ N V VWVV
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 263
>sp|P63005|LIS1_MOUSE Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus
musculus GN=Pafah1b1 PE=1 SV=2
Length = 410
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F SGS D+T+K WD+ T + + + VR + F+ G+ +L C ++L+V+ +
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 62 EPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQS 95
+ RC + LN HE + ++++
Sbjct: 368 KNKRC----------MKTLNAHEHFVTSLDFHKT 391
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60
SG S SAD T+K WD + FE I + V + P+G ++ + ++K++
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
Query: 61 WEPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 102
+ C W R+ N +G L+ N V VWVV
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 263
>sp|B0LSW3|LIS1_FELCA Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Felis catus GN=PAFAH1B1 PE=2 SV=1
Length = 410
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F SGS D+T+K WD+ T + + + VR + F+ G+ +L C ++L+V+ +
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 62 EPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQS 95
+ RC + LN HE + ++++
Sbjct: 368 KNKRC----------MKTLNAHEHFVTSLDFHKT 391
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60
SG S SAD T+K WD + FE I + V + P+G ++ + ++K++
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
Query: 61 WEPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 102
+ C W R+ N +G L+ N V VWVV
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 263
>sp|P43033|LIS1_BOVIN Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos
taurus GN=PAFAH1B1 PE=1 SV=2
Length = 410
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F SGS D+T+K WD+ T + + + VR + F+ G+ +L C ++L+V+ +
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 62 EPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQS 95
+ RC + LN HE + ++++
Sbjct: 368 KNKRC----------MKTLNAHEHFVTSLDFHKT 391
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60
SG S SAD T+K WD + FE I + V + P+G ++ + ++K++
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
Query: 61 WEPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 102
+ C W R+ N +G L+ N V VWVV
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 263
>sp|Q9GL51|LIS1_PIG Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus
scrofa GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F SGS D+T+K WD+ T + + + VR + F+ G+ +L C ++L+V+ +
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 62 EPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQS 95
+ RC + LN HE + ++++
Sbjct: 368 KNKRC----------MKTLNAHEHFVTSLDFHKT 391
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60
SG S SAD T+K WD + FE I + V + P+G ++ + ++K++
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWE 220
Query: 61 WEPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 102
+ C W R+ N +G L+ N V VWVV
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 263
>sp|Q8HXX0|LIS1_MACFA Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F SGS D+T+K WD+ T + + + VR + F+ G+ +L C ++L+V+ +
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 62 EPIRCHDAVDVGWSRLSDLNVHE 84
+ RC ++ ++ L+ H+
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHK 390
Score = 35.8 bits (81), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60
SG S SAD T+K WD + FE I + V + P+G L+ + ++K++
Sbjct: 161 SGKLLTSCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWE 220
Query: 61 WEPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 102
+ C W R+ N +G L+ N V VWVV
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 263
>sp|P43034|LIS1_HUMAN Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo
sapiens GN=PAFAH1B1 PE=1 SV=2
Length = 410
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F SGS D+T+K WD+ T + + + VR + F+ G+ +L C ++L+V+ +
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 62 EPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQS 95
+ RC + LN HE + ++++
Sbjct: 368 KNKRC----------MKTLNAHEHFVTSLDFHKT 391
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60
SG S SAD T+K WD + FE I + V + P+G ++ + ++K++
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
Query: 61 WEPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 102
+ C W R+ N +G L+ N V VWVV
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 263
>sp|Q5NVD0|PRP4_PONAB U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4
PE=2 SV=1
Length = 521
Score = 40.8 bits (94), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 23/115 (20%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP-DGRTLLCGLHESLKVFS 60
+GY +GS D T K WDL + + + V + F P G LL G +++
Sbjct: 417 NGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIW 476
Query: 61 WEPIRCHDAVDVGWSRLSDLNVHEGKLLG------------CSYNQSCVGVWVVD 103
P GWS L L HEGK++G CSY+++ +W+ +
Sbjct: 477 THP---------GWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRT-FKLWMAE 521
>sp|Q5REG7|LIS1_PONAB Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKVFSW 61
G F SGS D+T+K WD+ T + + + VR + F+ G+ +L C ++L+V+ +
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 62 EPIRCHDAVDVGWSRLSDLNVHE 84
+ RC ++ ++ L+ H+
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHK 390
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60
SG S SAD T+K WD + FE I + V + P+G ++ + ++K++
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220
Query: 61 WEPIRCHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 102
+ C W R+ N +G L+ N V VWVV
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 263
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,668,072
Number of Sequences: 539616
Number of extensions: 8151684
Number of successful extensions: 23967
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 325
Number of HSP's that attempted gapping in prelim test: 22294
Number of HSP's gapped (non-prelim): 1705
length of query: 625
length of database: 191,569,459
effective HSP length: 124
effective length of query: 501
effective length of database: 124,657,075
effective search space: 62453194575
effective search space used: 62453194575
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)