Query 006940
Match_columns 624
No_of_seqs 520 out of 3969
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 16:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 3E-107 7E-112 916.5 56.0 610 15-624 13-623 (623)
2 PF12819 Malectin_like: Carboh 100.0 2.6E-63 5.6E-68 521.3 31.9 323 30-364 1-347 (347)
3 PLN03150 hypothetical protein; 99.8 2.7E-20 5.8E-25 210.7 20.1 89 445-534 419-507 (623)
4 PF11721 Malectin: Di-glucose 99.8 8.3E-21 1.8E-25 180.0 3.0 142 194-347 1-151 (174)
5 PF11721 Malectin: Di-glucose 99.5 4.6E-14 9.9E-19 133.9 8.3 134 28-170 3-174 (174)
6 PLN00113 leucine-rich repeat r 99.5 1.2E-13 2.6E-18 166.1 12.4 110 421-531 476-585 (968)
7 PLN00113 leucine-rich repeat r 99.5 2.6E-13 5.6E-18 163.2 12.8 149 371-529 26-200 (968)
8 KOG0617 Ras suppressor protein 98.9 3.2E-10 7E-15 103.3 1.1 81 422-505 35-115 (264)
9 PF12819 Malectin_like: Carboh 98.8 7.4E-09 1.6E-13 109.3 9.1 158 198-369 1-166 (347)
10 KOG0617 Ras suppressor protein 98.7 1.3E-09 2.9E-14 99.3 -0.6 103 422-528 58-184 (264)
11 KOG4194 Membrane glycoprotein 98.7 3.4E-09 7.4E-14 112.8 -0.4 106 422-528 319-427 (873)
12 PF13855 LRR_8: Leucine rich r 98.5 4.2E-08 9.2E-13 76.0 2.9 60 445-504 2-61 (61)
13 KOG0444 Cytoskeletal regulator 98.5 1.1E-08 2.3E-13 109.6 -0.8 103 422-528 80-184 (1255)
14 KOG0472 Leucine-rich repeat pr 98.5 1.7E-08 3.7E-13 103.3 0.6 105 422-530 437-541 (565)
15 PF14580 LRR_9: Leucine-rich r 98.5 8.4E-08 1.8E-12 90.6 3.9 102 421-528 20-124 (175)
16 KOG0618 Serine/threonine phosp 98.5 6E-08 1.3E-12 108.7 2.9 104 421-529 384-488 (1081)
17 KOG0444 Cytoskeletal regulator 98.4 3.4E-08 7.3E-13 105.9 -0.7 110 421-534 269-379 (1255)
18 KOG3593 Predicted receptor-lik 98.4 2.4E-07 5.2E-12 90.5 4.6 107 253-364 107-228 (355)
19 KOG4194 Membrane glycoprotein 98.3 3E-07 6.4E-12 98.4 4.0 107 421-528 126-232 (873)
20 PF13855 LRR_8: Leucine rich r 98.3 3.3E-07 7.2E-12 71.0 3.2 59 422-480 3-61 (61)
21 KOG0472 Leucine-rich repeat pr 98.3 8E-08 1.7E-12 98.5 -2.4 97 425-528 211-308 (565)
22 KOG4237 Extracellular matrix p 98.2 3.9E-07 8.5E-12 93.4 0.8 94 439-533 269-362 (498)
23 KOG0532 Leucine-rich repeat (L 98.1 4.7E-07 1E-11 96.8 0.3 114 422-543 145-258 (722)
24 PRK15387 E3 ubiquitin-protein 98.0 7.4E-06 1.6E-10 94.1 6.6 77 445-531 383-459 (788)
25 PF14580 LRR_9: Leucine-rich r 98.0 6.4E-06 1.4E-10 77.9 4.5 85 439-528 14-99 (175)
26 KOG0618 Serine/threonine phosp 97.9 2E-06 4.3E-11 96.8 0.3 90 421-514 46-135 (1081)
27 KOG4237 Extracellular matrix p 97.9 1.5E-06 3.2E-11 89.3 -1.3 118 408-527 50-174 (498)
28 PLN03210 Resistant to P. syrin 97.9 2.5E-05 5.3E-10 95.6 8.9 106 421-532 779-884 (1153)
29 PRK15370 E3 ubiquitin-protein 97.9 1.9E-05 4.1E-10 91.1 6.9 94 422-528 222-315 (754)
30 PLN03210 Resistant to P. syrin 97.8 3.9E-05 8.4E-10 93.9 8.6 106 421-530 612-717 (1153)
31 KOG4579 Leucine-rich repeat (L 97.8 2.2E-06 4.7E-11 76.0 -1.7 105 421-530 54-159 (177)
32 KOG1259 Nischarin, modulator o 97.8 3.4E-06 7.4E-11 83.7 -0.5 100 422-528 309-410 (490)
33 cd00116 LRR_RI Leucine-rich re 97.8 6.4E-06 1.4E-10 85.9 0.6 107 422-528 139-261 (319)
34 PRK15370 E3 ubiquitin-protein 97.8 3.4E-05 7.4E-10 89.0 6.5 76 444-529 325-400 (754)
35 cd00116 LRR_RI Leucine-rich re 97.8 5.7E-06 1.2E-10 86.3 0.1 84 422-505 110-206 (319)
36 PRK15387 E3 ubiquitin-protein 97.7 2E-05 4.4E-10 90.5 3.8 84 421-513 383-466 (788)
37 PF12799 LRR_4: Leucine Rich r 97.7 3E-05 6.6E-10 55.6 3.1 36 469-505 2-37 (44)
38 KOG0532 Leucine-rich repeat (L 97.7 1.9E-06 4E-11 92.3 -4.6 100 422-528 123-222 (722)
39 KOG1859 Leucine-rich repeat pr 97.7 2.6E-06 5.5E-11 93.5 -4.6 106 421-532 188-294 (1096)
40 COG4886 Leucine-rich repeat (L 97.6 2.9E-05 6.3E-10 83.8 3.1 103 422-529 142-244 (394)
41 KOG1259 Nischarin, modulator o 97.6 2.5E-05 5.4E-10 77.7 1.3 100 422-528 286-385 (490)
42 KOG4579 Leucine-rich repeat (L 97.5 4.9E-06 1.1E-10 73.8 -3.6 100 424-528 31-134 (177)
43 PF12799 LRR_4: Leucine Rich r 97.5 4.1E-05 8.9E-10 54.9 1.4 37 444-481 1-37 (44)
44 COG4886 Leucine-rich repeat (L 97.3 9.3E-05 2E-09 79.9 1.1 102 422-528 165-266 (394)
45 KOG4658 Apoptotic ATPase [Sign 97.1 0.00022 4.8E-09 83.8 1.7 102 422-525 547-650 (889)
46 KOG1859 Leucine-rich repeat pr 96.6 0.00017 3.6E-09 79.7 -3.8 95 426-528 170-265 (1096)
47 KOG4658 Apoptotic ATPase [Sign 96.5 0.0014 3E-08 77.2 2.5 82 421-503 572-653 (889)
48 KOG3207 Beta-tubulin folding c 96.3 0.0013 2.7E-08 69.1 0.7 81 423-504 225-313 (505)
49 KOG0531 Protein phosphatase 1, 96.3 0.0017 3.8E-08 70.6 1.8 80 422-506 97-176 (414)
50 PF08263 LRRNT_2: Leucine rich 96.3 0.0045 9.8E-08 44.0 3.3 35 373-412 2-43 (43)
51 KOG0531 Protein phosphatase 1, 96.0 0.0021 4.6E-08 69.9 0.4 100 422-528 74-173 (414)
52 KOG2739 Leucine-rich acidic nu 95.6 0.011 2.3E-07 58.5 3.7 97 422-523 45-149 (260)
53 KOG3207 Beta-tubulin folding c 95.3 0.0066 1.4E-07 63.9 1.2 107 421-528 198-312 (505)
54 KOG1644 U2-associated snRNP A' 94.9 0.023 5E-07 54.2 3.4 56 424-481 46-101 (233)
55 PF00560 LRR_1: Leucine Rich R 94.6 0.012 2.6E-07 35.3 0.4 12 470-481 2-13 (22)
56 KOG1644 U2-associated snRNP A' 94.6 0.045 9.7E-07 52.2 4.4 82 443-528 41-124 (233)
57 KOG2982 Uncharacterized conser 94.2 0.01 2.2E-07 59.6 -0.7 73 405-480 85-158 (418)
58 PF00560 LRR_1: Leucine Rich R 94.2 0.018 4E-07 34.5 0.6 22 445-467 1-22 (22)
59 KOG2739 Leucine-rich acidic nu 94.0 0.04 8.7E-07 54.6 2.9 89 436-528 35-127 (260)
60 KOG0473 Leucine-rich repeat pr 93.6 0.0054 1.2E-07 59.5 -3.8 83 420-505 42-124 (326)
61 KOG2982 Uncharacterized conser 93.1 0.03 6.5E-07 56.4 0.4 85 421-505 72-159 (418)
62 PRK15386 type III secretion pr 92.1 0.26 5.6E-06 52.8 5.9 13 493-505 157-169 (426)
63 PRK15386 type III secretion pr 91.3 0.43 9.3E-06 51.2 6.4 11 518-528 157-167 (426)
64 KOG1909 Ran GTPase-activating 90.2 0.3 6.5E-06 50.4 3.9 84 421-504 93-197 (382)
65 PF13504 LRR_7: Leucine rich r 90.1 0.16 3.6E-06 28.3 1.1 12 470-481 3-14 (17)
66 KOG2123 Uncharacterized conser 89.7 0.035 7.6E-07 55.4 -3.1 62 422-485 43-105 (388)
67 KOG3665 ZYG-1-like serine/thre 89.7 0.17 3.8E-06 58.3 1.9 57 422-480 175-232 (699)
68 KOG0473 Leucine-rich repeat pr 88.8 0.012 2.7E-07 57.0 -6.8 87 439-529 37-123 (326)
69 PF01102 Glycophorin_A: Glycop 88.7 0.17 3.8E-06 44.5 0.8 33 544-576 62-94 (122)
70 KOG3665 ZYG-1-like serine/thre 88.4 0.22 4.7E-06 57.5 1.6 106 421-528 149-261 (699)
71 PF13504 LRR_7: Leucine rich r 88.1 0.32 6.9E-06 27.1 1.4 17 492-509 1-17 (17)
72 COG5238 RNA1 Ran GTPase-activa 86.3 0.49 1.1E-05 47.3 2.5 83 422-505 32-133 (388)
73 PF08693 SKG6: Transmembrane a 86.3 0.48 1E-05 32.8 1.6 8 550-557 16-23 (40)
74 smart00370 LRR Leucine-rich re 85.6 0.72 1.6E-05 28.5 2.1 19 492-511 2-20 (26)
75 smart00369 LRR_TYP Leucine-ric 85.6 0.72 1.6E-05 28.5 2.1 19 492-511 2-20 (26)
76 PF13306 LRR_5: Leucine rich r 85.4 1.3 2.7E-05 39.1 4.5 99 422-526 14-112 (129)
77 smart00369 LRR_TYP Leucine-ric 84.3 0.72 1.6E-05 28.5 1.7 19 467-486 1-19 (26)
78 smart00370 LRR Leucine-rich re 84.3 0.72 1.6E-05 28.5 1.7 19 467-486 1-19 (26)
79 KOG3593 Predicted receptor-lik 84.3 0.64 1.4E-05 46.5 2.2 140 27-173 61-226 (355)
80 KOG2123 Uncharacterized conser 83.6 0.068 1.5E-06 53.4 -4.8 97 422-523 21-123 (388)
81 COG5238 RNA1 Ran GTPase-activa 83.5 1.4 3.1E-05 44.1 4.2 103 421-528 93-225 (388)
82 PF04478 Mid2: Mid2 like cell 82.2 0.5 1.1E-05 43.0 0.5 18 545-562 48-65 (154)
83 KOG1909 Ran GTPase-activating 82.2 0.14 3E-06 52.8 -3.4 108 421-529 186-310 (382)
84 PF05454 DAG1: Dystroglycan (D 79.9 0.56 1.2E-05 47.8 0.0 12 591-602 190-201 (290)
85 PF13306 LRR_5: Leucine rich r 76.5 4.4 9.5E-05 35.5 4.8 85 439-527 7-91 (129)
86 PF02439 Adeno_E3_CR2: Adenovi 75.1 2.2 4.7E-05 29.1 1.7 20 549-568 6-25 (38)
87 KOG2120 SCF ubiquitin ligase, 71.9 0.14 2.9E-06 51.8 -6.7 85 421-505 186-273 (419)
88 PF02009 Rifin_STEVOR: Rifin/s 71.7 4.2 9.1E-05 41.9 3.8 24 556-579 266-289 (299)
89 TIGR00864 PCC polycystin catio 69.5 3.2 7E-05 53.9 2.8 32 474-505 1-32 (2740)
90 smart00364 LRR_BAC Leucine-ric 69.1 3.2 6.9E-05 26.0 1.4 17 469-486 3-19 (26)
91 KOG2120 SCF ubiquitin ligase, 67.9 0.33 7.2E-06 49.1 -4.9 106 421-527 235-348 (419)
92 PTZ00382 Variant-specific surf 67.2 3.5 7.5E-05 34.9 1.7 17 543-559 63-79 (96)
93 PF13516 LRR_6: Leucine Rich r 66.2 1.8 3.9E-05 26.2 -0.2 15 492-506 2-16 (24)
94 PF15102 TMEM154: TMEM154 prot 63.6 3.8 8.2E-05 37.1 1.3 10 548-557 58-67 (146)
95 PF14991 MLANA: Protein melan- 62.1 2.4 5.2E-05 36.4 -0.2 26 553-578 29-54 (118)
96 PF01299 Lamp: Lysosome-associ 61.1 3.8 8.3E-05 42.6 1.1 39 519-562 248-286 (306)
97 PTZ00046 rifin; Provisional 59.0 8.8 0.00019 40.2 3.2 23 557-579 326-348 (358)
98 TIGR01477 RIFIN variant surfac 58.1 9.4 0.0002 39.9 3.3 22 558-579 322-343 (353)
99 PF15345 TMEM51: Transmembrane 57.6 29 0.00063 34.0 6.3 30 547-576 58-87 (233)
100 PF14575 EphA2_TM: Ephrin type 56.6 4.7 0.0001 32.4 0.6 16 596-611 58-73 (75)
101 smart00365 LRR_SD22 Leucine-ri 56.0 9 0.0002 24.0 1.7 14 468-481 2-15 (26)
102 PF08374 Protocadherin: Protoc 55.8 11 0.00023 36.5 2.9 23 547-569 39-61 (221)
103 PF12273 RCR: Chitin synthesis 54.3 12 0.00026 33.5 2.9 19 561-579 11-29 (130)
104 smart00368 LRR_RI Leucine rich 53.1 10 0.00022 24.0 1.7 12 469-480 3-14 (28)
105 PHA03265 envelope glycoprotein 48.9 18 0.00038 37.5 3.4 12 305-316 189-200 (402)
106 PF01034 Syndecan: Syndecan do 48.8 5.3 0.00012 30.7 -0.2 10 549-558 12-21 (64)
107 KOG3864 Uncharacterized conser 48.2 3.2 6.9E-05 40.0 -1.8 81 421-501 102-185 (221)
108 PF07204 Orthoreo_P10: Orthore 48.2 11 0.00025 31.1 1.6 6 597-602 78-83 (98)
109 PF12877 DUF3827: Domain of un 47.9 18 0.00038 40.7 3.5 9 304-312 87-95 (684)
110 TIGR01478 STEVOR variant surfa 46.2 13 0.00027 37.6 1.9 7 568-574 280-286 (295)
111 PF02439 Adeno_E3_CR2: Adenovi 45.4 5.3 0.00012 27.3 -0.6 27 547-574 8-34 (38)
112 PTZ00370 STEVOR; Provisional 44.8 14 0.0003 37.4 1.9 7 568-574 276-282 (296)
113 PF05393 Hum_adeno_E3A: Human 41.8 23 0.0005 29.0 2.4 17 560-576 45-61 (94)
114 PF14610 DUF4448: Protein of u 39.3 17 0.00037 34.8 1.6 28 547-574 158-185 (189)
115 PF12191 stn_TNFRSF12A: Tumour 38.2 18 0.0004 31.8 1.4 15 556-570 88-102 (129)
116 KOG3763 mRNA export factor TAP 37.7 15 0.00033 40.6 1.1 62 442-507 216-285 (585)
117 PF03944 Endotoxin_C: delta en 36.8 3.2E+02 0.0069 24.7 11.4 80 91-176 48-143 (143)
118 PF12768 Rax2: Cortical protei 36.3 41 0.0009 34.4 3.9 18 541-558 222-239 (281)
119 PF06365 CD34_antigen: CD34/Po 35.5 64 0.0014 31.2 4.8 16 560-575 115-130 (202)
120 PF03422 CBM_6: Carbohydrate b 34.9 3E+02 0.0064 23.7 9.2 72 269-347 33-107 (125)
121 PF05545 FixQ: Cbb3-type cytoc 33.8 50 0.0011 23.9 3.0 7 568-574 29-35 (49)
122 PF07271 Cytadhesin_P30: Cytad 33.5 33 0.00073 34.3 2.6 8 596-603 120-127 (279)
123 PRK06764 hypothetical protein; 30.8 45 0.00097 27.1 2.4 18 85-102 74-91 (105)
124 KOG1187 Serine/threonine prote 30.3 21 0.00047 38.0 0.8 23 591-613 61-83 (361)
125 PF02480 Herpes_gE: Alphaherpe 28.6 19 0.00041 39.4 0.0 12 549-560 355-366 (439)
126 PF04689 S1FA: DNA binding pro 25.6 1.5E+02 0.0033 22.8 4.3 28 543-570 10-37 (69)
127 PF15102 TMEM154: TMEM154 prot 25.4 23 0.0005 32.2 -0.0 18 545-562 58-75 (146)
128 KOG3763 mRNA export factor TAP 23.7 35 0.00076 37.9 0.9 62 421-484 219-286 (585)
129 KOG1219 Uncharacterized conser 22.6 1.1E+02 0.0024 40.1 4.7 11 524-534 3919-3929(4289)
130 TIGR00864 PCC polycystin catio 22.3 54 0.0012 43.4 2.3 32 450-481 1-32 (2740)
131 PF03302 VSP: Giardia variant- 21.9 64 0.0014 34.9 2.5 29 542-571 363-391 (397)
132 KOG1947 Leucine rich repeat pr 21.3 54 0.0012 35.7 1.9 85 421-505 215-308 (482)
133 TIGR01167 LPXTG_anchor LPXTG-m 20.1 80 0.0017 20.6 1.8 7 567-573 26-32 (34)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-107 Score=916.46 Aligned_cols=610 Identities=80% Similarity=1.310 Sum_probs=515.9
Q ss_pred HhhcccccCCCCcEEEccCCCCCCCCCCCCceeeccCCccCCcccccCCCCCCCCCcceeeeecCCCCCCceEEeecCCC
Q 006940 15 ALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPK 94 (624)
Q Consensus 15 ~~~~~~~~~~~~~~~I~CG~~~~~~~~~~~~~w~~D~~~~~g~~~~~~~~~~~~~~y~t~R~F~~~~~~~~~Y~~~~~~~ 94 (624)
++.++.++.++++++||||+++++++|.+||+|++|..+++|.......+....++|+|+|+||...|+++||+||++++
T Consensus 13 ~~~~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~~~~~~~~~~~~~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~ 92 (623)
T PLN03150 13 AVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRPSFIAPPLKTLRYFPLSDGPENCYNINRVPK 92 (623)
T ss_pred HhhcccccCCCccEEEeCCCCCCcccCCCCCEEcCCcccccCccccccCcccccchhhccccCCcccccccceEeeecCC
Confidence 33444455678999999999987545678999999988776555544444456688999999997678899999999999
Q ss_pred ceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEEeecCCCCcccceeEEEEEEeeCCeEEEEEeeCCCCCCcEeeEEEEE
Q 006940 95 GHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQ 174 (624)
Q Consensus 95 g~y~vRl~F~~~~y~~~~~~~~Fdv~~~~~~~~~v~~~~~~~~~~~~~E~~~~~~~~~l~i~f~~~~~~~pfIsaIEl~~ 174 (624)
|+|+||+||+||+||+.++.|.|||++|++.|.+|+.+|+..+..++||++++++++.++|||++++.+.||||+||||+
T Consensus 93 g~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~iEv~~ 172 (623)
T PLN03150 93 GHYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSSHDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEILQ 172 (623)
T ss_pred CcEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCcccCCCcEEEEEEEEecCCcEEEEEecCCCCCCceeEEEEEE
Confidence 99999999999999998888999999999999999998876677899999999999999999999988999999999999
Q ss_pred cCCcccccCCCCccceeEEEEEeecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCccccccccceeccCCCCCCChH
Q 006940 175 VDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPE 254 (624)
Q Consensus 175 l~~~~y~~~~~~~~~~~l~~~~Rin~Gg~~~~~~~~~~~D~~~~dR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~ 254 (624)
+|+.+|..+.+...+.+|+++||+||||....+.+||+||+|++||+|.+|..|....+..+++...|+.+.+.++.+|+
T Consensus 173 l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~ 252 (623)
T PLN03150 173 VDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPE 252 (623)
T ss_pred cCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChH
Confidence 99999975432234678999999999998776678999999999999999876554556667777777765566777899
Q ss_pred HHHHHhhhcCCCCCccEEEeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEECCeecccCCceeeecCCceeeEEEEEE
Q 006940 255 ALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTT 334 (624)
Q Consensus 255 ~Vy~Tar~~~~~~~~lt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~ 334 (624)
.||||||++.+...+++|.|++++++.|+|||||||++......++|+|||+|||+.+++++|+...+|+.+.++++++.
T Consensus 253 ~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~ 332 (623)
T PLN03150 253 SLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKT 332 (623)
T ss_pred HHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeE
Confidence 99999999876557899999999999999999999997545567899999999999999999999888877788999988
Q ss_pred EeeeCeeEEEEeCCCCCchHHHHHHhhhhhhhhcccCChHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 006940 335 VAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFD 414 (624)
Q Consensus 335 ~~~~~~~l~i~~~~~~~~~p~lnaiEi~~~~~~~~~~~~~~~~aL~~~k~~~~~~~~~~W~~~~c~~~~~~w~gv~C~~~ 414 (624)
+.++++.++|+|+|..+++|+||||||+++...+..+.+.|+.||+.+|..+..+...+|+++||.|..++|.|+.|..+
T Consensus 333 v~~~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv~C~~~ 412 (623)
T PLN03150 333 VAVSGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFD 412 (623)
T ss_pred EeecCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcccccccceeecc
Confidence 87777889999999988889999999999998888889999999999999987664458999999988889999999754
Q ss_pred CCCceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCC
Q 006940 415 RTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494 (624)
Q Consensus 415 ~~~~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L 494 (624)
.......++.|+|++|+|+|.+|..++.|++|+.|+|++|+|.|.+|..++.|++|+.|||++|+|+|.+|+.++++++|
T Consensus 413 ~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred CCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 43334579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCCCCCCCCCCCCCCceEEEEhhhHHHHHHHHHHHHHHHHHHHh
Q 006940 495 RRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQ 574 (624)
Q Consensus 495 ~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~ 574 (624)
+.|+|++|+|+|.+|..+.....++..+++.+|+.+|+.|....|..+.....++++++++++++++++++.+++++||+
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~r~ 572 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSVGAKIGIAFGVSVAFLFLVICAMCWWKRRQ 572 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcccCCCceEEEEEhHHHHHHHHHHHHHhhheeehh
Confidence 99999999999999999887656778899999999999988888976656666677666666555554555555555555
Q ss_pred hHHHHhhhhccCCcchhhccccchhhhhhcccC-CCCCccccccCCCCCCC
Q 006940 575 NILRAQQIAARGAPYAKARTHLSHDIQLARHYN-HHGNARTAAENGPSLLS 624 (624)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~r~~~~~ei~~at~~f-~~~~~~~~~~~~~~~~~ 624 (624)
+..+.+....+..+..+.|...-+++|.|..+. +++.+++++|+||.+++
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (623)
T PLN03150 573 NILRAQRIAAREAPYAKARTHFSRDVQMTRHHRQNHGSARTAAENGPSLLS 623 (623)
T ss_pred hhcchhhhhcccCcchhcccceeeeccchhhhccccccccccccCCCcCCC
Confidence 443332212333444455555677888887664 67889999999999875
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=2.6e-63 Score=521.33 Aligned_cols=323 Identities=29% Similarity=0.480 Sum_probs=255.8
Q ss_pred EccCCCCCC--C-CCCCCceeeccCCccC-CcccccC-----CCCCCCCCcceeeeecCCCCCCceEEeecC--CCceeE
Q 006940 30 ISCGARQNI--H-SPPTNTLWFKDFAYTG-GIPANAT-----RPSFITPPLKTLRYFPLSEGPENCYIINRV--PKGHYN 98 (624)
Q Consensus 30 I~CG~~~~~--~-~~~~~~~w~~D~~~~~-g~~~~~~-----~~~~~~~~y~t~R~F~~~~~~~~~Y~~~~~--~~g~y~ 98 (624)
||||++.+. + ++.+||+|++|..|+. |.+..+. ......++|+|||+||+ |.|+||+||+. ++++||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~~--g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFPE--GSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcCC--CCccEEEeeccCCCCceEE
Confidence 799999763 2 3468999999998874 5544441 12345688999999994 77899999987 456999
Q ss_pred EEEEEecccCCCCC-----CCCcEEEEEcCeEEEEeecCCCCcccceeEEEEEEee-CCeEEEEEeeCCCCC-CcEeeEE
Q 006940 99 VRIFFGLVTLTSFD-----HEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLR-DGTVSICFHSTGHGD-PAILSLE 171 (624)
Q Consensus 99 vRl~F~~~~y~~~~-----~~~~Fdv~~~~~~~~~v~~~~~~~~~~~~~E~~~~~~-~~~l~i~f~~~~~~~-pfIsaIE 171 (624)
|||||+|||||+++ +++.|||++|++.|.+|.... ....+++||+++++. ++.|+|||+|++.|. |||||||
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~-~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsaiE 157 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN-SPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISAIE 157 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCceeEEEEecC-CCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeEEE
Confidence 99999999999874 256799999999999998533 334679999888887 799999999999887 9999999
Q ss_pred EEEcCCcccccCCCCccceeEEEEEeecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcccccccccee-ccCCCCC
Q 006940 172 ILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIK-QASKAPN 250 (624)
Q Consensus 172 l~~l~~~~y~~~~~~~~~~~l~~~~Rin~Gg~~~~~~~~~~~D~~~~dR~W~~~~~~~~~~~~~~~t~~~i~-~~~~~~~ 250 (624)
|||||+.+|+... ...+.+|++++|+|+||... .+||++|++ ||+|.++. ....|..+++...|. ...+.++
T Consensus 158 l~~lp~~ly~~~~-~~~s~~L~~~~R~n~G~~~~--~iryp~D~~--dR~W~~~~--~~~~~~~ist~~~i~~~~~~~~~ 230 (347)
T PF12819_consen 158 LRPLPDSLYPDTD-ANSSQALETVYRLNVGGSSS--FIRYPDDTY--DRIWQPYS--SSPGWSNISTTSNININSSNNPY 230 (347)
T ss_pred EEECCccceeccc-cCCCceeEEEEeecCCCccc--ccCCCCCcc--eeeccccc--cCccccccccceeeecccCCccC
Confidence 9999999995321 14577899999999998742 289999998 99999763 135566777766665 3445677
Q ss_pred CChHHHHHHhhhcCCCC--CccEEEeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEECCeecccCCceeeecCCceee
Q 006940 251 FYPEALYQTALVSTDSQ--PDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTA 328 (624)
Q Consensus 251 ~~P~~Vy~Tar~~~~~~--~~lt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~ 328 (624)
.+|.+|||||+++.+.+ .+++|.| ++++..|+||||||||+......++|+|+|||||+.+.+++++.. .+....+
T Consensus 231 ~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~-~~~~~~~ 308 (347)
T PF12819_consen 231 DAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPY-LGADTVP 308 (347)
T ss_pred cChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCccc-ccCcceE
Confidence 89999999999987664 6899999 999999999999999987556667999999999999887554422 2222344
Q ss_pred EEEEEEEeeeC-eeEEEEeCCCCCc--hHHHHHHhhhhh
Q 006940 329 LVLNTTVAVNG-RTLTVTLHPKGGS--HAIINAIEVFEI 364 (624)
Q Consensus 329 ~~~~~~~~~~~-~~l~i~~~~~~~~--~p~lnaiEi~~~ 364 (624)
++..+.+.+.+ +.++|++.|+.++ +|+|||+|||++
T Consensus 309 ~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 309 YYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred eecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 55666665543 4789999988765 899999999975
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.85 E-value=2.7e-20 Score=210.68 Aligned_cols=89 Identities=31% Similarity=0.575 Sum_probs=82.9
Q ss_pred ccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEec
Q 006940 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNF 524 (624)
Q Consensus 445 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l 524 (624)
.++.|+|++|.++|.+|..++.|++|+.|+|++|.|.|.+|..++.+++|+.|+|++|+++|.+|+.+.. +.+|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc-CCCCCEEEC
Confidence 3778999999999999999999999999999999999999999999999999999999999999999886 789999999
Q ss_pred cCCCCCCCCC
Q 006940 525 TDNAGLCGIP 534 (624)
Q Consensus 525 ~~N~~lc~~~ 534 (624)
++|...+..|
T Consensus 498 s~N~l~g~iP 507 (623)
T PLN03150 498 NGNSLSGRVP 507 (623)
T ss_pred cCCcccccCC
Confidence 9998765543
No 4
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.81 E-value=8.3e-21 Score=180.03 Aligned_cols=142 Identities=26% Similarity=0.401 Sum_probs=86.7
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCccccccc--c--ceeccCCCCCCChHHHHHHhhhcCCCCCc
Q 006940 194 TATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTE--S--SIKQASKAPNFYPEALYQTALVSTDSQPD 269 (624)
Q Consensus 194 ~~~Rin~Gg~~~~~~~~~~~D~~~~dR~W~~~~~~~~~~~~~~~t~--~--~i~~~~~~~~~~P~~Vy~Tar~~~~~~~~ 269 (624)
.++||||||+.. .|.- +..|.+|..+....+...... . ............+..+|||+|+... +
T Consensus 1 ~~~~IN~Gg~~~-------~~~~--g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~---~ 68 (174)
T PF11721_consen 1 VVLRINAGGPAY-------TDSS--GIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS---S 68 (174)
T ss_dssp EEEEEEETSSSE-------EETT--TEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS---S
T ss_pred CEEEEECCCCcc-------cCCC--CCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC---c
Confidence 378999999752 2222 788888875433333111000 0 0001111223346789999999754 3
Q ss_pred cEEEeecCCCCcEEEEEEEEeecCCC----CCCceEEEEEEECCeecccCCceeeecCCceeeEEEEE-EEeeeCeeEEE
Q 006940 270 LQYTMDVDPNRNYSIWLHFAEIDNTI----TGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNT-TVAVNGRTLTV 344 (624)
Q Consensus 270 lt~~~~v~~~~~y~vrLhFaEi~~~~----~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~-~~~~~~~~l~i 344 (624)
|+|.+|+.++|.|.|+|||||++... ...++|+|||+|||++++++|||++.+|+..++.++.+ .+.++++.|+|
T Consensus 69 f~Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i 148 (174)
T PF11721_consen 69 FSYDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNI 148 (174)
T ss_dssp EEEEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEET
T ss_pred eEEEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEE
Confidence 99999977999999999999998743 34899999999999999999999999998655666665 78888899999
Q ss_pred EeC
Q 006940 345 TLH 347 (624)
Q Consensus 345 ~~~ 347 (624)
.|.
T Consensus 149 ~f~ 151 (174)
T PF11721_consen 149 QFV 151 (174)
T ss_dssp TEE
T ss_pred EEE
Confidence 998
No 5
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.50 E-value=4.6e-14 Score=133.93 Aligned_cols=134 Identities=28% Similarity=0.421 Sum_probs=83.8
Q ss_pred EEEccCCCCCCCCCCCCceeeccCCccCCcccc----------cCC-C----CCCCCCcceeeeecCCCCCCceEEeecC
Q 006940 28 MRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN----------ATR-P----SFITPPLKTLRYFPLSEGPENCYIINRV 92 (624)
Q Consensus 28 ~~I~CG~~~~~~~~~~~~~w~~D~~~~~g~~~~----------~~~-~----~~~~~~y~t~R~F~~~~~~~~~Y~~~~~ 92 (624)
++||||++.- ++..|..|.+|..+.+|...- ... . ...+++|+|.|+-+. .+.|.||+.
T Consensus 3 ~~IN~Gg~~~--~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~~ 76 (174)
T PF11721_consen 3 LRINAGGPAY--TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPVV 76 (174)
T ss_dssp EEEEETSSSE--EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE--
T ss_pred EEEECCCCcc--cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEecC
Confidence 6899998764 567899999999876554300 000 0 012258999999753 489999978
Q ss_pred CCceeEEEEEEecccCCC----C-CCCCcEEEEEcCeEEEEeecCCCC---cc---cceeEEE-EEEeeCCeEEEEEee-
Q 006940 93 PKGHYNVRIFFGLVTLTS----F-DHEPLFDISVEGTQIYSLKSGWSD---HD---DRAFAEA-LVFLRDGTVSICFHS- 159 (624)
Q Consensus 93 ~~g~y~vRl~F~~~~y~~----~-~~~~~Fdv~~~~~~~~~v~~~~~~---~~---~~~~~E~-~~~~~~~~l~i~f~~- 159 (624)
++|.|.|||||.+..+.. . ...+.|||.++| .+|+.+|+. .+ .++++++ -+.++++.|.|+|..
T Consensus 77 ~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g---~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~ 153 (174)
T PF11721_consen 77 PNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNG---ETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWA 153 (174)
T ss_dssp S-EEEEEEEEEE-SSS--------SSSS-EEEEETT---EEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE
T ss_pred CCcEEEEEEEeccccccccccccCCCceEEEEEecc---eEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEec
Confidence 889999999999875543 1 346789999999 556666653 21 2577777 455799999999985
Q ss_pred ----------CCCCCCcEeeE
Q 006940 160 ----------TGHGDPAILSL 170 (624)
Q Consensus 160 ----------~~~~~pfIsaI 170 (624)
...+.|.||||
T Consensus 154 ~~~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 154 GKGTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp --SEEEEEEESSSSSSSEEEE
T ss_pred CCCcEEeeccccCCCcEEeeC
Confidence 44677999987
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.48 E-value=1.2e-13 Score=166.06 Aligned_cols=110 Identities=32% Similarity=0.529 Sum_probs=87.8
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+++.+|..+.+|++|+.|+|++|++.|.+|..+.+|++|+.|+|++|.++|.+|..+.++++|+.|+|+
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 46778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC 531 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc 531 (624)
+|+++|.+|..+.. +..|+.+++++|+..+
T Consensus 556 ~N~l~~~~p~~l~~-l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 556 QNQLSGEIPKNLGN-VESLVQVNISHNHLHG 585 (968)
T ss_pred CCcccccCChhHhc-CcccCEEeccCCccee
Confidence 88888888877765 5667777777766544
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.46 E-value=2.6e-13 Score=163.15 Aligned_cols=149 Identities=32% Similarity=0.544 Sum_probs=100.5
Q ss_pred CChHHHHHHHHhhhccCCCC--CCCCCC-CCCCCCCCCCCCcccccCCCCceeEEEEEEcCCCCCccCCCcccccccccc
Q 006940 371 TLPEEVRALQVLKNSLDLPH--RFGWNG-DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQ 447 (624)
Q Consensus 371 ~~~~~~~aL~~~k~~~~~~~--~~~W~~-~~c~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~ 447 (624)
..++|..+|++||.++.++. ..+|+. +.|+ .|.|++|+.. .+++.|+|++|+++|.+|..+..|++|+
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c----~w~gv~c~~~-----~~v~~L~L~~~~i~~~~~~~~~~l~~L~ 96 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNSSADVC----LWQGITCNNS-----SRVVSIDLSGKNISGKISSAIFRLPYIQ 96 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCC----cCcceecCCC-----CcEEEEEecCCCccccCChHHhCCCCCC
Confidence 36689999999999987653 247953 3332 6999999732 2477888888888888887888888888
Q ss_pred cccCcCccccccCCCCcC-CCccCCeEeccCCCCCC----------------------CCccccCCCCCCCEEeccCCcC
Q 006940 448 SINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNG----------------------SIPESLGQLTALRRLNLNGNTL 504 (624)
Q Consensus 448 ~L~Ls~N~l~g~ip~~l~-~l~~L~~LdLs~N~l~g----------------------~iP~~l~~l~~L~~L~Ls~N~l 504 (624)
.|+|++|+++|.+|..+. .+.+|++|+|++|+++| .+|..++++++|++|+|++|.+
T Consensus 97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 888888888777776544 55666666666655554 4444555555566666666666
Q ss_pred cccCCchhhhccCCCCEEeccCCCC
Q 006940 505 SGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 505 ~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
.+.+|..+.. +.+|+.|++++|..
T Consensus 177 ~~~~p~~~~~-l~~L~~L~L~~n~l 200 (968)
T PLN00113 177 VGKIPNSLTN-LTSLEFLTLASNQL 200 (968)
T ss_pred cccCChhhhh-CcCCCeeeccCCCC
Confidence 5555555544 45566666666553
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.91 E-value=3.2e-10 Score=103.29 Aligned_cols=81 Identities=33% Similarity=0.616 Sum_probs=52.3
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|-|++|.|+ .+|+.+..|.+|+.|++++|++. .+|.++++|+.|+.|+++-|++. .+|..++.++.|++|||.+
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence 455666666665 45556666666666666666666 56666666666666666666666 6666666666666666666
Q ss_pred CcCc
Q 006940 502 NTLS 505 (624)
Q Consensus 502 N~l~ 505 (624)
|+++
T Consensus 112 nnl~ 115 (264)
T KOG0617|consen 112 NNLN 115 (264)
T ss_pred cccc
Confidence 6654
No 9
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.85 E-value=7.4e-09 Score=109.34 Aligned_cols=158 Identities=23% Similarity=0.297 Sum_probs=102.2
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCccccccccceeccCCCCCCChHHHHHHhhhcCCCCCccEEEeecC
Q 006940 198 LSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVD 277 (624)
Q Consensus 198 in~Gg~~~~~~~~~~~D~~~~dR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~Tar~~~~~~~~lt~~~~v~ 277 (624)
||||+..... .|.|+.- +|.|.+|..+...+ ....|....+.....+...|+|||...+.. .-.|+|++.
T Consensus 1 IdCG~~~~~s--~y~D~~t--g~~~~~D~~~~~~g-----~~~~i~~~~~~~~~~~~~~y~taR~F~~g~-r~cY~l~~~ 70 (347)
T PF12819_consen 1 IDCGSSSNSS--SYVDDST--GRTWVSDDDFIDTG-----KSGNISSQPDSSSSDSSPPYQTARIFPEGS-RNCYTLPVT 70 (347)
T ss_pred CcCCCCCCCc--ccccCCC--CcEEeCCCCcccCC-----CccccccccCCcCCccccccceEEEcCCCC-ccEEEeecc
Confidence 6999874321 3666555 99999997543211 122221111111123556899999987432 379999987
Q ss_pred --CCCcEEEEEEEEeecCCCCC----CceEEEEEEECCeecccCCceeeecCCceeeEEEEEEEeee-CeeEEEEeCCCC
Q 006940 278 --PNRNYSIWLHFAEIDNTITG----VGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVN-GRTLTVTLHPKG 350 (624)
Q Consensus 278 --~~~~y~vrLhFaEi~~~~~~----~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~ 350 (624)
.+++|+|||||.-..+.... ...-.|+++++...+. .+++.. .....+++++.+.+. ++.|.|.|.|..
T Consensus 71 ~~~~~~yliRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~-tV~~~~---~~~~~~~~E~ii~v~~~~~l~vclv~~~ 146 (347)
T PF12819_consen 71 PPGGGKYLIRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWS-TVNLSN---SPSSPVVKEFIINVTWSDTLSVCLVPTG 146 (347)
T ss_pred CCCCceEEEEEEeccccccccccccccCCcceEEEECCceeE-EEEecC---CCcceEEEEEEEEEcCCCcEEEEEEeCC
Confidence 45699999999976432111 1235699999987652 122211 111357888888887 688999999998
Q ss_pred Cc-hHHHHHHhhhhhhhhcc
Q 006940 351 GS-HAIINAIEVFEIIAVES 369 (624)
Q Consensus 351 ~~-~p~lnaiEi~~~~~~~~ 369 (624)
.. .|+|||||+..+.+..-
T Consensus 147 ~g~~pFIsaiEl~~lp~~ly 166 (347)
T PF12819_consen 147 SGTFPFISAIELRPLPDSLY 166 (347)
T ss_pred CCCCCceeEEEEEECCccce
Confidence 54 49999999999977533
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.74 E-value=1.3e-09 Score=99.35 Aligned_cols=103 Identities=34% Similarity=0.591 Sum_probs=55.3
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCC-------------------
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG------------------- 482 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g------------------- 482 (624)
++.|++.+|+|. .+|..++.|++|+.|+++-|++. .+|..|+.++.|+.|||.+|++..
T Consensus 58 levln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~ 135 (264)
T KOG0617|consen 58 LEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLG 135 (264)
T ss_pred hhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhc
Confidence 444555555544 34445555555555555555554 445555555555555555544432
Q ss_pred -----CCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 483 -----SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 483 -----~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
.+|..++++++|+.|.+..|.+- ++|.+++. +..|+.|.+.+|.
T Consensus 136 dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~-lt~lrelhiqgnr 184 (264)
T KOG0617|consen 136 DNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD-LTRLRELHIQGNR 184 (264)
T ss_pred CCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHH-HHHHHHHhcccce
Confidence 45555566666666666666655 55666654 4555566666665
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.67 E-value=3.4e-09 Score=112.81 Aligned_cols=106 Identities=28% Similarity=0.383 Sum_probs=70.0
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCcc---ccCCCCCCCEEe
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE---SLGQLTALRRLN 498 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~---~l~~l~~L~~L~ 498 (624)
++.|+|++|+|+..-+..|..|.+|+.|+|++|+++..-...|..|.+|+.|||++|.+++.|-+ .+..|++|+.|.
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 66677777777766666677777777777777777655555666677777777777777666654 244566677777
Q ss_pred ccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 499 LNGNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 499 Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|.+|++. .||...+..+..|++|+|.+|+
T Consensus 399 l~gNqlk-~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 399 LTGNQLK-SIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ecCceee-ecchhhhccCcccceecCCCCc
Confidence 7777776 5565544446666666666664
No 12
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=4.2e-08 Score=76.04 Aligned_cols=60 Identities=37% Similarity=0.587 Sum_probs=42.7
Q ss_pred ccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcC
Q 006940 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTL 504 (624)
Q Consensus 445 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 504 (624)
+|+.|+|++|+++...+..|..+++|+.|+|++|.++...|..+.++++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 567777777777755556677777777777777777755556777777777777777764
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.54 E-value=1.1e-08 Score=109.61 Aligned_cols=103 Identities=28% Similarity=0.464 Sum_probs=63.8
Q ss_pred EEEEEcCCCCCcc-CCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCcc-ccCCCCCCCEEec
Q 006940 422 IDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNL 499 (624)
Q Consensus 422 l~~L~L~~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~-~l~~l~~L~~L~L 499 (624)
++++.+..|+|.. -+|+.+..|..|+.||||+|+|. ..|..+..-.++-.|+||+|++. .||. -+-+|+.|-.|||
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcc
Confidence 4445566666642 35666666666666666666666 56666666666666666666666 5553 3446666666666
Q ss_pred cCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 500 NGNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|+|++. .+|+.+.. +..|+.|+|++||
T Consensus 158 S~NrLe-~LPPQ~RR-L~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 158 SNNRLE-MLPPQIRR-LSMLQTLKLSNNP 184 (1255)
T ss_pred ccchhh-hcCHHHHH-HhhhhhhhcCCCh
Confidence 666666 55665544 4556666666665
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.54 E-value=1.7e-08 Score=103.30 Aligned_cols=105 Identities=30% Similarity=0.411 Sum_probs=89.3
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|-|. .+|.+++.+..|+.|||+.|+|. .+|..+..+..|+.+-.++|++...-|+.+.+|.+|..|||.+
T Consensus 437 Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 437 LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred ceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 666888877765 68888888888999999999887 7888887788888887888888755555699999999999999
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
|.+. .||+.+++ +.++++|.+.||++.
T Consensus 515 Ndlq-~IPp~Lgn-mtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 515 NDLQ-QIPPILGN-MTNLRHLELDGNPFR 541 (565)
T ss_pred Cchh-hCChhhcc-ccceeEEEecCCccC
Confidence 9999 89999987 889999999999975
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.50 E-value=8.4e-08 Score=90.62 Aligned_cols=102 Identities=27% Similarity=0.391 Sum_probs=38.4
Q ss_pred EEEEEEcCCCCCccCCCcccc-cccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCcccc-CCCCCCCEEe
Q 006940 421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRLN 498 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l-~~l~~L~~L~ 498 (624)
.++.|+|.+|.|+-. ..++ .|.+|+.|+|++|.++ .++ .+..|+.|+.|+|++|+++ .+.+.+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 467899999999853 3455 5789999999999999 454 5788999999999999999 565544 4689999999
Q ss_pred ccCCcCcccCC-chhhhccCCCCEEeccCCC
Q 006940 499 LNGNTLSGRVP-AALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 499 Ls~N~l~g~iP-~~~~~~l~~l~~l~l~~N~ 528 (624)
|++|++..--- ..+. .+++|+.|++.+||
T Consensus 95 L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 95 LSNNKISDLNELEPLS-SLPKLRVLSLEGNP 124 (175)
T ss_dssp -TTS---SCCCCGGGG-G-TT--EEE-TT-G
T ss_pred CcCCcCCChHHhHHHH-cCCCcceeeccCCc
Confidence 99999973211 1233 36789999999998
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.48 E-value=6e-08 Score=108.65 Aligned_cols=104 Identities=30% Similarity=0.449 Sum_probs=90.5
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
+|+.|+|+.|.|...-...+.+|..|+.|+||+|+|+ .+|..+.++..|++|...+|++. ..| ++..++.|+.+||+
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecc
Confidence 4888999999998655557899999999999999999 89999999999999999999998 888 88999999999999
Q ss_pred CCcCc-ccCCchhhhccCCCCEEeccCCCC
Q 006940 501 GNTLS-GRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 501 ~N~l~-g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
.|+|+ +.+|.... .++|+.||++||.+
T Consensus 461 ~N~L~~~~l~~~~p--~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 461 CNNLSEVTLPEALP--SPNLKYLDLSGNTR 488 (1081)
T ss_pred cchhhhhhhhhhCC--CcccceeeccCCcc
Confidence 99997 34454332 26899999999985
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.43 E-value=3.4e-08 Score=105.91 Aligned_cols=110 Identities=28% Similarity=0.469 Sum_probs=98.8
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccc-cCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 499 (624)
++++|+|+.|+|+ .+|..+++|++|+.|.+.+|+|+- -||..|+.|.+|+.+..++|.|. .+|+.+..+..|+.|.|
T Consensus 269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence 4677888888887 689999999999999999999852 47999999999999999999998 99999999999999999
Q ss_pred cCCcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940 500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~ 534 (624)
+.|++- ++|+.+- .+..|..|++..|+.+--+|
T Consensus 347 ~~NrLi-TLPeaIH-lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 347 DHNRLI-TLPEAIH-LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccccee-echhhhh-hcCCcceeeccCCcCccCCC
Confidence 999998 8899875 48899999999999887665
No 18
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=98.40 E-value=2.4e-07 Score=90.49 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=83.3
Q ss_pred hHHHHHHhhhcCCCCCccEEEeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEEC-CeecccCCceeeecCCceee--E
Q 006940 253 PEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILIN-GDIAFQGVDVVKMSGDRYTA--L 329 (624)
Q Consensus 253 P~~Vy~Tar~~~~~~~~lt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~in-g~~~~~~~di~~~~~~~~~~--~ 329 (624)
-..+|||+|+.... |.|..|.+..|+|-+.|.|||.++ +..+..+|||-+| +..+.+++|++...|+..++ .
T Consensus 107 d~ily~ter~neet---Fgyd~pik~dgdyalvlkfaevyF--~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe 181 (355)
T KOG3593|consen 107 DIILYQTERYNEET---FGYDVPIKEDGDYALVLKFAEVYF--KTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDE 181 (355)
T ss_pred hhhhhhhcccchhh---hcccccccCCCceehhhhHHHHHH--HhhhhhheeeeeccceeEEeccchhhhcCCCcccccc
Confidence 45689999997544 788888889999999999999986 5678999999999 99999999999888753222 2
Q ss_pred EEEEE-----------Ee-eeCeeEEEEeCCCCCchHHHHHHhhhhh
Q 006940 330 VLNTT-----------VA-VNGRTLTVTLHPKGGSHAIINAIEVFEI 364 (624)
Q Consensus 330 ~~~~~-----------~~-~~~~~l~i~~~~~~~~~p~lnaiEi~~~ 364 (624)
++.+. +. ...|+++|+|.+..-.+|++||..|+.-
T Consensus 182 ~i~~~i~~gkls~~gess~~t~gkl~le~~kg~ldnpk~~a~aIl~g 228 (355)
T KOG3593|consen 182 IIPCLIGQGKLSVCGESSISTLGKLNLEFLKGVLDNPKDCARAILVG 228 (355)
T ss_pred eEEEEEcCceEEEEeeeEEeecceEEEEeecccCCChhhhhHHHhhc
Confidence 22111 11 1237899999988777899999988775
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.35 E-value=3e-07 Score=98.38 Aligned_cols=107 Identities=22% Similarity=0.275 Sum_probs=90.9
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
+++.|+|.+|-|+..-..++..++.|+.||||.|.++-.--..|..-.++++|+|++|+++..--..|..+.+|..|.|+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 58889999999998888889999999999999999994444567777889999999999986666788889999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
.|+++ .+|...+..++.|+.|+|..|.
T Consensus 206 rNrit-tLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 206 RNRIT-TLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred cCccc-ccCHHHhhhcchhhhhhccccc
Confidence 99999 7888777778888888887775
No 20
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=3.3e-07 Score=70.97 Aligned_cols=59 Identities=31% Similarity=0.548 Sum_probs=55.1
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l 480 (624)
|+.|+|++|+|+..-+..|.++++|+.|+|++|+++...|..|..|++|+.|+|++|+|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 78899999999987778999999999999999999988788999999999999999985
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.26 E-value=8e-08 Score=98.52 Aligned_cols=97 Identities=32% Similarity=0.518 Sum_probs=61.6
Q ss_pred EEcCCCCCccCCCcccccccccccccCcCccccccCCCCcC-CCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCc
Q 006940 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT 503 (624)
Q Consensus 425 L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 503 (624)
|+|..|.|. .+| +|.++..|..|.++.|++. .+|.+.. .|.+|..|||..|++. +.|+++.-+.+|+.||||+|.
T Consensus 211 LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 211 LYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred HHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCc
Confidence 444444443 223 4444444444444444444 3444333 6777777888888877 778887777888888888888
Q ss_pred CcccCCchhhhccCCCCEEeccCCC
Q 006940 504 LSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 504 l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
++ .+|.++++ + +|+.|.+.|||
T Consensus 287 is-~Lp~sLgn-l-hL~~L~leGNP 308 (565)
T KOG0472|consen 287 IS-SLPYSLGN-L-HLKFLALEGNP 308 (565)
T ss_pred cc-cCCccccc-c-eeeehhhcCCc
Confidence 87 56777776 3 67777777876
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.19 E-value=3.9e-07 Score=93.43 Aligned_cols=94 Identities=26% Similarity=0.317 Sum_probs=72.7
Q ss_pred ccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCC
Q 006940 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518 (624)
Q Consensus 439 ~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~ 518 (624)
.|.+|++|+.|+|++|++++.-+.+|..+..|+.|.|..|+|...--..|.+++.|+.|+|.+|+++-.-|..+.. +..
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~-~~~ 347 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT-LFS 347 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc-cce
Confidence 4778888888888888888777888888888888888888887444455677888888888888888555555443 667
Q ss_pred CCEEeccCCCCCCCC
Q 006940 519 RASFNFTDNAGLCGI 533 (624)
Q Consensus 519 l~~l~l~~N~~lc~~ 533 (624)
|..|++-.|++.|.|
T Consensus 348 l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNC 362 (498)
T ss_pred eeeeehccCcccCcc
Confidence 788888888888865
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.15 E-value=4.7e-07 Score=96.76 Aligned_cols=114 Identities=28% Similarity=0.434 Sum_probs=97.5
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
|+.|.+++|+++ .+|.+++.+..|..||.+.|.+. .+|..++.|.+|+.|.+..|++. .+|+++..|+ |..||+++
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSC 220 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeeccc
Confidence 677889999987 78999999999999999999998 88999999999999999999999 8888888655 88999999
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCCCCCCCCCCCCCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHL 543 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~~~~~c~~~~ 543 (624)
|+++ .||..+.. |..|+.|-|.+||.... ....|.+.+
T Consensus 221 Nkis-~iPv~fr~-m~~Lq~l~LenNPLqSP--PAqIC~kGk 258 (722)
T KOG0532|consen 221 NKIS-YLPVDFRK-MRHLQVLQLENNPLQSP--PAQICEKGK 258 (722)
T ss_pred Ccee-ecchhhhh-hhhheeeeeccCCCCCC--hHHHHhccc
Confidence 9999 89998876 88999999999995432 233565443
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.02 E-value=7.4e-06 Score=94.12 Aligned_cols=77 Identities=27% Similarity=0.332 Sum_probs=52.6
Q ss_pred ccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEec
Q 006940 445 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNF 524 (624)
Q Consensus 445 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l 524 (624)
+|+.|+|++|+|++ +|.. ..+|+.|+|++|+|+ .+|.. ..+|+.|+|++|+++ .+|..+.. +..|..|++
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~-L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIH-LSSETTVNL 452 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhh-ccCCCeEEC
Confidence 45666666666663 4432 245777777777776 46643 245677888888887 78887765 678889999
Q ss_pred cCCCCCC
Q 006940 525 TDNAGLC 531 (624)
Q Consensus 525 ~~N~~lc 531 (624)
++|++.+
T Consensus 453 s~N~Ls~ 459 (788)
T PRK15387 453 EGNPLSE 459 (788)
T ss_pred CCCCCCc
Confidence 9998554
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.98 E-value=6.4e-06 Score=77.89 Aligned_cols=85 Identities=33% Similarity=0.497 Sum_probs=29.6
Q ss_pred ccccccccccccCcCccccccCCCCcC-CCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccC
Q 006940 439 GISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLL 517 (624)
Q Consensus 439 ~~~~L~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~ 517 (624)
.+.+..+++.|+|++|.++ .|. .++ .|.+|+.|||++|.++ .++ .+..++.|+.|+|++|+++ .+++.+...++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred ccccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence 3455668999999999998 454 566 5889999999999999 554 5778999999999999999 56655544478
Q ss_pred CCCEEeccCCC
Q 006940 518 HRASFNFTDNA 528 (624)
Q Consensus 518 ~l~~l~l~~N~ 528 (624)
+|+.|++++|.
T Consensus 89 ~L~~L~L~~N~ 99 (175)
T PF14580_consen 89 NLQELYLSNNK 99 (175)
T ss_dssp T--EEE-TTS-
T ss_pred cCCEEECcCCc
Confidence 89999999997
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.94 E-value=2e-06 Score=96.79 Aligned_cols=90 Identities=33% Similarity=0.529 Sum_probs=82.4
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+. .+|..+..+.+|+.|+++.|.+. ..|.+..++.+|++|+|.+|.+. .+|..+..+.+|+.|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 4889999998875 78999999999999999999998 78899999999999999999999 999999999999999999
Q ss_pred CCcCcccCCchhhh
Q 006940 501 GNTLSGRVPAALGG 514 (624)
Q Consensus 501 ~N~l~g~iP~~~~~ 514 (624)
.|+|. .+|.-+..
T Consensus 123 ~N~f~-~~Pl~i~~ 135 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEV 135 (1081)
T ss_pred hhccC-CCchhHHh
Confidence 99998 88876543
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.91 E-value=1.5e-06 Score=89.31 Aligned_cols=118 Identities=27% Similarity=0.330 Sum_probs=84.7
Q ss_pred CcccccCCC-----CceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccC-CCCC
Q 006940 408 GADCQFDRT-----SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY-NFFN 481 (624)
Q Consensus 408 gv~C~~~~~-----~~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~-N~l~ 481 (624)
-|.|+..+- .-+...+.|.|..|+|+..-|..|+.|++|+.||||+|+|+-.-|..|..|.+|..|-+-+ |+++
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 367764321 1223467899999999988888999999999999999999988899999998887766554 8888
Q ss_pred CCCc-cccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCC
Q 006940 482 GSIP-ESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 527 (624)
Q Consensus 482 g~iP-~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N 527 (624)
.+| ..|++|.+|+.|.+.-|++.-..+..+.. +..+..|.+.+|
T Consensus 130 -~l~k~~F~gL~slqrLllNan~i~Cir~~al~d-L~~l~lLslyDn 174 (498)
T KOG4237|consen 130 -DLPKGAFGGLSSLQRLLLNANHINCIRQDALRD-LPSLSLLSLYDN 174 (498)
T ss_pred -hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH-hhhcchhcccch
Confidence 555 57778888888877777777333333332 444444444444
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.91 E-value=2.5e-05 Score=95.60 Aligned_cols=106 Identities=22% Similarity=0.252 Sum_probs=81.8
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.|+.|+|++|...+.+|..+++|++|+.|+|++|..-+.+|..+ ++++|+.|+|++|.....+|.. ..+|+.|+|+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 47789999998888899999999999999999886656788766 6888888888887655566653 3567788888
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCG 532 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~ 532 (624)
+|.++ .+|..+.. +.+|+.|++.+++.+..
T Consensus 855 ~n~i~-~iP~si~~-l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 855 RTGIE-EVPWWIEK-FSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred CCCCc-cChHHHhc-CCCCCEEECCCCCCcCc
Confidence 88887 67777654 67788888877554443
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.88 E-value=1.9e-05 Score=91.12 Aligned_cols=94 Identities=30% Similarity=0.434 Sum_probs=45.8
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
|+.|+|++|+|+ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.|+|++|+|+ .+|+.+. ++|+.|+|++
T Consensus 222 L~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 222 IKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCC
Confidence 344444444444 2333221 24455555555554 4444332 35666666666665 4555442 3566666666
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|+|+ .+|..+. .+|+.|++++|.
T Consensus 293 N~Lt-~LP~~lp---~sL~~L~Ls~N~ 315 (754)
T PRK15370 293 NSIR-TLPAHLP---SGITHLNVQSNS 315 (754)
T ss_pred Cccc-cCcccch---hhHHHHHhcCCc
Confidence 6666 3444322 234555555554
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.82 E-value=3.9e-05 Score=93.90 Aligned_cols=106 Identities=25% Similarity=0.303 Sum_probs=70.9
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.|+.|+|.+|.|. .++..+..|++|+.|+|+++..-+.+| .+..+++|+.|+|++|.....+|..+.++++|+.|+|+
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 3666777777765 456666777777777777765545666 36677777777777776556777777777777777777
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
+|..-+.+|..+ .+.+|+.|++++|..+
T Consensus 690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L 717 (1153)
T PLN03210 690 RCENLEILPTGI--NLKSLYRLNLSGCSRL 717 (1153)
T ss_pred CCCCcCccCCcC--CCCCCCEEeCCCCCCc
Confidence 765445666654 2556666666665433
No 31
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.82 E-value=2.2e-06 Score=75.95 Aligned_cols=105 Identities=21% Similarity=0.344 Sum_probs=82.4
Q ss_pred EEEEEEcCCCCCccCCCcccc-cccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 499 (624)
.++.++|++|.++. +|..|. +.+.++.|+|++|.++ .+|.++..++.|+.|+++.|.|. ..|.-+..|.+|-.|+.
T Consensus 54 el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 47889999999984 566554 4568999999999999 88999999999999999999999 78888888999999999
Q ss_pred cCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
.+|... +||-.+.- .......++.++++-
T Consensus 131 ~~na~~-eid~dl~~-s~~~al~~lgnepl~ 159 (177)
T KOG4579|consen 131 PENARA-EIDVDLFY-SSLPALIKLGNEPLG 159 (177)
T ss_pred CCCccc-cCcHHHhc-cccHHHHHhcCCccc
Confidence 999887 77766432 122223345555543
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.82 E-value=3.4e-06 Score=83.68 Aligned_cols=100 Identities=23% Similarity=0.367 Sum_probs=46.6
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+++.|+|... ..+..|.+|+.||||+|.++ .+...--.|.+.+.|.|+.|.+. .+ ..+..+-+|..||+++
T Consensus 309 ir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 309 LRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSS 383 (490)
T ss_pred eeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccccc
Confidence 44444444444321 11344444444444444444 22222233444444444444433 11 2344455667777777
Q ss_pred CcCcccCC--chhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVP--AALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP--~~~~~~l~~l~~l~l~~N~ 528 (624)
|++. .+- ..+++ ++.|+++.+.+||
T Consensus 384 N~Ie-~ldeV~~IG~-LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 384 NQIE-ELDEVNHIGN-LPCLETLRLTGNP 410 (490)
T ss_pred cchh-hHHHhccccc-ccHHHHHhhcCCC
Confidence 7764 211 12332 5667777777777
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.77 E-value=6.4e-06 Score=85.87 Aligned_cols=107 Identities=31% Similarity=0.432 Sum_probs=58.0
Q ss_pred EEEEEcCCCCCccC----CCcccccccccccccCcCcccccc----CCCCcCCCccCCeEeccCCCCCCC----CccccC
Q 006940 422 IDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESLG 489 (624)
Q Consensus 422 l~~L~L~~n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~----iP~~l~ 489 (624)
++.|+|++|.+++. ++..+..+++|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++. ++..+.
T Consensus 139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~ 218 (319)
T cd00116 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA 218 (319)
T ss_pred ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence 56666666666632 223444556666666666666632 223344445666677766666532 223445
Q ss_pred CCCCCCEEeccCCcCcccCCchhhhc----cCCCCEEeccCCC
Q 006940 490 QLTALRRLNLNGNTLSGRVPAALGGR----LLHRASFNFTDNA 528 (624)
Q Consensus 490 ~l~~L~~L~Ls~N~l~g~iP~~~~~~----l~~l~~l~l~~N~ 528 (624)
.+++|++|++++|.+++.....+... ...|+.|++++|.
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 55666677776666664222222221 1456666666554
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.77 E-value=3.4e-05 Score=89.03 Aligned_cols=76 Identities=26% Similarity=0.436 Sum_probs=45.2
Q ss_pred cccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEe
Q 006940 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFN 523 (624)
Q Consensus 444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~ 523 (624)
++|+.|++++|.+++ +|..+. ++|+.|+|++|+|+ .+|..+. ++|+.|+|++|+|+ .+|..+.. .|+.|+
T Consensus 325 ~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~---sL~~Ld 394 (754)
T PRK15370 325 PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPA---ALQIMQ 394 (754)
T ss_pred ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHH---HHHHHh
Confidence 355556666666553 454442 46777777777766 4565442 46777777777776 56665432 355666
Q ss_pred ccCCCC
Q 006940 524 FTDNAG 529 (624)
Q Consensus 524 l~~N~~ 529 (624)
+++|..
T Consensus 395 Ls~N~L 400 (754)
T PRK15370 395 ASRNNL 400 (754)
T ss_pred hccCCc
Confidence 776663
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.77 E-value=5.7e-06 Score=86.27 Aligned_cols=84 Identities=31% Similarity=0.483 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCcc----CCCcccccc-cccccccCcCcccccc----CCCCcCCCccCCeEeccCCCCCCC----Ccccc
Q 006940 422 IDGLGLDNQGLRG----FLPNGISKL-RHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESL 488 (624)
Q Consensus 422 l~~L~L~~n~l~g----~~p~~~~~L-~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~----iP~~l 488 (624)
++.|++++|.+.+ .+...+..+ ++|+.|+|++|.+++. ++..+..+..|+.|+|++|.+++. ++..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 4445555554442 112223333 4455555555554421 122233344455555555554421 22223
Q ss_pred CCCCCCCEEeccCCcCc
Q 006940 489 GQLTALRRLNLNGNTLS 505 (624)
Q Consensus 489 ~~l~~L~~L~Ls~N~l~ 505 (624)
..+++|+.|+|++|.++
T Consensus 190 ~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 190 KANCNLEVLDLNNNGLT 206 (319)
T ss_pred HhCCCCCEEeccCCccC
Confidence 33345555555555544
No 36
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.73 E-value=2e-05 Score=90.55 Aligned_cols=84 Identities=31% Similarity=0.393 Sum_probs=71.3
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.|+.|+|++|.|++ +|.. ..+|+.|+|++|+|+ .+|.. ..+|+.|+|++|+|+ .+|..+.++++|+.|+|+
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 37789999999985 5643 357899999999999 47754 357889999999999 899999999999999999
Q ss_pred CCcCcccCCchhh
Q 006940 501 GNTLSGRVPAALG 513 (624)
Q Consensus 501 ~N~l~g~iP~~~~ 513 (624)
+|+|+|..|..+.
T Consensus 454 ~N~Ls~~~~~~L~ 466 (788)
T PRK15387 454 GNPLSERTLQALR 466 (788)
T ss_pred CCCCCchHHHHHH
Confidence 9999999887763
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=3e-05 Score=55.57 Aligned_cols=36 Identities=44% Similarity=0.635 Sum_probs=24.3
Q ss_pred cCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCc
Q 006940 469 SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505 (624)
Q Consensus 469 ~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 505 (624)
+|++|+|++|+++ .+|..+++|++|+.|+|++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5677777777777 56666777777777777777776
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.71 E-value=1.9e-06 Score=92.30 Aligned_cols=100 Identities=34% Similarity=0.568 Sum_probs=67.9
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|+.|+++ .+|..++.|+ |+.|-+++|+++ .+|..++.+..|..||.+.|++. .+|..++.+.+|+.|++..
T Consensus 123 lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 123 LTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred HHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhh
Confidence 555667777766 4566666554 666777777776 66777776677777777777776 6677777777777777777
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|++. .+|+++.. ..|..||++.|+
T Consensus 199 n~l~-~lp~El~~--LpLi~lDfScNk 222 (722)
T KOG0532|consen 199 NHLE-DLPEELCS--LPLIRLDFSCNK 222 (722)
T ss_pred hhhh-hCCHHHhC--CceeeeecccCc
Confidence 7776 66666653 346677777776
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=2.6e-06 Score=93.46 Aligned_cols=106 Identities=22% Similarity=0.303 Sum_probs=80.0
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCC-cCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 499 (624)
.++.|+|++|.++..- .+..|++|+.|||+.|.|. .+|.- ...+ .|+.|.|++|.++ .+ ..+.+|.+|+.|||
T Consensus 188 ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-TL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-hh-hhHHhhhhhhccch
Confidence 4778999999987533 7888999999999999998 56632 2234 4999999999987 33 34678999999999
Q ss_pred cCCcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940 500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCG 532 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~ 532 (624)
++|-+++.-.-..-..+..|..|.|.|||.-|.
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999998642212222355678899999997774
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.63 E-value=2.9e-05 Score=83.82 Aligned_cols=103 Identities=26% Similarity=0.465 Sum_probs=46.9
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|++++|.+. .+|..+..|+.|+.|+++.|+++ .+|...+.++.|+.|++++|+++ .+|..+..+..|+.|.+++
T Consensus 142 L~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218 (394)
T ss_pred cccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence 444555555544 23334445555555555555555 44444334455555555555554 4444444444455555555
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
|+.. .++..+.. +..+..+.+.+|+.
T Consensus 219 N~~~-~~~~~~~~-~~~l~~l~l~~n~~ 244 (394)
T COG4886 219 NSII-ELLSSLSN-LKNLSGLELSNNKL 244 (394)
T ss_pred Ccce-ecchhhhh-cccccccccCCcee
Confidence 5322 22222222 23344444555543
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.57 E-value=2.5e-05 Score=77.71 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.++|++|.|+ .+..+..-++.++.|+||+|.+. .+. .+..|++|+.||||+|.|+ .+-..-..+-+.+.|.|+.
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 678999999987 56667777899999999999997 333 4888999999999999988 5544445677888999999
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|.+. .+ +.+.. +-+|..|++.+|+
T Consensus 362 N~iE-~L-SGL~K-LYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 362 NKIE-TL-SGLRK-LYSLVNLDLSSNQ 385 (490)
T ss_pred hhHh-hh-hhhHh-hhhheeccccccc
Confidence 9875 21 23443 5678889999986
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=4.9e-06 Score=73.75 Aligned_cols=100 Identities=29% Similarity=0.401 Sum_probs=78.0
Q ss_pred EEEcCCCCCccCCC---cccccccccccccCcCccccccCCCCcCCC-ccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940 424 GLGLDNQGLRGFLP---NGISKLRHLQSINLSGNSIRGAIPSSLGTI-ASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (624)
Q Consensus 424 ~L~L~~n~l~g~~p---~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 499 (624)
.++|+++.|- .++ ..+.....|+.++|++|.|. .+|+.|... +.++.|+|++|.++ .+|.+++.++.|+.|++
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 4667776653 233 34556677888899999998 666666554 58999999999999 99999999999999999
Q ss_pred cCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 500 NGNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
+.|+|. ..|.-+.. +.++-.|+..+|.
T Consensus 108 ~~N~l~-~~p~vi~~-L~~l~~Lds~~na 134 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAP-LIKLDMLDSPENA 134 (177)
T ss_pred ccCccc-cchHHHHH-HHhHHHhcCCCCc
Confidence 999998 66777766 5666666666665
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.51 E-value=4.1e-05 Score=54.91 Aligned_cols=37 Identities=35% Similarity=0.625 Sum_probs=29.3
Q ss_pred cccccccCcCccccccCCCCcCCCccCCeEeccCCCCC
Q 006940 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481 (624)
Q Consensus 444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~ 481 (624)
++|+.|+|++|+++ .+|+.+++|++|+.|+|++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 36888888888888 67767888999999999999887
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.25 E-value=9.3e-05 Score=79.90 Aligned_cols=102 Identities=32% Similarity=0.533 Sum_probs=49.1
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|++++|.+. .+|...+.++.|+.|++++|++. .+|..+..+..|+.|.+++|.+. .++..+.++.++..|.+.+
T Consensus 165 L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 165 LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSN 241 (394)
T ss_pred ccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCC
Confidence 445555555554 23333334555555555555555 44444444444555555555433 3444455555555555555
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|++. .+|..+.. +..++.|++++|.
T Consensus 242 n~~~-~~~~~~~~-l~~l~~L~~s~n~ 266 (394)
T COG4886 242 NKLE-DLPESIGN-LSNLETLDLSNNQ 266 (394)
T ss_pred ceee-eccchhcc-ccccceecccccc
Confidence 5554 22333322 3345555555554
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.06 E-value=0.00022 Score=83.76 Aligned_cols=102 Identities=29% Similarity=0.359 Sum_probs=65.8
Q ss_pred EEEEEcCCCC--CccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940 422 IDGLGLDNQG--LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (624)
Q Consensus 422 l~~L~L~~n~--l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 499 (624)
+++|-+..|. +.-.....|..|+.|+.|||++|.=-+.+|..++.|-+|++|+|++..+. .+|..+.+|..|.+|++
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNL 625 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecc
Confidence 5566666665 32222223666777777777777666677777777777777777777777 77777777777777777
Q ss_pred cCCcCcccCCchhhhccCCCCEEecc
Q 006940 500 NGNTLSGRVPAALGGRLLHRASFNFT 525 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~~l~l~ 525 (624)
..+.....+|.... .+.+|+.|.+.
T Consensus 626 ~~~~~l~~~~~i~~-~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 626 EVTGRLESIPGILL-ELQSLRVLRLP 650 (889)
T ss_pred ccccccccccchhh-hcccccEEEee
Confidence 77655444433332 25566666543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.60 E-value=0.00017 Score=79.73 Aligned_cols=95 Identities=26% Similarity=0.386 Sum_probs=70.6
Q ss_pred EcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccc-cCCCCCCCEEeccCCcC
Q 006940 426 GLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLTALRRLNLNGNTL 504 (624)
Q Consensus 426 ~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~-l~~l~~L~~L~Ls~N~l 504 (624)
+.+.|.|. .+..++.-|+.|+.|||++|+++..- .+..|+.|++|||++|.|. .+|.. ...+ .|+.|.|++|.+
T Consensus 170 ~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 170 SFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNAL 244 (1096)
T ss_pred hcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHH
Confidence 33444443 23456777899999999999998432 7888999999999999999 67753 2333 499999999998
Q ss_pred cccCCchhhhccCCCCEEeccCCC
Q 006940 505 SGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 505 ~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
+. + ..+.+ +.+|..||++.|-
T Consensus 245 ~t-L-~gie~-LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 245 TT-L-RGIEN-LKSLYGLDLSYNL 265 (1096)
T ss_pred Hh-h-hhHHh-hhhhhccchhHhh
Confidence 72 2 22333 6778889999985
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.48 E-value=0.0014 Score=77.19 Aligned_cols=82 Identities=33% Similarity=0.431 Sum_probs=73.7
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.+..|+|++|.=-+.+|..++.|-+|++|+|++..+. .+|..+++|..|.+||+..+.-...+|..+..|++|++|.|-
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 4788999998878899999999999999999999999 899999999999999999988766777777789999999886
Q ss_pred CCc
Q 006940 501 GNT 503 (624)
Q Consensus 501 ~N~ 503 (624)
.-.
T Consensus 651 ~s~ 653 (889)
T KOG4658|consen 651 RSA 653 (889)
T ss_pred ccc
Confidence 554
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0013 Score=69.12 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=33.9
Q ss_pred EEEEcCCCCCccCCCcccccccccccccCcCccccccCC--CCcCCCccCCeEeccCCCCCC-CCccc-----cCCCCCC
Q 006940 423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP--SSLGTIASLEVLDLSYNFFNG-SIPES-----LGQLTAL 494 (624)
Q Consensus 423 ~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip--~~l~~l~~L~~LdLs~N~l~g-~iP~~-----l~~l~~L 494 (624)
+.|.|..|+..+.......-+..|+.|||++|++- ..+ ..++.|+.|+.|+++.+.+.. .+|+. ...+++|
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 33444444322222223333444555555555443 122 233444555555555554431 11221 2334455
Q ss_pred CEEeccCCcC
Q 006940 495 RRLNLNGNTL 504 (624)
Q Consensus 495 ~~L~Ls~N~l 504 (624)
+.|+++.|++
T Consensus 304 ~~L~i~~N~I 313 (505)
T KOG3207|consen 304 EYLNISENNI 313 (505)
T ss_pred eeeecccCcc
Confidence 5555555554
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.29 E-value=0.0017 Score=70.59 Aligned_cols=80 Identities=30% Similarity=0.375 Sum_probs=57.4
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|.+|.|..... .+..|.+|+.|+|++|+|+... .+..|..|+.|++++|.++ .+. .+..+.+|+.+++++
T Consensus 97 l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 97 LEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLSY 171 (414)
T ss_pred eeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcch-hcc-CCccchhhhcccCCc
Confidence 6778888888875433 2667888888888888887443 3566777888888888877 333 344577888888888
Q ss_pred CcCcc
Q 006940 502 NTLSG 506 (624)
Q Consensus 502 N~l~g 506 (624)
|.+..
T Consensus 172 n~i~~ 176 (414)
T KOG0531|consen 172 NRIVD 176 (414)
T ss_pred chhhh
Confidence 88873
No 50
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=96.27 E-value=0.0045 Score=44.03 Aligned_cols=35 Identities=43% Similarity=0.935 Sum_probs=23.8
Q ss_pred hHHHHHHHHhhhccCC-CC--CCCCCC----CCCCCCCCCCCCcccc
Q 006940 373 PEEVRALQVLKNSLDL-PH--RFGWNG----DPCVPQQHPWSGADCQ 412 (624)
Q Consensus 373 ~~~~~aL~~~k~~~~~-~~--~~~W~~----~~c~~~~~~w~gv~C~ 412 (624)
++|+.||++||.++.. +. ..+|+. +|| .|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-----~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-----SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-----CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-----eeccEEeC
Confidence 5789999999999984 42 348963 566 59999995
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.96 E-value=0.0021 Score=69.88 Aligned_cols=100 Identities=32% Similarity=0.474 Sum_probs=74.4
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
+..+.+..|.+.- +-..+..+++|+.|+|..|++. .+...+..|.+|++|+|++|.++... .+..++.|+.|++++
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheecc
Confidence 3445566666553 3345778899999999999999 44444788999999999999998433 356677799999999
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|.++ .+.. +.. +..|+.+++++|.
T Consensus 150 N~i~-~~~~-~~~-l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 150 NLIS-DISG-LES-LKSLKLLDLSYNR 173 (414)
T ss_pred Ccch-hccC-Ccc-chhhhcccCCcch
Confidence 9998 3332 222 5677888888886
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.61 E-value=0.011 Score=58.50 Aligned_cols=97 Identities=24% Similarity=0.309 Sum_probs=55.3
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCc--cccccCCCCcCCCccCCeEeccCCCCCCCCccc---cCCCCCCCE
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGN--SIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES---LGQLTALRR 496 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N--~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~---l~~l~~L~~ 496 (624)
++.|++.+..++.. ..+-.|++|+.|.|+.| +..+.++...-.+++|++|+|+.|++.- ++. +..+.+|..
T Consensus 45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKS 120 (260)
T ss_pred hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhh
Confidence 34444444444421 13445677788888888 5555566556666788888888887751 333 334556667
Q ss_pred EeccCCcCcccCC---chhhhccCCCCEEe
Q 006940 497 LNLNGNTLSGRVP---AALGGRLLHRASFN 523 (624)
Q Consensus 497 L~Ls~N~l~g~iP---~~~~~~l~~l~~l~ 523 (624)
|++.+|.-+. +- ..++.++++|..|+
T Consensus 121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcccCCccc-cccHHHHHHHHhhhhcccc
Confidence 7777776553 11 12333455555554
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.0066 Score=63.91 Aligned_cols=107 Identities=22% Similarity=0.251 Sum_probs=71.4
Q ss_pred EEEEEEcCCCCCccC-CCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCc--cccCCCCCCCEE
Q 006940 421 VIDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRL 497 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~-~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP--~~l~~l~~L~~L 497 (624)
+++.|.|++++|++. +...+..+++|..|+|+.|..-+.-......+..|+.|||++|++- ..+ ..++.++.|..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence 477788888888853 2334456788888888888633333344555778888888888876 444 446778888888
Q ss_pred eccCCcCcc-cCCch----hhhccCCCCEEeccCCC
Q 006940 498 NLNGNTLSG-RVPAA----LGGRLLHRASFNFTDNA 528 (624)
Q Consensus 498 ~Ls~N~l~g-~iP~~----~~~~l~~l~~l~l~~N~ 528 (624)
+++.+.++. .+|+. .......|+.|++..|+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 888887752 12322 01234567888888776
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.92 E-value=0.023 Score=54.17 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=23.1
Q ss_pred EEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCC
Q 006940 424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481 (624)
Q Consensus 424 ~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~ 481 (624)
.++|++|.+.- -..|..+.+|+.|.|++|+|+..-|.--..+++|+.|.|.+|++.
T Consensus 46 ~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 46 AIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred eecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 35555555431 112334444555555555554222222222334444444444443
No 55
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.59 E-value=0.012 Score=35.26 Aligned_cols=12 Identities=58% Similarity=0.573 Sum_probs=4.9
Q ss_pred CCeEeccCCCCC
Q 006940 470 LEVLDLSYNFFN 481 (624)
Q Consensus 470 L~~LdLs~N~l~ 481 (624)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444444
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.56 E-value=0.045 Score=52.23 Aligned_cols=82 Identities=23% Similarity=0.335 Sum_probs=60.6
Q ss_pred ccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCc--ccCCchhhhccCCCC
Q 006940 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS--GRVPAALGGRLLHRA 520 (624)
Q Consensus 443 L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~--g~iP~~~~~~l~~l~ 520 (624)
+.+...+||+.|.+- .+ ..|..++.|..|.|++|+++..-|.--.-+++|+.|.|.+|++. |.+-. +. .++.|+
T Consensus 41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La-~~p~L~ 116 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LA-SCPKLE 116 (233)
T ss_pred ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hc-cCCccc
Confidence 346778999999986 33 36778899999999999999555554445678999999999986 12211 12 246788
Q ss_pred EEeccCCC
Q 006940 521 SFNFTDNA 528 (624)
Q Consensus 521 ~l~l~~N~ 528 (624)
.|.+-+|+
T Consensus 117 ~Ltll~Np 124 (233)
T KOG1644|consen 117 YLTLLGNP 124 (233)
T ss_pred eeeecCCc
Confidence 88888887
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=0.01 Score=59.57 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=39.8
Q ss_pred CCCCcccccCCCCceeEEEEEEcCCCCCccCCCcccccccccccccCcCcccccc-CCCCcCCCccCCeEeccCCCC
Q 006940 405 PWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFF 480 (624)
Q Consensus 405 ~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~l 480 (624)
.|.-+.|-... ..+++.|+|+.|.|+..|-..-.-+.+|+.|-|.+..|.-. ....+..++.++.|.+|.|++
T Consensus 85 dWseI~~ile~---lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 85 DWSEIGAILEQ---LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred cHHHHHHHHhc---CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 47766664332 22467777777777644332223445666666665555322 223455566666777766643
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.17 E-value=0.018 Score=34.47 Aligned_cols=22 Identities=41% Similarity=0.801 Sum_probs=16.2
Q ss_pred ccccccCcCccccccCCCCcCCC
Q 006940 445 HLQSINLSGNSIRGAIPSSLGTI 467 (624)
Q Consensus 445 ~L~~L~Ls~N~l~g~ip~~l~~l 467 (624)
+|+.|||++|+|+ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4778888888888 777776653
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.00 E-value=0.04 Score=54.57 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=60.8
Q ss_pred CCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC--CCCCCCccccCCCCCCCEEeccCCcCcccCCchhh
Q 006940 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN--FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALG 513 (624)
Q Consensus 436 ~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N--~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~ 513 (624)
+....-.+..|+.|.+.+..++ .+ ..+..|++|+.|++|.| +..+.++-..-.+++|++|+|++|++. +++.+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLR 110 (260)
T ss_pred cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccc
Confidence 3333444566777777777766 22 25667889999999999 666777766667799999999999986 233332
Q ss_pred h--ccCCCCEEeccCCC
Q 006940 514 G--RLLHRASFNFTDNA 528 (624)
Q Consensus 514 ~--~l~~l~~l~l~~N~ 528 (624)
. .+.+|..|++.+|.
T Consensus 111 pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCS 127 (260)
T ss_pred hhhhhcchhhhhcccCC
Confidence 1 24556777776654
No 60
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.61 E-value=0.0054 Score=59.47 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=73.8
Q ss_pred eEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940 420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (624)
Q Consensus 420 ~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 499 (624)
.+++.|+|+.|.+. .+-..|..|+.|..|+|+-|++. -+|..++++..+..+++..|.++ ..|.+.+.++.++.+++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 36888999999875 34557888999999999999998 78999999999999999999998 88999999999999999
Q ss_pred cCCcCc
Q 006940 500 NGNTLS 505 (624)
Q Consensus 500 s~N~l~ 505 (624)
-.|.|.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 999886
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.14 E-value=0.03 Score=56.36 Aligned_cols=85 Identities=25% Similarity=0.264 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCCcc--CCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCC-CccccCCCCCCCEE
Q 006940 421 VIDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRRL 497 (624)
Q Consensus 421 ~l~~L~L~~n~l~g--~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~-iP~~l~~l~~L~~L 497 (624)
+|..++|.+|.|+. .+..-+.+|+.|+.|+|+.|.|+..|-..-..+.+|+.|-|.+-.|... .-..+..++.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 47789999999873 3444567889999999999999865543224567888888888777643 33556778888889
Q ss_pred eccCCcCc
Q 006940 498 NLNGNTLS 505 (624)
Q Consensus 498 ~Ls~N~l~ 505 (624)
+++.|++.
T Consensus 152 HmS~N~~r 159 (418)
T KOG2982|consen 152 HMSDNSLR 159 (418)
T ss_pred hhccchhh
Confidence 99888553
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.14 E-value=0.26 Score=52.85 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=7.2
Q ss_pred CCCEEeccCCcCc
Q 006940 493 ALRRLNLNGNTLS 505 (624)
Q Consensus 493 ~L~~L~Ls~N~l~ 505 (624)
+|+.|++++|...
T Consensus 157 SLk~L~Is~c~~i 169 (426)
T PRK15386 157 SLKTLSLTGCSNI 169 (426)
T ss_pred cccEEEecCCCcc
Confidence 4566666655543
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.31 E-value=0.43 Score=51.21 Aligned_cols=11 Identities=9% Similarity=0.169 Sum_probs=6.1
Q ss_pred CCCEEeccCCC
Q 006940 518 HRASFNFTDNA 528 (624)
Q Consensus 518 ~l~~l~l~~N~ 528 (624)
+|+.|++++|.
T Consensus 157 SLk~L~Is~c~ 167 (426)
T PRK15386 157 SLKTLSLTGCS 167 (426)
T ss_pred cccEEEecCCC
Confidence 45556665544
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=90.22 E-value=0.3 Score=50.41 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=51.1
Q ss_pred EEEEEEcCCCCCccCCCcc----cccccccccccCcCcccccc-------------CCCCcCCCccCCeEeccCCCCCCC
Q 006940 421 VIDGLGLDNQGLRGFLPNG----ISKLRHLQSINLSGNSIRGA-------------IPSSLGTIASLEVLDLSYNFFNGS 483 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~----~~~L~~L~~L~Ls~N~l~g~-------------ip~~l~~l~~L~~LdLs~N~l~g~ 483 (624)
+++.|+||.|.+.-..+.. +.++..|+.|.|.+|.+.-. ...-.++-+.|+++...+|++.-.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 4888999999887555543 45678888999988887521 112234446677777777776521
Q ss_pred C----ccccCCCCCCCEEeccCCcC
Q 006940 484 I----PESLGQLTALRRLNLNGNTL 504 (624)
Q Consensus 484 i----P~~l~~l~~L~~L~Ls~N~l 504 (624)
- -..+...+.|+.+.++.|.+
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I 197 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGI 197 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccc
Confidence 1 12233345555555555554
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.05 E-value=0.16 Score=28.26 Aligned_cols=12 Identities=50% Similarity=0.584 Sum_probs=4.1
Q ss_pred CCeEeccCCCCC
Q 006940 470 LEVLDLSYNFFN 481 (624)
Q Consensus 470 L~~LdLs~N~l~ 481 (624)
|+.|+|++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.68 E-value=0.035 Score=55.37 Aligned_cols=62 Identities=23% Similarity=0.268 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccC-CCCcCCCccCCeEeccCCCCCCCCc
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI-PSSLGTIASLEVLDLSYNFFNGSIP 485 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~l~g~iP 485 (624)
|+.|.|+-|.|+..-| +..+++|+.|+|..|.|...- -..+.+|++|+.|-|..|.-.|.-+
T Consensus 43 lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 43 LEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred ceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 5556666666654322 445566666666666554111 1234455555555555555554443
No 67
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.65 E-value=0.17 Score=58.32 Aligned_cols=57 Identities=23% Similarity=0.361 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccc-cCCCCcCCCccCCeEeccCCCC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFF 480 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~LdLs~N~l 480 (624)
|..||+++.+++-. .++++|++|+.|.+.+=.+.. ..-..+.+|++|+.||+|....
T Consensus 175 L~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 175 LRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred cceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 44455555544422 344445555554444333321 0011344455555555554443
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.82 E-value=0.012 Score=57.03 Aligned_cols=87 Identities=18% Similarity=0.196 Sum_probs=74.2
Q ss_pred ccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCC
Q 006940 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518 (624)
Q Consensus 439 ~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~ 518 (624)
++....+.+.|||+.|++- .+-..+..++.|..|||+.|++. .+|..++.+..+..+++..|+++ ..|.+... .++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k-~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK-EPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc-cCC
Confidence 6777889999999999997 56667888999999999999988 88998999999999999999998 77888765 677
Q ss_pred CCEEeccCCCC
Q 006940 519 RASFNFTDNAG 529 (624)
Q Consensus 519 l~~l~l~~N~~ 529 (624)
++.+++-+|++
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 77777777763
No 69
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=88.68 E-value=0.17 Score=44.51 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=17.5
Q ss_pred CCceEEEEhhhHHHHHHHHHHHHHHHHHHHhhH
Q 006940 544 STSAKIGIGFGVLGLIFLLIICSMVWWKRRQNI 576 (624)
Q Consensus 544 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~ 576 (624)
....+++|++|+++++++++++++++.+|+|||
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334556677777766665555555555555444
No 70
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.44 E-value=0.22 Score=57.51 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=75.3
Q ss_pred EEEEEEcCCCCCccC-CCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCC-CCccccCCCCCCCEEe
Q 006940 421 VIDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLN 498 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~-~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g-~iP~~l~~l~~L~~L~ 498 (624)
.|++|.+.+-.+... +-.-..++++|..||+|+.+++- + ..+++|.+|+.|-+.+=.+.- ..-..+-+|++|++||
T Consensus 149 sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 149 SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred ccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 377788877666432 33345678999999999999983 3 678899999999988877662 2223577899999999
Q ss_pred ccCCcCccc--CCc---hhhhccCCCCEEeccCCC
Q 006940 499 LNGNTLSGR--VPA---ALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 499 Ls~N~l~g~--iP~---~~~~~l~~l~~l~l~~N~ 528 (624)
+|..+.... +.. +.+..++.|+.||.++..
T Consensus 227 IS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 227 ISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 998876522 111 123346788999988753
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.12 E-value=0.32 Score=27.09 Aligned_cols=17 Identities=41% Similarity=0.747 Sum_probs=10.3
Q ss_pred CCCCEEeccCCcCcccCC
Q 006940 492 TALRRLNLNGNTLSGRVP 509 (624)
Q Consensus 492 ~~L~~L~Ls~N~l~g~iP 509 (624)
++|+.|+|++|+|+ .+|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 46899999999987 444
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.34 E-value=0.49 Score=47.32 Aligned_cols=83 Identities=29% Similarity=0.351 Sum_probs=49.1
Q ss_pred EEEEEcCCCCCccCC----CcccccccccccccCcCccccccC----C-------CCcCCCccCCeEeccCCCCCCCCcc
Q 006940 422 IDGLGLDNQGLRGFL----PNGISKLRHLQSINLSGNSIRGAI----P-------SSLGTIASLEVLDLSYNFFNGSIPE 486 (624)
Q Consensus 422 l~~L~L~~n~l~g~~----p~~~~~L~~L~~L~Ls~N~l~g~i----p-------~~l~~l~~L~~LdLs~N~l~g~iP~ 486 (624)
++.++||+|.|...- ...+.+-.+|+..+++.- ++|.. + +.+-.|+.|+..+||.|.|....|+
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 455777777765432 223444455655555432 22222 1 2345677788888888877766663
Q ss_pred ----ccCCCCCCCEEeccCCcCc
Q 006940 487 ----SLGQLTALRRLNLNGNTLS 505 (624)
Q Consensus 487 ----~l~~l~~L~~L~Ls~N~l~ 505 (624)
.++..+.|.+|.|++|.+-
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCC
Confidence 3456677888888877663
No 73
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=86.27 E-value=0.48 Score=32.81 Aligned_cols=8 Identities=25% Similarity=0.028 Sum_probs=2.9
Q ss_pred EEhhhHHH
Q 006940 550 GIGFGVLG 557 (624)
Q Consensus 550 ~i~~~~~~ 557 (624)
++++.+++
T Consensus 16 ~VvVPV~v 23 (40)
T PF08693_consen 16 GVVVPVGV 23 (40)
T ss_pred EEEechHH
Confidence 33333333
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.60 E-value=0.72 Score=28.55 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=9.9
Q ss_pred CCCCEEeccCCcCcccCCch
Q 006940 492 TALRRLNLNGNTLSGRVPAA 511 (624)
Q Consensus 492 ~~L~~L~Ls~N~l~g~iP~~ 511 (624)
++|+.|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 44555555555555 44443
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.60 E-value=0.72 Score=28.55 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=9.9
Q ss_pred CCCCEEeccCCcCcccCCch
Q 006940 492 TALRRLNLNGNTLSGRVPAA 511 (624)
Q Consensus 492 ~~L~~L~Ls~N~l~g~iP~~ 511 (624)
++|+.|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 44555555555555 44443
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.37 E-value=1.3 Score=39.08 Aligned_cols=99 Identities=15% Similarity=0.258 Sum_probs=52.6
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.+.+.. .+...-...|.++++|+.+.+..+ +...-...|.++.+|+.+.+.+ .+...-...+..+++|+.+++..
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 56677764 565555557788888888888775 5544455677887888888865 44322234566788888888876
Q ss_pred CcCcccCCchhhhccCCCCEEeccC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTD 526 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~ 526 (624)
| +. .++....... .++.+.+.+
T Consensus 91 ~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 91 N-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T--B-EEHTTTTTT--T--EEE-TT
T ss_pred c-cc-EEchhhhcCC-CceEEEECC
Confidence 5 44 4444443333 566666554
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.34 E-value=0.72 Score=28.55 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=13.5
Q ss_pred CccCCeEeccCCCCCCCCcc
Q 006940 467 IASLEVLDLSYNFFNGSIPE 486 (624)
Q Consensus 467 l~~L~~LdLs~N~l~g~iP~ 486 (624)
|++|+.|+|++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 456788888888877 5554
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.34 E-value=0.72 Score=28.55 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=13.5
Q ss_pred CccCCeEeccCCCCCCCCcc
Q 006940 467 IASLEVLDLSYNFFNGSIPE 486 (624)
Q Consensus 467 l~~L~~LdLs~N~l~g~iP~ 486 (624)
|++|+.|+|++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 456788888888877 5554
No 79
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=84.30 E-value=0.64 Score=46.48 Aligned_cols=140 Identities=17% Similarity=0.174 Sum_probs=80.4
Q ss_pred cEEEccCCCCCCCCCCCCceeeccCCcc------CCcccccC-C-CCCCCCCcceeeeecCCCCCCceEEeecCCCceeE
Q 006940 27 AMRISCGARQNIHSPPTNTLWFKDFAYT------GGIPANAT-R-PSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYN 98 (624)
Q Consensus 27 ~~~I~CG~~~~~~~~~~~~~w~~D~~~~------~g~~~~~~-~-~~~~~~~y~t~R~F~~~~~~~~~Y~~~~~~~g~y~ 98 (624)
...++||.... +|..|+.|-.|..-. -|....+. + .......|+|+|+-.. .|.|..|+...|.|-
T Consensus 61 I~aVncGgdaa--vd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~nee----tFgyd~pik~dgdya 134 (355)
T KOG3593|consen 61 IPAVNCGGDAA--VDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE----TFGYDVPIKEDGDYA 134 (355)
T ss_pred hheeccCChhh--hcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchh----hhcccccccCCCcee
Confidence 46699998765 366789999884211 12211111 1 1122357999999643 578999999999998
Q ss_pred EEEEEecccCCCCCCCCcEEEEEc-CeEEEEeecCCCCcccc--eeEEEEEE-e--------------eCCeEEEEEeeC
Q 006940 99 VRIFFGLVTLTSFDHEPLFDISVE-GTQIYSLKSGWSDHDDR--AFAEALVF-L--------------RDGTVSICFHST 160 (624)
Q Consensus 99 vRl~F~~~~y~~~~~~~~Fdv~~~-~~~~~~v~~~~~~~~~~--~~~E~~~~-~--------------~~~~l~i~f~~~ 160 (624)
+=+-|...+++. ...-.|||.++ .-....-++.|+..+++ .--|++.. + ..+++.|.|.+.
T Consensus 135 lvlkfaevyF~~-~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~~i~~gkls~~gess~~t~gkl~le~~kg 213 (355)
T KOG3593|consen 135 LVLKFAEVYFKT-CQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPCLIGQGKLSVCGESSISTLGKLNLEFLKG 213 (355)
T ss_pred hhhhHHHHHHHh-hhhhheeeeeccceeEEeccchhhhcCCCcccccceEEEEEcCceEEEEeeeEEeecceEEEEeecc
Confidence 889998665442 23347999998 42212222334433311 11122221 2 225566666655
Q ss_pred CCCCCcEeeEEEE
Q 006940 161 GHGDPAILSLEIL 173 (624)
Q Consensus 161 ~~~~pfIsaIEl~ 173 (624)
....|-+++..|.
T Consensus 214 ~ldnpk~~a~aIl 226 (355)
T KOG3593|consen 214 VLDNPKDCARAIL 226 (355)
T ss_pred cCCChhhhhHHHh
Confidence 5566666655544
No 80
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.61 E-value=0.068 Score=53.38 Aligned_cols=97 Identities=26% Similarity=0.265 Sum_probs=73.6
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCc--cccCCCCCCCEEec
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRLNL 499 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP--~~l~~l~~L~~L~L 499 (624)
+..|++-+++|+.. ....+++.|+.|.||-|+++..- .+..|++|++|+|..|.+. .+- ..+.++++|+.|.|
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhh
Confidence 56677777777632 12347889999999999998433 4778999999999999887 443 35789999999999
Q ss_pred cCCcCcccCCchhh----hccCCCCEEe
Q 006940 500 NGNTLSGRVPAALG----GRLLHRASFN 523 (624)
Q Consensus 500 s~N~l~g~iP~~~~----~~l~~l~~l~ 523 (624)
..|.-.|.-+.... ..+++|+.|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999988765432 2366777664
No 81
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=83.52 E-value=1.4 Score=44.13 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=63.5
Q ss_pred EEEEEEcCCCCCccCCCcc----cccccccccccCcCccccccCC--------------CCcCCCccCCeEeccCCCCCC
Q 006940 421 VIDGLGLDNQGLRGFLPNG----ISKLRHLQSINLSGNSIRGAIP--------------SSLGTIASLEVLDLSYNFFNG 482 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~----~~~L~~L~~L~Ls~N~l~g~ip--------------~~l~~l~~L~~LdLs~N~l~g 482 (624)
+++.++||.|.+....|+. +++-+.|.+|.|++|.+. ++- .-..+-+.|+..+...|+|.
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 4777888888888777765 345577888888888775 221 12234567888888888776
Q ss_pred CCcc-----ccCCCCCCCEEeccCCcCcccCCchhhh-------ccCCCCEEeccCCC
Q 006940 483 SIPE-----SLGQLTALRRLNLNGNTLSGRVPAALGG-------RLLHRASFNFTDNA 528 (624)
Q Consensus 483 ~iP~-----~l~~l~~L~~L~Ls~N~l~g~iP~~~~~-------~l~~l~~l~l~~N~ 528 (624)
.-|. .+.....|+.+.+..|-+. |..+.. .+.+|+.|++.+|-
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccc
Confidence 2221 1222246677777777665 442211 13456777777775
No 82
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=82.21 E-value=0.5 Score=42.95 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=10.0
Q ss_pred CceEEEEhhhHHHHHHHH
Q 006940 545 TSAKIGIGFGVLGLIFLL 562 (624)
Q Consensus 545 ~~~~~~i~~~~~~~~~~~ 562 (624)
+..++++++|+.+.++++
T Consensus 48 knIVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLG 65 (154)
T ss_pred ccEEEEEEecccHHHHHH
Confidence 345677777755444433
No 83
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=82.21 E-value=0.14 Score=52.80 Aligned_cols=108 Identities=19% Similarity=0.335 Sum_probs=77.7
Q ss_pred EEEEEEcCCCCCcc----CCCcccccccccccccCcCcccccc----CCCCcCCCccCCeEeccCCCCCCCCc----ccc
Q 006940 421 VIDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIP----ESL 488 (624)
Q Consensus 421 ~l~~L~L~~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~iP----~~l 488 (624)
.++.+.++.|+|.- .+...+..+++|+.|||..|-|+-. +-..+..++.|+.|+++++.+.-.=- +.+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 47778888888752 2344688999999999999998743 23556778899999999999873222 112
Q ss_pred -CCCCCCCEEeccCCcCccc----CCchhhhccCCCCEEeccCCCC
Q 006940 489 -GQLTALRRLNLNGNTLSGR----VPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 489 -~~l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
...++|++|.|.+|.++-. +-..+.. .+.|..|++++|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 2468999999999999632 1112222 46788999999985
No 84
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=79.94 E-value=0.56 Score=47.82 Aligned_cols=12 Identities=0% Similarity=0.058 Sum_probs=0.0
Q ss_pred hhccccchhhhh
Q 006940 591 KARTHLSHDIQL 602 (624)
Q Consensus 591 ~~r~~~~~ei~~ 602 (624)
....++-.|+.+
T Consensus 190 GiPvIF~dElee 201 (290)
T PF05454_consen 190 GIPVIFQDELEE 201 (290)
T ss_dssp ------------
T ss_pred CCceeccccccc
Confidence 343455556555
No 85
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.52 E-value=4.4 Score=35.52 Aligned_cols=85 Identities=12% Similarity=0.204 Sum_probs=49.6
Q ss_pred ccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCC
Q 006940 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 518 (624)
Q Consensus 439 ~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~ 518 (624)
.|.++.+|+.+.+.. .+...-...|.++.+|+.+++..+ +...-...+.++++|+.+.+.. .+. .++........+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 567778899998874 566455667888989999999886 6633335677887899999975 333 344444444567
Q ss_pred CCEEeccCC
Q 006940 519 RASFNFTDN 527 (624)
Q Consensus 519 l~~l~l~~N 527 (624)
++.+.+..+
T Consensus 83 l~~i~~~~~ 91 (129)
T PF13306_consen 83 LKNIDIPSN 91 (129)
T ss_dssp ECEEEETTT
T ss_pred ccccccCcc
Confidence 777777554
No 86
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=75.09 E-value=2.2 Score=29.09 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=10.3
Q ss_pred EEEhhhHHHHHHHHHHHHHH
Q 006940 549 IGIGFGVLGLIFLLIICSMV 568 (624)
Q Consensus 549 ~~i~~~~~~~~~~~~~~~~~ 568 (624)
+++++++++.++++++++++
T Consensus 6 IaIIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFY 25 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444444
No 87
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=71.90 E-value=0.14 Score=51.82 Aligned_cols=85 Identities=24% Similarity=0.257 Sum_probs=49.6
Q ss_pred EEEEEEcCCCCCccC-CCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCC-CCCC-CccccCCCCCCCEE
Q 006940 421 VIDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-FNGS-IPESLGQLTALRRL 497 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~-~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~-l~g~-iP~~l~~l~~L~~L 497 (624)
+++.|+|++..|+.. +..-+..+.+|+.|.|.+++|...|-..++.=.+|+.|||+... |+.. .---+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466777777776532 23345567777777788887777766666666667777766543 2210 01123455556666
Q ss_pred eccCCcCc
Q 006940 498 NLNGNTLS 505 (624)
Q Consensus 498 ~Ls~N~l~ 505 (624)
+|+-..++
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 66555443
No 88
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=71.71 E-value=4.2 Score=41.86 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Q 006940 556 LGLIFLLIICSMVWWKRRQNILRA 579 (624)
Q Consensus 556 ~~~~~~~~~~~~~~~~~r~~~~~~ 579 (624)
+++|+++++++++++.|||+|.+.
T Consensus 266 liIVLIMvIIYLILRYRRKKKmkK 289 (299)
T PF02009_consen 266 LIIVLIMVIIYLILRYRRKKKMKK 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Confidence 333444444555666666555443
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=69.49 E-value=3.2 Score=53.90 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=25.1
Q ss_pred eccCCCCCCCCccccCCCCCCCEEeccCCcCc
Q 006940 474 DLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505 (624)
Q Consensus 474 dLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 505 (624)
||++|+|+-.-+..|..+++|+.|+|++|.|.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68888888444467778888888888888885
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.07 E-value=3.2 Score=25.97 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=8.7
Q ss_pred cCCeEeccCCCCCCCCcc
Q 006940 469 SLEVLDLSYNFFNGSIPE 486 (624)
Q Consensus 469 ~L~~LdLs~N~l~g~iP~ 486 (624)
+|+.|++++|+|+ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 3555555555555 4443
No 91
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=67.94 E-value=0.33 Score=49.12 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=60.9
Q ss_pred EEEEEEcCCCC-Ccc-CCCcccccccccccccCcCccccccCCCC-cCC-CccCCeEeccCCC--CCC-CCccccCCCCC
Q 006940 421 VIDGLGLDNQG-LRG-FLPNGISKLRHLQSINLSGNSIRGAIPSS-LGT-IASLEVLDLSYNF--FNG-SIPESLGQLTA 493 (624)
Q Consensus 421 ~l~~L~L~~n~-l~g-~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~-l~~-l~~L~~LdLs~N~--l~g-~iP~~l~~l~~ 493 (624)
.++.|+|+.++ ++. .+.--+.++++|..|+|+.+.++...-.. +.. -..|..|+|++.. |.- -+..-...+++
T Consensus 235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~ 314 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN 314 (419)
T ss_pred cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence 37778887754 221 11223667888999999988887554211 111 1467778887653 211 11122346789
Q ss_pred CCEEeccCCcC-cccCCchhhhccCCCCEEeccCC
Q 006940 494 LRRLNLNGNTL-SGRVPAALGGRLLHRASFNFTDN 527 (624)
Q Consensus 494 L~~L~Ls~N~l-~g~iP~~~~~~l~~l~~l~l~~N 527 (624)
|.+|||+.|.. +-..-..+.. ++.|++|.++.+
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRC 348 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRC 348 (419)
T ss_pred eeeeccccccccCchHHHHHHh-cchheeeehhhh
Confidence 99999987753 3211122222 566778877654
No 92
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=67.17 E-value=3.5 Score=34.91 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=10.0
Q ss_pred CCCceEEEEhhhHHHHH
Q 006940 543 LSTSAKIGIGFGVLGLI 559 (624)
Q Consensus 543 ~~~~~~~~i~~~~~~~~ 559 (624)
++...+.+|++++++++
T Consensus 63 ls~gaiagi~vg~~~~v 79 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVV 79 (96)
T ss_pred cccccEEEEEeehhhHH
Confidence 34456777777655444
No 93
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.17 E-value=1.8 Score=26.18 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=7.0
Q ss_pred CCCCEEeccCCcCcc
Q 006940 492 TALRRLNLNGNTLSG 506 (624)
Q Consensus 492 ~~L~~L~Ls~N~l~g 506 (624)
++|+.|+|++|+++.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 445555555555543
No 94
>PF15102 TMEM154: TMEM154 protein family
Probab=63.64 E-value=3.8 Score=37.12 Aligned_cols=10 Identities=10% Similarity=-0.151 Sum_probs=4.7
Q ss_pred EEEEhhhHHH
Q 006940 548 KIGIGFGVLG 557 (624)
Q Consensus 548 ~~~i~~~~~~ 557 (624)
+++|++..++
T Consensus 58 iLmIlIP~VL 67 (146)
T PF15102_consen 58 ILMILIPLVL 67 (146)
T ss_pred EEEEeHHHHH
Confidence 4555555333
No 95
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=62.08 E-value=2.4 Score=36.37 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=0.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHH
Q 006940 553 FGVLGLIFLLIICSMVWWKRRQNILR 578 (624)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~r~~~~~ 578 (624)
+++.++++.+++++-||++|||...+
T Consensus 29 IGiL~VILgiLLliGCWYckRRSGYk 54 (118)
T PF14991_consen 29 IGILIVILGILLLIGCWYCKRRSGYK 54 (118)
T ss_dssp SS------------------------
T ss_pred ceeHHHHHHHHHHHhheeeeecchhh
Confidence 33333344444444466666665433
No 96
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=61.15 E-value=3.8 Score=42.57 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=19.4
Q ss_pred CCEEeccCCCCCCCCCCCCCCCCCCCCceEEEEhhhHHHHHHHH
Q 006940 519 RASFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGFGVLGLIFLL 562 (624)
Q Consensus 519 l~~l~l~~N~~lc~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~ 562 (624)
++-+++.++.+ +. ...|..+.. ..++.|++|++++++++
T Consensus 248 vQaF~~~~~~F--g~--a~~C~~D~~-~~~vPIaVG~~La~lvl 286 (306)
T PF01299_consen 248 VQAFRVKNNTF--GT--AEECSSDDT-SDLVPIAVGAALAGLVL 286 (306)
T ss_pred EEEEEecCCCC--CC--hhcCCcCCc-cchHHHHHHHHHHHHHH
Confidence 34455555553 11 235765443 45566666655544333
No 97
>PTZ00046 rifin; Provisional
Probab=58.95 E-value=8.8 Score=40.23 Aligned_cols=23 Identities=13% Similarity=0.443 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Q 006940 557 GLIFLLIICSMVWWKRRQNILRA 579 (624)
Q Consensus 557 ~~~~~~~~~~~~~~~~r~~~~~~ 579 (624)
++|++.+++++++|.|||++.++
T Consensus 326 VIVLIMvIIYLILRYRRKKKMkK 348 (358)
T PTZ00046 326 VIVLIMVIIYLILRYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHHHHHHHhhhcchhHH
Confidence 33444455555666677666554
No 98
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=58.11 E-value=9.4 Score=39.89 Aligned_cols=22 Identities=14% Similarity=0.513 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 006940 558 LIFLLIICSMVWWKRRQNILRA 579 (624)
Q Consensus 558 ~~~~~~~~~~~~~~~r~~~~~~ 579 (624)
++++.++++++++.|||++.++
T Consensus 322 IVLIMvIIYLILRYRRKKKMkK 343 (353)
T TIGR01477 322 IVLIMVIIYLILRYRRKKKMKK 343 (353)
T ss_pred HHHHHHHHHHHHHhhhcchhHH
Confidence 3344455555666666666554
No 99
>PF15345 TMEM51: Transmembrane protein 51
Probab=57.57 E-value=29 Score=34.00 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=12.7
Q ss_pred eEEEEhhhHHHHHHHHHHHHHHHHHHHhhH
Q 006940 547 AKIGIGFGVLGLIFLLIICSMVWWKRRQNI 576 (624)
Q Consensus 547 ~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~ 576 (624)
..++.+++++.++++++-+|+.++.|||++
T Consensus 58 ~SVAyVLVG~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 58 FSVAYVLVGSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred EEEEEehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 334333333333344444445555444443
No 100
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=56.61 E-value=4.7 Score=32.41 Aligned_cols=16 Identities=13% Similarity=-0.209 Sum_probs=12.0
Q ss_pred cchhhhhhcccCCCCC
Q 006940 596 LSHDIQLARHYNHHGN 611 (624)
Q Consensus 596 ~~~ei~~at~~f~~~~ 611 (624)
+|++..+|-.-|...+
T Consensus 58 TYEDP~qAV~eFAkEI 73 (75)
T PF14575_consen 58 TYEDPNQAVREFAKEI 73 (75)
T ss_dssp GSSSHHHHHHHCSSB-
T ss_pred cccCHHHHHHHHHhhc
Confidence 6888888888887653
No 101
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=56.01 E-value=9 Score=23.97 Aligned_cols=14 Identities=50% Similarity=0.541 Sum_probs=6.9
Q ss_pred ccCCeEeccCCCCC
Q 006940 468 ASLEVLDLSYNFFN 481 (624)
Q Consensus 468 ~~L~~LdLs~N~l~ 481 (624)
.+|+.|+|+.|.++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555443
No 102
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=55.79 E-value=11 Score=36.50 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=11.7
Q ss_pred eEEEEhhhHHHHHHHHHHHHHHH
Q 006940 547 AKIGIGFGVLGLIFLLIICSMVW 569 (624)
Q Consensus 547 ~~~~i~~~~~~~~~~~~~~~~~~ 569 (624)
+++++++|++++++++++++++.
T Consensus 39 I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHHH
Confidence 44555555555555544444443
No 103
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=54.32 E-value=12 Score=33.54 Aligned_cols=19 Identities=5% Similarity=0.261 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q 006940 561 LLIICSMVWWKRRQNILRA 579 (624)
Q Consensus 561 ~~~~~~~~~~~~r~~~~~~ 579 (624)
+++++++++++++|+++++
T Consensus 11 ~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 11 AILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3344444555667776554
No 104
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.09 E-value=10 Score=23.98 Aligned_cols=12 Identities=58% Similarity=0.575 Sum_probs=5.5
Q ss_pred cCCeEeccCCCC
Q 006940 469 SLEVLDLSYNFF 480 (624)
Q Consensus 469 ~L~~LdLs~N~l 480 (624)
+|+.|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344444444444
No 105
>PHA03265 envelope glycoprotein D; Provisional
Probab=48.86 E-value=18 Score=37.52 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=7.9
Q ss_pred EEECCeecccCC
Q 006940 305 ILINGDIAFQGV 316 (624)
Q Consensus 305 V~ing~~~~~~~ 316 (624)
|.|||...+.+|
T Consensus 189 I~Ing~v~yTDF 200 (402)
T PHA03265 189 IEIDGRRIYTDF 200 (402)
T ss_pred EEECCEEEEEEE
Confidence 677887665544
No 106
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=48.80 E-value=5.3 Score=30.73 Aligned_cols=10 Identities=10% Similarity=-0.217 Sum_probs=0.0
Q ss_pred EEEhhhHHHH
Q 006940 549 IGIGFGVLGL 558 (624)
Q Consensus 549 ~~i~~~~~~~ 558 (624)
.+++++++++
T Consensus 12 aavIaG~Vvg 21 (64)
T PF01034_consen 12 AAVIAGGVVG 21 (64)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 107
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.23 E-value=3.2 Score=39.95 Aligned_cols=81 Identities=25% Similarity=0.222 Sum_probs=47.9
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccC-CCCcC-CCccCCeEeccCCC-CCCCCccccCCCCCCCEE
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI-PSSLG-TIASLEVLDLSYNF-FNGSIPESLGQLTALRRL 497 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~i-p~~l~-~l~~L~~LdLs~N~-l~g~iP~~l~~l~~L~~L 497 (624)
.++.++-++..|...--..+..|++|+.|.+.++.--+.- -..++ -.++|+.|+|+.|. ++..=-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4888999888887655556667777777777665421100 00011 24678888888763 442222345566777766
Q ss_pred eccC
Q 006940 498 NLNG 501 (624)
Q Consensus 498 ~Ls~ 501 (624)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6643
No 108
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=48.16 E-value=11 Score=31.13 Aligned_cols=6 Identities=0% Similarity=0.180 Sum_probs=2.4
Q ss_pred chhhhh
Q 006940 597 SHDIQL 602 (624)
Q Consensus 597 ~~ei~~ 602 (624)
.+|+..
T Consensus 78 ~reLva 83 (98)
T PF07204_consen 78 HRELVA 83 (98)
T ss_pred HHHHHH
Confidence 344443
No 109
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=47.88 E-value=18 Score=40.70 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=5.8
Q ss_pred EEEECCeec
Q 006940 304 DILINGDIA 312 (624)
Q Consensus 304 ~V~ing~~~ 312 (624)
..++||..+
T Consensus 87 ~~~LnGt~~ 95 (684)
T PF12877_consen 87 SGFLNGTEV 95 (684)
T ss_pred ceeeccHHH
Confidence 457788654
No 110
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=46.24 E-value=13 Score=37.58 Aligned_cols=7 Identities=43% Similarity=1.208 Sum_probs=3.0
Q ss_pred HHHHHHh
Q 006940 568 VWWKRRQ 574 (624)
Q Consensus 568 ~~~~~r~ 574 (624)
+|.+|||
T Consensus 280 iWlyrrR 286 (295)
T TIGR01478 280 IWLYRRR 286 (295)
T ss_pred HHHHHhh
Confidence 4444444
No 111
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=45.43 E-value=5.3 Score=27.27 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=13.3
Q ss_pred eEEEEhhhHHHHHHHHHHHHHHHHHHHh
Q 006940 547 AKIGIGFGVLGLIFLLIICSMVWWKRRQ 574 (624)
Q Consensus 547 ~~~~i~~~~~~~~~~~~~~~~~~~~~r~ 574 (624)
.+.+++++.++ +++.+....|++||.+
T Consensus 8 IIv~V~vg~~i-iii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 8 IIVAVVVGMAI-IIICMFYYACCYKKHR 34 (38)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHcccc
Confidence 33444444444 4445555555555444
No 112
>PTZ00370 STEVOR; Provisional
Probab=44.77 E-value=14 Score=37.40 Aligned_cols=7 Identities=43% Similarity=1.208 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 006940 568 VWWKRRQ 574 (624)
Q Consensus 568 ~~~~~r~ 574 (624)
+|.+|||
T Consensus 276 iwlyrrR 282 (296)
T PTZ00370 276 IWLYRRR 282 (296)
T ss_pred HHHHHhh
Confidence 3444443
No 113
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=41.77 E-value=23 Score=29.00 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhhH
Q 006940 560 FLLIICSMVWWKRRQNI 576 (624)
Q Consensus 560 ~~~~~~~~~~~~~r~~~ 576 (624)
+++++++++++++|||.
T Consensus 45 il~VilwfvCC~kRkrs 61 (94)
T PF05393_consen 45 ILLVILWFVCCKKRKRS 61 (94)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 34444444444444443
No 114
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=39.28 E-value=17 Score=34.83 Aligned_cols=28 Identities=21% Similarity=0.629 Sum_probs=14.8
Q ss_pred eEEEEhhhHHHHHHHHHHHHHHHHHHHh
Q 006940 547 AKIGIGFGVLGLIFLLIICSMVWWKRRQ 574 (624)
Q Consensus 547 ~~~~i~~~~~~~~~~~~~~~~~~~~~r~ 574 (624)
..++|++-++++++++++++++++.||+
T Consensus 158 ~~laI~lPvvv~~~~~~~~~~~~~~R~~ 185 (189)
T PF14610_consen 158 YALAIALPVVVVVLALIMYGFFFWNRKK 185 (189)
T ss_pred eeEEEEccHHHHHHHHHHHhhheeeccc
Confidence 4555655555555555555555554443
No 115
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=38.23 E-value=18 Score=31.80 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 006940 556 LGLIFLLIICSMVWW 570 (624)
Q Consensus 556 ~~~~~~~~~~~~~~~ 570 (624)
+++++.++..+++|+
T Consensus 88 v~lVl~llsg~lv~r 102 (129)
T PF12191_consen 88 VVLVLALLSGFLVWR 102 (129)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333334444
No 116
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.69 E-value=15 Score=40.59 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=38.5
Q ss_pred cccccccccCcCccccccCCCCcC----CCccCCeEeccCC--CCCCCCccccCCC--CCCCEEeccCCcCccc
Q 006940 442 KLRHLQSINLSGNSIRGAIPSSLG----TIASLEVLDLSYN--FFNGSIPESLGQL--TALRRLNLNGNTLSGR 507 (624)
Q Consensus 442 ~L~~L~~L~Ls~N~l~g~ip~~l~----~l~~L~~LdLs~N--~l~g~iP~~l~~l--~~L~~L~Ls~N~l~g~ 507 (624)
+.+.+..++|++|+|.. +. .+. ..++|..|+|++| .+. .-.++.++ ..|+.|-|.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~-Ld-~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYH-LD-ALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhc-hh-hhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 34567788899999862 21 122 2478899999999 332 11122222 3477888999988643
No 117
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=36.83 E-value=3.2e+02 Score=24.67 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=42.3
Q ss_pred cCCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEE---EeecCCCC-------cccceeEEEE--EEeeCCe---EEE
Q 006940 91 RVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIY---SLKSGWSD-------HDDRAFAEAL--VFLRDGT---VSI 155 (624)
Q Consensus 91 ~~~~g~y~vRl~F~~~~y~~~~~~~~Fdv~~~~~~~~---~v~~~~~~-------~~~~~~~E~~--~~~~~~~---l~i 155 (624)
.....+|-||+.++- +....+.+..++.... ++....+. .....+.|+. +...... +.|
T Consensus 48 ~~~~~~YrIRiRYAs------~~~~~~~i~~~~~~~~~~~~~~~T~~~~~~~~~~y~~F~y~~~~~~~~~~~~~~~~~~i 121 (143)
T PF03944_consen 48 NSSSQKYRIRIRYAS------NSNGTLSISINNSSGNLSFNFPSTMSNGDNLTLNYESFQYVEFPTPFTFSSNQSITITI 121 (143)
T ss_dssp SSSTEEEEEEEEEEE------SS-EEEEEEETTEEEECEEEE--SSSTTGGCCETGGG-EEEEESSEEEESTSEEEEEEE
T ss_pred CCCCceEEEEEEEEE------CCCcEEEEEECCccceeeeeccccccCCCccccccceeEeeecCceEEecCCCceEEEE
Confidence 345689999999883 2234677777765432 22222222 1123455543 2233333 555
Q ss_pred EEeeCCC-CCCcEeeEEEEEcC
Q 006940 156 CFHSTGH-GDPAILSLEILQVD 176 (624)
Q Consensus 156 ~f~~~~~-~~pfIsaIEl~~l~ 176 (624)
.+.+... +.=+|-.||+.|+.
T Consensus 122 ~i~~~~~~~~v~IDkIEFIPv~ 143 (143)
T PF03944_consen 122 SIQNISSNGNVYIDKIEFIPVN 143 (143)
T ss_dssp EEESSTTTS-EEEEEEEEEECT
T ss_pred EEEecCCCCeEEEEeEEEEeCC
Confidence 5554444 44568899999864
No 118
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=36.31 E-value=41 Score=34.44 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=11.1
Q ss_pred CCCCCceEEEEhhhHHHH
Q 006940 541 PHLSTSAKIGIGFGVLGL 558 (624)
Q Consensus 541 ~~~~~~~~~~i~~~~~~~ 558 (624)
++.....++.|.+++++.
T Consensus 222 ~~l~~G~VVlIslAiALG 239 (281)
T PF12768_consen 222 KKLSRGFVVLISLAIALG 239 (281)
T ss_pred ccccceEEEEEehHHHHH
Confidence 455666777777665543
No 119
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=35.45 E-value=64 Score=31.19 Aligned_cols=16 Identities=19% Similarity=0.193 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 006940 560 FLLIICSMVWWKRRQN 575 (624)
Q Consensus 560 ~~~~~~~~~~~~~r~~ 575 (624)
++++..+++++.||..
T Consensus 115 a~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 115 AILLGAGYCCHQRRSW 130 (202)
T ss_pred HHHHHHHHHhhhhccC
Confidence 3333333445555443
No 120
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=34.93 E-value=3e+02 Score=23.73 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=42.3
Q ss_pred ccEEE-eecCCCCcEEEEEEEEeecCCCCCCceEEEEEEECC--eecccCCceeeecCCceeeEEEEEEEeeeCeeEEEE
Q 006940 269 DLQYT-MDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILING--DIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVT 345 (624)
Q Consensus 269 ~lt~~-~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing--~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~l~i~ 345 (624)
.+.|. .++...+.|.+.+..+--. +.+.+.|+||| ......+++.. +++-..-......+....|+-.|.
T Consensus 33 ~~~~~~Vd~~~~g~y~~~~~~a~~~------~~~~~~l~id~~~g~~~~~~~~~~-tg~w~~~~~~~~~v~l~~G~h~i~ 105 (125)
T PF03422_consen 33 WIEYNNVDVPEAGTYTLTIRYANGG------GGGTIELRIDGPDGTLIGTVSLPP-TGGWDTWQTVSVSVKLPAGKHTIY 105 (125)
T ss_dssp EEEEEEEEESSSEEEEEEEEEEESS------SSEEEEEEETTTTSEEEEEEEEE--ESSTTEEEEEEEEEEEESEEEEEE
T ss_pred EEEEEEEeeCCCceEEEEEEEECCC------CCcEEEEEECCCCCcEEEEEEEcC-CCCccccEEEEEEEeeCCCeeEEE
Confidence 48888 8888889999998887632 22888999999 23444555533 333211122223444444554454
Q ss_pred eC
Q 006940 346 LH 347 (624)
Q Consensus 346 ~~ 347 (624)
|.
T Consensus 106 l~ 107 (125)
T PF03422_consen 106 LV 107 (125)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 121
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=33.81 E-value=50 Score=23.93 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 006940 568 VWWKRRQ 574 (624)
Q Consensus 568 ~~~~~r~ 574 (624)
.++++||
T Consensus 29 ~~~~~~k 35 (49)
T PF05545_consen 29 AYRPRNK 35 (49)
T ss_pred HHcccch
Confidence 3333333
No 122
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=33.51 E-value=33 Score=34.27 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=3.4
Q ss_pred cchhhhhh
Q 006940 596 LSHDIQLA 603 (624)
Q Consensus 596 ~~~ei~~a 603 (624)
.-.|.++|
T Consensus 120 ~qq~~~ea 127 (279)
T PF07271_consen 120 SQQEETEA 127 (279)
T ss_pred HHHHHHHH
Confidence 33344444
No 123
>PRK06764 hypothetical protein; Provisional
Probab=30.76 E-value=45 Score=27.10 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.7
Q ss_pred ceEEeecCCCceeEEEEE
Q 006940 85 NCYIINRVPKGHYNVRIF 102 (624)
Q Consensus 85 ~~Y~~~~~~~g~y~vRl~ 102 (624)
+.||+...++|+|.||..
T Consensus 74 nkyti~f~kpg~yvirvn 91 (105)
T PRK06764 74 NKYTIRFSKPGKYVIRVN 91 (105)
T ss_pred eeeEEEecCCccEEEEEc
Confidence 689998899999999973
No 124
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.32 E-value=21 Score=37.96 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=20.2
Q ss_pred hhccccchhhhhhcccCCCCCcc
Q 006940 591 KARTHLSHDIQLARHYNHHGNAR 613 (624)
Q Consensus 591 ~~r~~~~~ei~~at~~f~~~~~~ 613 (624)
..+.|+|.|++.|||||++.+.-
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~i 83 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLI 83 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcce
Confidence 67789999999999999987754
No 125
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=28.56 E-value=19 Score=39.37 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=0.0
Q ss_pred EEEhhhHHHHHH
Q 006940 549 IGIGFGVLGLIF 560 (624)
Q Consensus 549 ~~i~~~~~~~~~ 560 (624)
++++++++++++
T Consensus 355 l~vVlgvavliv 366 (439)
T PF02480_consen 355 LGVVLGVAVLIV 366 (439)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 333334333333
No 126
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.59 E-value=1.5e+02 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=16.0
Q ss_pred CCCceEEEEhhhHHHHHHHHHHHHHHHH
Q 006940 543 LSTSAKIGIGFGVLGLIFLLIICSMVWW 570 (624)
Q Consensus 543 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 570 (624)
.+...++.++++..+++++++..+++.+
T Consensus 10 lnPGlIVLlvV~g~ll~flvGnyvlY~Y 37 (69)
T PF04689_consen 10 LNPGLIVLLVVAGLLLVFLVGNYVLYVY 37 (69)
T ss_pred CCCCeEEeehHHHHHHHHHHHHHHHHHH
Confidence 4455677777766665555554444433
No 127
>PF15102 TMEM154: TMEM154 protein family
Probab=25.44 E-value=23 Score=32.18 Aligned_cols=18 Identities=6% Similarity=-0.197 Sum_probs=8.7
Q ss_pred CceEEEEhhhHHHHHHHH
Q 006940 545 TSAKIGIGFGVLGLIFLL 562 (624)
Q Consensus 545 ~~~~~~i~~~~~~~~~~~ 562 (624)
...+++-.+..+++++++
T Consensus 58 iLmIlIP~VLLvlLLl~v 75 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSV 75 (146)
T ss_pred EEEEeHHHHHHHHHHHHH
Confidence 455555544444444433
No 128
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.66 E-value=35 Score=37.87 Aligned_cols=62 Identities=29% Similarity=0.264 Sum_probs=40.2
Q ss_pred EEEEEEcCCCCCccC--CCcccccccccccccCcCc--cccccCCCCcCCC--ccCCeEeccCCCCCCCC
Q 006940 421 VIDGLGLDNQGLRGF--LPNGISKLRHLQSINLSGN--SIRGAIPSSLGTI--ASLEVLDLSYNFFNGSI 484 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~--~p~~~~~L~~L~~L~Ls~N--~l~g~ip~~l~~l--~~L~~LdLs~N~l~g~i 484 (624)
.|..++|++|+|.-. +..--..-++|..|+|++| .+. --.++.++ ..|++|-|.+|.+....
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccch
Confidence 488899999998632 1111233578999999999 332 12233332 35888999999887543
No 129
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=22.58 E-value=1.1e+02 Score=40.06 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=6.5
Q ss_pred ccCCCCCCCCC
Q 006940 524 FTDNAGLCGIP 534 (624)
Q Consensus 524 l~~N~~lc~~~ 534 (624)
..+|.++|.||
T Consensus 3919 p~~n~f~CnC~ 3929 (4289)
T KOG1219|consen 3919 PFYNGFLCNCP 3929 (4289)
T ss_pred ecCCCeeEeCC
Confidence 45566667664
No 130
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.25 E-value=54 Score=43.43 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=27.9
Q ss_pred cCcCccccccCCCCcCCCccCCeEeccCCCCC
Q 006940 450 NLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481 (624)
Q Consensus 450 ~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~ 481 (624)
||++|+|+-.-+..|..|.+|+.|+|++|.|.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999665677888999999999999876
No 131
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.95 E-value=64 Score=34.88 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=16.7
Q ss_pred CCCCceEEEEhhhHHHHHHHHHHHHHHHHH
Q 006940 542 HLSTSAKIGIGFGVLGLIFLLIICSMVWWK 571 (624)
Q Consensus 542 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 571 (624)
.++...|.+|+|+++++|- .++.+++||.
T Consensus 363 ~LstgaIaGIsvavvvvVg-glvGfLcWwf 391 (397)
T PF03302_consen 363 GLSTGAIAGISVAVVVVVG-GLVGFLCWWF 391 (397)
T ss_pred cccccceeeeeehhHHHHH-HHHHHHhhhe
Confidence 4566778888777665443 2334455553
No 132
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=21.33 E-value=54 Score=35.71 Aligned_cols=85 Identities=27% Similarity=0.287 Sum_probs=49.2
Q ss_pred EEEEEEcCCC-CCccCCC----cccccccccccccCcCcc-ccccCCCCcCC-CccCCeEeccCCC-CCCC-CccccCCC
Q 006940 421 VIDGLGLDNQ-GLRGFLP----NGISKLRHLQSINLSGNS-IRGAIPSSLGT-IASLEVLDLSYNF-FNGS-IPESLGQL 491 (624)
Q Consensus 421 ~l~~L~L~~n-~l~g~~p----~~~~~L~~L~~L~Ls~N~-l~g~ip~~l~~-l~~L~~LdLs~N~-l~g~-iP~~l~~l 491 (624)
.++.|+++++ ......+ .....+.+|+.|+|+... ++...=..+.. +++|+.|.+.++. ++.. +-.....+
T Consensus 215 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~ 294 (482)
T KOG1947|consen 215 NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERC 294 (482)
T ss_pred hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhc
Confidence 4778888763 2111111 234456888899988877 43222122222 6788998877665 3421 11223456
Q ss_pred CCCCEEeccCCcCc
Q 006940 492 TALRRLNLNGNTLS 505 (624)
Q Consensus 492 ~~L~~L~Ls~N~l~ 505 (624)
++|+.|+|+.+...
T Consensus 295 ~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 295 PSLRELDLSGCHGL 308 (482)
T ss_pred CcccEEeeecCccc
Confidence 77999999876553
No 133
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=20.07 E-value=80 Score=20.58 Aligned_cols=7 Identities=29% Similarity=0.615 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 006940 567 MVWWKRR 573 (624)
Q Consensus 567 ~~~~~~r 573 (624)
+++++||
T Consensus 26 ~~~~~rk 32 (34)
T TIGR01167 26 LLLRKRK 32 (34)
T ss_pred HHheecc
Confidence 3333333
Done!