Query 006939
Match_columns 625
No_of_seqs 316 out of 1937
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 16:39:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0267 Microtubule severing p 100.0 3.7E-67 8.1E-72 570.4 37.2 611 1-622 122-808 (825)
2 PF13925 Katanin_con80: con80 100.0 8.5E-47 1.8E-51 362.6 18.6 161 462-622 1-164 (164)
3 KOG0272 U4/U6 small nuclear ri 99.7 1.5E-16 3.3E-21 167.0 8.0 121 1-128 271-393 (459)
4 KOG0272 U4/U6 small nuclear ri 99.6 3.9E-15 8.5E-20 156.4 10.1 125 1-132 313-440 (459)
5 KOG0271 Notchless-like WD40 re 99.6 9.7E-15 2.1E-19 151.9 10.6 122 1-129 125-254 (480)
6 KOG0285 Pleiotropic regulator 99.6 1.4E-14 3.1E-19 149.6 11.1 124 1-131 161-286 (460)
7 KOG0263 Transcription initiati 99.5 3.1E-14 6.7E-19 159.2 10.9 103 1-103 545-649 (707)
8 KOG0319 WD40-repeat-containing 99.5 5.9E-14 1.3E-18 155.7 12.5 122 1-129 473-596 (775)
9 KOG0263 Transcription initiati 99.5 4.3E-14 9.4E-19 158.0 9.9 119 1-126 503-623 (707)
10 KOG0279 G protein beta subunit 99.5 2.4E-13 5.1E-18 137.1 13.1 122 1-129 73-199 (315)
11 KOG0266 WD40 repeat-containing 99.5 3.7E-13 7.9E-18 149.6 15.9 103 1-103 213-318 (456)
12 KOG0267 Microtubule severing p 99.5 8.7E-12 1.9E-16 138.4 23.2 102 2-103 81-184 (825)
13 PTZ00421 coronin; Provisional 99.4 2.6E-12 5.7E-17 143.8 17.3 116 2-124 87-212 (493)
14 KOG0286 G-protein beta subunit 99.4 1.6E-12 3.5E-17 131.8 13.6 123 2-131 198-324 (343)
15 KOG0271 Notchless-like WD40 re 99.4 6.1E-13 1.3E-17 138.7 10.4 122 1-129 167-295 (480)
16 KOG0266 WD40 repeat-containing 99.4 2.4E-12 5.1E-17 143.2 14.6 122 1-129 169-295 (456)
17 KOG0285 Pleiotropic regulator 99.4 1.9E-12 4E-17 134.2 10.6 123 3-132 205-329 (460)
18 KOG0281 Beta-TrCP (transducin 99.4 4.4E-13 9.6E-18 138.2 5.7 123 2-127 329-454 (499)
19 KOG0295 WD40 repeat-containing 99.4 5.3E-12 1.2E-16 131.1 12.3 99 3-101 304-404 (406)
20 KOG0286 G-protein beta subunit 99.3 7E-12 1.5E-16 127.2 12.3 102 2-103 155-259 (343)
21 KOG0291 WD40-repeat-containing 99.3 6.6E-12 1.4E-16 139.8 13.2 103 1-103 360-508 (893)
22 KOG0292 Vesicle coat complex C 99.3 5.3E-12 1.2E-16 142.3 11.2 103 1-103 61-165 (1202)
23 PTZ00420 coronin; Provisional 99.3 4.8E-11 1E-15 135.1 17.5 115 3-125 87-212 (568)
24 KOG0284 Polyadenylation factor 99.3 4.6E-12 1E-16 133.1 8.3 121 1-128 190-312 (464)
25 KOG0273 Beta-transducin family 99.3 2E-11 4.4E-16 130.2 11.9 103 1-103 369-482 (524)
26 KOG0281 Beta-TrCP (transducin 99.3 4.6E-12 1E-16 130.8 6.4 119 2-129 206-367 (499)
27 KOG0265 U5 snRNP-specific prot 99.3 4E-11 8.6E-16 122.2 12.8 103 1-103 57-163 (338)
28 KOG0274 Cdc4 and related F-box 99.3 4.5E-11 9.7E-16 134.8 14.5 117 3-129 261-378 (537)
29 KOG0292 Vesicle coat complex C 99.3 1.4E-11 3.1E-16 138.9 10.1 125 1-132 19-145 (1202)
30 KOG0315 G-protein beta subunit 99.3 3.8E-11 8.2E-16 119.7 11.5 100 4-103 11-113 (311)
31 KOG0276 Vesicle coat complex C 99.2 5.9E-11 1.3E-15 130.1 13.6 119 4-129 68-190 (794)
32 KOG0282 mRNA splicing factor [ 99.2 1.5E-11 3.2E-16 131.6 8.7 101 2-103 226-330 (503)
33 KOG0295 WD40 repeat-containing 99.2 4.1E-11 9E-16 124.6 11.7 126 1-133 203-345 (406)
34 KOG0316 Conserved WD40 repeat- 99.2 4.8E-11 1E-15 118.2 11.2 108 2-109 28-137 (307)
35 KOG0275 Conserved WD40 repeat- 99.2 4E-12 8.7E-17 130.1 3.0 102 2-103 274-378 (508)
36 KOG0279 G protein beta subunit 99.2 6.8E-11 1.5E-15 119.5 11.7 100 3-103 162-262 (315)
37 KOG0276 Vesicle coat complex C 99.2 4.4E-11 9.6E-16 131.0 11.2 122 1-129 107-234 (794)
38 PLN00181 protein SPA1-RELATED; 99.2 4.2E-10 9.2E-15 133.3 17.6 119 2-127 544-666 (793)
39 KOG0645 WD40 repeat protein [G 99.2 3.8E-10 8.3E-15 113.8 14.5 123 3-129 27-157 (312)
40 KOG0318 WD40 repeat stress pro 99.2 4.9E-10 1.1E-14 121.2 14.8 103 1-103 200-350 (603)
41 PTZ00421 coronin; Provisional 99.1 5.7E-10 1.2E-14 125.1 16.1 101 3-103 138-245 (493)
42 KOG0319 WD40-repeat-containing 99.1 1.9E-10 4.1E-15 128.3 10.6 100 1-100 515-616 (775)
43 KOG0315 G-protein beta subunit 99.1 3.8E-10 8.3E-15 112.7 11.5 101 1-103 50-154 (311)
44 KOG0265 U5 snRNP-specific prot 99.1 3E-10 6.4E-15 115.9 10.9 121 1-129 100-223 (338)
45 KOG0645 WD40 repeat protein [G 99.1 1.2E-09 2.5E-14 110.3 14.8 124 1-128 71-201 (312)
46 KOG0283 WD40 repeat-containing 99.1 5.3E-10 1.2E-14 126.4 13.0 99 3-103 380-481 (712)
47 KOG0282 mRNA splicing factor [ 99.1 3E-10 6.6E-15 121.7 9.8 102 1-103 268-372 (503)
48 KOG0289 mRNA splicing factor [ 99.1 7.3E-10 1.6E-14 117.5 12.4 103 1-103 313-419 (506)
49 KOG0306 WD40-repeat-containing 99.1 4.6E-10 9.9E-15 125.4 11.4 122 1-129 518-641 (888)
50 KOG0277 Peroxisomal targeting 99.1 1.1E-09 2.3E-14 109.8 12.5 119 2-127 116-239 (311)
51 KOG0293 WD40 repeat-containing 99.1 5.3E-10 1.2E-14 117.9 10.7 117 1-117 234-356 (519)
52 cd00200 WD40 WD40 domain, foun 99.1 4.1E-09 8.8E-14 103.6 16.2 103 1-103 61-165 (289)
53 cd00200 WD40 WD40 domain, foun 99.1 4.1E-09 9E-14 103.6 15.9 103 1-103 19-123 (289)
54 KOG0313 Microtubule binding pr 99.0 1.1E-09 2.4E-14 114.6 11.7 123 1-129 203-352 (423)
55 KOG0284 Polyadenylation factor 99.0 3.3E-10 7.2E-15 119.3 7.8 123 1-123 232-361 (464)
56 PLN00181 protein SPA1-RELATED; 99.0 3.6E-09 7.8E-14 125.4 17.2 124 2-127 587-713 (793)
57 PTZ00420 coronin; Provisional 99.0 3.3E-09 7.2E-14 120.4 16.1 102 1-103 135-248 (568)
58 KOG0302 Ribosome Assembly prot 99.0 1.4E-09 3.1E-14 113.8 11.9 102 3-105 270-380 (440)
59 KOG0275 Conserved WD40 repeat- 99.0 1.2E-10 2.5E-15 119.5 3.8 122 1-129 223-355 (508)
60 KOG0291 WD40-repeat-containing 99.0 2.7E-09 5.8E-14 119.4 14.1 102 2-103 318-422 (893)
61 KOG0274 Cdc4 and related F-box 99.0 2.9E-09 6.3E-14 120.3 14.6 121 3-131 218-340 (537)
62 KOG0294 WD40 repeat-containing 99.0 1.2E-09 2.6E-14 112.2 10.4 102 2-103 52-157 (362)
63 KOG0273 Beta-transducin family 99.0 2.7E-09 5.9E-14 114.2 13.0 122 2-131 246-368 (524)
64 KOG0269 WD40 repeat-containing 99.0 6.4E-10 1.4E-14 124.7 8.6 101 4-104 147-251 (839)
65 KOG0270 WD40 repeat-containing 99.0 5.1E-09 1.1E-13 111.5 14.5 127 3-136 256-387 (463)
66 KOG0640 mRNA cleavage stimulat 99.0 2E-09 4.3E-14 110.3 11.0 103 1-103 226-335 (430)
67 KOG0308 Conserved WD40 repeat- 99.0 2.5E-09 5.4E-14 118.1 12.1 122 1-129 128-262 (735)
68 KOG0316 Conserved WD40 repeat- 99.0 2.7E-09 5.8E-14 106.0 11.1 102 2-104 70-174 (307)
69 KOG0647 mRNA export protein (c 99.0 2.8E-09 6E-14 109.0 10.8 101 2-103 39-145 (347)
70 KOG0289 mRNA splicing factor [ 99.0 2.8E-09 6.2E-14 113.1 11.2 101 1-101 357-460 (506)
71 KOG0310 Conserved WD40 repeat- 99.0 5E-09 1.1E-13 112.7 12.6 100 2-103 122-225 (487)
72 KOG0283 WD40 repeat-containing 99.0 1.8E-09 3.9E-14 122.2 9.6 101 1-103 277-440 (712)
73 KOG0264 Nucleosome remodeling 98.9 5.5E-09 1.2E-13 111.5 12.5 131 2-132 239-383 (422)
74 KOG0306 WD40-repeat-containing 98.9 2E-09 4.4E-14 120.3 8.9 103 1-103 560-664 (888)
75 KOG0313 Microtubule binding pr 98.9 5.4E-09 1.2E-13 109.6 11.4 121 2-129 270-396 (423)
76 KOG0303 Actin-binding protein 98.9 5.1E-09 1.1E-13 110.2 10.3 116 2-125 93-218 (472)
77 KOG0973 Histone transcription 98.9 7.5E-09 1.6E-13 120.0 12.6 103 1-103 79-201 (942)
78 KOG0300 WD40 repeat-containing 98.9 4.1E-09 9E-14 108.1 9.3 102 2-103 283-386 (481)
79 KOG0310 Conserved WD40 repeat- 98.9 6E-09 1.3E-13 112.0 10.0 105 1-105 78-186 (487)
80 KOG0641 WD40 repeat protein [G 98.9 1.4E-08 3.1E-13 100.2 11.8 102 2-103 193-303 (350)
81 KOG0643 Translation initiation 98.9 2.7E-08 5.8E-13 100.5 13.8 101 2-103 21-128 (327)
82 KOG0300 WD40 repeat-containing 98.9 6.8E-09 1.5E-13 106.6 9.7 120 4-129 161-364 (481)
83 KOG0640 mRNA cleavage stimulat 98.9 6.4E-09 1.4E-13 106.6 8.4 103 1-103 182-291 (430)
84 KOG0973 Histone transcription 98.8 1.4E-08 3E-13 117.8 12.1 127 1-134 23-183 (942)
85 KOG0296 Angio-associated migra 98.8 5.7E-08 1.2E-12 101.6 15.1 120 1-127 74-195 (399)
86 KOG2394 WD40 protein DMR-N9 [G 98.8 1.5E-08 3.3E-13 110.0 11.0 103 1-103 300-452 (636)
87 KOG0277 Peroxisomal targeting 98.8 2.1E-08 4.6E-13 100.6 11.1 101 3-103 73-178 (311)
88 KOG0296 Angio-associated migra 98.8 4.4E-08 9.6E-13 102.4 13.7 102 2-103 117-220 (399)
89 KOG0318 WD40 repeat stress pro 98.8 4.7E-08 1E-12 106.1 14.1 100 4-103 161-265 (603)
90 KOG0639 Transducin-like enhanc 98.8 7.2E-09 1.6E-13 111.6 7.8 67 1-67 519-586 (705)
91 KOG0264 Nucleosome remodeling 98.8 2.4E-08 5.2E-13 106.6 11.3 102 2-103 284-404 (422)
92 KOG0301 Phospholipase A2-activ 98.8 1.9E-08 4.2E-13 111.9 10.7 96 4-103 152-249 (745)
93 KOG1273 WD40 repeat protein [G 98.8 3E-08 6.5E-13 102.0 10.9 68 1-68 33-101 (405)
94 KOG0293 WD40 repeat-containing 98.8 3.1E-08 6.6E-13 104.9 10.5 62 1-62 279-342 (519)
95 KOG0772 Uncharacterized conser 98.8 1.7E-08 3.7E-13 109.2 8.7 101 3-103 281-394 (641)
96 KOG0278 Serine/threonine kinas 98.8 6.1E-08 1.3E-12 97.1 11.8 100 3-103 155-297 (334)
97 KOG0308 Conserved WD40 repeat- 98.8 4.4E-08 9.6E-13 108.5 11.6 103 1-103 181-285 (735)
98 KOG1407 WD40 repeat protein [F 98.7 6.4E-08 1.4E-12 97.5 11.5 75 29-103 185-261 (313)
99 KOG0305 Anaphase promoting com 98.7 4.3E-08 9.3E-13 108.3 10.6 125 1-133 311-442 (484)
100 KOG0299 U3 snoRNP-associated p 98.7 1.9E-08 4.1E-13 107.6 7.4 103 1-103 212-316 (479)
101 KOG0643 Translation initiation 98.7 5E-08 1.1E-12 98.6 9.9 103 1-103 157-317 (327)
102 KOG0305 Anaphase promoting com 98.7 4.6E-08 9.9E-13 108.1 10.1 122 1-131 227-352 (484)
103 KOG1539 WD repeat protein [Gen 98.7 3.1E-08 6.8E-13 112.1 8.7 97 4-101 547-646 (910)
104 KOG0301 Phospholipase A2-activ 98.7 3.2E-08 6.8E-13 110.2 8.3 109 6-127 115-224 (745)
105 KOG1034 Transcriptional repres 98.7 6.5E-08 1.4E-12 100.1 9.9 101 3-103 105-211 (385)
106 KOG0646 WD40 repeat protein [G 98.6 1E-07 2.2E-12 102.3 10.1 103 1-103 91-206 (476)
107 KOG1445 Tumor-specific antigen 98.6 4E-08 8.6E-13 108.2 6.8 102 2-103 639-750 (1012)
108 KOG0269 WD40 repeat-containing 98.6 3.8E-08 8.1E-13 110.8 6.7 102 2-103 99-207 (839)
109 KOG1446 Histone H3 (Lys4) meth 98.6 4E-07 8.8E-12 93.9 13.6 106 1-106 24-133 (311)
110 KOG1408 WD40 repeat protein [F 98.6 1.5E-07 3.3E-12 105.0 11.2 103 1-103 606-713 (1080)
111 KOG0299 U3 snoRNP-associated p 98.6 7.4E-08 1.6E-12 103.2 8.3 122 1-129 152-293 (479)
112 KOG4283 Transcription-coupled 98.6 3.1E-07 6.6E-12 94.0 12.2 114 3-123 114-233 (397)
113 KOG1009 Chromatin assembly com 98.6 1.7E-07 3.7E-12 99.2 10.7 118 5-129 28-172 (434)
114 KOG0288 WD40 repeat protein Ti 98.6 3.9E-08 8.5E-13 104.1 5.6 101 1-103 229-330 (459)
115 KOG0772 Uncharacterized conser 98.6 1.4E-07 3.1E-12 102.1 9.6 74 30-103 265-347 (641)
116 KOG0639 Transducin-like enhanc 98.6 9.9E-08 2.2E-12 103.0 7.2 103 1-103 475-581 (705)
117 KOG1446 Histone H3 (Lys4) meth 98.6 6.5E-07 1.4E-11 92.4 12.8 93 11-104 78-171 (311)
118 KOG4283 Transcription-coupled 98.6 2.8E-07 6E-12 94.3 10.0 101 3-103 158-276 (397)
119 KOG2096 WD40 repeat protein [G 98.6 2.9E-07 6.3E-12 95.0 10.1 101 2-103 198-308 (420)
120 KOG0270 WD40 repeat-containing 98.5 1.4E-07 3E-12 100.8 7.7 101 3-103 192-317 (463)
121 KOG0294 WD40 repeat-containing 98.5 5.5E-07 1.2E-11 92.9 11.5 117 5-128 99-255 (362)
122 KOG1274 WD40 repeat protein [G 98.5 4.7E-07 1E-11 103.8 11.6 102 2-103 107-262 (933)
123 KOG1332 Vesicle coat complex C 98.5 6.5E-07 1.4E-11 89.7 10.8 101 3-103 23-134 (299)
124 KOG2096 WD40 repeat protein [G 98.5 7.3E-07 1.6E-11 92.1 11.1 128 1-129 96-285 (420)
125 KOG0321 WD40 repeat-containing 98.5 3E-07 6.5E-12 101.8 8.6 103 1-103 110-248 (720)
126 KOG0647 mRNA export protein (c 98.5 8.8E-07 1.9E-11 91.0 11.4 99 2-103 83-184 (347)
127 KOG0302 Ribosome Assembly prot 98.5 5E-07 1.1E-11 95.0 9.5 119 6-129 227-354 (440)
128 KOG1036 Mitotic spindle checkp 98.5 1.3E-06 2.7E-11 90.0 12.1 99 2-103 64-163 (323)
129 KOG1407 WD40 repeat protein [F 98.5 7.8E-07 1.7E-11 89.9 10.2 102 2-103 31-136 (313)
130 TIGR03866 PQQ_ABC_repeats PQQ- 98.4 2.6E-06 5.7E-11 86.7 13.9 99 3-103 1-103 (300)
131 KOG0268 Sof1-like rRNA process 98.4 2.2E-07 4.7E-12 97.2 5.7 103 1-103 239-345 (433)
132 KOG0288 WD40 repeat protein Ti 98.4 1.1E-06 2.5E-11 93.2 10.8 100 1-100 351-458 (459)
133 KOG0641 WD40 repeat protein [G 98.4 3E-06 6.6E-11 84.0 12.4 102 1-102 241-348 (350)
134 TIGR03866 PQQ_ABC_repeats PQQ- 98.4 6.9E-06 1.5E-10 83.6 15.4 102 1-103 166-279 (300)
135 KOG0649 WD40 repeat protein [G 98.4 3.2E-06 7E-11 84.7 12.3 101 1-103 124-235 (325)
136 PF08662 eIF2A: Eukaryotic tra 98.4 4.6E-06 1E-10 82.6 13.6 98 1-103 69-179 (194)
137 KOG0303 Actin-binding protein 98.4 1.1E-06 2.4E-11 92.9 9.4 99 4-103 145-249 (472)
138 KOG0278 Serine/threonine kinas 98.4 8.8E-07 1.9E-11 89.0 7.7 67 1-67 234-302 (334)
139 KOG2919 Guanine nucleotide-bin 98.4 1.7E-06 3.7E-11 89.6 9.8 102 2-103 219-327 (406)
140 KOG0771 Prolactin regulatory e 98.3 1.5E-06 3.2E-11 92.6 9.1 103 1-103 154-311 (398)
141 KOG1310 WD40 repeat protein [G 98.3 1.3E-06 2.8E-11 95.5 8.4 103 1-103 60-178 (758)
142 KOG0642 Cell-cycle nuclear pro 98.3 2.2E-06 4.8E-11 94.0 10.0 102 2-103 305-426 (577)
143 KOG0322 G-protein beta subunit 98.3 1.8E-06 3.8E-11 87.5 8.5 69 34-102 252-322 (323)
144 KOG0268 Sof1-like rRNA process 98.3 1.7E-06 3.6E-11 90.8 8.5 98 4-103 80-218 (433)
145 KOG1034 Transcriptional repres 98.3 9.6E-07 2.1E-11 91.6 6.0 99 3-102 148-278 (385)
146 KOG2445 Nuclear pore complex c 98.3 9.7E-06 2.1E-10 83.7 13.2 102 2-103 24-144 (361)
147 KOG1445 Tumor-specific antigen 98.3 1.9E-06 4E-11 95.4 8.5 101 3-103 92-200 (1012)
148 KOG1332 Vesicle coat complex C 98.2 3E-06 6.5E-11 85.0 8.0 126 2-132 69-217 (299)
149 KOG1007 WD repeat protein TSSC 98.2 3.2E-06 6.9E-11 86.5 8.2 101 2-103 183-289 (370)
150 KOG0646 WD40 repeat protein [G 98.2 3.1E-06 6.8E-11 91.1 8.3 129 4-132 51-184 (476)
151 COG2319 FOG: WD40 repeat [Gene 98.2 1.9E-05 4E-10 81.0 13.9 102 1-103 165-271 (466)
152 KOG1009 Chromatin assembly com 98.2 3.4E-06 7.3E-11 89.6 7.4 104 1-104 75-196 (434)
153 KOG0644 Uncharacterized conser 98.2 7.7E-07 1.7E-11 101.0 2.6 98 2-103 201-300 (1113)
154 KOG1408 WD40 repeat protein [F 98.2 7.3E-06 1.6E-10 91.9 10.0 118 4-128 517-689 (1080)
155 KOG2055 WD40 repeat protein [G 98.2 1E-05 2.3E-10 87.1 10.7 102 1-103 313-417 (514)
156 KOG1036 Mitotic spindle checkp 98.2 1.2E-05 2.6E-10 82.9 10.7 100 1-103 23-124 (323)
157 KOG0321 WD40 repeat-containing 98.2 5.1E-06 1.1E-10 92.3 8.4 105 2-106 63-178 (720)
158 KOG2110 Uncharacterized conser 98.2 2.1E-05 4.5E-10 82.9 12.5 92 12-103 152-248 (391)
159 KOG4378 Nuclear protein COP1 [ 98.1 1.4E-05 2.9E-10 86.8 11.0 118 4-128 178-299 (673)
160 KOG4378 Nuclear protein COP1 [ 98.1 6.9E-06 1.5E-10 89.0 8.8 101 3-103 91-195 (673)
161 KOG0974 WD-repeat protein WDR6 98.1 6.1E-06 1.3E-10 96.0 8.4 99 2-103 186-288 (967)
162 KOG0290 Conserved WD40 repeat- 98.1 2.3E-05 5E-10 80.5 11.4 102 2-103 162-318 (364)
163 COG2319 FOG: WD40 repeat [Gene 98.1 5.8E-05 1.3E-09 77.3 14.6 102 2-103 121-229 (466)
164 KOG4227 WD40 repeat protein [G 98.1 2.1E-05 4.5E-10 83.2 10.7 102 2-103 67-179 (609)
165 KOG1539 WD repeat protein [Gen 98.1 3.3E-05 7.2E-10 88.2 13.0 100 5-104 174-276 (910)
166 KOG2394 WD40 protein DMR-N9 [G 98.0 1.6E-05 3.4E-10 87.1 9.2 93 33-132 290-384 (636)
167 KOG1007 WD repeat protein TSSC 98.0 1.8E-05 3.9E-10 81.1 8.9 122 1-129 133-265 (370)
168 KOG1063 RNA polymerase II elon 98.0 1.6E-05 3.5E-10 89.2 9.1 103 1-103 535-648 (764)
169 KOG1274 WD40 repeat protein [G 98.0 3.4E-05 7.4E-10 88.9 11.8 102 2-103 65-168 (933)
170 KOG2919 Guanine nucleotide-bin 98.0 2.9E-05 6.2E-10 80.7 10.1 120 1-127 121-255 (406)
171 PF00400 WD40: WD domain, G-be 98.0 1.6E-05 3.5E-10 57.1 5.9 38 23-60 1-39 (39)
172 KOG2048 WD40 repeat protein [G 98.0 6.5E-05 1.4E-09 84.3 13.2 102 2-103 79-184 (691)
173 KOG4328 WD40 protein [Function 98.0 2E-05 4.2E-10 85.0 8.5 100 4-103 336-450 (498)
174 KOG1272 WD40-repeat-containing 97.9 1.6E-05 3.4E-10 85.8 7.1 97 3-101 263-360 (545)
175 KOG1272 WD40-repeat-containing 97.9 8E-06 1.7E-10 88.0 4.7 103 1-103 219-323 (545)
176 KOG0322 G-protein beta subunit 97.9 9.1E-06 2E-10 82.4 4.6 61 1-61 261-322 (323)
177 KOG2106 Uncharacterized conser 97.9 0.00014 3.1E-09 79.3 13.1 98 1-103 378-477 (626)
178 KOG0650 WD40 repeat nucleolar 97.9 3.5E-05 7.6E-10 85.3 8.3 44 1-45 410-453 (733)
179 KOG0649 WD40 repeat protein [G 97.9 0.00018 4E-09 72.4 12.3 95 5-103 170-274 (325)
180 KOG1188 WD40 repeat protein [G 97.8 8.5E-05 1.9E-09 77.7 10.0 62 4-65 41-105 (376)
181 KOG2048 WD40 repeat protein [G 97.8 0.00014 3.1E-09 81.6 12.2 103 1-103 120-233 (691)
182 KOG0307 Vesicle coat complex C 97.8 1.7E-05 3.7E-10 93.1 4.0 101 5-105 82-194 (1049)
183 KOG0307 Vesicle coat complex C 97.7 4.5E-05 9.8E-10 89.7 6.1 118 3-127 174-301 (1049)
184 KOG2111 Uncharacterized conser 97.7 0.00045 9.8E-09 71.9 12.4 62 2-63 192-257 (346)
185 KOG1063 RNA polymerase II elon 97.7 0.00019 4.1E-09 80.8 10.0 103 1-103 582-699 (764)
186 KOG4547 WD40 repeat-containing 97.6 0.00064 1.4E-08 75.5 13.6 117 4-129 71-191 (541)
187 KOG1538 Uncharacterized conser 97.6 0.00031 6.7E-09 78.7 10.8 101 1-102 22-161 (1081)
188 KOG2111 Uncharacterized conser 97.6 0.00048 1E-08 71.7 11.5 95 9-103 155-256 (346)
189 KOG2110 Uncharacterized conser 97.6 0.001 2.2E-08 70.5 13.1 100 3-103 97-204 (391)
190 KOG0644 Uncharacterized conser 97.6 3.3E-05 7.2E-10 88.2 2.2 95 28-129 185-281 (1113)
191 KOG1310 WD40 repeat protein [G 97.6 0.00019 4.1E-09 79.0 7.9 80 27-106 44-128 (758)
192 KOG1240 Protein kinase contain 97.5 0.0011 2.3E-08 79.1 14.2 105 1-105 1059-1227(1431)
193 KOG2055 WD40 repeat protein [G 97.5 0.00061 1.3E-08 73.8 11.3 103 1-103 223-374 (514)
194 KOG0974 WD-repeat protein WDR6 97.5 0.0006 1.3E-08 79.9 11.0 104 2-106 144-249 (967)
195 KOG1273 WD40 repeat protein [G 97.5 0.00033 7.2E-09 72.8 7.9 68 36-103 26-95 (405)
196 PF08662 eIF2A: Eukaryotic tra 97.5 0.00069 1.5E-08 67.1 9.9 64 1-67 110-183 (194)
197 KOG1524 WD40 repeat-containing 97.4 0.00062 1.4E-08 74.9 9.6 102 1-103 114-216 (737)
198 KOG4328 WD40 protein [Function 97.4 0.0005 1.1E-08 74.4 8.8 98 6-103 294-399 (498)
199 KOG3914 WD repeat protein WDR4 97.4 0.00037 7.9E-09 74.4 7.6 94 9-103 128-223 (390)
200 KOG3881 Uncharacterized conser 97.4 0.0015 3.2E-08 69.7 11.3 101 3-103 216-320 (412)
201 KOG2139 WD40 repeat protein [G 97.3 0.002 4.3E-08 68.3 11.3 101 1-103 205-309 (445)
202 PRK11028 6-phosphogluconolacto 97.3 0.004 8.6E-08 66.0 13.7 102 1-103 184-304 (330)
203 KOG4547 WD40 repeat-containing 97.3 0.0018 3.9E-08 72.0 11.3 99 4-103 115-220 (541)
204 PF02239 Cytochrom_D1: Cytochr 97.2 0.0049 1.1E-07 67.2 14.3 99 4-103 6-108 (369)
205 PRK01742 tolB translocation pr 97.2 0.0029 6.3E-08 70.0 12.5 99 1-103 213-322 (429)
206 KOG1587 Cytoplasmic dynein int 97.2 0.00097 2.1E-08 75.9 8.4 99 4-103 412-516 (555)
207 PRK11028 6-phosphogluconolacto 97.1 0.0054 1.2E-07 65.0 13.0 101 1-103 89-205 (330)
208 KOG2139 WD40 repeat protein [G 97.1 0.0035 7.5E-08 66.5 10.8 99 3-103 153-268 (445)
209 KOG0280 Uncharacterized conser 97.1 0.001 2.3E-08 68.7 6.8 98 4-103 179-284 (339)
210 KOG1517 Guanine nucleotide bin 97.1 0.0039 8.4E-08 73.5 11.5 101 2-103 1220-1333(1387)
211 KOG0280 Uncharacterized conser 97.1 0.0052 1.1E-07 63.7 11.2 101 3-103 133-241 (339)
212 KOG0650 WD40 repeat nucleolar 97.0 0.0033 7.2E-08 70.2 9.9 76 25-102 392-471 (733)
213 KOG0642 Cell-cycle nuclear pro 97.0 0.0017 3.8E-08 71.9 7.8 102 27-129 288-403 (577)
214 KOG1517 Guanine nucleotide bin 97.0 0.0063 1.4E-07 71.8 12.6 102 2-104 1177-1288(1387)
215 PRK01742 tolB translocation pr 97.0 0.0048 1E-07 68.3 11.3 113 1-123 301-416 (429)
216 KOG1963 WD40 repeat protein [G 96.9 0.0049 1.1E-07 71.4 11.0 101 1-102 215-321 (792)
217 PF02239 Cytochrom_D1: Cytochr 96.9 0.017 3.7E-07 63.0 14.8 102 1-103 46-158 (369)
218 KOG0290 Conserved WD40 repeat- 96.9 0.0045 9.8E-08 64.0 9.1 98 4-103 114-227 (364)
219 KOG2321 WD40 repeat protein [G 96.9 0.0058 1.3E-07 68.1 10.4 94 11-104 153-259 (703)
220 KOG2106 Uncharacterized conser 96.9 0.015 3.4E-07 63.9 13.5 104 3-109 213-322 (626)
221 KOG1188 WD40 repeat protein [G 96.8 0.0047 1E-07 65.0 9.1 101 2-103 128-242 (376)
222 PF00400 WD40: WD domain, G-be 96.8 0.004 8.7E-08 44.4 6.1 38 64-101 1-39 (39)
223 KOG4190 Uncharacterized conser 96.8 0.0022 4.8E-08 70.7 6.4 101 2-103 746-859 (1034)
224 KOG2321 WD40 repeat protein [G 96.7 0.004 8.7E-08 69.3 8.0 101 3-103 187-302 (703)
225 KOG3881 Uncharacterized conser 96.7 0.003 6.4E-08 67.5 6.5 67 1-67 257-325 (412)
226 KOG2445 Nuclear pore complex c 96.7 0.0071 1.5E-07 63.0 9.0 74 30-103 10-91 (361)
227 KOG1240 Protein kinase contain 96.7 0.0082 1.8E-07 71.9 10.4 86 18-104 1034-1129(1431)
228 KOG0771 Prolactin regulatory e 96.7 0.0027 5.8E-08 68.2 6.0 66 37-103 148-215 (398)
229 KOG1538 Uncharacterized conser 96.6 0.0053 1.1E-07 69.2 7.9 69 35-103 14-83 (1081)
230 KOG3914 WD repeat protein WDR4 96.6 0.0033 7.2E-08 67.3 6.1 70 1-71 161-232 (390)
231 PRK05137 tolB translocation pr 96.5 0.033 7.2E-07 61.7 13.4 101 1-103 211-322 (435)
232 KOG1524 WD40 repeat-containing 96.4 0.0077 1.7E-07 66.6 7.7 87 1-99 196-282 (737)
233 KOG2695 WD40 repeat protein [G 96.4 0.009 1.9E-07 63.1 7.8 100 3-103 264-376 (425)
234 smart00320 WD40 WD40 repeats. 96.4 0.0098 2.1E-07 39.4 5.4 38 23-60 2-40 (40)
235 KOG1523 Actin-related protein 96.2 0.054 1.2E-06 56.9 12.0 103 1-103 20-130 (361)
236 TIGR02800 propeller_TolB tol-p 96.2 0.079 1.7E-06 57.7 14.1 100 1-102 199-307 (417)
237 PRK03629 tolB translocation pr 96.2 0.075 1.6E-06 59.0 14.0 101 1-103 208-317 (429)
238 PRK03629 tolB translocation pr 96.2 0.1 2.2E-06 58.0 15.1 100 1-103 296-406 (429)
239 PRK02889 tolB translocation pr 96.2 0.043 9.4E-07 60.8 12.0 101 1-103 205-314 (427)
240 KOG2695 WD40 repeat protein [G 96.1 0.0096 2.1E-07 62.9 6.0 71 2-72 310-386 (425)
241 KOG1523 Actin-related protein 96.1 0.016 3.4E-07 60.8 7.4 103 1-103 65-176 (361)
242 KOG4714 Nucleoporin [Nuclear s 96.1 0.019 4E-07 58.8 7.7 62 2-63 191-255 (319)
243 KOG4497 Uncharacterized conser 96.1 0.057 1.2E-06 56.9 11.3 89 4-93 62-153 (447)
244 PRK04922 tolB translocation pr 96.0 0.11 2.3E-06 57.7 14.4 101 1-103 257-368 (433)
245 KOG1275 PAB-dependent poly(A) 96.0 0.02 4.3E-07 66.9 8.6 60 2-63 186-255 (1118)
246 PRK04922 tolB translocation pr 96.0 0.066 1.4E-06 59.4 12.7 101 1-103 213-322 (433)
247 PLN02919 haloacid dehalogenase 96.0 0.096 2.1E-06 64.6 15.0 103 1-103 749-888 (1057)
248 COG4946 Uncharacterized protei 95.8 0.16 3.4E-06 56.0 13.8 100 3-103 371-477 (668)
249 PRK05137 tolB translocation pr 95.6 0.19 4.1E-06 55.7 14.0 101 1-103 255-366 (435)
250 PRK02889 tolB translocation pr 95.5 0.1 2.2E-06 57.9 11.2 89 13-103 176-270 (427)
251 KOG2315 Predicted translation 95.4 0.13 2.7E-06 57.6 11.4 92 9-104 290-391 (566)
252 KOG1645 RING-finger-containing 95.4 0.039 8.4E-07 59.5 7.2 88 15-103 175-266 (463)
253 PF11768 DUF3312: Protein of u 95.3 0.05 1.1E-06 61.2 8.0 61 1-63 269-330 (545)
254 TIGR02800 propeller_TolB tol-p 95.3 0.3 6.4E-06 53.2 14.1 101 1-103 243-354 (417)
255 KOG1409 Uncharacterized conser 95.2 0.049 1.1E-06 57.7 7.1 63 1-63 207-271 (404)
256 PF10282 Lactonase: Lactonase, 95.2 0.48 1E-05 51.0 15.0 103 1-103 201-322 (345)
257 KOG1064 RAVE (regulator of V-A 95.2 0.016 3.4E-07 71.9 3.8 83 10-103 2312-2398(2439)
258 PRK01029 tolB translocation pr 95.2 0.24 5.1E-06 55.1 13.0 102 1-103 290-403 (428)
259 PRK00178 tolB translocation pr 95.1 0.32 6.9E-06 53.6 13.8 100 1-102 208-316 (430)
260 KOG2066 Vacuolar assembly/sort 95.1 0.14 3.1E-06 59.3 11.0 99 2-103 82-187 (846)
261 KOG4227 WD40 repeat protein [G 95.0 0.13 2.9E-06 55.2 9.7 103 3-105 117-227 (609)
262 PF11768 DUF3312: Protein of u 95.0 0.19 4.1E-06 56.7 11.4 73 31-105 257-331 (545)
263 PF10282 Lactonase: Lactonase, 95.0 0.68 1.5E-05 49.8 15.6 103 1-103 96-222 (345)
264 KOG1963 WD40 repeat protein [G 95.0 0.14 3.1E-06 59.6 10.6 93 11-104 179-282 (792)
265 KOG1064 RAVE (regulator of V-A 94.9 0.088 1.9E-06 65.7 8.9 103 1-103 2218-2366(2439)
266 KOG1409 Uncharacterized conser 94.8 0.12 2.5E-06 55.0 8.6 86 21-106 185-273 (404)
267 KOG1587 Cytoplasmic dynein int 94.8 0.089 1.9E-06 60.2 8.3 106 4-109 361-478 (555)
268 PRK04792 tolB translocation pr 94.8 0.37 8E-06 53.9 13.1 101 1-103 227-336 (448)
269 KOG1912 WD40 repeat protein [G 94.6 0.24 5.2E-06 57.4 11.1 120 4-123 80-206 (1062)
270 KOG4497 Uncharacterized conser 94.6 0.094 2E-06 55.4 7.1 125 1-127 18-148 (447)
271 KOG0309 Conserved WD40 repeat- 94.5 0.051 1.1E-06 62.3 5.4 100 4-103 128-232 (1081)
272 PRK00178 tolB translocation pr 94.5 0.7 1.5E-05 50.9 14.4 101 1-103 252-363 (430)
273 TIGR02658 TTQ_MADH_Hv methylam 94.4 0.58 1.3E-05 50.8 13.1 73 1-73 55-147 (352)
274 KOG4714 Nucleoporin [Nuclear s 94.3 0.043 9.3E-07 56.3 4.0 89 15-103 161-254 (319)
275 KOG1275 PAB-dependent poly(A) 94.2 0.2 4.4E-06 58.9 9.5 99 3-103 147-254 (1118)
276 PRK04792 tolB translocation pr 94.0 0.84 1.8E-05 51.0 14.0 100 1-103 271-380 (448)
277 KOG1334 WD40 repeat protein [G 94.0 0.049 1.1E-06 59.9 3.9 79 25-103 134-217 (559)
278 PRK01029 tolB translocation pr 94.0 0.65 1.4E-05 51.7 12.8 103 1-103 240-359 (428)
279 COG2706 3-carboxymuconate cycl 93.5 1.2 2.6E-05 47.7 12.9 102 1-103 154-274 (346)
280 KOG1354 Serine/threonine prote 93.4 0.32 6.9E-06 51.8 8.4 100 4-103 227-359 (433)
281 PLN02919 haloacid dehalogenase 93.3 1.3 2.8E-05 54.9 15.0 101 2-103 694-833 (1057)
282 KOG2314 Translation initiation 93.3 0.34 7.3E-06 54.4 8.8 99 1-103 220-334 (698)
283 TIGR02658 TTQ_MADH_Hv methylam 92.9 2.1 4.6E-05 46.5 14.2 89 13-103 27-136 (352)
284 PF15492 Nbas_N: Neuroblastoma 92.9 2.3 5E-05 44.4 13.6 29 75-103 230-259 (282)
285 KOG2315 Predicted translation 92.8 2.3 5E-05 47.9 14.2 86 14-103 252-344 (566)
286 KOG4532 WD40-like repeat conta 92.5 0.83 1.8E-05 47.3 9.7 96 6-103 131-233 (344)
287 KOG1334 WD40 repeat protein [G 92.5 0.055 1.2E-06 59.5 1.4 63 1-63 404-467 (559)
288 smart00320 WD40 WD40 repeats. 92.4 0.47 1E-05 30.8 5.6 36 66-101 4-40 (40)
289 KOG4190 Uncharacterized conser 92.3 0.11 2.5E-06 57.7 3.5 76 26-103 728-812 (1034)
290 COG2706 3-carboxymuconate cycl 92.2 2.2 4.8E-05 45.8 12.7 103 1-103 98-221 (346)
291 KOG1354 Serine/threonine prote 92.1 0.6 1.3E-05 49.8 8.3 74 30-103 161-244 (433)
292 KOG4640 Anaphase-promoting com 92.0 0.45 9.7E-06 54.2 7.7 65 3-68 32-98 (665)
293 PF13360 PQQ_2: PQQ-like domai 91.7 5.6 0.00012 39.3 14.8 98 3-103 122-230 (238)
294 PF13360 PQQ_2: PQQ-like domai 91.5 2.9 6.2E-05 41.4 12.4 100 2-103 35-140 (238)
295 KOG4532 WD40-like repeat conta 91.5 0.84 1.8E-05 47.3 8.4 69 2-70 214-290 (344)
296 TIGR03300 assembly_YfgL outer 91.4 3.1 6.7E-05 44.9 13.4 96 3-103 241-338 (377)
297 TIGR03300 assembly_YfgL outer 91.2 2.1 4.5E-05 46.2 11.9 95 3-100 279-376 (377)
298 KOG2079 Vacuolar assembly/sort 91.2 0.6 1.3E-05 56.1 8.0 98 4-103 100-203 (1206)
299 COG4946 Uncharacterized protei 91.1 1.6 3.5E-05 48.4 10.5 69 1-69 411-484 (668)
300 PF14783 BBS2_Mid: Ciliary BBS 90.8 5.6 0.00012 36.1 12.1 88 4-98 16-109 (111)
301 PF04762 IKI3: IKI3 family; I 90.2 1.9 4.2E-05 52.7 11.5 99 2-103 220-333 (928)
302 KOG2314 Translation initiation 90.1 1.1 2.3E-05 50.5 8.2 68 1-68 259-340 (698)
303 COG5170 CDC55 Serine/threonine 89.8 0.39 8.4E-06 50.5 4.3 101 2-104 183-310 (460)
304 PRK02888 nitrous-oxide reducta 89.7 3.5 7.6E-05 47.8 12.3 99 2-103 287-404 (635)
305 KOG2041 WD40 repeat protein [G 88.2 1.5 3.3E-05 50.7 7.8 97 2-98 25-140 (1189)
306 PRK04043 tolB translocation pr 87.8 9.9 0.00022 42.3 14.2 101 1-103 197-307 (419)
307 KOG0309 Conserved WD40 repeat- 87.8 1.6 3.5E-05 50.7 7.8 115 4-126 83-205 (1081)
308 KOG3617 WD40 and TPR repeat-co 87.7 1 2.2E-05 53.0 6.2 99 1-103 25-131 (1416)
309 KOG1645 RING-finger-containing 87.5 1.6 3.5E-05 47.5 7.2 59 5-64 208-268 (463)
310 PF08450 SGL: SMP-30/Gluconola 87.2 16 0.00035 36.8 14.3 101 1-103 95-213 (246)
311 COG5170 CDC55 Serine/threonine 86.9 2.4 5.2E-05 44.8 7.9 99 5-103 236-367 (460)
312 KOG2444 WD40 repeat protein [G 86.3 2.1 4.5E-05 43.5 6.9 101 3-103 70-177 (238)
313 PF08450 SGL: SMP-30/Gluconola 86.2 28 0.0006 35.1 15.4 88 2-93 11-105 (246)
314 PF07433 DUF1513: Protein of u 84.6 14 0.00031 39.4 12.5 51 1-51 60-116 (305)
315 PF00930 DPPIV_N: Dipeptidyl p 84.4 6 0.00013 42.6 10.0 102 1-103 2-131 (353)
316 PRK04043 tolB translocation pr 83.9 17 0.00038 40.4 13.6 89 1-93 242-338 (419)
317 KOG4640 Anaphase-promoting com 83.7 3.8 8.2E-05 47.0 8.1 69 34-103 21-92 (665)
318 PF15492 Nbas_N: Neuroblastoma 83.0 41 0.00088 35.4 14.7 120 1-121 7-145 (282)
319 KOG1912 WD40 repeat protein [G 82.9 7.2 0.00016 45.9 10.0 99 4-103 27-143 (1062)
320 PRK11138 outer membrane biogen 82.0 13 0.00029 40.4 11.7 95 4-101 295-392 (394)
321 PF14783 BBS2_Mid: Ciliary BBS 81.7 14 0.0003 33.6 9.5 65 36-103 2-71 (111)
322 PF12234 Rav1p_C: RAVE protein 81.3 19 0.00041 42.2 12.9 92 10-103 48-156 (631)
323 PF08553 VID27: VID27 cytoplas 81.1 3.2 6.9E-05 49.6 6.7 57 4-61 589-646 (794)
324 COG5354 Uncharacterized protei 80.9 4.3 9.4E-05 45.4 7.1 98 1-102 42-159 (561)
325 PF04053 Coatomer_WDAD: Coatom 80.7 4.7 0.0001 45.3 7.6 57 3-62 117-173 (443)
326 KOG2114 Vacuolar assembly/sort 80.4 11 0.00023 44.9 10.4 103 1-104 33-156 (933)
327 PF09384 UTP15_C: UTP15 C term 80.3 35 0.00077 32.4 12.4 89 475-565 18-113 (148)
328 KOG1920 IkappaB kinase complex 79.8 6.2 0.00013 48.4 8.4 100 2-103 206-322 (1265)
329 KOG0882 Cyclophilin-related pe 79.6 1.3 2.8E-05 48.8 2.6 100 4-103 21-130 (558)
330 KOG4649 PQQ (pyrrolo-quinoline 79.1 17 0.00037 37.9 10.2 70 3-73 63-134 (354)
331 PF07569 Hira: TUP1-like enhan 79.0 13 0.00029 37.5 9.6 62 2-63 21-96 (219)
332 PF04003 Utp12: Dip2/Utp12 Fam 78.6 15 0.00033 32.5 8.9 46 521-566 25-70 (110)
333 PF04762 IKI3: IKI3 family; I 78.3 23 0.0005 43.5 13.0 103 1-103 266-379 (928)
334 KOG3621 WD40 repeat-containing 77.1 8.5 0.00018 44.8 8.2 103 2-104 44-155 (726)
335 KOG1832 HIV-1 Vpr-binding prot 76.6 3.2 7E-05 49.3 4.7 82 22-103 1090-1175(1516)
336 COG5354 Uncharacterized protei 75.1 10 0.00022 42.6 7.9 86 16-103 15-116 (561)
337 PRK02888 nitrous-oxide reducta 74.5 17 0.00038 42.3 9.9 93 1-94 330-452 (635)
338 PF08553 VID27: VID27 cytoplas 72.8 29 0.00063 41.8 11.5 95 6-103 545-647 (794)
339 KOG2066 Vacuolar assembly/sort 72.0 38 0.00082 40.3 11.7 91 3-103 49-146 (846)
340 PF07433 DUF1513: Protein of u 71.7 62 0.0013 34.6 12.5 89 3-91 17-116 (305)
341 KOG0882 Cyclophilin-related pe 71.7 19 0.0004 40.1 8.7 101 2-103 64-174 (558)
342 TIGR02276 beta_rpt_yvtn 40-res 69.7 21 0.00046 25.3 6.2 31 1-31 1-32 (42)
343 KOG2395 Protein involved in va 67.6 30 0.00065 39.4 9.4 98 5-103 348-459 (644)
344 KOG2444 WD40 repeat protein [G 65.3 11 0.00025 38.3 5.2 60 3-62 114-177 (238)
345 PF10313 DUF2415: Uncharacteri 65.0 22 0.00048 26.8 5.4 30 34-63 1-34 (43)
346 PF12894 Apc4_WD40: Anaphase-p 64.8 20 0.00044 27.3 5.3 29 33-61 11-40 (47)
347 KOG2114 Vacuolar assembly/sort 63.8 94 0.002 37.4 12.8 100 3-103 137-243 (933)
348 PRK11138 outer membrane biogen 63.6 48 0.001 36.1 10.3 98 3-103 69-178 (394)
349 PF03178 CPSF_A: CPSF A subuni 62.9 98 0.0021 32.6 12.2 98 3-104 99-203 (321)
350 KOG1008 Uncharacterized conser 60.0 3.4 7.5E-05 47.5 0.5 90 11-102 127-224 (783)
351 KOG1008 Uncharacterized conser 59.7 2.7 5.8E-05 48.3 -0.4 101 2-103 165-275 (783)
352 PF05694 SBP56: 56kDa selenium 59.2 1.1E+02 0.0023 34.5 11.7 100 1-100 139-275 (461)
353 PF00780 CNH: CNH domain; Int 59.1 1.2E+02 0.0025 31.0 11.7 59 2-63 6-65 (275)
354 KOG3617 WD40 and TPR repeat-co 59.1 11 0.00024 44.8 4.3 60 3-62 71-131 (1416)
355 KOG1916 Nuclear protein, conta 58.8 18 0.00038 43.5 5.9 67 1-67 245-328 (1283)
356 PF04053 Coatomer_WDAD: Coatom 58.6 43 0.00094 37.7 8.9 56 45-103 117-173 (443)
357 PF02897 Peptidase_S9_N: Proly 58.2 87 0.0019 34.2 11.2 89 1-90 133-243 (414)
358 KOG4649 PQQ (pyrrolo-quinoline 57.2 1.5E+02 0.0034 31.1 11.7 98 4-103 24-123 (354)
359 COG3386 Gluconolactonase [Carb 57.0 1.1E+02 0.0024 32.7 11.3 88 16-103 144-243 (307)
360 KOG2395 Protein involved in va 56.5 20 0.00044 40.7 5.7 56 5-61 443-499 (644)
361 PF05935 Arylsulfotrans: Aryls 56.3 1.9E+02 0.0041 32.8 13.6 99 1-103 157-301 (477)
362 PF11715 Nup160: Nucleoporin N 56.2 50 0.0011 37.7 9.2 72 2-73 157-259 (547)
363 KOG2079 Vacuolar assembly/sort 55.1 28 0.0006 42.7 6.8 53 2-54 141-196 (1206)
364 KOG1832 HIV-1 Vpr-binding prot 52.4 13 0.00027 44.6 3.4 96 2-103 1112-1214(1516)
365 KOG3621 WD40 repeat-containing 51.5 20 0.00043 41.9 4.8 62 2-63 87-155 (726)
366 COG3391 Uncharacterized conser 51.2 2.8E+02 0.0062 30.2 13.7 97 5-103 88-190 (381)
367 PF05096 Glu_cyclase_2: Glutam 51.0 1.7E+02 0.0038 30.6 11.2 97 2-103 55-157 (264)
368 PF11715 Nup160: Nucleoporin N 50.8 21 0.00046 40.8 5.0 29 2-30 229-257 (547)
369 PRK15365 type III secretion sy 47.7 41 0.0009 29.7 5.0 46 579-625 14-60 (107)
370 PF07035 Mic1: Colon cancer-as 47.3 55 0.0012 31.9 6.5 64 455-518 82-150 (167)
371 COG0823 TolB Periplasmic compo 46.4 1.1E+02 0.0024 34.3 9.6 91 1-92 247-344 (425)
372 PHA02713 hypothetical protein; 46.3 77 0.0017 36.6 8.7 87 14-103 433-533 (557)
373 TIGR02276 beta_rpt_yvtn 40-res 45.5 68 0.0015 22.6 5.3 33 43-75 1-35 (42)
374 KOG2041 WD40 repeat protein [G 44.8 52 0.0011 38.8 6.6 71 33-103 14-101 (1189)
375 PF12530 DUF3730: Protein of u 43.4 1.8E+02 0.0039 29.6 9.9 77 475-556 55-150 (234)
376 COG0823 TolB Periplasmic compo 42.8 1.3E+02 0.0028 33.7 9.4 86 14-103 219-312 (425)
377 PF05694 SBP56: 56kDa selenium 42.5 2E+02 0.0043 32.4 10.5 92 12-103 221-342 (461)
378 PF04841 Vps16_N: Vps16, N-ter 42.3 2.2E+02 0.0047 31.6 11.1 49 14-63 62-110 (410)
379 KOG1920 IkappaB kinase complex 41.8 2.2E+02 0.0048 35.8 11.5 65 1-65 251-325 (1265)
380 PF05096 Glu_cyclase_2: Glutam 41.6 4.4E+02 0.0096 27.7 13.5 89 10-103 107-203 (264)
381 PHA02713 hypothetical protein; 41.5 1.4E+02 0.0031 34.5 9.8 50 2-53 351-407 (557)
382 cd00216 PQQ_DH Dehydrogenases 39.9 3E+02 0.0066 31.1 12.1 94 5-103 303-424 (488)
383 PF03178 CPSF_A: CPSF A subuni 39.1 3.1E+02 0.0067 28.8 11.4 87 13-103 62-157 (321)
384 PF06433 Me-amine-dh_H: Methyl 39.0 5.5E+02 0.012 28.0 13.2 101 1-103 45-165 (342)
385 PF12894 Apc4_WD40: Anaphase-p 38.8 48 0.001 25.3 3.7 24 1-25 21-44 (47)
386 cd03567 VHS_GGA VHS domain fam 38.3 78 0.0017 29.8 5.8 65 499-568 14-78 (139)
387 PHA03098 kelch-like protein; P 38.0 1.6E+02 0.0034 33.4 9.5 99 2-103 389-511 (534)
388 cd00216 PQQ_DH Dehydrogenases 37.5 2E+02 0.0043 32.6 10.1 68 4-72 62-138 (488)
389 PF02985 HEAT: HEAT repeat; I 37.2 64 0.0014 21.8 3.8 30 529-558 1-30 (31)
390 PF14655 RAB3GAP2_N: Rab3 GTPa 36.5 1.6E+02 0.0034 33.0 8.8 73 1-73 317-409 (415)
391 PRK13616 lipoprotein LpqB; Pro 36.4 3E+02 0.0065 32.2 11.4 70 33-103 447-525 (591)
392 PF00790 VHS: VHS domain; Int 35.9 99 0.0021 28.8 6.2 63 502-569 21-83 (140)
393 PF07569 Hira: TUP1-like enhan 35.3 1.7E+02 0.0038 29.5 8.3 62 41-103 18-95 (219)
394 cd00197 VHS_ENTH_ANTH VHS, ENT 35.2 80 0.0017 28.1 5.2 61 502-567 16-76 (115)
395 PF14870 PSII_BNR: Photosynthe 34.4 4.9E+02 0.011 27.8 11.8 93 1-94 154-253 (302)
396 PF07250 Glyoxal_oxid_N: Glyox 33.5 1.1E+02 0.0023 31.8 6.4 77 16-94 49-138 (243)
397 PHA02790 Kelch-like protein; P 33.5 2.8E+02 0.0061 31.3 10.4 100 2-103 271-384 (480)
398 KOG1087 Cytosolic sorting prot 33.4 1.1E+02 0.0023 34.8 6.9 69 494-567 9-77 (470)
399 PHA03098 kelch-like protein; P 33.2 2.2E+02 0.0049 32.2 9.7 91 2-93 342-446 (534)
400 PF10274 ParcG: Parkin co-regu 33.0 1.5E+02 0.0032 29.5 7.0 80 525-611 77-170 (183)
401 PF12234 Rav1p_C: RAVE protein 31.9 3.7E+02 0.008 31.8 11.1 68 35-102 31-103 (631)
402 PF10602 RPN7: 26S proteasome 31.7 4.9E+02 0.011 25.3 12.8 117 458-574 19-144 (177)
403 PF07544 Med9: RNA polymerase 30.9 3.4E+02 0.0073 23.1 8.2 73 528-606 3-81 (83)
404 PHA02790 Kelch-like protein; P 30.6 3.2E+02 0.0069 30.9 10.3 98 2-103 362-470 (480)
405 cd00923 Cyt_c_Oxidase_Va Cytoc 30.4 1E+02 0.0022 27.6 4.8 46 491-537 45-90 (103)
406 COG5167 VID27 Protein involved 30.3 1E+02 0.0022 35.2 5.9 59 4-62 574-632 (776)
407 PF12768 Rax2: Cortical protei 29.8 4.2E+02 0.0091 28.0 10.3 55 12-66 15-76 (281)
408 PF11707 Npa1: Ribosome 60S bi 29.3 4.6E+02 0.01 28.1 10.8 66 521-598 20-85 (330)
409 cd03569 VHS_Hrs_Vps27p VHS dom 28.6 1.5E+02 0.0032 27.9 6.1 64 500-568 18-81 (142)
410 cd03561 VHS VHS domain family; 28.2 1.2E+02 0.0026 28.0 5.3 64 500-568 14-77 (133)
411 PF02897 Peptidase_S9_N: Proly 27.7 2.9E+02 0.0063 30.0 9.2 55 36-92 126-188 (414)
412 PF14655 RAB3GAP2_N: Rab3 GTPa 27.5 2.5E+02 0.0054 31.4 8.5 75 29-103 303-398 (415)
413 PF10158 LOH1CR12: Tumour supp 27.1 2E+02 0.0044 26.9 6.5 83 537-621 32-117 (131)
414 smart00564 PQQ beta-propeller 27.1 1.4E+02 0.0031 19.8 4.3 24 5-28 8-31 (33)
415 PF08596 Lgl_C: Lethal giant l 27.0 7.7E+02 0.017 27.3 12.2 75 29-104 82-174 (395)
416 PRK10115 protease 2; Provision 26.9 7.7E+02 0.017 29.4 13.0 101 1-103 136-255 (686)
417 cd03568 VHS_STAM VHS domain fa 26.8 1.5E+02 0.0033 28.0 5.8 70 494-568 8-77 (144)
418 COG5167 VID27 Protein involved 26.6 3.5E+02 0.0075 31.2 9.1 57 47-104 575-633 (776)
419 PF11315 Med30: Mediator compl 26.6 3E+02 0.0065 26.5 7.6 59 545-603 6-64 (150)
420 cd03565 VHS_Tom1 VHS domain fa 26.6 1.5E+02 0.0033 27.8 5.8 65 499-568 14-79 (141)
421 PF14852 Fis1_TPR_N: Fis1 N-te 26.3 40 0.00087 24.2 1.3 26 532-557 7-32 (35)
422 KOG4441 Proteins containing BT 26.1 2.4E+02 0.0052 32.8 8.4 100 2-103 332-452 (571)
423 PF07064 RIC1: RIC1; InterPro 26.1 3.2E+02 0.0068 28.5 8.5 84 486-570 93-182 (258)
424 PRK13616 lipoprotein LpqB; Pro 26.1 6.4E+02 0.014 29.5 11.9 96 1-99 359-472 (591)
425 PF06433 Me-amine-dh_H: Methyl 25.7 2.1E+02 0.0046 31.2 7.2 57 14-71 270-329 (342)
426 PF14781 BBS2_N: Ciliary BBSom 25.6 5.8E+02 0.013 24.1 11.2 97 4-103 11-125 (136)
427 COG3490 Uncharacterized protei 25.5 5.5E+02 0.012 27.6 9.9 52 1-52 123-180 (366)
428 KOG4441 Proteins containing BT 24.9 5.2E+02 0.011 30.1 10.8 100 3-103 285-404 (571)
429 KOG4499 Ca2+-binding protein R 22.7 9E+02 0.02 25.3 11.1 76 7-82 174-261 (310)
430 KOG4499 Ca2+-binding protein R 22.4 3E+02 0.0065 28.7 7.1 41 2-42 222-262 (310)
431 COG3204 Uncharacterized protei 22.3 3.6E+02 0.0078 28.9 7.9 74 30-103 82-158 (316)
432 PF06977 SdiA-regulated: SdiA- 22.1 8.9E+02 0.019 25.0 11.0 75 28-103 16-94 (248)
433 PF00502 Phycobilisome: Phycob 21.9 7E+02 0.015 23.8 9.9 60 504-563 44-119 (157)
434 PF04841 Vps16_N: Vps16, N-ter 21.9 1.1E+03 0.024 26.0 13.2 38 34-71 217-255 (410)
435 PF14583 Pectate_lyase22: Olig 21.3 8.8E+02 0.019 26.9 11.0 70 1-70 45-118 (386)
436 PHA02939 hypothetical protein; 21.0 6.6E+02 0.014 23.2 8.4 86 506-602 40-140 (144)
437 smart00188 IL10 Interleukin-10 20.5 1.4E+02 0.0031 28.2 4.1 74 547-622 42-130 (137)
438 smart00288 VHS Domain present 20.2 2.2E+02 0.0047 26.3 5.4 65 499-568 13-77 (133)
No 1
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.7e-67 Score=570.39 Aligned_cols=611 Identities=35% Similarity=0.450 Sum_probs=521.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|-|.++|+|+.|+.+++||.+...|++.+.+|...|.++.|+|+|+|+++|+.| +++|||+.-|+....|..|...+..
T Consensus 122 P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~s 201 (825)
T KOG0267|consen 122 PYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQS 201 (825)
T ss_pred cceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccc
Confidence 457889999999999999999999999999999999999999999999999998 9999999999999888878788888
Q ss_pred EEec-CCCEEEEeeCCCeEEEEecc----CCcccccc-------------------------------------------
Q 006939 80 LNVH-EGKLLGCSYNQSCVGVWVVD----ISRIEPYT------------------------------------------- 111 (625)
Q Consensus 80 l~~~-dg~lL~sg~~Dg~V~vWdv~----~~~~~~~~------------------------------------------- 111 (625)
+.|| ...+++.|+.|++|++||++ +....+..
T Consensus 202 le~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~~~~~a~ah~~~~~~~~Ep~ 281 (825)
T KOG0267|consen 202 LEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLSESRTASAHVRKTLARWEPE 281 (825)
T ss_pred cccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhhhhhcccceeeccccccccc
Confidence 8784 56677999999999999998 11111110
Q ss_pred -ccceeEEeccCCCccccccCcCcccccccccccCcccccCCCCCCccccccccccccc-CCCCcchhcccccccccccc
Q 006939 112 -IGSVTRVNGLSESKSSASGNLSVLNENSAKASLGKLSVSQNSDPLVKETKSLGRLSVS-QNSDPLLKETKTLGRLSVSQ 189 (625)
Q Consensus 112 -~~~i~~l~gHs~~v~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~t~s~g~~s~~-~~~~~~~~e~~~~~~~s~~~ 189 (625)
.........|.+.+.+...++..+|.......++++...+.. ++.+.|.++|+++++ |+.|+..++.+..+.++.+|
T Consensus 282 ~~~~~vqs~~~~ek~v~v~~d~~~ln~~~s~~~~~kl~~~~~~-p~l~~t~~l~rl~~S~q~dep~~~~~k~~~~s~t~~ 360 (825)
T KOG0267|consen 282 MDGAVVQSNSHKEKVVAVGRDPQDLNAFSSKVNLSKLEDSTYV-PLLKETKSLGRLSVSYQTDEPLDKSTKPHRRSSTSQ 360 (825)
T ss_pred cccceeeecCCcccccccccCcccccccccccccccccccccc-ceeccccchhccccccccCCCcccCCCCcccccccc
Confidence 001223344555555555566666666666677888888777 788899999999887 99999888877655554444
Q ss_pred CC-------------------CcccccccccCCCCCCCCCCccccCCCCCc-ccccc---ccccccccccccccCCCCCc
Q 006939 190 NS-------------------EPAKESKVLSSTGSVPGTPQRVNLNMGSKT-SVVNS---TAVVSKRTSTRANTASNVPI 246 (625)
Q Consensus 190 ~~-------------------~~~~~~~~~~~~~~~~~tp~r~~~~~~p~~-~~~~~---~~~~~~~~~~~~~~~~~~~~ 246 (625)
|. +..+..+.+.+++..+..|+|....+.++. +++++ +++.++...++++++.+.+.
T Consensus 361 ~s~~~~~~s~P~~r~~s~~~~di~~~s~~lss~e~~~~~P~r~s~tn~~k~~sgvSs~~~rs~ts~~~~~k~n~ka~~~~ 440 (825)
T KOG0267|consen 361 NSDRSEVESKPLTRESSNLSPDIPKESRTLSSTESNSEYPHRVSPTNPVKIVSGVSSSVTRSPTSPVNPGKANPKAEIAS 440 (825)
T ss_pred cccccccccCccccccCCCCcccccccccccccccCCCCCCcccccCccccccccccccccCCCCCCCccccCccccccc
Confidence 33 233455556677778999999999877777 77766 88888888888888888655
Q ss_pred ccccccccccccCCCCccccccccccccccccccccCccCCcccccccccCCCCCCCccccccccccCCCCCcccccccc
Q 006939 247 LNKSDIVPVIVPRTNTRFEQAVESRKDIDVIGRTMPFSLQSKATDSRKFQNSGDEVDQPAVSVLCENTGSKATEVSSVAD 326 (625)
Q Consensus 247 ~~~~~~~p~~~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (625)
. ..|+.||+.+ ..+..+++.++....+..+|++|.+.++.+.++| ++.++++..++.. ..+++.+.+.++.-++.
T Consensus 441 ~-e~~~~~v~~~-~~p~~~q~~Esp~~~~~~arttP~s~~P~~~~~r--~~~rs~~~~~~st-~~~rtssspvmpv~lp~ 515 (825)
T KOG0267|consen 441 V-EQDNNPVIQD-PLPTIEQATESPVPSTRIARTTPASVQPIALNSR--SNSRSDPPPPTST-VPERTSSSPVMPVILPQ 515 (825)
T ss_pred c-ccccccccCC-CcccccccccCccccccccccCCccccccccccc--ccCCCCCCCcccc-cccccccCCccccccCC
Confidence 4 7788999988 7788889999999999999999999999999999 7889998877744 34778888888888888
Q ss_pred cc--ccccccccccccccccccCcccceeccCCCCCCCCCCCCCCcccccccccCCCCCCCCccchhcccCccccceecc
Q 006939 327 RN--TFAAIKGSIQGVSVTERNSKEDIFTVSGKSGTMSMSESPASYEDERYDSLGHKSNRDGYAMESQKRGRMHSLVINW 404 (625)
Q Consensus 327 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~ 404 (625)
.+ .++...++.+. .++.......+-.+++++-.+.++.|...+..++.+ +..-.-++..-.++.++-.+.++++
T Consensus 516 ~s~~ty~~~~v~a~~--~a~~s~~r~~~~~~~~a~~~~~~~~~~~l~r~r~~~--pa~~~~tk~~~~~~~t~~~s~iasr 591 (825)
T KOG0267|consen 516 ASMSTYPEPPVGASS--TARTSSARILPVTFNQANNISSEEAPVTLRRQRRNS--PARVMPTKLNQSVNMTSDTSHIASR 591 (825)
T ss_pred CcccccCCCCccccC--cccccccccccccccccccccCcCCccccccccCCC--cccccccccchhhcccccccchhhh
Confidence 88 88888888887 788888888999999999999889999888887772 2222223334445668889999999
Q ss_pred cccCCCCCCCCCCCcCCCCCccccCCCCcccccccCCCcccccccCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006939 405 EKRGSSPNYDGPTSSISSGTVSTVSMPPFNAFKQRGYSSSAEKETASVSDEDATADVMEQHSQFVSSMQSRLAKLQAVYR 484 (625)
Q Consensus 405 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~~~~~~l~~~H~~~~~vl~~R~~~L~~vr~ 484 (625)
+|+..+.+..+|+....++.+++.+.++-.+..++..... |+...+..|+|+.++||..|++|++.|++||++||+||+
T Consensus 592 ~r~s~t~~~~tPa~~~~~~~mt~~et~~t~~~~q~~n~~~-ee~~~s~~eedI~e~im~~Hde~lstlqSRl~kLqiVR~ 670 (825)
T KOG0267|consen 592 HRVSPTQMLATPAVIDQVGDMTADETRPTNMQPQRDNLVQ-EEPIISDREEDIVEDIMGTHNEFLSTLQSRLTKLQIVRH 670 (825)
T ss_pred hccCccccccccceeccccccccccccccccccccccccc-cccccCcchhhhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888888888887777 887788999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHhcCCchhHHHHHHHHHhcccccchhhHHhhHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHH
Q 006939 485 YWERNDVKGAISAMQKMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIY 564 (625)
Q Consensus 485 ~W~~~dik~ai~~~~~~~D~~VlvD~L~~l~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~v~~al~~l~~i~~~F~~~I~ 564 (625)
||+++|||++|.++++|.|++|.||+|+||++|.++|+||+|..|||++..||.|++|+|+.++|++|+++++.||++|+
T Consensus 671 ~Wer~DiK~sI~s~~kl~D~sV~ADvL~Iltek~eiLtLDl~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt~I~ 750 (825)
T KOG0267|consen 671 FWERSDIKGSIGSLRKLADNSVQADVLNILTEKIEILTLDLCTQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGTVIY 750 (825)
T ss_pred HhhhhhhhHHHHHHHHhhhhhHHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCcccCccHHHHHHHHHHHHHHHHHHHhhhhhhhhhCCchhHHHHHHHHHhh
Q 006939 565 SAISASTSVGVDIEAEQRIERCNRCFIELEKVKCCLPTLMRRGGSVAKSAQELNLALQ 622 (625)
Q Consensus 565 ~~~~~~~~~gVDl~~EeR~~kc~~c~~~L~~i~~~l~~l~~~~g~~g~~a~el~~~l~ 622 (625)
++++||..+||||.+|||.++|..||.+|.+|.-.|+++++.+|..+...++++.++.
T Consensus 751 stlsAp~~VGVDi~aeer~~~~~lc~~~l~kl~~~~~s~s~~s~s~~~~~~s~~~~~~ 808 (825)
T KOG0267|consen 751 STLSAPRSVGVDIHAEERKERYSLCFVELPKLFCGLASLSKNSSSFIKKRRSLNKKGS 808 (825)
T ss_pred hhhhCCcccccccchHHHHhhhhhhhhhcchhhccccccccccccchhhhhhhccccc
Confidence 9999999999999999999999999999999999999999999999999999988654
No 2
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=100.00 E-value=8.5e-47 Score=362.60 Aligned_cols=161 Identities=45% Similarity=0.747 Sum_probs=158.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHhcCCchhHHHHHHHHH--hcccccchhhHHhhHHHHHHhhcc
Q 006939 462 MEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQKMADHTVLADVMSIVV--EKIEIVTLDICSCLLPLLTGLLES 539 (625)
Q Consensus 462 ~~~H~~~~~vl~~R~~~L~~vr~~W~~~dik~ai~~~~~~~D~~VlvD~L~~l~--~~~~~~tLd~c~~lLP~i~~LL~S 539 (625)
|++|++|+++|++|+++|++||++|++||+|+||+|+++|+|++|+||+|++|+ ++++.||||+|+++||+|+.||+|
T Consensus 1 ~~~H~~~~~vL~~R~~~L~~v~~~W~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~S 80 (164)
T PF13925_consen 1 SKGHDTMISVLQSRLTNLQVVRTFWRRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQS 80 (164)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhcc-CCCcccCccHHHHHHHHHHHHHHHHHHHhhhhhhhhhCCchhHHHHHHH
Q 006939 540 DMDRHLSISLDILLKLVRTFGSMIYSAISA-STSVGVDIEAEQRIERCNRCFIELEKVKCCLPTLMRRGGSVAKSAQELN 618 (625)
Q Consensus 540 k~E~~v~~al~~l~~i~~~F~~~I~~~~~~-~~~~gVDl~~EeR~~kc~~c~~~L~~i~~~l~~l~~~~g~~g~~a~el~ 618 (625)
|||+|+.+||++|++|+++||++|++++++ ++++|||+++|||++||+.||.+|++|++.++.+++++|++|+.||||+
T Consensus 81 k~E~~i~~aL~~L~~i~~~f~~~I~~~~~~~~~~~gVDl~~EeR~~kc~~c~~~L~~i~~~l~~l~~~~g~~g~~a~el~ 160 (164)
T PF13925_consen 81 KYESYISVALEMLRSILKKFGPVIRSNLSAPSPSIGVDLSAEERMEKCQECYQQLRKIVQILKSLARRSGEVGSLARELN 160 (164)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999999999999999999999999996 5889999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 006939 619 LALQ 622 (625)
Q Consensus 619 ~~l~ 622 (625)
+.||
T Consensus 161 ~~l~ 164 (164)
T PF13925_consen 161 LELQ 164 (164)
T ss_pred HhcC
Confidence 9987
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=1.5e-16 Score=167.01 Aligned_cols=121 Identities=22% Similarity=0.271 Sum_probs=113.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|+|++|+|+|.|.+-++||++++..+...+||..+|++++|+|||.+++||+.| .-+|||+++|+|+-.+.+|...|..
T Consensus 271 PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~ 350 (459)
T KOG0272|consen 271 PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILS 350 (459)
T ss_pred CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceee
Confidence 899999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCcccc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSA 128 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~ 128 (625)
+.| |+|++|++|+.|++++|||++ ....++++.+|+.-+...
T Consensus 351 V~fsPNGy~lATgs~Dnt~kVWDLR-------~r~~ly~ipAH~nlVS~V 393 (459)
T KOG0272|consen 351 VAFSPNGYHLATGSSDNTCKVWDLR-------MRSELYTIPAHSNLVSQV 393 (459)
T ss_pred EeECCCceEEeecCCCCcEEEeeec-------ccccceecccccchhhhe
Confidence 999 899999999999999999999 344578888998876543
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.58 E-value=3.9e-15 Score=156.45 Aligned_cols=125 Identities=19% Similarity=0.240 Sum_probs=115.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|||.+++||+.|..-+|||+++|.+|..+.+|...|..|.|+|+|..+++|+.| +++|||++...+..++..|.+.|..
T Consensus 313 ~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~ 392 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQ 392 (459)
T ss_pred CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhh
Confidence 699999999999999999999999999999999999999999999999999999 9999999998999999999999999
Q ss_pred EEe-c-CCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccccCc
Q 006939 80 LNV-H-EGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGNL 132 (625)
Q Consensus 80 l~~-~-dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~~~~ 132 (625)
+.+ + .|++|++++.|+++++|... ....+..+.||.+.+.+..+..
T Consensus 393 Vk~~p~~g~fL~TasyD~t~kiWs~~-------~~~~~ksLaGHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 393 VKYSPQEGYFLVTASYDNTVKIWSTR-------TWSPLKSLAGHEGKVISLDISP 440 (459)
T ss_pred eEecccCCeEEEEcccCcceeeecCC-------CcccchhhcCCccceEEEEecc
Confidence 998 4 89999999999999999877 6678889999999987765544
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=9.7e-15 Score=151.91 Aligned_cols=122 Identities=21% Similarity=0.333 Sum_probs=110.5
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeE-EEEeccCCcee
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH-DAVDVGWSRLS 78 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i-~t~~~~~s~v~ 78 (625)
|+|..|+||+-|.|++|||+.+...+.++++|..=|.|++|+|||..|++|+.| +|++||..+|+++ +.+..|...|.
T Consensus 125 p~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It 204 (480)
T KOG0271|consen 125 PTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWIT 204 (480)
T ss_pred CCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccccee
Confidence 789999999999999999999999999999999999999999999999999999 9999999998875 66777777788
Q ss_pred EEEe------cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 79 DLNV------HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 79 ~l~~------~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
.+++ +.+++|++++.||.|+|||+. .+..+..+.||+..+.+.-
T Consensus 205 ~Lawep~hl~p~~r~las~skDg~vrIWd~~-------~~~~~~~lsgHT~~VTCvr 254 (480)
T KOG0271|consen 205 ALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-------LGTCVRTLSGHTASVTCVR 254 (480)
T ss_pred EEeecccccCCCccceecccCCCCEEEEEcc-------CceEEEEeccCccceEEEE
Confidence 8776 367899999999999999998 5678889999999987754
No 6
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.56 E-value=1.4e-14 Score=149.59 Aligned_cols=124 Identities=23% Similarity=0.240 Sum_probs=114.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|-.++|+||+.|++++|||+.+|++..++.||-..|+.++|++-..|+|+++.| .|++||++..+.++-+.+|.+.|.+
T Consensus 161 P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~ 240 (460)
T KOG0285|consen 161 PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYC 240 (460)
T ss_pred CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEE
Confidence 567899999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccccC
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGN 131 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~~~ 131 (625)
+.. |.-..|++|+.|.+++|||++ ....+..+.||...+....-+
T Consensus 241 L~lhPTldvl~t~grDst~RvWDiR-------tr~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 241 LDLHPTLDVLVTGGRDSTIRVWDIR-------TRASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred EeccccceeEEecCCcceEEEeeec-------ccceEEEecCCCCcceeEEee
Confidence 988 577889999999999999999 668899999999988665433
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.52 E-value=3.1e-14 Score=159.16 Aligned_cols=103 Identities=22% Similarity=0.372 Sum_probs=99.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
||+.++||||.|+||++||+.+|..++.|.||.++|.+++|+|+|++|++|+.| .|++||+.+++.+..+..|.+.+..
T Consensus 545 PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~S 624 (707)
T KOG0263|consen 545 PNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYS 624 (707)
T ss_pred CcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeE
Confidence 889999999999999999999999999999999999999999999999999999 9999999999999888888899999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.| .+|.+|++|+.|+.|++||+.
T Consensus 625 lsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 625 LSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred EEEecCCCEEEecCCCCeEEEEEch
Confidence 998 799999999999999999987
No 8
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=5.9e-14 Score=155.71 Aligned_cols=122 Identities=22% Similarity=0.378 Sum_probs=113.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|+..+|||||.|++.+||+++.....+++.||+.+|.|+.|+|...++++++.| +||+|.+.++.|+.++.+|...|..
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlr 552 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLR 552 (775)
T ss_pred CCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEe
Confidence 688999999999999999999999999999999999999999999999999999 9999999999999999999998888
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
..| .+|+.|++++.||.+++|++. ...+..++.+|.+.+-+..
T Consensus 553 a~F~~~~~qliS~~adGliKlWnik-------t~eC~~tlD~H~DrvWaL~ 596 (775)
T KOG0319|consen 553 ASFIRNGKQLISAGADGLIKLWNIK-------TNECEMTLDAHNDRVWALS 596 (775)
T ss_pred eeeeeCCcEEEeccCCCcEEEEecc-------chhhhhhhhhccceeEEEe
Confidence 887 799999999999999999998 6778888999988876554
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.50 E-value=4.3e-14 Score=157.98 Aligned_cols=119 Identities=15% Similarity=0.321 Sum_probs=111.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|-|.+|||||.|+|.++|.......++.+.+|.+.|.|+.|||++.++++|+.| ++|+||+.+|.+.+.|.+|.++|..
T Consensus 503 P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~a 582 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTA 582 (707)
T ss_pred CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEE
Confidence 679999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCcc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKS 126 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~ 126 (625)
+.+ ++|++|++|+.|+.|.+||+. .+..+..+.+|+..+-
T Consensus 583 l~~Sp~Gr~LaSg~ed~~I~iWDl~-------~~~~v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 583 LAFSPCGRYLASGDEDGLIKIWDLA-------NGSLVKQLKGHTGTIY 623 (707)
T ss_pred EEEcCCCceEeecccCCcEEEEEcC-------CCcchhhhhcccCcee
Confidence 999 899999999999999999998 5667778888855543
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.49 E-value=2.4e-13 Score=137.09 Aligned_cols=122 Identities=20% Similarity=0.256 Sum_probs=101.5
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEecc-CCcee
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG-WSRLS 78 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~-~s~v~ 78 (625)
+||+++++||.|+++++||+.+|+..+.|.+|+..|.+++|++|.+.+++|+.| +|++|+...+......... ..-|.
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 689999999999999999999999999999999999999999999999999999 9999998854444333332 56677
Q ss_pred EEEe-cC--CCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 79 DLNV-HE--GKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 79 ~l~~-~d--g~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
++.| |+ .-++++++.|++|++||++ .-+....+.||+..+....
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~-------~~~l~~~~~gh~~~v~t~~ 199 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLR-------NCQLRTTFIGHSGYVNTVT 199 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccC-------CcchhhccccccccEEEEE
Confidence 8888 54 6789999999999999998 3344456677777766544
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.49 E-value=3.7e-13 Score=149.64 Aligned_cols=103 Identities=23% Similarity=0.479 Sum_probs=98.7
Q ss_pred CCCCEEEEEeCCCeEEEEEC-CCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCcee
Q 006939 1 MSGYFHFSGSADRTVKFWDL-ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLS 78 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL-~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~ 78 (625)
|||+++++|+.|++|+|||+ ..+.+++++.+|...|++++|+|+|+.+++|+.| +|+|||+++++|...+..|...+.
T Consensus 213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 78999999999999999999 5668999999999999999999999999999999 999999999999999999999999
Q ss_pred EEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+.| +++.+|++++.|+.|++||+.
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECC
Confidence 9999 799999999999999999998
No 12
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=8.7e-12 Score=138.43 Aligned_cols=102 Identities=21% Similarity=0.401 Sum_probs=94.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
++.+|+.|+.||+||+|||+.++.++++.||...+.++.|+|-|.++++|+.| .+++||.+-.-|..++..|...+..+
T Consensus 81 ~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 81 SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEE
Confidence 57789999999999999999999999999999999999999999999999999 89999999888888888877777778
Q ss_pred Ee-cCCCEEEEeeCCCeEEEEecc
Q 006939 81 NV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 81 ~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.| |+|++++.|+.|..++|||..
T Consensus 161 ~lsP~Gr~v~~g~ed~tvki~d~~ 184 (825)
T KOG0267|consen 161 RLSPDGRWVASGGEDNTVKIWDLT 184 (825)
T ss_pred eecCCCceeeccCCcceeeeeccc
Confidence 88 899999999999999999994
No 13
>PTZ00421 coronin; Provisional
Probab=99.43 E-value=2.6e-12 Score=143.82 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=101.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCC-------eEEEEeCCCCCCeEEEEEcCCC-CEEEEEeCC-cEEEEeCCCCeeEEEEec
Q 006939 2 SGYFHFSGSADRTVKFWDLETF-------ELIGSAGPETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEPIRCHDAVDV 72 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg-------~~i~tl~~h~~~V~sv~fsPdg-~~LvSgs~D-sIrVWdl~sg~~i~t~~~ 72 (625)
++.+|++|+.|++|++||+.++ +.+..+.+|...|.+++|+|++ .+|++|+.| +|+|||++++.+...+..
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 7889999999999999999765 3567889999999999999985 689999999 999999999998888888
Q ss_pred cCCceeEEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCC
Q 006939 73 GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSES 124 (625)
Q Consensus 73 ~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~ 124 (625)
+...+.++.| +++.+|++++.|+.|++||++ .+..+..+.+|...
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r-------sg~~v~tl~~H~~~ 212 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR-------DGTIVSSVEAHASA 212 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECC-------CCcEEEEEecCCCC
Confidence 8888999998 799999999999999999998 34455666777654
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.42 E-value=1.6e-12 Score=131.81 Aligned_cols=123 Identities=17% Similarity=0.299 Sum_probs=109.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEec--cCCcee
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV--GWSRLS 78 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~--~~s~v~ 78 (625)
+++.|++|+.|++.+|||++.+.+..+|.+|.+.|.+|+|+|+|.-|++|++| ++++||++..+.+.++.. -...+.
T Consensus 198 ~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 198 DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence 78999999999999999999999999999999999999999999999999999 999999999888777653 234567
Q ss_pred EEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccccC
Q 006939 79 DLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGN 131 (625)
Q Consensus 79 ~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~~~ 131 (625)
.+.| -.|++|.+|+.|..+.+||.- .+..+..|.||...+......
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtl-------k~e~vg~L~GHeNRvScl~~s 324 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTL-------KGERVGVLAGHENRVSCLGVS 324 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeecc-------ccceEEEeeccCCeeEEEEEC
Confidence 7777 589999999999999999976 567788999999998776533
No 15
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.42 E-value=6.1e-13 Score=138.67 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=111.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEE-EEeCCCCCCeEEEEEcC-----CCCEEEEEeCC-cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELI-GSAGPETSGVRCLTFNP-----DGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i-~tl~~h~~~V~sv~fsP-----dg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~ 73 (625)
|||+.||+|+.|++|++||..+|+++ ..+.+|...|.+++|.| .++.|++++.| +++|||+..+.|+..+.+|
T Consensus 167 PDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH 246 (480)
T KOG0271|consen 167 PDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH 246 (480)
T ss_pred CCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC
Confidence 89999999999999999999999886 46899999999999976 46789999999 9999999999999999999
Q ss_pred CCceeEEEecCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 74 WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 74 ~s~v~~l~~~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
...|.++.+....++.+|+.|++|++|+.. .+..+..+.||.-|+....
T Consensus 247 T~~VTCvrwGG~gliySgS~DrtIkvw~a~-------dG~~~r~lkGHahwvN~la 295 (480)
T KOG0271|consen 247 TASVTCVRWGGEGLIYSGSQDRTIKVWRAL-------DGKLCRELKGHAHWVNHLA 295 (480)
T ss_pred ccceEEEEEcCCceEEecCCCceEEEEEcc-------chhHHHhhcccchheeeee
Confidence 999999999777899999999999999887 5778889999999987654
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.40 E-value=2.4e-12 Score=143.20 Aligned_cols=122 Identities=25% Similarity=0.424 Sum_probs=113.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCe--EEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeC-CCCeeEEEEeccCCc
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFE--LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW-EPIRCHDAVDVGWSR 76 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~--~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl-~sg~~i~t~~~~~s~ 76 (625)
|||.+|++++.|+++++|++.+++ +++.+.+|...|++++|+|||.++++|+.| +|++||+ ..+.++.++.+|...
T Consensus 169 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~ 248 (456)
T KOG0266|consen 169 PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY 248 (456)
T ss_pred CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc
Confidence 689999999999999999998888 788889999999999999999999999999 9999999 667999999999999
Q ss_pred eeEEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 77 LSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 77 v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
+.++.| +.++++++|+.|++|+|||+. .+.....+.+|++.+....
T Consensus 249 v~~~~f~p~g~~i~Sgs~D~tvriWd~~-------~~~~~~~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 249 VTSVAFSPDGNLLVSGSDDGTVRIWDVR-------TGECVRKLKGHSDGISGLA 295 (456)
T ss_pred eEEEEecCCCCEEEEecCCCcEEEEecc-------CCeEEEeeeccCCceEEEE
Confidence 999999 788999999999999999998 5788999999999887654
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.37 E-value=1.9e-12 Score=134.15 Aligned_cols=123 Identities=19% Similarity=0.265 Sum_probs=110.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 81 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~ 81 (625)
..++++++.|+.|+-|||+..+.|+.|.||-++|+|+..+|.-..|++|+.| +++|||+++...+.++.+|...|..+.
T Consensus 205 HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 205 HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence 4589999999999999999999999999999999999999999999999999 999999999999999999999999988
Q ss_pred e-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccccCc
Q 006939 82 V-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGNL 132 (625)
Q Consensus 82 ~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~~~~ 132 (625)
+ +.+-.+++|+.|++|++||+. .+.....+..|...+++....+
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~-------agkt~~tlt~hkksvral~lhP 329 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLR-------AGKTMITLTHHKKSVRALCLHP 329 (460)
T ss_pred eecCCCceEEecCCceEEEeeec-------cCceeEeeecccceeeEEecCC
Confidence 7 445567899999999999998 6777788888888887776553
No 18
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.37 E-value=4.4e-13 Score=138.16 Aligned_cols=123 Identities=17% Similarity=0.312 Sum_probs=102.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
|.++++++|.|+|+++|++.++++++++.+|..+|.|+.+ .|+++++|+.| +|++||.+.|.|++.+.+|-..+.++
T Consensus 329 d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRci 406 (499)
T KOG0281|consen 329 DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 406 (499)
T ss_pred ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhhe
Confidence 5689999999999999999999999999999999999987 68999999999 99999999999999999998888999
Q ss_pred EecCCCEEEEeeCCCeEEEEeccCC--ccccccccceeEEeccCCCccc
Q 006939 81 NVHEGKLLGCSYNQSCVGVWVVDIS--RIEPYTIGSVTRVNGLSESKSS 127 (625)
Q Consensus 81 ~~~dg~lL~sg~~Dg~V~vWdv~~~--~~~~~~~~~i~~l~gHs~~v~~ 127 (625)
.| +.+.+++|..||.|++||+... .-.+.....+.++..|++.+..
T Consensus 407 RF-d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr 454 (499)
T KOG0281|consen 407 RF-DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR 454 (499)
T ss_pred ee-cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEE
Confidence 98 5667889999999999998721 1112223344455555555443
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.35 E-value=5.3e-12 Score=131.12 Aligned_cols=99 Identities=24% Similarity=0.419 Sum_probs=92.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 81 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~ 81 (625)
|+++++||.|++||+||+.+|.|+.++.+|..-|+.++|+|.|++|+|+.+| +++|||+.+++|..++..+...+..+.
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD 383 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence 6799999999999999999999999999999999999999999999999999 999999999999999988888888888
Q ss_pred ec-CCCEEEEeeCCCeEEEEe
Q 006939 82 VH-EGKLLGCSYNQSCVGVWV 101 (625)
Q Consensus 82 ~~-dg~lL~sg~~Dg~V~vWd 101 (625)
|| +.-++++|+-|..+++|.
T Consensus 384 fh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cCCCCceEEeccccceeeeee
Confidence 85 455889999999999995
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.34 E-value=7e-12 Score=127.23 Aligned_cols=102 Identities=21% Similarity=0.346 Sum_probs=97.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcC-CCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP-DGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsP-dg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|...|+|||-|.|.-+||+++|+.+..|.+|.+.|.++.+.| ++++|++|+-| +.++||++.+.|.++|.+|-+-|+.
T Consensus 155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINs 234 (343)
T KOG0286|consen 155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINS 234 (343)
T ss_pred CCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccce
Confidence 456788999999999999999999999999999999999999 99999999999 9999999999999999999999999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.| |+|.-+++|++|++.++||++
T Consensus 235 v~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 235 VRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred EEEccCCCeeeecCCCceeEEEeec
Confidence 988 899999999999999999998
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.34 E-value=6.6e-12 Score=139.84 Aligned_cols=103 Identities=21% Similarity=0.322 Sum_probs=91.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC----------------
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP---------------- 63 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s---------------- 63 (625)
|||+++|||+.|+.||+||...|-|+.++..|+++|..+.|+..|+.+++.+.| +++.||+.-
T Consensus 360 pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfs 439 (893)
T KOG0291|consen 360 PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFS 439 (893)
T ss_pred CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeee
Confidence 899999999999999999999999999999999999999999999988888777 888888643
Q ss_pred ----------------------------CeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 64 ----------------------------IRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 64 ----------------------------g~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|+.++++.+|-++|..+.| +.+.+|+++++|.+|++||+=
T Consensus 440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 3334455778888998888 789999999999999999975
No 22
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=5.3e-12 Score=142.31 Aligned_cols=103 Identities=16% Similarity=0.273 Sum_probs=99.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|++.+|+||+.|..|++|++.+..|+.++.||-+.|+.+.||+.-.|++|+++| +|+||+|.+..|+.++.+|-..|.+
T Consensus 61 ~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMc 140 (1202)
T KOG0292|consen 61 PTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMC 140 (1202)
T ss_pred CCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEe
Confidence 678899999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+| +...++++++-|.+|+|||+.
T Consensus 141 AqFhptEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 141 AQFHPTEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred eccCCccceEEEecccceEEEEeec
Confidence 999 568899999999999999998
No 23
>PTZ00420 coronin; Provisional
Probab=99.30 E-value=4.8e-11 Score=135.13 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=94.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCe--------EEEEeCCCCCCeEEEEEcCCCCEE-EEEeCC-cEEEEeCCCCeeEEEEec
Q 006939 3 GYFHFSGSADRTVKFWDLETFE--------LIGSAGPETSGVRCLTFNPDGRTL-LCGLHE-SLKVFSWEPIRCHDAVDV 72 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~--------~i~tl~~h~~~V~sv~fsPdg~~L-vSgs~D-sIrVWdl~sg~~i~t~~~ 72 (625)
+.+||||+.|++|+|||+.++. .+..+.+|...|.+++|+|++..+ ++|+.| +|+|||++.+.....+..
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~ 166 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM 166 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 7899999999999999998642 345678999999999999998764 688888 999999999887665543
Q ss_pred cCCceeEEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCc
Q 006939 73 GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESK 125 (625)
Q Consensus 73 ~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v 125 (625)
...+..+.| ++|.+|++++.|+.|++||++ .+..+..+.+|...+
T Consensus 167 -~~~V~SlswspdG~lLat~s~D~~IrIwD~R-------sg~~i~tl~gH~g~~ 212 (568)
T PTZ00420 167 -PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR-------KQEIASSFHIHDGGK 212 (568)
T ss_pred -CCcEEEEEECCCCCEEEEEecCCEEEEEECC-------CCcEEEEEecccCCc
Confidence 356888888 799999999999999999998 445566777887654
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.30 E-value=4.6e-12 Score=133.10 Aligned_cols=121 Identities=14% Similarity=0.190 Sum_probs=106.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|+...|+|+|.|++|+|||....+.-+.+.+|...|.++.|||.-.++++|+.| .|++||.++|.|+.++..|...|..
T Consensus 190 pnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~ 269 (464)
T KOG0284|consen 190 PNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLA 269 (464)
T ss_pred CCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEE
Confidence 567789999999999999999888888889999999999999999999999999 8999999999999999999999999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCcccc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSA 128 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~ 128 (625)
+.| +++.+|++++.|..+++||++ .-..+..+.+|...+...
T Consensus 270 ~~f~~n~N~Llt~skD~~~kv~DiR-------~mkEl~~~r~Hkkdv~~~ 312 (464)
T KOG0284|consen 270 VKFNPNGNWLLTGSKDQSCKVFDIR-------TMKELFTYRGHKKDVTSL 312 (464)
T ss_pred EEEcCCCCeeEEccCCceEEEEehh-------HhHHHHHhhcchhhheee
Confidence 999 788999999999999999998 233445555665555443
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.28 E-value=2e-11 Score=130.23 Aligned_cols=103 Identities=17% Similarity=0.302 Sum_probs=97.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCC---------EEEEEeCC-cEEEEeCCCCeeEEEE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR---------TLLCGLHE-SLKVFSWEPIRCHDAV 70 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~---------~LvSgs~D-sIrVWdl~sg~~i~t~ 70 (625)
|.|.+|+|+|.|+|++||......+.+.+..|...|+.+.|+|+|. .+++++.| ++++||...+.|+.++
T Consensus 369 ~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f 448 (524)
T KOG0273|consen 369 PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL 448 (524)
T ss_pred CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee
Confidence 5799999999999999999999999999999999999999999874 67788888 9999999999999999
Q ss_pred eccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 71 DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 71 ~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.-|..+|+++.| |+|+++++|+.|++|.+|+..
T Consensus 449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred ccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 999999999999 899999999999999999988
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.27 E-value=4.6e-12 Score=130.76 Aligned_cols=119 Identities=20% Similarity=0.327 Sum_probs=88.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
|...+++|..|.||+|||..+-.|...+.||++.|.|+.| |.+.+++|+.| +|+||||++|+++.++-.|-..+..+
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhl 283 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHL 283 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEE
Confidence 4567899999999999999999999999999999999988 67899999999 99999999998865543333333333
Q ss_pred Eec------------------------------------------CCCEEEEeeCCCeEEEEeccCCccccccccceeEE
Q 006939 81 NVH------------------------------------------EGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRV 118 (625)
Q Consensus 81 ~~~------------------------------------------dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l 118 (625)
.|. +.+++++++.|.+|++|++. +...+.++
T Consensus 284 rf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~s-------t~efvRtl 356 (499)
T KOG0281|consen 284 RFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTS-------TCEFVRTL 356 (499)
T ss_pred EEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEecc-------ceeeehhh
Confidence 332 34455555555555555555 45667778
Q ss_pred eccCCCccccc
Q 006939 119 NGLSESKSSAS 129 (625)
Q Consensus 119 ~gHs~~v~~~~ 129 (625)
.||..++-+..
T Consensus 357 ~gHkRGIAClQ 367 (499)
T KOG0281|consen 357 NGHKRGIACLQ 367 (499)
T ss_pred hcccccceehh
Confidence 88877765443
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.27 E-value=4e-11 Score=122.19 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=91.9
Q ss_pred CCCCEEEEEeCCCeEEEEEC-CCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCcee
Q 006939 1 MSGYFHFSGSADRTVKFWDL-ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLS 78 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL-~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~ 78 (625)
|+|.+||||+.|+.|.||+. ...+-...+++|.+.|..+.|.+|+..+++++.| +++.||.++|+++..+..|...++
T Consensus 57 P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vN 136 (338)
T KOG0265|consen 57 PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVN 136 (338)
T ss_pred CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceee
Confidence 79999999999999999995 3445577889999999999999999999999999 999999999999999988888887
Q ss_pred EEEe--cCCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNV--HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~--~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+.. .+..++.++++|+++++||++
T Consensus 137 s~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 137 SLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred ecCccccCCeEEEecCCCceEEEEeec
Confidence 7775 245567888999999999999
No 28
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.26 E-value=4.5e-11 Score=134.82 Aligned_cols=117 Identities=27% Similarity=0.317 Sum_probs=106.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 81 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~ 81 (625)
+.+|++|+.|+++++||+.+|+|.+++.+|++.|+++.. ....+++|+.| +|+||++.++.++.++.+|...|.++.
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 678999999999999999999999999999999999987 45577888999 999999999999999988889999998
Q ss_pred ecCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 82 VHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 82 ~~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
.. +.++++|+.|+.|++||+. .+..+..+.||+.++....
T Consensus 339 ~~-~~~lvsgs~d~~v~VW~~~-------~~~cl~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 339 LD-EPLLVSGSYDGTVKVWDPR-------TGKCLKSLSGHTGRVYSLI 378 (537)
T ss_pred ec-CCEEEEEecCceEEEEEhh-------hceeeeeecCCcceEEEEE
Confidence 75 7899999999999999998 7889999999999998754
No 29
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.4e-11 Score=138.92 Aligned_cols=125 Identities=14% Similarity=0.237 Sum_probs=112.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|.-.+++++-..|.|.+||++.+.++..+..|.++|+.|+|||++.+|+||++| .|+||++...+|+.++.+|-..|..
T Consensus 19 P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt 98 (1202)
T KOG0292|consen 19 PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRT 98 (1202)
T ss_pred CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEE
Confidence 456788999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccccCc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGNL 132 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~~~~ 132 (625)
++| |+--+++++++|.+|+||++. ....+..+.||.-.+-+..-.+
T Consensus 99 ~~FHheyPWIlSASDDQTIrIWNwq-------sr~~iavltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 99 VFFHHEYPWILSASDDQTIRIWNWQ-------SRKCIAVLTGHNHYVMCAQFHP 145 (1202)
T ss_pred eeccCCCceEEEccCCCeEEEEecc-------CCceEEEEecCceEEEeeccCC
Confidence 999 466689999999999999998 6678888899887776554333
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.25 E-value=3.8e-11 Score=119.73 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=93.2
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCCCee--EEEEeccCCceeEEE
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRC--HDAVDVGWSRLSDLN 81 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~--i~t~~~~~s~v~~l~ 81 (625)
-+|+|+|.|.|||+|.+.+|.|.+++....+.|..+.+.||++.|+.|+.-.||+||++++.. +.++.++...|..+.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 478999999999999999999999999888899999999999999999888999999998764 678888888999999
Q ss_pred e-cCCCEEEEeeCCCeEEEEecc
Q 006939 82 V-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 82 ~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
| .+|+++.+|+.||+++|||++
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR 113 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLR 113 (311)
T ss_pred EeecCeEEEecCCCceEEEEecc
Confidence 9 699999999999999999998
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=5.9e-11 Score=130.12 Aligned_cols=119 Identities=13% Similarity=0.285 Sum_probs=108.8
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC-CeeEEEEeccCCceeEEE
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP-IRCHDAVDVGWSRLSDLN 81 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s-g~~i~t~~~~~s~v~~l~ 81 (625)
+++++|+.|..|++|++.|++.+++++.|...|+||+.||.-.+++++++| +|++|||+. ..|.+++.+|...|.++.
T Consensus 68 nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 68 NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 689999999999999999999999999999999999999999999999999 999999986 578899999999999999
Q ss_pred e-c-CCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 82 V-H-EGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 82 ~-~-dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
| | |...+++++-|++|+||.+. ......++.||..++.+..
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslg-------s~~~nfTl~gHekGVN~Vd 190 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLG-------SPHPNFTLEGHEKGVNCVD 190 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcC-------CCCCceeeeccccCcceEE
Confidence 9 4 78889999999999999998 4566778889988887754
No 32
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.24 E-value=1.5e-11 Score=131.65 Aligned_cols=101 Identities=17% Similarity=0.252 Sum_probs=91.9
Q ss_pred CCCEEEEEeCCCeEEEEECCC-CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 2 SGYFHFSGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~t-g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
.+.+|++|+.|+.|+||++.. +.|+++|.+|..+|+.++|+.+|..|+|++.| .|++||.++|+|...+..+. .+.+
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~-~~~c 304 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK-VPTC 304 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC-Ccee
Confidence 578999999999999999876 89999999999999999999999999999999 99999999999999887653 3567
Q ss_pred EEe-cCC-CEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEG-KLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg-~lL~sg~~Dg~V~vWdv~ 103 (625)
+.| +++ ..+++|+.|+.|+.||++
T Consensus 305 vkf~pd~~n~fl~G~sd~ki~~wDiR 330 (503)
T KOG0282|consen 305 VKFHPDNQNIFLVGGSDKKIRQWDIR 330 (503)
T ss_pred eecCCCCCcEEEEecCCCcEEEEecc
Confidence 777 455 788999999999999999
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=4.1e-11 Score=124.58 Aligned_cols=126 Identities=18% Similarity=0.232 Sum_probs=106.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|.|.+++|++.|.+|+.|++.+|-|+.++.+|..=|+-++.+.||.++++|+.| +|++|-+.++.|...+..|...+-+
T Consensus 203 P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEc 282 (406)
T KOG0295|consen 203 PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVEC 282 (406)
T ss_pred ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEE
Confidence 568899999999999999999999999999999999999999999999999999 9999999998764444333333333
Q ss_pred EEe-----------c-----CCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccccCcC
Q 006939 80 LNV-----------H-----EGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGNLS 133 (625)
Q Consensus 80 l~~-----------~-----dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~~~~~ 133 (625)
+.+ . .++++++++.|++|++||+. .+..+.++.||-+|+++....+.
T Consensus 283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~-------tg~cL~tL~ghdnwVr~~af~p~ 345 (406)
T KOG0295|consen 283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS-------TGMCLFTLVGHDNWVRGVAFSPG 345 (406)
T ss_pred EEecccccCcchhhccCCCCCccEEEeecccceEEEEecc-------CCeEEEEEecccceeeeeEEcCC
Confidence 322 1 24699999999999999999 78999999999999998776643
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=4.8e-11 Score=118.20 Aligned_cols=108 Identities=16% Similarity=0.266 Sum_probs=100.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
||++.++++.|++|++|+...|.+|+++.+|...|..++.+.|..-|++|+.| .+.+||+++|+..+.+..|..+++.+
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV 107 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTV 107 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEE
Confidence 79999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred Ee-cCCCEEEEeeCCCeEEEEeccCCcccc
Q 006939 81 NV-HEGKLLGCSYNQSCVGVWVVDISRIEP 109 (625)
Q Consensus 81 ~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~ 109 (625)
.| .+...+++|+.|..+++||-+....+|
T Consensus 108 ~fNeesSVv~SgsfD~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 108 RFNEESSVVASGSFDSSVRLWDCRSRSFEP 137 (307)
T ss_pred EecCcceEEEeccccceeEEEEcccCCCCc
Confidence 99 467788999999999999998554443
No 35
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=4e-12 Score=130.09 Aligned_cols=102 Identities=22% Similarity=0.400 Sum_probs=96.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeC-CCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAG-PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~-~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|.+.||+|+.||.|++|.+++|.|++.+. .|+.+|.|+.|+.|+..+++++.| ++++..+.+|+|+.-+.+|.+.+..
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 56789999999999999999999999996 899999999999999999999999 9999999999999999999999999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..| ++|.++++++.||+|++|+..
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~K 378 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGK 378 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCc
Confidence 988 799999999999999999876
No 36
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.22 E-value=6.8e-11 Score=119.53 Aligned_cols=100 Identities=18% Similarity=0.320 Sum_probs=90.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 81 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~ 81 (625)
..+|+++|.|++||+||+++.+....+-+|++.+..+.++|||..+++|+.| .+.+||++.++++.++. +...|..+.
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~ 240 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLC 240 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEE
Confidence 7899999999999999999999999999999999999999999999999999 99999999999977765 557789999
Q ss_pred ecCCCEEEEeeCCCeEEEEecc
Q 006939 82 VHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 82 ~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|...++.+|...+..|+|||++
T Consensus 241 fspnrywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 241 FSPNRYWLCAATATSIKIWDLE 262 (315)
T ss_pred ecCCceeEeeccCCceEEEecc
Confidence 9666677777777889999998
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=4.4e-11 Score=131.05 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=107.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-CeEEEEeCCCCCCeEEEEEcC-CCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCce
Q 006939 1 MSGYFHFSGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNP-DGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRL 77 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~t-g~~i~tl~~h~~~V~sv~fsP-dg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v 77 (625)
|...+++|+|.|-+||+||.+. ..|..+++||.-.|.+++|+| |.+.++|++.| +|+||.+....+..++.+|...|
T Consensus 107 Pt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGV 186 (794)
T KOG0276|consen 107 PTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGV 186 (794)
T ss_pred CCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCc
Confidence 6677899999999999999975 467889999999999999999 67889999999 99999999989999999999889
Q ss_pred eEEEecCC---CEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 78 SDLNVHEG---KLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 78 ~~l~~~dg---~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
+++.+..+ -+|++|++|..|+|||.. +..++++|.||+.-+....
T Consensus 187 N~Vdyy~~gdkpylIsgaDD~tiKvWDyQ-------tk~CV~TLeGHt~Nvs~v~ 234 (794)
T KOG0276|consen 187 NCVDYYTGGDKPYLISGADDLTIKVWDYQ-------TKSCVQTLEGHTNNVSFVF 234 (794)
T ss_pred ceEEeccCCCcceEEecCCCceEEEeecc-------hHHHHHHhhcccccceEEE
Confidence 99887433 399999999999999998 5678888999988877654
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.18 E-value=4.2e-10 Score=133.28 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=98.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcC-CCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP-DGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsP-dg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
++.+||+|+.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.| +|++||++++.++..+..+ ..+..
T Consensus 544 ~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 467899999999999999999999999999999999999997 78899999999 9999999999888777654 45666
Q ss_pred EEe--cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccc
Q 006939 80 LNV--HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSS 127 (625)
Q Consensus 80 l~~--~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~ 127 (625)
+.| +++.+|++|+.|+.|++||++.. ...+..+.+|...+..
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~------~~~~~~~~~h~~~V~~ 666 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNP------KLPLCTMIGHSKTVSY 666 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCC------CccceEecCCCCCEEE
Confidence 766 47899999999999999998721 1134455677665543
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=3.8e-10 Score=113.77 Aligned_cols=123 Identities=15% Similarity=0.311 Sum_probs=104.7
Q ss_pred CCEEEEEeCCCeEEEEECCC---CeEEEEe-CCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC--CeeEEEEeccCC
Q 006939 3 GYFHFSGSADRTVKFWDLET---FELIGSA-GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP--IRCHDAVDVGWS 75 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~t---g~~i~tl-~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s--g~~i~t~~~~~s 75 (625)
|.+|||||.|+.|+||+... ..|...+ .+|+..|++++|+|.|++|++|+.| ++.||.-.. .+|+.++.+|-+
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn 106 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN 106 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence 67999999999999999884 5565555 6799999999999999999999999 999998764 478899999999
Q ss_pred ceeEEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 76 RLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 76 ~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
.|.+++| .+|.+|++++.|..|-||.++ +.-+...+.-|.+|++.+....
T Consensus 107 EVK~Vaws~sG~~LATCSRDKSVWiWe~d----eddEfec~aVL~~HtqDVK~V~ 157 (312)
T KOG0645|consen 107 EVKCVAWSASGNYLATCSRDKSVWIWEID----EDDEFECIAVLQEHTQDVKHVI 157 (312)
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEEec----CCCcEEEEeeeccccccccEEE
Confidence 9999999 799999999999999999887 3334566777888888775443
No 40
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.15 E-value=4.9e-10 Score=121.16 Aligned_cols=103 Identities=16% Similarity=0.237 Sum_probs=89.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeC---CCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEE------
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAG---PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV------ 70 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~---~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~------ 70 (625)
|||.+|||++.|+++.+||-.+|+.+..+. +|.+.|+++.|+||+..+++++.| ++||||+.+.+++.++
T Consensus 200 PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v 279 (603)
T KOG0318|consen 200 PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV 279 (603)
T ss_pred CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCch
Confidence 899999999999999999999999999987 899999999999999999999999 9999999876654433
Q ss_pred -------------------------------------eccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 71 -------------------------------------DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 71 -------------------------------------~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+|...+..+.. +++++|.+|+.||.|.-|+..
T Consensus 280 ~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 280 EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 345555666666 678888888889999889887
No 41
>PTZ00421 coronin; Provisional
Probab=99.15 E-value=5.7e-10 Score=125.13 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=84.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCce-eEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRL-SDL 80 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v-~~l 80 (625)
+.+|++|+.|++|+|||+++++.+..+.+|...|.+++|+|+|.+|++|+.| .|+|||++++..+..+..|.... ..+
T Consensus 138 ~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 138 MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRC 217 (493)
T ss_pred CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence 4699999999999999999999999999999999999999999999999999 99999999999887776664432 233
Q ss_pred Ee-cCCCEEEEee----CCCeEEEEecc
Q 006939 81 NV-HEGKLLGCSY----NQSCVGVWVVD 103 (625)
Q Consensus 81 ~~-~dg~lL~sg~----~Dg~V~vWdv~ 103 (625)
.+ +++.++++++ .|+.|++||++
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 33 5555555433 47899999987
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.13 E-value=1.9e-10 Score=128.31 Aligned_cols=100 Identities=21% Similarity=0.323 Sum_probs=95.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|+.+++||+|.|+|||||.+.++.|+.++.||...|..+.|-.+|..|+||+.| -||+|++.++.|+.+++.|...+..
T Consensus 515 ~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWa 594 (775)
T KOG0319|consen 515 KNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWA 594 (775)
T ss_pred cccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEE
Confidence 467899999999999999999999999999999999999999999999999988 9999999999999999999999999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEE
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVW 100 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vW 100 (625)
+.. +...++++|+.||.|.+|
T Consensus 595 L~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 595 LSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred EeecCccceeEecCCCeEEEEe
Confidence 887 777799999999999999
No 43
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.12 E-value=3.8e-10 Score=112.66 Aligned_cols=101 Identities=16% Similarity=0.288 Sum_probs=89.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCe--EEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCce
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFE--LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRL 77 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~--~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v 77 (625)
||+..||+|+. ..||+||+.++. .+.++++|+..|.++.|..||+|.++|+.| ++||||++.-.|.+.+... ++|
T Consensus 50 pdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spV 127 (311)
T KOG0315|consen 50 PDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPV 127 (311)
T ss_pred CCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCc
Confidence 68888888875 469999999876 489999999999999999999999999999 9999999998887777655 788
Q ss_pred eEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 78 SDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 78 ~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+.. ++...|++|..+|.|++||+.
T Consensus 128 n~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 128 NTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred ceEEecCCcceEEeecCCCcEEEEEcc
Confidence 88888 577789999999999999998
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.12 E-value=3e-10 Score=115.91 Aligned_cols=121 Identities=20% Similarity=0.267 Sum_probs=99.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEE-EEeCC-cEEEEeCCCCeeEEEEeccCCcee
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHE-SLKVFSWEPIRCHDAVDVGWSRLS 78 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~Lv-Sgs~D-sIrVWdl~sg~~i~t~~~~~s~v~ 78 (625)
+|+..++++|.|++|+.||.++|++++.+++|+.-|.++.-..-|..++ ||++| +++|||.+...+++++.... ++.
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky-qlt 178 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY-QLT 178 (338)
T ss_pred cCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce-eEE
Confidence 4889999999999999999999999999999999999887433455554 77778 99999999888877664332 244
Q ss_pred EEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 79 DLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 79 ~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
.+.| ..+..+.+|+-|+.|++||++ .....+.+.||.+.+....
T Consensus 179 Av~f~d~s~qv~sggIdn~ikvWd~r-------~~d~~~~lsGh~DtIt~ls 223 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGGIDNDIKVWDLR-------KNDGLYTLSGHADTITGLS 223 (338)
T ss_pred EEEecccccceeeccccCceeeeccc-------cCcceEEeecccCceeeEE
Confidence 5555 577789999999999999997 5677899999999987755
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.2e-09 Score=110.32 Aligned_cols=124 Identities=18% Similarity=0.261 Sum_probs=102.5
Q ss_pred CCCCEEEEEeCCCeEEEEECC--CCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC---CeeEEEEeccC
Q 006939 1 MSGYFHFSGSADRTVKFWDLE--TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP---IRCHDAVDVGW 74 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~--tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s---g~~i~t~~~~~ 74 (625)
|.|++||+||.|.++-||.-. .++++.+++||...|.|++|+++|.+|++|+.| ++.||.... ..|..++..|.
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred CCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence 789999999999999999765 467899999999999999999999999999999 999999874 35677777787
Q ss_pred CceeEEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCcccc
Q 006939 75 SRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSA 128 (625)
Q Consensus 75 s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~ 128 (625)
.-|..+.+ |...+|++++.|++|++|.-.. .. .=....++.+|...+-..
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dd--dW~c~~tl~g~~~TVW~~ 201 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DD--DWECVQTLDGHENTVWSL 201 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecC--CC--CeeEEEEecCccceEEEE
Confidence 77888888 5778999999999999997551 11 224577888887655443
No 46
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.10 E-value=5.3e-10 Score=126.42 Aligned_cols=99 Identities=21% Similarity=0.342 Sum_probs=89.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcC-CCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP-DGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsP-dg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
.++|+|+|.|+|||||++...+|+.+|. |...|+||+|+| |.++|++|+-| .||||++...+.....+++ ..|..+
T Consensus 380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAv 457 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAV 457 (712)
T ss_pred CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeE
Confidence 5789999999999999999999998886 889999999999 78999999999 9999999888877766666 557777
Q ss_pred Ee-cCCCEEEEeeCCCeEEEEecc
Q 006939 81 NV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 81 ~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+ |+|+..+.|..+|.+++|++.
T Consensus 458 cy~PdGk~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 458 CYSPDGKGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred EeccCCceEEEEEeccEEEEEEcc
Confidence 77 899999999999999999987
No 47
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.09 E-value=3e-10 Score=121.74 Aligned_cols=102 Identities=23% Similarity=0.384 Sum_probs=92.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCC-CEEEEEeCC-cEEEEeCCCCeeEEEEeccCCcee
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLS 78 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg-~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~ 78 (625)
.+|..|+|+|.|+++++||.+||+++..+.. ...+.|+.|+||+ +.|++|+.| .|+.||.++++.++.+..+.+.+.
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~ 346 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL 346 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee
Confidence 3689999999999999999999999988753 3567999999998 788899888 999999999998888888888889
Q ss_pred EEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
++.| ++++.++++++|+.|+||+.+
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENR 372 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcC
Confidence 9988 899999999999999999988
No 48
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.09 E-value=7.3e-10 Score=117.51 Aligned_cols=103 Identities=19% Similarity=0.283 Sum_probs=94.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC--CeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCce
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETS--GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRL 77 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~--~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v 77 (625)
|+|.+|++++.|++.-+.|+++|.++......++ .+.+..|||||.+|.+|..| .++|||+..+.....|.+|.++|
T Consensus 313 ~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 313 PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV 392 (506)
T ss_pred cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence 6899999999999999999999998877654433 47899999999999999999 89999999988888899999999
Q ss_pred eEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 78 SDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 78 ~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+.| .+|.+|+++.+|++|++||++
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEeh
Confidence 99999 689999999999999999998
No 49
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.09 E-value=4.6e-10 Score=125.38 Aligned_cols=122 Identities=16% Similarity=0.219 Sum_probs=113.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|||++||.|-.|.||++|-+.+.+...++-||.-+|.|+..+||+..+++|+.| +|+||.+.-|.|++.+..|...+..
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~ 597 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS 597 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence 899999999999999999999999999999999999999999999999999999 9999999999999999999998888
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
+.| |...++.+++.|+.|+-||-+ ....+.++.+|...+.+..
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg~-------kFe~iq~L~~H~~ev~cLa 641 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDGE-------KFEEIQKLDGHHSEVWCLA 641 (888)
T ss_pred EEEcccceeEEEecCcceEEeechh-------hhhhheeeccchheeeeeE
Confidence 888 888888999999999999987 5677888999988776654
No 50
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.1e-09 Score=109.76 Aligned_cols=119 Identities=14% Similarity=0.188 Sum_probs=94.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCC-CCEEEEEeCC-cEEEEeCCC-CeeEEEEeccCCcee
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD-GRTLLCGLHE-SLKVFSWEP-IRCHDAVDVGWSRLS 78 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPd-g~~LvSgs~D-sIrVWdl~s-g~~i~t~~~~~s~v~ 78 (625)
+++.++++|-|+||||||....+.+.++.+|..-|+...|+|. +.++++++.| ++++||++. |+.+. +..|...+.
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil 194 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEIL 194 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeE
Confidence 3567888899999999999999999999999999999999995 6788899988 999999974 55443 555555555
Q ss_pred EEEe--cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccc
Q 006939 79 DLNV--HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSS 127 (625)
Q Consensus 79 ~l~~--~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~ 127 (625)
+..+ .+..+|++|+.|+.|+.||++.-+ ..+..+.||.-.++.
T Consensus 195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r------~pl~eL~gh~~AVRk 239 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLR------TPLFELNGHGLAVRK 239 (311)
T ss_pred eecccccCCcEEEecCCCceEEEEehhhcc------ccceeecCCceEEEE
Confidence 5555 588999999999999999998322 335566666555543
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.07 E-value=5.3e-10 Score=117.90 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=96.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCC---CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEecc--C
Q 006939 1 MSGYFHFSGSADRTVKFWDLET---FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG--W 74 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~t---g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~--~ 74 (625)
+||++||||+.|.|+-||++-. .++.+++.+|..+|..|.|+||.+++++|+.+ .+++||..+|.+...+..+ .
T Consensus 234 ~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~ 313 (519)
T KOG0293|consen 234 HNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGF 313 (519)
T ss_pred CCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCC
Confidence 6899999999999999998632 56688999999999999999999999999988 9999999999987766543 4
Q ss_pred CceeEEEecCCCEEEEeeCCCeEEEEeccCCccccccccceeE
Q 006939 75 SRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTR 117 (625)
Q Consensus 75 s~v~~l~~~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~ 117 (625)
+...+.-+|||..+++|+.|+.+..||++..-...+.+.+...
T Consensus 314 S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~ 356 (519)
T KOG0293|consen 314 SVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPK 356 (519)
T ss_pred CcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccce
Confidence 4333334499999999999999999999966666665555433
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.07 E-value=4.1e-09 Score=103.65 Aligned_cols=103 Identities=27% Similarity=0.502 Sum_probs=91.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|++.+|++++.|+.|++||+.+++.+..+..|...+.++.|++++.++++++.+ .|++||+..++....+..+...+..
T Consensus 61 ~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 140 (289)
T cd00200 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS 140 (289)
T ss_pred CCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence 567899999999999999999988888999998899999999999899888856 9999999988888877777777888
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.+ +++.+++++..++.|++||+.
T Consensus 141 ~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 141 VAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred EEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 888 568888888879999999987
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.06 E-value=4.1e-09 Score=103.60 Aligned_cols=103 Identities=29% Similarity=0.472 Sum_probs=91.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|++.+|++|+.|+.+++||+.+++.+..+..|...+..+.|.|++..+++++.+ .|++|++..++....+..+...+..
T Consensus 19 ~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~ 98 (289)
T cd00200 19 PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSS 98 (289)
T ss_pred CCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEE
Confidence 578999999999999999999998888899999999999999999999999888 9999999988777777767667888
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.+ +++.++++++.++.|.+||+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 99 VAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEEcCCCCEEEEecCCCeEEEEECC
Confidence 888 567788888879999999987
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.05 E-value=1.1e-09 Score=114.60 Aligned_cols=123 Identities=20% Similarity=0.203 Sum_probs=99.2
Q ss_pred CCCCEEEEEeCCCeEEEEECC-------------------------CCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-
Q 006939 1 MSGYFHFSGSADRTVKFWDLE-------------------------TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE- 54 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~-------------------------tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D- 54 (625)
++|..|++||.|.+++||+.+ +...+.++.||+..|.+|.|.+ ...++++++|
T Consensus 203 ~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDH 281 (423)
T KOG0313|consen 203 SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDH 281 (423)
T ss_pred CCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccc
Confidence 578999999999999999932 1234667899999999999987 6688899999
Q ss_pred cEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 55 SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 55 sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
+|++||++++.+...+..... +.++.. +...+|+||+.|..+++||.+.. -......++.||..++.+.-
T Consensus 282 TIk~WDletg~~~~~~~~~ks-l~~i~~~~~~~Ll~~gssdr~irl~DPR~~----~gs~v~~s~~gH~nwVssvk 352 (423)
T KOG0313|consen 282 TIKVWDLETGGLKSTLTTNKS-LNCISYSPLSKLLASGSSDRHIRLWDPRTG----DGSVVSQSLIGHKNWVSSVK 352 (423)
T ss_pred eEEEEEeecccceeeeecCcc-eeEeecccccceeeecCCCCceeecCCCCC----CCceeEEeeecchhhhhhee
Confidence 999999999999887765543 455554 67889999999999999998832 13345678899999986543
No 55
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.05 E-value=3.3e-10 Score=119.33 Aligned_cols=123 Identities=24% Similarity=0.286 Sum_probs=100.1
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|.-.++|+||.|..|++||.++|.|+.++.+|...|..+.|+|++++|++++.| .++|||+++.+.+.++..|...+.+
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence 456789999999999999999999999999999999999999999999999999 9999999976666666666666777
Q ss_pred EEe--cCCCEEEEeeCCCeEEEEeccCCc----cccccccceeEEeccCC
Q 006939 80 LNV--HEGKLLGCSYNQSCVGVWVVDISR----IEPYTIGSVTRVNGLSE 123 (625)
Q Consensus 80 l~~--~dg~lL~sg~~Dg~V~vWdv~~~~----~~~~~~~~i~~l~gHs~ 123 (625)
+.+ ....++.+|+.||.|..|++.... +.+.....+..+..|.-
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL 361 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecccc
Confidence 766 377899999999999999988221 22223444555555543
No 56
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.04 E-value=3.6e-09 Score=125.45 Aligned_cols=124 Identities=18% Similarity=0.256 Sum_probs=99.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEc-CCCCEEEEEeCC-cEEEEeCCCCe-eEEEEeccCCcee
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN-PDGRTLLCGLHE-SLKVFSWEPIR-CHDAVDVGWSRLS 78 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fs-Pdg~~LvSgs~D-sIrVWdl~sg~-~i~t~~~~~s~v~ 78 (625)
++.+|+||+.|++|++||+.++.++..+..+ ..|.++.|+ ++|.+|++|+.| .|++||++.+. .+..+..|...+.
T Consensus 587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~ 665 (793)
T PLN00181 587 DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665 (793)
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEE
Confidence 6889999999999999999999999888765 679999995 468999999999 99999998765 4566667778888
Q ss_pred EEEecCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccc
Q 006939 79 DLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSS 127 (625)
Q Consensus 79 ~l~~~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~ 127 (625)
.+.|.++.+|++++.|+.|++||+.... .......+..+.+|...+..
T Consensus 666 ~v~f~~~~~lvs~s~D~~ikiWd~~~~~-~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 666 YVRFVDSSTLVSSSTDNTLKLWDLSMSI-SGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred EEEEeCCCEEEEEECCCEEEEEeCCCCc-cccCCcceEEEcCCCCCeeE
Confidence 9988888899999999999999987221 11123446677777665443
No 57
>PTZ00420 coronin; Provisional
Probab=99.04 E-value=3.3e-09 Score=120.36 Aligned_cols=102 Identities=12% Similarity=0.132 Sum_probs=82.2
Q ss_pred CCCC-EEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCcee
Q 006939 1 MSGY-FHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLS 78 (625)
Q Consensus 1 PdG~-lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~ 78 (625)
|++. +|++|+.|++|+|||+++++.+..+. |...|.++.|+|+|.+|++++.| .|+|||++++.++..+..|.+.+.
T Consensus 135 P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~ 213 (568)
T PTZ00420 135 PMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN 213 (568)
T ss_pred CCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCce
Confidence 4565 46899999999999999999887776 55789999999999999999888 999999999998887776655432
Q ss_pred E--EE---e-cCCCEEEEeeCCC----eEEEEecc
Q 006939 79 D--LN---V-HEGKLLGCSYNQS----CVGVWVVD 103 (625)
Q Consensus 79 ~--l~---~-~dg~lL~sg~~Dg----~V~vWdv~ 103 (625)
. +. + +++.+|++++.++ .|++||++
T Consensus 214 s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 214 TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 2 21 2 5777887766653 79999988
No 58
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.04 E-value=1.4e-09 Score=113.76 Aligned_cols=102 Identities=15% Similarity=0.308 Sum_probs=88.4
Q ss_pred CCEEEEEeCCCeEEEEECCCC---eEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC---CeeEEEEeccCC
Q 006939 3 GYFHFSGSADRTVKFWDLETF---ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP---IRCHDAVDVGWS 75 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg---~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s---g~~i~t~~~~~s 75 (625)
...|||||.|++|+|||++.+ .++.+ +.|.+.|..|.|+....+|++|++| +++|||++. +..+..+.-|..
T Consensus 270 ~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 270 DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred CceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 457899999999999999988 34444 8899999999999988899999999 999999985 456678888999
Q ss_pred ceeEEEe--cCCCEEEEeeCCCeEEEEeccCC
Q 006939 76 RLSDLNV--HEGKLLGCSYNQSCVGVWVVDIS 105 (625)
Q Consensus 76 ~v~~l~~--~dg~lL~sg~~Dg~V~vWdv~~~ 105 (625)
+|.++.+ ++...+++++.|..|.+||+.+.
T Consensus 349 pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 349 PITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred CeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 9999999 47788899999999999999843
No 59
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.2e-10 Score=119.49 Aligned_cols=122 Identities=20% Similarity=0.283 Sum_probs=107.1
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEE--------eCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEe
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGS--------AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVD 71 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~t--------l~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~ 71 (625)
|||++|++||.||-|-+|++.+|++... +.-+...|.|+.|+.|...+++|+.| .|+||-+++|.|++.+.
T Consensus 223 PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd 302 (508)
T KOG0275|consen 223 PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD 302 (508)
T ss_pred CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence 8999999999999999999999987543 23467899999999999999999999 99999999999998887
Q ss_pred -ccCCceeEEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 72 -VGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 72 -~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
.|...+.++.| .++..+++++.|.++++.-+. .+..+..+.||+..+....
T Consensus 303 rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-------SGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 303 RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-------SGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred hhhccCeeEEEEccCcchhhcccccceEEEeccc-------cchhHHHhcCccccccceE
Confidence 67788899998 688889999999999998777 6788888999988876543
No 60
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.02 E-value=2.7e-09 Score=119.44 Aligned_cols=102 Identities=17% Similarity=0.328 Sum_probs=95.5
Q ss_pred CCCEEEEEeCC-CeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 2 SGYFHFSGSAD-RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 2 dG~lLASGS~D-~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
.|.+||-|+.. |.+-+|+..+...+...++|...+.+++++|||.++++|+.| .|||||...|.|+-++.-|.+.+..
T Consensus 318 tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~ 397 (893)
T KOG0291|consen 318 TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTA 397 (893)
T ss_pred cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEE
Confidence 47888888754 789999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.| ..++.|++++-||+|+.||+.
T Consensus 398 v~f~~~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 398 VQFTARGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred EEEEecCCEEEEeecCCeEEeeeec
Confidence 999 589999999999999999987
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.02 E-value=2.9e-09 Score=120.25 Aligned_cols=121 Identities=24% Similarity=0.324 Sum_probs=108.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEE-eCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~t-l~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
+.++++|+.|.++++||..++..+.. +.||.++|.++.|..-+..+++|+.| +++|||..+|.|..++.+|++.+..+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL 297 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence 45788999999999999999999988 99999999999998778899999999 99999999999999999999988888
Q ss_pred EecCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccccC
Q 006939 81 NVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGN 131 (625)
Q Consensus 81 ~~~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~~~ 131 (625)
.. .+.++++|+.|.+|++|++. .+..+..+.||...+.....+
T Consensus 298 ~~-~~~~~~sgs~D~tVkVW~v~-------n~~~l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 298 TI-DPFLLVSGSRDNTVKVWDVT-------NGACLNLLRGHTGPVNCVQLD 340 (537)
T ss_pred Ec-cCceEeeccCCceEEEEecc-------CcceEEEeccccccEEEEEec
Confidence 75 45667788999999999998 677788888899999887655
No 62
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.02 E-value=1.2e-09 Score=112.20 Aligned_cols=102 Identities=21% Similarity=0.348 Sum_probs=95.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCC--EEEEEeCC-cEEEEeCCCCeeEEEEeccCCcee
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR--TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLS 78 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~--~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~ 78 (625)
+|.++||||.|.+|+|||+.+...++.+-.|.+.|+++.|.++-. +|++|++| .|.+|+..+..+..++..|..+|.
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT 131 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence 588999999999999999999999999999999999999998765 89999999 999999999999999999999999
Q ss_pred EEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
++.+ |.+++.++.+.|+.+++|++-
T Consensus 132 ~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 132 DLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred eeEecCCCceEEEEcCCceeeeehhh
Confidence 9999 699999999999999999976
No 63
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.01 E-value=2.7e-09 Score=114.22 Aligned_cols=122 Identities=17% Similarity=0.254 Sum_probs=108.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
+|.+||+|+.||.++||+.. |.++.++..|.++|.++.|+-+|.+|++++.| ++.+||..+|.+.+.+..+..+..++
T Consensus 246 ~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDV 324 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDV 324 (524)
T ss_pred CCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccce
Confidence 69999999999999999975 88999999999999999999999999999999 99999999999998888887776778
Q ss_pred EecCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccccC
Q 006939 81 NVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGN 131 (625)
Q Consensus 81 ~~~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~~~ 131 (625)
.+-+..-+++++.|+.|+|+-++ ....+.++.||...+...--+
T Consensus 325 dW~~~~~F~ts~td~~i~V~kv~-------~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 325 DWQSNDEFATSSTDGCIHVCKVG-------EDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred EEecCceEeecCCCceEEEEEec-------CCCcceeeecccCceEEEEEC
Confidence 87677788999999999999988 456778889998888765433
No 64
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=6.4e-10 Score=124.66 Aligned_cols=101 Identities=23% Similarity=0.360 Sum_probs=90.7
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCC-CCEEEEEeCC-cEEEEeCC-CCeeEEEEeccCCceeEE
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD-GRTLLCGLHE-SLKVFSWE-PIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPd-g~~LvSgs~D-sIrVWdl~-sg~~i~t~~~~~s~v~~l 80 (625)
.+|+|||.|++||+||++..+...++.+....|+.|.|+|. +..|+++.+. .+.+||++ +.+|...+..|.+++.++
T Consensus 147 ~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 147 NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL 226 (839)
T ss_pred cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence 68999999999999999999999999988899999999995 6677777766 89999997 577888888899999999
Q ss_pred Ee-cCCCEEEEeeCCCeEEEEeccC
Q 006939 81 NV-HEGKLLGCSYNQSCVGVWVVDI 104 (625)
Q Consensus 81 ~~-~dg~lL~sg~~Dg~V~vWdv~~ 104 (625)
.+ |++.+|++|+.|+.|+|||+..
T Consensus 227 nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 227 NWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred eecCCCceeeecCCCccEEEEeccC
Confidence 98 7999999999999999999983
No 65
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=5.1e-09 Score=111.55 Aligned_cols=127 Identities=20% Similarity=0.196 Sum_probs=99.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCC-CCEEEEEeCC-cEEEEeCCC-CeeEEEEeccCCceeE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD-GRTLLCGLHE-SLKVFSWEP-IRCHDAVDVGWSRLSD 79 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPd-g~~LvSgs~D-sIrVWdl~s-g~~i~t~~~~~s~v~~ 79 (625)
..+|||||.|.||++||+.+|++..++..|...|.++.|+|. ..+|++|+.| ++.++|.+. ......+.+. +.+-.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-g~VEk 334 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-GEVEK 334 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-cceEE
Confidence 357999999999999999999999999999999999999995 5688899999 999999984 2222222211 22444
Q ss_pred EEe--cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccccCcCccc
Q 006939 80 LNV--HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGNLSVLN 136 (625)
Q Consensus 80 l~~--~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~~~~~~~~ 136 (625)
+.+ +....++++.+||.|+-+|++. .+..+.++..|.+.+.+...+....+
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~------~~~~vwt~~AHd~~ISgl~~n~~~p~ 387 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRN------PGKPVWTLKAHDDEISGLSVNIQTPG 387 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCC------CCCceeEEEeccCCcceEEecCCCCc
Confidence 444 4666788999999999999982 24788999999999988775555544
No 66
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.00 E-value=2e-09 Score=110.28 Aligned_cols=103 Identities=21% Similarity=0.403 Sum_probs=91.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEe---CCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEe--ccC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSA---GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVD--VGW 74 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl---~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~--~~~ 74 (625)
|.|.+|+.|....++++||++|.+|.... .+|++.|.++.+++.|++.++|+.| .|++||--+++|+.++. .+.
T Consensus 226 PsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g 305 (430)
T KOG0640|consen 226 PSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG 305 (430)
T ss_pred CCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC
Confidence 78999999999999999999999997764 6799999999999999999999999 99999999999998774 233
Q ss_pred CceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 75 SRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 75 s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..|....| .+++++++++.|+.|++|.+.
T Consensus 306 sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 306 SEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 44555555 799999999999999999987
No 67
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.99 E-value=2.5e-09 Score=118.14 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=102.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCe--EEEE--------eC-CCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFE--LIGS--------AG-PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD 68 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~--~i~t--------l~-~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~ 68 (625)
++..++||||.|+.|.+||++++. ++++ +. |+..+|++++.++.|..+++|+.. .|++||.++++.+-
T Consensus 128 k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim 207 (735)
T KOG0308|consen 128 KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM 207 (735)
T ss_pred cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccccee
Confidence 467899999999999999999872 3222 23 788999999999999999999988 89999999988877
Q ss_pred EEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 69 AVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 69 t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
.+.+|...|.++.+ .+|..+++++.||+|++||+. ....+.++..|.+.+-+..
T Consensus 208 kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg-------qQrCl~T~~vH~e~VWaL~ 262 (735)
T KOG0308|consen 208 KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG-------QQRCLATYIVHKEGVWALQ 262 (735)
T ss_pred eeeccccceEEEEEcCCCCeEeecCCCceEEeeecc-------ccceeeeEEeccCceEEEe
Confidence 77899999999988 799999999999999999998 3456667777877765543
No 68
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.99 E-value=2.7e-09 Score=105.97 Aligned_cols=102 Identities=15% Similarity=0.216 Sum_probs=89.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC--CeeEEEEeccCCcee
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP--IRCHDAVDVGWSRLS 78 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s--g~~i~t~~~~~s~v~ 78 (625)
|...|++|+.|+.+.+||+++|+.++.+.+|.+.|..++|+.+...+++|+.| ++++||-++ .+.++++.-....+.
T Consensus 70 Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~ 149 (307)
T KOG0316|consen 70 DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS 149 (307)
T ss_pred cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCcee
Confidence 55678999999999999999999999999999999999999999999999999 999999875 456777766666677
Q ss_pred EEEecCCCEEEEeeCCCeEEEEeccC
Q 006939 79 DLNVHEGKLLGCSYNQSCVGVWVVDI 104 (625)
Q Consensus 79 ~l~~~dg~lL~sg~~Dg~V~vWdv~~ 104 (625)
.+.+ .+..++.|+.||.++.||++.
T Consensus 150 Si~v-~~heIvaGS~DGtvRtydiR~ 174 (307)
T KOG0316|consen 150 SIDV-AEHEIVAGSVDGTVRTYDIRK 174 (307)
T ss_pred EEEe-cccEEEeeccCCcEEEEEeec
Confidence 7776 345688999999999999993
No 69
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.97 E-value=2.8e-09 Score=108.99 Aligned_cols=101 Identities=15% Similarity=0.215 Sum_probs=84.2
Q ss_pred CCCEEEEEeCCCeEEEEECCC-CeEEEE-eCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCcee
Q 006939 2 SGYFHFSGSADRTVKFWDLET-FELIGS-AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLS 78 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~t-g~~i~t-l~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~ 78 (625)
.+.+++.||-|++||+|+++. |..+.. ...|.++|.+++|+-||..+++|+.| .+++||+.+++. ..+..|-.++.
T Consensus 39 ~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvk 117 (347)
T KOG0647|consen 39 ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVK 117 (347)
T ss_pred cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeeeeccccee
Confidence 466788999999999999986 455443 46688999999999999999999999 999999999954 44566777788
Q ss_pred EEEe-c--CCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNV-H--EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~-~--dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+++ . .-..|++|+.|.+|++||++
T Consensus 118 t~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 118 TCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred EEEEecCCCcceeEecccccceeecccC
Confidence 8877 3 34478999999999999998
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.97 E-value=2.8e-09 Score=113.13 Aligned_cols=101 Identities=20% Similarity=0.357 Sum_probs=87.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEecc-CCcee
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG-WSRLS 78 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~-~s~v~ 78 (625)
|||.+|++|..|+.|+|||+..+.....|.+|+++|..|.|+.+|.|++++++| .|++||++..+.+.++... ...+.
T Consensus 357 pDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 357 PDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN 436 (506)
T ss_pred CCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence 899999999999999999999999999999999999999999999999999999 7999999988877776543 23577
Q ss_pred EEEe-cCCCEEEEeeCCCeEEEEe
Q 006939 79 DLNV-HEGKLLGCSYNQSCVGVWV 101 (625)
Q Consensus 79 ~l~~-~dg~lL~sg~~Dg~V~vWd 101 (625)
.+.| ..|++|+.++.+=.|++++
T Consensus 437 s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred eEEEcCCCCeEEeecceeEEEEEe
Confidence 8888 6899999997765555543
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.96 E-value=5e-09 Score=112.68 Aligned_cols=100 Identities=21% Similarity=0.376 Sum_probs=83.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCC-CCEEEEEeCC-cEEEEeCCCC-eeEEEEeccCCcee
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD-GRTLLCGLHE-SLKVFSWEPI-RCHDAVDVGWSRLS 78 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPd-g~~LvSgs~D-sIrVWdl~sg-~~i~t~~~~~s~v~ 78 (625)
++..|++|+.|+.+++||+.+...+..+.+|++.|+|.+|+|- +..++||+.| .|++||.+.. ..+..+. |..+|.
T Consensus 122 d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe 200 (487)
T KOG0310|consen 122 DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVE 200 (487)
T ss_pred CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCcee
Confidence 5788999999999999999999887789999999999999996 4578899999 9999999876 3333343 456677
Q ss_pred EEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+.+ +.|.++++++. +.|+|||+-
T Consensus 201 ~vl~lpsgs~iasAgG-n~vkVWDl~ 225 (487)
T KOG0310|consen 201 SVLALPSGSLIASAGG-NSVKVWDLT 225 (487)
T ss_pred eEEEcCCCCEEEEcCC-CeEEEEEec
Confidence 7766 88888888776 589999986
No 72
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.96 E-value=1.8e-09 Score=122.25 Aligned_cols=101 Identities=11% Similarity=0.213 Sum_probs=86.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCC----------------------------------------------------------
Q 006939 1 MSGYFHFSGSADRTVKFWDLET---------------------------------------------------------- 22 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~t---------------------------------------------------------- 22 (625)
+||++||+||.|+.|+||.+..
T Consensus 277 ~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~ 356 (712)
T KOG0283|consen 277 HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFV 356 (712)
T ss_pred CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcccc
Confidence 6999999999999999997543
Q ss_pred --CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-c-CCCEEEEeeCCCeE
Q 006939 23 --FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-H-EGKLLGCSYNQSCV 97 (625)
Q Consensus 23 --g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~-dg~lL~sg~~Dg~V 97 (625)
.+.++.+.||++.|..+.|+.+ .+|++++.| ++|+|.+....|+.+|. |-..|.+++| | |++++++|+-|+.|
T Consensus 357 f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~Kv 434 (712)
T KOG0283|consen 357 FSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKV 434 (712)
T ss_pred ccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccce
Confidence 0113346799999999999954 588899999 99999999999998875 6688999999 3 99999999999999
Q ss_pred EEEecc
Q 006939 98 GVWVVD 103 (625)
Q Consensus 98 ~vWdv~ 103 (625)
+||++.
T Consensus 435 RiWsI~ 440 (712)
T KOG0283|consen 435 RLWSIS 440 (712)
T ss_pred EEeecC
Confidence 999987
No 73
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.95 E-value=5.5e-09 Score=111.48 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=99.9
Q ss_pred CCCEEEEEeCCCeEEEEECC--CCeEEEEeCCCCCCeEEEEEcCC-CCEEEEEeCC-cEEEEeCCC-CeeEEEEeccCCc
Q 006939 2 SGYFHFSGSADRTVKFWDLE--TFELIGSAGPETSGVRCLTFNPD-GRTLLCGLHE-SLKVFSWEP-IRCHDAVDVGWSR 76 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~--tg~~i~tl~~h~~~V~sv~fsPd-g~~LvSgs~D-sIrVWdl~s-g~~i~t~~~~~s~ 76 (625)
+..+|++++.|+.+.|||++ +.++.+...+|.+.|.|++|+|- +..|++|+.| +|++||++. ..++.++..|-..
T Consensus 239 h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de 318 (422)
T KOG0264|consen 239 HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE 318 (422)
T ss_pred chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc
Confidence 45789999999999999999 56667788999999999999995 5667789988 999999986 3456677777777
Q ss_pred eeEEEe--cCCCEEEEeeCCCeEEEEecc-CCcccc------ccccceeEEeccCCCccccccCc
Q 006939 77 LSDLNV--HEGKLLGCSYNQSCVGVWVVD-ISRIEP------YTIGSVTRVNGLSESKSSASGNL 132 (625)
Q Consensus 77 v~~l~~--~dg~lL~sg~~Dg~V~vWdv~-~~~~~~------~~~~~i~~l~gHs~~v~~~~~~~ 132 (625)
|..+.| +....|++++.|+.+.|||+. +...+. -....+..=.||...+....-++
T Consensus 319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp 383 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP 383 (422)
T ss_pred eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC
Confidence 888877 578899999999999999988 111111 01122444567777766555444
No 74
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.94 E-value=2e-09 Score=120.34 Aligned_cols=103 Identities=20% Similarity=0.260 Sum_probs=98.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
||+.+++|||.|++|++|-+.=|.|-..+..|...|.++.|-|+...+++++.| .++=||-+...+++.+..|...+.+
T Consensus 560 ~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 560 PDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWC 639 (888)
T ss_pred CCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeee
Confidence 789999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
++. ++|.+++++++|..|++|...
T Consensus 640 Lav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 640 LAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred eEEcCCCCeEEeccCCceeEeeecc
Confidence 887 899999999999999999654
No 75
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.93 E-value=5.4e-09 Score=109.58 Aligned_cols=121 Identities=18% Similarity=0.267 Sum_probs=99.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCe---eEEEEeccCCce
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR---CHDAVDVGWSRL 77 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~---~i~t~~~~~s~v 77 (625)
+...+.++|.|.||+.||++++.++..+.+. ..+.|+.++|...+|++|+.| .|++||.+++. ...++.+|.+.|
T Consensus 270 d~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV 348 (423)
T KOG0313|consen 270 DATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV 348 (423)
T ss_pred CCCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh
Confidence 4567889999999999999999999888764 668999999999999999999 99999998643 345667777777
Q ss_pred eEEEe-c-CCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 78 SDLNV-H-EGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 78 ~~l~~-~-dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
..+.+ + +..+|++++.|+++++||++.. ...++.+.+|.+.+.+..
T Consensus 349 ssvkwsp~~~~~~~S~S~D~t~klWDvRS~------k~plydI~~h~DKvl~vd 396 (423)
T KOG0313|consen 349 SSVKWSPTNEFQLVSGSYDNTVKLWDVRST------KAPLYDIAGHNDKVLSVD 396 (423)
T ss_pred hheecCCCCceEEEEEecCCeEEEEEeccC------CCcceeeccCCceEEEEe
Confidence 77777 3 6778899999999999999922 236788888877776543
No 76
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.91 E-value=5.1e-09 Score=110.18 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=96.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-------EEEEeCCCCCCeEEEEEcCCC-CEEEEEeCC-cEEEEeCCCCeeEEEEec
Q 006939 2 SGYFHFSGSADRTVKFWDLETFE-------LIGSAGPETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEPIRCHDAVDV 72 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~-------~i~tl~~h~~~V~sv~fsPdg-~~LvSgs~D-sIrVWdl~sg~~i~t~~~ 72 (625)
|.+.|||||.|.+|.||.+..+. .+..+.+|+..|.-|.|||.. +.|++++.| +|.+|++.+|+.+-++.
T Consensus 93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~- 171 (472)
T KOG0303|consen 93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD- 171 (472)
T ss_pred CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-
Confidence 56789999999999999986544 356789999999999999974 567788888 99999999999887777
Q ss_pred cCCceeEEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCc
Q 006939 73 GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESK 125 (625)
Q Consensus 73 ~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v 125 (625)
|-..|..+.| .+|.+|++.+.|..|+|||.+ .+..+..-.+|....
T Consensus 172 hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr-------~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 172 HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR-------RGTVVSEGVAHEGAK 218 (472)
T ss_pred CCCeEEEEEeccCCceeeeecccceeEEEcCC-------CCcEeeecccccCCC
Confidence 7888999998 799999999999999999988 344444445565543
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.91 E-value=7.5e-09 Score=119.97 Aligned_cols=103 Identities=18% Similarity=0.301 Sum_probs=95.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCC------------------CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeC
Q 006939 1 MSGYFHFSGSADRTVKFWDLET------------------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 61 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~t------------------g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl 61 (625)
|||++||+||.|+.|-||.... .+++..+.+|.+.|..++|+|++.+|++++.| +|.+|+.
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc
Confidence 7999999999999999999772 23677889999999999999999999999999 9999999
Q ss_pred CCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 62 EPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 62 ~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+++++.++.+|.+.|..+.| |-|+++++=++|++|+||.+.
T Consensus 159 ~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 159 KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence 999999999999999999999 899999999999999999955
No 78
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=4.1e-09 Score=108.13 Aligned_cols=102 Identities=16% Similarity=0.282 Sum_probs=93.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCC-eeEEEEeccCCceeE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI-RCHDAVDVGWSRLSD 79 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg-~~i~t~~~~~s~v~~ 79 (625)
.|+.+++||.|++..+||+++|+.+..+.||.....-++-+|..+++++.+.| +.++||++.. ..+..|.+|...+..
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 47889999999999999999999999999999999989999999999999999 9999999843 345777889999999
Q ss_pred EEecCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..|..+..+++|++|.+|+|||++
T Consensus 363 ~vF~~dd~vVSgSDDrTvKvWdLr 386 (481)
T KOG0300|consen 363 VVFNTDDRVVSGSDDRTVKVWDLR 386 (481)
T ss_pred EEEecCCceeecCCCceEEEeeec
Confidence 999878889999999999999998
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.89 E-value=6e-09 Score=112.03 Aligned_cols=105 Identities=12% Similarity=0.199 Sum_probs=90.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCC-EEEEEeCC-cEEEEeCCCCeeEEEEeccCCcee
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLS 78 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~-~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~ 78 (625)
.||++||.|...|.|++||+.+...++.+..|+.+|+.+.|+|++. .|++|++| .+++||+.++..+..+..|...|.
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence 3899999999999999999776667788999999999999999654 56678888 899999999887657788888888
Q ss_pred EEEe-c-CCCEEEEeeCCCeEEEEeccCC
Q 006939 79 DLNV-H-EGKLLGCSYNQSCVGVWVVDIS 105 (625)
Q Consensus 79 ~l~~-~-dg~lL~sg~~Dg~V~vWdv~~~ 105 (625)
+..+ + ++-++++|+.||.|++||++..
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccC
Confidence 8887 3 5668899999999999999943
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=1.4e-08 Score=100.17 Aligned_cols=102 Identities=20% Similarity=0.294 Sum_probs=92.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCC--C-----CCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEecc
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGP--E-----TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~--h-----~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~ 73 (625)
+|-.|++|+.|.+|++|||+...++.++.. | .+.|.+++..|.|++|++|..| +..+||++.++.++.+.-|
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph 272 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH 272 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC
Confidence 466899999999999999999999888632 2 3568999999999999999999 8999999999999999999
Q ss_pred CCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
...+.++.| +...+|++++.|..|++-|+.
T Consensus 273 sadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 273 SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred ccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 999999999 777889999999999999987
No 81
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.88 E-value=2.7e-08 Score=100.50 Aligned_cols=101 Identities=22% Similarity=0.292 Sum_probs=80.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
+|.+|+|++.|.++.+|--..|+-++++.||++.|+|+...-+...+++|+.| ++++||+++|+++..+..+ ..+..+
T Consensus 21 eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~ 99 (327)
T KOG0643|consen 21 EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRV 99 (327)
T ss_pred CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEE
Confidence 78999999999999999888899999999999999999999999999999999 9999999999998777544 234444
Q ss_pred Ee-cCCCEEEEe-----eCCCeEEEEecc
Q 006939 81 NV-HEGKLLGCS-----YNQSCVGVWVVD 103 (625)
Q Consensus 81 ~~-~dg~lL~sg-----~~Dg~V~vWdv~ 103 (625)
.| .+|.+++.+ +..+.|.++|++
T Consensus 100 ~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 100 DFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred eeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 44 344443332 233466666665
No 82
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.88 E-value=6.8e-09 Score=106.58 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=89.3
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEe----------------------
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS---------------------- 60 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWd---------------------- 60 (625)
.++.++|.|.+.+||.+++|.|+.+|.||.+.|.+|.|++.+.++++++.| +-+||.
T Consensus 161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 478899999999999999999999999999999999999999888888666 666665
Q ss_pred ------------------------------------------------------------CCCCeeEEEEeccCCceeEE
Q 006939 61 ------------------------------------------------------------WEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 61 ------------------------------------------------------------l~sg~~i~t~~~~~s~v~~l 80 (625)
+++|+.+..+.+|-..+...
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc 320 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHC 320 (481)
T ss_pred hcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcccc
Confidence 22222222222332223223
Q ss_pred Ee-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 81 NV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 81 ~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
.. +..+++++++.|.+.++||++. ....+.-+.||++.+....
T Consensus 321 stHptQrLVvTsSrDtTFRLWDFRe------aI~sV~VFQGHtdtVTS~v 364 (481)
T KOG0300|consen 321 STHPTQRLVVTSSRDTTFRLWDFRE------AIQSVAVFQGHTDTVTSVV 364 (481)
T ss_pred ccCCcceEEEEeccCceeEeccchh------hcceeeeecccccceeEEE
Confidence 33 3577889999999999999981 2345667788988876554
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.85 E-value=6.4e-09 Score=106.59 Aligned_cols=103 Identities=22% Similarity=0.386 Sum_probs=83.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEE--eCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEE---eccC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV---DVGW 74 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~t--l~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~---~~~~ 74 (625)
|-+.+|++|+.|++|++||+.+-...+- +......|+++.|+|.|.+++.|.+. ++++||+++.+|.-.. ..+.
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 5678999999999999999875333222 22345789999999999999999888 9999999999997543 3455
Q ss_pred CceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 75 SRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 75 s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..|.++.. ..+++.++++.||.|++||=-
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV 291 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGV 291 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccc
Confidence 66777777 789999999999999999843
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.85 E-value=1.4e-08 Score=117.78 Aligned_cols=127 Identities=17% Similarity=0.246 Sum_probs=106.9
Q ss_pred CCCCEEEEEe--CCCeEEEEECCC------------CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC--
Q 006939 1 MSGYFHFSGS--ADRTVKFWDLET------------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP-- 63 (625)
Q Consensus 1 PdG~lLASGS--~D~tVkIWDL~t------------g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s-- 63 (625)
|||..||||+ .|+.+.||.... .+.+.++..|.+.|.|+.|+|||.+|++|++| .|.||....
T Consensus 23 pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~ 102 (942)
T KOG0973|consen 23 PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIG 102 (942)
T ss_pred CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccC
Confidence 7999999999 999999998642 23456778899999999999999999999999 899999872
Q ss_pred ----------------CeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCcc
Q 006939 64 ----------------IRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKS 126 (625)
Q Consensus 64 ----------------g~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~ 126 (625)
.++..++..|-+-|.++.+ +++.+|++++.|++|.+|+.. ..+.+..+.||...+.
T Consensus 103 ~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~-------tF~~~~vl~~H~s~VK 175 (942)
T KOG0973|consen 103 SGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK-------TFELLKVLRGHQSLVK 175 (942)
T ss_pred CcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc-------cceeeeeeeccccccc
Confidence 1245566678888889988 899999999999999999987 5588899999999988
Q ss_pred ccccCcCc
Q 006939 127 SASGNLSV 134 (625)
Q Consensus 127 ~~~~~~~~ 134 (625)
+..-++..
T Consensus 176 Gvs~DP~G 183 (942)
T KOG0973|consen 176 GVSWDPIG 183 (942)
T ss_pred ceEECCcc
Confidence 87655543
No 85
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.84 E-value=5.7e-08 Score=101.57 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=98.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|+..++|||+.|....+|++.+|+.+..+.+|...|.++.|+.||.+|++|..+ .|+||...++.....+...-..+.=
T Consensus 74 P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieW 153 (399)
T KOG0296|consen 74 PNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEW 153 (399)
T ss_pred CCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEE
Confidence 678999999999999999999999999999999999999999999999999998 9999999998877666422222223
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSS 127 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~ 127 (625)
+.+ +.+.+|+.|+.||.|-+|.+. .......+.||+.....
T Consensus 154 l~WHp~a~illAG~~DGsvWmw~ip-------~~~~~kv~~Gh~~~ct~ 195 (399)
T KOG0296|consen 154 LKWHPRAHILLAGSTDGSVWMWQIP-------SQALCKVMSGHNSPCTC 195 (399)
T ss_pred EEecccccEEEeecCCCcEEEEECC-------CcceeeEecCCCCCccc
Confidence 344 578899999999999999887 22445566777666544
No 86
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.83 E-value=1.5e-08 Score=110.01 Aligned_cols=103 Identities=21% Similarity=0.345 Sum_probs=89.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|||++||+.|.|+.+||||..+.+++..++-..++..|++|+|||++|++|+.| -|.||.+...+.+..-.+|.+.|..
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV 379 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence 699999999999999999999999998888889999999999999999999998 8999999988877666666666666
Q ss_pred EEec-------------------------------------------------CCCEEEEeeCCCeEEEEecc
Q 006939 80 LNVH-------------------------------------------------EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~~-------------------------------------------------dg~lL~sg~~Dg~V~vWdv~ 103 (625)
++|. ....+++.+.|..+.+||+.
T Consensus 380 VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt 452 (636)
T KOG2394|consen 380 VAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT 452 (636)
T ss_pred EeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence 6653 12346888999999999998
No 87
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=2.1e-08 Score=100.62 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=89.2
Q ss_pred CCEEEEEeCCCeEEEEECCC-CeEEEEeCCCCCCeEEEEEcCC-CCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 3 GYFHFSGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPD-GRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~t-g~~i~tl~~h~~~V~sv~fsPd-g~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
+..+++++-||+++|||+.. ...|+.++.|...|.++.|++. +..++++++| +||+|+..-...+.++.++...|..
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~ 152 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQ 152 (311)
T ss_pred cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEE
Confidence 56788999999999999753 3468899999999999999985 5567788999 9999999988899999999888888
Q ss_pred EEe--cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV--HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~--~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+ +.+.++++++.|+.+++||++
T Consensus 153 a~~sp~~~nlfas~Sgd~~l~lwdvr 178 (311)
T KOG0277|consen 153 AAFSPHIPNLFASASGDGTLRLWDVR 178 (311)
T ss_pred EecCCCCCCeEEEccCCceEEEEEec
Confidence 888 588899999999999999998
No 88
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.83 E-value=4.4e-08 Score=102.40 Aligned_cols=102 Identities=17% Similarity=0.204 Sum_probs=93.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
||.+||||..+|.|+||...++.....+......+.=+.|||.+.+|+.|+.| .+.+|.+..+...+++.++...+..=
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 79999999999999999999999988887777888889999999999999999 99999999877778888888888776
Q ss_pred Ee-cCCCEEEEeeCCCeEEEEecc
Q 006939 81 NV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 81 ~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.| ++|+.+++++.||+|++|+..
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~k 220 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPK 220 (399)
T ss_pred cccCCCceEEEEecCceEEEEecC
Confidence 66 899999999999999999987
No 89
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.82 E-value=4.7e-08 Score=106.08 Aligned_cols=100 Identities=16% Similarity=0.286 Sum_probs=93.1
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEe---ccCCceeE
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVD---VGWSRLSD 79 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~---~~~s~v~~ 79 (625)
..++|||.|++|.+|+-.-++.-.++..|...|+|+.|+|||..|++.+.| ++.+||-.+|+.+..+. .|.+.+..
T Consensus 161 fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa 240 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA 240 (603)
T ss_pred eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE
Confidence 468999999999999988899999999999999999999999999999988 99999999998887775 78888999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.+ ||++.+++++.|.+++|||+.
T Consensus 241 lsWsPDs~~~~T~SaDkt~KIWdVs 265 (603)
T KOG0318|consen 241 LSWSPDSTQFLTVSADKTIKIWDVS 265 (603)
T ss_pred EEECCCCceEEEecCCceEEEEEee
Confidence 998 899999999999999999998
No 90
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.82 E-value=7.2e-09 Score=111.59 Aligned_cols=67 Identities=22% Similarity=0.404 Sum_probs=63.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH 67 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i 67 (625)
||.++.++++.||.|.||||....+++.++||++++.||.+++||..|.+|+.| ++|.||++.++..
T Consensus 519 pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 519 PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence 788999999999999999999999999999999999999999999999999999 9999999876643
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.81 E-value=2.4e-08 Score=106.65 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=84.9
Q ss_pred CCCEEEEEeCCCeEEEEECCC-CeEEEEeCCCCCCeEEEEEcCCC-CEEEEEeCC-cEEEEeCCC--------------C
Q 006939 2 SGYFHFSGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEP--------------I 64 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~t-g~~i~tl~~h~~~V~sv~fsPdg-~~LvSgs~D-sIrVWdl~s--------------g 64 (625)
++.+|||||.|++|.+||++. .++++++.+|...|.+|.|+|.. .+|++++.| .+.|||+.. -
T Consensus 284 ~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgpp 363 (422)
T KOG0264|consen 284 NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP 363 (422)
T ss_pred CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCc
Confidence 578999999999999999986 44689999999999999999975 567777778 999999853 1
Q ss_pred eeEEEEeccCCceeEEEe--cCCCEEEEeeCCCeEEEEecc
Q 006939 65 RCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 65 ~~i~t~~~~~s~v~~l~~--~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.+.+..+|...|.++.+ .+...+++...|+.+.||.+.
T Consensus 364 EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 364 ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 223555677888889888 467778889999999999876
No 92
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.80 E-value=1.9e-08 Score=111.89 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=86.9
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEE-
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN- 81 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~- 81 (625)
..++|||.|++||+|.- ++++.++.+|++-|+.+++-+++. |+||+.| .|++|++ +|.|+..+.+|.+.++.+.
T Consensus 152 ~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~ 227 (745)
T KOG0301|consen 152 NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM 227 (745)
T ss_pred CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEe
Confidence 37899999999999975 788999999999999999998765 5688888 9999999 7899999999999999998
Q ss_pred ecCCCEEEEeeCCCeEEEEecc
Q 006939 82 VHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 82 ~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
++++.++++++.|+++++|+.+
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC
Confidence 5899999999999999999877
No 93
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=3e-08 Score=102.02 Aligned_cols=68 Identities=22% Similarity=0.338 Sum_probs=63.1
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD 68 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~ 68 (625)
+.|.+||.|+.||.|-|||+.|+..-+.+.+|..+|.+++|++||+.|++++.| .|++||+..|.+..
T Consensus 33 ~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 33 RWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence 468999999999999999999999888899999999999999999999999999 99999998776643
No 94
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.77 E-value=3.1e-08 Score=104.86 Aligned_cols=62 Identities=16% Similarity=0.306 Sum_probs=56.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeC-CCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAG-PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 62 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~-~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~ 62 (625)
||.++|++++.|..+++||..+|.+.+.+. +|...+.+++|.|||..+++|+.| +|..||+.
T Consensus 279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 899999999999999999999999988874 346789999999999999999999 99999874
No 95
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.77 E-value=1.7e-08 Score=109.18 Aligned_cols=101 Identities=16% Similarity=0.290 Sum_probs=79.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCeE-EEEe-----CCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC-----CeeEEEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFEL-IGSA-----GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP-----IRCHDAV 70 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~-i~tl-----~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s-----g~~i~t~ 70 (625)
-+.|+|++.|++++|||+...+. ...+ .+..-.+..++|++||.+|++|+.| +|.+|+... ..++...
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A 360 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA 360 (641)
T ss_pred ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec
Confidence 45688999999999999976543 2222 2233467899999999999999998 999999743 2233333
Q ss_pred eccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 71 DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 71 ~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.....+.++.| ++|++|++-+.|+++++||++
T Consensus 361 H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 361 HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred cCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 444457889998 799999999999999999998
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.76 E-value=6.1e-08 Score=97.13 Aligned_cols=100 Identities=19% Similarity=0.317 Sum_probs=73.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCE-----------------------------------
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT----------------------------------- 47 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~----------------------------------- 47 (625)
.+.|++.+.|++||+||.+++..+.++.- ...|.++.+++||++
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~ 233 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLH 233 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcccccccccc
Confidence 45667779999999999999988777643 244555555555554
Q ss_pred -----EEEEeCC-cEEEEeCCCCeeEEEE-eccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 48 -----LLCGLHE-SLKVFSWEPIRCHDAV-DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 48 -----LvSgs~D-sIrVWdl~sg~~i~t~-~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+++|+.| .++.||+.+|.-+..+ ..|.++|.++.| |+|.+.++|+.||+|++|.+.
T Consensus 234 P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 234 PKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 4444444 4555555555555553 678899999999 899999999999999999887
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.76 E-value=4.4e-08 Score=108.46 Aligned_cols=103 Identities=19% Similarity=0.245 Sum_probs=94.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
++|..|++|+..+.+++||.++++.+..+.||+..|+++..+.||..+++|+.| +|++||+...+|+.++.+|-..+..
T Consensus 181 ~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 181 QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA 260 (735)
T ss_pred CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence 467899999999999999999999999999999999999999999999999999 9999999999999999888887888
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.. ++=.++.+|+.|+.|..=|+.
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccC
Confidence 877 567789999999999887776
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.75 E-value=6.4e-08 Score=97.55 Aligned_cols=75 Identities=19% Similarity=0.425 Sum_probs=64.7
Q ss_pred eCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 29 AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 29 l~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
++.|.....||.|.|+|++|++|+.| .+-+||++---|.+.+.-.--+|..+.| ++|++|++++.|..|.|=++.
T Consensus 185 i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 185 IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecc
Confidence 34688889999999999999999999 8999999988888888654445888888 899999999999999776665
No 99
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.3e-08 Score=108.27 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=101.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCC-CCEEEEEe--CC-cEEEEeCCCCeeEEEEeccCCc
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD-GRTLLCGL--HE-SLKVFSWEPIRCHDAVDVGWSR 76 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPd-g~~LvSgs--~D-sIrVWdl~sg~~i~t~~~~~s~ 76 (625)
+|+.+||+|+.|..+.|||....+.+..+..|.+.|.+++|+|- ..+|++|+ .| .|++||..+|.+++.++.+ ++
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQ 389 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQ 389 (484)
T ss_pred CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-Cc
Confidence 68999999999999999999888889999999999999999995 56777765 36 8999999999999887755 44
Q ss_pred eeEEEe-cCCC-EE-EEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccccCcC
Q 006939 77 LSDLNV-HEGK-LL-GCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGNLS 133 (625)
Q Consensus 77 v~~l~~-~dg~-lL-~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~~~~~ 133 (625)
|..+.+ ...+ ++ ..|+.++.|.||+.. ....+..+.||...+-+...++.
T Consensus 390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~p-------s~~~~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 390 VCSLIWSKKYKELLSTHGYSENQITLWKYP-------SMKLVAELLGHTSRVLYLALSPD 442 (484)
T ss_pred eeeEEEcCCCCEEEEecCCCCCcEEEEecc-------ccceeeeecCCcceeEEEEECCC
Confidence 666666 4333 33 556778899999887 35677888999998877665543
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.73 E-value=1.9e-08 Score=107.62 Aligned_cols=103 Identities=18% Similarity=0.333 Sum_probs=94.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
+||++||+|+.|+.|.|||..+.+.+..+.+|.+.|.+++|--.-.-+++++.| ++++|+++....+.++.+|...|..
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~ 291 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLG 291 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceee
Confidence 689999999999999999999999999999999999999998777788999999 9999999988888888889998888
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|.. ..++.+..|+.|.++++|.+.
T Consensus 292 IdaL~reR~vtVGgrDrT~rlwKi~ 316 (479)
T KOG0299|consen 292 IDALSRERCVTVGGRDRTVRLWKIP 316 (479)
T ss_pred echhcccceEEeccccceeEEEecc
Confidence 876 577778888899999999985
No 101
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.73 E-value=5e-08 Score=98.59 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=89.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCe-EEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEE--------
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-------- 70 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~-~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~-------- 70 (625)
|-|++|++|..|+.|.+||+++|+ .+...+.|...|..++|++|..++++++.| +-++||..+-.+++++
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~ 236 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNT 236 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccc
Confidence 457899999999999999999985 466678899999999999999999999999 9999998764443322
Q ss_pred -----------------------------------------------eccCCceeEEEe-cCCCEEEEeeCCCeEEEEec
Q 006939 71 -----------------------------------------------DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 102 (625)
Q Consensus 71 -----------------------------------------------~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv 102 (625)
..|+++++.++| |+|+..++|+.||.|++.-+
T Consensus 237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 578999999999 79999999999999999877
Q ss_pred c
Q 006939 103 D 103 (625)
Q Consensus 103 ~ 103 (625)
+
T Consensus 317 d 317 (327)
T KOG0643|consen 317 D 317 (327)
T ss_pred c
Confidence 6
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.6e-08 Score=108.05 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=103.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCC-CCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEE-EeccCCce
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGP-ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA-VDVGWSRL 77 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~-h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t-~~~~~s~v 77 (625)
++|.+||.|..+|+|.|||..+.+.+..+.+ |...|-+++|+ +..+.+|+.+ .|..||++....+.. +.+|...|
T Consensus 227 ~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeV 304 (484)
T KOG0305|consen 227 PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEV 304 (484)
T ss_pred CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhccccee
Confidence 5899999999999999999999999999998 99999999997 6678889988 999999987665433 66677788
Q ss_pred eEEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccccC
Q 006939 78 SDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGN 131 (625)
Q Consensus 78 ~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~~~ 131 (625)
..+.+ +++++|++|+.|+.+.|||.. .......+..|...+.++.-.
T Consensus 305 CgLkws~d~~~lASGgnDN~~~Iwd~~-------~~~p~~~~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 305 CGLKWSPDGNQLASGGNDNVVFIWDGL-------SPEPKFTFTEHTAAVKALAWC 352 (484)
T ss_pred eeeEECCCCCeeccCCCccceEeccCC-------CccccEEEeccceeeeEeeeC
Confidence 88888 799999999999999999985 345566777787777765533
No 103
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.71 E-value=3.1e-08 Score=112.11 Aligned_cols=97 Identities=18% Similarity=0.256 Sum_probs=87.6
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV 82 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~ 82 (625)
.+||.+..|..|+++|..+.+.++.+.||+..|++++|+|||+||++++.| +|++||+.++.+++.+.+. ..+..+.+
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-~~~~sls~ 625 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-SPCTSLSF 625 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-CcceeeEE
Confidence 457888899999999999999999999999999999999999999999999 9999999999999988766 44667777
Q ss_pred -cCCCEEEEeeCC-CeEEEEe
Q 006939 83 -HEGKLLGCSYNQ-SCVGVWV 101 (625)
Q Consensus 83 -~dg~lL~sg~~D-g~V~vWd 101 (625)
|+|.+|++...| .-|++|.
T Consensus 626 SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 626 SPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCCCCEEEEEEecCceEEEEE
Confidence 899999999887 7899993
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.70 E-value=3.2e-08 Score=110.25 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=94.1
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEecC
Q 006939 6 HFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHE 84 (625)
Q Consensus 6 LASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~~d 84 (625)
++|||.|.|+++|-. +++...+.+|+..|+++.+-|++ .++||+.| +|++|.- +++++++.+|...|..+.+-+
T Consensus 115 ~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~ 189 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD 189 (745)
T ss_pred eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec
Confidence 799999999999965 67778899999999999999988 77899999 9999875 889999999999999999866
Q ss_pred CCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccc
Q 006939 85 GKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSS 127 (625)
Q Consensus 85 g~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~ 127 (625)
+..++++++||.|+.|+++ +..+....||+..+-.
T Consensus 190 ~~~flScsNDg~Ir~w~~~--------ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 190 DSHFLSCSNDGSIRLWDLD--------GEVLLEMHGHTNFVYS 224 (745)
T ss_pred CCCeEeecCCceEEEEecc--------CceeeeeeccceEEEE
Confidence 7678888999999999996 5666666777665543
No 105
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.69 E-value=6.5e-08 Score=100.09 Aligned_cols=101 Identities=11% Similarity=0.227 Sum_probs=91.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCC-CEEEEEeCC-cEEEEeCCCCeeEEEEe---ccCCce
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEPIRCHDAVD---VGWSRL 77 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg-~~LvSgs~D-sIrVWdl~sg~~i~t~~---~~~s~v 77 (625)
.-++|.|+.-|.|+|.|+.++++...+.+|...|..|.|+|+. +++++|+.| +||+|++++..|+.++. +|...|
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence 3578888899999999999999999999999999999999975 678899999 99999999999998874 577888
Q ss_pred eEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 78 SDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 78 ~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+.| .+|..+++++.|..+++|++.
T Consensus 185 LSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 185 LSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred EEEEEcCCCCeeeccCCcceEEEEecC
Confidence 88888 588899999999999999987
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=1e-07 Score=102.31 Aligned_cols=103 Identities=17% Similarity=0.398 Sum_probs=91.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCC---------CCeeEEEE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE---------PIRCHDAV 70 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~---------sg~~i~t~ 70 (625)
|+|.+|+.|...+.+.+|.+.+|.++..+..|-..|+|+.|+-||.+|+||+.| .|.+|++- +-+.+..+
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 689999999999999999999999999999999999999999999999999999 99999873 23445677
Q ss_pred eccCCceeEEEec---CCCEEEEeeCCCeEEEEecc
Q 006939 71 DVGWSRLSDLNVH---EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 71 ~~~~s~v~~l~~~---dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..|.-.|.++.+. ....|.+++.|.++++||+.
T Consensus 171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS 206 (476)
T ss_pred ccCcceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence 7788889999883 33568999999999999998
No 107
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.64 E-value=4e-08 Score=108.23 Aligned_cols=102 Identities=10% Similarity=0.147 Sum_probs=90.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeE-------EEEeCCCCCCeEEEEEcCC-CCEEEEEeCC-cEEEEeCCCCeeEEEEec
Q 006939 2 SGYFHFSGSADRTVKFWDLETFEL-------IGSAGPETSGVRCLTFNPD-GRTLLCGLHE-SLKVFSWEPIRCHDAVDV 72 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~-------i~tl~~h~~~V~sv~fsPd-g~~LvSgs~D-sIrVWdl~sg~~i~t~~~ 72 (625)
|.+.||.|+.|+.|+||.+..+.+ -..+.+|...|+++.|||- ...|++++.| +|++||+.++.....+.+
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g 718 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG 718 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc
Confidence 456799999999999999876543 3457889999999999995 5678899999 999999999988888889
Q ss_pred cCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 73 GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 73 ~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|...|.+++| ++|+.+++.+.||.|+||..+
T Consensus 719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPR 750 (1012)
T ss_pred CcCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence 9999999999 899999999999999999887
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.64 E-value=3.8e-08 Score=110.76 Aligned_cols=102 Identities=13% Similarity=0.284 Sum_probs=90.0
Q ss_pred CCCEEEEEeCCCeEEEEECCC---CeEEEEeCCCCCCeEEEEEcCC-CCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCc
Q 006939 2 SGYFHFSGSADRTVKFWDLET---FELIGSAGPETSGVRCLTFNPD-GRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSR 76 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~t---g~~i~tl~~h~~~V~sv~fsPd-g~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~ 76 (625)
+.++|||++..|.|.+||+.. .+++..|..|...|.+++||+. ..+|++|++| +|++||++....+.++.....-
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES 178 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence 357899999999999999987 5667788999999999999986 4678899999 9999999998888877766677
Q ss_pred eeEEEe--cCCCEEEEeeCCCeEEEEecc
Q 006939 77 LSDLNV--HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 77 v~~l~~--~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.++.| ..+..++++.+.|.+++||++
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLR 207 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeecc
Confidence 888888 478889999999999999999
No 109
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4e-07 Score=93.85 Aligned_cols=106 Identities=14% Similarity=0.235 Sum_probs=94.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC--C-cEEEEeCCCCeeEEEEeccCCce
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH--E-SLKVFSWEPIRCHDAVDVGWSRL 77 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~--D-sIrVWdl~sg~~i~t~~~~~s~v 77 (625)
++|.+|++++.|.+++|||..++++..++..+..+|..++|.-....++.++. | +||..++.+.++++.+.+|...|
T Consensus 24 ~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V 103 (311)
T KOG1446|consen 24 DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRV 103 (311)
T ss_pred CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceE
Confidence 47999999999999999999999999999998899999999877766665554 6 99999999999999999999999
Q ss_pred eEEEe-cCCCEEEEeeCCCeEEEEeccCCc
Q 006939 78 SDLNV-HEGKLLGCSYNQSCVGVWVVDISR 106 (625)
Q Consensus 78 ~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~ 106 (625)
..+.. |-+..+++++.|++|++||++...
T Consensus 104 ~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~ 133 (311)
T KOG1446|consen 104 NSLSVSPKDDTFLSSSLDKTVRLWDLRVKK 133 (311)
T ss_pred EEEEecCCCCeEEecccCCeEEeeEecCCC
Confidence 99998 767888899999999999999443
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.64 E-value=1.5e-07 Score=104.99 Aligned_cols=103 Identities=15% Similarity=0.250 Sum_probs=94.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCC---CCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCc
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGP---ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSR 76 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~---h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~ 76 (625)
|+.+++++++.|+.|+|||++.|+....|++ |.+....+...|.|.|+++.+.| +|.+||+-+|+|+..+.+|...
T Consensus 606 p~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~ 685 (1080)
T KOG1408|consen 606 PTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA 685 (1080)
T ss_pred CCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh
Confidence 6788999999999999999999999999865 55667788899999999988888 9999999999999999999999
Q ss_pred eeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 77 LSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 77 v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|..+.| +|.++|++.+.||+|-||.+.
T Consensus 686 VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 686 VTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eeeeeecccchhheeecCCceEEEEECc
Confidence 999998 899999999999999999877
No 111
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.63 E-value=7.4e-08 Score=103.21 Aligned_cols=122 Identities=18% Similarity=0.233 Sum_probs=102.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEE----EE---e-----------CCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELI----GS---A-----------GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 61 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i----~t---l-----------~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl 61 (625)
||+.+.++++.|++|.-|++.+|+-. .. + ++|...+.+++.++||+||++|+.| .|.||+.
T Consensus 152 ~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~ 231 (479)
T KOG0299|consen 152 PDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDC 231 (479)
T ss_pred ccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecC
Confidence 67889999999999999999887733 11 0 2677789999999999999999999 8999999
Q ss_pred CCCeeEEEEeccCCceeEEEec-CCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 62 EPIRCHDAVDVGWSRLSDLNVH-EGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 62 ~sg~~i~t~~~~~s~v~~l~~~-dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
++.+.+..+.+|...|..+.|. ...-|.+++.|..|++|+++ ...-+.++.||+..+.++.
T Consensus 232 ~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-------~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 232 DTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-------QLSYVETLYGHQDGVLGID 293 (479)
T ss_pred cccchhhcccccccceeeeeeecCccceeeeecCCceEEEehh-------HhHHHHHHhCCccceeeec
Confidence 9999999999999999999994 44568888999999999998 3445677889988876543
No 112
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.63 E-value=3.1e-07 Score=94.00 Aligned_cols=114 Identities=12% Similarity=0.157 Sum_probs=91.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCC---CEEEEEeCC-cEEEEeCCCCeeEEEEeccCCcee
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG---RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLS 78 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg---~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~ 78 (625)
--.|.++|.|.++|+||..|-+....++- .+.|++-+|+|-. +++++|..| .|++.|+.+|.+-.++.+|...|.
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred CceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 44688999999999999999888777654 3678888898853 455677777 999999999999999999999998
Q ss_pred EEEe-c-CCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCC
Q 006939 79 DLNV-H-EGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSE 123 (625)
Q Consensus 79 ~l~~-~-dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~ 123 (625)
.+.+ + ....|++|+.||.|++||++- ....+..+..|..
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRr------asgcf~~lD~hn~ 233 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRR------ASGCFRVLDQHNT 233 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeec------ccceeEEeecccC
Confidence 8888 3 667789999999999999981 1134555555544
No 113
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.62 E-value=1.7e-07 Score=99.18 Aligned_cols=118 Identities=15% Similarity=0.250 Sum_probs=95.2
Q ss_pred EEEEEeCCCeEEEEECCCC---------eEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCC--------C---
Q 006939 5 FHFSGSADRTVKFWDLETF---------ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE--------P--- 63 (625)
Q Consensus 5 lLASGS~D~tVkIWDL~tg---------~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~--------s--- 63 (625)
.||||+.|..|+||-++++ +....+..|+..|.++.|+|+|..++||+++ .+.+|-.. +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 8999999999999987643 2355678999999999999999999999999 99999876 2
Q ss_pred -----CeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 64 -----IRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 64 -----g~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
.....++..|...++++++ +++.++++++-|+.+++||+. .++....+.+|...+....
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-------~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-------AGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-------cceeEeeccccccccceee
Confidence 1112333456677888887 899999999999999999999 5677777788877665544
No 114
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.61 E-value=3.9e-08 Score=104.11 Aligned_cols=101 Identities=16% Similarity=0.308 Sum_probs=88.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
++++.+++++.|+++++|++......+++.||++.|.++.|.-....+++|+.| +|++||+..+.|.+++-.. +.+.+
T Consensus 229 ~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnD 307 (459)
T KOG0288|consen 229 SDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCND 307 (459)
T ss_pred CCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-ccccc
Confidence 468889999999999999999999999999999999999998777669999999 9999999999998876544 45677
Q ss_pred EEecCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|.. .+..+++|..|+.|++||.+
T Consensus 308 I~~-~~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 308 IVC-SISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred eEe-cceeeeecccccceEEEecc
Confidence 764 36678999999999999987
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.60 E-value=1.4e-07 Score=102.13 Aligned_cols=74 Identities=12% Similarity=0.329 Sum_probs=56.4
Q ss_pred CCCCCCeEEEEEcCCCC-EEEEEeCC-cEEEEeCCCCeeE-EEE---e--ccCCceeEEEe-cCCCEEEEeeCCCeEEEE
Q 006939 30 GPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPIRCH-DAV---D--VGWSRLSDLNV-HEGKLLGCSYNQSCVGVW 100 (625)
Q Consensus 30 ~~h~~~V~sv~fsPdg~-~LvSgs~D-sIrVWdl~sg~~i-~t~---~--~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vW 100 (625)
+||...++|.+|+|+.+ .|++++.| ++|+||++..+.+ .++ . +....+....| ++++++++|+.||.|.+|
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 47888999999999864 57788888 9999999865432 222 1 22233445555 799999999999999999
Q ss_pred ecc
Q 006939 101 VVD 103 (625)
Q Consensus 101 dv~ 103 (625)
+..
T Consensus 345 ~~~ 347 (641)
T KOG0772|consen 345 DKG 347 (641)
T ss_pred ecC
Confidence 976
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.57 E-value=9.9e-08 Score=102.98 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=88.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEE--eCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCce
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRL 77 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~t--l~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v 77 (625)
|||+.|++|+.-.+|.||||..-..... +..-.-.+++++.+||.+.+|++..| .|.|||++....++.+.+|....
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 7999999999999999999976554222 33333457888999999999988877 99999999999999999999888
Q ss_pred eEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 78 SDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 78 ~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+|.+ ++|..|-+|+-|++|+-||++
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlr 581 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLR 581 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhh
Confidence 88888 799999999999999999998
No 117
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.5e-07 Score=92.36 Aligned_cols=93 Identities=12% Similarity=0.308 Sum_probs=82.5
Q ss_pred CCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEecCCCEEE
Q 006939 11 ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLG 89 (625)
Q Consensus 11 ~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~~dg~lL~ 89 (625)
.|.+|++-++.+.+.++.+.||...|.+++.+|-+..++|++.| +|++||++..+|.-.+.....++..+. ++|-+++
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfD-p~GLifA 156 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFD-PEGLIFA 156 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeEC-CCCcEEE
Confidence 48999999999999999999999999999999999999999999 999999999999887776655544333 7898888
Q ss_pred EeeCCCeEEEEeccC
Q 006939 90 CSYNQSCVGVWVVDI 104 (625)
Q Consensus 90 sg~~Dg~V~vWdv~~ 104 (625)
.+.....|++||++.
T Consensus 157 ~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 157 LANGSELIKLYDLRS 171 (311)
T ss_pred EecCCCeEEEEEecc
Confidence 888877999999983
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.56 E-value=2.8e-07 Score=94.29 Aligned_cols=101 Identities=13% Similarity=0.338 Sum_probs=86.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEE-EEEeCC-cEEEEeCCCC-eeEEEE---------
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL-LCGLHE-SLKVFSWEPI-RCHDAV--------- 70 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~L-vSgs~D-sIrVWdl~sg-~~i~t~--------- 70 (625)
..++|+|..|-.|++.|+..|.+-+++.||..+|.++.|+|...|+ ++|+.| .|++||++-. -|+.++
T Consensus 158 HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p 237 (397)
T KOG4283|consen 158 HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPP 237 (397)
T ss_pred ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCc
Confidence 4688999999999999999999999999999999999999987765 588888 9999999754 444433
Q ss_pred -----eccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 71 -----DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 71 -----~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+.+++..+++ .++.++++.+.|..+++|+..
T Consensus 238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred cccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 245566777887 689999999999999999887
No 119
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=2.9e-07 Score=95.01 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=86.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCC---CCee-----EEEEec
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE---PIRC-----HDAVDV 72 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~---sg~~-----i~t~~~ 72 (625)
++.+|+|++.|.+|.|||+. |+.+.++......-+..+.+|+|+++++++-. .++||..- .|.. ...+.+
T Consensus 198 ~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 198 NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 57899999999999999999 99999988777777888899999999998887 89999863 2222 234567
Q ss_pred cCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 73 GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 73 ~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|.+.+..++| ++...+++.+.||.+++||++
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 8888888888 688899999999999999998
No 120
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.55 E-value=1.4e-07 Score=100.77 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=86.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCeE---EE------------------EeCCCCCCeEEEEEcCCC-CEEEEEeCC-cEEEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFEL---IG------------------SAGPETSGVRCLTFNPDG-RTLLCGLHE-SLKVF 59 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~---i~------------------tl~~h~~~V~sv~fsPdg-~~LvSgs~D-sIrVW 59 (625)
|+++|-|..|..|.||||.--.. .. ...+|+..|-++.|+-.- +.|+||+.| +|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 78999999999999999853211 01 124788999999998764 578899999 99999
Q ss_pred eCCCCeeEEEEeccCCceeEEEec--CCCEEEEeeCCCeEEEEecc
Q 006939 60 SWEPIRCHDAVDVGWSRLSDLNVH--EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 60 dl~sg~~i~t~~~~~s~v~~l~~~--dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|+.+|+|..++..+..+|..+.|+ ...+|++|+.|++|.++|.+
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 999999999999899999999993 78899999999999999998
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.54 E-value=5.5e-07 Score=92.91 Aligned_cols=117 Identities=18% Similarity=0.265 Sum_probs=87.8
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEec-------cC--
Q 006939 5 FHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV-------GW-- 74 (625)
Q Consensus 5 lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~-------~~-- 74 (625)
.|++|+.||.|.+|+...++++.++++|.+.|+.++.||.|++.++-+.| .+++|++-.|+.-..... .|
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~ 178 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP 178 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC
Confidence 68999999999999999999999999999999999999999999988888 999999866553211100 00
Q ss_pred ------------------------------CceeEEEecCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCC
Q 006939 75 ------------------------------SRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSES 124 (625)
Q Consensus 75 ------------------------------s~v~~l~~~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~ 124 (625)
..+.++.|-++..|++|++|+.|.+||.+ .......+.+|...
T Consensus 179 ~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~d-------s~~~~~~~~AH~~R 251 (362)
T KOG0294|consen 179 QGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTD-------SDTPLTEFLAHENR 251 (362)
T ss_pred CCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccC-------CCccceeeecchhh
Confidence 11233334467778888888888888877 24445566667666
Q ss_pred cccc
Q 006939 125 KSSA 128 (625)
Q Consensus 125 v~~~ 128 (625)
+.++
T Consensus 252 VK~i 255 (362)
T KOG0294|consen 252 VKDI 255 (362)
T ss_pred eeee
Confidence 6544
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=4.7e-07 Score=103.77 Aligned_cols=102 Identities=24% Similarity=0.333 Sum_probs=85.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEE----------
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV---------- 70 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~---------- 70 (625)
+|.++|.||.|..|++-++.+......+.+|.++|.++.|+|.+.+|++.+-| .|+|||+..+.+..++
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 68899999999999999999999999999999999999999999999988777 9999998754331111
Q ss_pred ------------------------------------------eccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 71 ------------------------------------------DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 71 ------------------------------------------~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
....+.+.++.| |+|++|+++..+|.|.|||++
T Consensus 187 ~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 187 LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 111222566777 799999999999999999998
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=6.5e-07 Score=89.68 Aligned_cols=101 Identities=22% Similarity=0.257 Sum_probs=84.3
Q ss_pred CCEEEEEeCCCeEEEEECCCC---eEEEEeCCCCCCeEEEEEc-C-CCCEEEEEeCC-cEEEEeCCCCeeEEE--EeccC
Q 006939 3 GYFHFSGSADRTVKFWDLETF---ELIGSAGPETSGVRCLTFN-P-DGRTLLCGLHE-SLKVFSWEPIRCHDA--VDVGW 74 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg---~~i~tl~~h~~~V~sv~fs-P-dg~~LvSgs~D-sIrVWdl~sg~~i~t--~~~~~ 74 (625)
|+.|||+|.|++|||+..+.. +++..+.||.++|..+.|- | -|.+|++++.| .+.||.-+.|+-.+. +..|.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~ 102 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS 102 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence 789999999999999998764 4678899999999999985 4 58999999999 999999988864332 23456
Q ss_pred CceeEEEe--c-CCCEEEEeeCCCeEEEEecc
Q 006939 75 SRLSDLNV--H-EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 75 s~v~~l~~--~-dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.-++++.+ + -|.+|+|++.||.|.|.+.+
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~ 134 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYD 134 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEc
Confidence 66778877 3 46788999999999999887
No 124
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=7.3e-07 Score=92.11 Aligned_cols=128 Identities=16% Similarity=0.260 Sum_probs=91.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeE-----EE-------------------------------Ee---------------
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFEL-----IG-------------------------------SA--------------- 29 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~-----i~-------------------------------tl--------------- 29 (625)
.||+.|||++.|++|+||+++.+.. ++ .|
T Consensus 96 SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v 175 (420)
T KOG2096|consen 96 SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFV 175 (420)
T ss_pred CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccc
Confidence 3899999999999999999865431 11 00
Q ss_pred --------CCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEE
Q 006939 30 --------GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGV 99 (625)
Q Consensus 30 --------~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~v 99 (625)
+.|.-.+..+..--.+.++.+++.| .|.+|++. |+.+..++.......+.++ |+|+++++++.---|++
T Consensus 176 ~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkV 254 (420)
T KOG2096|consen 176 HIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKV 254 (420)
T ss_pred cccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceE
Confidence 0122233334444445688888888 89999998 8888877776666666666 89999988888889999
Q ss_pred EeccCCccccc-cccceeEEeccCCCccccc
Q 006939 100 WVVDISRIEPY-TIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 100 Wdv~~~~~~~~-~~~~i~~l~gHs~~v~~~~ 129 (625)
|.+-..+-..+ +...+..|.||+..+....
T Consensus 255 wE~~f~kdG~fqev~rvf~LkGH~saV~~~a 285 (420)
T KOG2096|consen 255 WEPIFTKDGTFQEVKRVFSLKGHQSAVLAAA 285 (420)
T ss_pred EEEEeccCcchhhhhhhheeccchhheeeee
Confidence 98774443322 4556788999988876544
No 125
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.49 E-value=3e-07 Score=101.83 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=79.1
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEE--eCCCCCCeEEEEEcCCCC-EEEEEeCC-cEEEEeCCCCe-------e---
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPIR-------C--- 66 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~t--l~~h~~~V~sv~fsPdg~-~LvSgs~D-sIrVWdl~sg~-------~--- 66 (625)
|-+.+|++++-|.|+++||+.++.+++. +.||+..|.++||.|+.. .|++|+.| .|.|||.+... |
T Consensus 110 pge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~ 189 (720)
T KOG0321|consen 110 PGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI 189 (720)
T ss_pred CCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence 3456789999999999999999999887 999999999999999765 56689999 99999986321 0
Q ss_pred -----------------EEEEeccC----CceeEEEecCCCEEEEeeC-CCeEEEEecc
Q 006939 67 -----------------HDAVDVGW----SRLSDLNVHEGKLLGCSYN-QSCVGVWVVD 103 (625)
Q Consensus 67 -----------------i~t~~~~~----s~v~~l~~~dg~lL~sg~~-Dg~V~vWdv~ 103 (625)
+.....+. +.|..+.|.|..+|++++. |+.|+|||++
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred hccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence 00011111 2245566777778877776 9999999998
No 126
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.49 E-value=8.8e-07 Score=91.00 Aligned_cols=99 Identities=18% Similarity=0.320 Sum_probs=80.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCC--EEEEEeCC-cEEEEeCCCCeeEEEEeccCCcee
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR--TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLS 78 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~--~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~ 78 (625)
||..+++|+.|+.+++|||.+++ ..++..|.++|+++.|-+... +|++|++| +||.||.+....+.++... ..++
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvY 160 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVY 160 (347)
T ss_pred CCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceee
Confidence 78899999999999999999995 667888999999999987665 89999999 9999999987776666543 2344
Q ss_pred EEEecCCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+.. ..-+++.+..+..|.+|+++
T Consensus 161 a~Dv-~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 161 AADV-LYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred ehhc-cCceeEEEecCCcEEEEEcC
Confidence 4433 23467777788899999986
No 127
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.48 E-value=5e-07 Score=95.00 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=90.6
Q ss_pred EEEEeCCCeEEEEECCCCeEE---EEeCCCCCCeEEEEEcCCC-CEEEEEeCC-cEEEEeCCCC---eeEEEEeccCCce
Q 006939 6 HFSGSADRTVKFWDLETFELI---GSAGPETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEPI---RCHDAVDVGWSRL 77 (625)
Q Consensus 6 LASGS~D~tVkIWDL~tg~~i---~tl~~h~~~V~sv~fsPdg-~~LvSgs~D-sIrVWdl~sg---~~i~t~~~~~s~v 77 (625)
|+||..-+.|++|...+|.-. ..+.+|+..|-.++|+|.. ..|+||+.| +|+|||.+.+ .|+.+ ..|.+-|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDV 305 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDV 305 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCce
Confidence 567777778999998887643 3467799999999999975 467799999 9999999987 45544 5666778
Q ss_pred eEEEec-CCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 78 SDLNVH-EGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 78 ~~l~~~-dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
+.|.|. .-.+|++|++||+++|||++.-+ .++.+..+..|...+.+..
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~----~~~pVA~fk~Hk~pItsie 354 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFK----SGQPVATFKYHKAPITSIE 354 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhcc----CCCcceeEEeccCCeeEEE
Confidence 888883 33489999999999999998322 2356677777777665543
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=1.3e-06 Score=90.05 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=79.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
|...+++|+.|+.|+.+|+.++.. ..+..|..+|+||.+.+-...+++|++| +|++||.+...+..++.... .|..+
T Consensus 64 d~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~ 141 (323)
T KOG1036|consen 64 DESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM 141 (323)
T ss_pred CCceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEE
Confidence 456788999999999999988774 3567799999999999988899999999 99999998755555444332 56665
Q ss_pred EecCCCEEEEeeCCCeEEEEecc
Q 006939 81 NVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 81 ~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.. .+..|+.|..|..|.+||++
T Consensus 142 ~v-~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 142 DV-SGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred ec-cCCEEEEeecCceEEEEEcc
Confidence 54 56677788888999999998
No 129
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.47 E-value=7.8e-07 Score=89.86 Aligned_cols=102 Identities=16% Similarity=0.253 Sum_probs=87.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEE--EeCCCCCCeEEEEEcCC-CCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCce
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIG--SAGPETSGVRCLTFNPD-GRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRL 77 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~--tl~~h~~~V~sv~fsPd-g~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v 77 (625)
+|..||+|+.|+++++|+++...... .+.+|++.|-.++|+|. ...|++++.| +|++||.+.++|...+......+
T Consensus 31 ~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni 110 (313)
T KOG1407|consen 31 DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI 110 (313)
T ss_pred cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce
Confidence 78999999999999999998775543 35789999999999885 5678888888 99999999999988777666666
Q ss_pred eEEEecCCCEEEEeeCCCeEEEEecc
Q 006939 78 SDLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 78 ~~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.-...|+|.+++.+..|..|.+.|.+
T Consensus 111 ~i~wsp~g~~~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 111 NITWSPDGEYIAVGNKDDRITFIDAR 136 (313)
T ss_pred EEEEcCCCCEEEEecCcccEEEEEec
Confidence 65556999999999999999999988
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.45 E-value=2.6e-06 Score=86.69 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=77.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEE-EEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL-LCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~L-vSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
+.++++++.|++|++||+.+++++..+.++. .+.++.|+|+|..+ ++++.+ .|++||..+++....+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 5689999999999999999999988887664 47889999999876 456666 899999999887766554433 3345
Q ss_pred Ee-cCCCEEE-EeeCCCeEEEEecc
Q 006939 81 NV-HEGKLLG-CSYNQSCVGVWVVD 103 (625)
Q Consensus 81 ~~-~dg~lL~-sg~~Dg~V~vWdv~ 103 (625)
.+ ++++.++ ++..++.|++||+.
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~ 103 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIE 103 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECC
Confidence 55 6777664 45668999999987
No 131
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.44 E-value=2.2e-07 Score=97.24 Aligned_cols=103 Identities=14% Similarity=0.281 Sum_probs=83.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC-eEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEec-cCCce
Q 006939 1 MSGYFHFSGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV-GWSRL 77 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg-~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~-~~s~v 77 (625)
|++..|.+|+.|..+..||++.- ..+..+.+|.+.|.++.|+|.|.-|++|+.| +|+||..+.+..-++... .-..|
T Consensus 239 PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V 318 (433)
T KOG0268|consen 239 PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHV 318 (433)
T ss_pred ccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhhee
Confidence 56788999999999999998764 3577789999999999999999999999999 999999987665333321 11223
Q ss_pred eEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 78 SDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 78 ~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.++.+ .|.+++++|++|+.|++|-..
T Consensus 319 ~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 319 FCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred eEEEEeccccEEEecCCCcceeeeecc
Confidence 34444 699999999999999999655
No 132
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.43 E-value=1.1e-06 Score=93.20 Aligned_cols=100 Identities=27% Similarity=0.345 Sum_probs=87.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC----CCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPE----TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWS 75 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h----~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s 75 (625)
++|..+.+.+-|.++++.|+++.+..+++... ...+..+.|+|++.|+++|+.| .|+||++.++++...+....+
T Consensus 351 ~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s 430 (459)
T KOG0288|consen 351 MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS 430 (459)
T ss_pred cCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCC
Confidence 47888889999999999999999988876432 2458899999999999999999 999999999999988876555
Q ss_pred c--eeEEEe-cCCCEEEEeeCCCeEEEE
Q 006939 76 R--LSDLNV-HEGKLLGCSYNQSCVGVW 100 (625)
Q Consensus 76 ~--v~~l~~-~dg~lL~sg~~Dg~V~vW 100 (625)
. +..+.| +.|..|++++.++.+.+|
T Consensus 431 ~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 431 NAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CcceEEEEEcCCCchhhcccCCcceEec
Confidence 5 888888 789999999999999999
No 133
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=3e-06 Score=83.99 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=86.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCee----EEEEeccCC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC----HDAVDVGWS 75 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~----i~t~~~~~s 75 (625)
|.|++|++|-.|..-.+||++.+..+..+.+|...|+|+.|+|...++++|+.| .|++-|+..... +-++..|..
T Consensus 241 psgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd 320 (350)
T KOG0641|consen 241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD 320 (350)
T ss_pred CCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC
Confidence 789999999999999999999999999999999999999999999999999999 999999875322 233344666
Q ss_pred ceeEEEe-cCCCEEEEeeCCCeEEEEec
Q 006939 76 RLSDLNV-HEGKLLGCSYNQSCVGVWVV 102 (625)
Q Consensus 76 ~v~~l~~-~dg~lL~sg~~Dg~V~vWdv 102 (625)
++..+.| +...-+++++.|.++.+|-+
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEEecc
Confidence 6677777 46666788899999999965
No 134
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.39 E-value=6.9e-06 Score=83.60 Aligned_cols=102 Identities=22% Similarity=0.160 Sum_probs=75.3
Q ss_pred CCCCEEE-EEeCCCeEEEEECCCCeEEEEeCCCCC-------CeEEEEEcCCCCEEEEE-eCC-cEEEEeCCCCeeEEEE
Q 006939 1 MSGYFHF-SGSADRTVKFWDLETFELIGSAGPETS-------GVRCLTFNPDGRTLLCG-LHE-SLKVFSWEPIRCHDAV 70 (625)
Q Consensus 1 PdG~lLA-SGS~D~tVkIWDL~tg~~i~tl~~h~~-------~V~sv~fsPdg~~LvSg-s~D-sIrVWdl~sg~~i~t~ 70 (625)
|||++|+ ++..|+.|++||+++++++..+..+.. ....+.|+|++++++.+ +.+ .+.+||.++++....+
T Consensus 166 ~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~ 245 (300)
T TIGR03866 166 ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL 245 (300)
T ss_pred CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 5788774 555799999999999988776643321 23468899999986543 334 8999999988877654
Q ss_pred eccCCceeEEEe-cCCCEEEEe-eCCCeEEEEecc
Q 006939 71 DVGWSRLSDLNV-HEGKLLGCS-YNQSCVGVWVVD 103 (625)
Q Consensus 71 ~~~~s~v~~l~~-~dg~lL~sg-~~Dg~V~vWdv~ 103 (625)
..+ ..+..+.| +++++|+++ ..++.|.+||++
T Consensus 246 ~~~-~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 246 LVG-QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred EeC-CCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 333 34667777 788888775 568999999998
No 135
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=3.2e-06 Score=84.73 Aligned_cols=101 Identities=15% Similarity=0.227 Sum_probs=79.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEec-------
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV------- 72 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~------- 72 (625)
|.+.-++.++-|+.+.-||+++|...+.+.||++.|.++.--.....+++|+.| ++||||.++++|..++..
T Consensus 124 P~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~l 203 (325)
T KOG0649|consen 124 PSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLL 203 (325)
T ss_pred cCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhc
Confidence 344455556689999999999999999999999999999885556678899999 999999999999877632
Q ss_pred --cCCc-eeEEEecCCCEEEEeeCCCeEEEEecc
Q 006939 73 --GWSR-LSDLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 73 --~~s~-v~~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+|+. +..++ -+..+|+||+. ..+.+|.++
T Consensus 204 Rp~~g~wigala-~~edWlvCGgG-p~lslwhLr 235 (325)
T KOG0649|consen 204 RPDWGKWIGALA-VNEDWLVCGGG-PKLSLWHLR 235 (325)
T ss_pred CcccCceeEEEe-ccCceEEecCC-CceeEEecc
Confidence 3433 33444 35668888776 579999988
No 136
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.39 E-value=4.6e-06 Score=82.56 Aligned_cols=98 Identities=20% Similarity=0.310 Sum_probs=76.5
Q ss_pred CCCCEEEE--EeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC----cEEEEeCCCCeeEEEEeccC
Q 006939 1 MSGYFHFS--GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEPIRCHDAVDVGW 74 (625)
Q Consensus 1 PdG~lLAS--GS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D----sIrVWdl~sg~~i~t~~~~~ 74 (625)
|+|..||. |..+..|.|||++ ++.+..+. ...+..|.|+|+|++++.|+.+ .|.+||.+..+.+.....
T Consensus 69 P~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-- 143 (194)
T PF08662_consen 69 PNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-- 143 (194)
T ss_pred cCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--
Confidence 67877654 4577899999997 77777765 4567899999999999988754 499999998887765543
Q ss_pred CceeEEEe-cCCCEEEEeeC------CCeEEEEecc
Q 006939 75 SRLSDLNV-HEGKLLGCSYN------QSCVGVWVVD 103 (625)
Q Consensus 75 s~v~~l~~-~dg~lL~sg~~------Dg~V~vWdv~ 103 (625)
..+..+.+ |+|++++++.. |+.++||++.
T Consensus 144 ~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 144 SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 23567777 89999988754 7889999987
No 137
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.39 E-value=1.1e-06 Score=92.89 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=81.5
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEe--ccCCceeEE
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVD--VGWSRLSDL 80 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~--~~~s~v~~l 80 (625)
+.|+|++.|.+|.||++.+|+.+.++. |...|+++.|+.||.+|++++.| .|||||.+.++.+..-. .+......+
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai 223 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI 223 (472)
T ss_pred hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence 467899999999999999999988888 99999999999999999999999 99999999998765432 233444555
Q ss_pred EecCCCEEEEee---CCCeEEEEecc
Q 006939 81 NVHEGKLLGCSY---NQSCVGVWVVD 103 (625)
Q Consensus 81 ~~~dg~lL~sg~---~Dg~V~vWdv~ 103 (625)
+..++.++.+|. .+..+-+||..
T Consensus 224 fl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 224 FLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred EeccCceeeeccccccccceeccCcc
Confidence 557888776653 46689999876
No 138
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.37 E-value=8.8e-07 Score=88.98 Aligned_cols=67 Identities=27% Similarity=0.411 Sum_probs=62.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEe-CCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH 67 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl-~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i 67 (625)
|+..+|++|+.|..+..||+.+|+.+..+ ++|.++|.|+.|+|||...++|+.| +|++|...+++..
T Consensus 234 P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 234 PKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 67789999999999999999999999997 9999999999999999999999999 9999998876643
No 139
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.36 E-value=1.7e-06 Score=89.58 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=82.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC--cEEEEeCCCCee-EEEEeccCC-ce
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRC-HDAVDVGWS-RL 77 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D--sIrVWdl~sg~~-i~t~~~~~s-~v 77 (625)
+-..+|.|+.-..+-||.-.....+..+.+|.++|+-++|.+||+.|++|+.. .|.+||++..+- +..+..+.. ..
T Consensus 219 ~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TN 298 (406)
T KOG2919|consen 219 DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTN 298 (406)
T ss_pred CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCcc
Confidence 34578999999999999888888899999999999999999999999999873 899999985432 222222222 33
Q ss_pred eEEEe---cCCCEEEEeeCCCeEEEEecc
Q 006939 78 SDLNV---HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 78 ~~l~~---~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..|.| +.+++|++|+.||.|++||++
T Consensus 299 QRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 299 QRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred ceEEEecCCCCceeeccCCCccEEEEecC
Confidence 45555 689999999999999999988
No 140
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=1.5e-06 Score=92.57 Aligned_cols=103 Identities=23% Similarity=0.331 Sum_probs=82.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCCCeeEEEE----------
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV---------- 70 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~i~t~---------- 70 (625)
.||..+++|+.||++|+|+...-..+.....|...|.++.|+|||.+|++-+.|..+||+.++|.++...
T Consensus 154 ~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~ 233 (398)
T KOG0771|consen 154 GDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFS 233 (398)
T ss_pred CCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhh
Confidence 4789999999999999999887777777788889999999999999999988889999999876221100
Q ss_pred ----------------------------e-c--c-------------CCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 71 ----------------------------D-V--G-------------WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 71 ----------------------------~-~--~-------------~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
. . + ...+..+.+ .+|++++.|..||.|.|++..
T Consensus 234 ~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~ 311 (398)
T KOG0771|consen 234 SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK 311 (398)
T ss_pred hceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEec
Confidence 0 0 1 123556666 689999999999999999876
No 141
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=1.3e-06 Score=95.49 Aligned_cols=103 Identities=18% Similarity=0.314 Sum_probs=85.1
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEe-CCCCCCeEEEEEcCC--CCEEEEEeCC-cEEEEeCCC----------Cee
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPD--GRTLLCGLHE-SLKVFSWEP----------IRC 66 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl-~~h~~~V~sv~fsPd--g~~LvSgs~D-sIrVWdl~s----------g~~ 66 (625)
.||.+|++||.|..+.|||.-..++++.+ .||+..|+++.|-|. .+++++|..| .|+|||+.. ...
T Consensus 60 ~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~ 139 (758)
T KOG1310|consen 60 ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEET 139 (758)
T ss_pred CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccch
Confidence 37999999999999999999888888776 789999999999984 5678899999 899999974 112
Q ss_pred EEEEeccCCceeEEEe-cCC-CEEEEeeCCCeEEEEecc
Q 006939 67 HDAVDVGWSRLSDLNV-HEG-KLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 67 i~t~~~~~s~v~~l~~-~dg-~lL~sg~~Dg~V~vWdv~ 103 (625)
...+..|...+..|+. +++ ..+.+++.||+++-||++
T Consensus 140 ~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 140 TRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred hhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence 3344567777778877 444 678899999999999998
No 142
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=2.2e-06 Score=94.04 Aligned_cols=102 Identities=18% Similarity=0.240 Sum_probs=82.5
Q ss_pred CCCEEEEEeCCCeEEEEECCC--------CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCC--------
Q 006939 2 SGYFHFSGSADRTVKFWDLET--------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI-------- 64 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~t--------g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg-------- 64 (625)
-...|++|+.|+++++|.|+. .+.+.++.+|.++|.|+++.+.+..+++|+.| +|++|++...
T Consensus 305 sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d 384 (577)
T KOG0642|consen 305 SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD 384 (577)
T ss_pred CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC
Confidence 355789999999999999932 45688999999999999999999999999999 9999966421
Q ss_pred --eeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 65 --RCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 65 --~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
....++.+|...+..+++ .....|++++.||+|+.|...
T Consensus 385 p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 385 PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred cchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence 123455677777777777 355568888899999999765
No 143
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.32 E-value=1.8e-06 Score=87.48 Aligned_cols=69 Identities=16% Similarity=0.434 Sum_probs=61.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEec
Q 006939 34 SGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 102 (625)
Q Consensus 34 ~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv 102 (625)
-+|..+.+-||++.++++++| .||||.|++...+.++..|...|.+++| ++..+++.++.|+.|.+|++
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 345566677999999999999 9999999999999888888899999999 67789999999999999975
No 144
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.31 E-value=1.7e-06 Score=90.81 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=76.3
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC-------------------
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP------------------- 63 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s------------------- 63 (625)
..+|||+.||.|+|||+..-+|+.+++.|.+.|+.|++.. ..++++++| +|+.|..+.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence 4579999999999999999999999999999999999976 567788888 999998431
Q ss_pred --------CeeEEEE-----------eccCCceeEEEe-c-CCCEEEEeeCCCeEEEEecc
Q 006939 64 --------IRCHDAV-----------DVGWSRLSDLNV-H-EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 64 --------g~~i~t~-----------~~~~s~v~~l~~-~-dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|+.+.++ .-+...+..+.| + +..+|+++..|+.|.+||++
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R 218 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR 218 (433)
T ss_pred ccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc
Confidence 2222222 222334455666 3 56788999999999999998
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.29 E-value=9.6e-07 Score=91.60 Aligned_cols=99 Identities=16% Similarity=0.276 Sum_probs=75.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEe---CCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEE----------
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSA---GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD---------- 68 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl---~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~---------- 68 (625)
-+++++||.|.+||+|++++..|+..+ +||.+.|.++.|+++|.+++||+.| +|++|++...+...
T Consensus 148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~ 227 (385)
T KOG1034|consen 148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP 227 (385)
T ss_pred CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence 468999999999999999999997664 7899999999999999999999999 99999997322100
Q ss_pred ------------------EEeccCCceeEEEecCCCEEEEeeCCCeEEEEec
Q 006939 69 ------------------AVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 102 (625)
Q Consensus 69 ------------------t~~~~~s~v~~l~~~dg~lL~sg~~Dg~V~vWdv 102 (625)
+-+.|..+|.++.|. |.++++-+-++.|..|-.
T Consensus 228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-GDFILSKSCENAIVCWKP 278 (385)
T ss_pred CCccCcCCccccccccccccccccchHHHHHHH-hhheeecccCceEEEEec
Confidence 112333444444432 566777777788999966
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=9.7e-06 Score=83.67 Aligned_cols=102 Identities=15% Similarity=0.234 Sum_probs=81.4
Q ss_pred CCCEEEEEeCCCeEEEEECCC----CeEEEEeCCCCCCeEEEEEcCC--CCEEEEEeCC-cEEEEeCCC--Cee------
Q 006939 2 SGYFHFSGSADRTVKFWDLET----FELIGSAGPETSGVRCLTFNPD--GRTLLCGLHE-SLKVFSWEP--IRC------ 66 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~t----g~~i~tl~~h~~~V~sv~fsPd--g~~LvSgs~D-sIrVWdl~s--g~~------ 66 (625)
-|+.+|||+.|.+|+|||.+. ..+-...+.|.+.|..|.|-+- |+.+++++.| ++.||.-.. .++
T Consensus 24 ~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv 103 (361)
T KOG2445|consen 24 YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWV 103 (361)
T ss_pred cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeE
Confidence 489999999999999999753 4566778999999999998653 8899999999 999998521 111
Q ss_pred -EEEEeccCCceeEEEe---cCCCEEEEeeCCCeEEEEecc
Q 006939 67 -HDAVDVGWSRLSDLNV---HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 67 -i~t~~~~~s~v~~l~~---~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..++.-..+.+.++.| +-|..|++++.||.++||+.-
T Consensus 104 ~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~ 144 (361)
T KOG2445|consen 104 RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAP 144 (361)
T ss_pred EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecC
Confidence 1234445567889988 578889999999999999764
No 147
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.28 E-value=1.9e-06 Score=95.40 Aligned_cols=101 Identities=21% Similarity=0.288 Sum_probs=82.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEE------EeCCCCCCeEEEEEcCCC-CEEEEEeCCcEEEEeCCCCeeEEEEeccCC
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIG------SAGPETSGVRCLTFNPDG-RTLLCGLHESLKVFSWEPIRCHDAVDVGWS 75 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~------tl~~h~~~V~sv~fsPdg-~~LvSgs~DsIrVWdl~sg~~i~t~~~~~s 75 (625)
..+|||||.|..|+||.+..|.... .+.+..-.|-|+.|||.. .+++++..++++|||+.+++.+..+..|..
T Consensus 92 D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d 171 (1012)
T KOG1445|consen 92 DELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTD 171 (1012)
T ss_pred hhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCch
Confidence 4689999999999999998654321 133344568899999964 467788888999999999998877777877
Q ss_pred ceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 76 RLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 76 ~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.|....| .||++|++++.|..|+|||.+
T Consensus 172 ~vQSa~WseDG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 172 KVQSADWSEDGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred hhhccccccCCceEeeecCCcceEEeCCc
Confidence 7777777 699999999999999999988
No 148
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=3e-06 Score=85.04 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=88.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeE--EEEeCCCCCCeEEEEEcCC--CCEEEEEeCC-cEEEEeCCCC-e-e-EEEEecc
Q 006939 2 SGYFHFSGSADRTVKFWDLETFEL--IGSAGPETSGVRCLTFNPD--GRTLLCGLHE-SLKVFSWEPI-R-C-HDAVDVG 73 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~--i~tl~~h~~~V~sv~fsPd--g~~LvSgs~D-sIrVWdl~sg-~-~-i~t~~~~ 73 (625)
-|.+||+++.|+.|.||.-+.|.- .+....|...|.+|+|-|. |-.|++++.| .|.|.+.+.. . + ..+...|
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 489999999999999999887643 4456789999999999996 5678888888 9999887643 1 1 1122233
Q ss_pred CCceeEEEe-c---CC-----------CEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccccCc
Q 006939 74 WSRLSDLNV-H---EG-----------KLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGNL 132 (625)
Q Consensus 74 ~s~v~~l~~-~---dg-----------~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~~~~ 132 (625)
.-.|+.+.+ + .| +.|++|+-|+.|+||..+.. .+ ..-..|.+|+++++...-.+
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~---~w--~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD---SW--KLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc---ch--hhhhhhhhcchhhhhhhhcc
Confidence 333444433 1 12 56999999999999998721 11 12234899999998766444
No 149
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.23 E-value=3.2e-06 Score=86.53 Aligned_cols=101 Identities=20% Similarity=0.242 Sum_probs=79.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe-CCCCCCeEEEEEcCCCC-EEEEEeCC-cEEEEeCCCC-eeEEEEeccCCce
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPI-RCHDAVDVGWSRL 77 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl-~~h~~~V~sv~fsPdg~-~LvSgs~D-sIrVWdl~sg-~~i~t~~~~~s~v 77 (625)
||..+++.+ |+++..||+++.++...+ ..|...|+.+.|+|+-. +|++|++| .|++||.+.- ..+..+..|...+
T Consensus 183 dgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv 261 (370)
T KOG1007|consen 183 DGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV 261 (370)
T ss_pred ccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence 677777764 889999999998887776 56778899999999854 67788888 9999999853 3455555554455
Q ss_pred eEEEe--cCCCEEEEeeCCCeEEEEecc
Q 006939 78 SDLNV--HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 78 ~~l~~--~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+.| ..++++++|+.|..|.+|...
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEecc
Confidence 56666 367889999999999999876
No 150
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=3.1e-06 Score=91.10 Aligned_cols=129 Identities=12% Similarity=0.150 Sum_probs=103.1
Q ss_pred CEEEEEe-CCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEE
Q 006939 4 YFHFSGS-ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 81 (625)
Q Consensus 4 ~lLASGS-~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~ 81 (625)
.+++++. .-..+.+|.+........+-.-.+.|.|+.-+|+|.+++.|+-- .|.+|.+.+|..+.++..|...+.++.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK 130 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence 3455554 45578899987766555444556889999999999999988554 999999999999999999999999999
Q ss_pred e-cCCCEEEEeeCCCeEEEEecc--CCccccccccceeEEeccCCCccccccCc
Q 006939 82 V-HEGKLLGCSYNQSCVGVWVVD--ISRIEPYTIGSVTRVNGLSESKSSASGNL 132 (625)
Q Consensus 82 ~-~dg~lL~sg~~Dg~V~vWdv~--~~~~~~~~~~~i~~l~gHs~~v~~~~~~~ 132 (625)
| .||.++++|+.||.|.+|++- ...........+..+.+|.-.+....+..
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~ 184 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGS 184 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecC
Confidence 9 799999999999999999876 33333346677888999988887765443
No 151
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.22 E-value=1.9e-05 Score=81.01 Aligned_cols=102 Identities=23% Similarity=0.412 Sum_probs=84.0
Q ss_pred CCCCEEEEEeC-CCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCC-EEEEEeCC-cEEEEeCCCCeeEE-EEeccCCc
Q 006939 1 MSGYFHFSGSA-DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPIRCHD-AVDVGWSR 76 (625)
Q Consensus 1 PdG~lLASGS~-D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~-~LvSgs~D-sIrVWdl~sg~~i~-t~~~~~s~ 76 (625)
|++.++++++. |+.+++|++..+..+..+.+|...|.++.|+|++. .+++++.| .|++||...+.+.. .+..+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 244 (466)
T COG2319 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244 (466)
T ss_pred CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc
Confidence 56778888885 99999999999899999999999999999999998 55565777 89999988777776 56655554
Q ss_pred eeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 77 LSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 77 v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
. ...+ +++.++++++.|+.+++|+..
T Consensus 245 ~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 245 V-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred e-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 3 2234 666788899999999999988
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.18 E-value=3.4e-06 Score=89.57 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=89.5
Q ss_pred CCCCEEEEEeCCCeEEEEECC--------C--------CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC
Q 006939 1 MSGYFHFSGSADRTVKFWDLE--------T--------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 63 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~--------t--------g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s 63 (625)
|+|.+||||+.++.|.+|-.. + ......+.+|...|+.++|+||+.++++|+.| ++++||+..
T Consensus 75 p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 75 PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc
Confidence 689999999999999999765 3 22345678899999999999999999999999 999999999
Q ss_pred CeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEeccC
Q 006939 64 IRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 104 (625)
Q Consensus 64 g~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~ 104 (625)
|..+.++..|-..+..+++ +.++++++-+.|...+++.+.+
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence 9999998888888888888 7888888888888777776663
No 153
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.17 E-value=7.7e-07 Score=101.00 Aligned_cols=98 Identities=15% Similarity=0.303 Sum_probs=90.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
.|.++++|+.|+.||||..+++.|+..+.||.+.++.++.+.....+++++.| .|+||-+..+..+..+.+|.+.|..+
T Consensus 201 tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtai 280 (1113)
T KOG0644|consen 201 TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAI 280 (1113)
T ss_pred ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeee
Confidence 58899999999999999999999999999999999999999888888899999 89999999999998888899999999
Q ss_pred Ee-cCCCEEEEeeCCCeEEEEecc
Q 006939 81 NV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 81 ~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+| |-. +++.||++++||.+
T Consensus 281 afsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 281 AFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred ccCccc----cCCCCCceEecccc
Confidence 98 332 78899999999998
No 154
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.17 E-value=7.3e-06 Score=91.94 Aligned_cols=118 Identities=16% Similarity=0.281 Sum_probs=90.8
Q ss_pred CEEEEEeCCCeEEEEECCC-CeEEEEeCCCCCCeEEEEE-----------------------------------------
Q 006939 4 YFHFSGSADRTVKFWDLET-FELIGSAGPETSGVRCLTF----------------------------------------- 41 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~t-g~~i~tl~~h~~~V~sv~f----------------------------------------- 41 (625)
++||+|+.|+.|++||+.. ..++.++.+|...|++|.|
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k 596 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK 596 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccccc
Confidence 6789999999999999753 3344555555555555555
Q ss_pred --------cCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccC---CceeEEEe-cCCCEEEEeeCCCeEEEEeccCCccc
Q 006939 42 --------NPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW---SRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 108 (625)
Q Consensus 42 --------sPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~---s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~ 108 (625)
.|...+++++++| .|+||++++|+..+.|.+.. +.+..+.. |.|-+|++++.|.++.+||+-
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~----- 671 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV----- 671 (1080)
T ss_pred ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec-----
Confidence 4555578888999 99999999999998886532 22333333 899999999999999999987
Q ss_pred cccccceeEEeccCCCcccc
Q 006939 109 PYTIGSVTRVNGLSESKSSA 128 (625)
Q Consensus 109 ~~~~~~i~~l~gHs~~v~~~ 128 (625)
.+..+.++.||++.+.+.
T Consensus 672 --sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 672 --SGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred --cchhhhhhcCcchheeee
Confidence 788899999999988765
No 155
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=1e-05 Score=87.11 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=84.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEe-CCcEEEEeCCCCeeEEEEeccCC-cee
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-HESLKVFSWEPIRCHDAVDVGWS-RLS 78 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs-~DsIrVWdl~sg~~i~t~~~~~s-~v~ 78 (625)
|++++||..+..|.|.|-...++++|++++.. +.|..++|+.||+.|+..+ .+.|.+||++...|+..+....+ .-.
T Consensus 313 hd~~fia~~G~~G~I~lLhakT~eli~s~Kie-G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt 391 (514)
T KOG2055|consen 313 HDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT 391 (514)
T ss_pred CCCCeEEEcccCceEEeehhhhhhhhheeeec-cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence 68899999999999999999999999998865 7799999999998776554 44999999999999887753322 122
Q ss_pred EEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.++. .++.+|++|+..|.|.|||.+
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccc
Confidence 3443 689999999999999999976
No 156
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=1.2e-05 Score=82.92 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=78.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|.+..|+.++.|+++++||....++...+. |..++.+++|.++. .+++|+-| .|+++|++++.... +..|-..+.+
T Consensus 23 ~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~c 99 (323)
T KOG1036|consen 23 PSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRC 99 (323)
T ss_pred CcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc-eEEEeccCceEEEEEecCCccee-eccCCCceEE
Confidence 456777888899999999999886555554 78999999999754 55677777 99999999876543 3345566777
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.. +....+++|++|+.|++||.+
T Consensus 100 i~~~~~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 100 IEYSYEVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred EEeeccCCeEEEcccCccEEEEecc
Confidence 766 556678899999999999998
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.15 E-value=5.1e-06 Score=92.34 Aligned_cols=105 Identities=7% Similarity=0.073 Sum_probs=87.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeE------EEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEE--Eec
Q 006939 2 SGYFHFSGSADRTVKFWDLETFEL------IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA--VDV 72 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~------i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t--~~~ 72 (625)
..++||.+..||.|.++|...... +..+..|...|..+.|-|....|++++.| ++++||++.+++... +-+
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 357899999999999999875443 35567899999999999977788999999 999999999888755 667
Q ss_pred cCCceeEEEe--cCCCEEEEeeCCCeEEEEeccCCc
Q 006939 73 GWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISR 106 (625)
Q Consensus 73 ~~s~v~~l~~--~dg~lL~sg~~Dg~V~vWdv~~~~ 106 (625)
|..-+..++| .+...+++|+.||.|.|||++...
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 7777888887 367788999999999999998443
No 158
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.15 E-value=2.1e-05 Score=82.93 Aligned_cols=92 Identities=18% Similarity=0.300 Sum_probs=81.0
Q ss_pred CCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC--cEEEEeCCCCeeEEEEeccC--CceeEEEe-cCCC
Q 006939 12 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGW--SRLSDLNV-HEGK 86 (625)
Q Consensus 12 D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D--sIrVWdl~sg~~i~t~~~~~--s~v~~l~~-~dg~ 86 (625)
-|.|.|||+.+-+.+..+..|.+.+.|++|+++|.+++++++. -||||.+..|..+..+.-+. ..+..+.| ++++
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ 231 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence 5789999999999999999999999999999999999999986 59999999998877775443 34567777 6999
Q ss_pred EEEEeeCCCeEEEEecc
Q 006939 87 LLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 87 lL~sg~~Dg~V~vWdv~ 103 (625)
+|+++++.++|.+|-++
T Consensus 232 ~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLE 248 (391)
T ss_pred eEEEecCCCeEEEEEec
Confidence 99999999999999887
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.14 E-value=1.4e-05 Score=86.82 Aligned_cols=118 Identities=14% Similarity=0.202 Sum_probs=91.5
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEE-eCCCCCCeEEEEEcCCC-CEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~t-l~~h~~~V~sv~fsPdg-~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
.+|.+++.+|+|.+||......++. .+.|..+...|||+|.. .+|++-+.| .|.+||....+....+.. -.+...+
T Consensus 178 ~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstv 256 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTV 256 (673)
T ss_pred eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCccee
Confidence 5778999999999999987666655 47899999999999965 567788889 999999987665554432 2456667
Q ss_pred Ee-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCcccc
Q 006939 81 NV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSA 128 (625)
Q Consensus 81 ~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~ 128 (625)
+| ++|.+|+.|...|.|..||++.. ...+..+..|...+...
T Consensus 257 af~~~G~~L~aG~s~G~~i~YD~R~~------k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 257 AFSECGTYLCAGNSKGELIAYDMRST------KAPVAVRSAHDASVTRV 299 (673)
T ss_pred eecCCceEEEeecCCceEEEEecccC------CCCceEeeecccceeEE
Confidence 77 78999999999999999999943 24456666776665544
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.14 E-value=6.9e-06 Score=89.03 Aligned_cols=101 Identities=16% Similarity=0.240 Sum_probs=83.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCc-eeEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSR-LSDL 80 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~-v~~l 80 (625)
..++++|+..++|+|||++..-+++.+++|++.|.++.++-...+|++++.+ .|.|+.+.++.....+..+.+. +..+
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll 170 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL 170 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence 3578999999999999999777788899999999999999989999999988 8999999887776666544333 3344
Q ss_pred Ee--cCCCEEEEeeCCCeEEEEecc
Q 006939 81 NV--HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 81 ~~--~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+ ....+|.+++++|.|.+||+.
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred ecccccceeeEeeccCCeEEEEecc
Confidence 55 245567899999999999998
No 161
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.11 E-value=6.1e-06 Score=95.97 Aligned_cols=99 Identities=17% Similarity=0.306 Sum_probs=80.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEE-EeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccC-Ccee
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIG-SAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW-SRLS 78 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~-tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~-s~v~ 78 (625)
||.++++.|.|+++++|++++.+... +..+|...|..++|+|. .+++++.| ++++|+++.... ..+..|. ..+.
T Consensus 186 dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l-~~y~~h~g~~iw 262 (967)
T KOG0974|consen 186 DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQL-EVYDEHSGKGIW 262 (967)
T ss_pred CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccccee-hhhhhhhhccee
Confidence 79999999999999999999998876 77899999999999987 88999999 999998875333 3444443 2344
Q ss_pred EEEec-CCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNVH-EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~~-dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+..+ +.-.+++++.|+.+++||..
T Consensus 263 ~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 263 KIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEEEcCCceEEEeeccCcchhhhhhh
Confidence 55554 44567999999999999987
No 162
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.11 E-value=2.3e-05 Score=80.45 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=80.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeE---EEEeCCCCCCeEEEEEcCCCC-EEEEEeCC-cEEEEeCCCCee----------
Q 006939 2 SGYFHFSGSADRTVKFWDLETFEL---IGSAGPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPIRC---------- 66 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~---i~tl~~h~~~V~sv~fsPdg~-~LvSgs~D-sIrVWdl~sg~~---------- 66 (625)
|-+++.+.|-|.|-.|||++++.. ...+-.|...|+.|+|...+. .|++.+.| ++|+||++....
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~ 241 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP 241 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence 346889999999999999998733 455778999999999998664 56677777 999999864211
Q ss_pred --------------------------------------EEEEeccCCceeEEEe--cCCCEEEEeeCCCeEEEEecc
Q 006939 67 --------------------------------------HDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 67 --------------------------------------i~t~~~~~s~v~~l~~--~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+..+..|...|+.+++ +...+|.++++|..+.+||+.
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 0111456677888888 578899999999999999998
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.10 E-value=5.8e-05 Score=77.32 Aligned_cols=102 Identities=25% Similarity=0.459 Sum_probs=84.1
Q ss_pred CCC-EEEEEe-CCCeEEEEECCC-CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-C-cEEEEeCCCCeeEEEEeccCCc
Q 006939 2 SGY-FHFSGS-ADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGRTLLCGLH-E-SLKVFSWEPIRCHDAVDVGWSR 76 (625)
Q Consensus 2 dG~-lLASGS-~D~tVkIWDL~t-g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-D-sIrVWdl~sg~~i~t~~~~~s~ 76 (625)
++. +++..+ .|+.+.+||+.. +.....+..|...|..+.|+|++.++++++. + .+++|+...+..+..+..+...
T Consensus 121 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (466)
T COG2319 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200 (466)
T ss_pred CcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc
Confidence 344 444444 499999999998 8888999999999999999999998888875 7 9999999988888888777777
Q ss_pred eeEEEe-cCCC-EEEEeeCCCeEEEEecc
Q 006939 77 LSDLNV-HEGK-LLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 77 v~~l~~-~dg~-lL~sg~~Dg~V~vWdv~ 103 (625)
+..+.+ +++. ++++++.|+.|++||..
T Consensus 201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~ 229 (466)
T COG2319 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLS 229 (466)
T ss_pred eEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence 888887 5776 55555999999999765
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=2.1e-05 Score=83.21 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=84.2
Q ss_pred CCCEEEEEeCCCeEEEEECC------CCeEEEEeCCC-CCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEec-
Q 006939 2 SGYFHFSGSADRTVKFWDLE------TFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV- 72 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~------tg~~i~tl~~h-~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~- 72 (625)
+|++|++|+.|..+++|.++ +.+.|.....| .+.|+|+.|+...+.+++|+.+ ++...|+++.+.+.++..
T Consensus 67 N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~ 146 (609)
T KOG4227|consen 67 NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN 146 (609)
T ss_pred CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc
Confidence 68999999999999999974 34667666554 4899999999989999999988 999999999888876643
Q ss_pred -cCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 73 -GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 73 -~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+.|+.+.. +....+++...++.|.+||.+
T Consensus 147 ~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 147 NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred CcccceeecccCCCCceEEEEecCceEEEEecc
Confidence 2334566655 678889999999999999988
No 165
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.07 E-value=3.3e-05 Score=88.20 Aligned_cols=100 Identities=16% Similarity=0.333 Sum_probs=90.9
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-
Q 006939 5 FHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV- 82 (625)
Q Consensus 5 lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~- 82 (625)
-++.|+.+|.++||++++++.++++.++...|+++.-+|--..++.|..+ +|.++++..++.+..+...|++|..+.|
T Consensus 174 KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFr 253 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFR 253 (910)
T ss_pred eEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEec
Confidence 46789999999999999999999999999999999999988899999888 9999999999999999989999999999
Q ss_pred cCCC-EEEEeeCCCeEEEEeccC
Q 006939 83 HEGK-LLGCSYNQSCVGVWVVDI 104 (625)
Q Consensus 83 ~dg~-lL~sg~~Dg~V~vWdv~~ 104 (625)
.||. +|++|...|.+-+||++-
T Consensus 254 tDG~p~las~~~~G~m~~wDLe~ 276 (910)
T KOG1539|consen 254 TDGNPLLASGRSNGDMAFWDLEK 276 (910)
T ss_pred cCCCeeEEeccCCceEEEEEcCC
Confidence 4555 567777889999999993
No 166
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.04 E-value=1.6e-05 Score=87.12 Aligned_cols=93 Identities=18% Similarity=0.262 Sum_probs=79.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEeccCCccccc
Q 006939 33 TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPY 110 (625)
Q Consensus 33 ~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~ 110 (625)
.+.|...+|+|||.+|++-++| .+||||..+.+.+..+..-++.+.++.| +||+++++|+.|-.|.||.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~------- 362 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE------- 362 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec-------
Confidence 3578889999999999999999 9999999988877777666777777777 899999999999999999988
Q ss_pred cccceeEEeccCCCccccccCc
Q 006939 111 TIGSVTRVNGLSESKSSASGNL 132 (625)
Q Consensus 111 ~~~~i~~l~gHs~~v~~~~~~~ 132 (625)
+...+..-.||..|+....-++
T Consensus 363 erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEeccccccceeeEeecc
Confidence 4566778889999998766543
No 167
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.03 E-value=1.8e-05 Score=81.15 Aligned_cols=122 Identities=16% Similarity=0.241 Sum_probs=90.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEE-EEe-----CCCCCCeEEEEEcC--CCCEEEEEeCCcEEEEeCCCCeeEEEE-e
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELI-GSA-----GPETSGVRCLTFNP--DGRTLLCGLHESLKVFSWEPIRCHDAV-D 71 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i-~tl-----~~h~~~V~sv~fsP--dg~~LvSgs~DsIrVWdl~sg~~i~t~-~ 71 (625)
||+..||+-. |..|.+|++..+..+ ..+ .+|....++-+|+| ||..+++.++.++..||+++..+...+ .
T Consensus 133 Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 133 PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence 6777777654 888999999877653 111 12344566778988 678888877669999999988776544 4
Q ss_pred ccCCceeEEEe-cC-CCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 72 VGWSRLSDLNV-HE-GKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 72 ~~~s~v~~l~~-~d-g~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
.|...+.++.| ++ ..+|+++++||.|++||.+. ....+..+.+|+-|+-+.-
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~------tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK------TKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccC------CCccccccCCCceEEEEEE
Confidence 67777888888 44 44579999999999999983 2355778899998886544
No 168
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.02 E-value=1.6e-05 Score=89.15 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=81.8
Q ss_pred CCCCEEEEEeCCC-----eEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCe----eEEEE
Q 006939 1 MSGYFHFSGSADR-----TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR----CHDAV 70 (625)
Q Consensus 1 PdG~lLASGS~D~-----tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~----~i~t~ 70 (625)
|+|.++||++... -|++|+......+..+.+|.-.|..++|+|||++|++.+.| ++.+|...... .....
T Consensus 535 ~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~ 614 (764)
T KOG1063|consen 535 PTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACL 614 (764)
T ss_pred CCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccc
Confidence 6899999997544 47899998888888899999999999999999999999999 99999874211 11122
Q ss_pred eccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 71 DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 71 ~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..|...|-+..+ |++.++++++.|.+|++|-..
T Consensus 615 k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 615 KAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred cccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 334444444444 789999999999999999776
No 169
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=3.4e-05 Score=88.94 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=91.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
++..|++|+.+.+|..|.+..++.-..+.-.+-++++++|+-+|.+++.|++| .|+|-+.........+..+-.+|..+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 35689999999999999998887655555567889999999999999999999 89999999888888888888999999
Q ss_pred Ee-cCCCEEEEeeCCCeEEEEecc
Q 006939 81 NV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 81 ~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+ +++.+|+++.-||.|++||+.
T Consensus 145 ~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 145 SYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eEcCCCCEEEEEecCceEEEEEcc
Confidence 88 899999999999999999998
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.01 E-value=2.9e-05 Score=80.74 Aligned_cols=120 Identities=22% Similarity=0.272 Sum_probs=90.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC-----CCCeEEEEEcCCCCEEEEEeCCcEEEEeC-CCCeeEEEE----
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPE-----TSGVRCLTFNPDGRTLLCGLHESLKVFSW-EPIRCHDAV---- 70 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h-----~~~V~sv~fsPdg~~LvSgs~DsIrVWdl-~sg~~i~t~---- 70 (625)
|+-.++|+.+.|.-|++||.-+|++...+... -.+..+++|+|||..|++|...+|+|||. ++|+--...
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhh
Confidence 67789999999999999999999987776542 23568999999999999987779999999 777643222
Q ss_pred e---ccCCceeEEEe--cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccc
Q 006939 71 D---VGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSS 127 (625)
Q Consensus 71 ~---~~~s~v~~l~~--~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~ 127 (625)
. ...+.+..+++ .+.+.+++|+....+.||.-+ ....+..+.||...+.-
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-------~~~pl~llggh~gGvTh 255 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-------GRRPLQLLGGHGGGVTH 255 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecC-------CCCceeeecccCCCeee
Confidence 1 11344556666 477789999999999999777 34556666777766643
No 171
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.00 E-value=1.6e-05 Score=57.15 Aligned_cols=38 Identities=18% Similarity=0.444 Sum_probs=35.9
Q ss_pred CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEe
Q 006939 23 FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60 (625)
Q Consensus 23 g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWd 60 (625)
|+++.++.+|...|.+++|+|++.+|++|+.| .|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46889999999999999999999999999999 999997
No 172
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=6.5e-05 Score=84.28 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=88.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEE--EEeccCCcee
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD--AVDVGWSRLS 78 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~--t~~~~~s~v~ 78 (625)
+|..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+..++.|++| .+..++..+++... .+....+.+.
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 46678899999999999999999999999999999999999999999999888 78888888877642 3334447788
Q ss_pred EEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
++.| +++..++.|+.||.|++||+.
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcC
Confidence 8888 688889999999999999987
No 173
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.98 E-value=2e-05 Score=84.97 Aligned_cols=100 Identities=23% Similarity=0.321 Sum_probs=72.4
Q ss_pred CEEEEEeCCCeEEEEECCCCe----EEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCC----CCee-----EEE
Q 006939 4 YFHFSGSADRTVKFWDLETFE----LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE----PIRC-----HDA 69 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~----~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~----sg~~-----i~t 69 (625)
.+|||||.|+|++|||++.-. .+...-.|...|.+..|+|++-.|++.+.| .|+|||.. -... +..
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence 579999999999999987522 233445688999999999998779988888 99999973 1111 111
Q ss_pred EeccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 70 VDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 70 ~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+.|-......| ++..+++.|-.-..|.|||-.
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence 1233433333344 688889999888889998876
No 174
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.95 E-value=1.6e-05 Score=85.85 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=77.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 81 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~ 81 (625)
.-.+-+|...|+|.+|.....+.+..+-+|.++|.+|++.++|++.++.+.| .++|||++......++.. -.....+.
T Consensus 263 NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls 341 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLS 341 (545)
T ss_pred cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccc
Confidence 3456788999999999999999999999999999999999999999999999 999999998775555433 12334555
Q ss_pred ecCCCEEEEeeCCCeEEEEe
Q 006939 82 VHEGKLLGCSYNQSCVGVWV 101 (625)
Q Consensus 82 ~~dg~lL~sg~~Dg~V~vWd 101 (625)
+.+-.+|++|.. ..|.||-
T Consensus 342 ~SqkglLA~~~G-~~v~iw~ 360 (545)
T KOG1272|consen 342 LSQKGLLALSYG-DHVQIWK 360 (545)
T ss_pred cccccceeeecC-Ceeeeeh
Confidence 556666766655 4799993
No 175
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.94 E-value=8e-06 Score=88.04 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=91.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|...+|++++..|.++.-|+.+|+++..+..-.+.+..++.+|-+-.+-.|..+ +|-+|.....+.+-.+-+|.+.|.+
T Consensus 219 PyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~s 298 (545)
T KOG1272|consen 219 PYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSS 298 (545)
T ss_pred chhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcce
Confidence 456789999999999999999999998887777888999999988887788777 9999999888777666678899999
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+++ ++|+++++++.|..|+|||++
T Consensus 299 iAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 299 IAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred EEECCCCcEEeecccccceeEeeec
Confidence 999 799999999999999999998
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=97.93 E-value=9.1e-06 Score=82.41 Aligned_cols=61 Identities=13% Similarity=0.320 Sum_probs=58.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 61 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl 61 (625)
||+++|||++.|+.+|+|..++...+..++-|.++|.+++|+|+..+++.++.| .|-+|++
T Consensus 261 pD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 261 PDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 799999999999999999999999999999999999999999999999999999 9999986
No 177
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.88 E-value=0.00014 Score=79.27 Aligned_cols=98 Identities=17% Similarity=0.263 Sum_probs=77.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSD 79 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~ 79 (625)
|+..+|+|++.|++|+||+ ..+++.+.. -..++.|+.|+|.| .++.|... ...|.|.++...+.. +....++..
T Consensus 378 ps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~-~~d~~~ls~ 452 (626)
T KOG2106|consen 378 PSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI-HTDNEQLSV 452 (626)
T ss_pred CChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE-EecCCceEE
Confidence 5667899999999999999 445444432 23678999999999 77777766 888999988544433 334778888
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.+ ++|.+|+.|+.|+.|++|-++
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEEC
Confidence 888 899999999999999999887
No 178
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=3.5e-05 Score=85.35 Aligned_cols=44 Identities=32% Similarity=0.493 Sum_probs=35.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 45 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg 45 (625)
|.|.+||+|+.||+|+||.+.||.|++++.- .+.|.||+|+|.+
T Consensus 410 p~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~ 453 (733)
T KOG0650|consen 410 PSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLS 453 (733)
T ss_pred CCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCC
Confidence 5699999999999999999999999887652 2456677776654
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.85 E-value=0.00018 Score=72.42 Aligned_cols=95 Identities=17% Similarity=0.279 Sum_probs=69.3
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeCCCC---------CC-eEEEEEcCCCCEEEEEeCCcEEEEeCCCCeeEEEEeccC
Q 006939 5 FHFSGSADRTVKFWDLETFELIGSAGPET---------SG-VRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGW 74 (625)
Q Consensus 5 lLASGS~D~tVkIWDL~tg~~i~tl~~h~---------~~-V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~i~t~~~~~ 74 (625)
.++||+.||++|+||+++++++..++... +. |-+++. +..|+++|+.-.+.+|.++..+|..++...
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpip- 246 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPIP- 246 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEecc-
Confidence 46799999999999999999988765432 21 344544 566888876559999999999988887654
Q ss_pred CceeEEEecCCCEEEEeeCCCeEEEEecc
Q 006939 75 SRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 75 s~v~~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+..+.|.+. .++.++..++|.-|.+.
T Consensus 247 a~v~~v~F~~d-~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 247 ARVHLVDFVDD-CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred cceeEeeeecc-eEEEeccccceeeeeec
Confidence 23455555444 45566666799999877
No 180
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=97.84 E-value=8.5e-05 Score=77.74 Aligned_cols=62 Identities=8% Similarity=0.114 Sum_probs=53.4
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcC--CCCEEEEEeCC-cEEEEeCCCCe
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP--DGRTLLCGLHE-SLKVFSWEPIR 65 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsP--dg~~LvSgs~D-sIrVWdl~sg~ 65 (625)
..+|++...++|+|||..+++.+..+++|...+..++|.. .+..+.+|+.| +||+||++...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~ 105 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA 105 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch
Confidence 4688899999999999999999999999988888888877 35677888888 99999997643
No 181
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.00014 Score=81.63 Aligned_cols=103 Identities=12% Similarity=0.141 Sum_probs=79.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEE--EeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccC---
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIG--SAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW--- 74 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~--tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~--- 74 (625)
|.+..++.|+.||.+.+++...++... .+.-.++.|.++.|+|++..+++|+.| .|++||...+........+.
T Consensus 120 p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l 199 (691)
T KOG2048|consen 120 PENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL 199 (691)
T ss_pred CccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence 456788999999988888888777643 356667999999999999999999999 79999998876554322111
Q ss_pred -----CceeEEEecCCCEEEEeeCCCeEEEEecc
Q 006939 75 -----SRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 75 -----s~v~~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+..+.+-....|++|..-|+|++||..
T Consensus 200 ~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 200 SKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSI 233 (691)
T ss_pred ccCCceEEEEEEEeecCcEEEecCCceEEEEccc
Confidence 11334444456789999999999999988
No 182
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=1.7e-05 Score=93.14 Aligned_cols=101 Identities=16% Similarity=0.220 Sum_probs=75.0
Q ss_pred EEEEEeCCCeEEEEECCCC------eEEEEeCCCCCCeEEEEEcCCCC-EEEEEeCC-cEEEEeCCCCeeEEEE-e-ccC
Q 006939 5 FHFSGSADRTVKFWDLETF------ELIGSAGPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPIRCHDAV-D-VGW 74 (625)
Q Consensus 5 lLASGS~D~tVkIWDL~tg------~~i~tl~~h~~~V~sv~fsPdg~-~LvSgs~D-sIrVWdl~sg~~i~t~-~-~~~ 74 (625)
+||.|..||.|-+||.... ..+.++..|++.|+.+.|++... ++++|+.| .|.|||++.-..-.+. . ...
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~ 161 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP 161 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence 6899999999999997652 34677889999999999999755 88999988 9999999753221111 0 012
Q ss_pred CceeEEEe--cCCCEEEEeeCCCeEEEEeccCC
Q 006939 75 SRLSDLNV--HEGKLLGCSYNQSCVGVWVVDIS 105 (625)
Q Consensus 75 s~v~~l~~--~dg~lL~sg~~Dg~V~vWdv~~~ 105 (625)
..|..+.| .....|++++.+|.+.|||++.+
T Consensus 162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred ccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 33455555 24456788899999999999943
No 183
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=4.5e-05 Score=89.73 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=86.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC--CeEEEEEcCCCC-EEEEEeCC----cEEEEeCCCC-eeEEEEeccC
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETS--GVRCLTFNPDGR-TLLCGLHE----SLKVFSWEPI-RCHDAVDVGW 74 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~--~V~sv~fsPdg~-~LvSgs~D----sIrVWdl~sg-~~i~t~~~~~ 74 (625)
..+||+|+.++.+.|||++..+.+..+..|.. .+..+.|||++- .++.++.| .|.+||++.. ...+++.+|.
T Consensus 174 qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~ 253 (1049)
T KOG0307|consen 174 SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ 253 (1049)
T ss_pred hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccc
Confidence 45789999999999999999888777766544 478999999864 34455443 5999998753 3445566677
Q ss_pred CceeEEEe--cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccc
Q 006939 75 SRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSS 127 (625)
Q Consensus 75 s~v~~l~~--~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~ 127 (625)
..+..+.+ .|..+|++++.|+.|..|+.+ ++..+..+..-..|...
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~-------tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPN-------TGEVLGELPAQGNWCFD 301 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCC-------CceEeeecCCCCcceee
Confidence 77777777 366899999999999999988 34444444444444433
No 184
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.68 E-value=0.00045 Score=71.91 Aligned_cols=62 Identities=21% Similarity=0.413 Sum_probs=54.2
Q ss_pred CCCEEEEEeCCCeE-EEEECCCCeEEEEeC--CCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC
Q 006939 2 SGYFHFSGSADRTV-KFWDLETFELIGSAG--PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 63 (625)
Q Consensus 2 dG~lLASGS~D~tV-kIWDL~tg~~i~tl~--~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s 63 (625)
+|.++||+|..||+ ||||.++|+.+..+. .....|+|++|+|++.||+..++. +|+||.++.
T Consensus 192 ~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 192 QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 79999999999985 899999999988763 234679999999999999998887 999999875
No 185
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.66 E-value=0.00019 Score=80.82 Aligned_cols=103 Identities=15% Similarity=0.236 Sum_probs=78.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeE----EEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCC--eeEEEEe--
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFEL----IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI--RCHDAVD-- 71 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~----i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg--~~i~t~~-- 71 (625)
|||++|++.|.|+++.+|....... ....+.|+.-|.+..|+|++.+|++++.| +++||..... .++..+.
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~ 661 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL 661 (764)
T ss_pred CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh
Confidence 7999999999999999998743322 23468899999999999999999999999 9999998876 4433211
Q ss_pred ccCCceeEEEe----c--CCCEEEEeeCCCeEEEEecc
Q 006939 72 VGWSRLSDLNV----H--EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 72 ~~~s~v~~l~~----~--dg~lL~sg~~Dg~V~vWdv~ 103 (625)
-....+..+.+ + .+.+++.|...|.|.+|...
T Consensus 662 ~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 662 KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 12233444443 1 34478999999999999765
No 186
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00064 Score=75.54 Aligned_cols=117 Identities=12% Similarity=0.038 Sum_probs=102.5
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEe--CCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSA--GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl--~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
-.++-|-.-|.|.+|++..|+.-..+ .+|.+.|.++.++.+-.+|.|++.| .+..|+...+..++.+......+..+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence 35677888899999999999987665 5799999999999998999999999 99999999999999888888888888
Q ss_pred Ee-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCccccc
Q 006939 81 NV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 81 ~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
.+ ++++.|++++. .|++||+. +...+.++.||...++...
T Consensus 151 ~is~D~~~l~~as~--~ik~~~~~-------~kevv~~ftgh~s~v~t~~ 191 (541)
T KOG4547|consen 151 CISPDGKILLTASR--QIKVLDIE-------TKEVVITFTGHGSPVRTLS 191 (541)
T ss_pred EEcCCCCEEEeccc--eEEEEEcc-------CceEEEEecCCCcceEEEE
Confidence 87 89999999887 79999998 6778899999999888754
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.62 E-value=0.00031 Score=78.72 Aligned_cols=101 Identities=14% Similarity=0.220 Sum_probs=76.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC--------CeeEEEE-
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP--------IRCHDAV- 70 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s--------g~~i~t~- 70 (625)
|||..|+.+..| .+.+||...|.++.++++|.+.|+|++|+.||..++||+.| .+.+|+-.- +-.++.+
T Consensus 22 PDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMs 100 (1081)
T KOG1538|consen 22 PDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMS 100 (1081)
T ss_pred CCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEee
Confidence 788888777655 58999999999999999999999999999999999999999 899998531 1011111
Q ss_pred ---------------eccC-------------CceeEEEe-cCCCEEEEeeCCCeEEEEec
Q 006939 71 ---------------DVGW-------------SRLSDLNV-HEGKLLGCSYNQSCVGVWVV 102 (625)
Q Consensus 71 ---------------~~~~-------------s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv 102 (625)
-+-| ..+....+ .||++++.|..+|+|.+-+-
T Consensus 101 FNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 101 FNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred cCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 0112 12334444 68999999999999877643
No 188
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.62 E-value=0.00048 Score=71.70 Aligned_cols=95 Identities=14% Similarity=0.226 Sum_probs=79.4
Q ss_pred EeCCCeEEEEECCCCeE--EEEeCCCCCCeEEEEEcCCCCEEEEEeCC--cEEEEeCCCCeeEEEEecc--CCceeEEEe
Q 006939 9 GSADRTVKFWDLETFEL--IGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVG--WSRLSDLNV 82 (625)
Q Consensus 9 GS~D~tVkIWDL~tg~~--i~tl~~h~~~V~sv~fsPdg~~LvSgs~D--sIrVWdl~sg~~i~t~~~~--~s~v~~l~~ 82 (625)
|-.-|.|.|-||..-+. -..+..|.+.|.|++++-+|..+++++.. -|||||.++|..+.-+.-+ ...++++.|
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 44567888888875544 35678899999999999999999999986 5999999999988766533 456788888
Q ss_pred -cCCCEEEEeeCCCeEEEEecc
Q 006939 83 -HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 83 -~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
++..+|+++++-|+|.||.+.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEee
Confidence 899999999999999999887
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.56 E-value=0.001 Score=70.50 Aligned_cols=100 Identities=16% Similarity=0.257 Sum_probs=80.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeC---CCCCCeEEEEEcCCCCEEEE-EeCC--cEEEEeCCCCeeEEEEeccCCc
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAG---PETSGVRCLTFNPDGRTLLC-GLHE--SLKVFSWEPIRCHDAVDVGWSR 76 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~---~h~~~V~sv~fsPdg~~LvS-gs~D--sIrVWdl~sg~~i~t~~~~~s~ 76 (625)
-+.|+..-.+. |.|||+.+.++++++. .+..++.++.+++.+.+++- ++.+ .|.|||..+-+.+..+..|-+.
T Consensus 97 r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~ 175 (391)
T KOG2110|consen 97 RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP 175 (391)
T ss_pred cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc
Confidence 45566655554 9999999999988874 45566778888877778774 3333 7999999999999999999999
Q ss_pred eeEEEe-cCCCEEEEeeCCCe-EEEEecc
Q 006939 77 LSDLNV-HEGKLLGCSYNQSC-VGVWVVD 103 (625)
Q Consensus 77 v~~l~~-~dg~lL~sg~~Dg~-V~vWdv~ 103 (625)
+.+++| ++|.+|++++..|+ |+||.+.
T Consensus 176 lAalafs~~G~llATASeKGTVIRVf~v~ 204 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASEKGTVIRVFSVP 204 (391)
T ss_pred eeEEEECCCCCEEEEeccCceEEEEEEcC
Confidence 999999 79999999999885 6888876
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=97.55 E-value=3.3e-05 Score=88.16 Aligned_cols=95 Identities=20% Similarity=0.395 Sum_probs=83.7
Q ss_pred EeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEec-CCCEEEEeeCCCeEEEEeccCC
Q 006939 28 SAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVH-EGKLLGCSYNQSCVGVWVVDIS 105 (625)
Q Consensus 28 tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~~-dg~lL~sg~~Dg~V~vWdv~~~ 105 (625)
.+.+|...|+|+.|...|+++++|++| .++||..+++.|...+.+|.+.+.+++.+ +..++++++.|..|++|.+.
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~-- 262 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP-- 262 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC--
Confidence 456899999999999999999999999 89999999999999999999999999984 66677999999999999887
Q ss_pred ccccccccceeEEeccCCCccccc
Q 006939 106 RIEPYTIGSVTRVNGLSESKSSAS 129 (625)
Q Consensus 106 ~~~~~~~~~i~~l~gHs~~v~~~~ 129 (625)
.+..+.-+.||++.+.++.
T Consensus 263 -----~~~pvsvLrghtgavtaia 281 (1113)
T KOG0644|consen 263 -----DGAPVSVLRGHTGAVTAIA 281 (1113)
T ss_pred -----CCchHHHHhccccceeeec
Confidence 5677778889988776654
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.00019 Score=78.98 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=67.6
Q ss_pred EEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEE-eccCCceeEEEe-c--CCCEEEEeeCCCeEEEEe
Q 006939 27 GSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-DVGWSRLSDLNV-H--EGKLLGCSYNQSCVGVWV 101 (625)
Q Consensus 27 ~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~-~~~~s~v~~l~~-~--dg~lL~sg~~Dg~V~vWd 101 (625)
..+.||++-|.|+.|+.+|.+|++|++| .+.|||.-..+....+ .+|...|.+..| | ++.++++|..|..|++||
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 3578999999999999999999999999 8999998766655544 467788888887 3 778899999999999999
Q ss_pred ccCCc
Q 006939 102 VDISR 106 (625)
Q Consensus 102 v~~~~ 106 (625)
++-..
T Consensus 124 l~~~~ 128 (758)
T KOG1310|consen 124 LDSSK 128 (758)
T ss_pred ccccc
Confidence 98433
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.54 E-value=0.0011 Score=79.07 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=74.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-------CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC--C-----e
Q 006939 1 MSGYFHFSGSADRTVKFWDLET-------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP--I-----R 65 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~t-------g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s--g-----~ 65 (625)
+++.+|+|||.||+||+||+.. ..+..++....+.+.++.+-+.|..++.++.| .|++.+++- + .
T Consensus 1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~ 1138 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVAT 1138 (1431)
T ss_pred CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceee
Confidence 3568999999999999999853 22344555567889999999999999988888 899888753 1 0
Q ss_pred eEE---------------------E---E------------------------eccCCceeEEEe-cCCCEEEEeeCCCe
Q 006939 66 CHD---------------------A---V------------------------DVGWSRLSDLNV-HEGKLLGCSYNQSC 96 (625)
Q Consensus 66 ~i~---------------------t---~------------------------~~~~s~v~~l~~-~dg~lL~sg~~Dg~ 96 (625)
+.. . + ...-+.+..+.+ +.+.+++.|...|.
T Consensus 1139 ~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1139 QVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred eeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCce
Confidence 000 0 0 111233555555 56788999999999
Q ss_pred EEEEeccCC
Q 006939 97 VGVWVVDIS 105 (625)
Q Consensus 97 V~vWdv~~~ 105 (625)
+.+||+++.
T Consensus 1219 l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1219 LVLWDLRFR 1227 (1431)
T ss_pred EEEEEeecC
Confidence 999999844
No 193
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.00061 Score=73.84 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=77.0
Q ss_pred CCCCEEEEEeCCCeEEEEECC--CCeEEEEeCCCCCCeEEEEEcCCCC-EEEEEeCC-cEEEEeCCCCeeEE--------
Q 006939 1 MSGYFHFSGSADRTVKFWDLE--TFELIGSAGPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPIRCHD-------- 68 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~--tg~~i~tl~~h~~~V~sv~fsPdg~-~LvSgs~D-sIrVWdl~sg~~i~-------- 68 (625)
|.-.+|++|+.|++++||-+. +...+..+.-...+|.+.+|.|+|. .+++++.. .+..||+++++...
T Consensus 223 p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 223 PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE 302 (514)
T ss_pred CCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcc
Confidence 567899999999999999775 3445677766678999999999998 78888887 89999997643210
Q ss_pred -----EE-----------ecc--------------------CCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 69 -----AV-----------DVG--------------------WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 69 -----t~-----------~~~--------------------~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.| .++ -+.+.++.| .+++.|+.++.+|.|.+||++
T Consensus 303 ~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~ 374 (514)
T KOG2055|consen 303 EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR 374 (514)
T ss_pred cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecC
Confidence 00 000 123556666 678888888888999999998
No 194
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.47 E-value=0.0006 Score=79.90 Aligned_cols=104 Identities=12% Similarity=0.067 Sum_probs=83.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEE-EEeccCCceeE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD-AVDVGWSRLSD 79 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~-t~~~~~s~v~~ 79 (625)
+.-++++|+.-+.|.+|+..--+.-..+.+|.+.++++.|+.||+++++.++| ++++|++++.+... +.-.|...+.+
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 45678999999999999987322223588999999999999999999999999 99999999887765 33456666777
Q ss_pred EEecCCCEEEEeeCCCeEEEEeccCCc
Q 006939 80 LNVHEGKLLGCSYNQSCVGVWVVDISR 106 (625)
Q Consensus 80 l~~~dg~lL~sg~~Dg~V~vWdv~~~~ 106 (625)
+.+.+. .+++++.|-+.++|+.+...
T Consensus 224 ~~~~~n-~i~t~gedctcrvW~~~~~~ 249 (967)
T KOG0974|consen 224 CCFLPN-RIITVGEDCTCRVWGVNGTQ 249 (967)
T ss_pred EEeccc-eeEEeccceEEEEEecccce
Confidence 776444 89999999999999777333
No 195
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.00033 Score=72.82 Aligned_cols=68 Identities=16% Similarity=0.320 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 36 VRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 36 V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..|+.|++.|.+|+.|+.| .|-+||+.+...-+++..|-.++.++++ ++|+.|++++.|..|.+||+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence 6899999999999999998 9999999998887888889899999998 799999999999999999997
No 196
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.46 E-value=0.00069 Score=67.11 Aligned_cols=64 Identities=23% Similarity=0.417 Sum_probs=51.4
Q ss_pred CCCCEEEEEeCC---CeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC------C-cEEEEeCCCCeeE
Q 006939 1 MSGYFHFSGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH------E-SLKVFSWEPIRCH 67 (625)
Q Consensus 1 PdG~lLASGS~D---~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~------D-sIrVWdl~sg~~i 67 (625)
|+|++|+.|+.+ |.|.|||+++.+.+...+. ..+..+.|+|||++|+++.. | .++||++. |+.+
T Consensus 110 P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 110 PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEe
Confidence 899999998754 5699999999998877653 45789999999999998753 5 68899885 4443
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.41 E-value=0.00062 Score=74.88 Aligned_cols=102 Identities=10% Similarity=0.168 Sum_probs=72.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
|||.-|+|++.||.|+||. ++|-+..++-.....|+|++|.|+..-++-|..+.+.+-.+....-+-.+..|-+.+..+
T Consensus 114 ~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~ 192 (737)
T KOG1524|consen 114 PDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSL 192 (737)
T ss_pred CCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEe
Confidence 6899999999999999996 557666667777789999999998765544433433333343332233334444455555
Q ss_pred Ee-cCCCEEEEeeCCCeEEEEecc
Q 006939 81 NV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 81 ~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+ +...++++|+.|-..+|||-.
T Consensus 193 ~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 193 SWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred ecCccccceeecCCceeEEeeccc
Confidence 55 567789999999999999976
No 198
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.41 E-value=0.0005 Score=74.38 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=72.0
Q ss_pred EEEEeCCCeEEEEECCCCeE-EEEeCCCCCCeEEEEEcCCCCE-EEEEeCC-cEEEEeCCCCe--e--EEEEeccCCcee
Q 006939 6 HFSGSADRTVKFWDLETFEL-IGSAGPETSGVRCLTFNPDGRT-LLCGLHE-SLKVFSWEPIR--C--HDAVDVGWSRLS 78 (625)
Q Consensus 6 LASGS~D~tVkIWDL~tg~~-i~tl~~h~~~V~sv~fsPdg~~-LvSgs~D-sIrVWdl~sg~--~--i~t~~~~~s~v~ 78 (625)
++.|..-|...+||++++.. ...+.-|...|..++++|...+ +++|+.| +.+|||++.-. . +-..-.|...|.
T Consensus 294 vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~ 373 (498)
T KOG4328|consen 294 VLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVN 373 (498)
T ss_pred EEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceee
Confidence 34444445889999998765 5566778889999999997665 6688888 99999997522 1 111123555566
Q ss_pred EEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
...| |.+..|+|.+.|..|+|||..
T Consensus 374 sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 374 SAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eeEEcCCCCceEeeccCCceEEeecc
Confidence 7777 666669999999999999985
No 199
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.41 E-value=0.00037 Score=74.41 Aligned_cols=94 Identities=9% Similarity=0.118 Sum_probs=73.7
Q ss_pred EeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEec-cCCceeEEEecCCC
Q 006939 9 GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV-GWSRLSDLNVHEGK 86 (625)
Q Consensus 9 GS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~-~~s~v~~l~~~dg~ 86 (625)
++.+..+.+|....+.+ ..+-||-+.+..|+|+||+.+++++..| .|||-.+..-..++.+.. |...|..+...+++
T Consensus 128 agD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~ 206 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY 206 (390)
T ss_pred cCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc
Confidence 34455556666554333 3456788999999999999999999999 999866655555666654 77788888888889
Q ss_pred EEEEeeCCCeEEEEecc
Q 006939 87 LLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 87 lL~sg~~Dg~V~vWdv~ 103 (625)
+|++|+.|++|++||+.
T Consensus 207 ~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDIT 223 (390)
T ss_pred eeeecCCCCcEEEEecc
Confidence 99999999999999998
No 200
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0015 Score=69.75 Aligned_cols=101 Identities=10% Similarity=0.100 Sum_probs=85.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCe-EEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEE-EeccCCceeE
Q 006939 3 GYFHFSGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA-VDVGWSRLSD 79 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~-~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t-~~~~~s~v~~ 79 (625)
.+.||++..-+.|++||...+. .+.++.-...++.++...|+|+++++|..- .+..||++.++.+.. +..-.+.+..
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS 295 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence 5789999999999999998654 466676667899999999999999998876 899999999888755 5555566778
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
++. +.+.+|++++-|..|+|+|+.
T Consensus 296 ih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred EEEcCCCceEEeeccceeEEEeecc
Confidence 887 466899999999999999998
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.002 Score=68.26 Aligned_cols=101 Identities=16% Similarity=0.265 Sum_probs=70.7
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCC-CCeeEEEEeccCCce
Q 006939 1 MSGYFHFSGS-ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE-PIRCHDAVDVGWSRL 77 (625)
Q Consensus 1 PdG~lLASGS-~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~-sg~~i~t~~~~~s~v 77 (625)
+||..+++++ .|..|.|||..++.++.....-.+++.-+.|+|||.+|+.+.-| ..+||+.. +..+.... .+.+.|
T Consensus 205 ~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrv 283 (445)
T KOG2139|consen 205 EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRV 283 (445)
T ss_pred CCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCce
Confidence 5888999988 46789999999998876654445788999999999999999999 99999654 33333322 233355
Q ss_pred eEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 78 SDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 78 ~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
....+ ++|.+|+-++. +.-.+|.+.
T Consensus 284 qtacWspcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 284 QTACWSPCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred eeeeecCCCCEEEEEEc-CCceEEEEe
Confidence 55555 67777654444 233455444
No 202
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.27 E-value=0.004 Score=65.96 Aligned_cols=102 Identities=20% Similarity=0.270 Sum_probs=69.0
Q ss_pred CCCCEEEEEeC-CCeEEEEECCC--Ce--EEEEeCCC------CCCeEEEEEcCCCCEEEEEeC-C-cEEEEeCCCCe--
Q 006939 1 MSGYFHFSGSA-DRTVKFWDLET--FE--LIGSAGPE------TSGVRCLTFNPDGRTLLCGLH-E-SLKVFSWEPIR-- 65 (625)
Q Consensus 1 PdG~lLASGS~-D~tVkIWDL~t--g~--~i~tl~~h------~~~V~sv~fsPdg~~LvSgs~-D-sIrVWdl~sg~-- 65 (625)
|||++|+++.. +++|.+||+.. ++ .+..+..+ ......+.|+|+|++++++.. + .|.+|++....
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 68999988876 89999999973 33 34443321 112336889999999988765 3 89999986432
Q ss_pred --eEEEEeccCCceeEEEe-cCCCEEEEeeC-CCeEEEEecc
Q 006939 66 --CHDAVDVGWSRLSDLNV-HEGKLLGCSYN-QSCVGVWVVD 103 (625)
Q Consensus 66 --~i~t~~~~~s~v~~l~~-~dg~lL~sg~~-Dg~V~vWdv~ 103 (625)
.+.....++ ....+.+ ++|++|+++.. ++.|.+|+++
T Consensus 264 ~~~~~~~~~~~-~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 264 LSFEGHQPTET-QPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeEEEeccc-cCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 233333332 2335566 78998877664 8899999886
No 203
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.0018 Score=72.02 Aligned_cols=99 Identities=23% Similarity=0.243 Sum_probs=85.1
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCCCeeEEEEeccCCceeEEEe-
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV- 82 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~i~t~~~~~s~v~~l~~- 82 (625)
..|.|++.|+.+-.|+...+..++.+.+....+.+++.+|||..+++|+ ..|++||+++++.+.+|.+|.+.+..+.|
T Consensus 115 ~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 115 GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence 4578999999999999999999999999999999999999999998875 47999999999999999999999999988
Q ss_pred cC-----CCEE-EEeeCCCeEEEEecc
Q 006939 83 HE-----GKLL-GCSYNQSCVGVWVVD 103 (625)
Q Consensus 83 ~d-----g~lL-~sg~~Dg~V~vWdv~ 103 (625)
.. |.++ .+...+..+.+|-++
T Consensus 194 ~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 194 TLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EeccccccceeeeccccccceeEEEEE
Confidence 23 4554 444556678888776
No 204
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.24 E-value=0.0049 Score=67.17 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=75.2
Q ss_pred CEE-EEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEE
Q 006939 4 YFH-FSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 81 (625)
Q Consensus 4 ~lL-ASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~ 81 (625)
.++ ++-..++.|.+.|..+.+.+..+......-..+.|+|||++++.++.| .|.++|+.+.+.+..+..+... ..+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~-~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP-RGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc-ceEE
Confidence 344 456678999999999999999987654433457899999999988888 9999999999999988887664 4455
Q ss_pred e-cCCCEEEEe-eCCCeEEEEecc
Q 006939 82 V-HEGKLLGCS-YNQSCVGVWVVD 103 (625)
Q Consensus 82 ~-~dg~lL~sg-~~Dg~V~vWdv~ 103 (625)
+ ++|++++++ ..++.+.++|..
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETT
T ss_pred EcCCCCEEEEEecCCCceeEeccc
Confidence 5 799988655 678999999977
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.22 E-value=0.0029 Score=70.04 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=66.7
Q ss_pred CCCCEEEEEeCC---CeEEEEECCCCeE--EEEeCCCCCCeEEEEEcCCCCEEEEEe-CC-c--EEEEeCCCCeeEEEEe
Q 006939 1 MSGYFHFSGSAD---RTVKFWDLETFEL--IGSAGPETSGVRCLTFNPDGRTLLCGL-HE-S--LKVFSWEPIRCHDAVD 71 (625)
Q Consensus 1 PdG~lLASGS~D---~tVkIWDL~tg~~--i~tl~~h~~~V~sv~fsPdg~~LvSgs-~D-s--IrVWdl~sg~~i~t~~ 71 (625)
|||+.|+.++.+ ..|.+||+.+++. +..+.+| ..+++|+|||+.|+.+. .+ . |.+||+.++.... +.
T Consensus 213 PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt 288 (429)
T PRK01742 213 PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LT 288 (429)
T ss_pred CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe-ec
Confidence 799999887754 3699999998763 4444544 34689999999887654 34 4 4455666665433 33
Q ss_pred ccCCceeEEEe-cCCCEEEE-eeCCCeEEEEecc
Q 006939 72 VGWSRLSDLNV-HEGKLLGC-SYNQSCVGVWVVD 103 (625)
Q Consensus 72 ~~~s~v~~l~~-~dg~lL~s-g~~Dg~V~vWdv~ 103 (625)
.+...+....| ++|+.|+. +..++...+|+++
T Consensus 289 ~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 289 SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 34444455566 78887654 4467889999876
No 206
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.19 E-value=0.00097 Score=75.87 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=72.2
Q ss_pred CEEEEEeCCCeEEEEECC-CCeEEEEeCCCCCCeEEEEEcCCCCEEEE-EeCC-cEEEEeCCCCe--eEEEEeccCCcee
Q 006939 4 YFHFSGSADRTVKFWDLE-TFELIGSAGPETSGVRCLTFNPDGRTLLC-GLHE-SLKVFSWEPIR--CHDAVDVGWSRLS 78 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~-tg~~i~tl~~h~~~V~sv~fsPdg~~LvS-gs~D-sIrVWdl~sg~--~i~t~~~~~s~v~ 78 (625)
.+|++++ |.+|+||.-. .-..+..+..+...|.+++|+|....++. +..| .|.+||+.... .......+.....
T Consensus 412 k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~ 490 (555)
T KOG1587|consen 412 KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALT 490 (555)
T ss_pred ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccc
Confidence 3556666 9999999877 55667777888888999999998766554 4445 89999996432 2233333333334
Q ss_pred EEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+.+ +.|++|++|...|.+.+|++.
T Consensus 491 ~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 491 RVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred eeecCCCCcEEEEecCCCcEEEEEcC
Confidence 4445 569999999999999999986
No 207
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.13 E-value=0.0054 Score=64.96 Aligned_cols=101 Identities=22% Similarity=0.287 Sum_probs=68.4
Q ss_pred CCCCEEEEEe-CCCeEEEEECCC-C---eEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-C-cEEEEeCCCC-eeEE----
Q 006939 1 MSGYFHFSGS-ADRTVKFWDLET-F---ELIGSAGPETSGVRCLTFNPDGRTLLCGLH-E-SLKVFSWEPI-RCHD---- 68 (625)
Q Consensus 1 PdG~lLASGS-~D~tVkIWDL~t-g---~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-D-sIrVWdl~sg-~~i~---- 68 (625)
|+|++|++++ .++.|.+||+.+ + +.+..+. +.....+++|+|+|++++.+.. + .|.+||+.+. .+..
T Consensus 89 ~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 89 HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 6888888776 488999999964 2 2233332 2345788899999998875554 3 8999999763 2211
Q ss_pred --EEeccCCceeEEEe-cCCCEEEEeeC-CCeEEEEecc
Q 006939 69 --AVDVGWSRLSDLNV-HEGKLLGCSYN-QSCVGVWVVD 103 (625)
Q Consensus 69 --t~~~~~s~v~~l~~-~dg~lL~sg~~-Dg~V~vWdv~ 103 (625)
....+ .....+.| ++++++.++.. ++.|.+|+++
T Consensus 168 ~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 168 EVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred ceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 11122 23455666 78888866654 8999999987
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.0035 Score=66.47 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=75.8
Q ss_pred CCEEEEEeCCCeEEEEECCC----CeE----------EEEeCCCCCCeEEEEEcCCCCEEEEEeCC--cEEEEeCCCCee
Q 006939 3 GYFHFSGSADRTVKFWDLET----FEL----------IGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRC 66 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~t----g~~----------i~tl~~h~~~V~sv~fsPdg~~LvSgs~D--sIrVWdl~sg~~ 66 (625)
+.-|+.|+.-| |.||.... +.. +....+| ..|.++.|++||..+++++.+ .|.|||..++.+
T Consensus 153 aselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 153 ASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred cceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc
Confidence 34567777665 89997532 111 2233555 789999999999999999876 799999999998
Q ss_pred EEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 67 HDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 67 i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.....+.+.+.-+.+ |++.+|+++.-|+..++|+..
T Consensus 231 ~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 231 IPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred ccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence 7766555556667777 899999999999999999544
No 209
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.10 E-value=0.001 Score=68.68 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=69.8
Q ss_pred CEEEEEeCCCeEEEEECC-CCeEEEE-eCCCCCCeEEEEEcC-CCCEEEEEeCC-cEEEEeCC-CCeeEEEEeccCCcee
Q 006939 4 YFHFSGSADRTVKFWDLE-TFELIGS-AGPETSGVRCLTFNP-DGRTLLCGLHE-SLKVFSWE-PIRCHDAVDVGWSRLS 78 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~-tg~~i~t-l~~h~~~V~sv~fsP-dg~~LvSgs~D-sIrVWdl~-sg~~i~t~~~~~s~v~ 78 (625)
.++.+||.|+.+..||++ .++++.. .+.|+.+|.+|.-+| .+.++++|+.| .|++||.+ .++.+..-.++ +.|.
T Consensus 179 nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-GGVW 257 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-GGVW 257 (339)
T ss_pred ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-cceE
Confidence 688999999999999999 4566655 678999999998776 57899999999 99999998 45555433322 3344
Q ss_pred EEEe---cCCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNV---HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~---~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+.. ..+++|+++-+.| .+|-+..
T Consensus 258 Ri~~~p~~~~~lL~~CMh~G-~ki~~~~ 284 (339)
T KOG0280|consen 258 RIKHHPEIFHRLLAACMHNG-AKILDSS 284 (339)
T ss_pred EEEecchhhhHHHHHHHhcC-ceEEEec
Confidence 4443 2345565555544 4555554
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.0039 Score=73.52 Aligned_cols=101 Identities=16% Similarity=0.305 Sum_probs=78.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe---EEEEeCCCCCC--eEEEEEcCCCCE-EEEEeCC-cEEEEeCCCCee--EEEEec
Q 006939 2 SGYFHFSGSADRTVKFWDLETFE---LIGSAGPETSG--VRCLTFNPDGRT-LLCGLHE-SLKVFSWEPIRC--HDAVDV 72 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~---~i~tl~~h~~~--V~sv~fsPdg~~-LvSgs~D-sIrVWdl~sg~~--i~t~~~ 72 (625)
.|.+++.|..||.|++||.+.-. .+..+..|... |.-+.+.+.|-- |++|+.+ .|++||++.... .-++..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 47899999999999999987543 47778889876 999999987755 8999998 999999987422 233445
Q ss_pred cC--C-ceeEEEec-CCCEEEEeeCCCeEEEEecc
Q 006939 73 GW--S-RLSDLNVH-EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 73 ~~--s-~v~~l~~~-dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+| + .+..+.+| ....++||+. +.|+||++.
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 56 3 36777776 4556777777 899999988
No 211
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0052 Score=63.68 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=75.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEE--EeCCCCCCeEEEEEcCC-CCEEEEEeCC-cEEEEeCC-CCeeEEE-EeccCCc
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIG--SAGPETSGVRCLTFNPD-GRTLLCGLHE-SLKVFSWE-PIRCHDA-VDVGWSR 76 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~--tl~~h~~~V~sv~fsPd-g~~LvSgs~D-sIrVWdl~-sg~~i~t-~~~~~s~ 76 (625)
|.-++++-.+|.+.+-+.....+.. .+++|.-.+....|+.. .+++++|++| .+..||++ ++.++.. ...|...
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 3446666667777654444333333 67888888888888764 4578899999 99999999 6777655 3456677
Q ss_pred eeEEEe--cCCCEEEEeeCCCeEEEEecc
Q 006939 77 LSDLNV--HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 77 v~~l~~--~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|.+|.. +.+.++++|+.|-+|++||.+
T Consensus 213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 213 VVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred eEEEecCCCCCceEEEeccccceeeeehh
Confidence 777776 678899999999999999998
No 212
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0033 Score=70.17 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=58.3
Q ss_pred EEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-cC--CCEEEEeeCCCeEEEE
Q 006939 25 LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HE--GKLLGCSYNQSCVGVW 100 (625)
Q Consensus 25 ~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~d--g~lL~sg~~Dg~V~vW 100 (625)
|-..+.||++.|++|...|.|.||++|+.| +++||.+.+|+|+.++.... .|.++.| +. -.+|+.+.. .++.|-
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~-~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVG-ECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEec-CceEEe
Confidence 345679999999999999999999999999 99999999999999886653 4777777 43 334444444 345554
Q ss_pred ec
Q 006939 101 VV 102 (625)
Q Consensus 101 dv 102 (625)
+.
T Consensus 470 np 471 (733)
T KOG0650|consen 470 NP 471 (733)
T ss_pred Cc
Confidence 43
No 213
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=0.0017 Score=71.89 Aligned_cols=102 Identities=12% Similarity=0.135 Sum_probs=81.7
Q ss_pred EEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC--------CeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCe
Q 006939 27 GSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP--------IRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSC 96 (625)
Q Consensus 27 ~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s--------g~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~ 96 (625)
.++.-|...++.+.|+|....|++|+.| +|++|.+.. .+.+.+|..|-++|.++.+ .++.++.+|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 3567788999999999999999999999 999999932 3457788899999999888 68999999999999
Q ss_pred EEEEeccCCcccccccc----ceeEEeccCCCccccc
Q 006939 97 VGVWVVDISRIEPYTIG----SVTRVNGLSESKSSAS 129 (625)
Q Consensus 97 V~vWdv~~~~~~~~~~~----~i~~l~gHs~~v~~~~ 129 (625)
|+.|++- ....++... ....+.||++.+....
T Consensus 368 I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~ 403 (577)
T KOG0642|consen 368 IRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLA 403 (577)
T ss_pred eeeeccC-CCCCcccccCcchhccceeccccceeeee
Confidence 9999887 444555433 3556778888775443
No 214
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=0.0063 Score=71.81 Aligned_cols=102 Identities=15% Similarity=0.253 Sum_probs=70.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCC-CCCeEEEEEcC-CCCEEEEEeCC-cEEEEeCCCCe---eEEEEecc--
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNP-DGRTLLCGLHE-SLKVFSWEPIR---CHDAVDVG-- 73 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h-~~~V~sv~fsP-dg~~LvSgs~D-sIrVWdl~sg~---~i~t~~~~-- 73 (625)
.|.++++|. -+.|+|||.++..+...+.-. ...|+++.-+- .|..++.|..| +|++||.+... .+.....|
T Consensus 1177 ~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1177 SGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND 1255 (1387)
T ss_pred CCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCC
Confidence 366666664 789999999988887766433 34466664333 36888888888 99999987532 23333333
Q ss_pred CCceeEEEe-cCCC-EEEEeeCCCeEEEEeccC
Q 006939 74 WSRLSDLNV-HEGK-LLGCSYNQSCVGVWVVDI 104 (625)
Q Consensus 74 ~s~v~~l~~-~dg~-lL~sg~~Dg~V~vWdv~~ 104 (625)
+.+|..+.+ ..|. .|++|+.+|.|++||++.
T Consensus 1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred cccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 333666666 3333 599999999999999995
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.98 E-value=0.0048 Score=68.34 Aligned_cols=113 Identities=11% Similarity=-0.017 Sum_probs=72.4
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCC-eEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCCCeeEEEEeccCCcee
Q 006939 1 MSGYFHFSGS-ADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLS 78 (625)
Q Consensus 1 PdG~lLASGS-~D~tVkIWDL~tg-~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~i~t~~~~~s~v~ 78 (625)
|||+.|+.++ .++...||++... .....+ .+.. .+..|+|||++++.++.+.+.+||+.++....... .+. ..
T Consensus 301 pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~-~~~-~~ 375 (429)
T PRK01742 301 PDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSS-TFL-DE 375 (429)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecC-CCC-CC
Confidence 7888776554 5788888876432 222233 3333 46789999999987776777779999887543221 221 12
Q ss_pred EEEe-cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCC
Q 006939 79 DLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSE 123 (625)
Q Consensus 79 ~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~ 123 (625)
...| ++|++|+.++.++.+.+|.+.. ..+.....+.+|..
T Consensus 376 ~~~~sPdG~~i~~~s~~g~~~~l~~~~-----~~G~~~~~l~~~~g 416 (429)
T PRK01742 376 SPSISPNGIMIIYSSTQGLGKVLQLVS-----ADGRFKARLPGSDG 416 (429)
T ss_pred CceECCCCCEEEEEEcCCCceEEEEEE-----CCCCceEEccCCCC
Confidence 3344 7999999998889888886531 12445555555544
No 216
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.0049 Score=71.36 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=78.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCC----CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCC
Q 006939 1 MSGYFHFSGSADRTVKFWDLET----FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWS 75 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~t----g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s 75 (625)
|+|.++|+|-.||.|.+|.--. ......+.=|...|.++.|+++|.+|+||++. .+-+|.+++++. +-+.--.+
T Consensus 215 pn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPRLgs 293 (792)
T KOG1963|consen 215 PNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLPRLGS 293 (792)
T ss_pred cccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-ccccccCC
Confidence 7899999999999999995321 11244555578999999999999999999999 888999999883 22333345
Q ss_pred ceeEEEe-cCCCEEEEeeCCCeEEEEec
Q 006939 76 RLSDLNV-HEGKLLGCSYNQSCVGVWVV 102 (625)
Q Consensus 76 ~v~~l~~-~dg~lL~sg~~Dg~V~vWdv 102 (625)
.+..+.+ +++.+.+....|+.|.+-..
T Consensus 294 ~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 294 PILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred eeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 6667666 78888877788888887755
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.93 E-value=0.017 Score=63.02 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=68.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-C-cEEEEeCCCCeeEEEEeccC----
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-E-SLKVFSWEPIRCHDAVDVGW---- 74 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-D-sIrVWdl~sg~~i~t~~~~~---- 74 (625)
|||+++..++.|+.|.+||+.+++.+.++..- .....+++++||++++.+.. . .+.|+|.++.+.+..+..+.
T Consensus 46 ~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~ 124 (369)
T PF02239_consen 46 PDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD 124 (369)
T ss_dssp T-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT
T ss_pred CCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccc
Confidence 68999999999999999999999999888653 45789999999999997765 3 89999999998887765432
Q ss_pred ---CceeEEEe-cCCCEEEEeeCC-CeEEEEecc
Q 006939 75 ---SRLSDLNV-HEGKLLGCSYNQ-SCVGVWVVD 103 (625)
Q Consensus 75 ---s~v~~l~~-~dg~lL~sg~~D-g~V~vWdv~ 103 (625)
..+..+.. +....++....| +.|.+-|..
T Consensus 125 ~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 125 GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp TS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred ccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 23444443 555544444443 555444433
No 218
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=96.88 E-value=0.0045 Score=64.01 Aligned_cols=98 Identities=7% Similarity=0.094 Sum_probs=71.0
Q ss_pred CEEEEEeCCCeEEEEECCC--CeE--EEEe-----CCCCCCeEEEEEcC-CCCEEEEEeCC-cEEEEeCCCCee---EEE
Q 006939 4 YFHFSGSADRTVKFWDLET--FEL--IGSA-----GPETSGVRCLTFNP-DGRTLLCGLHE-SLKVFSWEPIRC---HDA 69 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~t--g~~--i~tl-----~~h~~~V~sv~fsP-dg~~LvSgs~D-sIrVWdl~sg~~---i~t 69 (625)
.+|||.+ ..+|+|.+.. .+. ...+ ..+..++++..|+. |-+++.+.+-| ++.|||++.+.. ...
T Consensus 114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 3566654 3699998863 221 1111 34567889999987 56778888889 899999998733 233
Q ss_pred EeccCCceeEEEecC--CCEEEEeeCCCeEEEEecc
Q 006939 70 VDVGWSRLSDLNVHE--GKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 70 ~~~~~s~v~~l~~~d--g~lL~sg~~Dg~V~vWdv~ 103 (625)
+-.|-..|.+++|.. -.++++.+.||.|++||++
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 345778899999943 5678999999999999998
No 219
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.0058 Score=68.06 Aligned_cols=94 Identities=12% Similarity=0.214 Sum_probs=75.9
Q ss_pred CCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEecc-----------CCcee
Q 006939 11 ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG-----------WSRLS 78 (625)
Q Consensus 11 ~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~-----------~s~v~ 78 (625)
....|.-++|+.|..+..+....+.+.+|..++...+|++|+.+ .+-+||.++.....++... ...+.
T Consensus 153 sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT 232 (703)
T KOG2321|consen 153 SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT 232 (703)
T ss_pred cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce
Confidence 33457778999999999998888999999999999899999977 9999999875544333221 12377
Q ss_pred EEEec-CCCEEEEeeCCCeEEEEeccC
Q 006939 79 DLNVH-EGKLLGCSYNQSCVGVWVVDI 104 (625)
Q Consensus 79 ~l~~~-dg~lL~sg~~Dg~V~vWdv~~ 104 (625)
.+.|. +|-.+++|..+|.|.|||++.
T Consensus 233 al~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 233 ALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred EEEecCCceeEEeeccCCcEEEEEccc
Confidence 88885 599999999999999999993
No 220
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.86 E-value=0.015 Score=63.91 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=78.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEE---eCCC-CCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCce
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGS---AGPE-TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRL 77 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~t---l~~h-~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v 77 (625)
-.++++.+ .+.+.+|+++.+.+... ++++ ...|.|++|.++|.. ++|..+ .|.||+..+.+..+...+|-+.|
T Consensus 213 ~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv 290 (626)
T KOG2106|consen 213 PNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGV 290 (626)
T ss_pred CcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEeeecCCce
Confidence 34566655 56799999999887544 4443 357999999999976 466666 99999998877776666888888
Q ss_pred eEEEe-cCCCEEEEeeCCCeEEEEeccCCcccc
Q 006939 78 SDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 109 (625)
Q Consensus 78 ~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~~~~~ 109 (625)
..+.. .+|.+|. |+.|..|..||-+.++.++
T Consensus 291 ~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 291 FSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred EEEEEecCccEee-cCccceEEecccccccccc
Confidence 88877 5666665 9999999999966544443
No 221
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=96.85 E-value=0.0047 Score=65.05 Aligned_cols=101 Identities=16% Similarity=0.267 Sum_probs=73.3
Q ss_pred CCCEEEEEe----CCCeEEEEECCCCeE-EEEe-CCCCCCeEEEEEcCC-CCEEEEEeCC-cEEEEeCCCCee----EEE
Q 006939 2 SGYFHFSGS----ADRTVKFWDLETFEL-IGSA-GPETSGVRCLTFNPD-GRTLLCGLHE-SLKVFSWEPIRC----HDA 69 (625)
Q Consensus 2 dG~lLASGS----~D~tVkIWDL~tg~~-i~tl-~~h~~~V~sv~fsPd-g~~LvSgs~D-sIrVWdl~sg~~----i~t 69 (625)
+++++++|. .|-.|.|||++..+. ++.+ +.|...|++++|+|. ...|+||+.| -+.|||+....- +.+
T Consensus 128 k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v 207 (376)
T KOG1188|consen 128 KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV 207 (376)
T ss_pred cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh
Confidence 356777774 366789999998776 6665 679999999999995 5788999999 899999975322 222
Q ss_pred EeccCCceeEEEecCCC--EEEEeeCCCeEEEEecc
Q 006939 70 VDVGWSRLSDLNVHEGK--LLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 70 ~~~~~s~v~~l~~~dg~--lL~sg~~Dg~V~vWdv~ 103 (625)
+. +.+-|..+.|...+ .+.|-.+.....+|++.
T Consensus 208 iN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 208 IN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred hc-ccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 22 22335666663333 57777888899999887
No 222
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=96.83 E-value=0.004 Score=44.42 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=34.4
Q ss_pred CeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEe
Q 006939 64 IRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 101 (625)
Q Consensus 64 g~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWd 101 (625)
++++.++..|...|.++.+ +++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3677888889999999999 7899999999999999997
No 223
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.0022 Score=70.70 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=71.7
Q ss_pred CCCEEEEEeCCCeEEEEECCC-------CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCCCeeEEEE----
Q 006939 2 SGYFHFSGSADRTVKFWDLET-------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV---- 70 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~t-------g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~i~t~---- 70 (625)
+++-|++++.|+||++|.++. ..|..++..|+.+|..+.|-.+.++++++ ++.|++||.--|+.+..+
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~dap 824 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMEDAP 824 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhcCc
Confidence 567789999999999999853 34778899999999999999998888765 347999998766654322
Q ss_pred -eccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 71 -DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 71 -~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
......+.++-- +..-+++.++..++|+++|.+
T Consensus 825 k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR 859 (1034)
T KOG4190|consen 825 KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR 859 (1034)
T ss_pred ccCCCceeEecccCcchheeeeccchhhheeeecc
Confidence 112223333322 233333444778899999987
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.74 E-value=0.004 Score=69.29 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=74.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeC------CCCC-----CeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAG------PETS-----GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV 70 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~------~h~~-----~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~ 70 (625)
..+|++|+.|+.|-+||.++...+.++. .|.+ .|+++.|..+|-.++.|... .+.+||++..+.+.+-
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k 266 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK 266 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec
Confidence 5689999999999999998877655542 2323 39999999989889998887 9999999987765443
Q ss_pred e-ccCCceeEEEe--cCCCEEEEeeCCCeEEEEecc
Q 006939 71 D-VGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 71 ~-~~~s~v~~l~~--~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
. ....++..+.| .+++--+.+.+...++|||-.
T Consensus 267 dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 267 DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDEC 302 (703)
T ss_pred ccCCccceeeecccccCCCceEEecchHHhhhcccc
Confidence 2 33455666666 233334445566899999877
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.003 Score=67.47 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=62.1
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEE-eCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH 67 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~t-l~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i 67 (625)
|+|.++.+|..-+.+..||+++++++.. +++.++.+++|..+|.++++++|+-| .+||||..+.+.+
T Consensus 257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 6899999999999999999999999888 89999999999999999999999999 9999999885443
No 226
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.0071 Score=63.04 Aligned_cols=74 Identities=12% Similarity=0.227 Sum_probs=61.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC----CeeEEEEeccCCceeEEEe-c--CCCEEEEeeCCCeEEEEe
Q 006939 30 GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP----IRCHDAVDVGWSRLSDLNV-H--EGKLLGCSYNQSCVGVWV 101 (625)
Q Consensus 30 ~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s----g~~i~t~~~~~s~v~~l~~-~--dg~lL~sg~~Dg~V~vWd 101 (625)
.+|..-|+++.|.+-|+.+++|+.| +++|||.+. ..|...+..|-+.+..+.+ | -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4677889999999999999999999 999999753 3455566667777777777 2 699999999999999996
Q ss_pred cc
Q 006939 102 VD 103 (625)
Q Consensus 102 v~ 103 (625)
-.
T Consensus 90 E~ 91 (361)
T KOG2445|consen 90 EQ 91 (361)
T ss_pred ec
Confidence 53
No 227
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.68 E-value=0.0082 Score=71.87 Aligned_cols=86 Identities=19% Similarity=0.274 Sum_probs=69.3
Q ss_pred EECCCCeEEEEeCCCCCCeEEEEEcCCC-CEEEEEeCC-cEEEEeCCC-------CeeEEEEeccCCceeEEEe-cCCCE
Q 006939 18 WDLETFELIGSAGPETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEP-------IRCHDAVDVGWSRLSDLNV-HEGKL 87 (625)
Q Consensus 18 WDL~tg~~i~tl~~h~~~V~sv~fsPdg-~~LvSgs~D-sIrVWdl~s-------g~~i~t~~~~~s~v~~l~~-~dg~l 87 (625)
|.++ |.++..+..|...|..++.++.. .+|+||+.| +||+|+... .++..++....+.+..+.. ..+..
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 6654 88899999999988888887754 899999999 999999853 3455666655566667666 68889
Q ss_pred EEEeeCCCeEEEEeccC
Q 006939 88 LGCSYNQSCVGVWVVDI 104 (625)
Q Consensus 88 L~sg~~Dg~V~vWdv~~ 104 (625)
+++|+.||.|.+..++.
T Consensus 1113 ~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred EEEEcCCCeEEEEEccc
Confidence 99999999999999983
No 228
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.0027 Score=68.22 Aligned_cols=66 Identities=26% Similarity=0.487 Sum_probs=58.5
Q ss_pred EEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 37 RCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 37 ~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+++|+.+|..+++|+.| ++|||+|.....+.....+...|.++.| +++++|++-+.| ..+||+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec
Confidence 689999999999999999 9999999887766656667778999999 899999999998 89999998
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.62 E-value=0.0053 Score=69.24 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=64.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCcEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 35 GVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 35 ~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.|+.++|-|||..++-+..+.+.+||.+.|...+++.+|-..|+.+++ ++|+.+++|+.|..|-+|.-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 678999999999999888789999999999999999999999999998 899999999999999999766
No 230
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.61 E-value=0.0033 Score=67.27 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=55.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEE-eCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEe
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVD 71 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~t-l~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~ 71 (625)
||+++++++..|..|++-.+..--.|.. +-||+..|..++.-+ +..|+||+.| +|++||+.+|+++++++
T Consensus 161 ~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 161 PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCcccccc
Confidence 7899999999999999855543333444 468999999999875 4557888888 99999999999877663
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.49 E-value=0.033 Score=61.71 Aligned_cols=101 Identities=15% Similarity=0.004 Sum_probs=66.8
Q ss_pred CCCCEEEEEeC---CCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEE-EEeCC---cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHFSGSA---DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHE---SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLASGS~---D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~Lv-Sgs~D---sIrVWdl~sg~~i~t~~~~ 73 (625)
|||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+..|+|||+.++ +...+ .|.+||+.++..... ..+
T Consensus 211 pDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L-t~~ 288 (435)
T PRK05137 211 PNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL-TDS 288 (435)
T ss_pred CCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEc-cCC
Confidence 78998887764 468999999988753 4445556778889999998765 54443 488889888776443 223
Q ss_pred CCceeEEEe-cCCCEEEEeeC-CC--eEEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSYN-QS--CVGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~~-Dg--~V~vWdv~ 103 (625)
........+ ++|+.|+..+. ++ .|++||++
T Consensus 289 ~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 289 PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred CCccCceeEcCCCCEEEEEECCCCCCeEEEEECC
Confidence 333334455 78887766553 34 45555544
No 232
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=96.45 E-value=0.0077 Score=66.60 Aligned_cols=87 Identities=20% Similarity=0.285 Sum_probs=66.5
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
|...++++|+.|...++||-. |..+..-..|.-+|++++|+|+ ..++.|+.+++|+=..+.|.. +...|+
T Consensus 196 ~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~GSi---fnlsWS----- 265 (737)
T KOG1524|consen 196 TQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRVGSI---FNLSWS----- 265 (737)
T ss_pred ccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeeeeeeecCCCccce---EEEEEc-----
Confidence 356789999999999999976 7777777889999999999999 677788888888544333332 333455
Q ss_pred EecCCCEEEEeeCCCeEEE
Q 006939 81 NVHEGKLLGCSYNQSCVGV 99 (625)
Q Consensus 81 ~~~dg~lL~sg~~Dg~V~v 99 (625)
+||..++||...|.|-+
T Consensus 266 --~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 266 --ADGTQATCGTSTGQLIV 282 (737)
T ss_pred --CCCceeeccccCceEEE
Confidence 69999999888776543
No 233
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.44 E-value=0.009 Score=63.14 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCEEEEEeCCCeEEEEECCCC-----eEEEEeCCCCCCeEEEEEcC-CCCEEEEEeCC-cEEEEeCCCCee---EEEEec
Q 006939 3 GYFHFSGSADRTVKFWDLETF-----ELIGSAGPETSGVRCLTFNP-DGRTLLCGLHE-SLKVFSWEPIRC---HDAVDV 72 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg-----~~i~tl~~h~~~V~sv~fsP-dg~~LvSgs~D-sIrVWdl~sg~~---i~t~~~ 72 (625)
+.++..|+..|.|-.+||+.+ .+...+ -|.+.|.++..-. ++.+|++.+.+ +|++||++--+| +.+..+
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG 342 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG 342 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec
Confidence 678899999999999999865 222222 3678888886544 66777766666 999999998777 777766
Q ss_pred cCCceeEEE--e-cCCCEEEEeeCCCeEEEEecc
Q 006939 73 GWSRLSDLN--V-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 73 ~~s~v~~l~--~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|.+...-+- + ++...++++++|-..+||.++
T Consensus 343 HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 343 HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred ccccccccccccccccceEEEccCeeEEEEEecc
Confidence 654433332 2 467778889999999999988
No 234
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.38 E-value=0.0098 Score=39.42 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=33.0
Q ss_pred CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEe
Q 006939 23 FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 60 (625)
Q Consensus 23 g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWd 60 (625)
++++..+..|...|.++.|++++.++++++.| .+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667777888999999999999999999988 899986
No 235
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.22 E-value=0.054 Score=56.91 Aligned_cols=103 Identities=7% Similarity=0.006 Sum_probs=79.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC---eEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeC-CCCeeEEEE--ecc
Q 006939 1 MSGYFHFSGSADRTVKFWDLETF---ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW-EPIRCHDAV--DVG 73 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg---~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl-~sg~~i~t~--~~~ 73 (625)
+|+..+|.+-....|.||..... +..+++..|...|..|+|.|..+.|++|++| .-.||.. ..++-..++ .-.
T Consensus 20 ~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRi 99 (361)
T KOG1523|consen 20 SDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRI 99 (361)
T ss_pred CCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEe
Confidence 47888999999999999987654 4688999999999999999999999999999 8999998 444332221 111
Q ss_pred CCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
......+.+ +.+..+++|+....|.||-++
T Consensus 100 NrAAt~V~WsP~enkFAVgSgar~isVcy~E 130 (361)
T KOG1523|consen 100 NRAATCVKWSPKENKFAVGSGARLISVCYYE 130 (361)
T ss_pred ccceeeEeecCcCceEEeccCccEEEEEEEe
Confidence 223344455 788889999888999999776
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.20 E-value=0.079 Score=57.72 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=62.3
Q ss_pred CCCCEEEEEeCC---CeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEE-EEeCC---cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHFSGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHE---SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLASGS~D---~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~Lv-Sgs~D---sIrVWdl~sg~~i~t~~~~ 73 (625)
|||++|+.++.+ ..|.+||+.+++... +..+.+.+.++.|+|||+.|+ +...+ .|.+|++.++....... +
T Consensus 199 pdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-~ 276 (417)
T TIGR02800 199 PDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-G 276 (417)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC-C
Confidence 789999887654 479999999886543 233445667789999998765 44332 58899998776543322 2
Q ss_pred CCceeEEEe-cCCCEEEEee-CCCeEEEEec
Q 006939 74 WSRLSDLNV-HEGKLLGCSY-NQSCVGVWVV 102 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~-~Dg~V~vWdv 102 (625)
........+ ++++.|+..+ .++...+|.+
T Consensus 277 ~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 277 PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred CCCCCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 222223344 6888775544 3444344433
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=96.19 E-value=0.075 Score=59.01 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=65.2
Q ss_pred CCCCEEEEEe---CCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEE-eC--C-cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHFSGS---ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LH--E-SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLASGS---~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSg-s~--D-sIrVWdl~sg~~i~t~~~~ 73 (625)
|||+.|+-.+ .+..+.+||+.+++... +....+.+..+.|+|||+.|+.. .. + .|.+||+.++........
T Consensus 208 PDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~- 285 (429)
T PRK03629 208 PDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG- 285 (429)
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-
Confidence 7899888654 24578999999886432 22222334568999999987743 32 2 599999998876544332
Q ss_pred CCceeEEEe-cCCCEEEEeeC-CCeEEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSYN-QSCVGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~~-Dg~V~vWdv~ 103 (625)
...+....| ++|+.|+..+. ++...+|.++
T Consensus 286 ~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 286 RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred CCCcCceEECCCCCEEEEEeCCCCCceEEEEE
Confidence 233445555 78988766554 4556677554
No 238
>PRK03629 tolB translocation protein TolB; Provisional
Probab=96.18 E-value=0.1 Score=57.96 Aligned_cols=100 Identities=9% Similarity=-0.016 Sum_probs=62.9
Q ss_pred CCCCEEEEEeCC-CeEEEE--ECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC----cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHFSGSAD-RTVKFW--DLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLASGS~D-~tVkIW--DL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D----sIrVWdl~sg~~i~t~~~~ 73 (625)
|||+.|+..+.+ +...|| |+.+++. ..+..+.....+..|+|||++++..+.+ .|.+||+.++.... +...
T Consensus 296 PDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~ 373 (429)
T PRK03629 296 PDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT 373 (429)
T ss_pred CCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC
Confidence 789988777654 444555 6766654 3333334455678999999988765432 48899998876543 2222
Q ss_pred CCceeEEEe-cCCCEEEEeeCCCe---EEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSYNQSC---VGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~~Dg~---V~vWdv~ 103 (625)
+. .....| ++|++|+.++.++. +.+|+++
T Consensus 374 ~~-~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 374 FL-DETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred CC-CCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 21 122334 89999988877664 5566655
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=96.18 E-value=0.043 Score=60.79 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=63.4
Q ss_pred CCCCEEEEEeCC---CeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEE-EEeCC-cEEE--EeCCCCeeEEEEecc
Q 006939 1 MSGYFHFSGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHE-SLKV--FSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLASGS~D---~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~Lv-Sgs~D-sIrV--Wdl~sg~~i~t~~~~ 73 (625)
|||+.|+..+.+ ..|.+||+.+++... +....+.+.+..|+|||+.++ +...+ ...| +|...+... .+..+
T Consensus 205 PDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~ 282 (427)
T PRK02889 205 PDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-RLTQS 282 (427)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-ECCCC
Confidence 789998877643 359999999887643 222334566889999998776 45544 5444 455555433 23223
Q ss_pred CCceeEEEe-cCCCEEEEee-CCCeEEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSY-NQSCVGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~-~Dg~V~vWdv~ 103 (625)
........| ++|+.|+..+ .++...+|.++
T Consensus 283 ~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 283 SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 333334445 7888776544 45677788765
No 240
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=0.0096 Score=62.93 Aligned_cols=71 Identities=7% Similarity=0.053 Sum_probs=57.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeE---EEEeCCCCCCeEE--EEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEec
Q 006939 2 SGYFHFSGSADRTVKFWDLETFEL---IGSAGPETSGVRC--LTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV 72 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~---i~tl~~h~~~V~s--v~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~ 72 (625)
+++.|++.+.+++|++||++--++ +.+++||-..-.- +..++....++++++| ..|+|.++.|..+.++..
T Consensus 310 s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 310 SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 467888889999999999988777 9999999654332 3446677889999999 899999999988776643
No 241
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.11 E-value=0.016 Score=60.82 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=74.4
Q ss_pred CCCCEEEEEeCCCeEEEEEC-CCCe--EEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeE----EEEec
Q 006939 1 MSGYFHFSGSADRTVKFWDL-ETFE--LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH----DAVDV 72 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL-~tg~--~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i----~t~~~ 72 (625)
|....|++|+.|+...+|.. ..++ ....+.-+...+.+|.|+|.++.|+.|+.. .|.||-++...-= .+-.-
T Consensus 65 p~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkP 144 (361)
T KOG1523|consen 65 PKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKP 144 (361)
T ss_pred CCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCc
Confidence 45678999999999999998 3333 233455677899999999999999999887 7777766532110 00011
Q ss_pred cCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 73 GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 73 ~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+.|..+.+ +++-+|+.|+.|+..+||..-
T Consensus 145 irStv~sldWhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 145 IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred cccceeeeeccCCcceecccccCcceeEEEEe
Confidence 2244566666 588889999999999999654
No 242
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.09 E-value=0.019 Score=58.84 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=52.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEE-EEeCCCCCCeEEEEEcCC-CCEEEEEeCC-cEEEEeCCC
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELI-GSAGPETSGVRCLTFNPD-GRTLLCGLHE-SLKVFSWEP 63 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i-~tl~~h~~~V~sv~fsPd-g~~LvSgs~D-sIrVWdl~s 63 (625)
+.+++++|+.||.+-+||.+....+ ..+..|...+..+.|||. +..|++++.| ++..||-.+
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3567899999999999999887654 346889999999999994 6788899998 999999763
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=96.06 E-value=0.057 Score=56.92 Aligned_cols=89 Identities=16% Similarity=0.258 Sum_probs=65.6
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEe-CC-cEEEEeCCCCeeEEEEeccCCceeEEE
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-HE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 81 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs-~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~ 81 (625)
.+|...+.|+.|.+|++..-+--..+..-..++.+++|+|||+.++..+ -+ .|.||.+.+.++...-... ..+..+.
T Consensus 62 ~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK-~~~kg~~ 140 (447)
T KOG4497|consen 62 HILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK-TNVKGYA 140 (447)
T ss_pred eeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccc-cCceeEE
Confidence 3455667888999999998887777877788999999999997766544 46 8999999988775433222 2235566
Q ss_pred e-cCCCEEEEeeC
Q 006939 82 V-HEGKLLGCSYN 93 (625)
Q Consensus 82 ~-~dg~lL~sg~~ 93 (625)
| ++|++.+....
T Consensus 141 f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 141 FHPDGQFCAILSR 153 (447)
T ss_pred ECCCCceeeeeec
Confidence 6 68887755544
No 244
>PRK04922 tolB translocation protein TolB; Provisional
Probab=96.04 E-value=0.11 Score=57.70 Aligned_cols=101 Identities=14% Similarity=0.040 Sum_probs=64.9
Q ss_pred CCCCEEE-EEeCCC--eEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-C---cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHF-SGSADR--TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-E---SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLA-SGS~D~--tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-D---sIrVWdl~sg~~i~t~~~~ 73 (625)
|||+.|+ +.+.++ .|.+||+.+++. ..+..+........|+|||++++..+. + .|.++++.++....... +
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~ 334 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-Q 334 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec-C
Confidence 6887664 555555 589999998875 445555555577899999998876654 2 37777777766543221 1
Q ss_pred CCceeEEEe-cCCCEEEEeeCC-C--eEEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSYNQ-S--CVGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~~D-g--~V~vWdv~ 103 (625)
........+ ++|++++....+ + .|.+||+.
T Consensus 335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred CCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 122233455 788888665433 2 57888775
No 245
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.04 E-value=0.02 Score=66.95 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=52.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC---------C-cEEEEeCCC
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH---------E-SLKVFSWEP 63 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~---------D-sIrVWdl~s 63 (625)
++++|.+|..-|+|.+-|+.+++.++++..|++.|..+.. .|+.|++||. | .|+|||++.
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh
Confidence 6789999999999999999999999999999999987665 6889998764 5 599999875
No 246
>PRK04922 tolB translocation protein TolB; Provisional
Probab=96.04 E-value=0.066 Score=59.38 Aligned_cols=101 Identities=15% Similarity=0.049 Sum_probs=65.7
Q ss_pred CCCCEEEEEeCC---CeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEE-EEeCC---cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHFSGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHE---SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLASGS~D---~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~Lv-Sgs~D---sIrVWdl~sg~~i~t~~~~ 73 (625)
|||+.|+..+.+ ..|.+||+.+++... +..+.+...+..|+|||+.++ +.+.+ .|.+||+.++..... ..+
T Consensus 213 pDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l-t~~ 290 (433)
T PRK04922 213 PDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL-TNH 290 (433)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC-ccC
Confidence 789998887743 469999998887533 333334456789999998765 44433 599999998876442 223
Q ss_pred CCceeEEEe-cCCCEEEEee-CCCeEEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSY-NQSCVGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~-~Dg~V~vWdv~ 103 (625)
........| ++|+.|+.++ .++...+|.++
T Consensus 291 ~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~d 322 (433)
T PRK04922 291 FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVA 322 (433)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 333344555 7888776655 44555555444
No 247
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.02 E-value=0.096 Score=64.63 Aligned_cols=103 Identities=16% Similarity=0.098 Sum_probs=72.8
Q ss_pred CCCC-EEEEEeCCCeEEEEECCCCeEEEEeCC---------------------CCCCeEEEEEcCCCCEEEEEeCC-cEE
Q 006939 1 MSGY-FHFSGSADRTVKFWDLETFELIGSAGP---------------------ETSGVRCLTFNPDGRTLLCGLHE-SLK 57 (625)
Q Consensus 1 PdG~-lLASGS~D~tVkIWDL~tg~~i~tl~~---------------------h~~~V~sv~fsPdg~~LvSgs~D-sIr 57 (625)
|||. ++++-+.++.|++||+.++.......+ .......++|.++|.++++...+ .|+
T Consensus 749 pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIr 828 (1057)
T PLN02919 749 PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIK 828 (1057)
T ss_pred CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEE
Confidence 5666 666777789999999987653211110 01124688999999988877777 999
Q ss_pred EEeCCCCeeEEEEec-------------cCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 58 VFSWEPIRCHDAVDV-------------GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 58 VWdl~sg~~i~t~~~-------------~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+||..++.+...... .+.....+.+ ++|+++++-..++.|++||+.
T Consensus 829 viD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 829 KLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred EEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 999988776543321 1223456666 688888988899999999987
No 248
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.83 E-value=0.16 Score=55.97 Aligned_cols=100 Identities=11% Similarity=0.231 Sum_probs=79.4
Q ss_pred CCEEEEEeCCC-eEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 3 GYFHFSGSADR-TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 3 G~lLASGS~D~-tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
++-++-|..|+ .+-|||.++++.. .+.+--+.|.++..+++|..++.+.+. .|.+.|+.+|....+-......+.++
T Consensus 371 ~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf 449 (668)
T COG4946 371 PEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDF 449 (668)
T ss_pred CcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEE
Confidence 34567788888 8899999987754 445556889999999999998888777 89999999988765555566777888
Q ss_pred Ee-cCCCEEEEeeCCC----eEEEEecc
Q 006939 81 NV-HEGKLLGCSYNQS----CVGVWVVD 103 (625)
Q Consensus 81 ~~-~dg~lL~sg~~Dg----~V~vWdv~ 103 (625)
.+ +++++++-+..+| .|++||+.
T Consensus 450 ~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 450 DWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred EEcCCceeEEEecCcceeeeeEEEEecC
Confidence 88 6889999887766 67888887
No 249
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.60 E-value=0.19 Score=55.73 Aligned_cols=101 Identities=18% Similarity=0.126 Sum_probs=64.2
Q ss_pred CCCCEEE-EEeCCCe--EEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC----cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHF-SGSADRT--VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLA-SGS~D~t--VkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D----sIrVWdl~sg~~i~t~~~~ 73 (625)
|||+.|+ +.+.++. |.+||+.+++. ..+..+........|+|||+.++..+.. .|.+||+..+....... +
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~-~ 332 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF-G 332 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec-C
Confidence 7887664 6666665 66679887765 4455565667788999999987755532 58888987765544322 2
Q ss_pred CCceeEEEe-cCCCEEEEeeCC-C--eEEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSYNQ-S--CVGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~~D-g--~V~vWdv~ 103 (625)
........+ ++|+.|+....+ + .|.+||.+
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 222333444 788888665443 2 45556543
No 250
>PRK02889 tolB translocation protein TolB; Provisional
Probab=95.46 E-value=0.1 Score=57.89 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=61.1
Q ss_pred CeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC----cEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCE
Q 006939 13 RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKL 87 (625)
Q Consensus 13 ~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D----sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~l 87 (625)
..|.+||.. |.....+..+...+.+.+|+|||+.|+..+.+ .|.+||+.+++........ .......| ++|+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCCE
Confidence 356777764 55555566677889999999999988765532 4999999988765433222 22234445 78887
Q ss_pred EE-EeeCCCeEEEEecc
Q 006939 88 LG-CSYNQSCVGVWVVD 103 (625)
Q Consensus 88 L~-sg~~Dg~V~vWdv~ 103 (625)
|+ +...++...+|.++
T Consensus 254 la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 254 LAVALSRDGNSQIYTVN 270 (427)
T ss_pred EEEEEccCCCceEEEEE
Confidence 75 56777888888766
No 251
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.13 Score=57.63 Aligned_cols=92 Identities=12% Similarity=0.167 Sum_probs=67.8
Q ss_pred EeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC----cEEEEeCCCCeeEEEEeccCCceeEEEecC
Q 006939 9 GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEPIRCHDAVDVGWSRLSDLNVHE 84 (625)
Q Consensus 9 GS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D----sIrVWdl~sg~~i~t~~~~~s~v~~l~~~d 84 (625)
|-+--.+.|||++ +..+..+.. ++=.++-|+|.|++++-++-| .+-|||+.+.+++..+.+.+..+.+.. ++
T Consensus 290 GfMPAkvtifnlr-~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~-Pd 365 (566)
T KOG2315|consen 290 GFMPAKVTIFNLR-GKPVFDFPE--GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWS-PD 365 (566)
T ss_pred ecccceEEEEcCC-CCEeEeCCC--CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEc-CC
Confidence 4455677888876 666665542 445688899999998876654 599999999888887777666543333 79
Q ss_pred CCEEEEeeC------CCeEEEEeccC
Q 006939 85 GKLLGCSYN------QSCVGVWVVDI 104 (625)
Q Consensus 85 g~lL~sg~~------Dg~V~vWdv~~ 104 (625)
|.+++++.. |+.++||+...
T Consensus 366 Ge~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 366 GEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CcEEEEEeccccEEecCCeEEEEecC
Confidence 999877644 67899999873
No 252
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.039 Score=59.48 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=68.4
Q ss_pred EEEEECCCCeEEEEeCCCCCCeEEEEEcCCCC-EEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe--cCCCEEEE
Q 006939 15 VKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGC 90 (625)
Q Consensus 15 VkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~-~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~--~dg~lL~s 90 (625)
|++.+-.+++.+..+.+|+..|+.++|+|..+ ++..++.+ .|+|.|+++..+...+..+ ..+....| .+..++-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55555555665555677888999999999876 67788888 9999999998887777655 44555555 35667888
Q ss_pred eeCCCeEEEEecc
Q 006939 91 SYNQSCVGVWVVD 103 (625)
Q Consensus 91 g~~Dg~V~vWdv~ 103 (625)
|...|.|.|||++
T Consensus 254 Gl~nG~VlvyD~R 266 (463)
T KOG1645|consen 254 GLQNGMVLVYDMR 266 (463)
T ss_pred eccCceEEEEEcc
Confidence 8899999999998
No 253
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.32 E-value=0.05 Score=61.24 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=48.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 63 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s 63 (625)
|++..|+.|+.||.|.+||..++..... ...-.+..++|||+|..++.|+.. .+.+||..-
T Consensus 269 p~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 269 PSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 6789999999999999999877643322 223446789999999999998875 899999753
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.29 E-value=0.3 Score=53.22 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=64.0
Q ss_pred CCCCEEE-EEeCCC--eEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-C---cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHF-SGSADR--TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-E---SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLA-SGS~D~--tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-D---sIrVWdl~sg~~i~t~~~~ 73 (625)
|||+.|+ +.+.++ .|.+||+.+++.. .+..+........|+|||++|+..+. + .|.+|++.++..... ..+
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-~~~ 320 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL-TFR 320 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecC
Confidence 6887665 455444 5888999877643 34445445567789999998765543 2 477888877664332 222
Q ss_pred CCceeEEEe-cCCCEEEEeeCCC---eEEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSYNQS---CVGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~~Dg---~V~vWdv~ 103 (625)
........+ +++++++.+..++ .|.+||+.
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 233344455 7888887776664 56666665
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=95.21 E-value=0.049 Score=57.73 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=52.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeE-EEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFEL-IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 63 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~-i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s 63 (625)
|..++|.+|+.|..+.+||+--+.- ...+.+|...|+.+..-+.-+.+++++.| .|-+|+++.
T Consensus 207 ~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 207 PGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 3467899999999999999975554 45578899999999888888889999988 899999853
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.19 E-value=0.48 Score=50.96 Aligned_cols=103 Identities=21% Similarity=0.296 Sum_probs=69.6
Q ss_pred CCCCEEEEE-eCCCeEEEEECC--CCeE--EEEeC----CCC--CCeEEEEEcCCCCEEEEEeCC--cEEEEeCC--CCe
Q 006939 1 MSGYFHFSG-SADRTVKFWDLE--TFEL--IGSAG----PET--SGVRCLTFNPDGRTLLCGLHE--SLKVFSWE--PIR 65 (625)
Q Consensus 1 PdG~lLASG-S~D~tVkIWDL~--tg~~--i~tl~----~h~--~~V~sv~fsPdg~~LvSgs~D--sIrVWdl~--sg~ 65 (625)
|||+++... -.+.+|.+|++. ++.+ +..+. +.. .....|+++|||++|+....+ +|.+|++. ++.
T Consensus 201 pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 201 PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 577777554 467889999887 4443 22221 111 257899999999998877654 89999994 343
Q ss_pred e--EEEEeccCCceeEEEe-cCCCEEEEee-CCCeEEEEecc
Q 006939 66 C--HDAVDVGWSRLSDLNV-HEGKLLGCSY-NQSCVGVWVVD 103 (625)
Q Consensus 66 ~--i~t~~~~~s~v~~l~~-~dg~lL~sg~-~Dg~V~vWdv~ 103 (625)
. +..+..+......+.+ ++|++|+++. .++.|.+|+++
T Consensus 281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 3 3444544455677777 7888886665 66799999887
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=95.17 E-value=0.016 Score=71.91 Aligned_cols=83 Identities=16% Similarity=0.345 Sum_probs=65.8
Q ss_pred eCCCeEEEEECCC---CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEecCC
Q 006939 10 SADRTVKFWDLET---FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEG 85 (625)
Q Consensus 10 S~D~tVkIWDL~t---g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~~dg 85 (625)
+.++.+.+||--. ..+++ ..|.++++++++-|...+|++|+.+ .+++||++..+....+.. ++..
T Consensus 2312 ~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~~~ 2380 (2439)
T KOG1064|consen 2312 SDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LDTR 2380 (2439)
T ss_pred CCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hhhh
Confidence 4678999999532 23455 7899999999999999999999998 999999987665543322 1345
Q ss_pred CEEEEeeCCCeEEEEecc
Q 006939 86 KLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 86 ~lL~sg~~Dg~V~vWdv~ 103 (625)
.++++|+..|.++||++.
T Consensus 2381 ~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2381 EYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred heeeccCcccceEEEEcc
Confidence 578899999999999988
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=95.16 E-value=0.24 Score=55.13 Aligned_cols=102 Identities=13% Similarity=0.021 Sum_probs=63.2
Q ss_pred CCCCEEEEEe-CCCeEEEEE--CCC-CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC----cEEEEeCCCCeeEEEEec
Q 006939 1 MSGYFHFSGS-ADRTVKFWD--LET-FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEPIRCHDAVDV 72 (625)
Q Consensus 1 PdG~lLASGS-~D~tVkIWD--L~t-g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D----sIrVWdl~sg~~i~t~~~ 72 (625)
|||+.|+-.+ .++...||. +.. +.....+..+...+....|+|||++|+....+ .|.+||+.+++.......
T Consensus 290 PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~ 369 (428)
T PRK01029 290 PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS 369 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC
Confidence 7898777655 466666664 432 23344454455567788999999988754432 599999998876543322
Q ss_pred cCCceeEEEe-cCCCEEEEee-C--CCeEEEEecc
Q 006939 73 GWSRLSDLNV-HEGKLLGCSY-N--QSCVGVWVVD 103 (625)
Q Consensus 73 ~~s~v~~l~~-~dg~lL~sg~-~--Dg~V~vWdv~ 103 (625)
...+....+ ++|+.|+... . ...|.+||++
T Consensus 370 -~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 370 -PENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred -CCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 223344555 6888776433 2 2456666665
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.13 E-value=0.32 Score=53.61 Aligned_cols=100 Identities=12% Similarity=-0.012 Sum_probs=61.5
Q ss_pred CCCCEEEEEeCC---CeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEE-EEeCC---cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHFSGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHE---SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLASGS~D---~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~Lv-Sgs~D---sIrVWdl~sg~~i~t~~~~ 73 (625)
|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+ +...+ .|.+||+.++..... ..+
T Consensus 208 pDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l-t~~ 285 (430)
T PRK00178 208 PDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV-TNH 285 (430)
T ss_pred CCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc-ccC
Confidence 789988776644 368889999887533 332334455789999998776 44332 588899988765432 222
Q ss_pred CCceeEEEe-cCCCEEEEee-CCCeEEEEec
Q 006939 74 WSRLSDLNV-HEGKLLGCSY-NQSCVGVWVV 102 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~-~Dg~V~vWdv 102 (625)
........| ++|+.|+..+ .++...+|.+
T Consensus 286 ~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 286 PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred CCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 222333444 6888765544 3444444433
No 260
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.14 Score=59.35 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=70.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCC-----CCEEEEEeCCcEEEEeC--CCCeeEEEEeccC
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD-----GRTLLCGLHESLKVFSW--EPIRCHDAVDVGW 74 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPd-----g~~LvSgs~DsIrVWdl--~sg~~i~t~~~~~ 74 (625)
+|+++||||.||+|.|-.+-+.+..+++.-+ .++.+|+++|+ .+.+++|+.-.+-++.- -..+-.-..+.+-
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCc
Confidence 5899999999999999999988888777644 78999999999 45677777544555432 1111111234455
Q ss_pred CceeEEEecCCCEEEEeeCCCeEEEEecc
Q 006939 75 SRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 75 s~v~~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.|..+.| .|.+++=+.++| |+|||+.
T Consensus 161 G~I~~i~W-~g~lIAWand~G-v~vyd~~ 187 (846)
T KOG2066|consen 161 GPIHSIKW-RGNLIAWANDDG-VKVYDTP 187 (846)
T ss_pred cceEEEEe-cCcEEEEecCCC-cEEEecc
Confidence 66777776 466777776765 8999987
No 261
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=95.02 E-value=0.13 Score=55.19 Aligned_cols=103 Identities=17% Similarity=0.089 Sum_probs=76.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCC--CCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCee-EEEEe-c-cCCc
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC-HDAVD-V-GWSR 76 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h--~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~-i~t~~-~-~~s~ 76 (625)
..++.+|..+++|.+.|+++.+.+..+... .+.|+-+..+|..+.|++.+.+ .+.+||.+.... +..+. . ....
T Consensus 117 N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~ 196 (609)
T KOG4227|consen 117 NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN 196 (609)
T ss_pred CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcc
Confidence 467899999999999999999988877543 3589999999998888888888 899999875442 11111 1 1122
Q ss_pred eeEEEe-c-CCCEEEEeeCCCeEEEEeccCC
Q 006939 77 LSDLNV-H-EGKLLGCSYNQSCVGVWVVDIS 105 (625)
Q Consensus 77 v~~l~~-~-dg~lL~sg~~Dg~V~vWdv~~~ 105 (625)
...+-| + ...+|++....+-+.+||.+..
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 233334 2 6788899888899999999843
No 262
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.01 E-value=0.19 Score=56.72 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=57.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEeccCC
Q 006939 31 PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 105 (625)
Q Consensus 31 ~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~~ 105 (625)
...+.|.|++++|+...++.|+.| +|.+||...+....+ ... -....+.+ ++|.+++.|+..|.+.+||+.+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~-~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAE-FIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eec-ccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 456789999999999999999999 999999977644322 112 22345666 68999999999999999999843
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.00 E-value=0.68 Score=49.76 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=69.0
Q ss_pred CCCCEEEEEe-CCCeEEEEECCC-CeEEEE---eC----------CCCCCeEEEEEcCCCCEEEEEeCC--cEEEEeCCC
Q 006939 1 MSGYFHFSGS-ADRTVKFWDLET-FELIGS---AG----------PETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEP 63 (625)
Q Consensus 1 PdG~lLASGS-~D~tVkIWDL~t-g~~i~t---l~----------~h~~~V~sv~fsPdg~~LvSgs~D--sIrVWdl~s 63 (625)
|+|.+|+++. .+++|.+|++.. |.+... +. ......+++.|+|||++++....+ .|.+|++..
T Consensus 96 ~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 96 PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 6788888887 589999999987 443222 21 123568899999999998887654 899999976
Q ss_pred Ce--eE--EEEec-cCCceeEEEe-cCCCEE-EEeeCCCeEEEEecc
Q 006939 64 IR--CH--DAVDV-GWSRLSDLNV-HEGKLL-GCSYNQSCVGVWVVD 103 (625)
Q Consensus 64 g~--~i--~t~~~-~~s~v~~l~~-~dg~lL-~sg~~Dg~V~vWdv~ 103 (625)
.. .. ..+.. ....-..+.| ++++++ +....++.|.+|+++
T Consensus 176 ~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 176 DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 54 32 22221 2233456666 677776 556667889999876
No 264
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=94.95 E-value=0.14 Score=59.65 Aligned_cols=93 Identities=13% Similarity=0.255 Sum_probs=68.5
Q ss_pred CCCeEEEEECCCCeEEEE-----eCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC--CeeEEEEeccCC--ceeEE
Q 006939 11 ADRTVKFWDLETFELIGS-----AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP--IRCHDAVDVGWS--RLSDL 80 (625)
Q Consensus 11 ~D~tVkIWDL~tg~~i~t-----l~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s--g~~i~t~~~~~s--~v~~l 80 (625)
.+..+.+|+..++. ... -..|+-.+.|.+++|.++++++|..| .|.||.--. +.....-..||. .|.++
T Consensus 179 ~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred EeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence 45568889887754 111 13466668999999999999999888 999996332 111111123554 88999
Q ss_pred Ee-cCCCEEEEeeCCCeEEEEeccC
Q 006939 81 NV-HEGKLLGCSYNQSCVGVWVVDI 104 (625)
Q Consensus 81 ~~-~dg~lL~sg~~Dg~V~vWdv~~ 104 (625)
.| ++|.+|.+|+.++.+.+|.+..
T Consensus 258 ~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 258 SFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred EEecCCceEeecccceEEEEEeecC
Confidence 88 8999999999999999999883
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=94.87 E-value=0.088 Score=65.66 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=69.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC-CCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC-----CeeEE-----
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP-----IRCHD----- 68 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h-~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s-----g~~i~----- 68 (625)
|...+-+||+.|+.|++|....++.+.++..- ...|..+.|+..|+-+..+..| .|.+|...+ ++|+.
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~D 2297 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSD 2297 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccc
Confidence 34457789999999999998777766655321 2567777777777655444444 666666532 12211
Q ss_pred ---------------------------------EEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 69 ---------------------------------AVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 69 ---------------------------------t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+...|-+....+.+ |..++|++|+.+|.|++||++
T Consensus 2298 f~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2298 FRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred eeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehH
Confidence 01233344555665 889999999999999999998
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=94.83 E-value=0.12 Score=54.95 Aligned_cols=86 Identities=19% Similarity=0.324 Sum_probs=64.3
Q ss_pred CCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEE-EeccCCceeEEEe-cCCCEEEEeeCCCeE
Q 006939 21 ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA-VDVGWSRLSDLNV-HEGKLLGCSYNQSCV 97 (625)
Q Consensus 21 ~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t-~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V 97 (625)
..-.++.++.+|.+.+.+++|.+....+++|..| .+.+||+-..+-+.. ...+...+..+.. ..-+.|.+++.||.|
T Consensus 185 ~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i 264 (404)
T KOG1409|consen 185 NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGI 264 (404)
T ss_pred cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeE
Confidence 3345688899999999999999999999999999 999999865443321 2233344444433 456678888899999
Q ss_pred EEEeccCCc
Q 006939 98 GVWVVDISR 106 (625)
Q Consensus 98 ~vWdv~~~~ 106 (625)
-+|+++.++
T Consensus 265 ~~w~mn~~r 273 (404)
T KOG1409|consen 265 VVWNMNVKR 273 (404)
T ss_pred EEEecccee
Confidence 999999544
No 267
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=94.78 E-value=0.089 Score=60.20 Aligned_cols=106 Identities=11% Similarity=0.044 Sum_probs=69.6
Q ss_pred CEEEEEeCCCeEEE---EECCCCe-----EEEEeCCCCCCeEEEEEcCCCCE-EEEEeCCcEEEEeCC-CCeeEEEEecc
Q 006939 4 YFHFSGSADRTVKF---WDLETFE-----LIGSAGPETSGVRCLTFNPDGRT-LLCGLHESLKVFSWE-PIRCHDAVDVG 73 (625)
Q Consensus 4 ~lLASGS~D~tVkI---WDL~tg~-----~i~tl~~h~~~V~sv~fsPdg~~-LvSgs~DsIrVWdl~-sg~~i~t~~~~ 73 (625)
..|+.|+.+|.|.- +++.... .+..+..|.+.|+++.++|=+.. |+++++.++++|.-. ....+..+..+
T Consensus 361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~ 440 (555)
T KOG1587|consen 361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS 440 (555)
T ss_pred ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc
Confidence 46788999998865 3333332 23356678899999999996654 445653399999976 33333223223
Q ss_pred CCceeEEEe--cCCCEEEEeeCCCeEEEEeccCCcccc
Q 006939 74 WSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISRIEP 109 (625)
Q Consensus 74 ~s~v~~l~~--~dg~lL~sg~~Dg~V~vWdv~~~~~~~ 109 (625)
-..+.++++ ....+++++..+|.+.+||+......|
T Consensus 441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 333445555 255678888999999999998555444
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.75 E-value=0.37 Score=53.88 Aligned_cols=101 Identities=15% Similarity=0.020 Sum_probs=61.1
Q ss_pred CCCCEEEEEeCC-C--eEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEE-EeCC---cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHFSGSAD-R--TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLC-GLHE---SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLASGS~D-~--tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvS-gs~D---sIrVWdl~sg~~i~t~~~~ 73 (625)
|||+.|+-.+.+ + .|.+||+.+++... +....+......|+|||+.|+. ...+ .|.+||+.++...... .+
T Consensus 227 PDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt-~~ 304 (448)
T PRK04792 227 PDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT-RH 304 (448)
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc-cC
Confidence 789988776543 2 58888998877532 2222233456899999997764 4433 4888898877654322 22
Q ss_pred CCceeEEEe-cCCCEEEEee-CCCeEEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSY-NQSCVGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~-~Dg~V~vWdv~ 103 (625)
........| ++++.|+..+ .++...+|.++
T Consensus 305 ~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 305 RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 223334445 7888775544 34555555444
No 269
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=94.63 E-value=0.24 Score=57.39 Aligned_cols=120 Identities=14% Similarity=0.054 Sum_probs=92.6
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcC---CCCEEEEEeCC--cEEEEeCCCCeeEEEEeccCCcee
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP---DGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLS 78 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsP---dg~~LvSgs~D--sIrVWdl~sg~~i~t~~~~~s~v~ 78 (625)
-+||++.-.|.|.+||...+..+..+..|...+..++|-+ +.+.++.+-++ +|-+|+..+|..++..+..-..+.
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs 159 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS 159 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee
Confidence 3678888899999999999999999999999999999865 45444444444 899999999999887777667777
Q ss_pred EEEe--cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCC
Q 006939 79 DLNV--HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSE 123 (625)
Q Consensus 79 ~l~~--~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~ 123 (625)
++.+ .+.+++..-+..|.|.+.+.-...+....++..+....|++
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sd 206 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSD 206 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccc
Confidence 7776 37777766677788888776655555556777777777766
No 270
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=94.56 E-value=0.094 Score=55.35 Aligned_cols=125 Identities=18% Similarity=0.163 Sum_probs=90.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-C-cEEEEeCCCCeeEEEEeccCCcee
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-E-SLKVFSWEPIRCHDAVDVGWSRLS 78 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-D-sIrVWdl~sg~~i~t~~~~~s~v~ 78 (625)
|+|+++|+.+.- .+-|-|.++.+....+.. -..|.-+.|..|..+++++.. + .|.+|++..-+-...++.+...+.
T Consensus 18 p~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls 95 (447)
T KOG4497|consen 18 PCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLS 95 (447)
T ss_pred CCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcce
Confidence 789999999865 677888887775443332 356777889999988887664 5 899999998888888888888888
Q ss_pred EEEe-cCCCE-EEEeeCCCeEEEEeccCCcc--ccccccceeEEeccCCCccc
Q 006939 79 DLNV-HEGKL-LGCSYNQSCVGVWVVDISRI--EPYTIGSVTRVNGLSESKSS 127 (625)
Q Consensus 79 ~l~~-~dg~l-L~sg~~Dg~V~vWdv~~~~~--~~~~~~~i~~l~gHs~~v~~ 127 (625)
.+.+ |+|++ |.++..+..|.||.+..+.. -++...++.....|.+....
T Consensus 96 ~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 96 SISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFC 148 (447)
T ss_pred eeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCcee
Confidence 8888 89965 46777888999998873332 23334444555555555443
No 271
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.48 E-value=0.051 Score=62.34 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=72.7
Q ss_pred CEEEEEeCCCeEEEEECCCCe-EEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCe-eEEEEeccCCceeEE
Q 006939 4 YFHFSGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR-CHDAVDVGWSRLSDL 80 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~-~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~-~i~t~~~~~s~v~~l 80 (625)
-.||+++.|..|..||++.-. .+..+.....+...|+|+-....++..+++ .|+|||.+-|. ...++..+...+..+
T Consensus 128 dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~ 207 (1081)
T KOG0309|consen 128 DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSI 207 (1081)
T ss_pred cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehH
Confidence 468999999999999998754 355555556777899999754444444556 89999998654 445555566666666
Q ss_pred Eec--CCCEEEEeeCCCeEEEEecc
Q 006939 81 NVH--EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 81 ~~~--dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.|. -...+.++..|++|++||.+
T Consensus 208 ~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 208 DFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred HHhhhhhhhhcccCCCCceeeeccc
Confidence 652 23456778889999999988
No 272
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.46 E-value=0.7 Score=50.91 Aligned_cols=101 Identities=16% Similarity=0.013 Sum_probs=62.1
Q ss_pred CCCCEEE-EEeCCC--eEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-C---cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHF-SGSADR--TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-E---SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLA-SGS~D~--tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-D---sIrVWdl~sg~~i~t~~~~ 73 (625)
|||+.|+ +.+.++ .|.+||+.+++.. .+..+........|+|||..++..+. + .|.+|++.++....... .
T Consensus 252 pDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~ 329 (430)
T PRK00178 252 PDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-V 329 (430)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-C
Confidence 7888776 555555 5778899987754 34445555667889999987764443 2 58888888776543321 1
Q ss_pred CCceeEEEe-cCCCEEEEeeC-CC--eEEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSYN-QS--CVGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~~-Dg--~V~vWdv~ 103 (625)
........+ ++|+.|+.... ++ .|.+||+.
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred CCCccceEECCCCCEEEEEEccCCceEEEEEECC
Confidence 122222334 78888866553 33 35556654
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.41 E-value=0.58 Score=50.80 Aligned_cols=73 Identities=22% Similarity=0.176 Sum_probs=57.1
Q ss_pred CCCCEEEEEeC----------CCeEEEEECCCCeEEEEeCC----C---CCCeEEEEEcCCCCEEEEEe-C-C-cEEEEe
Q 006939 1 MSGYFHFSGSA----------DRTVKFWDLETFELIGSAGP----E---TSGVRCLTFNPDGRTLLCGL-H-E-SLKVFS 60 (625)
Q Consensus 1 PdG~lLASGS~----------D~tVkIWDL~tg~~i~tl~~----h---~~~V~sv~fsPdg~~LvSgs-~-D-sIrVWd 60 (625)
|||+.|+.+.. +..|.+||+.+.+.+..+.. + ......+.++|||++++... . + .+-|.|
T Consensus 55 pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD 134 (352)
T TIGR02658 55 SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVD 134 (352)
T ss_pred CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEE
Confidence 68888877665 77899999999999887753 2 22345788999999988655 3 4 899999
Q ss_pred CCCCeeEEEEecc
Q 006939 61 WEPIRCHDAVDVG 73 (625)
Q Consensus 61 l~sg~~i~t~~~~ 73 (625)
+.+++.+..+.+.
T Consensus 135 ~~~~kvv~ei~vp 147 (352)
T TIGR02658 135 LEGKAFVRMMDVP 147 (352)
T ss_pred CCCCcEEEEEeCC
Confidence 9999988877653
No 274
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=94.33 E-value=0.043 Score=56.27 Aligned_cols=89 Identities=10% Similarity=0.173 Sum_probs=61.9
Q ss_pred EEEEECCCCeEEEEeCCCCCCeEEEEEcCCCC-EEEEEeCC-cEEEEeCCCCeeE-EEEeccCCceeEEEec--CCCEEE
Q 006939 15 VKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPIRCH-DAVDVGWSRLSDLNVH--EGKLLG 89 (625)
Q Consensus 15 VkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~-~LvSgs~D-sIrVWdl~sg~~i-~t~~~~~s~v~~l~~~--dg~lL~ 89 (625)
.++|+++..+.+.....-...|.+++-+|.-. .+++|++| .+-+||++..... ..+..|...+..+.|| ++..|+
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 45676654443333223334599999999654 55567777 8999999876432 2335566677777773 788999
Q ss_pred EeeCCCeEEEEecc
Q 006939 90 CSYNQSCVGVWVVD 103 (625)
Q Consensus 90 sg~~Dg~V~vWdv~ 103 (625)
+++.||.+--||..
T Consensus 241 t~sedGslw~wdas 254 (319)
T KOG4714|consen 241 TCSEDGSLWHWDAS 254 (319)
T ss_pred EecCCCcEEEEcCC
Confidence 99999999999876
No 275
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.22 E-value=0.2 Score=58.91 Aligned_cols=99 Identities=20% Similarity=0.327 Sum_probs=77.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 81 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~ 81 (625)
+..+..|+.-..+--+|+++.+..+......++|.-++. +++++++|... +|.+-|.++.+.+.++..|.+.+.++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 344556665555666899999888887776667776665 57888888876 999999999999999999999999998
Q ss_pred ecCCCEEEEeeC--------CCeEEEEecc
Q 006939 82 VHEGKLLGCSYN--------QSCVGVWVVD 103 (625)
Q Consensus 82 ~~dg~lL~sg~~--------Dg~V~vWdv~ 103 (625)
+++..++.||.. |..|+|||++
T Consensus 225 v~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 225 VQGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ccCCeEEEeecccccccccccchhhhhhhh
Confidence 876666666644 4578999999
No 276
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.04 E-value=0.84 Score=51.05 Aligned_cols=100 Identities=12% Similarity=0.053 Sum_probs=61.8
Q ss_pred CCCCEEE-EEeCCCe--EEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-C---cEEEEeCCCCeeEEEE-ec
Q 006939 1 MSGYFHF-SGSADRT--VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-E---SLKVFSWEPIRCHDAV-DV 72 (625)
Q Consensus 1 PdG~lLA-SGS~D~t--VkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-D---sIrVWdl~sg~~i~t~-~~ 72 (625)
|||+.|+ +.+.++. |.+||+.+++.. .+..+........|+|||++++..+. + .|.++|+.+++..... ..
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g 349 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG 349 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC
Confidence 7888775 4566665 677788877653 44445455677899999998765443 2 4777788777654432 22
Q ss_pred cCCceeEEEe-cCCCEEEEeeC-CCeEEEEecc
Q 006939 73 GWSRLSDLNV-HEGKLLGCSYN-QSCVGVWVVD 103 (625)
Q Consensus 73 ~~s~v~~l~~-~dg~lL~sg~~-Dg~V~vWdv~ 103 (625)
.+. ....+ ++|++|+.... ++...+|-++
T Consensus 350 ~~~--~~~~~SpDG~~l~~~~~~~g~~~I~~~d 380 (448)
T PRK04792 350 EQN--LGGSITPDGRSMIMVNRTNGKFNIARQD 380 (448)
T ss_pred CCC--cCeeECCCCCEEEEEEecCCceEEEEEE
Confidence 221 22334 78888755543 4555665444
No 277
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=94.00 E-value=0.049 Score=59.89 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=61.3
Q ss_pred EEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEE-eccCCceeEEEe---cCCCEEEEeeCCCeEEE
Q 006939 25 LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-DVGWSRLSDLNV---HEGKLLGCSYNQSCVGV 99 (625)
Q Consensus 25 ~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~-~~~~s~v~~l~~---~dg~lL~sg~~Dg~V~v 99 (625)
+...+.+|.+-|..|.|+..|.++++|++| .|.+|||..+.....+ .+|...+....| .+.+.+++++.||.|++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 345678999999999999999999999999 9999999877654443 334444444444 47788999999999988
Q ss_pred Eecc
Q 006939 100 WVVD 103 (625)
Q Consensus 100 Wdv~ 103 (625)
=.+.
T Consensus 214 s~i~ 217 (559)
T KOG1334|consen 214 SEIL 217 (559)
T ss_pred eeec
Confidence 7655
No 278
>PRK01029 tolB translocation protein TolB; Provisional
Probab=93.97 E-value=0.65 Score=51.67 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=57.2
Q ss_pred CCCCEEEEEeC-----CCeEEEEECCCC---eEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-C-c--EEEEeCCC-CeeE
Q 006939 1 MSGYFHFSGSA-----DRTVKFWDLETF---ELIGSAGPETSGVRCLTFNPDGRTLLCGLH-E-S--LKVFSWEP-IRCH 67 (625)
Q Consensus 1 PdG~lLASGS~-----D~tVkIWDL~tg---~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-D-s--IrVWdl~s-g~~i 67 (625)
|||+.||-.+. |..+.+|++..+ +......++........|+|||+.|+..+. + . |.++++.. +...
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 78988876542 334556887753 333333333334467899999997765443 3 3 55555542 2222
Q ss_pred EEEeccCCceeEEEe-cCCCEEEEeeCC---CeEEEEecc
Q 006939 68 DAVDVGWSRLSDLNV-HEGKLLGCSYNQ---SCVGVWVVD 103 (625)
Q Consensus 68 ~t~~~~~s~v~~l~~-~dg~lL~sg~~D---g~V~vWdv~ 103 (625)
..+..+...+....+ ++|+.|+....+ ..|.+||+.
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA 359 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 323222233344455 789888655432 357777765
No 279
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=93.46 E-value=1.2 Score=47.74 Aligned_cols=102 Identities=20% Similarity=0.382 Sum_probs=69.0
Q ss_pred CCCCEEEEEe--CCCeEEEEECCCCeEEEEe---CCCCCCeEEEEEcCCCCEEEEEeC-C-cEEEEeCCC--Ce--eEEE
Q 006939 1 MSGYFHFSGS--ADRTVKFWDLETFELIGSA---GPETSGVRCLTFNPDGRTLLCGLH-E-SLKVFSWEP--IR--CHDA 69 (625)
Q Consensus 1 PdG~lLASGS--~D~tVkIWDL~tg~~i~tl---~~h~~~V~sv~fsPdg~~LvSgs~-D-sIrVWdl~s--g~--~i~t 69 (625)
|+|++|++.. .|+ |.+|++..|++-..- -.-..+-+-|.|||++++++.-.. + +|.||..++ ++ +++.
T Consensus 154 P~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 154 PDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred CCCCEEEEeecCCce-EEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 7898888875 564 889999988763221 133567899999999998775543 5 899999987 33 2333
Q ss_pred E---e---ccCCceeEEEe-cCCCEEEEeeC-CCeEEEEecc
Q 006939 70 V---D---VGWSRLSDLNV-HEGKLLGCSYN-QSCVGVWVVD 103 (625)
Q Consensus 70 ~---~---~~~s~v~~l~~-~dg~lL~sg~~-Dg~V~vWdv~ 103 (625)
+ . .+.....+|++ ++|++|..+.. ...|.+|-++
T Consensus 233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 2 1 13345677777 79999966633 2366666665
No 280
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=93.40 E-value=0.32 Score=51.80 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=64.1
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEE----E------------eCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCC-Cee
Q 006939 4 YFHFSGSADRTVKFWDLETFELIG----S------------AGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP-IRC 66 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~----t------------l~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~s-g~~ 66 (625)
.+|+=.+..|+|+|.|++..-+.- . +.+--..|..+.|+..|+++++-..-+|+|||++. .+.
T Consensus 227 n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~p 306 (433)
T KOG1354|consen 227 NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKP 306 (433)
T ss_pred cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCc
Confidence 355666788999999998432210 0 11113567889999999999986666999999942 333
Q ss_pred EEEEeccC------------Ccee---EEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 67 HDAVDVGW------------SRLS---DLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 67 i~t~~~~~------------s~v~---~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.+..+|- ..+. .+.+ .++.++.+|+..+.+++|+..
T Consensus 307 v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 307 VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 33222110 0011 1122 467799999999999999865
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.35 E-value=1.3 Score=54.95 Aligned_cols=101 Identities=5% Similarity=-0.027 Sum_probs=66.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCC---------C------CCCeEEEEEcCCCCEEE-EEeCC-cEEEEeCCCC
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGP---------E------TSGVRCLTFNPDGRTLL-CGLHE-SLKVFSWEPI 64 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~---------h------~~~V~sv~fsPdg~~Lv-Sgs~D-sIrVWdl~sg 64 (625)
+|.++++.+.++.|++||..++... .+.+ + ......|+|+|+|.+++ +-..+ .|++||+.++
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 5677788888899999999877643 2211 1 12345799999998555 44444 8999999876
Q ss_pred eeEEEEec---------------------cCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 65 RCHDAVDV---------------------GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 65 ~~i~t~~~---------------------~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
........ .......+.+ ++|.++++-..++.|++||.+
T Consensus 773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 53211100 0111234555 678888888889999999986
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.31 E-value=0.34 Score=54.38 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=71.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-----------C-cEEEEeCCCCeeEE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-----------E-SLKVFSWEPIRCHD 68 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-----------D-sIrVWdl~sg~~i~ 68 (625)
|-|.+|+|--.-| |.+|--+.+..++.+- | .+|..+.|+|..++|++-+. + .|+|||+.+|...+
T Consensus 220 P~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr 296 (698)
T KOG2314|consen 220 PKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR 296 (698)
T ss_pred CCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhc
Confidence 6788888877665 7889766666555553 3 67999999999999998542 2 69999999998877
Q ss_pred EEec--cCCceeEE-Ee-cCCCEEEEeeCCCeEEEEecc
Q 006939 69 AVDV--GWSRLSDL-NV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 69 t~~~--~~s~v~~l-~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+.. .......+ .+ ++++++++-.. ..|.||+..
T Consensus 297 sF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtp 334 (698)
T KOG2314|consen 297 SFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETP 334 (698)
T ss_pred ceeccCCCccccceEEeccCCceeEEecc-ceEEEEecC
Confidence 7654 21112222 23 79999988766 468888765
No 283
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=92.90 E-value=2.1 Score=46.53 Aligned_cols=89 Identities=13% Similarity=0.027 Sum_probs=65.2
Q ss_pred CeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-----------CcEEEEeCCCCeeEEEEeccCC------
Q 006939 13 RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-----------ESLKVFSWEPIRCHDAVDVGWS------ 75 (625)
Q Consensus 13 ~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-----------DsIrVWdl~sg~~i~t~~~~~s------ 75 (625)
++|.+.|..+++.+.++..-..+ +.+ ++|||+.++.+.. |.|.|||..+.+....+..+-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 78999999999999887543222 234 8999998887655 3899999999998877764322
Q ss_pred -ceeEEEe-cCCCEEEEee-C-CCeEEEEecc
Q 006939 76 -RLSDLNV-HEGKLLGCSY-N-QSCVGVWVVD 103 (625)
Q Consensus 76 -~v~~l~~-~dg~lL~sg~-~-Dg~V~vWdv~ 103 (625)
....+.+ ++|++|.... . ++.|.++|+.
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~ 136 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE 136 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECC
Confidence 1123344 7898887554 4 7899999988
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=92.87 E-value=2.3 Score=44.41 Aligned_cols=29 Identities=17% Similarity=0.531 Sum_probs=24.5
Q ss_pred CceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 75 SRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 75 s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+..+.+ |+|.+|++...+|.|.+|++-
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 44555665 899999999999999999887
No 285
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=92.75 E-value=2.3 Score=47.95 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=57.7
Q ss_pred eEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEE--eCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEE
Q 006939 14 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG--LHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLG 89 (625)
Q Consensus 14 tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSg--s~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~ 89 (625)
++.+.++....+...+.. .++|+++.|+|+|+-|+.+ -.= ++-|||++..-. ++.+.++-+.+.| +.|.+++
T Consensus 252 ~Lyll~t~g~s~~V~L~k-~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v---~df~egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLK-EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV---FDFPEGPRNTAFFNPHGNIIL 327 (566)
T ss_pred eEEEEEecCceEEEecCC-CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe---EeCCCCCccceEECCCCCEEE
Confidence 566666664444444443 5899999999999766543 333 799999865433 3445555666777 6777765
Q ss_pred EeeC---CCeEEEEecc
Q 006939 90 CSYN---QSCVGVWVVD 103 (625)
Q Consensus 90 sg~~---Dg~V~vWdv~ 103 (625)
.++- .|.|-|||+.
T Consensus 328 lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVP 344 (566)
T ss_pred EeecCCCCCceEEEecc
Confidence 5444 3689999987
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=92.52 E-value=0.83 Score=47.34 Aligned_cols=96 Identities=7% Similarity=-0.059 Sum_probs=61.3
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC-CeeE-EEEec---cCCceeE
Q 006939 6 HFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP-IRCH-DAVDV---GWSRLSD 79 (625)
Q Consensus 6 LASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s-g~~i-~t~~~---~~s~v~~ 79 (625)
+.-++.|.++++.+++-+..-..+....-.+..+++++|++|.++-++- .|..|.+.. ++-+ .+... ..+. .
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF--~ 208 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF--Y 208 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce--e
Confidence 4456788999998876443322211111237889999999999887776 788888764 2222 21111 1111 1
Q ss_pred EEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 80 LNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 80 l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..| .....++++..||++.|||++
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVR 233 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEec
Confidence 122 466778999999999999998
No 287
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=92.52 E-value=0.055 Score=59.53 Aligned_cols=63 Identities=22% Similarity=0.254 Sum_probs=56.1
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 63 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s 63 (625)
|..+++++||.-|.|.||+-.+++.|..+++-..-|.|+.=||--..|++.+-| .||||...+
T Consensus 404 PrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 404 PRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred CccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 567899999999999999999999999888766689999999988999999989 899998744
No 288
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=92.38 E-value=0.47 Score=30.83 Aligned_cols=36 Identities=11% Similarity=0.279 Sum_probs=26.7
Q ss_pred eEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEe
Q 006939 66 CHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 101 (625)
Q Consensus 66 ~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWd 101 (625)
+...+..+...+..+.+ +.+.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34444455566777777 5678899999999999996
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=0.11 Score=57.74 Aligned_cols=76 Identities=9% Similarity=0.229 Sum_probs=59.9
Q ss_pred EEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC-------CeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCe
Q 006939 26 IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP-------IRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSC 96 (625)
Q Consensus 26 i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s-------g~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~ 96 (625)
+..+.||+..|+.+.--.+.+-+++++.| ++++|.+++ ..|..++..|...+.++.| .+-+.+++ -||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 34578999999998766677788999999 999999874 3478888888888999888 45555554 4678
Q ss_pred EEEEecc
Q 006939 97 VGVWVVD 103 (625)
Q Consensus 97 V~vWdv~ 103 (625)
|.+||.=
T Consensus 806 iHlWDPF 812 (1034)
T KOG4190|consen 806 IHLWDPF 812 (1034)
T ss_pred ceeeccc
Confidence 9999854
No 290
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=92.19 E-value=2.2 Score=45.76 Aligned_cols=103 Identities=19% Similarity=0.189 Sum_probs=71.3
Q ss_pred CCCCEEEEEeC-CCeEEEEECCC-CeEEE--EeCCCCCC----------eEEEEEcCCCCEEEEEeCC--cEEEEeCCCC
Q 006939 1 MSGYFHFSGSA-DRTVKFWDLET-FELIG--SAGPETSG----------VRCLTFNPDGRTLLCGLHE--SLKVFSWEPI 64 (625)
Q Consensus 1 PdG~lLASGS~-D~tVkIWDL~t-g~~i~--tl~~h~~~----------V~sv~fsPdg~~LvSgs~D--sIrVWdl~sg 64 (625)
++|++++++.. -+.|.++-+.. |.+.. ....|.+. +.+..|.|+++++++...+ .|.+|++..|
T Consensus 98 ~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg 177 (346)
T COG2706 98 EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG 177 (346)
T ss_pred CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence 47888888874 56889998865 44322 22334444 8999999999999987654 8999999977
Q ss_pred eeEEEE--e-ccCCceeEEEe-cCCCEE-EEeeCCCeEEEEecc
Q 006939 65 RCHDAV--D-VGWSRLSDLNV-HEGKLL-GCSYNQSCVGVWVVD 103 (625)
Q Consensus 65 ~~i~t~--~-~~~s~v~~l~~-~dg~lL-~sg~~Dg~V~vWdv~ 103 (625)
.....- . .....-..|.| +++++. +..--+++|.+|..+
T Consensus 178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 653211 1 12233466777 688876 455567899999887
No 291
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=92.08 E-value=0.6 Score=49.78 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=53.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCC-CCeeEEEEeccCCc-------eeEEEe--cCCCEEEEeeCCCeEEE
Q 006939 30 GPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE-PIRCHDAVDVGWSR-------LSDLNV--HEGKLLGCSYNQSCVGV 99 (625)
Q Consensus 30 ~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~-sg~~i~t~~~~~s~-------v~~l~~--~dg~lL~sg~~Dg~V~v 99 (625)
..|+--|.+|.++.|+..++++.+=.|.+|.++ +.++..+++..-.. +....| +...+++.++..|.|++
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 357778999999999999988642289999997 34555555432211 223334 36778888888999999
Q ss_pred Eecc
Q 006939 100 WVVD 103 (625)
Q Consensus 100 Wdv~ 103 (625)
.|++
T Consensus 241 cDmR 244 (433)
T KOG1354|consen 241 CDMR 244 (433)
T ss_pred eech
Confidence 9998
No 292
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=0.45 Score=54.20 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=55.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeE-EEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVR-CLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD 68 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~-sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~ 68 (625)
-.+||.+..+|.|-+.-+. .+-+.++..|...|+ +++|.|||+.++.|-.| +|++.|.+.+..+.
T Consensus 32 ~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 32 MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4578899999988888887 777888877777777 99999999999999998 99999999877654
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.72 E-value=5.6 Score=39.31 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=62.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCC----------eEEEEEcCCCCEEEEEeCCc-EEEEeCCCCeeEEEEe
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSG----------VRCLTFNPDGRTLLCGLHES-LKVFSWEPIRCHDAVD 71 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~----------V~sv~fsPdg~~LvSgs~Ds-IrVWdl~sg~~i~t~~ 71 (625)
+..++.+..++.|..+|+.+|+.+..+..+... +..-.+..++..+++...+. +.+ |+.+++......
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~ 200 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP 200 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec
Confidence 567788888999999999999998877554322 11222233454444444443 666 999998664322
Q ss_pred ccCCceeEEEecCCCEEEEeeCCCeEEEEecc
Q 006939 72 VGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 72 ~~~s~v~~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
......+....+..|.++..++.|..||+.
T Consensus 201 --~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 201 --ISGIYSLPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp --SS-ECECEECCCTEEEEEETTTEEEEEETT
T ss_pred --CCCccCCceeeCCEEEEEeCCCEEEEEECC
Confidence 222333223466667666689999999987
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.50 E-value=2.9 Score=41.41 Aligned_cols=100 Identities=12% Similarity=0.009 Sum_probs=63.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEE-eccC---Cc
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-DVGW---SR 76 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~-~~~~---s~ 76 (625)
++..++.++.++.+..||..+|+.+..+... ..+.......++ .++.+..+ .|..+|..+|+..... .... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPVVDGG-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEEEETT-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceeeeccc-ccccccceeeeEecccCCcceeeeecccccccccc
Confidence 4566777789999999999999998776642 222111222244 44444455 8999999999988774 2221 11
Q ss_pred eeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 77 LSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 77 v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
...... ..+..++.+..++.|..+|..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETT
T ss_pred ccccCceEecCEEEEEeccCcEEEEecC
Confidence 111111 236677777778899999877
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=91.49 E-value=0.84 Score=47.32 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=49.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEE-----EeCCCCCCeEEEEEcCCCC---EEEEEeCCcEEEEeCCCCeeEEEE
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIG-----SAGPETSGVRCLTFNPDGR---TLLCGLHESLKVFSWEPIRCHDAV 70 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~-----tl~~h~~~V~sv~fsPdg~---~LvSgs~DsIrVWdl~sg~~i~t~ 70 (625)
+...||++..|+++.|||++.-...+ +-..|.+.++.+.|++-|. ++++-+...+.|.|.++++.++.+
T Consensus 214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 214 NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 35679999999999999987543221 2245788999999998664 344444447999999988765544
No 296
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.37 E-value=3.1 Score=44.88 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=62.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEE-eccCCceeEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-DVGWSRLSDL 80 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~-~~~~s~v~~l 80 (625)
+..+..++.++.+..||+.+|+.+...... ....... ++..++.+..+ .+.++|..+|+.+... ..........
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp 316 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP 316 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence 345667788999999999999987665421 1112222 35566666666 8999999999876544 2221111111
Q ss_pred EecCCCEEEEeeCCCeEEEEecc
Q 006939 81 NVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 81 ~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+ .+..|.++..+|.|.+||..
T Consensus 317 ~i-~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 317 AV-VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred EE-ECCEEEEEeCCCEEEEEECC
Confidence 22 35577788889999999876
No 297
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.25 E-value=2.1 Score=46.21 Aligned_cols=95 Identities=16% Similarity=-0.003 Sum_probs=62.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCC-eEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCce-eE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSG-VRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRL-SD 79 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~-V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v-~~ 79 (625)
+..+..++.|+.+..+|..+|+.+......... +..... .+..++.++.+ .|.+||..+|+.+..+..+...+ ..
T Consensus 279 ~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~s 356 (377)
T TIGR03300 279 DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASP 356 (377)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccC
Confidence 556677788999999999999887655322111 122222 35677777777 99999999999988776554321 22
Q ss_pred EEecCCCEEEEeeCCCeEEEE
Q 006939 80 LNVHEGKLLGCSYNQSCVGVW 100 (625)
Q Consensus 80 l~~~dg~lL~sg~~Dg~V~vW 100 (625)
..+.+++ |..++.||.|..|
T Consensus 357 p~~~~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 357 PVVVGDG-LLVQTRDGDLYAF 376 (377)
T ss_pred CEEECCE-EEEEeCCceEEEe
Confidence 2334554 6667778887765
No 298
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.19 E-value=0.6 Score=56.07 Aligned_cols=98 Identities=16% Similarity=0.186 Sum_probs=68.2
Q ss_pred CEEEEEeCCCeEEEEECCCCeE-EEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEE
Q 006939 4 YFHFSGSADRTVKFWDLETFEL-IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 81 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~-i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~ 81 (625)
-+++-|+..|.|-..|+...-. .+.=+.-+++|.+++|+.+|+++..|..+ .|.+||...++.++.+..+..+...+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 3567777778787777653211 12222235789999999999999888877 899999999888887766555544333
Q ss_pred e----cCCCEEEEeeCCCeEEEEecc
Q 006939 82 V----HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 82 ~----~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+ .++..+.++...|. +|...
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEEE
Confidence 2 34556788888776 67655
No 299
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=91.07 E-value=1.6 Score=48.41 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=56.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-----cEEEEeCCCCeeEEE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-----SLKVFSWEPIRCHDA 69 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-----sIrVWdl~sg~~i~t 69 (625)
|||+.++.+.....+.+.|+.+|.....-+...+-|..+.|||+++|++-+-.+ .|++||...++..+.
T Consensus 411 ~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred CCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 689999998888888889999998755545556779999999999999865432 599999998887654
No 300
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=90.82 E-value=5.6 Score=36.11 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=53.7
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV 82 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~ 82 (625)
.-|+.||.|..|++|+- .+.+..+.. ++.|.+++-...+ .|+.+..+ +|-||+-. ..++.+... ..+..+.+
T Consensus 16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~-~F~Y~l~NGTVGvY~~~--~RlWRiKSK-~~~~~~~~ 88 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGG-RFAYALANGTVGVYDRS--QRLWRIKSK-NQVTSMAF 88 (111)
T ss_pred ceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCC-EEEEEecCCEEEEEeCc--ceeeeeccC-CCeEEEEE
Confidence 56889999999999974 356666654 4677777766555 45555555 88887642 122222212 22333333
Q ss_pred c-----CCCEEEEeeCCCeEE
Q 006939 83 H-----EGKLLGCSYNQSCVG 98 (625)
Q Consensus 83 ~-----dg~lL~sg~~Dg~V~ 98 (625)
. .-.-|++|..+|.|-
T Consensus 89 ~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 89 YDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EcCCCCCceEEEEEecCCeEE
Confidence 1 223689999998874
No 301
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=90.22 E-value=1.9 Score=52.67 Aligned_cols=99 Identities=16% Similarity=0.299 Sum_probs=71.3
Q ss_pred CCCEEEEEeC------CCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC--C--cEEEEeCCCCeeEEEEe
Q 006939 2 SGYFHFSGSA------DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH--E--SLKVFSWEPIRCHDAVD 71 (625)
Q Consensus 2 dG~lLASGS~------D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~--D--sIrVWdl~sg~~i~t~~ 71 (625)
||++||..+. -+.+|+|+-+ |.+..+.+.-.+--.+++|.|.|.++++.-. + .|.+|.-+ |..+..|.
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~ 297 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFT 297 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEe
Confidence 8999998875 2689999966 7776666654444568899999999987654 2 56666643 55555454
Q ss_pred cc----CCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 72 VG----WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 72 ~~----~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.. ...+..+.| .++.+|+....|. |++|-..
T Consensus 298 l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 298 LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 43 355777888 6888888877654 9999776
No 302
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=90.06 E-value=1.1 Score=50.53 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=49.4
Q ss_pred CCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeCCCC--CCe-EEEEEcCCCCEEEEEeCCcEEEEeCCCCee
Q 006939 1 MSGYFHFSGSA-----------DRTVKFWDLETFELIGSAGPET--SGV-RCLTFNPDGRTLLCGLHESLKVFSWEPIRC 66 (625)
Q Consensus 1 PdG~lLASGS~-----------D~tVkIWDL~tg~~i~tl~~h~--~~V-~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~ 66 (625)
|++++|+|-|. -..+.|||+.+|...+.+..-. ..+ .-..|+-|+.+++.-..++|.||+......
T Consensus 259 P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~l 338 (698)
T KOG2314|consen 259 PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFML 338 (698)
T ss_pred CccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceee
Confidence 67788888653 2468999999999888776522 222 245899999999877778999998776444
Q ss_pred EE
Q 006939 67 HD 68 (625)
Q Consensus 67 i~ 68 (625)
++
T Consensus 339 ld 340 (698)
T KOG2314|consen 339 LD 340 (698)
T ss_pred ec
Confidence 43
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=89.81 E-value=0.39 Score=50.55 Aligned_cols=101 Identities=20% Similarity=0.337 Sum_probs=66.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeE---EEEeCCCC-----CCeEEEEEcCCCCEE--EEEeCCcEEEEeCCCC-ee----
Q 006939 2 SGYFHFSGSADRTVKFWDLETFEL---IGSAGPET-----SGVRCLTFNPDGRTL--LCGLHESLKVFSWEPI-RC---- 66 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~---i~tl~~h~-----~~V~sv~fsPdg~~L--vSgs~DsIrVWdl~sg-~~---- 66 (625)
|.+.++++ .|-.|.+|+++.-.. |.-+++|. .-|.+..|+|..+.+ ++.+.+.|++.|++.. .|
T Consensus 183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 34455554 577899999875332 44566664 457888999975543 4666669999999732 12
Q ss_pred ------EEEE-----eccCCceeEEEe-cCCCEEEEeeCCCeEEEEeccC
Q 006939 67 ------HDAV-----DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 104 (625)
Q Consensus 67 ------i~t~-----~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~ 104 (625)
++.. ..-.+.+.++.| ++|+++++-.. .+|++||++.
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm 310 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM 310 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc
Confidence 1111 122345778888 68888877666 5899999983
No 304
>PRK02888 nitrous-oxide reductase; Validated
Probab=89.69 E-value=3.5 Score=47.82 Aligned_cols=99 Identities=14% Similarity=0.190 Sum_probs=70.0
Q ss_pred CCCEEEEEeCCCeEEEEECCC-----CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-C-cEEEEeCCCCe---------
Q 006939 2 SGYFHFSGSADRTVKFWDLET-----FELIGSAGPETSGVRCLTFNPDGRTLLCGLH-E-SLKVFSWEPIR--------- 65 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~t-----g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-D-sIrVWdl~sg~--------- 65 (625)
||++... .+.+|.+.|..+ .+.+..+. -....+.+.++|||++++.++. + ++-|.|+...+
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 5665554 356899999988 34444443 3455678899999999887665 4 89999998744
Q ss_pred ---eEEEEeccCCceeEEEecCCCEEEEeeCCCeEEEEecc
Q 006939 66 ---CHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 66 ---~i~t~~~~~s~v~~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
......++.+++...+-.+|....+-+-|+.|..|+++
T Consensus 364 ~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 364 RDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred cceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 23444556565443333677788888999999999988
No 305
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.18 E-value=1.5 Score=50.72 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=61.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe----E-----------EEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCe
Q 006939 2 SGYFHFSGSADRTVKFWDLETFE----L-----------IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR 65 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~----~-----------i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~ 65 (625)
+..++|.|+.||.+++-.+.+.. . =.+++||.+.|..+.|+....-|-+...+ -|.||-+-.|.
T Consensus 25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 25 ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS 104 (1189)
T ss_pred cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc
Confidence 35689999999999998876421 1 12578999999999999877666555555 79999986554
Q ss_pred eEEEE--eccCCceeEEEe-cCCCEEEEeeCCCeEE
Q 006939 66 CHDAV--DVGWSRLSDLNV-HEGKLLGCSYNQSCVG 98 (625)
Q Consensus 66 ~i~t~--~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~ 98 (625)
...-+ .-..+.|.++.+ .+|..+...+.||.|-
T Consensus 105 W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 105 WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVI 140 (1189)
T ss_pred HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence 32111 111222333443 3555555555555443
No 306
>PRK04043 tolB translocation protein TolB; Provisional
Probab=87.84 E-value=9.9 Score=42.26 Aligned_cols=101 Identities=12% Similarity=0.003 Sum_probs=58.5
Q ss_pred CCCCE-EEEEeC---CCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEE-EEeC--C-cEEEEeCCCCeeEEEEec
Q 006939 1 MSGYF-HFSGSA---DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLH--E-SLKVFSWEPIRCHDAVDV 72 (625)
Q Consensus 1 PdG~l-LASGS~---D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~Lv-Sgs~--D-sIrVWdl~sg~~i~t~~~ 72 (625)
|||+. ++-.+. +..|.++|+.+++...... ..+.+....|+|||+.++ +... + .|.++++.++.......
T Consensus 197 pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~- 274 (419)
T PRK04043 197 NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITN- 274 (419)
T ss_pred CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEccc-
Confidence 68873 554343 3468889998887544333 345566788999998665 3332 2 58888988776543222
Q ss_pred cCCceeEEEe-cCCCEE-EEeeCCCeEEEEecc
Q 006939 73 GWSRLSDLNV-HEGKLL-GCSYNQSCVGVWVVD 103 (625)
Q Consensus 73 ~~s~v~~l~~-~dg~lL-~sg~~Dg~V~vWdv~ 103 (625)
+........| ++|+.| +++...+.-.||-++
T Consensus 275 ~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~d 307 (419)
T PRK04043 275 YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKK 307 (419)
T ss_pred CCCccCccEECCCCCEEEEEECCCCCceEEEEE
Confidence 2221122234 788765 444344544555444
No 307
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.78 E-value=1.6 Score=50.69 Aligned_cols=115 Identities=15% Similarity=0.187 Sum_probs=69.9
Q ss_pred CEEEEEeCCCeEEEEECCCCe---EEEEeCCCCCCeEEEEEcCCCC-EEEEEeCC-cEEEEeCCCCee-EEEEeccCCce
Q 006939 4 YFHFSGSADRTVKFWDLETFE---LIGSAGPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPIRC-HDAVDVGWSRL 77 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~---~i~tl~~h~~~V~sv~fsPdg~-~LvSgs~D-sIrVWdl~sg~~-i~t~~~~~s~v 77 (625)
+++++.+.-. ..+|++.... .-..+.+|+.+|..+-|+|... .+++++-| .++.||+++-.. +..+..-....
T Consensus 83 ~wiVsts~qk-aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a 161 (1081)
T KOG0309|consen 83 YWIVSTSNQK-AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA 161 (1081)
T ss_pred eeEEecCcch-hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC
Confidence 3455555443 3478875432 2234688999999999999764 66788889 899999986433 32222111122
Q ss_pred eEEEe--cCCCEEEEeeCCCeEEEEeccCCccccccccceeEEeccCCCcc
Q 006939 78 SDLNV--HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKS 126 (625)
Q Consensus 78 ~~l~~--~dg~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gHs~~v~ 126 (625)
..+.+ -++..| ++++.+.|.+||.+ +.+..+.++.+|...+.
T Consensus 162 sqVkwnyk~p~vl-asshg~~i~vwd~r------~gs~pl~s~K~~vs~vn 205 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVL-ASSHGNDIFVWDLR------KGSTPLCSLKGHVSSVN 205 (1081)
T ss_pred ceeeecccCcchh-hhccCCceEEEecc------CCCcceEEecccceeee
Confidence 23333 244444 45666789999988 23445555666555443
No 308
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.75 E-value=1 Score=52.97 Aligned_cols=99 Identities=20% Similarity=0.201 Sum_probs=73.6
Q ss_pred CCCCEEEEEeC----CCeEEEEECCCCeEEEE--eCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHFSGSA----DRTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLASGS~----D~tVkIWDL~tg~~i~t--l~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~ 73 (625)
|.+.+||.++. .|.|.|| +++|+.-+. +..| +.++||||..-.|+.|-.- .+.||.-.+.+.+.....|
T Consensus 25 PsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th 100 (1416)
T KOG3617|consen 25 PSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETH 100 (1416)
T ss_pred CCCceeEEEEecCCCCceEEEE-ecCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCC
Confidence 55677777763 4678887 677774332 2222 4579999988777776544 7999998887777666667
Q ss_pred CCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
...+..+.| ++|..|+++..-|.|.+|..+
T Consensus 101 ~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 101 PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 777777887 899999999999999999777
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.50 E-value=1.6 Score=47.51 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=50.5
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCC-EEEEEeCC-cEEEEeCCCC
Q 006939 5 FHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPI 64 (625)
Q Consensus 5 lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~-~LvSgs~D-sIrVWdl~sg 64 (625)
++..++.+.+|+|.|+++..++.++..| ..+++++|.-|.. +++.|..+ .|.|||.+.-
T Consensus 208 Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 208 LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 7888999999999999999999998888 8899999988764 55666666 8999999753
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.21 E-value=16 Score=36.76 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=62.9
Q ss_pred CCCCEEEEEeCC--------CeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEe-CC-cEEEEeCCC--CeeE-
Q 006939 1 MSGYFHFSGSAD--------RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-HE-SLKVFSWEP--IRCH- 67 (625)
Q Consensus 1 PdG~lLASGS~D--------~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs-~D-sIrVWdl~s--g~~i- 67 (625)
|+|.+.++.... +.|..++.. ++...... .......|+|+||++.|+.+. .. .|..|++.. +...
T Consensus 95 ~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~ 172 (246)
T PF08450_consen 95 PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN 172 (246)
T ss_dssp TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred CCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceee
Confidence 578877776644 346666666 55433332 245578999999999776544 34 788888853 2111
Q ss_pred -EE-EeccCC--ceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 68 -DA-VDVGWS--RLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 68 -~t-~~~~~s--~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.. ...... ....+.+ .+|+++++....+.|.+++.+
T Consensus 173 ~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 173 RRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred eeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 22 222222 3556777 588888888888999999877
No 311
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=86.89 E-value=2.4 Score=44.82 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=63.3
Q ss_pred EEEEEeCCCeEEEEECCCCeEE--------EE--------eCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCCC-eeE
Q 006939 5 FHFSGSADRTVKFWDLETFELI--------GS--------AGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPI-RCH 67 (625)
Q Consensus 5 lLASGS~D~tVkIWDL~tg~~i--------~t--------l~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg-~~i 67 (625)
+|.=.+..|+|++-|++...+. .+ +.+-...|..+.|++.|+++++-..-++++||++.. .|+
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pi 315 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPI 315 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCc
Confidence 3445567899999999843211 01 122245678899999999999876669999999853 355
Q ss_pred EEEeccC------------Ccee---EEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 68 DAVDVGW------------SRLS---DLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 68 ~t~~~~~------------s~v~---~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.++..+- ..+. .+.| .+.+++.+|+..+...+|-++
T Consensus 316 kTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 316 KTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 5542211 1111 1222 477788888888777777644
No 312
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=86.34 E-value=2.1 Score=43.51 Aligned_cols=101 Identities=11% Similarity=0.110 Sum_probs=55.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeC-CCCCCeEEE-EEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccC-Ccee
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAG-PETSGVRCL-TFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW-SRLS 78 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~-~h~~~V~sv-~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~-s~v~ 78 (625)
+.-++.|+.|+.|.+|...-...+.-.. .-...+-++ .--.++.+..+++++ .|+.|+..+.+.......+. ....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 3457889999999998876222111110 001122221 112234466677777 89999999888776554333 2222
Q ss_pred E-EEecCCCEEEEe--eCCCeEEEEecc
Q 006939 79 D-LNVHEGKLLGCS--YNQSCVGVWVVD 103 (625)
Q Consensus 79 ~-l~~~dg~lL~sg--~~Dg~V~vWdv~ 103 (625)
. +....+.++..+ +.|..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 2 222455555555 666666666665
No 313
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=86.19 E-value=28 Score=35.07 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=58.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEc-CCCCEEEEEeCCcEEEEeCCCCeeEEEEec-----cCC
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN-PDGRTLLCGLHESLKVFSWEPIRCHDAVDV-----GWS 75 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fs-Pdg~~LvSgs~DsIrVWdl~sg~~i~t~~~-----~~s 75 (625)
+|.++++--..+.|..||..++.....-.. ....+.+. +++.++++ ..+.+.++|+.+++....... ...
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~---~~~G~~~~~~~g~l~v~-~~~~~~~~d~~~g~~~~~~~~~~~~~~~~ 86 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLP---GPNGMAFDRPDGRLYVA-DSGGIAVVDPDTGKVTVLADLPDGGVPFN 86 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESS---SEEEEEEECTTSEEEEE-ETTCEEEEETTTTEEEEEEEEETTCSCTE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecC---CCceEEEEccCCEEEEE-EcCceEEEecCCCcEEEEeeccCCCcccC
Confidence 577888888889999999988775432221 16677777 67655554 456677779998876544433 345
Q ss_pred ceeEEEe-cCCCEEEEeeC
Q 006939 76 RLSDLNV-HEGKLLGCSYN 93 (625)
Q Consensus 76 ~v~~l~~-~dg~lL~sg~~ 93 (625)
..+++.+ ++|.+.++...
T Consensus 87 ~~ND~~vd~~G~ly~t~~~ 105 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSG 105 (246)
T ss_dssp EEEEEEE-TTS-EEEEEEC
T ss_pred CCceEEEcCCCCEEEEecC
Confidence 6677877 67877766544
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.59 E-value=14 Score=39.35 Aligned_cols=51 Identities=22% Similarity=0.386 Sum_probs=42.0
Q ss_pred CCCCEEEEE-----eCCCeEEEEECC-CCeEEEEeCCCCCCeEEEEEcCCCCEEEEE
Q 006939 1 MSGYFHFSG-----SADRTVKFWDLE-TFELIGSAGPETSGVRCLTFNPDGRTLLCG 51 (625)
Q Consensus 1 PdG~lLASG-----S~D~tVkIWDL~-tg~~i~tl~~h~~~V~sv~fsPdg~~LvSg 51 (625)
|||++|.+. ...|.|-+||.. +..-+..+..|.-+-..+.+.|||..|+.+
T Consensus 60 ~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 60 PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 688888875 335679999998 677788888888888999999999887765
No 315
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=84.36 E-value=6 Score=42.62 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=62.2
Q ss_pred CCCCEEEEE---------eCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCCCeeEEEEe
Q 006939 1 MSGYFHFSG---------SADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVD 71 (625)
Q Consensus 1 PdG~lLASG---------S~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~i~t~~ 71 (625)
|||++++.. +..+...|||+++++....... ...+....|+|+|++++-.....|.+++..++...+.-.
T Consensus 2 ~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~ 80 (353)
T PF00930_consen 2 PDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT 80 (353)
T ss_dssp TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES
T ss_pred CCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecCceEEEECCCCCeEEecc
Confidence 677777663 2345688899999876544333 567889999999999887776689999987765433221
Q ss_pred cc-----------------CCceeEEEe-cCCCEEEE-eeCCCeEEEEecc
Q 006939 72 VG-----------------WSRLSDLNV-HEGKLLGC-SYNQSCVGVWVVD 103 (625)
Q Consensus 72 ~~-----------------~s~v~~l~~-~dg~lL~s-g~~Dg~V~vWdv~ 103 (625)
.+ ...-..+.+ +++++|+. ..++..|..+.+-
T Consensus 81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~ 131 (353)
T PF00930_consen 81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP 131 (353)
T ss_dssp --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence 11 111223444 67777644 3555555555443
No 316
>PRK04043 tolB translocation protein TolB; Provisional
Probab=83.93 E-value=17 Score=40.36 Aligned_cols=89 Identities=11% Similarity=-0.014 Sum_probs=52.4
Q ss_pred CCCCEEE-EEeCC--CeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC--C--cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHF-SGSAD--RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH--E--SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLA-SGS~D--~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~--D--sIrVWdl~sg~~i~t~~~~ 73 (625)
|||+.|+ +.+.+ ..|.++|+.+++.. .+..+........|+|||+.++-.+. + .|.++|+.++...+....+
T Consensus 242 PDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g 320 (419)
T PRK04043 242 KDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG 320 (419)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence 7886654 44434 45677788877643 34433333345579999986653332 2 5888899887765443222
Q ss_pred CCceeEEEe-cCCCEEEEeeC
Q 006939 74 WSRLSDLNV-HEGKLLGCSYN 93 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~~ 93 (625)
.. . ..+ ++|+.|+....
T Consensus 321 ~~-~--~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 321 KN-N--SSVSTYKNYIVYSSR 338 (419)
T ss_pred Cc-C--ceECCCCCEEEEEEc
Confidence 11 1 233 78888765544
No 317
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=83.71 E-value=3.8 Score=47.02 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCcee-EEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 34 SGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLS-DLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 34 ~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~-~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+..+.|+|.-.+++.+..+ .|-++-++ ...+.++..+...+. .++| ++|++|+.|..||+|++.|+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 457788999998888887776 56666655 455555554444444 6777 899999999999999999998
No 318
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=83.02 E-value=41 Score=35.38 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=65.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCC--CeEEEEeCCCC---CCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEe---
Q 006939 1 MSGYFHFSGSADRTVKFWDLET--FELIGSAGPET---SGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVD--- 71 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~t--g~~i~tl~~h~---~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~--- 71 (625)
.||++||.- .|..|-|-..++ ..+++...... ..-+.++|+||+.+|+.+... +|+|||+....+...-.
T Consensus 7 ~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~ 85 (282)
T PF15492_consen 7 SDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMS 85 (282)
T ss_pred CCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccc
Confidence 367777664 566777765443 12233333222 346899999999999877666 99999998654432111
Q ss_pred --cc-CCceeEEEecC-------CCEEEEeeCCCeEEEEeccCCccccccccceeEEecc
Q 006939 72 --VG-WSRLSDLNVHE-------GKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGL 121 (625)
Q Consensus 72 --~~-~s~v~~l~~~d-------g~lL~sg~~Dg~V~vWdv~~~~~~~~~~~~i~~l~gH 121 (625)
.. ...+..+.|.+ ..-|++-...|.++-|-+...+...|.......+..|
T Consensus 86 ~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~ 145 (282)
T PF15492_consen 86 FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH 145 (282)
T ss_pred cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc
Confidence 00 12234444411 1134444555777777665444444443333333333
No 319
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=82.93 E-value=7.2 Score=45.88 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=69.2
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCC-----------C-EEEEEeCC-cEEEEeCCCCeeEEEE
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG-----------R-TLLCGLHE-SLKVFSWEPIRCHDAV 70 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg-----------~-~LvSgs~D-sIrVWdl~sg~~i~t~ 70 (625)
-+||=|+ ...|.+-|..+-+.|..++.|...|..|.|.|-. . .++++... .|.+||...+..+..+
T Consensus 27 GLiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l 105 (1062)
T KOG1912|consen 27 GLIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL 105 (1062)
T ss_pred ceEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh
Confidence 3555555 3468888999999999999999999999998642 1 23344333 7999999887776666
Q ss_pred eccCCceeEEEe----cCC-CEEEEeeCCCeEEEEecc
Q 006939 71 DVGWSRLSDLNV----HEG-KLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 71 ~~~~s~v~~l~~----~dg-~lL~sg~~Dg~V~vWdv~ 103 (625)
..+-..+.++++ ++. .+|+.-...+++.+|+.+
T Consensus 106 ~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd 143 (1062)
T KOG1912|consen 106 SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD 143 (1062)
T ss_pred cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence 666666777776 333 234444444688899766
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=82.02 E-value=13 Score=40.45 Aligned_cols=95 Identities=15% Similarity=-0.065 Sum_probs=51.5
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCC-CCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCcee-EE
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPET-SGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLS-DL 80 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~-~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~-~l 80 (625)
..+..++.|+.+..+|..+|+.+.....-. ....+..+ .+..++.+..+ .|.++|..+|+.+.........+. .-
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P 372 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP 372 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC
Confidence 344555667777777777776544322111 11111111 13355556666 888899999988776654322222 11
Q ss_pred EecCCCEEEEeeCCCeEEEEe
Q 006939 81 NVHEGKLLGCSYNQSCVGVWV 101 (625)
Q Consensus 81 ~~~dg~lL~sg~~Dg~V~vWd 101 (625)
.+.++ .|..+..+|.|..+.
T Consensus 373 ~~~~~-~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 373 VVADD-KLLIQARDGTVYAIT 392 (394)
T ss_pred EEECC-EEEEEeCCceEEEEe
Confidence 22344 566667788877664
No 321
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=81.74 E-value=14 Score=33.58 Aligned_cols=65 Identities=22% Similarity=0.353 Sum_probs=41.9
Q ss_pred eEEEEEcC---CC-CEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEecCCCEEEEeeCCCeEEEEecc
Q 006939 36 VRCLTFNP---DG-RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 36 V~sv~fsP---dg-~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|+++++.. || .-|+.|+.| .||||+-+ ..+..+. ....+..+..-.+..++.+..+|+|.+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCc
Confidence 45555443 33 468899999 99999854 2332222 2244555554445678889999999998754
No 322
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=81.35 E-value=19 Score=42.15 Aligned_cols=92 Identities=23% Similarity=0.236 Sum_probs=56.7
Q ss_pred eCCCeEEEEECCCCeEEEEeC-CCCCCeEEEEEc--CCCCEEEEEeCC-cEEEEeCC------------CCeeEEEEecc
Q 006939 10 SADRTVKFWDLETFELIGSAG-PETSGVRCLTFN--PDGRTLLCGLHE-SLKVFSWE------------PIRCHDAVDVG 73 (625)
Q Consensus 10 S~D~tVkIWDL~tg~~i~tl~-~h~~~V~sv~fs--Pdg~~LvSgs~D-sIrVWdl~------------sg~~i~t~~~~ 73 (625)
+.-.++.|||...+.+...-. .+.+.|..+.|. |||..+++-|-+ .|.+|.-. .-+.++.-...
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T 127 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHT 127 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCC
Confidence 344578999999887543221 345789999885 578877766655 78877531 11122222333
Q ss_pred CCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 74 WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+|.+..+ .+|.+++.+++ .+.|+|--
T Consensus 128 ~h~Igds~Wl~~G~LvV~sGN--qlfv~dk~ 156 (631)
T PF12234_consen 128 PHPIGDSIWLKDGTLVVGSGN--QLFVFDKW 156 (631)
T ss_pred CCCccceeEecCCeEEEEeCC--EEEEECCC
Confidence 356777777 56666555444 68888654
No 323
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=81.14 E-value=3.2 Score=49.60 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=45.3
Q ss_pred CEEEEEeCCCeEEEEECCCCeE-EEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeC
Q 006939 4 YFHFSGSADRTVKFWDLETFEL-IGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 61 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~-i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl 61 (625)
-+||.||.+|.||+||- .|.- ...+.+-..+|..|..+.||+|++..+...|.+++.
T Consensus 589 G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 589 GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 36799999999999994 3332 334566778999999999999999888777777775
No 324
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=80.93 E-value=4.3 Score=45.44 Aligned_cols=98 Identities=16% Similarity=0.103 Sum_probs=64.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC----------------cEEEEeCCCC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----------------SLKVFSWEPI 64 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D----------------sIrVWdl~sg 64 (625)
|.|.+|++...- .|.+|+-..+..+..+. ...|+.+.|+|.+.+|.+-... .++|||..+|
T Consensus 42 P~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg 118 (561)
T COG5354 42 PLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG 118 (561)
T ss_pred Ccchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc
Confidence 678888887655 48999877666444443 3779999999999999986432 4899999999
Q ss_pred eeEEEEeccCCc--ee-EEEe-cCCCEEEEeeCCCeEEEEec
Q 006939 65 RCHDAVDVGWSR--LS-DLNV-HEGKLLGCSYNQSCVGVWVV 102 (625)
Q Consensus 65 ~~i~t~~~~~s~--v~-~l~~-~dg~lL~sg~~Dg~V~vWdv 102 (625)
..+..+...-.. .. .+.| .++++++-- -...+.|+++
T Consensus 119 ~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 119 MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec
Confidence 887766432111 11 2333 455555333 2246888885
No 325
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.67 E-value=4.7 Score=45.25 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=39.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCC
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 62 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~ 62 (625)
|.+|+..+.+ .|.+||+++++.++.+... +|..|.|+++|.+++-.+.+++.+++.+
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEec
Confidence 6667776655 7999999999999999854 4899999999999888877777776654
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.35 E-value=11 Score=44.88 Aligned_cols=103 Identities=21% Similarity=0.244 Sum_probs=67.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCC-CEEEEEeCC------cEEEEeCCCC------eeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG-RTLLCGLHE------SLKVFSWEPI------RCH 67 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg-~~LvSgs~D------sIrVWdl~sg------~~i 67 (625)
+++..++-|+.||.|-+.+- ..+.++.++.|...+....|.-++ .+|++-+.| .++||+++.. .|+
T Consensus 33 s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~ 111 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCL 111 (933)
T ss_pred CCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCccee
Confidence 45778899999998877653 356667787777663333344444 577765544 3899999642 344
Q ss_pred ---EEEe----ccCCceeEEEe-cCCCEEEEeeCCCeEEEEeccC
Q 006939 68 ---DAVD----VGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 104 (625)
Q Consensus 68 ---~t~~----~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~ 104 (625)
+.+. ....++..+.+ .+-+.++||..+|.|..+.=++
T Consensus 112 ~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 112 YEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred eeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc
Confidence 3332 12345566666 4677899999999999886553
No 327
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=80.28 E-value=35 Score=32.36 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHH-hcCCchhHHHHHHHHHhcc------cccchhhHHhhHHHHHHhhccCCchhHHH
Q 006939 475 RLAKLQAVYRYWERNDVKGAISAMQ-KMADHTVLADVMSIVVEKI------EIVTLDICSCLLPLLTGLLESDMDRHLSI 547 (625)
Q Consensus 475 R~~~L~~vr~~W~~~dik~ai~~~~-~~~D~~VlvD~L~~l~~~~------~~~tLd~c~~lLP~i~~LL~Sk~E~~v~~ 547 (625)
+..+|+..-.+-.+-..+.|++++. +..++.+++=+|..|..|. .--+=..+.-+|-++..-+. .-+|..+
T Consensus 18 ~~~kl~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL~~R~~L~~AL~~Rde~~L~piL~Fl~k~i~--~pr~~~~ 95 (148)
T PF09384_consen 18 KKKKLSKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLEELIRRGALRAALAGRDEESLEPILKFLIKNIT--DPRYTRI 95 (148)
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHHHHccHHHHHHHhCCHHHHHHHHHHHHHhCC--CcccHHH
Confidence 5566666666777778999999999 8889999999998887766 22333445556666666664 4689999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006939 548 SLDILLKLVRTFGSMIYS 565 (625)
Q Consensus 548 al~~l~~i~~~F~~~I~~ 565 (625)
-+++...|+..|++.|-.
T Consensus 96 l~~v~~~ildiY~~~~~~ 113 (148)
T PF09384_consen 96 LVDVANIILDIYSPVIGQ 113 (148)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999987744
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=79.83 E-value=6.2 Score=48.42 Aligned_cols=100 Identities=16% Similarity=0.284 Sum_probs=63.8
Q ss_pred CCCEEEE-----EeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC---C-cEEEEeCCCCeeEEEEec
Q 006939 2 SGYFHFS-----GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH---E-SLKVFSWEPIRCHDAVDV 72 (625)
Q Consensus 2 dG~lLAS-----GS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~---D-sIrVWdl~sg~~i~t~~~ 72 (625)
||++||. ....+++++||-+ |.+-.+-....+-=.++.|-|.|.++++-.. | .|.+|.-+ |..+..+..
T Consensus 206 Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l 283 (1265)
T KOG1920|consen 206 DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVL 283 (1265)
T ss_pred CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-Ccccccccc
Confidence 7888888 3333899999987 6554444444444468999999999886432 3 58888754 333333322
Q ss_pred ----cCCceeEEEe-cCCCEEEE---eeCCCeEEEEecc
Q 006939 73 ----GWSRLSDLNV-HEGKLLGC---SYNQSCVGVWVVD 103 (625)
Q Consensus 73 ----~~s~v~~l~~-~dg~lL~s---g~~Dg~V~vWdv~ 103 (625)
....|..+.| .++.+|+. ......|++|-+.
T Consensus 284 ~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 284 PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 2233667777 46666655 4454559999776
No 329
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.60 E-value=1.3 Score=48.77 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=64.6
Q ss_pred CEEEEEeCCCeEEEEECCC---CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-C-cEEEEeCCCCeeEEEEeccCCc-e
Q 006939 4 YFHFSGSADRTVKFWDLET---FELIGSAGPETSGVRCLTFNPDGRTLLCGLH-E-SLKVFSWEPIRCHDAVDVGWSR-L 77 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~t---g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-D-sIrVWdl~sg~~i~t~~~~~s~-v 77 (625)
.++.+++.|+.+++|--.. -+.+..+..|...+.+++.+-+|.++.|.+. | .+++||++..-.+..+....-+ .
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~ 100 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF 100 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence 5789999999999996432 1334455677788888888999988888777 8 9999999865443322221111 0
Q ss_pred eEEEecCC----CEEEEeeCCCeEEEEecc
Q 006939 78 SDLNVHEG----KLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 78 ~~l~~~dg----~lL~sg~~Dg~V~vWdv~ 103 (625)
..+....| .+.++...++.+.++|-.
T Consensus 101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~ 130 (558)
T KOG0882|consen 101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGF 130 (558)
T ss_pred eEEecCCCCeeeeEEeecccCCCcEEECCc
Confidence 11111222 233455667788888766
No 330
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.05 E-value=17 Score=37.94 Aligned_cols=70 Identities=21% Similarity=0.262 Sum_probs=52.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC-CeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEecc
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETS-GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~-~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~ 73 (625)
|.+++-|+..+.+.+-+..+|+.+..+..... .++. ...+++..+..|++| +....|..+..|+.....+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a-~~d~~~glIycgshd~~~yalD~~~~~cVykskcg 134 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA-QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG 134 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccce-EEcCCCceEEEecCCCcEEEecccccceEEecccC
Confidence 56788899999999999999977666544322 3333 346789999999999 9999999988887665443
No 331
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.02 E-value=13 Score=37.54 Aligned_cols=62 Identities=8% Similarity=0.195 Sum_probs=46.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe-------C-------CCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCC
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSA-------G-------PETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 63 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl-------~-------~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~s 63 (625)
++.+|+.-..+|.+++||+.+++++..- . .....|..+.++.+|.-+++-+.+...+|+..-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 5778889999999999999998875432 2 244667788888888777776666666776543
No 332
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=78.64 E-value=15 Score=32.45 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=36.1
Q ss_pred cchhhHHhhHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 006939 521 VTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSA 566 (625)
Q Consensus 521 ~tLd~c~~lLP~i~~LL~Sk~E~~v~~al~~l~~i~~~F~~~I~~~ 566 (625)
+.......||-+|...++-..-.|+...|.|++.|++..|..|...
T Consensus 25 Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~ 70 (110)
T PF04003_consen 25 LPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSS 70 (110)
T ss_pred CCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 3445556677777777774455699999999999999999999886
No 333
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=78.26 E-value=23 Score=43.54 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=64.4
Q ss_pred CCCCEEEEEeC---CCeEEEEEC---CCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCCCeeEEEEecc-
Q 006939 1 MSGYFHFSGSA---DRTVKFWDL---ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVG- 73 (625)
Q Consensus 1 PdG~lLASGS~---D~tVkIWDL---~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~i~t~~~~- 73 (625)
|.|.++|+.-. ...|-+|.- +-|+....+......|..+.|++|+..|+....|.|.+|...+..........
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~ 345 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRF 345 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEc
Confidence 78999999864 345666652 22333333334567899999999999999888789999987665432111111
Q ss_pred --CCceeEEEec--CCCEEEEeeCCCeEEEEecc
Q 006939 74 --WSRLSDLNVH--EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 74 --~s~v~~l~~~--dg~lL~sg~~Dg~V~vWdv~ 103 (625)
...+..+.|+ +...|.....++.+..+++.
T Consensus 346 ~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 346 SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 1112235553 45556666665667666655
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=77.13 E-value=8.5 Score=44.77 Aligned_cols=103 Identities=18% Similarity=0.094 Sum_probs=73.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEE-eCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCee--EEEE---e-cc
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC--HDAV---D-VG 73 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~t-l~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~--i~t~---~-~~ 73 (625)
.+++++-|+.-|.|.+|+-..++.... ..+-.+.+..+..+++..+++.|+.. .|.||.++.+.. ...+ + .|
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 578999999999999999887765433 33333445566778888777777777 788888765321 1111 1 24
Q ss_pred CCceeEEEe-cCCCEEEEeeCCCeEEEEeccC
Q 006939 74 WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 104 (625)
Q Consensus 74 ~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~ 104 (625)
...|.++.| .+++.+.+|.+.|.|..--++.
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEech
Confidence 566788888 7999999999999988876663
No 335
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.57 E-value=3.2 Score=49.26 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=65.1
Q ss_pred CCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCC--CeE
Q 006939 22 TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQ--SCV 97 (625)
Q Consensus 22 tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~D--g~V 97 (625)
.+..++++..|+...+|++|+-+.+.|+.|+.. .|++|++.+|.......+|.+.+..+.. -+|.++++++.- -..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 355667788899999999999999999999887 9999999999988888888888877775 366655444332 257
Q ss_pred EEEecc
Q 006939 98 GVWVVD 103 (625)
Q Consensus 98 ~vWdv~ 103 (625)
.+|++.
T Consensus 1170 aLW~~~ 1175 (1516)
T KOG1832|consen 1170 ALWDAS 1175 (1516)
T ss_pred HHhccc
Confidence 889887
No 336
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=75.14 E-value=10 Score=42.59 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=58.1
Q ss_pred EEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCC
Q 006939 16 KFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQ 94 (625)
Q Consensus 16 kIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~D 94 (625)
.+|.-.+...-..+.....++..++|+|.|.+|++.....|.+|+...+-.+..+ ....+..+.| +++++|.+=...
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~--~~~~V~~~~fSP~~kYL~tw~~~ 92 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF--RHPDVKYLDFSPNEKYLVTWSRE 92 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccceEEccccchhheeee--ecCCceecccCcccceeeeeccC
Confidence 4576554443334444677899999999999999876668999997654322222 2234566666 788888775444
Q ss_pred C---------------eEEEEecc
Q 006939 95 S---------------CVGVWVVD 103 (625)
Q Consensus 95 g---------------~V~vWdv~ 103 (625)
. .+.+||..
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~ 116 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIA 116 (561)
T ss_pred CccChhhccCCccccCceeEEecc
Confidence 3 48888877
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=74.51 E-value=17 Score=42.30 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=61.7
Q ss_pred CCCCEEEEE-eCCCeEEEEECCCCeE------------EEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC---
Q 006939 1 MSGYFHFSG-SADRTVKFWDLETFEL------------IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP--- 63 (625)
Q Consensus 1 PdG~lLASG-S~D~tVkIWDL~tg~~------------i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s--- 63 (625)
|||++++.+ ..+.+|.+.|+.+.+. ....+. ..+-.-..|.++|..+.|-.-| .|..|++..
T Consensus 330 PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~ 408 (635)
T PRK02888 330 PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIR 408 (635)
T ss_pred CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHH
Confidence 788887555 4699999999987552 333332 2344567899999877777778 899999875
Q ss_pred -------CeeEEEEeccCCceeEEE------ecCCCEEEEeeCC
Q 006939 64 -------IRCHDAVDVGWSRLSDLN------VHEGKLLGCSYNQ 94 (625)
Q Consensus 64 -------g~~i~t~~~~~s~v~~l~------~~dg~lL~sg~~D 94 (625)
...++.+.++..+-.-.. -++|++|++...-
T Consensus 409 ~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~ 452 (635)
T PRK02888 409 AYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKF 452 (635)
T ss_pred HhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcccc
Confidence 234555666655432222 2578888776553
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=72.78 E-value=29 Score=41.76 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=62.6
Q ss_pred EEEEeCCCeEEEEECCCCe--EEEE-eCC--CCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEE-EEeccCCcee
Q 006939 6 HFSGSADRTVKFWDLETFE--LIGS-AGP--ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD-AVDVGWSRLS 78 (625)
Q Consensus 6 LASGS~D~tVkIWDL~tg~--~i~t-l~~--h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~-t~~~~~s~v~ 78 (625)
-+.|-.+..+..||.+... ++.. ... ......|++-+.+| +|+.|+.+ .||+||-. |+... .+.+-..+|.
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~ 622 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPII 622 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCee
Confidence 4566778889999988632 3311 111 23456777777777 55666666 99999943 33333 3344457888
Q ss_pred EEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 79 DLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 79 ~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+.+ .+|++|++.+. ..+.+++..
T Consensus 623 ~iDvt~DGkwilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 623 GIDVTADGKWILATCK-TYLLLIDTL 647 (794)
T ss_pred EEEecCCCcEEEEeec-ceEEEEEEe
Confidence 8887 79999988777 477787765
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.03 E-value=38 Score=40.26 Aligned_cols=91 Identities=9% Similarity=-0.041 Sum_probs=61.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 81 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~ 81 (625)
+++|+-|.-+|.|.+++.. |.. .+...|... .-+|.+++||+.| ++.|..+-+.....+++.+ .++..++
T Consensus 49 ~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksia 119 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIA 119 (846)
T ss_pred cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEE
Confidence 5788889999999998865 433 444444332 5579999999999 8988888776655444433 2344555
Q ss_pred e-c-----CCCEEEEeeCCCeEEEEecc
Q 006939 82 V-H-----EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 82 ~-~-----dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+ | ..+.+++|+.-| +.++.-+
T Consensus 120 l~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 120 LHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred eccchhhhhhhheeecCcce-EEEehhh
Confidence 5 2 256677888877 6666544
No 340
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.68 E-value=62 Score=34.63 Aligned_cols=89 Identities=17% Similarity=0.081 Sum_probs=56.9
Q ss_pred CCEEEEEeCCCe-EEEEECCCCeEEEEeCCCCCCeE--EEEEcCCCCEEEEEeCC------cEEEEeCC-CCeeEEEEec
Q 006939 3 GYFHFSGSADRT-VKFWDLETFELIGSAGPETSGVR--CLTFNPDGRTLLCGLHE------SLKVFSWE-PIRCHDAVDV 72 (625)
Q Consensus 3 G~lLASGS~D~t-VkIWDL~tg~~i~tl~~h~~~V~--sv~fsPdg~~LvSgs~D------sIrVWdl~-sg~~i~t~~~ 72 (625)
+..++-+-.-++ ..+||..+++.+..+....+.-+ --.|++||++|++.-.| .|-|||.. ..+.+..+..
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s 96 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS 96 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC
Confidence 445555555554 56799999998776543222211 23699999999987543 49999998 5555666654
Q ss_pred cCCceeEEEe-cCCCEEEEe
Q 006939 73 GWSRLSDLNV-HEGKLLGCS 91 (625)
Q Consensus 73 ~~s~v~~l~~-~dg~lL~sg 91 (625)
+.-.-.++.+ ++|..|+.+
T Consensus 97 ~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 97 HGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred CCcChhhEEEcCCCCEEEEE
Confidence 4433445554 678677665
No 341
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=71.66 E-value=19 Score=40.13 Aligned_cols=101 Identities=18% Similarity=0.268 Sum_probs=67.1
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCeEEEEeCCCCCCeEEEEE-cCCCC---EEEEEeC-C-cEEEEeCCCCeeEEEE--ec
Q 006939 2 SGYFHFSGSA-DRTVKFWDLETFELIGSAGPETSGVRCLTF-NPDGR---TLLCGLH-E-SLKVFSWEPIRCHDAV--DV 72 (625)
Q Consensus 2 dG~lLASGS~-D~tVkIWDL~tg~~i~tl~~h~~~V~sv~f-sPdg~---~LvSgs~-D-sIrVWdl~sg~~i~t~--~~ 72 (625)
+|-++.|++. |..+|++|++....+..++-..-+ ..+.| +..|. .++.... + .+.|+|-....|.... ..
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl 142 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL 142 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence 6778899887 999999999988876444322111 12222 22331 2333333 3 7999998776664322 46
Q ss_pred cCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 73 GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 73 ~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|.++|..+.. +-+..+++....|.|.-|...
T Consensus 143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred ccCceEEEEeeccccceeeccccceeEeecCC
Confidence 7888888876 566677777778999999776
No 342
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=69.65 E-value=21 Score=25.28 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=24.0
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCeEEEEeCC
Q 006939 1 MSGYFHFSGS-ADRTVKFWDLETFELIGSAGP 31 (625)
Q Consensus 1 PdG~lLASGS-~D~tVkIWDL~tg~~i~tl~~ 31 (625)
|+|++|..+. .+++|.++|+.+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6777665554 688999999999988877654
No 343
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.62 E-value=30 Score=39.38 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=63.5
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCE-------EEEEeCC-cEEEEeCCC-Ce-eEEEEe---
Q 006939 5 FHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT-------LLCGLHE-SLKVFSWEP-IR-CHDAVD--- 71 (625)
Q Consensus 5 lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~-------LvSgs~D-sIrVWdl~s-g~-~i~t~~--- 71 (625)
+|.+|..-..++--|++.|+.+..+.-|.. |.-+.+.|+... -+.|..+ .|+=||.+. +. .+....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 445566656677789999999999988755 777778887531 1234455 888899873 22 111111
Q ss_pred -ccCCceeEEEecCCCEEEEeeCCCeEEEEecc
Q 006939 72 -VGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 72 -~~~s~v~~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.......++......+++.|+.+|.|++||--
T Consensus 427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri 459 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDRI 459 (644)
T ss_pred cccccccceeeecCCceEEEeecCCcEEeehhh
Confidence 11122334444567789999999999999863
No 344
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=65.26 E-value=11 Score=38.33 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=38.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCC-CCeEEEEEcCCCCEEEEE--eCC-cEEEEeCC
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPET-SGVRCLTFNPDGRTLLCG--LHE-SLKVFSWE 62 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~-~~V~sv~fsPdg~~LvSg--s~D-sIrVWdl~ 62 (625)
+.+..+|+.|+.|+.|+..-++.+....+|+ ..+........+.++..+ +.| .++.|+++
T Consensus 114 ~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 114 SSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 4577889999999999999888887777776 333333333333444443 444 55555554
No 345
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=64.96 E-value=22 Score=26.79 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCC---EEEEEeC-CcEEEEeCCC
Q 006939 34 SGVRCLTFNPDGR---TLLCGLH-ESLKVFSWEP 63 (625)
Q Consensus 34 ~~V~sv~fsPdg~---~LvSgs~-DsIrVWdl~s 63 (625)
+.|+++.|+|... +|+-+-+ +.+.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998543 5554333 3899999985
No 346
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=64.80 E-value=20 Score=27.34 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-cEEEEeC
Q 006939 33 TSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 61 (625)
Q Consensus 33 ~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl 61 (625)
...|.++.|+|...+++.|..+ .|.||.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 3568999999999999999988 8999887
No 347
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.84 E-value=94 Score=37.42 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=66.4
Q ss_pred CCEEEEEeCCCeEEEEECC----CCeEEEEeCCCCCCeEEEEEcCCCCE-EEEEeCCcEEEEeCCCCe-eEEEEeccCCc
Q 006939 3 GYFHFSGSADRTVKFWDLE----TFELIGSAGPETSGVRCLTFNPDGRT-LLCGLHESLKVFSWEPIR-CHDAVDVGWSR 76 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~----tg~~i~tl~~h~~~V~sv~fsPdg~~-LvSgs~DsIrVWdl~sg~-~i~t~~~~~s~ 76 (625)
-+.+|.|-.+|.|..+.-. .|.-......-.++|+.+.|..|+.. ++.+....|.+|.+.... .+..++.+...
T Consensus 137 l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~ 216 (933)
T KOG2114|consen 137 LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGIS 216 (933)
T ss_pred ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCcc
Confidence 3578899999999887421 11111112223478999999998876 566666688999887322 24556666666
Q ss_pred eeEEEecCCCE-EEEeeCCCeEEEEecc
Q 006939 77 LSDLNVHEGKL-LGCSYNQSCVGVWVVD 103 (625)
Q Consensus 77 v~~l~~~dg~l-L~sg~~Dg~V~vWdv~ 103 (625)
+.+..+.++.. ++|++. ..+.+|+.+
T Consensus 217 lnCss~~~~t~qfIca~~-e~l~fY~sd 243 (933)
T KOG2114|consen 217 LNCSSFSDGTYQFICAGS-EFLYFYDSD 243 (933)
T ss_pred ceeeecCCCCccEEEecC-ceEEEEcCC
Confidence 77777755555 666666 479999988
No 348
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=63.62 E-value=48 Score=36.08 Aligned_cols=98 Identities=15% Similarity=0.028 Sum_probs=58.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC----------CeE-EEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEE
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETS----------GVR-CLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV 70 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~----------~V~-sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~ 70 (625)
+..++.++.++.+.-+|..+|+.+........ .+. .+.. ++..++.++.+ .+..+|.++|+.....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 34566677788899999999998766533210 000 0111 23445555555 8999999999987765
Q ss_pred eccCCceeEEEecCCCEEEEeeCCCeEEEEecc
Q 006939 71 DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 71 ~~~~s~v~~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
...........+.++. ++.+..++.|..+|..
T Consensus 147 ~~~~~~~ssP~v~~~~-v~v~~~~g~l~ald~~ 178 (394)
T PRK11138 147 KVAGEALSRPVVSDGL-VLVHTSNGMLQALNES 178 (394)
T ss_pred cCCCceecCCEEECCE-EEEECCCCEEEEEEcc
Confidence 4432211111223444 4455667788888776
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=62.93 E-value=98 Score=32.61 Aligned_cols=98 Identities=11% Similarity=0.045 Sum_probs=57.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCe-EEEEeCCC-CCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC-CeeEEEEe--ccCCc
Q 006939 3 GYFHFSGSADRTVKFWDLETFE-LIGSAGPE-TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP-IRCHDAVD--VGWSR 76 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~-~i~tl~~h-~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s-g~~i~t~~--~~~s~ 76 (625)
|+++++. ...|.+|++...+ +......+ ...+.++... +.+++.|..- .+.++.+.. ...+..+. .....
T Consensus 99 ~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 99 GRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW 174 (321)
T ss_dssp TEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred CEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence 4444433 4689999998777 54433222 2255555543 5677777654 777775543 23222222 22333
Q ss_pred eeEEEe-cCCCEEEEeeCCCeEEEEeccC
Q 006939 77 LSDLNV-HEGKLLGCSYNQSCVGVWVVDI 104 (625)
Q Consensus 77 v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~ 104 (625)
+..+.+ .++..++++..+|.+.++....
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 455555 3556899999999999998873
No 350
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=60.00 E-value=3.4 Score=47.46 Aligned_cols=90 Identities=17% Similarity=0.380 Sum_probs=54.8
Q ss_pred CCCeEEEEECCCC--eEEE--EeC-CCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-c
Q 006939 11 ADRTVKFWDLETF--ELIG--SAG-PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-H 83 (625)
Q Consensus 11 ~D~tVkIWDL~tg--~~i~--tl~-~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~ 83 (625)
.|..++|||+.++ .... .+. +...+..+++|-.+.+++++|..- .++++|++.. +.....+....+..+.+ +
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp 205 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDP 205 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecC
Confidence 4667999999876 2111 122 234566789999888999999887 8999998721 11111111112222222 2
Q ss_pred -CCCEEEEeeCCCeEEEEec
Q 006939 84 -EGKLLGCSYNQSCVGVWVV 102 (625)
Q Consensus 84 -dg~lL~sg~~Dg~V~vWdv 102 (625)
.+.++ |++.|+.|.+||.
T Consensus 206 ~~~nY~-cs~~dg~iAiwD~ 224 (783)
T KOG1008|consen 206 FSPNYF-CSNSDGDIAIWDT 224 (783)
T ss_pred CCCCce-eccccCceeeccc
Confidence 44455 5566899999994
No 351
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=59.72 E-value=2.7 Score=48.30 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=61.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcC-CCCEEEEEeCCcEEEEe-CCCCee-EEEEecc----C
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP-DGRTLLCGLHESLKVFS-WEPIRC-HDAVDVG----W 74 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsP-dg~~LvSgs~DsIrVWd-l~sg~~-i~t~~~~----~ 74 (625)
|.+++.+|..-+.++++|++. .+.......+..|..+...| .+.++.+-.++.|.+|| ....+. +.++... .
T Consensus 165 d~klvlaGm~sr~~~ifdlRq-s~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~ 243 (783)
T KOG1008|consen 165 DTKLVLAGMTSRSVHIFDLRQ-SLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKP 243 (783)
T ss_pred Ccchhhcccccchhhhhhhhh-hhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcc
Confidence 567888898888999999872 22222222334455666777 56677666655999999 433221 1111000 1
Q ss_pred CceeEEEe---cCCCEEEEeeCCCeEEEEecc
Q 006939 75 SRLSDLNV---HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 75 s~v~~l~~---~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+..+++ ..|.++++.-+.++|+.||+.
T Consensus 244 ~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 244 KQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 12344444 267777777788899999887
No 352
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=59.18 E-value=1.1e+02 Score=34.50 Aligned_cols=100 Identities=21% Similarity=0.328 Sum_probs=55.2
Q ss_pred CCCCEEEEE--eCC----CeEEEEECCCCeEEEEeCCCC---CCeEEEEEcCCCCEEEEEe-------------------
Q 006939 1 MSGYFHFSG--SAD----RTVKFWDLETFELIGSAGPET---SGVRCLTFNPDGRTLLCGL------------------- 52 (625)
Q Consensus 1 PdG~lLASG--S~D----~tVkIWDL~tg~~i~tl~~h~---~~V~sv~fsPdg~~LvSgs------------------- 52 (625)
|+|.+++|+ ..+ +-+-+.|-++++.+..++... ..-+.+.|+|-.+.++|..
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 578777774 333 346788999999988876532 2346778889888888752
Q ss_pred -CC-cEEEEeCCCCeeEEEEeccCCc--eeEEEe-cC----CCEEEEeeCCCeEEEE
Q 006939 53 -HE-SLKVFSWEPIRCHDAVDVGWSR--LSDLNV-HE----GKLLGCSYNQSCVGVW 100 (625)
Q Consensus 53 -~D-sIrVWdl~sg~~i~t~~~~~s~--v~~l~~-~d----g~lL~sg~~Dg~V~vW 100 (625)
.+ +|.||||...+.+++++++-.. ...+.| |+ ..++.|+...+..++|
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~ 275 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFY 275 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEE
Confidence 24 6999999999999999887433 345555 33 2345666553333333
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=59.15 E-value=1.2e+02 Score=30.95 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=42.4
Q ss_pred CCCEEEEEeCCCeEEEEECC-CCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCC
Q 006939 2 SGYFHFSGSADRTVKFWDLE-TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 63 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~-tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~s 63 (625)
.++.|+.|..+| +.+|++. ......... ...|..+...++-+.++.-++..+.+|++..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLSDGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEcCCccEEEEchh
Confidence 478899999998 8888883 233332222 2339999999988877776656999999864
No 354
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=59.13 E-value=11 Score=44.82 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=50.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCC
Q 006939 3 GYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 62 (625)
Q Consensus 3 G~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~ 62 (625)
..+||.|=..|.+.+|...+.+.-.....|..++.-+.|+++|..++++..= .+.+|.+.
T Consensus 71 ~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 71 EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 4467788888899999988877766778899999999999999999998764 78888765
No 355
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=58.81 E-value=18 Score=43.55 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=46.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-----CeEEEEeCCCCC-CeEEEEEcCC-------C--CEEEEEeC-C-cEEEEeCCC
Q 006939 1 MSGYFHFSGSADRTVKFWDLET-----FELIGSAGPETS-GVRCLTFNPD-------G--RTLLCGLH-E-SLKVFSWEP 63 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~t-----g~~i~tl~~h~~-~V~sv~fsPd-------g--~~LvSgs~-D-sIrVWdl~s 63 (625)
|||..||.++.||.+++|-+.- -.|++.++.|.+ +-.|..|+.. + .+++++.+ + .+++|.-..
T Consensus 245 pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 245 PDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred CCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 7999999999999999998643 235667788874 3334444422 2 23445554 3 699999888
Q ss_pred CeeE
Q 006939 64 IRCH 67 (625)
Q Consensus 64 g~~i 67 (625)
.+|+
T Consensus 325 w~Cl 328 (1283)
T KOG1916|consen 325 WQCL 328 (1283)
T ss_pred hhhh
Confidence 7886
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=58.59 E-value=43 Score=37.65 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=37.3
Q ss_pred CCEEEEEeCCcEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 45 GRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 45 g~~LvSgs~DsIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|.+|+..+.+.|.+|||++++.+..+.+. .|..+.| +++.+++..+.+ .+.+++.+
T Consensus 117 G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 77777777678999999999998887654 3667777 677888777665 67887766
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=58.24 E-value=87 Score=34.16 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=50.2
Q ss_pred CCCCEEEEE-eC----CCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-----------C-cEEEEeCCC
Q 006939 1 MSGYFHFSG-SA----DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-----------E-SLKVFSWEP 63 (625)
Q Consensus 1 PdG~lLASG-S~----D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-----------D-sIrVWdl~s 63 (625)
|||+++|-+ +. ..+++++|+++|+.+...-.... ...+.|.+|+..|+-... . .|+.|.+.+
T Consensus 133 pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt 211 (414)
T PF02897_consen 133 PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT 211 (414)
T ss_dssp TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS
T ss_pred CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC
Confidence 688888754 22 24699999999987653211111 123999999887765432 2 377777765
Q ss_pred CeeE--EEEeccCCc--eeEEEe-cCCCEEEE
Q 006939 64 IRCH--DAVDVGWSR--LSDLNV-HEGKLLGC 90 (625)
Q Consensus 64 g~~i--~t~~~~~s~--v~~l~~-~dg~lL~s 90 (625)
.... .++...-.. ...+.. .++++|+.
T Consensus 212 ~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i 243 (414)
T PF02897_consen 212 PQSEDELVFEEPDEPFWFVSVSRSKDGRYLFI 243 (414)
T ss_dssp -GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEE
T ss_pred ChHhCeeEEeecCCCcEEEEEEecCcccEEEE
Confidence 5432 233221111 223333 67787643
No 358
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.20 E-value=1.5e+02 Score=31.14 Aligned_cols=98 Identities=14% Similarity=0.033 Sum_probs=64.0
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEe-ccCCceeEEE
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVD-VGWSRLSDLN 81 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~-~~~s~v~~l~ 81 (625)
.+++-||..+.+.--|..+|+++..-.. ...+-+-+.- -|.+++-|... .+.+.+..+|..++.+. .+..++....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 4566778888888888888887644211 1122222111 46778888877 89999999996655443 2222333333
Q ss_pred ecCCCEEEEeeCCCeEEEEecc
Q 006939 82 VHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 82 ~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
-.++.++-||++|+..+..|..
T Consensus 102 d~~~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred cCCCceEEEecCCCcEEEeccc
Confidence 3689999999999999888776
No 359
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=56.99 E-value=1.1e+02 Score=32.65 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=51.1
Q ss_pred EEEECC-CCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC--cEEEEeCCC--Cee---E-EE-EeccCCceeEEEe-cC
Q 006939 16 KFWDLE-TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEP--IRC---H-DA-VDVGWSRLSDLNV-HE 84 (625)
Q Consensus 16 kIWDL~-tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D--sIrVWdl~s--g~~---i-~t-~~~~~s~v~~l~~-~d 84 (625)
.+|-+. .+..+..+..+-..-..|+|+||++.++.+... .|.-|++.. +.. . .. +...-+..-.++. .+
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad 223 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD 223 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC
Confidence 344444 466666666666666889999999887765543 677777752 111 1 11 1111222233344 46
Q ss_pred CCEEEEeeCCC-eEEEEecc
Q 006939 85 GKLLGCSYNQS-CVGVWVVD 103 (625)
Q Consensus 85 g~lL~sg~~Dg-~V~vWdv~ 103 (625)
|.+.+++..++ .|..|+.+
T Consensus 224 G~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 224 GNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CCEEEecccCCceEEEECCC
Confidence 77665555554 88888776
No 360
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.49 E-value=20 Score=40.68 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=43.5
Q ss_pred EEEEEeCCCeEEEEECCCCeEE-EEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeC
Q 006939 5 FHFSGSADRTVKFWDLETFELI-GSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 61 (625)
Q Consensus 5 lLASGS~D~tVkIWDL~tg~~i-~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl 61 (625)
+++.||.+|.||+||- .+..- ..+.+-..+|..|..+.||.|+++.+...|.+-+.
T Consensus 443 ~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 443 YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 5788999999999996 44433 33677778999999999999998877666665554
No 361
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=56.26 E-value=1.9e+02 Score=32.82 Aligned_cols=99 Identities=12% Similarity=0.045 Sum_probs=50.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCC---CCeEEEEEcCCCCEEEEEe--------------CCcEEEEeCCC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPET---SGVRCLTFNPDGRTLLCGL--------------HESLKVFSWEP 63 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~---~~V~sv~fsPdg~~LvSgs--------------~DsIrVWdl~s 63 (625)
+||.+++..+ ..+..+|+. |+.+..+..-. ..=+.+.+-|+|++|+.+. .|.|..+| .+
T Consensus 157 ~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~t 232 (477)
T PF05935_consen 157 PNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PT 232 (477)
T ss_dssp TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TT
T ss_pred CCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CC
Confidence 5778877655 678888886 66655432211 1125677788999888665 23355555 55
Q ss_pred CeeEEEE---------------------------eccCCceeEEEe-c-CCCEEEEeeCCCeEEEEecc
Q 006939 64 IRCHDAV---------------------------DVGWSRLSDLNV-H-EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 64 g~~i~t~---------------------------~~~~s~v~~l~~-~-dg~lL~sg~~Dg~V~vWdv~ 103 (625)
|+.++.+ ...|-.+.++.. + ++.+|+++-+.+.|-..|.+
T Consensus 233 G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~ 301 (477)
T PF05935_consen 233 GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYR 301 (477)
T ss_dssp S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-T
T ss_pred CCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECC
Confidence 5544332 124555677776 3 67777777777777777744
No 362
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=56.19 E-value=50 Score=37.73 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=43.7
Q ss_pred CCCEEEEEeCCCeEEEEECCC----CeEEEE--eCCC--------------------CCCeEEEEEcC----CCCEEEEE
Q 006939 2 SGYFHFSGSADRTVKFWDLET----FELIGS--AGPE--------------------TSGVRCLTFNP----DGRTLLCG 51 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~t----g~~i~t--l~~h--------------------~~~V~sv~fsP----dg~~LvSg 51 (625)
++..|+.+..||.+....+.. +..... +..+ ...+..+.++. +..++++-
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566777788888887766553 221111 1100 12345566666 66788899
Q ss_pred eCC-cEEEEeCCCCeeEEEEecc
Q 006939 52 LHE-SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 52 s~D-sIrVWdl~sg~~i~t~~~~ 73 (625)
+.| .||+||+.++.|+.+....
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEETT
T ss_pred eCCCeEEEEECCCCeEEEEeccc
Confidence 999 9999999999997765443
No 363
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.11 E-value=28 Score=42.67 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=41.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCC---eEEEEEcCCCCEEEEEeCC
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSG---VRCLTFNPDGRTLLCGLHE 54 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~---V~sv~fsPdg~~LvSgs~D 54 (625)
||.+++.|-.+|.|.+||..+++.++.+..|+.+ |..+.+..++..++++..+
T Consensus 141 dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~ 196 (1206)
T KOG2079|consen 141 DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTG 196 (1206)
T ss_pred CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCC
Confidence 7899999999999999999999998888766554 4445556667767776555
No 364
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=52.38 E-value=13 Score=44.63 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=66.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC-C--cEEEEeCCC-CeeEEEEeccCCce
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-E--SLKVFSWEP-IRCHDAVDVGWSRL 77 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~-D--sIrVWdl~s-g~~i~t~~~~~s~v 77 (625)
+.++|+.|+..|.|++|++.+|.....+.+|.+.|+-+.=+-||...++.+. . -..+|+... +....++ ...
T Consensus 1112 ~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf----~ed 1187 (1516)
T KOG1832|consen 1112 GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF----DED 1187 (1516)
T ss_pred CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccc----ccc
Confidence 4578999999999999999999999999999999998887778887765443 2 367888753 2222222 222
Q ss_pred eEEEec---CCCEEEEeeCCCeEEEEecc
Q 006939 78 SDLNVH---EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 78 ~~l~~~---dg~lL~sg~~Dg~V~vWdv~ 103 (625)
..+.|. ..+.++|..+ ...+||+.
T Consensus 1188 ~~vkFsn~~q~r~~gt~~d--~a~~YDvq 1214 (1516)
T KOG1832|consen 1188 KAVKFSNSLQFRALGTEAD--DALLYDVQ 1214 (1516)
T ss_pred ceeehhhhHHHHHhccccc--ceEEEecc
Confidence 333442 2233444443 67889887
No 365
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=51.51 E-value=20 Score=41.85 Aligned_cols=62 Identities=16% Similarity=0.269 Sum_probs=45.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeE-----EEEe-CCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCC
Q 006939 2 SGYFHFSGSADRTVKFWDLETFEL-----IGSA-GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 63 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~-----i~tl-~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~s 63 (625)
++++.|.|+..+.|.++-+..+.. +... +.|...|+|++|++++..+++|..- .|.+-.+..
T Consensus 87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 567788899999999887765322 1112 3367889999999999999999775 666655554
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=51.21 E-value=2.8e+02 Score=30.23 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=69.0
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC---C-cEEEEeCCCCeeEEEEeccCCceeEE
Q 006939 5 FHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH---E-SLKVFSWEPIRCHDAVDVGWSRLSDL 80 (625)
Q Consensus 5 lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~---D-sIrVWdl~sg~~i~t~~~~~s~v~~l 80 (625)
.++....+..|.+.|..+..+++....- .....+.|.+++..++.+.. + ++-+.|-.+.+.......+..+ ..+
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~ 165 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGV 165 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceE
Confidence 4555556788999998877776664322 25678999999977665443 4 7888888888888877777766 445
Q ss_pred Ee-cCCCE-EEEeeCCCeEEEEecc
Q 006939 81 NV-HEGKL-LGCSYNQSCVGVWVVD 103 (625)
Q Consensus 81 ~~-~dg~l-L~sg~~Dg~V~vWdv~ 103 (625)
.+ ++|.. +++-..++.|.+.|..
T Consensus 166 a~~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 166 AVDPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred EECCCCCeEEEEecCCCeEEEEeCC
Confidence 55 77774 4555678899998865
No 367
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=50.99 E-value=1.7e+02 Score=30.62 Aligned_cols=97 Identities=19% Similarity=0.050 Sum_probs=56.0
Q ss_pred CCCEEEEEeCCC--eEEEEECCCCeEEEEeCCCC-CCeEEEEEcCCCCEEEEEeCCcEEEEeCCCCeeEEEEe---ccCC
Q 006939 2 SGYFHFSGSADR--TVKFWDLETFELIGSAGPET-SGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVD---VGWS 75 (625)
Q Consensus 2 dG~lLASGS~D~--tVkIWDL~tg~~i~tl~~h~-~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~i~t~~---~~~s 75 (625)
+|.++-+.+.-| .|+.+|+.+|+.+....--. -.--.++...|.-+.++--.+...+||..+.+.+..+. -+|+
T Consensus 55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWG 134 (264)
T PF05096_consen 55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWG 134 (264)
T ss_dssp TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--E
T ss_pred CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCcceE
Confidence 567777777766 68889999998765532211 11112333322222233222378899999888877664 4566
Q ss_pred ceeEEEecCCCEEEEeeCCCeEEEEecc
Q 006939 76 RLSDLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 76 ~v~~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
-+ ++++.|+.+.....+.++|..
T Consensus 135 Lt-----~dg~~Li~SDGS~~L~~~dP~ 157 (264)
T PF05096_consen 135 LT-----SDGKRLIMSDGSSRLYFLDPE 157 (264)
T ss_dssp EE-----ECSSCEEEE-SSSEEEEE-TT
T ss_pred EE-----cCCCEEEEECCccceEEECCc
Confidence 33 466667666666788888865
No 368
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=50.79 E-value=21 Score=40.77 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=25.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeC
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAG 30 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~ 30 (625)
+..+|++-+.|+++|+||+.+++++.+..
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 45688999999999999999999977653
No 369
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=47.75 E-value=41 Score=29.72 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhhhhCCchhHHHHHHHHHhhhcC
Q 006939 579 AEQRIERCNRCFIELEKVKCCL-PTLMRRGGSVAKSAQELNLALQDVS 625 (625)
Q Consensus 579 ~EeR~~kc~~c~~~L~~i~~~l-~~l~~~~g~~g~~a~el~~~l~~~~ 625 (625)
.|.||.+-+.|+.+|+++++-+ ..|+.|. ..-..|||--.-|..+|
T Consensus 14 L~~rYs~L~s~lkKfkq~q~~I~q~L~eRA-~~d~kaRE~l~rLd~aF 60 (107)
T PRK15365 14 LEQSYMQLNHCLKKFHQIRAKVSQQLAERA-ESPKKSRETESILHNLF 60 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Confidence 3689999999999999999988 6666554 56677888766666543
No 370
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=47.30 E-value=55 Score=31.92 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=54.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-----CCHHHHHHHHHhcCCchhHHHHHHHHHhcc
Q 006939 455 EDATADVMEQHSQFVSSMQSRLAKLQAVYRYWER-----NDVKGAISAMQKMADHTVLADVMSIVVEKI 518 (625)
Q Consensus 455 ~~~~~~l~~~H~~~~~vl~~R~~~L~~vr~~W~~-----~dik~ai~~~~~~~D~~VlvD~L~~l~~~~ 518 (625)
.|++..|...|++++.+|=++-..++.+|-.+.. =...--++++.+.+|...+..|...+.++.
T Consensus 82 lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 82 LDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4778888889999999999999999998888773 345677899999999999999999887754
No 371
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=46.40 E-value=1.1e+02 Score=34.25 Aligned_cols=91 Identities=14% Similarity=0.097 Sum_probs=49.1
Q ss_pred CCCCEEE-EEeCCCeEEE--EECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC--C--cEEEEeCCCCeeEEEEecc
Q 006939 1 MSGYFHF-SGSADRTVKF--WDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH--E--SLKVFSWEPIRCHDAVDVG 73 (625)
Q Consensus 1 PdG~lLA-SGS~D~tVkI--WDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~--D--sIrVWdl~sg~~i~t~~~~ 73 (625)
|||+.|+ +...|+...| .|+..+...+ +..-.+.-..-.|+|||++++=.++ + .|.+++++.+...+.-...
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred CCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 6777765 4456666554 5776666333 3221111124578999998875443 2 4888888876653322111
Q ss_pred CCceeEEEecCCCEEEEee
Q 006939 74 WSRLSDLNVHEGKLLGCSY 92 (625)
Q Consensus 74 ~s~v~~l~~~dg~lL~sg~ 92 (625)
.......-.++|++++..+
T Consensus 326 ~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 326 GGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred CCCcCccCCCCCCEEEEEe
Confidence 1111111126888775544
No 372
>PHA02713 hypothetical protein; Provisional
Probab=46.28 E-value=77 Score=36.63 Aligned_cols=87 Identities=8% Similarity=-0.072 Sum_probs=43.8
Q ss_pred eEEEEECCCCeEE--EEeCCCCCCeEEEEEcCCCCEEEEEeCC-------cEEEEeCCC-CeeEEEEec--cCCceeEEE
Q 006939 14 TVKFWDLETFELI--GSAGPETSGVRCLTFNPDGRTLLCGLHE-------SLKVFSWEP-IRCHDAVDV--GWSRLSDLN 81 (625)
Q Consensus 14 tVkIWDL~tg~~i--~tl~~h~~~V~sv~fsPdg~~LvSgs~D-------sIrVWdl~s-g~~i~t~~~--~~s~v~~l~ 81 (625)
++..||..+.+-. ..+.........+.+ +|.+++.|+.+ .+..||.++ .+-...... .... ..+.
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-~~~~ 509 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-LHTI 509 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-ceeE
Confidence 3566777665432 222111111112222 56666666642 356788776 443322222 2121 2223
Q ss_pred ecCCCEEEEeeCCC--eEEEEecc
Q 006939 82 VHEGKLLGCSYNQS--CVGVWVVD 103 (625)
Q Consensus 82 ~~dg~lL~sg~~Dg--~V~vWdv~ 103 (625)
..++++.+.|+.++ .+..||..
T Consensus 510 ~~~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 510 LHDNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred EECCEEEEEeeecceeehhhcCcc
Confidence 35788889999888 56666655
No 373
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=45.47 E-value=68 Score=22.56 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCCCEEEEEeCC--cEEEEeCCCCeeEEEEeccCC
Q 006939 43 PDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWS 75 (625)
Q Consensus 43 Pdg~~LvSgs~D--sIrVWdl~sg~~i~t~~~~~s 75 (625)
|++++++.+..+ +|.++|..++.....+.++..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~ 35 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY 35 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC
Confidence 577777765543 899999998888877776543
No 374
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=44.81 E-value=52 Score=38.82 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=54.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCe---------------eEEEEeccCCceeEEEe-cCCCEEEEeeCCC
Q 006939 33 TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR---------------CHDAVDVGWSRLSDLNV-HEGKLLGCSYNQS 95 (625)
Q Consensus 33 ~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~---------------~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg 95 (625)
.....|+.|+....++++|+.| .++|..+.+.. .-+++.+|...|..+.+ ...+.|.++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3567899999999999999998 89998876421 12345667777777777 4566788889999
Q ss_pred eEEEEecc
Q 006939 96 CVGVWVVD 103 (625)
Q Consensus 96 ~V~vWdv~ 103 (625)
.|-||-+-
T Consensus 94 lIiVWmly 101 (1189)
T KOG2041|consen 94 LIIVWMLY 101 (1189)
T ss_pred eEEEEeee
Confidence 99999764
No 375
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=43.45 E-value=1.8e+02 Score=29.61 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhcCCHH-HHHHHHHhc---------CCchhHHHHH--------HHHHhcccccchhhHHhhHHHHHHh
Q 006939 475 RLAKLQAVYRYWERNDVK-GAISAMQKM---------ADHTVLADVM--------SIVVEKIEIVTLDICSCLLPLLTGL 536 (625)
Q Consensus 475 R~~~L~~vr~~W~~~dik-~ai~~~~~~---------~D~~VlvD~L--------~~l~~~~~~~tLd~c~~lLP~i~~L 536 (625)
+..-++.+..+|..++-- .-|..+... .+.....+++ .++..+++ ...++++.|...
T Consensus 55 ~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~ 129 (234)
T PF12530_consen 55 RYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGC 129 (234)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHH
Confidence 446678888999988843 344433333 2222222222 33445555 789999999999
Q ss_pred h-ccCCchhHHHHHHHHHHHH
Q 006939 537 L-ESDMDRHLSISLDILLKLV 556 (625)
Q Consensus 537 L-~Sk~E~~v~~al~~l~~i~ 556 (625)
| +...+.-...|++.|..+.
T Consensus 130 L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 130 LNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HhccccHHHHHHHHHHHHHHH
Confidence 9 7888888888888888776
No 376
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=42.81 E-value=1.3e+02 Score=33.73 Aligned_cols=86 Identities=15% Similarity=0.204 Sum_probs=49.6
Q ss_pred eEEEEECCCCeE--EEEeCCCCCCeEEEEEcCCCCEEE-EEeCC---cEEEEeCCCCeeEEEEeccCCceeEEEe-cCCC
Q 006939 14 TVKFWDLETFEL--IGSAGPETSGVRCLTFNPDGRTLL-CGLHE---SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGK 86 (625)
Q Consensus 14 tVkIWDL~tg~~--i~tl~~h~~~V~sv~fsPdg~~Lv-Sgs~D---sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~ 86 (625)
.+.++|+.+++. +..+.++. ..-.|+|||+.|+ +...| .|.++|+..+...+ +....+....=.+ ++|+
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGS 294 (425)
T ss_pred eEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCC
Confidence 478889888765 33444443 3457999998776 44444 47888887766333 2211111111122 6888
Q ss_pred EE-EEeeCCCeEEEEecc
Q 006939 87 LL-GCSYNQSCVGVWVVD 103 (625)
Q Consensus 87 lL-~sg~~Dg~V~vWdv~ 103 (625)
.+ ..+...|.-.||-++
T Consensus 295 ~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred EEEEEeCCCCCcceEEEC
Confidence 76 455556666666555
No 377
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=42.55 E-value=2e+02 Score=32.43 Aligned_cols=92 Identities=17% Similarity=0.321 Sum_probs=47.7
Q ss_pred CCeEEEEECCCCeEEEEeCCC--CCCeEEEEEc--CCCCEEEEEeC-C-cEEEE-eCCCCee--EEEEec------cC--
Q 006939 12 DRTVKFWDLETFELIGSAGPE--TSGVRCLTFN--PDGRTLLCGLH-E-SLKVF-SWEPIRC--HDAVDV------GW-- 74 (625)
Q Consensus 12 D~tVkIWDL~tg~~i~tl~~h--~~~V~sv~fs--Pdg~~LvSgs~-D-sIrVW-dl~sg~~--i~t~~~------~~-- 74 (625)
-.++.+||+.+.+.+.++.-= ...+.-|+|. |+..+-++|+. . +|..| .-..+.- ..++.. +|
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 468999999999998887432 2235566664 44555444433 3 44433 2233332 111111 23
Q ss_pred -----------CceeEEEe-cCCCEE-EEeeCCCeEEEEecc
Q 006939 75 -----------SRLSDLNV-HEGKLL-GCSYNQSCVGVWVVD 103 (625)
Q Consensus 75 -----------s~v~~l~~-~dg~lL-~sg~~Dg~V~vWdv~ 103 (625)
..+.+|.+ .|+++| ++..-+|.|+.||+.
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 23577776 466666 788889999999997
No 378
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=42.30 E-value=2.2e+02 Score=31.63 Aligned_cols=49 Identities=8% Similarity=0.189 Sum_probs=37.3
Q ss_pred eEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCC
Q 006939 14 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 63 (625)
Q Consensus 14 tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~s 63 (625)
.|.||+.. |+.+..+.-..+.+.++.|+.+..+++...++.+++||+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 48888865 77777654333889999999887777766666999999873
No 379
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=41.79 E-value=2.2e+02 Score=35.77 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=41.6
Q ss_pred CCCCEEEEEe---CCCeEEEEECC---CCeEEEEeCCCCCCeEEEEEcCCCCEEEE---EeCC-cEEEEeCCCCe
Q 006939 1 MSGYFHFSGS---ADRTVKFWDLE---TFELIGSAGPETSGVRCLTFNPDGRTLLC---GLHE-SLKVFSWEPIR 65 (625)
Q Consensus 1 PdG~lLASGS---~D~tVkIWDL~---tg~~i~tl~~h~~~V~sv~fsPdg~~LvS---gs~D-sIrVWdl~sg~ 65 (625)
|.|.++|+-. .|..|.+|.-+ .|+....+..-...|..++|+.++..|+. .... .|++|-..+..
T Consensus 251 Psgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 251 PSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 6788888753 45578887532 23322223222334899999999998876 4445 59999876543
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=41.65 E-value=4.4e+02 Score=27.68 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=54.0
Q ss_pred eCCCeEEEEECCCCeEEEEe--CCCCCCeEEEEEcCCCC-EEEEEeCCcEEEEeCCCCeeEEEEecc-----CCceeEEE
Q 006939 10 SADRTVKFWDLETFELIGSA--GPETSGVRCLTFNPDGR-TLLCGLHESLKVFSWEPIRCHDAVDVG-----WSRLSDLN 81 (625)
Q Consensus 10 S~D~tVkIWDL~tg~~i~tl--~~h~~~V~sv~fsPdg~-~LvSgs~DsIrVWdl~sg~~i~t~~~~-----~s~v~~l~ 81 (625)
=.++...+||..+.+.+.++ .++..++ + .||. ++.|-+.+.|.++|..+.+....+.+. ...++.+-
T Consensus 107 Wk~~~~f~yd~~tl~~~~~~~y~~EGWGL---t--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 107 WKEGTGFVYDPNTLKKIGTFPYPGEGWGL---T--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp SSSSEEEEEETTTTEEEEEEE-SSS--EE---E--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred ecCCeEEEEccccceEEEEEecCCcceEE---E--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 35678889999999998876 3333443 3 3554 455555558999999887776665442 23345566
Q ss_pred ecCCCEEEEeeCCCeEEEEecc
Q 006939 82 VHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 82 ~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.+|.+.+--.....|..-|..
T Consensus 182 ~i~G~IyANVW~td~I~~Idp~ 203 (264)
T PF05096_consen 182 YINGKIYANVWQTDRIVRIDPE 203 (264)
T ss_dssp EETTEEEEEETTSSEEEEEETT
T ss_pred EEcCEEEEEeCCCCeEEEEeCC
Confidence 6677777776666666666555
No 381
>PHA02713 hypothetical protein; Provisional
Probab=41.52 E-value=1.4e+02 Score=34.50 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=27.4
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCeEEE--EeCCCCCCeEEEEEcCCCCEEEEEeC
Q 006939 2 SGYFHFSGSADR-----TVKFWDLETFELIG--SAGPETSGVRCLTFNPDGRTLLCGLH 53 (625)
Q Consensus 2 dG~lLASGS~D~-----tVkIWDL~tg~~i~--tl~~h~~~V~sv~fsPdg~~LvSgs~ 53 (625)
+|++.+.||.++ +|..||..+.+-.. .+.........+.+ +|.+++.||.
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~ 407 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGR 407 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCC
Confidence 577778888764 47789987654322 22211111222222 6777777764
No 382
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=39.91 E-value=3e+02 Score=31.08 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=56.9
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEE-----------------eCC-cEEEEeCCCCee
Q 006939 5 FHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-----------------LHE-SLKVFSWEPIRC 66 (625)
Q Consensus 5 lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSg-----------------s~D-sIrVWdl~sg~~ 66 (625)
+++.++.++.+.-.|.++|+.+....... ..+...| +..++.. ..+ .+...|..+|+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~ 378 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV 378 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE
Confidence 57778889999999999999876653210 1122233 2222211 112 677788888887
Q ss_pred EEEEeccC--------Cc--eeEEEecCCCEEEEeeCCCeEEEEecc
Q 006939 67 HDAVDVGW--------SR--LSDLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 67 i~t~~~~~--------s~--v~~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+....... .. ...+. -.+.+|..++.|+.|+.+|.+
T Consensus 379 ~W~~~~~~~~~~~~~g~~~~~~~~~-~~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 379 VWEKREGTIRDSWNIGFPHWGGSLA-TAGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred eeEeeCCccccccccCCcccCcceE-ecCCeEEEECCCCeEEEEECC
Confidence 76665431 00 01122 245677777889999998876
No 383
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=39.06 E-value=3.1e+02 Score=28.80 Aligned_cols=87 Identities=14% Similarity=0.151 Sum_probs=54.1
Q ss_pred CeEEEEECCCC-----eE--EEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCCCe-eEEEEec-cCCceeEEEec
Q 006939 13 RTVKFWDLETF-----EL--IGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIR-CHDAVDV-GWSRLSDLNVH 83 (625)
Q Consensus 13 ~tVkIWDL~tg-----~~--i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~-~i~t~~~-~~s~v~~l~~~ 83 (625)
|.|.++++... ++ +... ...++|++++-. .| .++.|....|.+|++.... ....... ....+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CC-EEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 78999999874 22 2222 235789998755 44 4666665699999998776 4332221 22355666654
Q ss_pred CCCEEEEeeCCCeEEEEecc
Q 006939 84 EGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 84 dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+.+++.|..-..|.++.++
T Consensus 139 -~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 139 -KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp -TTEEEEEESSSSEEEEEEE
T ss_pred -ccEEEEEEcccCEEEEEEE
Confidence 4477777766777777554
No 384
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=39.02 E-value=5.5e+02 Score=28.02 Aligned_cols=101 Identities=14% Similarity=0.185 Sum_probs=61.6
Q ss_pred CCCCEEEEEe----------CCCeEEEEECCCCeEEEEe--CC--CC---CCeEEEEEcCCCCEEEEEeC--C-cEEEEe
Q 006939 1 MSGYFHFSGS----------ADRTVKFWDLETFELIGSA--GP--ET---SGVRCLTFNPDGRTLLCGLH--E-SLKVFS 60 (625)
Q Consensus 1 PdG~lLASGS----------~D~tVkIWDL~tg~~i~tl--~~--h~---~~V~sv~fsPdg~~LvSgs~--D-sIrVWd 60 (625)
|||+.+++++ ..-.|.+||..+-.....+ .+ +. .....+.++.||++++..-- - +|-|-|
T Consensus 45 pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVD 124 (342)
T PF06433_consen 45 PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVD 124 (342)
T ss_dssp TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEE
T ss_pred CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEE
Confidence 5677776643 2335889999988766543 21 11 12345678899998876543 3 799999
Q ss_pred CCCCeeEEEEeccCCceeEEEecCCCEEEEeeCCCeEEEEecc
Q 006939 61 WEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 61 l~sg~~i~t~~~~~s~v~~l~~~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+..++....+... .|..+......-+.+-|.||.+....++
T Consensus 125 l~~~kvv~ei~~P--GC~~iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 125 LAAKKVVGEIDTP--GCWLIYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp TTTTEEEEEEEGT--SEEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred CCCCceeeeecCC--CEEEEEecCCCceEEEecCCceEEEEEC
Confidence 9988887766543 2334433222334455667888777776
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=38.75 E-value=48 Score=25.29 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeE
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFEL 25 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~ 25 (625)
|...+||.|+.||.|.+|.+ +++.
T Consensus 21 P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 21 PTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCCEEEEEECCCeEEEEEC-CCcC
Confidence 67889999999999999988 4543
No 386
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=38.26 E-value=78 Score=29.84 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=52.8
Q ss_pred HhcCCchhHHHHHHHHHhcccccchhhHHhhHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 006939 499 QKMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAIS 568 (625)
Q Consensus 499 ~~~~D~~VlvD~L~~l~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~v~~al~~l~~i~~~F~~~I~~~~~ 568 (625)
..-.|.+...|+-..|+..+. .+-..+-.|.+-|+++...-+..||..|..++++.|+.++..+.
T Consensus 14 l~~~dw~~ileicD~In~~~~-----~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva 78 (139)
T cd03567 14 NREEDWEAIQAFCEQINKEPE-----GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVG 78 (139)
T ss_pred CCCCCHHHHHHHHHHHHcCCc-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 344788888888888877653 35566777888899999988999999999999999998877654
No 387
>PHA03098 kelch-like protein; Provisional
Probab=38.03 E-value=1.6e+02 Score=33.44 Aligned_cols=99 Identities=13% Similarity=0.175 Sum_probs=48.0
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCeEEEE--eCCCCCCeEEEEEcCCCCEEEEEeCC---------cEEEEeCCCC
Q 006939 2 SGYFHFSGSAD------RTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHE---------SLKVFSWEPI 64 (625)
Q Consensus 2 dG~lLASGS~D------~tVkIWDL~tg~~i~t--l~~h~~~V~sv~fsPdg~~LvSgs~D---------sIrVWdl~sg 64 (625)
+|++.+.||.+ ..+..||+.+.+-... +....... ++.. -++.+++.|+.+ .+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 45667777632 3577888876553221 11111111 2222 256666666542 2777887765
Q ss_pred eeEEEEec--cCCceeEEEecCCCEEEEeeCC-----CeEEEEecc
Q 006939 65 RCHDAVDV--GWSRLSDLNVHEGKLLGCSYNQ-----SCVGVWVVD 103 (625)
Q Consensus 65 ~~i~t~~~--~~s~v~~l~~~dg~lL~sg~~D-----g~V~vWdv~ 103 (625)
+....-.. ..... .+...++++++.|+.+ +.|.+||..
T Consensus 467 ~W~~~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 467 KWTELSSLNFPRINA-SLCIFNNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred ceeeCCCCCcccccc-eEEEECCEEEEEcCCcCCcccceeEEEeCC
Confidence 54322111 11111 1122366777777654 356666655
No 388
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=37.54 E-value=2e+02 Score=32.60 Aligned_cols=68 Identities=13% Similarity=0.060 Sum_probs=44.0
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCC------CeE--EEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEec
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETS------GVR--CLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV 72 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~------~V~--sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~ 72 (625)
..+..++.|+.|.-.|+.+|+.+-.+..... .+. .+.+. ++..++.+..+ .|..+|.++|+.+..+..
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 3455677789999999999998776644322 010 11111 31455555566 899999999998876654
No 389
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=37.15 E-value=64 Score=21.84 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=25.8
Q ss_pred hHHHHHHhhccCCchhHHHHHHHHHHHHHH
Q 006939 529 LLPLLTGLLESDMDRHLSISLDILLKLVRT 558 (625)
Q Consensus 529 lLP~i~~LL~Sk~E~~v~~al~~l~~i~~~ 558 (625)
|||.+..+++.+.++--..|+..|..|.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999888763
No 390
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=36.48 E-value=1.6e+02 Score=32.99 Aligned_cols=73 Identities=15% Similarity=0.044 Sum_probs=48.5
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCC-eEEEEEcCC-C----------------CEEEE-Ee-CCcEEEEe
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSG-VRCLTFNPD-G----------------RTLLC-GL-HESLKVFS 60 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~-V~sv~fsPd-g----------------~~LvS-gs-~DsIrVWd 60 (625)
|++.+.|....=|.|.++|+.++..++.++|..+. +.-+..... . .+|+- +- .+.|-||+
T Consensus 317 P~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~ 396 (415)
T PF14655_consen 317 PSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILEVWS 396 (415)
T ss_pred CCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEEEEe
Confidence 78888888877789999999999999988887543 111111111 1 12222 22 33788999
Q ss_pred CCCCeeEEEEecc
Q 006939 61 WEPIRCHDAVDVG 73 (625)
Q Consensus 61 l~sg~~i~t~~~~ 73 (625)
++.|..+..+.++
T Consensus 397 ~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 397 MRQGPRVAAFNVG 409 (415)
T ss_pred cCCCCEEEEEEeC
Confidence 9888887776654
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=36.38 E-value=3e+02 Score=32.23 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=36.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCcEEE---EeCCCCee-E---EEEeccCCc-eeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 33 TSGVRCLTFNPDGRTLLCGLHESLKV---FSWEPIRC-H---DAVDVGWSR-LSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 33 ~~~V~sv~fsPdg~~LvSgs~DsIrV---Wdl~sg~~-i---~t~~~~~s~-v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
...|..+.|+|||..++--..+.|.| -.-..|.. + ..+...... +.++.| .++.++ .+..++...+|.+.
T Consensus 447 ~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred CCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 45799999999999776544445554 33333431 1 112122222 345566 455444 44444545566544
No 392
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=35.89 E-value=99 Score=28.79 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=50.8
Q ss_pred CCchhHHHHHHHHHhcccccchhhHHhhHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006939 502 ADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISA 569 (625)
Q Consensus 502 ~D~~VlvD~L~~l~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~v~~al~~l~~i~~~F~~~I~~~~~~ 569 (625)
.|.+.+.++-..++.. -+.+-..+-.|.+=|++....-+..||..|..++++.|+.++..+..
T Consensus 21 ~Dw~~~l~icD~i~~~-----~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~ 83 (140)
T PF00790_consen 21 PDWSLILEICDLINSS-----PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVAS 83 (140)
T ss_dssp --HHHHHHHHHHHHTS-----TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHcC-----CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhH
Confidence 5777777766666555 45778888899999999999999999999999999999988887644
No 393
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.35 E-value=1.7e+02 Score=29.49 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=40.5
Q ss_pred EcCCCCEEEEEeCC-cEEEEeCCCCeeEEEE-------e-------ccCCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 41 FNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-------D-------VGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 41 fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~-------~-------~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
+...+.++++-..+ .+++||+..++++..- . .....+..+.+ .+|.-+++ ..+|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEeccc
Confidence 44467777766666 9999999988774321 1 13344555555 46666554 455788999887
No 394
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=35.20 E-value=80 Score=28.14 Aligned_cols=61 Identities=10% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCchhHHHHHHHHHhcccccchhhHHhhHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 006939 502 ADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAI 567 (625)
Q Consensus 502 ~D~~VlvD~L~~l~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~v~~al~~l~~i~~~F~~~I~~~~ 567 (625)
+|...+-++...++.. .+.|..++-.|.+-|+++..+++.-||.+|..++++.|+.+..-+
T Consensus 16 p~~~~i~~i~d~~~~~-----~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i 76 (115)
T cd00197 16 PDWPLIMEICDLINET-----NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEV 76 (115)
T ss_pred CCHHHHHHHHHHHHCC-----CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4555555555555432 366788999999999999999999999999999999999877654
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=34.40 E-value=4.9e+02 Score=27.77 Aligned_cols=93 Identities=11% Similarity=0.142 Sum_probs=42.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeC-CCCeeE-E-EEe--ccC
Q 006939 1 MSGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW-EPIRCH-D-AVD--VGW 74 (625)
Q Consensus 1 PdG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl-~sg~~i-~-t~~--~~~ 74 (625)
+||.+++.++.-....-||--...-...-..-...|..+.|.|++.+.+.+ .+ .|++=+. .....- . ... ...
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~ 232 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNG 232 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCc
Confidence 578888777655545567643211111112234789999999998877655 55 6766551 111110 1 011 122
Q ss_pred CceeEEEe-cCCCEEEEeeCC
Q 006939 75 SRLSDLNV-HEGKLLGCSYNQ 94 (625)
Q Consensus 75 s~v~~l~~-~dg~lL~sg~~D 94 (625)
-.+.++.+ +++.+.++|+..
T Consensus 233 ~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 233 YGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp S-EEEEEESSSS-EEEEESTT
T ss_pred eeeEEEEecCCCCEEEEeCCc
Confidence 22567777 455555655553
No 396
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=33.55 E-value=1.1e+02 Score=31.77 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=44.5
Q ss_pred EEEECCCCeEEEEeCCC-CCCeEEEEEcCCCCEEEEEeCC----cEEEEeCCC--CeeEEE-----E-eccCCceeEEEe
Q 006939 16 KFWDLETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEP--IRCHDA-----V-DVGWSRLSDLNV 82 (625)
Q Consensus 16 kIWDL~tg~~i~tl~~h-~~~V~sv~fsPdg~~LvSgs~D----sIrVWdl~s--g~~i~t-----~-~~~~s~v~~l~~ 82 (625)
-+||+.+++.. .+... ...+..-.|-+||+++.+|++. .+++|+... +.|-.. + ..+|=. .....
T Consensus 49 ~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp-T~~~L 126 (243)
T PF07250_consen 49 VEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP-TATTL 126 (243)
T ss_pred EEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccc-cceEC
Confidence 47888887653 33222 1222333578999999998862 588887543 122111 1 123322 23334
Q ss_pred cCCCEEEEeeCC
Q 006939 83 HEGKLLGCSYNQ 94 (625)
Q Consensus 83 ~dg~lL~sg~~D 94 (625)
+||+.|+.|+..
T Consensus 127 ~DG~vlIvGG~~ 138 (243)
T PF07250_consen 127 PDGRVLIVGGSN 138 (243)
T ss_pred CCCCEEEEeCcC
Confidence 789999888876
No 397
>PHA02790 Kelch-like protein; Provisional
Probab=33.51 E-value=2.8e+02 Score=31.32 Aligned_cols=100 Identities=5% Similarity=-0.073 Sum_probs=49.2
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCeEEEE--eCCCCCCeEEEEEcCCCCEEEEEeCC---cEEEEeCCCCeeEEEEe
Q 006939 2 SGYFHFSGSADR-----TVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHE---SLKVFSWEPIRCHDAVD 71 (625)
Q Consensus 2 dG~lLASGS~D~-----tVkIWDL~tg~~i~t--l~~h~~~V~sv~fsPdg~~LvSgs~D---sIrVWdl~sg~~i~t~~ 71 (625)
++.+++.|+.++ ++..||..+...... +.........+. -+|.+++.||.+ ++..||...+.....-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 355677787653 566788877654332 211111112222 367777777753 57777765544322212
Q ss_pred ccCCce-eEEEecCCCEEEEeeCCC---eEEEEecc
Q 006939 72 VGWSRL-SDLNVHEGKLLGCSYNQS---CVGVWVVD 103 (625)
Q Consensus 72 ~~~s~v-~~l~~~dg~lL~sg~~Dg---~V~vWdv~ 103 (625)
...... ......+|++.+.|+.++ .+..||..
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCC
Confidence 111111 112224677777776543 34455544
No 398
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.35 E-value=1.1e+02 Score=34.84 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=56.0
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcccccchhhHHhhHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 006939 494 AISAMQKMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAI 567 (625)
Q Consensus 494 ai~~~~~~~D~~VlvD~L~~l~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~v~~al~~l~~i~~~F~~~I~~~~ 567 (625)
|-.....-+|+++-.++-..|+... +.+.+..=.|++.|++|+-.=...||.+|..++|++|..++.-+
T Consensus 9 AT~~~l~~pDWa~NleIcD~IN~~~-----~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~V 77 (470)
T KOG1087|consen 9 ATSESLAEPDWALNLEICDLINSTE-----GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQV 77 (470)
T ss_pred hhcccccCccHHHHHHHHHHHhcCc-----cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4444555689999888888887765 34448888899999999998888999999999999999998544
No 399
>PHA03098 kelch-like protein; Provisional
Probab=33.18 E-value=2.2e+02 Score=32.24 Aligned_cols=91 Identities=13% Similarity=0.066 Sum_probs=42.4
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCeEEEEeC-CCCCCeEEEEEcCCCCEEEEEeC-------CcEEEEeCCCCeeEE
Q 006939 2 SGYFHFSGSAD-----RTVKFWDLETFELIGSAG-PETSGVRCLTFNPDGRTLLCGLH-------ESLKVFSWEPIRCHD 68 (625)
Q Consensus 2 dG~lLASGS~D-----~tVkIWDL~tg~~i~tl~-~h~~~V~sv~fsPdg~~LvSgs~-------DsIrVWdl~sg~~i~ 68 (625)
+|++++.||.+ .++..||..+.+-...-. .+...-.+++. -++.+++.||. +.+.+||..+.+...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 46677777765 246678877654322111 01111112222 25666666663 236778876654332
Q ss_pred EEeccCCc-eeEEEecCCCEEEEeeC
Q 006939 69 AVDVGWSR-LSDLNVHEGKLLGCSYN 93 (625)
Q Consensus 69 t~~~~~s~-v~~l~~~dg~lL~sg~~ 93 (625)
.-...... ...+...++++++.|+.
T Consensus 421 ~~~~p~~r~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 421 GSPLPISHYGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred cCCCCccccCceEEEECCEEEEECCc
Confidence 11111000 01122346667777664
No 400
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=32.96 E-value=1.5e+02 Score=29.47 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=42.7
Q ss_pred hHHhhHHHHHHhhccCCchhHHHHHHHHHHH--------------HHHHHHHHHHhhccCCCcccCccHHHHHHHHHHHH
Q 006939 525 ICSCLLPLLTGLLESDMDRHLSISLDILLKL--------------VRTFGSMIYSAISASTSVGVDIEAEQRIERCNRCF 590 (625)
Q Consensus 525 ~c~~lLP~i~~LL~Sk~E~~v~~al~~l~~i--------------~~~F~~~I~~~~~~~~~~gVDl~~EeR~~kc~~c~ 590 (625)
+...|.+-|+..|+++..+-+..+|++|+.+ .+...|++.-........|-.|-- .+. +.+
T Consensus 77 vlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y-~~~----~~~ 151 (183)
T PF10274_consen 77 VLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDY-RKR----KNL 151 (183)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCccccc-ccc----cch
Confidence 3345556677777777777777777777777 333333333222233334433332 111 111
Q ss_pred HHHHHHHhhhhhhhhhCCchh
Q 006939 591 IELEKVKCCLPTLMRRGGSVA 611 (625)
Q Consensus 591 ~~L~~i~~~l~~l~~~~g~~g 611 (625)
. ..|...|+.|.+.+|+-|
T Consensus 152 ~--dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 152 G--DLIQETLELLERNGGPDA 170 (183)
T ss_pred h--HHHHHHHHHHHHhcChhH
Confidence 1 245566778888888743
No 401
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=31.90 E-value=3.7e+02 Score=31.80 Aligned_cols=68 Identities=7% Similarity=-0.027 Sum_probs=45.2
Q ss_pred CeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEe-ccCCceeEEEe---cCCCEEEEeeCCCeEEEEec
Q 006939 35 GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVD-VGWSRLSDLNV---HEGKLLGCSYNQSCVGVWVV 102 (625)
Q Consensus 35 ~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~-~~~s~v~~l~~---~dg~lL~sg~~Dg~V~vWdv 102 (625)
...-+.-+.-++..+.-... .+.|||.+.+....... .....|.++.| ++++.+++-|..+.|.+|..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 34444444455555554445 89999999887543222 23466777776 68888888778889999854
No 402
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=31.66 E-value=4.9e+02 Score=25.26 Aligned_cols=117 Identities=12% Similarity=0.083 Sum_probs=79.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHhcCCc----hhHHHHH-HHHHhcccccchhhHHhhHHH
Q 006939 458 TADVMEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQKMADH----TVLADVM-SIVVEKIEIVTLDICSCLLPL 532 (625)
Q Consensus 458 ~~~l~~~H~~~~~vl~~R~~~L~~vr~~W~~~dik~ai~~~~~~~D~----~VlvD~L-~~l~~~~~~~tLd~c~~lLP~ 532 (625)
++.=++++..=..-..-|...++...++..-||+..|+++..++-|. +-.+|+. ++|.--...=+.+.....+..
T Consensus 19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33334444444444455777788999999999999999999999653 3445543 444444455566777888888
Q ss_pred HHHhhccCC----chhHHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Q 006939 533 LTGLLESDM----DRHLSISLDILLKLVRTFGSMIYSAISASTSVG 574 (625)
Q Consensus 533 i~~LL~Sk~----E~~v~~al~~l~~i~~~F~~~I~~~~~~~~~~g 574 (625)
++.++..-- ...+.++.-+.....+.|..--...+...+..+
T Consensus 99 a~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 99 AESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 888888733 224566666666677888887777777765544
No 403
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.86 E-value=3.4e+02 Score=23.14 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=53.5
Q ss_pred hhHHHHHHhhcc------CCchhHHHHHHHHHHHHHHHHHHHHHhhccCCCcccCccHHHHHHHHHHHHHHHHHHHhhhh
Q 006939 528 CLLPLLTGLLES------DMDRHLSISLDILLKLVRTFGSMIYSAISASTSVGVDIEAEQRIERCNRCFIELEKVKCCLP 601 (625)
Q Consensus 528 ~lLP~i~~LL~S------k~E~~v~~al~~l~~i~~~F~~~I~~~~~~~~~~gVDl~~EeR~~kc~~c~~~L~~i~~~l~ 601 (625)
.+||.|..+|.. ..-..+..+...|+.=+++....|++. -|+|-+-||..+.=...-+++..-+.+|.
T Consensus 3 e~lP~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~l------pgi~~s~eeq~~~i~~Le~~i~~k~~~L~ 76 (83)
T PF07544_consen 3 EFLPLIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIREL------PGIDRSVEEQEEEIEELEEQIRKKREVLQ 76 (83)
T ss_pred cccchHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC------CCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777743 223477888888888888888887763 25888889988877777777777777777
Q ss_pred hhhhh
Q 006939 602 TLMRR 606 (625)
Q Consensus 602 ~l~~~ 606 (625)
.+..+
T Consensus 77 ~~~~~ 81 (83)
T PF07544_consen 77 KFKER 81 (83)
T ss_pred HHHHh
Confidence 76554
No 404
>PHA02790 Kelch-like protein; Provisional
Probab=30.55 E-value=3.2e+02 Score=30.88 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=49.2
Q ss_pred CCCEEEEEeCCC---eEEEEECCCCeEEEE--eCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCCCCeeEEEEeccCCc
Q 006939 2 SGYFHFSGSADR---TVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSR 76 (625)
Q Consensus 2 dG~lLASGS~D~---tVkIWDL~tg~~i~t--l~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~sg~~i~t~~~~~s~ 76 (625)
+|++.+.||.++ ++-.||..+..-... +.........+.+ +|.+++.|+ ...+||.++.+-...-......
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~GG--~~e~ydp~~~~W~~~~~m~~~r 437 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVGR--NAEFYCESSNTWTLIDDPIYPR 437 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEECC--ceEEecCCCCcEeEcCCCCCCc
Confidence 567778877654 466788776543221 1111111122222 566666665 3566777665443222111111
Q ss_pred -eeEEEecCCCEEEEeeCC-----CeEEEEecc
Q 006939 77 -LSDLNVHEGKLLGCSYNQ-----SCVGVWVVD 103 (625)
Q Consensus 77 -v~~l~~~dg~lL~sg~~D-----g~V~vWdv~ 103 (625)
-..+...++++.+.||.+ ..|..||..
T Consensus 438 ~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 438 DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred cccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 112233577888888754 346666655
No 405
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=30.39 E-value=1e+02 Score=27.56 Aligned_cols=46 Identities=15% Similarity=0.319 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcccccchhhHHhhHHHHHHhh
Q 006939 491 VKGAISAMQKMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLL 537 (625)
Q Consensus 491 ik~ai~~~~~~~D~~VlvD~L~~l~~~~~~~tLd~c~~lLP~i~~LL 537 (625)
|..|+.+.+|+||.+.-|=+|-.+..|... +-++-..+|..|+.+|
T Consensus 45 i~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~lqeikp~l 90 (103)
T cd00923 45 IEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYILQEIKPTL 90 (103)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHHHHHhHHH
Confidence 568999999999999999999988877643 3345555665555544
No 406
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=30.33 E-value=1e+02 Score=35.24 Aligned_cols=59 Identities=8% Similarity=0.109 Sum_probs=44.5
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCCcEEEEeCC
Q 006939 4 YFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 62 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~DsIrVWdl~ 62 (625)
-++|.||..|-|++||--.......+.+-...|..|..+.+|.++++.+...|.+-|+.
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 46789999999999995433333345666678889999999999988887777776654
No 407
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=29.82 E-value=4.2e+02 Score=27.99 Aligned_cols=55 Identities=11% Similarity=0.192 Sum_probs=38.9
Q ss_pred CCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEe------CC-cEEEEeCCCCee
Q 006939 12 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL------HE-SLKVFSWEPIRC 66 (625)
Q Consensus 12 D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs------~D-sIrVWdl~sg~~ 66 (625)
-..|++||....+-...-.+-.+.|.++.|..+..+++.|. .. .+..||+.....
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 34689999987765544445567899999986666666664 23 688899876543
No 408
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=29.31 E-value=4.6e+02 Score=28.05 Aligned_cols=66 Identities=23% Similarity=0.338 Sum_probs=44.3
Q ss_pred cchhhHHhhHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHhhccCCCcccCccHHHHHHHHHHHHHHHHHHHh
Q 006939 521 VTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISASTSVGVDIEAEQRIERCNRCFIELEKVKC 598 (625)
Q Consensus 521 ~tLd~c~~lLP~i~~LL~Sk~E~~v~~al~~l~~i~~~F~~~I~~~~~~~~~~gVDl~~EeR~~kc~~c~~~L~~i~~ 598 (625)
-.+..|..+|-.+-..+.+.++ +...|....+.|++.....|...+.... ......|.+-|..|..
T Consensus 20 ~~~~~~~~~L~~~l~~ls~~~~-~~~~g~~l~~~iL~~~~k~lyr~L~~~~-----------~~~~~~~LrLL~~iv~ 85 (330)
T PF11707_consen 20 SLLSLVSSVLALLLKKLSSDLS-FQSYGLELIRSILQNHLKLLYRSLSSSK-----------PSLTNPALRLLTAIVS 85 (330)
T ss_pred hhHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHHHHHhCcCc-----------HHHHHHHHHHHHHHHc
Confidence 3444555556666666666666 7788899999999999888888887653 1122366666666655
No 409
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=28.65 E-value=1.5e+02 Score=27.95 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=50.9
Q ss_pred hcCCchhHHHHHHHHHhcccccchhhHHhhHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 006939 500 KMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAIS 568 (625)
Q Consensus 500 ~~~D~~VlvD~L~~l~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~v~~al~~l~~i~~~F~~~I~~~~~ 568 (625)
...|.+...++-..++.+. +.+-..+-.|.+-|+++...-+.-||..|..++++.|..++..+.
T Consensus 18 ~~~dw~~ileicD~In~~~-----~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva 81 (142)
T cd03569 18 GEPDLASILEICDMIRSKD-----VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVA 81 (142)
T ss_pred CccCHHHHHHHHHHHhCCC-----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHh
Confidence 3478898666666665553 347788888999999999999999999999999999998777654
No 410
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=28.17 E-value=1.2e+02 Score=27.95 Aligned_cols=64 Identities=11% Similarity=0.069 Sum_probs=52.0
Q ss_pred hcCCchhHHHHHHHHHhcccccchhhHHhhHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 006939 500 KMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAIS 568 (625)
Q Consensus 500 ~~~D~~VlvD~L~~l~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~v~~al~~l~~i~~~F~~~I~~~~~ 568 (625)
.-.|.+...++-..|+.. -+.+-..+-.|.+-|+++...-+.-||..|..++++.|+.++..+.
T Consensus 14 ~~~D~~~il~icd~I~~~-----~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~ 77 (133)
T cd03561 14 EEPDWALNLELCDLINLK-----PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVA 77 (133)
T ss_pred CCccHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHh
Confidence 346788877777777666 3567788889999999998888899999999999999997766553
No 411
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=27.70 E-value=2.9e+02 Score=30.01 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCEEEEE----eCC--cEEEEeCCCCeeEE-EEeccCCceeEEEe-cCCCEEEEee
Q 006939 36 VRCLTFNPDGRTLLCG----LHE--SLKVFSWEPIRCHD-AVDVGWSRLSDLNV-HEGKLLGCSY 92 (625)
Q Consensus 36 V~sv~fsPdg~~LvSg----s~D--sIrVWdl~sg~~i~-t~~~~~s~v~~l~~-~dg~lL~sg~ 92 (625)
+....++|||++++-+ |.+ .|+++|+++|+.+. .+.. .....+.| ++++.+....
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEE
Confidence 3467889999987733 344 69999999997653 2221 11112455 5666654443
No 412
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=27.51 E-value=2.5e+02 Score=31.43 Aligned_cols=75 Identities=11% Similarity=0.093 Sum_probs=44.7
Q ss_pred eCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEec------cCCceeEEEec--------------CCCE
Q 006939 29 AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV------GWSRLSDLNVH--------------EGKL 87 (625)
Q Consensus 29 l~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~------~~s~v~~l~~~--------------dg~l 87 (625)
+......+.+|+.+|++++.+....- .|.++|+..+..++.+.+ +|-.+..-.-. .-.+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 33344567889999998877664222 799999987766554422 22111110000 0113
Q ss_pred EEEeeCCCeEEEEecc
Q 006939 88 LGCSYNQSCVGVWVVD 103 (625)
Q Consensus 88 L~sg~~Dg~V~vWdv~ 103 (625)
++-+-.-|.|-||.++
T Consensus 383 vIyaprRg~lEvW~~~ 398 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMR 398 (415)
T ss_pred EEEeccCCeEEEEecC
Confidence 3566677899999987
No 413
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=27.12 E-value=2e+02 Score=26.87 Aligned_cols=83 Identities=19% Similarity=0.093 Sum_probs=38.7
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHhhccCCCcccCccHHHHHHHHHHHHHHHHHHH---hhhhhhhhhCCchhHH
Q 006939 537 LESDMDRHLSISLDILLKLVRTFGSMIYSAISASTSVGVDIEAEQRIERCNRCFIELEKVK---CCLPTLMRRGGSVAKS 613 (625)
Q Consensus 537 L~Sk~E~~v~~al~~l~~i~~~F~~~I~~~~~~~~~~gVDl~~EeR~~kc~~c~~~L~~i~---~~l~~l~~~~g~~g~~ 613 (625)
|.+.|..|+...-+.+..==......|++.=..- ..+.-...||.++-.+...+|.+|. ..|..++.--..+-..
T Consensus 32 Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~--~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ 109 (131)
T PF10158_consen 32 LCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEI--AKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPS 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666766666665554444444444422110 1122334555555555544444444 4444444433344444
Q ss_pred HHHHHHHh
Q 006939 614 AQELNLAL 621 (625)
Q Consensus 614 a~el~~~l 621 (625)
...||.+|
T Consensus 110 ie~LN~~L 117 (131)
T PF10158_consen 110 IETLNEIL 117 (131)
T ss_pred HHHHHhhC
Confidence 44444443
No 414
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=27.10 E-value=1.4e+02 Score=19.83 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEE
Q 006939 5 FHFSGSADRTVKFWDLETFELIGS 28 (625)
Q Consensus 5 lLASGS~D~tVkIWDL~tg~~i~t 28 (625)
+++.++.++.+..+|..+|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 566778899999999998887654
No 415
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=27.03 E-value=7.7e+02 Score=27.29 Aligned_cols=75 Identities=16% Similarity=0.084 Sum_probs=47.2
Q ss_pred eCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEec--------cCCceeEEEe-----c-CC---CEEEE
Q 006939 29 AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV--------GWSRLSDLNV-----H-EG---KLLGC 90 (625)
Q Consensus 29 l~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~--------~~s~v~~l~~-----~-dg---~lL~s 90 (625)
+....+.|.+++.+ |-.+++.|..+ .+.|.|++.-..+..-.. ....+..+.| . |+ -.|++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 34457899999987 54588888887 999999987665543221 1223344444 2 33 35789
Q ss_pred eeCCCeEEEEeccC
Q 006939 91 SYNQSCVGVWVVDI 104 (625)
Q Consensus 91 g~~Dg~V~vWdv~~ 104 (625)
|.+.|.+.+|.+..
T Consensus 161 GTn~G~v~~fkIlp 174 (395)
T PF08596_consen 161 GTNSGNVLTFKILP 174 (395)
T ss_dssp EETTSEEEEEEEEE
T ss_pred EeCCCCEEEEEEec
Confidence 99999999998763
No 416
>PRK10115 protease 2; Provisional
Probab=26.88 E-value=7.7e+02 Score=29.37 Aligned_cols=101 Identities=9% Similarity=-0.080 Sum_probs=52.7
Q ss_pred CCCCEEEEEe-----CCCeEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeC------C-cEEEEeCCCCe--e
Q 006939 1 MSGYFHFSGS-----ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH------E-SLKVFSWEPIR--C 66 (625)
Q Consensus 1 PdG~lLASGS-----~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~------D-sIrVWdl~sg~--~ 66 (625)
|||++||-+. ...++++-|+.+|..+...-... -..++|.+|+..|+-... . .|..|++.++. -
T Consensus 136 pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d 213 (686)
T PRK10115 136 PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQD 213 (686)
T ss_pred CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHC
Confidence 6788776543 23357788888776432211111 146899999886654322 1 46677777662 2
Q ss_pred EEEEec--cCCceeEEEecCCCEEEEe---eCCCeEEEEecc
Q 006939 67 HDAVDV--GWSRLSDLNVHEGKLLGCS---YNQSCVGVWVVD 103 (625)
Q Consensus 67 i~t~~~--~~s~v~~l~~~dg~lL~sg---~~Dg~V~vWdv~ 103 (625)
...+.. +...+......++++++.. ..++.+.+|+.+
T Consensus 214 ~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 214 ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 222221 1111222222366655333 333567777754
No 417
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=26.80 E-value=1.5e+02 Score=28.01 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=53.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcccccchhhHHhhHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 006939 494 AISAMQKMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAIS 568 (625)
Q Consensus 494 ai~~~~~~~D~~VlvD~L~~l~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~v~~al~~l~~i~~~F~~~I~~~~~ 568 (625)
|-+......|+++..|+-..++... +-.-..+-.|.+-|+++...-+.-||.+|..++++.|..++..+.
T Consensus 8 ATse~l~~~dw~~il~icD~I~~~~-----~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva 77 (144)
T cd03568 8 ATDEKLTSENWGLILDVCDKVKSDE-----NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVA 77 (144)
T ss_pred HcCccCCCcCHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHh
Confidence 3333344578888888887777653 235677778888899999888889999999999999998887653
No 418
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=26.62 E-value=3.5e+02 Score=31.23 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=32.1
Q ss_pred EEEEEeCC-cEEEEeCCCCeeEEEEeccCCceeEEEe-cCCCEEEEeeCCCeEEEEeccC
Q 006939 47 TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 104 (625)
Q Consensus 47 ~LvSgs~D-sIrVWdl~sg~~i~t~~~~~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~~ 104 (625)
+++.|+.. .|++||--..+....+..-...+..+.+ .+|+++++.+. +.+.+-|+.+
T Consensus 575 yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 575 YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 55666665 6777774332222222222333444444 57888887777 4677777763
No 419
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=26.57 E-value=3e+02 Score=26.45 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcccCccHHHHHHHHHHHHHHHHHHHhhhhhh
Q 006939 545 LSISLDILLKLVRTFGSMIYSAISASTSVGVDIEAEQRIERCNRCFIELEKVKCCLPTL 603 (625)
Q Consensus 545 v~~al~~l~~i~~~F~~~I~~~~~~~~~~gVDl~~EeR~~kc~~c~~~L~~i~~~l~~l 603 (625)
...|.+++..|+..+-.+.......-.+.|+-=++.--..||.+..++|+.|+..+++|
T Consensus 6 cr~GQEtVQdIvsrt~elF~~lk~~QlPng~t~~~~~aqdr~~kl~e~lr~i~~LFkkL 64 (150)
T PF11315_consen 6 CRIGQETVQDIVSRTQELFQALKNPQLPNGSTQQQNMAQDRRNKLQEQLRTIKVLFKKL 64 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999998865444444455666666666778889999999998887776
No 420
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=26.57 E-value=1.5e+02 Score=27.80 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=47.7
Q ss_pred HhcCCchhHHHHHHHHHhcccccchhhHHhhHHHHHHhhccCCchhH-HHHHHHHHHHHHHHHHHHHHhhc
Q 006939 499 QKMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHL-SISLDILLKLVRTFGSMIYSAIS 568 (625)
Q Consensus 499 ~~~~D~~VlvD~L~~l~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~v-~~al~~l~~i~~~F~~~I~~~~~ 568 (625)
....|++...|+-..|+.+. +-+-+.+-.|.+=|++....|+ .-||..|..++++.|..++..+.
T Consensus 14 l~~~dw~~ileicD~In~~~-----~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eia 79 (141)
T cd03565 14 LQSEDWGLNMEICDIINETE-----DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVA 79 (141)
T ss_pred CCCcCHHHHHHHHHHHhCCC-----CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 44578888888888777643 3466677777777775445554 45999999999999998886553
No 421
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=26.26 E-value=40 Score=24.19 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHHH
Q 006939 532 LLTGLLESDMDRHLSISLDILLKLVR 557 (625)
Q Consensus 532 ~i~~LL~Sk~E~~v~~al~~l~~i~~ 557 (625)
+.=.|+.|++..++.-|+.+|..|++
T Consensus 7 yAw~Lv~S~~~~d~~~Gi~lLe~l~~ 32 (35)
T PF14852_consen 7 YAWGLVKSNNREDQQEGIALLEELYR 32 (35)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 34568999999999999999998864
No 422
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=26.12 E-value=2.4e+02 Score=32.84 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=52.7
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCeEEEE--eCCCCCCeEEEEEcCCCCEEEEEeCC-c-----EEEEeCCCCeeE
Q 006939 2 SGYFHFSGSAD------RTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHE-S-----LKVFSWEPIRCH 67 (625)
Q Consensus 2 dG~lLASGS~D------~tVkIWDL~tg~~i~t--l~~h~~~V~sv~fsPdg~~LvSgs~D-s-----IrVWdl~sg~~i 67 (625)
+|++.++|+.| .++-.||..+.+-... +...........+ +|.+.+.||.| . +-.||..+.+..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence 57788999999 3567788877763321 2211122222222 67778888776 2 556665554432
Q ss_pred EEEeccCC-ceeEEEecCCCEEEEeeCCC------eEEEEecc
Q 006939 68 DAVDVGWS-RLSDLNVHEGKLLGCSYNQS------CVGVWVVD 103 (625)
Q Consensus 68 ~t~~~~~s-~v~~l~~~dg~lL~sg~~Dg------~V~vWdv~ 103 (625)
..-..... ........+|++.++||.++ .|..||..
T Consensus 410 ~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 410 PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC
Confidence 21111110 00112225788888888655 44555554
No 423
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=26.09 E-value=3.2e+02 Score=28.52 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=61.2
Q ss_pred hhcCCHHHHHHHHHhcCCchhHHHHHHHHHhcc-----cc-cchhhHHhhHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Q 006939 486 WERNDVKGAISAMQKMADHTVLADVMSIVVEKI-----EI-VTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTF 559 (625)
Q Consensus 486 W~~~dik~ai~~~~~~~D~~VlvD~L~~l~~~~-----~~-~tLd~c~~lLP~i~~LL~Sk~E~~v~~al~~l~~i~~~F 559 (625)
-.+++...|++.+.++....=..-+|-.|.... .. ..-.....+||.+-.+|+. |..|..+-...+|++=-.+
T Consensus 93 L~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~-f~~~l~Ivv~C~RKtE~~~ 171 (258)
T PF07064_consen 93 LRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQE-FPEYLEIVVNCARKTEVRY 171 (258)
T ss_pred HhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHc-CcchHHHHHHHHHhhHHHH
Confidence 355556678888888877776666666554321 10 0004455688999999988 7889999999999999999
Q ss_pred HHHHHHhhccC
Q 006939 560 GSMIYSAISAS 570 (625)
Q Consensus 560 ~~~I~~~~~~~ 570 (625)
|+.+.+.+..|
T Consensus 172 W~~LF~~lg~P 182 (258)
T PF07064_consen 172 WPYLFDYLGSP 182 (258)
T ss_pred HHHHHHhcCCH
Confidence 99999988544
No 424
>PRK13616 lipoprotein LpqB; Provisional
Probab=26.08 E-value=6.4e+02 Score=29.54 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=47.9
Q ss_pred CCCCEEEEEe------CCCeEEEEECCC-CeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-c-EEEEeCCCCeeEEEE-
Q 006939 1 MSGYFHFSGS------ADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-S-LKVFSWEPIRCHDAV- 70 (625)
Q Consensus 1 PdG~lLASGS------~D~tVkIWDL~t-g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-s-IrVWdl~sg~~i~t~- 70 (625)
|||+.+|-.- .|+.-.||=... +.......+. ....-.|+|||.++.....+ . +++.+......+..+
T Consensus 359 pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~ 436 (591)
T PRK13616 359 RSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTP 436 (591)
T ss_pred CCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEe
Confidence 5777765554 354445553322 2222222332 36778899998877665433 2 333332111111111
Q ss_pred -ecc------CCceeEEEe-cCCCEEEEeeCCCeEEE
Q 006939 71 -DVG------WSRLSDLNV-HEGKLLGCSYNQSCVGV 99 (625)
Q Consensus 71 -~~~------~s~v~~l~~-~dg~lL~sg~~Dg~V~v 99 (625)
..+ ...+..+.+ +||..++.-.. +.|.+
T Consensus 437 vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~-g~v~V 472 (591)
T PRK13616 437 VDASAVASRVPGPISELQLSRDGVRAAMIIG-GKVYL 472 (591)
T ss_pred ccCchhhhccCCCcCeEEECCCCCEEEEEEC-CEEEE
Confidence 111 134777877 79988766543 54444
No 425
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=25.65 E-value=2.1e+02 Score=31.15 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=40.8
Q ss_pred eEEEEECCCCeEEEEeCCCCCCeEEEEEcCCCC-EEEEEeC-C-cEEEEeCCCCeeEEEEe
Q 006939 14 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TLLCGLH-E-SLKVFSWEPIRCHDAVD 71 (625)
Q Consensus 14 tVkIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~-~LvSgs~-D-sIrVWdl~sg~~i~t~~ 71 (625)
.|.+||+.+++.+..+... ..+.+|..+.|.. +|+.... + .|.|||..+|+.+..+.
T Consensus 270 eVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 4777899999999887643 3467888888765 5554433 4 89999999999988775
No 426
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=25.61 E-value=5.8e+02 Score=24.14 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=54.6
Q ss_pred CEEEEEeCCCeEEEEECCCCe--------EEEEeCCCCCCeEEEE---EcC--CCCEEEEEeCCcEEEEeCCCCeeEEEE
Q 006939 4 YFHFSGSADRTVKFWDLETFE--------LIGSAGPETSGVRCLT---FNP--DGRTLLCGLHESLKVFSWEPIRCHDAV 70 (625)
Q Consensus 4 ~lLASGS~D~tVkIWDL~tg~--------~i~tl~~h~~~V~sv~---fsP--dg~~LvSgs~DsIrVWdl~sg~~i~t~ 70 (625)
.-|+.+..-+.|.|++..... .+..+.- ...|++++ |.| +...|+-|+...|.+||++...-+..-
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyk 89 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYK 89 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhh
Confidence 457888888899999876432 2333322 34566664 433 246788888889999999754432111
Q ss_pred eccCCceeEEEe-----cCCCEEEEeeCCCeEEEEecc
Q 006939 71 DVGWSRLSDLNV-----HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 71 ~~~~s~v~~l~~-----~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+. ..+..+.+ ....++++|++ -.|.-||.+
T Consensus 90 e~~-DGvn~i~~g~~~~~~~~l~ivGGn-csi~Gfd~~ 125 (136)
T PF14781_consen 90 EVP-DGVNAIVIGKLGDIPSPLVIVGGN-CSIQGFDYE 125 (136)
T ss_pred hCc-cceeEEEEEecCCCCCcEEEECce-EEEEEeCCC
Confidence 111 11222222 24556666655 456666554
No 427
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.47 E-value=5.5e+02 Score=27.57 Aligned_cols=52 Identities=23% Similarity=0.401 Sum_probs=39.5
Q ss_pred CCCCEEEEEeCC-----CeEEEEECCC-CeEEEEeCCCCCCeEEEEEcCCCCEEEEEe
Q 006939 1 MSGYFHFSGSAD-----RTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGRTLLCGL 52 (625)
Q Consensus 1 PdG~lLASGS~D-----~tVkIWDL~t-g~~i~tl~~h~~~V~sv~fsPdg~~LvSgs 52 (625)
|||.+|...=.| |.|-|||.+. ++-+..+..|.-+-..+.|.+||+.++.+.
T Consensus 123 ~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 123 PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 678888664333 4678999863 345777888888899999999999988654
No 428
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=24.88 E-value=5.2e+02 Score=30.12 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=54.2
Q ss_pred CCEEEEEeCC------CeEEEEECCCCeEEEEeCC-CCCCeEEEEEcCCCCEEEEEeCC-------cEEEEeCCCCeeEE
Q 006939 3 GYFHFSGSAD------RTVKFWDLETFELIGSAGP-ETSGVRCLTFNPDGRTLLCGLHE-------SLKVFSWEPIRCHD 68 (625)
Q Consensus 3 G~lLASGS~D------~tVkIWDL~tg~~i~tl~~-h~~~V~sv~fsPdg~~LvSgs~D-------sIrVWdl~sg~~i~ 68 (625)
+.+++.|+.+ ..+..||..+++-.....- +...-.++++. ++.++++||.| ++.+||........
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 5677888877 4678899887754332211 22223344444 45566677655 25566666554322
Q ss_pred EEeccCCce-eEEEecCCCEEEEeeCCC-----eEEEEecc
Q 006939 69 AVDVGWSRL-SDLNVHEGKLLGCSYNQS-----CVGVWVVD 103 (625)
Q Consensus 69 t~~~~~s~v-~~l~~~dg~lL~sg~~Dg-----~V~vWdv~ 103 (625)
.-....... ..+...+|.+.+.|+.|| .|-.||..
T Consensus 364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred cCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence 111111111 112235788889999886 45566655
No 429
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.66 E-value=9e+02 Score=25.33 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=46.0
Q ss_pred EEEeCCCeEEEEE--CCCCeE-----EEEeCC---CCC-CeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccC
Q 006939 7 FSGSADRTVKFWD--LETFEL-----IGSAGP---ETS-GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW 74 (625)
Q Consensus 7 ASGS~D~tVkIWD--L~tg~~-----i~tl~~---h~~-~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~ 74 (625)
..-+.+.+|.-|| ..+|.. +..++. ... -.-.++...+|.+++++-.+ +|..+|..+|+.+..+....
T Consensus 174 ~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt 253 (310)
T KOG4499|consen 174 YIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT 253 (310)
T ss_pred EEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC
Confidence 4556677787777 566553 222221 100 01122334466676666666 88888999999888777766
Q ss_pred CceeEEEe
Q 006939 75 SRLSDLNV 82 (625)
Q Consensus 75 s~v~~l~~ 82 (625)
.++.+.+|
T Consensus 254 ~qitsccF 261 (310)
T KOG4499|consen 254 PQITSCCF 261 (310)
T ss_pred CceEEEEe
Confidence 66766666
No 430
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.39 E-value=3e+02 Score=28.69 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=36.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeEEEEEc
Q 006939 2 SGYFHFSGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN 42 (625)
Q Consensus 2 dG~lLASGS~D~tVkIWDL~tg~~i~tl~~h~~~V~sv~fs 42 (625)
+|++.++.-.-++|...|..+|+.+..+.--+..|.|+||-
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 47788888888999999999999999888778899999995
No 431
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.25 E-value=3.6e+02 Score=28.91 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=53.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEeccC-CceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 30 GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW-SRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 30 ~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~~~~-s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+.+..|.++.|+|+.+.|++-... .-.||=-..|..++++...+ .-.-.|.+ .+++++++--.++.+.++.++
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 4455679999999999999887766 66666666788888775432 22222333 578888888888888888777
No 432
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=22.09 E-value=8.9e+02 Score=25.03 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=47.3
Q ss_pred EeCCCCCCeEEEEEcCCCCEEEEEeCC--cEEEEeCCCCeeEEEEecc-CCceeEEEe-cCCCEEEEeeCCCeEEEEecc
Q 006939 28 SAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVG-WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 103 (625)
Q Consensus 28 tl~~h~~~V~sv~fsPdg~~LvSgs~D--sIrVWdl~sg~~i~t~~~~-~s~v~~l~~-~dg~lL~sg~~Dg~V~vWdv~ 103 (625)
.+.+-...+..+.|+|+...|++-.+. .|.-++.. |+.++.+... +.-.-.+.+ .++.++++.-.++.+.+++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 344555669999999987766665554 67777764 7788777654 344556666 567777777678888888875
No 433
>PF00502 Phycobilisome: Phycobilisome protein; InterPro: IPR012128 Cyanobacteria and red algae harvest light through water-soluble complexes, called phycobilisomes, which are attached to the outer face of the thylakoid membrane []. These complexes are capable of transferring the absorbed energy to the photosynthetic reaction centre with greater than 95% efficiency. Phycobilisomes contain various photosynthetic light harvesting proteins known as biliproteins, and linker proteins which help assemble the structure. The two main structural elements of the complex are a core located near the photosynthetic reaction centre, and rods attached to this core. Allophycocyanin is the major component of the core, while the rods contain phycocyanins, phycoerythrins and linker proteins. The rod biliproteins harvest photons, with the excitation energy being passed through the rods into the allophycocyanin in the core. Other core biliproteins subsequently pass this energy to chlorophyll within the thylakoid membrane. This entry represents the alpha and beta subunits found in biliproteins from cyanobacteria and red algae. Structural studies indicate that the basic structural unit of most biliproteins is a heterodimer composed of these alpha and beta subunits [, , , ]. The full protein is a ring-like trimer assembly of these heterodimers. Each subunit of the heterodimer has eight helices and binds chromophores through thioester bonds formed at particular cysteine residues. These chromophores, also known as bilins, are open-chain tetrapyrroles whose number and type vary with the particular biliprotein eg R-phyocerythrin binds five phycoerythrobilins per heterodimer, while allophycocyanin binds two phycocyanobilins per heterodimer.; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2VML_I 2VJR_A 1KTP_B 3L0F_B 1JBO_B 3KVS_B 1PHN_B 3BRP_B 2C7K_B 2C7L_B ....
Probab=21.93 E-value=7e+02 Score=23.76 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=37.9
Q ss_pred chhHHHHHHHH-Hhcccccc----------hhhHHh----hHHHHHHhhccCCchhHH-HHHHHHHHHHHHHHHHH
Q 006939 504 HTVLADVMSIV-VEKIEIVT----------LDICSC----LLPLLTGLLESDMDRHLS-ISLDILLKLVRTFGSMI 563 (625)
Q Consensus 504 ~~VlvD~L~~l-~~~~~~~t----------Ld~c~~----lLP~i~~LL~Sk~E~~v~-~al~~l~~i~~~F~~~I 563 (625)
..++-+....+ .+.|++.. .+.|.- +|-++.-.+--.....+. .+|.+++.|++.|+--+
T Consensus 44 ~~IV~~A~~~l~~~~P~l~~~gg~~y~~~~~~~C~RD~~~~LR~i~ya~l~gd~~~l~~~~l~~l~ei~~al~vp~ 119 (157)
T PF00502_consen 44 SEIVDQAAQKLFEKYPDLTQPGGNLYPSRRREACWRDIWHYLRYITYAMLAGDTDPLDERGLNGLREIYRALGVPI 119 (157)
T ss_dssp HHHHHHHHHHHHHHSGGGGSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHTTTTHHHHHHHHT--H
T ss_pred HHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHcCCc
Confidence 34455555444 33344444 466754 777777777777777776 77888999998886443
No 434
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=21.89 E-value=1.1e+03 Score=26.05 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEEe
Q 006939 34 SGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVD 71 (625)
Q Consensus 34 ~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~~ 71 (625)
+++..++++|+|++++.-..+ .+.|.+..-.+++..+.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 579999999999988776665 78887765555544443
No 435
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=21.35 E-value=8.8e+02 Score=26.93 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=35.3
Q ss_pred CCC-CEEEEEeCCCeE--EEEECCCCeEEEEeCCCCCCeEEEEEcCCCCEEEEEeCC-cEEEEeCCCCeeEEEE
Q 006939 1 MSG-YFHFSGSADRTV--KFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV 70 (625)
Q Consensus 1 PdG-~lLASGS~D~tV--kIWDL~tg~~i~tl~~h~~~V~sv~fsPdg~~LvSgs~D-sIrVWdl~sg~~i~t~ 70 (625)
+|| ++|+.+..|+.- .+-||.+++....-.+-........++|+.+.++-...+ .|+-.|+.+.+...++
T Consensus 45 ~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 45 DDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 356 445555556654 455888887654333322223345567888876544444 7888899887654433
No 436
>PHA02939 hypothetical protein; Provisional
Probab=21.00 E-value=6.6e+02 Score=23.16 Aligned_cols=86 Identities=22% Similarity=0.201 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhc--ccccchhhHHhhHHH--------HHHhhcc----CCchhHHHHHHHH-HHHHHHHHHHHHHhhccC
Q 006939 506 VLADVMSIVVEK--IEIVTLDICSCLLPL--------LTGLLES----DMDRHLSISLDIL-LKLVRTFGSMIYSAISAS 570 (625)
Q Consensus 506 VlvD~L~~l~~~--~~~~tLd~c~~lLP~--------i~~LL~S----k~E~~v~~al~~l-~~i~~~F~~~I~~~~~~~ 570 (625)
+..|+.....+. ...|-+|..-+++|- +..|..- .-..|+..-|.-| .++-+.|+.++..-
T Consensus 40 if~d~~~~~de~c~~~kwE~df~rD~ipe~iW~vRkaV~~l~DP~st~~qrEyae~~l~~lle~~~r~f~~Ll~~c---- 115 (144)
T PHA02939 40 IFSDFARCDDEGCPRSKWESDFLRDLIPEEIWYVRKAVKELYDPESTDDQREYAEHRLKGLLELLERNFNQLLEFC---- 115 (144)
T ss_pred HHHHHhhccccccchHhhHHHHHHHHhhHHHHHHHHHHHHHhCCccchhHHHHHHhhHHHHHHHHHHHHHHHHHHH----
Confidence 444444433332 267888888887775 2333321 1123666666544 44555666665532
Q ss_pred CCcccCccHHHHHHHHHHHHHHHHHHHhhhhh
Q 006939 571 TSVGVDIEAEQRIERCNRCFIELEKVKCCLPT 602 (625)
Q Consensus 571 ~~~gVDl~~EeR~~kc~~c~~~L~~i~~~l~~ 602 (625)
..|+|.+|+-+..++|.+++.++.+
T Consensus 116 -------i~ekRreKYLkLiEEFnKvKEMIeK 140 (144)
T PHA02939 116 -------IDEKRREKYLKLIEEFNKVKEMIEK 140 (144)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2689999999999999999987654
No 437
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=20.51 E-value=1.4e+02 Score=28.21 Aligned_cols=74 Identities=19% Similarity=0.376 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cc-------CCCcccC-ccHHHHHHHHH---HH---HHHHHHHHhhhhhhhhhCCchh
Q 006939 547 ISLDILLKLVRTFGSMIYSAI-SA-------STSVGVD-IEAEQRIERCN---RC---FIELEKVKCCLPTLMRRGGSVA 611 (625)
Q Consensus 547 ~al~~l~~i~~~F~~~I~~~~-~~-------~~~~gVD-l~~EeR~~kc~---~c---~~~L~~i~~~l~~l~~~~g~~g 611 (625)
.||.++..|++-|...+.-.. .. -.++|-. .+.-.++.+|. .| .....+|+..-.+|... .+=
T Consensus 42 ~gC~~l~ell~FYLd~V~p~a~~~~~~~k~~i~Sl~~~f~~lk~~l~~C~~~~~Ce~~~~a~~qi~~~f~kl~~k--G~~ 119 (137)
T smart00188 42 LGCQALSEMIQFYLEEVMPQAENHGPDIKEHVNSLGEKLKTLRLRLRRCHRFLPCENKSKAVEQVKNAFNKLQEK--GVY 119 (137)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHCccccCccchhHHHHHHHHHHHHHHHh--HHH
Confidence 466667777777766444111 11 1112211 22245677775 34 33355666666666632 255
Q ss_pred HHHHHHHHHhh
Q 006939 612 KSAQELNLALQ 622 (625)
Q Consensus 612 ~~a~el~~~l~ 622 (625)
++.-||.++|+
T Consensus 120 KAmgElDill~ 130 (137)
T smart00188 120 KAMSEFDIFIN 130 (137)
T ss_pred HHHHHHHHHHH
Confidence 78889988876
No 438
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=20.23 E-value=2.2e+02 Score=26.34 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=52.1
Q ss_pred HhcCCchhHHHHHHHHHhcccccchhhHHhhHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 006939 499 QKMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAIS 568 (625)
Q Consensus 499 ~~~~D~~VlvD~L~~l~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~v~~al~~l~~i~~~F~~~I~~~~~ 568 (625)
....|.+...++-..|+... +..-..+-.|.+=|+++...-+.-||..|..++++.|+.++..+.
T Consensus 13 l~~~dw~~~l~icD~i~~~~-----~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~ 77 (133)
T smart00288 13 LLEEDWELILEICDLINSTP-----DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVA 77 (133)
T ss_pred CCCcCHHHHHHHHHHHhCCC-----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 34578888888777776662 456777888899999999999999999999999999998776553
Done!