Query 006940
Match_columns 624
No_of_seqs 520 out of 3969
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 12:59:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwp_A Malectin, MGC80075; sug 99.9 5.8E-27 2E-31 221.5 4.4 154 193-364 5-171 (174)
2 2jwp_A Malectin, MGC80075; sug 99.8 3.2E-20 1.1E-24 175.3 14.8 140 27-176 7-172 (174)
3 1ogq_A PGIP-2, polygalacturona 99.7 6.2E-18 2.1E-22 175.1 10.3 155 370-530 2-162 (313)
4 4ecn_A Leucine-rich repeat pro 99.7 8.9E-17 3E-21 187.3 10.8 148 372-528 267-526 (876)
5 4eco_A Uncharacterized protein 99.6 2.3E-16 7.8E-21 179.2 10.0 145 373-528 29-284 (636)
6 1w8a_A SLIT protein; signaling 99.6 5.7E-15 1.9E-19 141.6 9.6 129 404-533 8-142 (192)
7 3rgz_A Protein brassinosteroid 99.5 5.5E-15 1.9E-19 171.5 5.9 118 421-541 633-750 (768)
8 2wfh_A SLIT homolog 2 protein 99.5 3.2E-14 1.1E-18 136.6 10.0 128 404-533 10-142 (193)
9 2o6r_A Variable lymphocyte rec 99.5 4.2E-14 1.4E-18 133.4 9.7 129 404-533 7-140 (177)
10 3rgz_A Protein brassinosteroid 99.5 1.7E-14 5.8E-19 167.4 7.6 148 371-529 9-190 (768)
11 2v70_A SLIT-2, SLIT homolog 2 99.5 7.8E-14 2.7E-18 136.6 9.2 110 422-532 59-168 (220)
12 3e6j_A Variable lymphocyte rec 99.5 2E-13 7E-18 134.5 11.7 124 405-530 20-148 (229)
13 4fcg_A Uncharacterized protein 99.5 2.1E-14 7.2E-19 149.5 4.0 156 370-528 23-194 (328)
14 2v9t_B SLIT homolog 2 protein 99.4 2E-13 6.9E-18 133.7 9.9 106 422-528 34-139 (220)
15 2o6s_A Variable lymphocyte rec 99.4 5.3E-13 1.8E-17 129.1 11.5 126 404-530 7-137 (208)
16 3g39_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 123.2 11.0 107 423-533 12-118 (170)
17 2v9t_B SLIT homolog 2 protein 99.4 8E-13 2.7E-17 129.4 10.4 112 421-533 57-168 (220)
18 1ogq_A PGIP-2, polygalacturona 99.4 1.6E-13 5.5E-18 141.8 4.1 114 422-539 199-312 (313)
19 3e6j_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 128.4 10.6 111 421-533 65-175 (229)
20 2r9u_A Variable lymphocyte rec 99.4 2E-12 7E-17 121.7 11.2 107 423-533 15-121 (174)
21 2v70_A SLIT-2, SLIT homolog 2 99.4 1.5E-12 5E-17 127.5 10.0 127 404-531 11-143 (220)
22 3rfs_A Internalin B, repeat mo 99.3 2.9E-12 1E-16 129.4 11.8 112 422-534 111-222 (272)
23 3m19_A Variable lymphocyte rec 99.3 4E-12 1.4E-16 126.8 11.3 110 422-532 85-194 (251)
24 4g8a_A TOLL-like receptor 4; l 99.3 1.5E-12 5E-17 146.7 8.9 113 421-533 470-583 (635)
25 1p9a_G Platelet glycoprotein I 99.3 6.3E-12 2.1E-16 128.4 11.0 110 422-533 102-211 (290)
26 2ifg_A High affinity nerve gro 99.3 5.9E-12 2E-16 131.7 9.5 105 425-533 13-119 (347)
27 2o6q_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 124.4 11.3 112 421-533 110-221 (270)
28 2je0_A Acidic leucine-rich nuc 99.3 4.8E-12 1.6E-16 115.5 6.9 105 421-528 18-124 (149)
29 3v47_A TOLL-like receptor 5B a 99.3 8.3E-12 2.8E-16 135.3 9.4 113 421-534 300-412 (455)
30 4fcg_A Uncharacterized protein 99.3 9.8E-12 3.4E-16 129.3 9.4 110 422-534 185-294 (328)
31 1w8a_A SLIT protein; signaling 99.2 1E-11 3.6E-16 118.7 8.6 90 421-510 55-144 (192)
32 3m19_A Variable lymphocyte rec 99.2 2.2E-11 7.4E-16 121.5 11.1 107 422-529 61-167 (251)
33 2z66_A Variable lymphocyte rec 99.2 8.2E-12 2.8E-16 128.1 7.7 112 422-533 152-264 (306)
34 1ozn_A Reticulon 4 receptor; N 99.2 1.3E-11 4.3E-16 125.4 8.6 111 422-533 131-241 (285)
35 2o6s_A Variable lymphocyte rec 99.2 3.9E-11 1.3E-15 115.9 11.0 112 421-533 53-164 (208)
36 2o6q_A Variable lymphocyte rec 99.2 5.1E-11 1.8E-15 120.1 11.8 134 393-528 6-144 (270)
37 2ell_A Acidic leucine-rich nuc 99.2 1.6E-11 5.4E-16 114.5 7.1 104 422-528 26-131 (168)
38 3g39_A Variable lymphocyte rec 99.2 2.1E-11 7.3E-16 114.2 8.0 106 404-509 9-119 (170)
39 3vq2_A TLR4, TOLL-like recepto 99.2 1.6E-11 5.3E-16 138.2 8.3 113 421-534 449-562 (606)
40 2z81_A CD282 antigen, TOLL-lik 99.2 1.7E-11 5.8E-16 136.2 8.4 110 421-531 27-137 (549)
41 2xot_A Amphoterin-induced prot 99.2 3.2E-11 1.1E-15 127.0 9.3 126 404-530 18-149 (361)
42 1dce_A Protein (RAB geranylger 99.2 3.3E-11 1.1E-15 134.5 9.9 102 422-529 443-545 (567)
43 3rfs_A Internalin B, repeat mo 99.2 6.8E-11 2.3E-15 119.3 11.1 109 421-530 86-194 (272)
44 2z63_A TOLL-like receptor 4, v 99.2 4.5E-11 1.5E-15 133.2 9.7 113 421-534 422-535 (570)
45 2xot_A Amphoterin-induced prot 99.2 5.4E-11 1.8E-15 125.3 9.8 106 422-528 66-174 (361)
46 4g8a_A TOLL-like receptor 4; l 99.2 3.6E-11 1.2E-15 135.3 9.0 108 421-529 53-160 (635)
47 3zyj_A Leucine-rich repeat-con 99.2 4.7E-11 1.6E-15 129.2 9.2 110 421-533 186-295 (440)
48 1p9a_G Platelet glycoprotein I 99.2 9.8E-11 3.4E-15 119.5 11.0 108 421-530 78-185 (290)
49 4b8c_D Glucose-repressible alc 99.1 5.3E-11 1.8E-15 136.9 9.3 102 422-528 226-327 (727)
50 3zyi_A Leucine-rich repeat-con 99.1 4.8E-11 1.6E-15 129.6 8.4 110 421-533 197-306 (452)
51 3j0a_A TOLL-like receptor 5; m 99.1 2.2E-11 7.6E-16 142.7 6.1 108 421-534 452-564 (844)
52 1ozn_A Reticulon 4 receptor; N 99.1 1.4E-10 4.9E-15 117.5 10.0 109 421-530 106-214 (285)
53 2z62_A TOLL-like receptor 4, v 99.1 1.8E-10 6.2E-15 116.3 10.6 108 421-529 77-189 (276)
54 2z80_A TOLL-like receptor 2, v 99.1 8.2E-11 2.8E-15 123.3 8.0 107 421-528 53-160 (353)
55 3v47_A TOLL-like receptor 5B a 99.1 1.2E-10 4E-15 126.2 9.1 109 421-530 276-384 (455)
56 2je0_A Acidic leucine-rich nuc 99.1 3.7E-11 1.3E-15 109.5 4.2 103 421-526 43-149 (149)
57 2id5_A Lingo-1, leucine rich r 99.1 1.4E-10 4.9E-15 126.5 9.5 123 405-528 12-139 (477)
58 3zyi_A Leucine-rich repeat-con 99.1 1.7E-10 5.8E-15 125.2 10.1 120 406-526 56-180 (452)
59 2r9u_A Variable lymphocyte rec 99.1 1.5E-10 5.2E-15 108.8 8.3 87 421-507 34-120 (174)
60 3t6q_A CD180 antigen; protein- 99.1 9.7E-11 3.3E-15 131.7 8.1 111 421-533 450-563 (606)
61 4ezg_A Putative uncharacterize 99.1 1E-10 3.5E-15 112.1 7.0 103 422-528 68-170 (197)
62 2z66_A Variable lymphocyte rec 99.1 2.3E-10 8E-15 117.2 10.2 110 422-532 128-238 (306)
63 2ell_A Acidic leucine-rich nuc 99.1 7.4E-11 2.5E-15 109.8 5.5 106 421-529 50-159 (168)
64 3vq2_A TLR4, TOLL-like recepto 99.1 2.6E-10 9E-15 128.2 11.0 90 422-511 82-172 (606)
65 2id5_A Lingo-1, leucine rich r 99.1 1.1E-10 3.8E-15 127.4 7.4 112 421-533 225-336 (477)
66 3t6q_A CD180 antigen; protein- 99.1 2.7E-10 9.2E-15 128.1 10.3 110 421-531 34-143 (606)
67 2z62_A TOLL-like receptor 4, v 99.1 2.6E-10 8.7E-15 115.1 9.1 106 422-528 54-160 (276)
68 4eco_A Uncharacterized protein 99.1 6.1E-11 2.1E-15 134.5 4.9 107 421-529 207-342 (636)
69 2wfh_A SLIT homolog 2 protein 99.1 5E-10 1.7E-14 107.1 10.5 102 424-530 14-115 (193)
70 2ifg_A High affinity nerve gro 99.1 2.3E-10 7.9E-15 119.5 8.7 103 404-507 8-118 (347)
71 1wwl_A Monocyte differentiatio 99.0 6.1E-11 2.1E-15 122.2 3.8 110 421-531 122-242 (312)
72 1dce_A Protein (RAB geranylger 99.0 3.4E-10 1.2E-14 126.3 9.2 101 421-524 464-567 (567)
73 1a9n_A U2A', U2A'; complex (nu 99.0 1.6E-10 5.5E-15 108.6 5.5 101 422-528 21-124 (176)
74 1a9n_A U2A', U2A'; complex (nu 99.0 3.6E-10 1.2E-14 106.1 8.0 104 421-528 43-151 (176)
75 4b8c_D Glucose-repressible alc 99.0 4.6E-11 1.6E-15 137.4 2.1 107 421-530 248-354 (727)
76 3oja_B Anopheles plasmodium-re 99.0 5.2E-10 1.8E-14 125.9 10.5 104 421-528 100-203 (597)
77 4ezg_A Putative uncharacterize 99.0 3.2E-10 1.1E-14 108.6 7.3 104 421-528 89-192 (197)
78 2z7x_B TOLL-like receptor 1, v 99.0 2.4E-10 8.2E-15 126.1 7.2 103 422-528 23-126 (520)
79 3zyj_A Leucine-rich repeat-con 99.0 5.4E-10 1.9E-14 120.8 9.7 121 406-527 45-170 (440)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 5.1E-10 1.7E-14 124.9 9.6 107 422-532 405-512 (562)
81 1ziw_A TOLL-like receptor 3; i 99.0 5.9E-10 2E-14 127.1 10.4 114 421-534 505-626 (680)
82 2z7x_B TOLL-like receptor 1, v 99.0 4.5E-10 1.6E-14 123.8 9.0 103 422-528 350-455 (520)
83 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 5.3E-10 1.8E-14 124.7 9.6 105 421-529 53-158 (562)
84 4ecn_A Leucine-rich repeat pro 99.0 1.3E-10 4.3E-15 135.6 4.5 107 421-529 449-585 (876)
85 3oja_A Leucine-rich immune mol 99.0 2.6E-10 8.7E-15 125.1 6.5 107 421-532 145-252 (487)
86 3o6n_A APL1; leucine-rich repe 99.0 9E-10 3.1E-14 116.9 10.2 104 421-528 94-197 (390)
87 1ziw_A TOLL-like receptor 3; i 99.0 7.6E-10 2.6E-14 126.2 10.2 106 422-528 27-132 (680)
88 2ft3_A Biglycan; proteoglycan, 99.0 9.8E-10 3.4E-14 114.0 10.1 122 404-529 33-159 (332)
89 3j0a_A TOLL-like receptor 5; m 99.0 5.9E-10 2E-14 130.6 9.2 106 422-528 50-159 (844)
90 1xku_A Decorin; proteoglycan, 99.0 1.1E-09 3.8E-14 113.4 10.4 121 404-528 31-156 (330)
91 1wwl_A Monocyte differentiatio 99.0 2E-10 7E-15 118.3 4.3 110 421-530 150-266 (312)
92 2o6r_A Variable lymphocyte rec 99.0 7.5E-10 2.6E-14 104.0 7.7 89 421-509 53-141 (177)
93 2ft3_A Biglycan; proteoglycan, 99.0 6.9E-10 2.4E-14 115.2 8.0 110 421-531 194-308 (332)
94 1xku_A Decorin; proteoglycan, 99.0 1.2E-09 4E-14 113.3 9.6 109 422-531 194-307 (330)
95 2z63_A TOLL-like receptor 4, v 99.0 1.4E-09 4.7E-14 121.1 10.7 106 422-528 78-188 (570)
96 3oja_B Anopheles plasmodium-re 99.0 1E-09 3.5E-14 123.4 9.4 107 422-529 77-183 (597)
97 3oja_A Leucine-rich immune mol 98.9 1.5E-09 5.2E-14 119.0 9.4 106 421-530 121-227 (487)
98 2xwt_C Thyrotropin receptor; s 98.9 5.9E-10 2E-14 110.0 5.1 108 421-531 32-144 (239)
99 3o53_A Protein LRIM1, AGAP0063 98.9 1E-09 3.4E-14 113.3 7.0 107 421-532 145-252 (317)
100 4glp_A Monocyte differentiatio 98.9 7.7E-10 2.6E-14 113.8 6.0 110 421-531 118-238 (310)
101 2z81_A CD282 antigen, TOLL-lik 98.9 7.1E-10 2.4E-14 123.0 5.6 107 422-528 52-159 (549)
102 2xwt_C Thyrotropin receptor; s 98.9 1.8E-09 6.1E-14 106.5 6.2 104 422-528 57-167 (239)
103 4glp_A Monocyte differentiatio 98.9 7E-10 2.4E-14 114.1 3.0 104 421-529 170-284 (310)
104 3o6n_A APL1; leucine-rich repe 98.8 2.8E-09 9.6E-14 113.1 7.7 106 422-529 71-177 (390)
105 2z80_A TOLL-like receptor 2, v 98.8 2.5E-09 8.4E-14 112.0 5.7 105 422-528 102-209 (353)
106 3o53_A Protein LRIM1, AGAP0063 98.8 4.8E-09 1.7E-13 108.1 7.8 105 422-530 122-227 (317)
107 3cvr_A Invasion plasmid antige 98.8 2.5E-09 8.4E-14 119.1 5.8 90 422-528 82-171 (571)
108 1h6t_A Internalin B; cell adhe 98.8 9.6E-09 3.3E-13 104.7 7.9 99 422-529 114-212 (291)
109 1xeu_A Internalin C; cellular 98.7 2.9E-08 9.7E-13 99.6 10.5 100 421-530 64-163 (263)
110 1m9s_A Internalin B; cell inva 98.7 1.8E-08 6.2E-13 113.1 9.6 101 421-530 110-210 (605)
111 1h6t_A Internalin B; cell adhe 98.7 1.9E-08 6.4E-13 102.5 8.9 98 422-528 92-189 (291)
112 4fmz_A Internalin; leucine ric 98.7 1.1E-08 3.9E-13 106.4 7.1 100 422-528 245-344 (347)
113 1h6u_A Internalin H; cell adhe 98.7 2.2E-08 7.6E-13 102.8 8.9 99 422-529 131-229 (308)
114 1h6u_A Internalin H; cell adhe 98.7 1.1E-08 3.6E-13 105.2 6.5 101 421-530 108-208 (308)
115 1m9s_A Internalin B; cell inva 98.7 1.9E-08 6.6E-13 112.9 8.8 81 421-507 132-212 (605)
116 1ds9_A Outer arm dynein; leuci 98.7 2E-10 7E-15 110.1 -6.3 101 422-529 50-152 (198)
117 3cvr_A Invasion plasmid antige 98.7 2.5E-08 8.4E-13 111.1 9.2 95 422-530 142-243 (571)
118 1ds9_A Outer arm dynein; leuci 98.7 3.7E-10 1.3E-14 108.2 -5.9 102 422-529 20-127 (198)
119 1xeu_A Internalin C; cellular 98.7 6.3E-08 2.1E-12 97.1 9.9 98 422-529 43-140 (263)
120 2ca6_A RAN GTPase-activating p 98.6 3.7E-09 1.3E-13 112.0 0.7 110 421-530 188-316 (386)
121 3bz5_A Internalin-J, INLJ; leu 98.6 5.6E-08 1.9E-12 105.5 10.1 98 421-531 65-162 (457)
122 4fmz_A Internalin; leucine ric 98.6 4.6E-08 1.6E-12 101.7 9.0 104 421-531 222-325 (347)
123 1o6v_A Internalin A; bacterial 98.6 3.3E-08 1.1E-12 107.5 7.4 101 422-531 289-389 (466)
124 4ay9_X Follicle-stimulating ho 98.6 2.2E-08 7.7E-13 104.7 5.1 106 404-509 9-121 (350)
125 1o6v_A Internalin A; bacterial 98.6 8E-08 2.7E-12 104.5 9.2 99 422-529 267-365 (466)
126 2ast_B S-phase kinase-associat 98.6 1.1E-08 3.8E-13 105.8 1.8 104 422-527 72-178 (336)
127 2ast_B S-phase kinase-associat 98.6 4.1E-09 1.4E-13 109.1 -1.7 84 422-505 95-182 (336)
128 1jl5_A Outer protein YOPM; leu 98.5 2.5E-08 8.5E-13 108.3 3.6 84 421-510 12-108 (454)
129 1jl5_A Outer protein YOPM; leu 98.5 2.7E-07 9.1E-12 100.1 11.3 94 422-528 155-248 (454)
130 3goz_A Leucine-rich repeat-con 98.5 1.6E-08 5.4E-13 106.3 1.4 108 422-529 53-179 (362)
131 3g06_A SSPH2 (leucine-rich rep 98.5 2.1E-07 7.1E-12 104.7 10.2 96 422-531 203-298 (622)
132 3bz5_A Internalin-J, INLJ; leu 98.5 2.7E-07 9.1E-12 100.2 10.2 80 421-509 171-250 (457)
133 2ca6_A RAN GTPase-activating p 98.5 2.1E-08 7.2E-13 106.2 0.9 109 421-529 160-286 (386)
134 3goz_A Leucine-rich repeat-con 98.4 3.9E-08 1.3E-12 103.3 1.8 109 422-530 24-151 (362)
135 3rw6_A Nuclear RNA export fact 98.3 1.1E-07 3.9E-12 95.1 1.3 81 441-523 167-257 (267)
136 4ay9_X Follicle-stimulating ho 98.3 8.4E-07 2.9E-11 92.6 6.6 102 424-529 13-116 (350)
137 3g06_A SSPH2 (leucine-rich rep 98.3 7.4E-07 2.5E-11 100.2 6.5 84 422-514 223-306 (622)
138 1z7x_W Ribonuclease inhibitor; 98.1 1.4E-07 4.8E-12 102.0 -2.9 84 422-505 258-354 (461)
139 1z7x_W Ribonuclease inhibitor; 98.1 2E-07 6.7E-12 100.8 -3.1 107 422-529 286-410 (461)
140 3un9_A NLR family member X1; l 97.9 1E-06 3.5E-11 92.9 -0.3 108 422-529 128-251 (372)
141 3rw6_A Nuclear RNA export fact 97.9 3.3E-06 1.1E-10 84.4 2.8 76 421-498 171-257 (267)
142 3un9_A NLR family member X1; l 97.8 2.7E-06 9.2E-11 89.7 -1.0 108 421-529 102-223 (372)
143 3sb4_A Hypothetical leucine ri 97.7 3.8E-05 1.3E-09 79.2 6.7 99 422-523 228-327 (329)
144 3ogk_B Coronatine-insensitive 97.7 3.3E-06 1.1E-10 94.2 -1.9 107 422-528 405-524 (592)
145 1io0_A Tropomodulin; LRR prote 97.6 7.6E-06 2.6E-10 77.2 -0.7 107 422-528 38-162 (185)
146 3sb4_A Hypothetical leucine ri 97.4 0.00016 5.3E-09 74.5 6.1 35 422-457 103-137 (329)
147 2p1m_B Transport inhibitor res 97.3 1.2E-05 4E-10 89.7 -3.6 86 441-527 429-516 (594)
148 2p1m_B Transport inhibitor res 97.2 3.8E-05 1.3E-09 85.4 -0.7 38 442-479 154-195 (594)
149 3ogk_B Coronatine-insensitive 97.2 0.00014 4.7E-09 80.9 3.7 36 422-457 194-233 (592)
150 3rfe_A Platelet glycoprotein I 97.1 0.00088 3E-08 59.1 6.9 59 472-533 12-71 (130)
151 1io0_A Tropomodulin; LRR prote 96.7 0.00012 4.1E-09 68.8 -2.1 84 422-505 67-164 (185)
152 2ra8_A Uncharacterized protein 96.5 0.00034 1.2E-08 73.1 -0.8 15 491-505 278-292 (362)
153 3e4g_A ATP synthase subunit S, 96.3 0.00049 1.7E-08 63.9 -0.6 83 421-503 62-150 (176)
154 3rfe_A Platelet glycoprotein I 96.2 0.006 2E-07 53.7 6.0 37 469-505 32-68 (130)
155 4fdw_A Leucine rich hypothetic 95.9 0.0083 2.8E-07 63.4 6.3 102 422-528 250-356 (401)
156 3e4g_A ATP synthase subunit S, 95.8 0.0026 8.9E-08 59.0 1.7 87 444-531 61-153 (176)
157 2ra8_A Uncharacterized protein 95.7 0.0038 1.3E-07 65.1 2.6 104 421-528 173-290 (362)
158 4fdw_A Leucine rich hypothetic 95.4 0.021 7.2E-07 60.3 7.0 81 422-505 273-358 (401)
159 1pgv_A TMD-1, tropomodulin TMD 93.5 0.014 4.9E-07 55.0 0.1 81 422-502 43-136 (197)
160 1pgv_A TMD-1, tropomodulin TMD 91.6 0.058 2E-06 50.8 1.6 87 442-528 39-137 (197)
161 2ks1_B Epidermal growth factor 91.1 0.041 1.4E-06 38.1 0.1 18 558-575 23-40 (44)
162 4h09_A Hypothetical leucine ri 89.9 0.42 1.4E-05 49.4 6.5 100 422-525 242-341 (379)
163 4gt6_A Cell surface protein; l 89.9 0.87 3E-05 47.4 9.0 86 438-527 282-367 (394)
164 2l2t_A Receptor tyrosine-prote 87.3 0.21 7.3E-06 34.4 1.4 19 558-576 22-40 (44)
165 4fs7_A Uncharacterized protein 86.6 0.74 2.5E-05 47.9 5.9 83 440-526 293-375 (394)
166 2jwa_A Receptor tyrosine-prote 86.1 0.1 3.5E-06 35.9 -0.7 19 558-576 23-41 (44)
167 4fs7_A Uncharacterized protein 85.9 0.74 2.5E-05 47.9 5.4 78 422-502 299-376 (394)
168 4gt6_A Cell surface protein; l 84.0 1.5 5.1E-05 45.5 6.7 80 422-504 290-369 (394)
169 2vzp_A Aocbm35, EXO-beta-D-glu 81.5 5.2 0.00018 34.2 8.1 40 269-313 40-79 (127)
170 2w3j_A Carbohydrate binding mo 80.6 25 0.00087 30.7 12.6 90 82-177 38-131 (145)
171 4h09_A Hypothetical leucine ri 80.4 3 0.0001 42.7 7.4 90 435-527 231-320 (379)
172 2w47_A Lipolytic enzyme, G-D-S 80.0 5.9 0.0002 34.7 8.1 39 269-312 41-79 (144)
173 2k1k_A Ephrin type-A receptor 77.9 0.38 1.3E-05 32.2 -0.4 29 544-572 9-37 (38)
174 2w47_A Lipolytic enzyme, G-D-S 77.6 35 0.0012 29.6 13.8 90 82-177 39-133 (144)
175 2wz8_A Cellulosome protein doc 77.4 31 0.0011 30.6 12.2 90 85-176 49-150 (156)
176 2w3j_A Carbohydrate binding mo 75.6 9.5 0.00033 33.5 8.1 39 269-312 40-78 (145)
177 2w87_A Esterase D, XYL-CBM35; 69.6 12 0.00041 32.6 7.3 39 269-312 40-78 (139)
178 2vzp_A Aocbm35, EXO-beta-D-glu 67.3 55 0.0019 27.5 12.4 87 81-172 37-127 (127)
179 2o14_A Hypothetical protein YX 67.0 27 0.00092 35.8 10.5 79 85-177 78-157 (375)
180 2w87_A Esterase D, XYL-CBM35; 62.1 77 0.0026 27.3 11.2 87 82-174 38-130 (139)
181 2wz8_A Cellulosome protein doc 61.6 12 0.00039 33.5 5.6 79 269-349 48-132 (156)
182 1iij_A ERBB-2 receptor protein 40.6 7.2 0.00025 25.3 0.4 7 567-573 28-34 (35)
183 2bgo_A Endo-B1,4-mannanase 5C; 37.5 2E+02 0.0069 24.8 10.6 90 82-179 35-126 (140)
184 2l9u_A Receptor tyrosine-prote 33.5 33 0.0011 21.9 2.6 8 567-574 27-34 (40)
185 2knc_B Integrin beta-3; transm 30.5 23 0.0008 27.6 2.0 19 551-569 13-31 (79)
186 2knc_B Integrin beta-3; transm 27.2 60 0.002 25.2 3.8 30 538-567 3-32 (79)
187 2ks1_B Epidermal growth factor 27.1 29 0.001 23.8 1.7 30 549-578 11-40 (44)
188 2y7l_A NT_ALS9-2, agglutinin-l 22.7 84 0.0029 31.1 4.8 81 127-226 218-299 (312)
No 1
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.93 E-value=5.8e-27 Score=221.54 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=115.0
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCccccccccceeccCCCCCCChHHHHHHhhhcCCCCCccEE
Q 006940 193 RTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQY 272 (624)
Q Consensus 193 ~~~~Rin~Gg~~~~~~~~~~~D~~~~dR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~Tar~~~~~~~~lt~ 272 (624)
+++|||||||+.. . |.. +|.|.+|..+...+... .....+.. .....+|..||||||.+.. +++|
T Consensus 5 ~~~~~INcGg~~~---~----d~~--gr~w~~D~~~~~~g~~~-~~~~~~~~--~~~~~~~~~lY~TaR~~~~---~~tY 69 (174)
T 2jwp_A 5 KVIWAVNAGGESH---V----DVH--GIHYRKDPLEGRVGRAS-DYGMKLPI--LRSNPEDQVLYQTERYNED---SFGY 69 (174)
T ss_dssp HEEEEEEETSSSE---E----ETT--TEEECSSCSSTTCCCCC-CCCTTSCC--SSSCHHHHHTTTCCCCCCS---CEEE
T ss_pred cEEEEEECCCCCc---c----CCC--CCEEcCCcCcccCCccc-ccccceEe--cccCCCCchhhhhhccCCC---CeEE
Confidence 5799999999753 1 222 89999986542111110 00111111 1123358899999999765 4999
Q ss_pred EeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEECCeecccCCceeeecCCceeeEEEEEEEe-------------eeC
Q 006940 273 TMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVA-------------VNG 339 (624)
Q Consensus 273 ~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~~~-------------~~~ 339 (624)
.|+++++|.|+|||||||+.. .+.++|+|||+|||++++++|||.+++|+ .+++++++.+. +.+
T Consensus 70 ~f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~-~~~~~~~~~~~v~~~~l~i~~~~~~~~ 146 (174)
T 2jwp_A 70 DIPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGH-STAHDEIIPISIKKGKLSVQGEVSTFT 146 (174)
T ss_dssp EEECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSS-SSCEEEEEEEEEETTEEEETTEEEECC
T ss_pred EEEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCC-CeeEEEEEEEEEecCceeeeeeecccC
Confidence 999999999999999999975 45899999999999999999999998876 45667766654 356
Q ss_pred eeEEEEeCCCCCchHHHHHHhhhhh
Q 006940 340 RTLTVTLHPKGGSHAIINAIEVFEI 364 (624)
Q Consensus 340 ~~l~i~~~~~~~~~p~lnaiEi~~~ 364 (624)
++|+|+|.|.....|+||||||++.
T Consensus 147 g~L~I~f~p~~~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 147 GKLSVEFVKGYYDNPKVCALFIMKG 171 (174)
T ss_dssp SEEEEEEECSSSCSSSEEEEEEESS
T ss_pred CeEEEEEeccCCCCcEEEEEEEEeC
Confidence 7899999987666799999999874
No 2
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.83 E-value=3.2e-20 Score=175.25 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=104.9
Q ss_pred cEEEccCCCCCCCCCCCCceeeccCCcc-CCccccc------CCCC-CCCCCcceeeeecCCCCCCceEEeecCCCceeE
Q 006940 27 AMRISCGARQNIHSPPTNTLWFKDFAYT-GGIPANA------TRPS-FITPPLKTLRYFPLSEGPENCYIINRVPKGHYN 98 (624)
Q Consensus 27 ~~~I~CG~~~~~~~~~~~~~w~~D~~~~-~g~~~~~------~~~~-~~~~~y~t~R~F~~~~~~~~~Y~~~~~~~g~y~ 98 (624)
.++||||++.. +|..||+|.+|..|. .|..... .... .++.+|+|+|+|+. ..+|.||+.++|+|+
T Consensus 7 ~~~INcGg~~~--~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~~G~Y~ 80 (174)
T 2jwp_A 7 IWAVNAGGESH--VDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED----SFGYDIPIKEEGEYV 80 (174)
T ss_dssp EEEEEETSSSE--EETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS----CEEEEEECCSCEEEE
T ss_pred EEEEECCCCCc--cCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC----CeEEEEEeCCCeEEE
Confidence 58899998764 356799999998764 2321110 1000 12358999999985 589999998889999
Q ss_pred EEEEEecccCCCCCCCCcEEEEEcCeEEEEeecCCCCc-----ccceeEEEEEEe-------------eCCeEEEEEeeC
Q 006940 99 VRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDH-----DDRAFAEALVFL-------------RDGTVSICFHST 160 (624)
Q Consensus 99 vRl~F~~~~y~~~~~~~~Fdv~~~~~~~~~v~~~~~~~-----~~~~~~E~~~~~-------------~~~~l~i~f~~~ 160 (624)
|||||++..+.. ...+.|||+++| .+++.+|+.. ..++.||+.+.+ .+++|.|+|.|.
T Consensus 81 VrLhF~ei~~~~-~~~rvFdV~ing---~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~ 156 (174)
T 2jwp_A 81 LVLKFAEVYFAQ-SQQKVFDVRVNG---HTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKG 156 (174)
T ss_dssp EEEEEECCSCCC-SSSSCEEEEETT---EEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECS
T ss_pred EEEEEeccccCC-CCCeEeEEEECC---EEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEecc
Confidence 999999987764 467899999999 6677666642 246788888764 567899999986
Q ss_pred CCCCCcEeeEEEEEcC
Q 006940 161 GHGDPAILSLEILQVD 176 (624)
Q Consensus 161 ~~~~pfIsaIEl~~l~ 176 (624)
....||||||||++.+
T Consensus 157 ~~~~a~inaIEI~~~~ 172 (174)
T 2jwp_A 157 YYDNPKVCALFIMKGT 172 (174)
T ss_dssp SSCSSSEEEEEEESSC
T ss_pred CCCCcEEEEEEEEeCc
Confidence 5678999999999653
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=6.2e-18 Score=175.10 Aligned_cols=155 Identities=26% Similarity=0.493 Sum_probs=131.7
Q ss_pred cCChHHHHHHHHhhhccCCCC-CCCCCC--CCCCCCCCCCCCcccccCCCCceeEEEEEEcCCCCCcc--CCCccccccc
Q 006940 370 KTLPEEVRALQVLKNSLDLPH-RFGWNG--DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRG--FLPNGISKLR 444 (624)
Q Consensus 370 ~~~~~~~~aL~~~k~~~~~~~-~~~W~~--~~c~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g--~~p~~~~~L~ 444 (624)
.+.++|..||++||.++.++. ..+|.. ++|. +.|.||.|+... ...+|+.|+|++|++.| .+|..|.+|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~---~~w~gv~C~~~~--~~~~l~~L~L~~~~l~~~~~~~~~l~~l~ 76 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANLP 76 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc---CCCcceEeCCCC--CCceEEEEECCCCCccCCcccChhHhCCC
Confidence 367789999999999997664 247853 5563 359999997432 12369999999999999 8999999999
Q ss_pred ccccccCcC-ccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEe
Q 006940 445 HLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFN 523 (624)
Q Consensus 445 ~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~ 523 (624)
+|+.|+|++ |++.+.+|..|+++++|++|+|++|.+++.+|..+.++++|++|+|++|.+++.+|..+.. +.+|+.|+
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~ 155 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGIT 155 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEE
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc-CCCCCeEE
Confidence 999999995 9999999999999999999999999999999999999999999999999999999988876 78899999
Q ss_pred ccCCCCC
Q 006940 524 FTDNAGL 530 (624)
Q Consensus 524 l~~N~~l 530 (624)
+++|...
T Consensus 156 L~~N~l~ 162 (313)
T 1ogq_A 156 FDGNRIS 162 (313)
T ss_dssp CCSSCCE
T ss_pred CcCCccc
Confidence 9988743
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=8.9e-17 Score=187.28 Aligned_cols=148 Identities=21% Similarity=0.328 Sum_probs=125.3
Q ss_pred ChHHHHHHHHhhhccCCCCCCCCCCCC----CCCCCCCC------------CCcccccCCCCceeEEEEEEcCCCCCccC
Q 006940 372 LPEEVRALQVLKNSLDLPHRFGWNGDP----CVPQQHPW------------SGADCQFDRTSHKWVIDGLGLDNQGLRGF 435 (624)
Q Consensus 372 ~~~~~~aL~~~k~~~~~~~~~~W~~~~----c~~~~~~w------------~gv~C~~~~~~~~~~l~~L~L~~n~l~g~ 435 (624)
..+|..||++||.++.++ +|+... +.|..|.| .||+|+.. ++|+.|+|++|+|.|.
T Consensus 267 ~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGK---NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLAGFGAKGR 338 (876)
T ss_dssp HHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-----SCEEEEECTTTCCEEE
T ss_pred chHHHHHHHHHHHHcCCC---CCCcCCCcccccCCccccccccccccccCcCceEecCC-----CCEEEEECccCCCCCc
Confidence 346899999999999876 675322 22223579 99999742 3699999999999999
Q ss_pred CCcccccccccccccC-cCcccccc-------------------------------------------------------
Q 006940 436 LPNGISKLRHLQSINL-SGNSIRGA------------------------------------------------------- 459 (624)
Q Consensus 436 ~p~~~~~L~~L~~L~L-s~N~l~g~------------------------------------------------------- 459 (624)
+|+.|++|++|+.|+| ++|.++|.
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 9999999999999999 88776655
Q ss_pred ---------------------CCCCcCCCccCCeEeccCCCCCC-----------------CCccccC--CCCCCCEEec
Q 006940 460 ---------------------IPSSLGTIASLEVLDLSYNFFNG-----------------SIPESLG--QLTALRRLNL 499 (624)
Q Consensus 460 ---------------------ip~~l~~l~~L~~LdLs~N~l~g-----------------~iP~~l~--~l~~L~~L~L 499 (624)
||..|++|++|+.|+|++|+|+| .+|+.++ ++++|+.|+|
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 78889999999999999999998 4999988 9999999999
Q ss_pred cCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 500 NGNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
++|++.|.+|..+.. +.+|+.|++++|.
T Consensus 499 s~N~l~~~iP~~l~~-L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYD-LPELQSLNIACNR 526 (876)
T ss_dssp ESCTTCCSCCGGGGG-CSSCCEEECTTCT
T ss_pred cCCCCCccChHHHhC-CCCCCEEECcCCC
Confidence 999999999988876 7888999998887
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.64 E-value=2.3e-16 Score=179.25 Aligned_cols=145 Identities=20% Similarity=0.303 Sum_probs=115.2
Q ss_pred hHHHHHHHHhhhccCCCCCC----------CCCCC-CCCCCCCCC---CCcccccCCCCceeEEEEEEcCCCCCccCCCc
Q 006940 373 PEEVRALQVLKNSLDLPHRF----------GWNGD-PCVPQQHPW---SGADCQFDRTSHKWVIDGLGLDNQGLRGFLPN 438 (624)
Q Consensus 373 ~~~~~aL~~~k~~~~~~~~~----------~W~~~-~c~~~~~~w---~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p~ 438 (624)
..|..||.+++.+++.+.|. +|+.+ +| |.| .||+|+.. ++|+.|+|++++++|.+|+
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~----c~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g~lp~ 99 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVSLNSN-----GRVTGLSLEGFGASGRVPD 99 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG----GGTTCCTTEEECTT-----CCEEEEECTTSCCEEEECG
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc----ccccCCCCeEEcCC-----CCEEEEEecCcccCCcCCh
Confidence 35889999999887655432 67532 22 369 99999743 3699999999999999999
Q ss_pred ccccccccccccCcCc----------------------------------------------------------------
Q 006940 439 GISKLRHLQSINLSGN---------------------------------------------------------------- 454 (624)
Q Consensus 439 ~~~~L~~L~~L~Ls~N---------------------------------------------------------------- 454 (624)
+|++|++|+.|+|++|
T Consensus 100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 179 (636)
T 4eco_A 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179 (636)
T ss_dssp GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence 9999999999999888
Q ss_pred --------------cccccCCCCcCCCccCCeEeccCCCCCCC-----------------CccccC--CCCCCCEEeccC
Q 006940 455 --------------SIRGAIPSSLGTIASLEVLDLSYNFFNGS-----------------IPESLG--QLTALRRLNLNG 501 (624)
Q Consensus 455 --------------~l~g~ip~~l~~l~~L~~LdLs~N~l~g~-----------------iP~~l~--~l~~L~~L~Ls~ 501 (624)
+++| ||..+++|++|++|+|++|.|+|. +|+.++ ++++|++|+|++
T Consensus 180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~ 258 (636)
T 4eco_A 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258 (636)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence 4445 777888888888888888888875 888888 888888888888
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|++.|.+|..+.. +.+|+.|++++|.
T Consensus 259 n~l~~~~p~~l~~-l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 259 CPNLTKLPTFLKA-LPEMQLINVACNR 284 (636)
T ss_dssp CTTCSSCCTTTTT-CSSCCEEECTTCT
T ss_pred CcCCccChHHHhc-CCCCCEEECcCCC
Confidence 8888888877765 6677777777776
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=5.7e-15 Score=141.57 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=112.2
Q ss_pred CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCc-ccccccccccccCcCccccccCCCCcCCCccCCeEeccC
Q 006940 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPN-GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY 477 (624)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~-~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~ 477 (624)
|.|..+.|...... ....++.|+|++|.|++..+. .|..+++|+.|+|++|++++..|..|..+++|+.|+|++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 46788888643221 112588999999999987775 489999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 478 N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
|+|++..|..+.++++|+.|+|++|++++.+|..+.. +.+|+.|++++|++.|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH-LNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc-CCCCCEEEeCCCCccCcC
Confidence 9999988888999999999999999999988887765 788999999999998864
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.51 E-value=5.5e-15 Score=171.52 Aligned_cols=118 Identities=35% Similarity=0.629 Sum_probs=107.5
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|+++|.+|..|++|++|+.|+|++|+++|.+|..+++|++|+.|||++|+++|.+|..++.+++|+.|+|+
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCCCCCCCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP 541 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~~~~~c~~ 541 (624)
+|+++|.||... .+..+....+.+|+.+||.|.. .|..
T Consensus 713 ~N~l~g~iP~~~--~~~~~~~~~~~gN~~Lcg~~l~-~C~~ 750 (768)
T 3rgz_A 713 NNNLSGPIPEMG--QFETFPPAKFLNNPGLCGYPLP-RCDP 750 (768)
T ss_dssp SSEEEEECCSSS--SGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred CCcccccCCCch--hhccCCHHHhcCCchhcCCCCc-CCCC
Confidence 999999999752 2344556678899999998754 8864
No 8
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=136.56 Aligned_cols=128 Identities=27% Similarity=0.333 Sum_probs=108.6
Q ss_pred CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC
Q 006940 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (624)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N 478 (624)
|.|..+.|...... ....++.|+|++|.|+ .+|..|.++++|+.|+|++|++++..+..|..|++|+.|+|++|
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45677777643211 1135889999999998 78899999999999999999999888889999999999999999
Q ss_pred CCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
++++..|..+..+++|+.|+|++|+++ .+|......+.+|+.|++++|++.|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeecCC
Confidence 999888889999999999999999999 556544444788999999999999864
No 9
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=4.2e-14 Score=133.36 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=108.7
Q ss_pred CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC
Q 006940 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (624)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N 478 (624)
|.|.++.|...... ....++.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 57889998753321 1135889999999999877778899999999999999999777777899999999999999
Q ss_pred CCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
.+++..+..+..+++|+.|+|++|+++ .+|......+.+|+.|++++|++.|.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccC
Confidence 999777777899999999999999999 556655444788999999999988754
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.49 E-value=1.7e-14 Score=167.44 Aligned_cols=148 Identities=25% Similarity=0.367 Sum_probs=118.4
Q ss_pred CChHHHHHHHHhhhccCCCC-CCCCC-C-CCCCCCCCCCCCcccccCCCCceeEEEEEEcCCCCCccC---CC-------
Q 006940 371 TLPEEVRALQVLKNSLDLPH-RFGWN-G-DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGF---LP------- 437 (624)
Q Consensus 371 ~~~~~~~aL~~~k~~~~~~~-~~~W~-~-~~c~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~---~p------- 437 (624)
...+|..||++||+++.++. ..+|+ + ++| .|.||+|+ . ++|+.|+|+++++.|. +|
T Consensus 9 ~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C-----~w~gv~C~-~-----~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKNLLPDWSSNKNPC-----TFDGVTCR-D-----DKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGG-----GSTTEEEE-T-----TEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred CCHHHHHHHHHHHhhCCCcccccCCCCCCCCc-----CCcceEEC-C-----CcEEEEECCCCCcCCccCccChhHhccC
Confidence 35678999999999988764 34895 3 344 69999997 1 3699999999999887 44
Q ss_pred ----------------cccccccccccccCcCccccccCCC--CcCCCccCCeEeccCCCCCCCCcccc-CCCCCCCEEe
Q 006940 438 ----------------NGISKLRHLQSINLSGNSIRGAIPS--SLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRLN 498 (624)
Q Consensus 438 ----------------~~~~~L~~L~~L~Ls~N~l~g~ip~--~l~~l~~L~~LdLs~N~l~g~iP~~l-~~l~~L~~L~ 498 (624)
..|+.|++|+.|+|++|.++|.+|. .+++|++|++|+|++|.+++.+|..+ .++++|++|+
T Consensus 78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 4677888888888888888888887 88888888888888888888888765 7888888889
Q ss_pred ccCCcCcccCCchh--hhccCCCCEEeccCCCC
Q 006940 499 LNGNTLSGRVPAAL--GGRLLHRASFNFTDNAG 529 (624)
Q Consensus 499 Ls~N~l~g~iP~~~--~~~l~~l~~l~l~~N~~ 529 (624)
|++|++++..|..+ ...+.+|+.|++++|..
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 190 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKI 190 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCCcc
Confidence 98888888777652 22367888898888863
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=7.8e-14 Score=136.63 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=56.5
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
|+.|+|++|.|++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|++
T Consensus 59 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence 44455555555544444555555555555555555544444455555555555555555554455555555555555555
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCG 532 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~ 532 (624)
|++++..|..+.. +.+|+.|++++|++.|.
T Consensus 139 N~l~~~~~~~~~~-l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 139 NQITTVAPGAFDT-LHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCBCTTTTTT-CTTCCEEECCSCCEECS
T ss_pred CcCCEECHHHhcC-CCCCCEEEecCcCCcCC
Confidence 5555444444433 44555555555555543
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=2e-13 Score=134.47 Aligned_cols=124 Identities=20% Similarity=0.261 Sum_probs=106.1
Q ss_pred CCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCC
Q 006940 405 PWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF 479 (624)
Q Consensus 405 ~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~ 479 (624)
.|.++.|+..... ....++.|+|++|.|++..|..|.++++|+.|+|++|+++...+..|..+++|+.|+|++|+
T Consensus 20 s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 5999999754221 12358899999999999999999999999999999999986666678999999999999999
Q ss_pred CCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 480 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
|++..+..+..+++|+.|+|++|+++ .+|..+.. +.+|+.|++++|...
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQNQLK 148 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCSSCCC
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCCCcCC
Confidence 99777777899999999999999999 88988865 788999999999743
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=2.1e-14 Score=149.54 Aligned_cols=156 Identities=21% Similarity=0.309 Sum_probs=102.8
Q ss_pred cCChHHHHHHHHhhhccC-CCCC--CCCC-CCCCCCCCCCCCCcccccCCC----CceeEEEEEEcCCCCCccCCCcccc
Q 006940 370 KTLPEEVRALQVLKNSLD-LPHR--FGWN-GDPCVPQQHPWSGADCQFDRT----SHKWVIDGLGLDNQGLRGFLPNGIS 441 (624)
Q Consensus 370 ~~~~~~~~aL~~~k~~~~-~~~~--~~W~-~~~c~~~~~~w~gv~C~~~~~----~~~~~l~~L~L~~n~l~g~~p~~~~ 441 (624)
....++..||++||..+. ++.. ..|. ...|.+..|.|.|+.|..... ....+++.|+|++|+++ .+|..+.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 345678999999998763 3322 2562 112233345799999952100 00123667788887777 6777777
Q ss_pred cccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhh-------
Q 006940 442 KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG------- 514 (624)
Q Consensus 442 ~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~------- 514 (624)
.|++|+.|+|++|.++ .+|..++.+++|+.|+|++|.++ .+|..++++++|+.|+|++|++.+.+|..+..
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 7777777777777777 77777777777777777777777 67777777777777777777777777765432
Q ss_pred -ccCCCCEEeccCCC
Q 006940 515 -RLLHRASFNFTDNA 528 (624)
Q Consensus 515 -~l~~l~~l~l~~N~ 528 (624)
.+.+|+.|++++|.
T Consensus 180 ~~l~~L~~L~L~~n~ 194 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTG 194 (328)
T ss_dssp EESTTCCEEEEEEEC
T ss_pred ccCCCCCEEECcCCC
Confidence 24455666665554
No 14
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=2e-13 Score=133.70 Aligned_cols=106 Identities=25% Similarity=0.282 Sum_probs=64.3
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|+|++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+|+...+..+..+++|+.|+|++
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence 55666666666665555666666666666666666665566666666666666666666633334455666666666666
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|++++..|..+.. +.+|+.|++++|.
T Consensus 114 N~l~~~~~~~~~~-l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 114 NKINCLRVDAFQD-LHNLNLLSLYDNK 139 (220)
T ss_dssp SCCCCCCTTTTTT-CTTCCEEECCSSC
T ss_pred CCCCEeCHHHcCC-CCCCCEEECCCCc
Confidence 6666544444433 4556666666665
No 15
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=5.3e-13 Score=129.15 Aligned_cols=126 Identities=20% Similarity=0.247 Sum_probs=95.7
Q ss_pred CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC
Q 006940 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (624)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N 478 (624)
|.|.++.|...+.. ....++.|+|++|++++..+..|.++++|+.|+|++|++++..+..+..+++|++|+|++|
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 57888888743221 1124788999999998776667888899999999999998666666788889999999999
Q ss_pred CCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
++++..+..+..+++|+.|+|++|++++..+..+. .+.+|+.|++++|...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD-KLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCS
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhc-cCCcCCEEECCCCccc
Confidence 88866666678888889999988888854443343 3677888888888643
No 16
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1e-12 Score=123.20 Aligned_cols=107 Identities=24% Similarity=0.305 Sum_probs=92.1
Q ss_pred EEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCC
Q 006940 423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502 (624)
Q Consensus 423 ~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N 502 (624)
+.|++++|+|+. +|..+. ++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..|..+..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 458899999885 676653 88999999999999888999999999999999999999777777899999999999999
Q ss_pred cCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 503 TLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 503 ~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
+|++..|..+.. +.+|+.|++++|++.|.+
T Consensus 89 ~l~~~~~~~~~~-l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDN-LKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTT-CTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcC-CCCCCEEEeCCCCCCCCc
Confidence 999544444544 789999999999998864
No 17
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=8e-13 Score=129.40 Aligned_cols=112 Identities=24% Similarity=0.312 Sum_probs=101.1
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.|+.|+|++|.|++..|..|.+|++|+.|+|++|+|+...+..|..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 48899999999999999999999999999999999996666668999999999999999999889999999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
+|++++..+..+.. +.+|+.|++++|++.|.+
T Consensus 137 ~N~l~~~~~~~~~~-l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 137 DNKLQTIAKGTFSP-LRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp SSCCSCCCTTTTTT-CTTCCEEECCSSCEECSG
T ss_pred CCcCCEECHHHHhC-CCCCCEEEeCCCCcCCCC
Confidence 99999665555554 788999999999998864
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.37 E-value=1.6e-13 Score=141.81 Aligned_cols=114 Identities=31% Similarity=0.428 Sum_probs=102.4
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|. +..+++|+.|+|++|+++|.+|..+..+++|+.|+|++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 77899999999999999999999999999999999987775 88899999999999999999999999999999999999
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCCCCCCCCCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 539 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~~~~~c 539 (624)
|+++|.+|.. . .+.+|+.+++.+|+++|+.|.. .|
T Consensus 278 N~l~~~ip~~-~-~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 278 NNLCGEIPQG-G-NLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp SEEEEECCCS-T-TGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CcccccCCCC-c-cccccChHHhcCCCCccCCCCC-CC
Confidence 9999999986 3 4778999999999999997543 46
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=1.4e-12 Score=128.42 Aligned_cols=111 Identities=21% Similarity=0.246 Sum_probs=98.2
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.|+.|+|++|.|....+..|..|++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|+
T Consensus 65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 3888999999998766677899999999999999999777777899999999999999999 899999999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
+|++++. |......+.+|+.|++++|++.|.+
T Consensus 144 ~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 144 QNQLKSI-PHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCC-CTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCcc-CHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999954 5443344788999999999998864
No 20
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=2e-12 Score=121.71 Aligned_cols=107 Identities=23% Similarity=0.290 Sum_probs=92.3
Q ss_pred EEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCC
Q 006940 423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502 (624)
Q Consensus 423 ~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N 502 (624)
+.+++++|+|. .+|..+. ++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+.++++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 35899999985 6777664 89999999999999988999999999999999999999766666799999999999999
Q ss_pred cCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 503 TLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 503 ~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
++++ +|......+.+|+.|++++|++.|.+
T Consensus 92 ~l~~-l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKS-IPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCC-CCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccce-eCHHHhccccCCCEEEeCCCCccccc
Confidence 9995 55553334789999999999998864
No 21
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=127.50 Aligned_cols=127 Identities=19% Similarity=0.185 Sum_probs=107.9
Q ss_pred CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCc-ccccccccccccCcCccccccCCCCcCCCccCCeEeccC
Q 006940 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPN-GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY 477 (624)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~-~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~ 477 (624)
|.|..+.|+..... ....++.|+|++|+|++..|. .|..+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46778888643221 112367899999999988664 589999999999999999988888999999999999999
Q ss_pred CCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940 478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLC 531 (624)
Q Consensus 478 N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc 531 (624)
|.+++..|..+..+++|+.|+|++|++++..|..+.. +.+|+.|++++|....
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG-LSSVRLLSLYDNQITT 143 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTT-CTTCSEEECTTSCCCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCC-CccCCEEECCCCcCCE
Confidence 9999888888999999999999999999887877765 7889999999997443
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.35 E-value=2.9e-12 Score=129.43 Aligned_cols=112 Identities=25% Similarity=0.311 Sum_probs=93.8
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..++.+++|+.|+|++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 77899999999887777788899999999999999877777788899999999999999977777788899999999999
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~ 534 (624)
|++++..|..+.. +.+|+.|++++|++.|.++
T Consensus 191 N~l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 191 NQLKSVPDGVFDR-LTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp SCCSCCCTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred CcCCccCHHHHhC-CcCCCEEEccCCCccccCc
Confidence 9998765554544 7888999999998887653
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.33 E-value=4e-12 Score=126.79 Aligned_cols=110 Identities=23% Similarity=0.312 Sum_probs=89.3
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
|+.|+|++|.|++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++
T Consensus 85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence 77888888888877777788888888888888888866666678888888999998888866666788888889999998
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCG 532 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~ 532 (624)
|++++..|..+.. +.+|+.|++++|++.|.
T Consensus 165 N~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 165 NQLQSVPHGAFDR-LGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCSCCCTTTTTT-CTTCCEEECCSCCBCTT
T ss_pred CcCCccCHHHHhC-CCCCCEEEeeCCceeCC
Confidence 8888555544543 67888888888888775
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.33 E-value=1.5e-12 Score=146.74 Aligned_cols=113 Identities=24% Similarity=0.306 Sum_probs=103.3
Q ss_pred EEEEEEcCCCCCc-cCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 499 (624)
.++.|+|++|++. +..|..|..|++|+.|+|++|++++..|..|.+|++|+.|+|++|+|++..|..+.++++|+.|+|
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 3778999999854 457788999999999999999999999999999999999999999999888899999999999999
Q ss_pred cCCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
++|++++..|..+.....+|+.|++++|++.|.|
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9999999988888765578999999999999975
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.30 E-value=6.3e-12 Score=128.42 Aligned_cols=110 Identities=25% Similarity=0.271 Sum_probs=95.4
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.|++..|..|.+|++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|++
T Consensus 102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 77899999999987778899999999999999999977777788999999999999999955555678899999999999
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
|+++ .+|..+.. ...|+.+++++|++.|.|
T Consensus 182 N~l~-~ip~~~~~-~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 182 NSLY-TIPKGFFG-SHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp SCCC-CCCTTTTT-TCCCSEEECCSCCBCCSG
T ss_pred CcCC-ccChhhcc-cccCCeEEeCCCCccCcC
Confidence 9998 78888776 567899999999998864
No 26
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=5.9e-12 Score=131.68 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=87.5
Q ss_pred EEcCCC-CCccCCCcccccccccccccCcC-ccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCC
Q 006940 425 LGLDNQ-GLRGFLPNGISKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502 (624)
Q Consensus 425 L~L~~n-~l~g~~p~~~~~L~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N 502 (624)
++++++ +|+. +|. |..+++|+.|+|++ |+|++..|..|..|++|+.|+|++|+|++..|..|.+|++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344555 6664 777 99999999999996 9999888888999999999999999999988888999999999999999
Q ss_pred cCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 503 TLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 503 ~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
+|+ .+|......+. |+.|++.+|++.|.|
T Consensus 91 ~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 91 ALE-SLSWKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp CCS-CCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred ccc-eeCHHHcccCC-ceEEEeeCCCccCCC
Confidence 999 45655544344 899999999988865
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.27 E-value=1.3e-11 Score=124.43 Aligned_cols=112 Identities=23% Similarity=0.310 Sum_probs=98.2
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+++..+..+..+++|+.|+|+
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 37889999999999888889999999999999999997766778999999999999999997777778999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
+|++++ +|......+.+|+.|++++|++.|.+
T Consensus 190 ~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 190 NNQLKR-VPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SSCCSC-CCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCcCCc-CCHHHhccccCCCEEEecCCCeeCCC
Confidence 999995 55543344788999999999999875
No 28
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=4.8e-12 Score=115.51 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=90.3
Q ss_pred EEEEEEcCCCCCc-cCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 499 (624)
.++.|++++|.++ +.+|..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3778999999998 88898889999999999999999866 78889999999999999999888888888999999999
Q ss_pred cCCcCccc-CCchhhhccCCCCEEeccCCC
Q 006940 500 NGNTLSGR-VPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 500 s~N~l~g~-iP~~~~~~l~~l~~l~l~~N~ 528 (624)
++|++++. .|..+.. +++|+.|++++|+
T Consensus 96 s~N~i~~~~~~~~~~~-l~~L~~L~l~~N~ 124 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKK-LENLKSLDLFNCE 124 (149)
T ss_dssp TTSCCCSHHHHGGGGG-CTTCCEEECTTCG
T ss_pred CCCcCCChHHHHHHhh-CCCCCEEeCcCCc
Confidence 99999863 3355554 7889999999986
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.25 E-value=8.3e-12 Score=135.28 Aligned_cols=113 Identities=29% Similarity=0.360 Sum_probs=89.4
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+.+..|..|.++++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence 37778888888888778788888888888888888887777788888888888888888887778888888888888888
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~ 534 (624)
+|++++ +|......+.+|+.|++++|++.|.++
T Consensus 380 ~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 380 TNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcccc-CCHhHhccCCcccEEEccCCCcccCCC
Confidence 888885 454443346778888888888877654
No 30
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.25 E-value=9.8e-12 Score=129.28 Aligned_cols=110 Identities=23% Similarity=0.374 Sum_probs=86.7
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.|+ .+|..+.++++|+.|+|++|++++ +|..+..+++|+.|+|++|++.+.+|..++.+++|+.|+|++
T Consensus 185 L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp CCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred CCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 677888888887 777778888888888888888884 566788888888888888888888888888888888888888
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~ 534 (624)
|++.+.+|..+.. +.+|+.|++++|+.+...|
T Consensus 263 n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 263 CSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CTTCCBCCTTGGG-CTTCCEEECTTCTTCCCCC
T ss_pred CCchhhcchhhhc-CCCCCEEeCCCCCchhhcc
Confidence 8888888877765 6778888888877655443
No 31
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=1e-11 Score=118.66 Aligned_cols=90 Identities=26% Similarity=0.352 Sum_probs=85.6
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.|++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 38889999999999999999999999999999999999989889999999999999999999999999999999999999
Q ss_pred CCcCcccCCc
Q 006940 501 GNTLSGRVPA 510 (624)
Q Consensus 501 ~N~l~g~iP~ 510 (624)
+|++++..+-
T Consensus 135 ~N~l~c~c~l 144 (192)
T 1w8a_A 135 SNPFNCNCHL 144 (192)
T ss_dssp TCCBCCSGGG
T ss_pred CCCccCcCcc
Confidence 9999987764
No 32
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.24 E-value=2.2e-11 Score=121.47 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
|+.|+|++|.|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus 61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence 66777777777777776777777777777777777766666677777888888888877755555667778888888888
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
|++++..|..+.. +.+|+.|++++|..
T Consensus 141 N~l~~~~~~~~~~-l~~L~~L~L~~N~l 167 (251)
T 3m19_A 141 NQLQSIPAGAFDK-LTNLQTLSLSTNQL 167 (251)
T ss_dssp SCCCCCCTTTTTT-CTTCCEEECCSSCC
T ss_pred CcCCccCHHHcCc-CcCCCEEECCCCcC
Confidence 8877444434443 67788888888764
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.23 E-value=8.2e-12 Score=128.10 Aligned_cols=112 Identities=24% Similarity=0.308 Sum_probs=97.4
Q ss_pred EEEEEcCCCCCcc-CCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 422 IDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 422 l~~L~L~~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
++.|+|++|.+.+ .+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|.+++..+..+..+++|+.|+|+
T Consensus 152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 7789999999987 678888999999999999999998888889999999999999999997777788889999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
+|++++..|..+.....+|+.|++++|++.|.+
T Consensus 232 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp TSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 999998888877664458899999999987764
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.23 E-value=1.3e-11 Score=125.42 Aligned_cols=111 Identities=25% Similarity=0.293 Sum_probs=95.0
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++
T Consensus 131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 78899999999877777788999999999999999976666789999999999999999988899999999999999999
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
|++++..+..+. .+.+|+.|++++|++.|.+
T Consensus 211 n~l~~~~~~~~~-~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 211 NNLSALPTEALA-PLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp SCCSCCCHHHHT-TCTTCCEEECCSSCEECSG
T ss_pred CcCCcCCHHHcc-cCcccCEEeccCCCccCCC
Confidence 999964444454 4788999999999988864
No 35
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.22 E-value=3.9e-11 Score=115.89 Aligned_cols=112 Identities=24% Similarity=0.271 Sum_probs=98.2
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence 48899999999997777778999999999999999997777778999999999999999997777778999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
+|++++. |......+.+|+.|++++|++.|.+
T Consensus 133 ~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 133 QNQLKSV-PDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp SSCCSCC-CTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred CCcccee-CHHHhccCCCccEEEecCCCeecCC
Confidence 9999954 4443334788999999999988865
No 36
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.21 E-value=5.1e-11 Score=120.07 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=79.8
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCC
Q 006940 393 GWNGDPCVPQQHPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTI 467 (624)
Q Consensus 393 ~W~~~~c~~~~~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l 467 (624)
.|.+..|... ..|..+.|...... ....++.|+|++|++++..+..|.++++|+.|+|++|+++...+..|..+
T Consensus 6 ~~~~~~C~c~-~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 6 KKDGGVCSCN-NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp GGGTCSBEEE-TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCCCCCEeC-CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence 5666655311 13555666532211 11236778888888877666677777778888887777775444455667
Q ss_pred ccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 468 ASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 468 ~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+.. +.+|+.|++++|.
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-LTKLTYLSLGYNE 144 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-CcCCCEEECCCCc
Confidence 77777777777776555555566666666666666666443333322 4445555555543
No 37
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=1.6e-11 Score=114.46 Aligned_cols=104 Identities=25% Similarity=0.271 Sum_probs=56.4
Q ss_pred EEEEEcCCCCCc-cCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 422 IDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 422 l~~L~L~~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
++.|+|++|+++ +.+|..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|+
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 445556665555 55555555555666666666655543 455555556666666666555555555555556666666
Q ss_pred CCcCcccC-CchhhhccCCCCEEeccCCC
Q 006940 501 GNTLSGRV-PAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 501 ~N~l~g~i-P~~~~~~l~~l~~l~l~~N~ 528 (624)
+|++++.. +..+.. +.+|+.|++++|+
T Consensus 104 ~N~l~~~~~~~~l~~-l~~L~~L~l~~N~ 131 (168)
T 2ell_A 104 GNKLKDISTLEPLKK-LECLKSLDLFNCE 131 (168)
T ss_dssp SSSCCSSGGGGGGSS-CSCCCEEECCSSG
T ss_pred CCccCcchhHHHHhc-CCCCCEEEeeCCc
Confidence 66555321 123322 4555555555554
No 38
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=2.1e-11 Score=114.19 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=90.3
Q ss_pred CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC
Q 006940 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (624)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N 478 (624)
|.|..+.|+..... ....++.|+|++|.|++..|..|.+|++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45777777643221 1135788999999999999999999999999999999999777777899999999999999
Q ss_pred CCCCCCccccCCCCCCCEEeccCCcCcccCC
Q 006940 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVP 509 (624)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP 509 (624)
+|++..|..+..+++|+.|+|++|+++...+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9997777789999999999999999986644
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.20 E-value=1.6e-11 Score=138.24 Aligned_cols=113 Identities=20% Similarity=0.193 Sum_probs=97.3
Q ss_pred EEEEEEcCCCCCcc-CCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 499 (624)
.++.|+|++|.+.+ .+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 37789999999888 47888889999999999999999888888999999999999999999888999999999999999
Q ss_pred cCCcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940 500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~ 534 (624)
++|+++ .+|..+.....+|+.+++++|++.|.++
T Consensus 529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999998 7787766533469999999999998753
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.20 E-value=1.7e-11 Score=136.17 Aligned_cols=110 Identities=22% Similarity=0.264 Sum_probs=97.5
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+++..|..|.++++|+.|+|++|++++..|..|..+++|++|+|++|.+++..|..++++++|++|+|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 58899999999999989999999999999999999998888999999999999999999998888889999999999999
Q ss_pred CCcCcc-cCCchhhhccCCCCEEeccCCCCCC
Q 006940 501 GNTLSG-RVPAALGGRLLHRASFNFTDNAGLC 531 (624)
Q Consensus 501 ~N~l~g-~iP~~~~~~l~~l~~l~l~~N~~lc 531 (624)
+|++++ .+|..+.. +.+|+.|++++|....
T Consensus 107 ~n~l~~~~~~~~~~~-l~~L~~L~L~~n~~~~ 137 (549)
T 2z81_A 107 GNPYQTLGVTSLFPN-LTNLQTLRIGNVETFS 137 (549)
T ss_dssp TCCCSSSCSSCSCTT-CTTCCEEEEEESSSCC
T ss_pred CCcccccchhhhhhc-cCCccEEECCCCcccc
Confidence 999986 45666654 6788899988886433
No 41
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.18 E-value=3.2e-11 Score=127.04 Aligned_cols=126 Identities=19% Similarity=0.137 Sum_probs=98.3
Q ss_pred CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccc-cccccccccCcCccccccCCCCcCCCccCCeEeccC
Q 006940 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY 477 (624)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~ 477 (624)
|.+..+.|...... ....++.|+|++|+|++..+..+. ++++|+.|+|++|+|++..+..|..+++|+.|+|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666777543211 112367899999999887777777 889999999999999877777888999999999999
Q ss_pred CCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 478 N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
|+|++..+..+..+++|+.|+|++|++++..|..+.. +.+|+.|++++|...
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-MAQLQKLYLSQNQIS 149 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC-cccCCEEECCCCcCC
Confidence 9998776777888899999999999998666666655 678888888888743
No 42
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=3.3e-11 Score=134.54 Aligned_cols=102 Identities=26% Similarity=0.341 Sum_probs=92.9
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.|++ +|. |+.|++|+.|+|++|+|+ .+|..++.|++|+.|+|++|+|++ +| .++.+++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 6679999999997 676 999999999999999999 889999999999999999999996 78 899999999999999
Q ss_pred CcCcccC-CchhhhccCCCCEEeccCCCC
Q 006940 502 NTLSGRV-PAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 502 N~l~g~i-P~~~~~~l~~l~~l~l~~N~~ 529 (624)
|++++.. |..+.. +.+|+.|++++|+.
T Consensus 518 N~l~~~~~p~~l~~-l~~L~~L~L~~N~l 545 (567)
T 1dce_A 518 NRLQQSAAIQPLVS-CPRLVLLNLQGNSL 545 (567)
T ss_dssp SCCCSSSTTGGGGG-CTTCCEEECTTSGG
T ss_pred CCCCCCCCcHHHhc-CCCCCEEEecCCcC
Confidence 9999776 888876 78999999999984
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.18 E-value=6.8e-11 Score=119.33 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=93.6
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+++..+..+.++++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 47889999999998877788999999999999999998777778999999999999999997777778899999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
+|++++..|..+.. +.+|+.|++++|...
T Consensus 166 ~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 166 YNQLQSLPEGVFDK-LTQLKDLRLYQNQLK 194 (272)
T ss_dssp SSCCCCCCTTTTTT-CTTCCEEECCSSCCS
T ss_pred CCCcCccCHHHhcC-CccCCEEECCCCcCC
Confidence 99999655544443 788999999999744
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.16 E-value=4.5e-11 Score=133.21 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=103.0
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCcccc-ccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 499 (624)
.++.|+|++|.+.+..|..+.++++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 4788999999999999999999999999999999998 689999999999999999999999988999999999999999
Q ss_pred cCCcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940 500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~ 534 (624)
++|++++..|..+.. +.+|+.|++++|++.|.++
T Consensus 502 ~~n~l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 502 ASNQLKSVPDGIFDR-LTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CSSCCSCCCTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred CCCcCCCCCHHHhhc-ccCCcEEEecCCcccCCCc
Confidence 999999776665554 7889999999999998764
No 45
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.16 E-value=5.4e-11 Score=125.32 Aligned_cols=106 Identities=22% Similarity=0.273 Sum_probs=62.8
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
|+.|+|++|+|++..+..|.+|++|+.|+|++|+|++..+..|..|++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 55566666666665555566666666666666666655555566666666666666666655556666666666666666
Q ss_pred CcCcccCCchhh---hccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALG---GRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~---~~l~~l~~l~l~~N~ 528 (624)
|+++ .+|..+. ..+.+|+.|++++|.
T Consensus 146 N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SCCC-SCCGGGTC----CTTCCEEECCSSC
T ss_pred CcCC-eeCHHHhcCcccCCcCCEEECCCCC
Confidence 6666 3444432 224555666666554
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.16 E-value=3.6e-11 Score=135.34 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=88.8
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|+|++..+..|.+|++|+.|+|++|+|++..|..|.+|++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 47889999999998878889999999999999999997777788999999999999999986666778888888888888
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
+|++++..+..+.. +.+|+.|++++|..
T Consensus 133 ~N~l~~l~~~~~~~-L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 133 ETNLASLENFPIGH-LKTLKELNVAHNLI 160 (635)
T ss_dssp TSCCCCSTTCCCTT-CTTCCEEECCSSCC
T ss_pred CCcCCCCChhhhhc-CcccCeeccccCcc
Confidence 88888544334443 67788888888764
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.16 E-value=4.7e-11 Score=129.17 Aligned_cols=110 Identities=25% Similarity=0.323 Sum_probs=98.8
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.|+.|+|++|+|+. +| .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 186 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 186 NLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp SCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred ccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 38889999999984 45 58899999999999999999989999999999999999999999889999999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
+|++++ +|......+.+|+.|++++|++.|.|
T Consensus 264 ~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 264 HNNLTL-LPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TSCCCC-CCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred CCCCCc-cChhHhccccCCCEEEcCCCCccCCC
Confidence 999995 45544444788999999999999976
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.15 E-value=9.8e-11 Score=119.50 Aligned_cols=108 Identities=25% Similarity=0.264 Sum_probs=96.8
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.|+ .+|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 3788999999998 688889999999999999999998778889999999999999999997777778999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
+|+++ .+|......+.+|+.|++++|+..
T Consensus 157 ~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 157 NNNLT-ELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp TSCCS-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCC-ccCHHHhcCcCCCCEEECCCCcCC
Confidence 99999 667666555889999999999854
No 49
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=5.3e-11 Score=136.87 Aligned_cols=102 Identities=27% Similarity=0.428 Sum_probs=50.0
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
|+.|+|++|.|. .+|..+.+|++|+.|+|++|.|+ .+|..|++|++|+.|+|++|.|+ .+|..+++|++|+.|+|++
T Consensus 226 L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 226 WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred CcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence 444555555544 44444445555555555555554 44444555555555555555554 4454455555555555555
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|.|+ .+|..+.. +.+|+.|+|++|+
T Consensus 303 N~l~-~lp~~~~~-l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 303 NMVT-TLPWEFGN-LCNLQFLGVEGNP 327 (727)
T ss_dssp SCCC-CCCSSTTS-CTTCCCEECTTSC
T ss_pred CCCC-ccChhhhc-CCCccEEeCCCCc
Confidence 5544 44444333 4444555555444
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.14 E-value=4.8e-11 Score=129.56 Aligned_cols=110 Identities=24% Similarity=0.293 Sum_probs=98.7
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.|+.|+|++|+|++. | .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 197 ~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 197 NLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp TCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 378899999999864 3 58899999999999999999999999999999999999999999989999999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
+|++++ +|......+.+|+.|++++|++.|.|
T Consensus 275 ~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 275 HNNLSS-LPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp SSCCSC-CCTTSSTTCTTCCEEECCSSCEECST
T ss_pred CCcCCc-cChHHhccccCCCEEEccCCCcCCCC
Confidence 999994 45444444788999999999999976
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.14 E-value=2.2e-11 Score=142.68 Aligned_cols=108 Identities=21% Similarity=0.273 Sum_probs=94.0
Q ss_pred EEEEEEcCCCCCc-----cCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCC
Q 006940 421 VIDGLGLDNQGLR-----GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495 (624)
Q Consensus 421 ~l~~L~L~~n~l~-----g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~ 495 (624)
.++.|+|++|.++ +..+..|.+|++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..|..+. ++|+
T Consensus 452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~ 529 (844)
T 3j0a_A 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLE 529 (844)
T ss_dssp TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCC
T ss_pred ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cccc
Confidence 3777899999987 44556788999999999999999999999999999999999999999976666655 8999
Q ss_pred EEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940 496 RLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534 (624)
Q Consensus 496 ~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~ 534 (624)
.|+|++|++++..|..+ .+|+.+++++|++.|.|+
T Consensus 530 ~L~Ls~N~l~~~~~~~~----~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 530 ILDISRNQLLAPNPDVF----VSLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEEEEECCCCCCSCCC----SSCCEEEEEEECCCCSSS
T ss_pred EEECCCCcCCCCChhHh----CCcCEEEecCCCcccccc
Confidence 99999999999888754 468999999999999663
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.11 E-value=1.4e-10 Score=117.54 Aligned_cols=109 Identities=23% Similarity=0.229 Sum_probs=96.2
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+.+..|..+.++++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 37889999999998888889999999999999999997777779999999999999999996666678999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
+|++++..|..+.. +.+|+.|++++|...
T Consensus 186 ~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 186 QNRVAHVHPHAFRD-LGRLMTLYLFANNLS 214 (285)
T ss_dssp SSCCCEECTTTTTT-CTTCCEEECCSSCCS
T ss_pred CCcccccCHhHccC-cccccEeeCCCCcCC
Confidence 99999888887765 788999999999743
No 53
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.11 E-value=1.8e-10 Score=116.26 Aligned_cols=108 Identities=20% Similarity=0.287 Sum_probs=79.2
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCC-CCccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g-~iP~~l~~l~~L~~L~L 499 (624)
.++.|+|++|.+++..+..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|.+++ .+|..+..+++|+.|+|
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 36778888888877777777788888888888888876666677788888888888888775 36777888888888888
Q ss_pred cCCcCcccCCchhhhccCCCC----EEeccCCCC
Q 006940 500 NGNTLSGRVPAALGGRLLHRA----SFNFTDNAG 529 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~----~l~l~~N~~ 529 (624)
++|++++..+..+.. +..++ .+++++|..
T Consensus 157 s~N~l~~~~~~~~~~-l~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 157 SSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp CSSCCCEECGGGGHH-HHTCTTCCEEEECCSSCC
T ss_pred CCCCCCcCCHHHhhh-hhhccccceeeecCCCcc
Confidence 888887655554443 34444 677777763
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.10 E-value=8.2e-11 Score=123.29 Aligned_cols=107 Identities=25% Similarity=0.342 Sum_probs=93.1
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|++++..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+.++++|++|+|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 58899999999998777789999999999999999998888899999999999999999996555558999999999999
Q ss_pred CCcCcccCCc-hhhhccCCCCEEeccCCC
Q 006940 501 GNTLSGRVPA-ALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 501 ~N~l~g~iP~-~~~~~l~~l~~l~l~~N~ 528 (624)
+|+++ .+|. .....+.+|+.|++++|.
T Consensus 133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 133 GNPYK-TLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp TCCCS-SSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCCCc-ccCchhhhccCCCCcEEECCCCc
Confidence 99998 5665 333347889999999885
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.10 E-value=1.2e-10 Score=126.15 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=102.0
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+++..|..+..+++|+.|+|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 37889999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
+|++++..|..+.. +.+|+.|++++|...
T Consensus 356 ~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 356 YNHIRALGDQSFLG-LPNLKELALDTNQLK 384 (455)
T ss_dssp SSCCCEECTTTTTT-CTTCCEEECCSSCCS
T ss_pred CCcccccChhhccc-cccccEEECCCCccc
Confidence 99999888887776 789999999999854
No 56
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.10 E-value=3.7e-11 Score=109.53 Aligned_cols=103 Identities=23% Similarity=0.259 Sum_probs=89.2
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCC-CccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~-iP~~l~~l~~L~~L~L 499 (624)
.++.|+|++|.+++. ..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|.+++. .|..+..+++|+.|+|
T Consensus 43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 388899999999987 7899999999999999999988898888899999999999999963 4588999999999999
Q ss_pred cCCcCcccCC---chhhhccCCCCEEeccC
Q 006940 500 NGNTLSGRVP---AALGGRLLHRASFNFTD 526 (624)
Q Consensus 500 s~N~l~g~iP---~~~~~~l~~l~~l~l~~ 526 (624)
++|++++..+ ..+. .+++|+.|++++
T Consensus 121 ~~N~l~~~~~~~~~~~~-~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFK-LLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHH-HCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHH-HCCCcccccCCC
Confidence 9999996544 2344 478899988763
No 57
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.09 E-value=1.4e-10 Score=126.51 Aligned_cols=123 Identities=17% Similarity=0.212 Sum_probs=92.3
Q ss_pred CCCCcccccCCC-----CceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCC
Q 006940 405 PWSGADCQFDRT-----SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF 479 (624)
Q Consensus 405 ~w~gv~C~~~~~-----~~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~ 479 (624)
.|..+.|..... .....++.|+|++|+|++..|..|.++++|+.|+|++|.+++..|..|.+|++|+.|+|++|+
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 356677763221 112247788888888888888888888888888888888888778888888888888888888
Q ss_pred CCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 480 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
+++..+..+.++++|+.|+|++|++++..|..+.. +.+|+.|++++|.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~l~~n~ 139 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD-LYNLKSLEVGDND 139 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEEECCTT
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccc-cccCCEEECCCCc
Confidence 88555556788888888888888888766665544 5667777777765
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.09 E-value=1.7e-10 Score=125.20 Aligned_cols=120 Identities=22% Similarity=0.272 Sum_probs=93.2
Q ss_pred CCCcccccCCC-----CceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCC
Q 006940 406 WSGADCQFDRT-----SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480 (624)
Q Consensus 406 w~gv~C~~~~~-----~~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l 480 (624)
|..+.|...+. .....++.|+|++|+|++..|..|.+|++|+.|+|++|++++..|..|.++++|+.|+|++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 55677764321 1123578899999999999899999999999999999999988889999999999999999999
Q ss_pred CCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccC
Q 006940 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTD 526 (624)
Q Consensus 481 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~ 526 (624)
++..+..+..+++|+.|+|++|+++. +|......+.+|+.|++++
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCC
T ss_pred CccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCC
Confidence 97767778999999999999999984 4443222244455555444
No 59
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=1.5e-10 Score=108.82 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=79.5
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.|++..|..|.+|++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 47899999999999999999999999999999999997666668999999999999999996666679999999999999
Q ss_pred CCcCccc
Q 006940 501 GNTLSGR 507 (624)
Q Consensus 501 ~N~l~g~ 507 (624)
+|++...
T Consensus 114 ~N~~~c~ 120 (174)
T 2r9u_A 114 NNPWDCE 120 (174)
T ss_dssp SSCBCTT
T ss_pred CCCcccc
Confidence 9999854
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.09 E-value=9.7e-11 Score=131.72 Aligned_cols=111 Identities=23% Similarity=0.272 Sum_probs=90.3
Q ss_pred EEEEEEcCCCCCccC---CCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEE
Q 006940 421 VIDGLGLDNQGLRGF---LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 497 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~---~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L 497 (624)
.++.|+|++|.+.+. .+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+.++++| .|
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 377788888888762 33567888888888888888888888888888888888888888888888888888888 88
Q ss_pred eccCCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 498 NLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 498 ~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
+|++|++++..|..+.. +.+|+.+++++|++.|.|
T Consensus 529 ~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 529 NLASNHISIILPSLLPI-LSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp ECCSSCCCCCCGGGHHH-HHTSSEEECTTCCEECSG
T ss_pred ECcCCcccccCHhhccc-CCCCCEEeCCCCCccccC
Confidence 88888888766666654 677888999999888864
No 61
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.09 E-value=1e-10 Score=112.10 Aligned_cols=103 Identities=23% Similarity=0.288 Sum_probs=54.1
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|++++|.+. .++.+..+++|+.|+|++|++++..|..+..|++|+.|+|++|.+++..|..++.+++|+.|+|++
T Consensus 68 L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 68 IKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp CSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred CCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence 445555555332 223455555555555555555555555555555555555555555555555555555555555555
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|++.+.+| .+.. +.+|+.|++++|.
T Consensus 146 n~~i~~~~-~l~~-l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 146 NGAITDIM-PLKT-LPELKSLNIQFDG 170 (197)
T ss_dssp CTBCCCCG-GGGG-CSSCCEEECTTBC
T ss_pred CCCccccH-hhcC-CCCCCEEECCCCC
Confidence 55222444 2322 4455555555554
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.08 E-value=2.3e-10 Score=117.17 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccc-cCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
++.|+|++|.+.+..+..+..+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++..|..+..+++|+.|+|+
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 7889999999999999999999999999999999997 689999999999999999999998889999999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCG 532 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~ 532 (624)
+|++++..+..+.. +.+|+.|++++|+....
T Consensus 208 ~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 208 HNNFFSLDTFPYKC-LNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp TSCCSBCCSGGGTT-CTTCCEEECTTSCCCBC
T ss_pred CCccCccChhhccC-cccCCEeECCCCCCccc
Confidence 99999665555544 78899999999985543
No 63
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.08 E-value=7.4e-11 Score=109.85 Aligned_cols=106 Identities=25% Similarity=0.268 Sum_probs=91.7
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCC-ccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~i-P~~l~~l~~L~~L~L 499 (624)
.++.|+|++|.|++. ..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|.+++.. +..+..+++|+.|+|
T Consensus 50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 488999999999986 78999999999999999999888888888999999999999999532 278999999999999
Q ss_pred cCCcCcccCC---chhhhccCCCCEEeccCCCC
Q 006940 500 NGNTLSGRVP---AALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 500 s~N~l~g~iP---~~~~~~l~~l~~l~l~~N~~ 529 (624)
++|++++..+ ..+. .+++|+.|++++|..
T Consensus 128 ~~N~l~~~~~~~~~~~~-~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFK-LLPQLTYLDGYDRED 159 (168)
T ss_dssp CSSGGGTSTTHHHHHHT-TCSSCCEETTEETTS
T ss_pred eCCcCcchHHHHHHHHH-hCccCcEecCCCCCh
Confidence 9999995533 2444 478999999999874
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.08 E-value=2.6e-10 Score=128.18 Aligned_cols=90 Identities=20% Similarity=0.346 Sum_probs=45.2
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCC-CCccccCCCCCCCEEecc
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNLN 500 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g-~iP~~l~~l~~L~~L~Ls 500 (624)
++.|+|++|.+++..|..|++|++|+.|+|++|.+++..|..++++++|++|+|++|.+++ .+|..++++++|++|+|+
T Consensus 82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp CCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred cCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 4445555555554445555555555555555555554444445555555555555555543 345555555555555555
Q ss_pred CCcCcccCCch
Q 006940 501 GNTLSGRVPAA 511 (624)
Q Consensus 501 ~N~l~g~iP~~ 511 (624)
+|++++..|..
T Consensus 162 ~n~l~~~~~~~ 172 (606)
T 3vq2_A 162 YNYIQTITVND 172 (606)
T ss_dssp SSCCCEECTTT
T ss_pred CCcceecChhh
Confidence 55555444433
No 65
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=127.37 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=99.3
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.|+...+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 37889999999996555688999999999999999998888889999999999999999999999999999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
+|++++ +|......+.+|+.|++++|++.|.+
T Consensus 305 ~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 305 GNQLTT-LEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp SSCCSC-CCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CCcCce-eCHhHcCCCcccCEEEccCCCccCcc
Confidence 999995 55544444788999999999998875
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.06 E-value=2.7e-10 Score=128.10 Aligned_cols=110 Identities=17% Similarity=0.060 Sum_probs=96.0
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.|++..|..|.++++|+.|+|++|++.+..|..|.++++|++|+|++|++++..|..++++++|++|+|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 47889999999999888899999999999999999998889999999999999999999998889999999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC 531 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc 531 (624)
+|++++..|..+.. +.+|+.|++++|....
T Consensus 114 ~n~i~~l~~~~~~~-l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 114 QTGISSIDFIPLHN-QKTLESLYLGSNHISS 143 (606)
T ss_dssp TSCCSCGGGSCCTT-CTTCCEEECCSSCCCC
T ss_pred ccCcccCCcchhcc-CCcccEEECCCCcccc
Confidence 99998654555544 7788999999887443
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.06 E-value=2.6e-10 Score=115.14 Aligned_cols=106 Identities=20% Similarity=0.323 Sum_probs=67.1
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.+++..+..|.++++|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..++.+++|+.|+|++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 133 (276)
T 2z62_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133 (276)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC
Confidence 55666666666655555666666666666666666655556666666666666666666655555566666666666666
Q ss_pred CcCcc-cCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSG-RVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g-~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|++++ .+|..+.. +.+|+.|++++|.
T Consensus 134 n~l~~~~l~~~~~~-l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 134 NLIQSFKLPEYFSN-LTNLEHLDLSSNK 160 (276)
T ss_dssp SCCCCCCCCGGGGG-CTTCCEEECCSSC
T ss_pred CccceecCchhhcc-CCCCCEEECCCCC
Confidence 66654 34655554 5666666666665
No 68
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.06 E-value=6.1e-11 Score=134.50 Aligned_cols=107 Identities=12% Similarity=0.230 Sum_probs=75.3
Q ss_pred EEEEEEcCCCCCccC-----------------CCcccc--cccccccccCcCccccccCCCCcCCCccCCeEeccCCC-C
Q 006940 421 VIDGLGLDNQGLRGF-----------------LPNGIS--KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-F 480 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~-----------------~p~~~~--~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~-l 480 (624)
.++.|+|++|.|+|. +|..++ +|++|+.|+|++|++.|.+|..|++|++|+.|+|++|+ +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 366777777777775 777777 77777777777777777777777777777777777776 7
Q ss_pred CC-CCccccCCC------CCCCEEeccCCcCcccCCc--hhhhccCCCCEEeccCCCC
Q 006940 481 NG-SIPESLGQL------TALRRLNLNGNTLSGRVPA--ALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 481 ~g-~iP~~l~~l------~~L~~L~Ls~N~l~g~iP~--~~~~~l~~l~~l~l~~N~~ 529 (624)
+| .+|..++.+ ++|+.|+|++|+++ .+|. .+.. +.+|+.|++++|..
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~-l~~L~~L~L~~N~l 342 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK-MKKLGMLECLYNQL 342 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT-CTTCCEEECCSCCC
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc-CCCCCEEeCcCCcC
Confidence 77 667666554 66666666666666 6666 5544 55666666666653
No 69
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.06 E-value=5e-10 Score=107.08 Aligned_cols=102 Identities=28% Similarity=0.402 Sum_probs=90.0
Q ss_pred EEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCc
Q 006940 424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT 503 (624)
Q Consensus 424 ~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 503 (624)
.+++++|+|+ .+|..+. .+|+.|+|++|+++ .+|..|..+++|+.|+|++|.+++..|..+.++++|+.|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 5899999988 5676553 68999999999998 788999999999999999999998888899999999999999999
Q ss_pred CcccCCchhhhccCCCCEEeccCCCCC
Q 006940 504 LSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 504 l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
+++..|..+.. +.+|+.|++++|...
T Consensus 90 l~~i~~~~f~~-l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 90 LRCIPPRTFDG-LKSLRLLSLHGNDIS 115 (193)
T ss_dssp CCBCCTTTTTT-CTTCCEEECCSSCCC
T ss_pred cCEeCHHHhCC-CCCCCEEECCCCCCC
Confidence 99766666655 789999999999854
No 70
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=2.3e-10 Score=119.51 Aligned_cols=103 Identities=24% Similarity=0.322 Sum_probs=86.8
Q ss_pred CCCCCcccccC-CC------CceeEEEEEEcCC-CCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEec
Q 006940 404 HPWSGADCQFD-RT------SHKWVIDGLGLDN-QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDL 475 (624)
Q Consensus 404 ~~w~gv~C~~~-~~------~~~~~l~~L~L~~-n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdL 475 (624)
|.|..+.|... .. .....|+.|+|++ |.|++..+..|.+|++|+.|+|++|+|++..|..|.+|++|+.|+|
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 46888888754 11 1123488999996 9999988899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccCCCCCCCEEeccCCcCccc
Q 006940 476 SYNFFNGSIPESLGQLTALRRLNLNGNTLSGR 507 (624)
Q Consensus 476 s~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ 507 (624)
++|+|++..|..+..++ |+.|+|.+|+|...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999966556666666 99999999999853
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.05 E-value=6.1e-11 Score=122.22 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=90.7
Q ss_pred EEEEEEcCCCCCccCCCcccccc-----cccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCC--Ccccc--CCC
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS--IPESL--GQL 491 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L-----~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~--iP~~l--~~l 491 (624)
.++.|+|++|.+++. |..+..+ ++|+.|+|++|++++..|..|+.+++|+.|+|++|++.|. +|..+ ..+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 488899999999988 8888877 8999999999999988888999999999999999998876 34455 888
Q ss_pred CCCCEEeccCCcCcc--cCCchhhhccCCCCEEeccCCCCCC
Q 006940 492 TALRRLNLNGNTLSG--RVPAALGGRLLHRASFNFTDNAGLC 531 (624)
Q Consensus 492 ~~L~~L~Ls~N~l~g--~iP~~~~~~l~~l~~l~l~~N~~lc 531 (624)
++|+.|+|++|++++ .++..+...+.+|+.|++++|....
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 999999999999983 4444444446789999999997443
No 72
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=3.4e-10 Score=126.31 Aligned_cols=101 Identities=27% Similarity=0.332 Sum_probs=89.5
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCC-ccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~i-P~~l~~l~~L~~L~L 499 (624)
.|+.|+|++|.|+ .+|..|+.|++|+.|+|++|+|++ +| .++.|++|+.|+|++|+|++.+ |..++.+++|+.|+|
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 4889999999999 889999999999999999999997 77 8999999999999999999887 999999999999999
Q ss_pred cCCcCcccCCch--hhhccCCCCEEec
Q 006940 500 NGNTLSGRVPAA--LGGRLLHRASFNF 524 (624)
Q Consensus 500 s~N~l~g~iP~~--~~~~l~~l~~l~l 524 (624)
++|++++..|.. +...+++|+.|++
T Consensus 541 ~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 541 QGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999765532 2334678888764
No 73
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.03 E-value=1.6e-10 Score=108.59 Aligned_cols=101 Identities=19% Similarity=0.165 Sum_probs=54.3
Q ss_pred EEEEEcCCCCCccCCCccccccc-ccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLR-HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~-~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
++.|+|++|+++. +| .+..+. +|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..|..+..+++|+.|+|+
T Consensus 21 L~~L~l~~n~l~~-i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 21 DRELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CEEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred ceEEEeeCCCCch-hH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 4556666666653 23 233333 566666666666543 455556666666666666653322333556666666666
Q ss_pred CCcCcccCCc--hhhhccCCCCEEeccCCC
Q 006940 501 GNTLSGRVPA--ALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 501 ~N~l~g~iP~--~~~~~l~~l~~l~l~~N~ 528 (624)
+|+++ .+|. .+.. +.+|+.|++++|+
T Consensus 97 ~N~i~-~~~~~~~l~~-l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 97 NNSLV-ELGDLDPLAS-LKSLTYLCILRNP 124 (176)
T ss_dssp SCCCC-CGGGGGGGGG-CTTCCEEECCSSG
T ss_pred CCcCC-cchhhHhhhc-CCCCCEEEecCCC
Confidence 66663 4444 3332 4556666666665
No 74
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.03 E-value=3.6e-10 Score=106.14 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=89.5
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCcc--ccCCCCCCCEEe
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE--SLGQLTALRRLN 498 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~--~l~~l~~L~~L~ 498 (624)
.++.|+|++|.|++. ..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|.++ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 488999999999986 68999999999999999999654444589999999999999996 6776 889999999999
Q ss_pred ccCCcCcccCCch---hhhccCCCCEEeccCCC
Q 006940 499 LNGNTLSGRVPAA---LGGRLLHRASFNFTDNA 528 (624)
Q Consensus 499 Ls~N~l~g~iP~~---~~~~l~~l~~l~l~~N~ 528 (624)
|++|+++ .+|.. ....+++|+.|++++|.
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999998 66775 23347889999998885
No 75
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=4.6e-11 Score=137.38 Aligned_cols=107 Identities=26% Similarity=0.407 Sum_probs=91.8
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.|+.|+|++|.|+ .+|..|++|++|+.|+|++|+|+ .+|..|+.|++|+.|+|++|.|+ .+|..++.|++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 4788999999999 89999999999999999999999 88999999999999999999998 899999999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
+|+|+|.+|..+......+..+++.+|...
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 999999999877542111223445555543
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.02 E-value=5.2e-10 Score=125.86 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=77.4
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.|+.|+|++|.|++..|..|++|++|+.|+|++|.+++..+..|+++++|+.|+|++|.+++..|..++.+++|+.|+|+
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 37778888888888777777888888888888888885555556788888888888888887777778888888888888
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
+|.+++. |. . .+.+|..|++++|.
T Consensus 180 ~N~l~~~-~~--~-~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 180 SNRLTHV-DL--S-LIPSLFHANVSYNL 203 (597)
T ss_dssp TSCCSBC-CG--G-GCTTCSEEECCSSC
T ss_pred CCCCCCc-Ch--h-hhhhhhhhhcccCc
Confidence 8888753 32 1 24556666666554
No 77
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.02 E-value=3.2e-10 Score=108.61 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=87.1
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+++..+..+..|++|+.|+|++|++++..|..+..+++|+.|+|++|.+.+.+| .+..+++|+.|+|+
T Consensus 89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence 47889999999998888889999999999999999998888888999999999999998444676 68889999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
+|++++ ++ .+.. +++|+.|++++|+
T Consensus 168 ~n~i~~-~~-~l~~-l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 168 FDGVHD-YR-GIED-FPKLNQLYAFSQT 192 (197)
T ss_dssp TBCCCC-CT-TGGG-CSSCCEEEECBC-
T ss_pred CCCCcC-hH-Hhcc-CCCCCEEEeeCcc
Confidence 999985 44 4444 6789999999887
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.01 E-value=2.4e-10 Score=126.10 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=58.7
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.+++..|..|.+|++|+.|+|++|++++..|..|.++++|++|||++|+++ .+|.. .+++|++|+|++
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~ 99 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSF 99 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCS
T ss_pred ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccC
Confidence 455666666666555555666666666666666666555555666666666666666655 45544 555666666666
Q ss_pred CcCcc-cCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSG-RVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g-~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|++++ .+|..+.. +.+|+.|++++|.
T Consensus 100 N~l~~~~~p~~~~~-l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 100 NAFDALPICKEFGN-MSQLKFLGLSTTH 126 (520)
T ss_dssp SCCSSCCCCGGGGG-CTTCCEEEEEESS
T ss_pred Cccccccchhhhcc-CCcceEEEecCcc
Confidence 66554 34555443 4455555555544
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.01 E-value=5.4e-10 Score=120.75 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=85.5
Q ss_pred CCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCC
Q 006940 406 WSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480 (624)
Q Consensus 406 w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l 480 (624)
|..+.|...... ....++.|+|++|+|++..+..|.+|++|+.|+|++|++++..+..|.++++|+.|+|++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 556777532211 112467788888888888888888888888888888888877777888888888888888888
Q ss_pred CCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCC
Q 006940 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 527 (624)
Q Consensus 481 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N 527 (624)
++..+..+..+++|+.|+|++|+++...+..+. .+.+|+.|++++|
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-RIPSLRRLDLGEL 170 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-TCTTCCEEECCCC
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhh-hCcccCEeCCCCC
Confidence 865556788888888888888888743332332 2445555555543
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.01 E-value=5.1e-10 Score=124.91 Aligned_cols=107 Identities=28% Similarity=0.372 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCccCCCcc-cccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 422 IDGLGLDNQGLRGFLPNG-ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~-~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
++.|+|++|.+++.+|.. +..+++|+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECC
T ss_pred CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECC
Confidence 556666666666645543 55666666666666666666555443 56777777777776 666666677777777777
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCG 532 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~ 532 (624)
+|+++ .+|......+.+|+.+++++|++.|.
T Consensus 482 ~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 482 SNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 77777 56655222356677777777776665
No 81
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.01 E-value=5.9e-10 Score=127.13 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=87.1
Q ss_pred EEEEEEcCCCCCccCC----C----cccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCC
Q 006940 421 VIDGLGLDNQGLRGFL----P----NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT 492 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~----p----~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~ 492 (624)
.++.|+|++|.+++.. | ..+.++++|+.|+|++|+++...+..|..+++|+.|+|++|++++..+..+.+++
T Consensus 505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 584 (680)
T 1ziw_A 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584 (680)
T ss_dssp TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence 3667777777776531 1 2367778888888888888743334688899999999999999866666678899
Q ss_pred CCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006940 493 ALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 534 (624)
Q Consensus 493 ~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~~ 534 (624)
+|+.|+|++|++++..|..+...+.+|+.+++++|++.|.|+
T Consensus 585 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999999999999976665554246789999999999999864
No 82
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.01 E-value=4.5e-10 Score=123.84 Aligned_cols=103 Identities=21% Similarity=0.295 Sum_probs=58.6
Q ss_pred EEEEEcCCCCCcc--CCCcccccccccccccCcCccccccCCCC-cCCCccCCeEeccCCCCCCCCccccCCCCCCCEEe
Q 006940 422 IDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498 (624)
Q Consensus 422 l~~L~L~~n~l~g--~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ 498 (624)
++.|+|++|.+++ .+|..+..+++|+.|+|++|++++.+|.. +..+++|+.|+|++|++++.+|..+. ++|+.|+
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~ 427 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLD 427 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEE
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEE
Confidence 5556666666665 44555666666666666666666544432 55555666666666666555554443 4555556
Q ss_pred ccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 499 LNGNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 499 Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|++|+++ .+|..+.. +.+|+.|++++|+
T Consensus 428 Ls~N~l~-~ip~~~~~-l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 428 LHSNKIK-SIPKQVVK-LEALQELNVASNQ 455 (520)
T ss_dssp CCSSCCC-CCCGGGGG-CTTCCEEECCSSC
T ss_pred CCCCccc-ccchhhhc-CCCCCEEECCCCc
Confidence 6655555 55555542 4555555555554
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.00 E-value=5.3e-10 Score=124.72 Aligned_cols=105 Identities=25% Similarity=0.238 Sum_probs=91.7
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+++..|..|.++++|+.|+|++|++++..|..|..+++|++|||++|+++ .+|.. .+++|++|+|+
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence 4788999999999888889999999999999999999888889999999999999999998 77776 88999999999
Q ss_pred CCcCcc-cCCchhhhccCCCCEEeccCCCC
Q 006940 501 GNTLSG-RVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 501 ~N~l~g-~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
+|++++ .+|..+.. +.+|+.|++++|..
T Consensus 130 ~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l 158 (562)
T 3a79_B 130 FNDFDVLPVCKEFGN-LTKLTFLGLSAAKF 158 (562)
T ss_dssp SSCCSBCCCCGGGGG-CTTCCEEEEECSBC
T ss_pred CCCccccCchHhhcc-cCcccEEecCCCcc
Confidence 999986 45677765 77888999888864
No 84
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=1.3e-10 Score=135.58 Aligned_cols=107 Identities=16% Similarity=0.254 Sum_probs=82.9
Q ss_pred EEEEEEcCCCCCcc-----------------CCCcccc--cccccccccCcCccccccCCCCcCCCccCCeEeccCCC-C
Q 006940 421 VIDGLGLDNQGLRG-----------------FLPNGIS--KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-F 480 (624)
Q Consensus 421 ~l~~L~L~~n~l~g-----------------~~p~~~~--~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~-l 480 (624)
.|+.|+|++|.|+| .+|..++ +|++|+.|+|++|++.|.+|..|++|++|+.|+|++|+ +
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 47778888888888 3788877 88888888888888888888888888888888888887 8
Q ss_pred CC-CCccccCCCC-------CCCEEeccCCcCcccCCc--hhhhccCCCCEEeccCCCC
Q 006940 481 NG-SIPESLGQLT-------ALRRLNLNGNTLSGRVPA--ALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 481 ~g-~iP~~l~~l~-------~L~~L~Ls~N~l~g~iP~--~~~~~l~~l~~l~l~~N~~ 529 (624)
+| .+|..++.++ +|+.|+|++|+++ .+|. .+.. +.+|+.|++++|..
T Consensus 529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~-L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK-MVKLGLLDCVHNKV 585 (876)
T ss_dssp CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT-CTTCCEEECTTSCC
T ss_pred ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc-CCCCCEEECCCCCc
Confidence 87 7776655544 7888888888887 7777 6654 66777777777764
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.00 E-value=2.6e-10 Score=125.15 Aligned_cols=107 Identities=21% Similarity=0.190 Sum_probs=91.1
Q ss_pred EEEEEEcCCCCCccCCCcccc-cccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 499 (624)
.|+.|+|++|.|++..|..+. .|++|+.|+|++|.+++. | .+..+++|+.|+|++|.+++. |..+..+++|+.|+|
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISL 221 (487)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEEC
T ss_pred CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEe
Confidence 488999999999998888886 799999999999999976 3 344699999999999999964 445889999999999
Q ss_pred cCCcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940 500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCG 532 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~ 532 (624)
++|.+++ +|..+.. +.+|+.|++++|+..|+
T Consensus 222 s~N~l~~-lp~~l~~-l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 222 RNNKLVL-IEKALRF-SQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TTSCCCE-ECTTCCC-CTTCCEEECTTCCBCHH
T ss_pred cCCcCcc-cchhhcc-CCCCCEEEcCCCCCcCc
Confidence 9999995 7877654 67899999999998874
No 86
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.99 E-value=9e-10 Score=116.91 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=83.8
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+.+..|..|.++++|+.|+|++|+++...+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|+
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 47889999999998888888999999999999999984444446889999999999999998778888999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
+|++++. +. . .+.+|+.+++++|.
T Consensus 174 ~n~l~~~-~~--~-~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 174 SNRLTHV-DL--S-LIPSLFHANVSYNL 197 (390)
T ss_dssp SSCCSBC-CG--G-GCTTCSEEECCSSC
T ss_pred CCcCCcc-cc--c-cccccceeeccccc
Confidence 9999854 32 2 24556666666664
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.99 E-value=7.6e-10 Score=126.23 Aligned_cols=106 Identities=20% Similarity=0.248 Sum_probs=50.4
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|++++..+..|.++++|+.|+|++|.+++..|..+++|++|+.|+|++|.+++..+..++++++|++|+|++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence 44555555555554444455555555555555555544444444555555555555555432223344455555555555
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|++++..|..+.. +.+|+.|++++|.
T Consensus 107 n~l~~~~~~~~~~-l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 107 NSIQKIKNNPFVK-QKNLITLDLSHNG 132 (680)
T ss_dssp SCCCCCCSCTTTT-CTTCCEEECCSSC
T ss_pred CccCccChhHccc-cCCCCEEECCCCc
Confidence 5444333333332 3444444444443
No 88
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.99 E-value=9.8e-10 Score=114.00 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=97.9
Q ss_pred CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC
Q 006940 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (624)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N 478 (624)
|.|..+.|...... ....++.|+|++|.+.+..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 46788888643211 1124788999999999888889999999999999999999888999999999999999999
Q ss_pred CCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCC
Q 006940 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
.++ .+|..+. ++|+.|+|++|++++ +|......+.+|+.|++++|..
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCC
T ss_pred cCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCcc
Confidence 998 7777655 789999999999984 4444333477888888888864
No 89
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.98 E-value=5.9e-10 Score=130.59 Aligned_cols=106 Identities=22% Similarity=0.281 Sum_probs=61.6
Q ss_pred EEEEEcCCCCCccCC-CcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccc--cCCCCCCCEEe
Q 006940 422 IDGLGLDNQGLRGFL-PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES--LGQLTALRRLN 498 (624)
Q Consensus 422 l~~L~L~~n~l~g~~-p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~--l~~l~~L~~L~ 498 (624)
|+.|+|++|.+.+.+ |..|.+|++|+.|+|++|++++..|..|.+|++|+.|+|++|.+++.+|.. +.++++|++|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 445555555444444 445566666666666666666555666666666666666666666555543 56666666666
Q ss_pred ccCCcCcccCCc-hhhhccCCCCEEeccCCC
Q 006940 499 LNGNTLSGRVPA-ALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 499 Ls~N~l~g~iP~-~~~~~l~~l~~l~l~~N~ 528 (624)
|++|.+++..|. .+. .+.+|+.|++++|.
T Consensus 130 Ls~N~l~~~~~~~~~~-~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFG-KLNSLKSIDFSSNQ 159 (844)
T ss_dssp EESCCCCCCCCCGGGG-TCSSCCEEEEESSC
T ss_pred CCCCcccccccchhHh-hCCCCCEEECCCCc
Confidence 666666554442 333 25566666666665
No 90
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.98 E-value=1.1e-09 Score=113.39 Aligned_cols=121 Identities=20% Similarity=0.253 Sum_probs=88.5
Q ss_pred CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC
Q 006940 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (624)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N 478 (624)
|.|..+.|...... ....++.|+|++|++++..+..|.++++|+.|+|++|++++..|..+..+++|+.|+|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 46777777632211 1124788999999999888888999999999999999999888999999999999999999
Q ss_pred CCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
.++ .+|..+. ++|+.|++++|++++..+..+.. +.+|+.|++++|.
T Consensus 111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~ 156 (330)
T 1xku_A 111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNP 156 (330)
T ss_dssp CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTT-CTTCCEEECCSSC
T ss_pred cCC-ccChhhc--ccccEEECCCCcccccCHhHhcC-CccccEEECCCCc
Confidence 988 6665543 56777777777766433333332 4556666665554
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.97 E-value=2e-10 Score=118.25 Aligned_cols=110 Identities=19% Similarity=0.141 Sum_probs=80.1
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccC--CCCc--CCCccCCeEeccCCCCCC--CCc-cccCCCCC
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI--PSSL--GTIASLEVLDLSYNFFNG--SIP-ESLGQLTA 493 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~i--p~~l--~~l~~L~~LdLs~N~l~g--~iP-~~l~~l~~ 493 (624)
.++.|+|++|.+.+..|..|+++++|+.|+|++|++.|.+ |..+ ..+++|+.|+|++|++++ .++ ..+..+++
T Consensus 150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 229 (312)
T 1wwl_A 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229 (312)
T ss_dssp TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC
T ss_pred CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC
Confidence 4777888888888877788888888888888888877652 3333 778888888888888873 222 33456788
Q ss_pred CCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 494 LRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 494 L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
|+.|+|++|++++.+|......+.+|+.|++++|...
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 8888888888887665433333577888888888743
No 92
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=7.5e-10 Score=103.95 Aligned_cols=89 Identities=19% Similarity=0.279 Sum_probs=80.5
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.|++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 37889999999998777778999999999999999998777778999999999999999996666667899999999999
Q ss_pred CCcCcccCC
Q 006940 501 GNTLSGRVP 509 (624)
Q Consensus 501 ~N~l~g~iP 509 (624)
+|++++..|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 999998766
No 93
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.96 E-value=6.9e-10 Score=115.17 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=93.1
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 3777999999999888889999999999999999999888888999999999999999998 889889999999999999
Q ss_pred CCcCcccCCchhhhc-----cCCCCEEeccCCCCCC
Q 006940 501 GNTLSGRVPAALGGR-----LLHRASFNFTDNAGLC 531 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~-----l~~l~~l~l~~N~~lc 531 (624)
+|++++..+..+... ...++.+++.+|+..+
T Consensus 273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CCCCCccChhHccccccccccccccceEeecCcccc
Confidence 999985544444322 3457889999998763
No 94
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.96 E-value=1.2e-09 Score=113.26 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.+++..|..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCC
Confidence 788999999999988999999999999999999999888888999999999999999999 8999999999999999999
Q ss_pred CcCcccCCchhhh-----ccCCCCEEeccCCCCCC
Q 006940 502 NTLSGRVPAALGG-----RLLHRASFNFTDNAGLC 531 (624)
Q Consensus 502 N~l~g~iP~~~~~-----~l~~l~~l~l~~N~~lc 531 (624)
|++++.-+..+.. ....+..+++.+|+..+
T Consensus 273 N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 9999544433322 13567889999999755
No 95
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.96 E-value=1.4e-09 Score=121.12 Aligned_cols=106 Identities=21% Similarity=0.305 Sum_probs=56.0
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCC-CCccccCCCCCCCEEecc
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNLN 500 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g-~iP~~l~~l~~L~~L~Ls 500 (624)
++.|+|++|.+++..|..|.++++|+.|+|++|++++..+..+++|++|++|+|++|.+++ .+|..++++++|+.|+++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred CCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 4555555555555555555555555555555555554333345555555555555555554 345555555555555555
Q ss_pred CCcCcccCCchhhhccCCC----CEEeccCCC
Q 006940 501 GNTLSGRVPAALGGRLLHR----ASFNFTDNA 528 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l----~~l~l~~N~ 528 (624)
+|++++..|..+.. +.+| ..+++++|.
T Consensus 158 ~n~l~~~~~~~~~~-l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 158 SNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TSCCCEECGGGGHH-HHTCTTCCCEEECTTCC
T ss_pred CCccceecHHHccc-hhccchhhhhcccCCCC
Confidence 55555444443333 3333 455555554
No 96
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.95 E-value=1e-09 Score=123.43 Aligned_cols=107 Identities=16% Similarity=0.165 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
|+.|+|++|.|.+..|..|..+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++..+..++++++|+.|+|++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 56677777777777777777888888888888888777777777788888888888887744444567778888888888
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
|.+++..|..+.. +.+|+.|++++|..
T Consensus 157 N~l~~~~~~~~~~-l~~L~~L~L~~N~l 183 (597)
T 3oja_B 157 NNLERIEDDTFQA-TTSLQNLQLSSNRL 183 (597)
T ss_dssp SCCCBCCTTTTTT-CTTCCEEECTTSCC
T ss_pred CcCCCCChhhhhc-CCcCcEEECcCCCC
Confidence 8887666665554 67778888877763
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.93 E-value=1.5e-09 Score=118.99 Aligned_cols=106 Identities=19% Similarity=0.170 Sum_probs=93.4
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcC-CCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 499 (624)
.++.|+|++|.|++..|..++.+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++. |. +..+++|+.|+|
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L 198 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDL 198 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEEC
Confidence 388999999999999999999999999999999999998888886 799999999999999966 33 446999999999
Q ss_pred cCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
++|.+++ +|+.+.. +.+|+.|++++|...
T Consensus 199 s~N~l~~-~~~~~~~-l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 199 SSNKLAF-MGPEFQS-AAGVTWISLRNNKLV 227 (487)
T ss_dssp CSSCCCE-ECGGGGG-GTTCSEEECTTSCCC
T ss_pred CCCCCCC-CCHhHcC-CCCccEEEecCCcCc
Confidence 9999996 4555654 788999999999743
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.92 E-value=5.9e-10 Score=109.99 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=89.9
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCcc-ccccCCCCcCCCccCCeEeccC-CCCCCCCccccCCCCCCCEEe
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTIASLEVLDLSY-NFFNGSIPESLGQLTALRRLN 498 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~g~ip~~l~~l~~L~~LdLs~-N~l~g~iP~~l~~l~~L~~L~ 498 (624)
.++.|+|++|++++..+..|.++++|+.|+|++|+ ++...+..|..+++|+.|+|++ |++++..+..+.++++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 47889999999998877789999999999999997 8866666889999999999998 999966667888999999999
Q ss_pred ccCCcCcccCCchhhhccCCCC---EEeccCCCCCC
Q 006940 499 LNGNTLSGRVPAALGGRLLHRA---SFNFTDNAGLC 531 (624)
Q Consensus 499 Ls~N~l~g~iP~~~~~~l~~l~---~l~l~~N~~lc 531 (624)
|++|++++ +|. +.. +.+|+ .|++++|+.+.
T Consensus 112 l~~n~l~~-lp~-~~~-l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTK-VYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp EEEECCCS-CCC-CTT-CCBCCSEEEEEEESCTTCC
T ss_pred CCCCCCcc-ccc-ccc-ccccccccEEECCCCcchh
Confidence 99999985 776 443 66677 88898884343
No 99
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.92 E-value=1e-09 Score=113.29 Aligned_cols=107 Identities=21% Similarity=0.209 Sum_probs=77.9
Q ss_pred EEEEEEcCCCCCccCCCcccc-cccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEec
Q 006940 421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 499 (624)
.++.|+|++|.+++..+..+. .+++|+.|+|++|.+++. | ....+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221 (317)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEEC
Confidence 377788888888877666663 678888888888888754 3 23347788888888888874 4445777888888888
Q ss_pred cCCcCcccCCchhhhccCCCCEEeccCCCCCCC
Q 006940 500 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCG 532 (624)
Q Consensus 500 s~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~ 532 (624)
++|+++ .+|..+.. +.+|+.|++++|+..|+
T Consensus 222 ~~N~l~-~l~~~~~~-l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 222 RNNKLV-LIEKALRF-SQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TTSCCC-EECTTCCC-CTTCCEEECTTCCCBHH
T ss_pred cCCccc-chhhHhhc-CCCCCEEEccCCCccCc
Confidence 888887 56766544 56788888888876653
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.92 E-value=7.7e-10 Score=113.76 Aligned_cols=110 Identities=16% Similarity=0.105 Sum_probs=89.3
Q ss_pred EEEEEEcCCCCCccCCC----cccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCC--Cc--cccCCCC
Q 006940 421 VIDGLGLDNQGLRGFLP----NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS--IP--ESLGQLT 492 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p----~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~--iP--~~l~~l~ 492 (624)
.++.|+|++|.+.+..+ ..+..+++|+.|+|++|++.+..|..+..+++|+.|+|++|++.+. ++ ..++.++
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 197 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP 197 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence 47889999999998766 3556799999999999999988889999999999999999998753 32 3347889
Q ss_pred CCCEEeccCCcCcccCCc---hhhhccCCCCEEeccCCCCCC
Q 006940 493 ALRRLNLNGNTLSGRVPA---ALGGRLLHRASFNFTDNAGLC 531 (624)
Q Consensus 493 ~L~~L~Ls~N~l~g~iP~---~~~~~l~~l~~l~l~~N~~lc 531 (624)
+|++|+|++|+++ .+|. .+...+.+|+.|++++|....
T Consensus 198 ~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 198 AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 9999999999997 3333 233346889999999998543
No 101
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.90 E-value=7.1e-10 Score=123.01 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=50.7
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCC-CCccccCCCCCCCEEecc
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNLN 500 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g-~iP~~l~~l~~L~~L~Ls 500 (624)
++.|+|++|.+++..|..|.+|++|+.|+|++|++++..|..|+.+++|++|+|++|.+++ .+|..++++++|+.|+|+
T Consensus 52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence 4445555555555444455555555555555555554444445555555555555555543 234444555555555555
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
+|++.+.+|......+.+|+.|++++|.
T Consensus 132 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 132 NVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp ESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCccccccCHhhhhcccccCeeeccCCc
Confidence 5543334432211123444444444443
No 102
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.86 E-value=1.8e-09 Score=106.48 Aligned_cols=104 Identities=14% Similarity=0.223 Sum_probs=51.7
Q ss_pred EEEEEcCCCC-CccCCCcccccccccccccCcC-ccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCC---E
Q 006940 422 IDGLGLDNQG-LRGFLPNGISKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR---R 496 (624)
Q Consensus 422 l~~L~L~~n~-l~g~~p~~~~~L~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~---~ 496 (624)
++.|+|++|. ++...+..|.++++|+.|+|++ |++++..+..|..+++|+.|+|++|.+++ +|. +..+++|+ .
T Consensus 57 L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~ 134 (239)
T 2xwt_C 57 ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFI 134 (239)
T ss_dssp CCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEE
T ss_pred CcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccE
Confidence 4455555554 4444444555555555555555 55554444455555555555555555553 444 44555554 5
Q ss_pred EeccCC-cCcccCCchhhhccCCCC-EEeccCCC
Q 006940 497 LNLNGN-TLSGRVPAALGGRLLHRA-SFNFTDNA 528 (624)
Q Consensus 497 L~Ls~N-~l~g~iP~~~~~~l~~l~-~l~l~~N~ 528 (624)
|+|++| ++++..+..+. .+.+|+ .|++++|.
T Consensus 135 L~l~~N~~l~~i~~~~~~-~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 135 LEITDNPYMTSIPVNAFQ-GLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEESCTTCCEECTTTTT-TTBSSEEEEECCSCC
T ss_pred EECCCCcchhhcCccccc-chhcceeEEEcCCCC
Confidence 555555 55422222222 244455 55555554
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.85 E-value=7e-10 Score=114.08 Aligned_cols=104 Identities=22% Similarity=0.219 Sum_probs=76.3
Q ss_pred EEEEEEcCCCCCccC--CC--cccccccccccccCcCccccccCCC----CcCCCccCCeEeccCCCCCCCCccccCCC-
Q 006940 421 VIDGLGLDNQGLRGF--LP--NGISKLRHLQSINLSGNSIRGAIPS----SLGTIASLEVLDLSYNFFNGSIPESLGQL- 491 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~--~p--~~~~~L~~L~~L~Ls~N~l~g~ip~----~l~~l~~L~~LdLs~N~l~g~iP~~l~~l- 491 (624)
.++.|+|++|.+.+. ++ ..+..+++|+.|+|++|+++ .++. .+..+++|++|||++|++++.+|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 377788888887653 22 23467788888888888886 2232 24667888888888888888778777766
Q ss_pred --CCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCC
Q 006940 492 --TALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 492 --~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
++|+.|+|++|+++ .+|..+. .+|+.|++++|+.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l 284 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRL 284 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcC
Confidence 58888888888888 7777653 5788888888873
No 104
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.85 E-value=2.8e-09 Score=113.08 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=79.2
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCcc-ccCCCCCCCEEecc
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRLNLN 500 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~-~l~~l~~L~~L~Ls 500 (624)
++.|+|++|.+.+..+..|..+++|+.|+|++|.+++..|..++.+++|+.|+|++|.++ .+|. .+.++++|++|+|+
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECC
Confidence 667778888887776777788888888888888888777777788888888888888887 4444 45778888888888
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
+|++++..|..+.. +.+|+.|++++|..
T Consensus 150 ~n~l~~~~~~~~~~-l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 150 NNNLERIEDDTFQA-TTSLQNLQLSSNRL 177 (390)
T ss_dssp SSCCCBCCTTTTSS-CTTCCEEECCSSCC
T ss_pred CCccCccChhhccC-CCCCCEEECCCCcC
Confidence 88887655555544 67788888887763
No 105
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.82 E-value=2.5e-09 Score=111.96 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=52.7
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCC--CcCCCccCCeEeccCCC-CCCCCccccCCCCCCCEEe
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS--SLGTIASLEVLDLSYNF-FNGSIPESLGQLTALRRLN 498 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~--~l~~l~~L~~LdLs~N~-l~g~iP~~l~~l~~L~~L~ 498 (624)
++.|+|++|.+++..+..+.++++|+.|+|++|++++ +|. .+..+++|+.|+|++|+ +++..|..+.++++|+.|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 4455555555554333335555555555555555552 332 45555555555555552 3333344455555555555
Q ss_pred ccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 499 LNGNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 499 Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|++|++++..|..+.. +.+|+.|++++|.
T Consensus 181 l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~ 209 (353)
T 2z80_A 181 IDASDLQSYEPKSLKS-IQNVSHLILHMKQ 209 (353)
T ss_dssp EEETTCCEECTTTTTT-CSEEEEEEEECSC
T ss_pred CCCCCcCccCHHHHhc-cccCCeecCCCCc
Confidence 5555555544444443 4445555555554
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.81 E-value=4.8e-09 Score=108.14 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=91.4
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcC-CCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
++.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+. .+++|+.|+|++|.+++. |. ...+++|+.|+|+
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls 199 (317)
T 3o53_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS 199 (317)
T ss_dssp CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECC
Confidence 78899999999998888999999999999999999988777774 799999999999999854 43 3458999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
+|++++ +|..+.. +.+|+.|++++|...
T Consensus 200 ~N~l~~-l~~~~~~-l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 200 SNKLAF-MGPEFQS-AAGVTWISLRNNKLV 227 (317)
T ss_dssp SSCCCE-ECGGGGG-GTTCSEEECTTSCCC
T ss_pred CCcCCc-chhhhcc-cCcccEEECcCCccc
Confidence 999995 5666655 789999999999754
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.81 E-value=2.5e-09 Score=119.14 Aligned_cols=90 Identities=24% Similarity=0.336 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.|+ .+| ..+++|+.|+|++|+|++ +|. +.. +|+.|+|++|.|++ +|. .+++|+.|+|++
T Consensus 82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADN 149 (571)
T ss_dssp CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCC
Confidence 556666666666 455 345677777777777775 665 544 77777777777775 665 567777888888
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|++++ +|. .+.+|+.|++++|.
T Consensus 150 N~l~~-lp~----~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 150 NQLTM-LPE----LPTSLEVLSVRNNQ 171 (571)
T ss_dssp SCCSC-CCC----CCTTCCEEECCSSC
T ss_pred CccCc-CCC----cCCCcCEEECCCCC
Confidence 87775 665 24556666666665
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.76 E-value=9.6e-09 Score=104.69 Aligned_cols=99 Identities=29% Similarity=0.487 Sum_probs=69.5
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.+++. +.+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence 66677777777763 4577777777777777777754 467777777777777777775444 77777777777777
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
|++++ +|. +.. +.+|+.|++++|+.
T Consensus 188 N~i~~-l~~-l~~-l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 188 NHISD-LRA-LAG-LKNLDVLELFSQEC 212 (291)
T ss_dssp SCCCB-CGG-GTT-CTTCSEEEEEEEEE
T ss_pred CcCCC-Chh-hcc-CCCCCEEECcCCcc
Confidence 77774 443 433 66777777777763
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.74 E-value=2.9e-08 Score=99.61 Aligned_cols=100 Identities=22% Similarity=0.303 Sum_probs=76.7
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.|++..+ +..|++|+.|+|++|++++ +|.. .. ++|+.|+|++|++++ +| .+..+++|+.|+|+
T Consensus 64 ~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 64 NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIR 136 (263)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECT
T ss_pred CCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECC
Confidence 37789999999887544 8889999999999999885 4433 23 888888888888885 44 57888888888888
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
+|++++ +| .+.. +.+|+.|++++|+..
T Consensus 137 ~N~i~~-~~-~l~~-l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 137 NNKLKS-IV-MLGF-LSKLEVLDLHGNEIT 163 (263)
T ss_dssp TSCCCB-CG-GGGG-CTTCCEEECTTSCCC
T ss_pred CCcCCC-Ch-HHcc-CCCCCEEECCCCcCc
Confidence 888885 44 3443 678888888888743
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.73 E-value=1.8e-08 Score=113.14 Aligned_cols=101 Identities=30% Similarity=0.485 Sum_probs=80.1
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.|+.|+|++|.|.+. +.+..|++|+.|+|++|.+++. ..+..|++|+.|+|++|.|++..| +..+++|+.|+|+
T Consensus 110 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 110 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183 (605)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence 477888888888863 4588888888888888888864 578888889999999998887666 8888889999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
+|++++ +| .+.. +.+|+.|++++|+..
T Consensus 184 ~N~i~~-l~-~l~~-l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 184 KNHISD-LR-ALAG-LKNLDVLELFSQECL 210 (605)
T ss_dssp SSCCCB-CG-GGTT-CTTCSEEECCSEEEE
T ss_pred CCCCCC-Ch-HHcc-CCCCCEEEccCCcCc
Confidence 998885 44 3444 678888998888743
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.73 E-value=1.9e-08 Score=102.51 Aligned_cols=98 Identities=30% Similarity=0.413 Sum_probs=56.3
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.+++ .+.+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++
T Consensus 92 L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 92 LGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 165 (291)
T ss_dssp CCEEECCSSCCCC--GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CCEEECCCCcCCC--ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccC
Confidence 5556666665554 12355566666666666666542 2455666666666666666643 3456666666666666
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|++++..| +.. +.+|+.|++++|.
T Consensus 166 N~l~~~~~--l~~-l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 166 NQISDIVP--LAG-LTKLQNLYLSKNH 189 (291)
T ss_dssp SCCCCCGG--GTT-CTTCCEEECCSSC
T ss_pred Cccccchh--hcC-CCccCEEECCCCc
Confidence 66664333 332 5566666666665
No 112
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.72 E-value=1.1e-08 Score=106.35 Aligned_cols=100 Identities=26% Similarity=0.373 Sum_probs=52.5
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.+++. +.+..+++|+.|+|++|.+++. +.+..+++|+.|+|++|.+++..|..+..+++|+.|+|++
T Consensus 245 L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 245 LTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred CCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 44555555555542 3455555555555555555532 2355555555555555555555555555555555555555
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|++++..| +.. +..|+.|++++|+
T Consensus 321 n~l~~~~~--~~~-l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 321 NHITDIRP--LAS-LSKMDSADFANQV 344 (347)
T ss_dssp SSCCCCGG--GGG-CTTCSEESSSCC-
T ss_pred CccccccC--hhh-hhccceeehhhhc
Confidence 55554433 222 4455555555554
No 113
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.71 E-value=2.2e-08 Score=102.81 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=57.4
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.+++..+ +..+++|+.|+|++|++++. +. +..+++|+.|+|++|.+++. |. +..+++|+.|+|++
T Consensus 131 L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 131 LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKN 204 (308)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTT
T ss_pred CCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccC
Confidence 5566666666655332 56666666666666666643 22 56666666666666666633 22 55666666666666
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
|++++..| +. .+.+|+.|++++|+.
T Consensus 205 N~l~~~~~--l~-~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 205 NQISDVSP--LA-NTSNLFIVTLTNQTI 229 (308)
T ss_dssp SCCCBCGG--GT-TCTTCCEEEEEEEEE
T ss_pred CccCcccc--cc-CCCCCCEEEccCCee
Confidence 66664322 32 255666666666653
No 114
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.71 E-value=1.1e-08 Score=105.20 Aligned_cols=101 Identities=22% Similarity=0.309 Sum_probs=83.8
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+++. + .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++ ++. +..+++|+.|+|+
T Consensus 108 ~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 108 SIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKAD 181 (308)
T ss_dssp TCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred CCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECC
Confidence 378899999999874 3 38999999999999999986544 8899999999999999985 444 8899999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
+|++++. |. +. .+.+|+.|++++|+..
T Consensus 182 ~n~l~~~-~~-l~-~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 182 DNKISDI-SP-LA-SLPNLIEVHLKNNQIS 208 (308)
T ss_dssp SSCCCCC-GG-GG-GCTTCCEEECTTSCCC
T ss_pred CCccCcC-hh-hc-CCCCCCEEEccCCccC
Confidence 9999854 43 43 3788999999999744
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.71 E-value=1.9e-08 Score=112.92 Aligned_cols=81 Identities=26% Similarity=0.400 Sum_probs=68.9
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.|+.|+|++|.|++. ..+..|++|+.|+|++|.|++..| +..|++|+.|+|++|.|++ +| .+..+++|+.|+|+
T Consensus 132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 205 (605)
T ss_dssp TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECC
T ss_pred ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEcc
Confidence 478899999999875 678889999999999999987666 8889999999999999985 44 58889999999999
Q ss_pred CCcCccc
Q 006940 501 GNTLSGR 507 (624)
Q Consensus 501 ~N~l~g~ 507 (624)
+|++++.
T Consensus 206 ~N~l~~~ 212 (605)
T 1m9s_A 206 SQECLNK 212 (605)
T ss_dssp SEEEECC
T ss_pred CCcCcCC
Confidence 9998753
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.70 E-value=2e-10 Score=110.06 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=66.4
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.+++ +| .+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+|++
T Consensus 50 L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 50 CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp CSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESE
T ss_pred CCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCC
Confidence 5667777777766 55 6677777777777777776 566666666777777777777764 44 466667777777777
Q ss_pred CcCcccCCc--hhhhccCCCCEEeccCCCC
Q 006940 502 NTLSGRVPA--ALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 502 N~l~g~iP~--~~~~~l~~l~~l~l~~N~~ 529 (624)
|++++ +|. .+.. +.+|+.|++++|+.
T Consensus 125 N~i~~-~~~~~~l~~-l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 125 NKITN-WGEIDKLAA-LDKLEDLLLAGNPL 152 (198)
T ss_dssp EECCC-HHHHHHHTT-TTTCSEEEECSCHH
T ss_pred CcCCc-hhHHHHHhc-CCCCCEEEecCCcc
Confidence 77763 222 3332 56677777777764
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.70 E-value=2.5e-08 Score=111.05 Aligned_cols=95 Identities=24% Similarity=0.342 Sum_probs=53.1
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCC-------
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL------- 494 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L------- 494 (624)
|+.|+|++|.|++ +|. .+++|+.|+|++|+|++ +|. |. ++|+.|+|++|+|+ .+|. +.. +|
T Consensus 142 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L 209 (571)
T 3cvr_A 142 LEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETE 209 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CC
T ss_pred ccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccc
Confidence 5556666666655 443 35566666666666664 554 44 56666666666666 5555 333 44
Q ss_pred CEEeccCCcCcccCCchhhhccCCCCEEeccCCCCC
Q 006940 495 RRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 495 ~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
+.|+|++|+++ .+|..+.. +.+|+.|++++|+..
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLS 243 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCC
T ss_pred eEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCC
Confidence 66666666665 45655554 555666666666543
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.66 E-value=3.7e-10 Score=108.23 Aligned_cols=102 Identities=22% Similarity=0.338 Sum_probs=84.3
Q ss_pred EEEEEcCCCCCccCCCc------ccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCC
Q 006940 422 IDGLGLDNQGLRGFLPN------GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~------~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~ 495 (624)
++.++++.+.+.|.+|. .+..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.++ .+|..+..+++|+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 34456666667776666 89999999999999999996 77 8899999999999999998 7888888889999
Q ss_pred EEeccCCcCcccCCchhhhccCCCCEEeccCCCC
Q 006940 496 RLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 496 ~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
.|+|++|++++ +| .+.. +.+|+.|++++|..
T Consensus 97 ~L~L~~N~l~~-l~-~~~~-l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 97 ELWISYNQIAS-LS-GIEK-LVNLRVLYMSNNKI 127 (198)
T ss_dssp EEEEEEEECCC-HH-HHHH-HHHSSEEEESEEEC
T ss_pred EEECcCCcCCc-CC-cccc-CCCCCEEECCCCcC
Confidence 99999999985 56 4544 67899999999874
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.65 E-value=6.3e-08 Score=97.10 Aligned_cols=98 Identities=24% Similarity=0.350 Sum_probs=83.3
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|++++|+++. +| .+..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++ +|.... ++|+.|+|++
T Consensus 43 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~ 115 (263)
T 1xeu_A 43 VQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDN 115 (263)
T ss_dssp CSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCS
T ss_pred CcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc--CcccEEEccC
Confidence 7789999999985 55 78999999999999999996544 9999999999999999995 554333 8999999999
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
|++++ +| .+.. +.+|+.|++++|..
T Consensus 116 N~l~~-~~-~l~~-l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 116 NELRD-TD-SLIH-LKNLEILSIRNNKL 140 (263)
T ss_dssp SCCSB-SG-GGTT-CTTCCEEECTTSCC
T ss_pred CccCC-Ch-hhcC-cccccEEECCCCcC
Confidence 99996 44 3544 78899999999973
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.65 E-value=3.7e-09 Score=112.04 Aligned_cols=110 Identities=16% Similarity=0.297 Sum_probs=92.2
Q ss_pred EEEEEEcCCCCCc--c---CCCcccccccccccccCcCcccc----ccCCCCcCCCccCCeEeccCCCCCCC----Cccc
Q 006940 421 VIDGLGLDNQGLR--G---FLPNGISKLRHLQSINLSGNSIR----GAIPSSLGTIASLEVLDLSYNFFNGS----IPES 487 (624)
Q Consensus 421 ~l~~L~L~~n~l~--g---~~p~~~~~L~~L~~L~Ls~N~l~----g~ip~~l~~l~~L~~LdLs~N~l~g~----iP~~ 487 (624)
.++.|+|++|.|. | .+|..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 3788999999998 3 34558889999999999999996 67888889999999999999999865 5666
Q ss_pred c--CCCCCCCEEeccCCcCcc----cCCchhhhccCCCCEEeccCCCCC
Q 006940 488 L--GQLTALRRLNLNGNTLSG----RVPAALGGRLLHRASFNFTDNAGL 530 (624)
Q Consensus 488 l--~~l~~L~~L~Ls~N~l~g----~iP~~~~~~l~~l~~l~l~~N~~l 530 (624)
+ +.+++|+.|+|++|.+++ .+|..+...+++|+.|++++|+..
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 6 448999999999999997 588887555788999999998743
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.65 E-value=5.6e-08 Score=105.55 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=81.0
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.|++. | ++.+++|+.|+|++|++++. | ++.+++|+.|+|++|++++ +| ++.+++|+.|+|+
T Consensus 65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence 478899999999884 3 88899999999999999874 3 8889999999999999986 55 8889999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC 531 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc 531 (624)
+|++++ +| +.. +.+|+.|++++|....
T Consensus 136 ~N~l~~-l~--l~~-l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 136 RNTLTE-ID--VSH-NTQLTELDCHLNKKIT 162 (457)
T ss_dssp TSCCSC-CC--CTT-CTTCCEEECTTCSCCC
T ss_pred CCccce-ec--ccc-CCcCCEEECCCCCccc
Confidence 999986 44 333 6789999999986443
No 122
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.65 E-value=4.6e-08 Score=101.73 Aligned_cols=104 Identities=22% Similarity=0.375 Sum_probs=89.7
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+++..+ +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++ + +.+..+++|+.|+|+
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLN 295 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECC
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECc
Confidence 37889999999987544 88999999999999999863 468899999999999999985 4 458899999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940 501 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC 531 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc 531 (624)
+|++++..|..+.. +.+|+.|++++|+..+
T Consensus 296 ~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 296 NNQLGNEDMEVIGG-LTNLTTLFLSQNHITD 325 (347)
T ss_dssp SSCCCGGGHHHHHT-CTTCSEEECCSSSCCC
T ss_pred CCcCCCcChhHhhc-cccCCEEEccCCcccc
Confidence 99999887777765 7899999999998544
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.62 E-value=3.3e-08 Score=107.46 Aligned_cols=101 Identities=27% Similarity=0.362 Sum_probs=80.8
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.+.+..+ +..+++|+.|+|++|++++..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++
T Consensus 289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGH 362 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCC
Confidence 7778888888887544 7788888888888888887665 77888888999988888864 4678888899999999
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAGLC 531 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc 531 (624)
|++++..| +.. +..|+.|++++|++.+
T Consensus 363 n~l~~~~~--~~~-l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 363 NQISDLTP--LAN-LTRITQLGLNDQAWTN 389 (466)
T ss_dssp SCCCBCGG--GTT-CTTCCEEECCCEEEEC
T ss_pred CccCccch--hhc-CCCCCEEeccCCcccC
Confidence 99987766 433 6788888888887544
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.60 E-value=2.2e-08 Score=104.66 Aligned_cols=106 Identities=17% Similarity=0.097 Sum_probs=84.6
Q ss_pred CCCCCcccccCCCC-----ceeEEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCC-CcCCCccCCe-Eecc
Q 006940 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEV-LDLS 476 (624)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~-LdLs 476 (624)
|.|..|.|+..+.. ....++.|+|++|+|+..-+..|.+|++|+.|+|++|++.+.+|. .|.+|++|+. +.++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56778888743211 123588999999999976666899999999999999999877764 5788888775 6677
Q ss_pred CCCCCCCCccccCCCCCCCEEeccCCcCcccCC
Q 006940 477 YNFFNGSIPESLGQLTALRRLNLNGNTLSGRVP 509 (624)
Q Consensus 477 ~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP 509 (624)
.|+++...|..+..+++|+.|++++|++++..+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCc
Confidence 899997778889999999999999999985433
No 125
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.59 E-value=8e-08 Score=104.46 Aligned_cols=99 Identities=23% Similarity=0.359 Sum_probs=56.9
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.+++..+ +..+++|+.|+|++|++.+..+ +..+++|+.|+|++|++++..| +..+++|+.|++++
T Consensus 267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence 5556666666655333 5566666666666666664333 5566666666666666665444 45666666666666
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
|++++. + .+.. +.+|+.|++++|+.
T Consensus 341 n~l~~~-~-~l~~-l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 341 NKVSDV-S-SLAN-LTNINWLSAGHNQI 365 (466)
T ss_dssp SCCCCC-G-GGTT-CTTCCEEECCSSCC
T ss_pred CccCCc-h-hhcc-CCCCCEEeCCCCcc
Confidence 666643 2 2332 45566666666653
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.57 E-value=1.1e-08 Score=105.83 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=55.7
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCcccccc-CCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
++.|++++|.+.+..+. +..+++|+.|+|++|.+++. +|..+..+++|+.|+|++|.+++..|..++.+++|+.|+|+
T Consensus 72 l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 44555555555554443 33455566666666555544 55555555556666666555555555555555555555555
Q ss_pred CC-cCccc-CCchhhhccCCCCEEeccCC
Q 006940 501 GN-TLSGR-VPAALGGRLLHRASFNFTDN 527 (624)
Q Consensus 501 ~N-~l~g~-iP~~~~~~l~~l~~l~l~~N 527 (624)
+| .+++. +|..+.. +++|+.|++++|
T Consensus 151 ~~~~l~~~~l~~~~~~-~~~L~~L~l~~~ 178 (336)
T 2ast_B 151 GCSGFSEFALQTLLSS-CSRLDELNLSWC 178 (336)
T ss_dssp TCBSCCHHHHHHHHHH-CTTCCEEECCCC
T ss_pred CCCCCCHHHHHHHHhc-CCCCCEEcCCCC
Confidence 55 45432 3333332 445555555555
No 127
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.57 E-value=4.1e-09 Score=109.12 Aligned_cols=84 Identities=24% Similarity=0.283 Sum_probs=40.9
Q ss_pred EEEEEcCCCCCccC-CCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCC-CCCC-CCccccCCCCCCCEEe
Q 006940 422 IDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNG-SIPESLGQLTALRRLN 498 (624)
Q Consensus 422 l~~L~L~~n~l~g~-~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N-~l~g-~iP~~l~~l~~L~~L~ 498 (624)
++.|+|++|.+.+. +|..+..+++|+.|+|++|.+++..|..++.+++|+.|+|++| .+++ .+|..+..+++|+.|+
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 44455555555443 4444455555555555555555444444445555555555555 3443 1344444444455555
Q ss_pred ccCC-cCc
Q 006940 499 LNGN-TLS 505 (624)
Q Consensus 499 Ls~N-~l~ 505 (624)
|++| .++
T Consensus 175 l~~~~~l~ 182 (336)
T 2ast_B 175 LSWCFDFT 182 (336)
T ss_dssp CCCCTTCC
T ss_pred CCCCCCcC
Confidence 5544 444
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.55 E-value=2.5e-08 Score=108.29 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=47.6
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccC-------------CeEeccCCCCCCCCccc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASL-------------EVLDLSYNFFNGSIPES 487 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L-------------~~LdLs~N~l~g~iP~~ 487 (624)
.++.|++++|++ |.+|.++++|++|+.|+|++|.+.|.+|..++++.+| +.|++++|.+++ +|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 488899999999 8999999999999999999999999999999988765 888888888874 4442
Q ss_pred cCCCCCCCEEeccCCcCcccCCc
Q 006940 488 LGQLTALRRLNLNGNTLSGRVPA 510 (624)
Q Consensus 488 l~~l~~L~~L~Ls~N~l~g~iP~ 510 (624)
.++|+.|+|++|.+++ +|.
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~ 108 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPE 108 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCC
T ss_pred ---cCCCCEEEccCCcCCc-ccc
Confidence 2566666666666664 554
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.53 E-value=2.7e-07 Score=100.12 Aligned_cols=94 Identities=21% Similarity=0.332 Sum_probs=46.1
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|++++|.+++ +|..+ .+|+.|+|++|++++ +| .++.+++|+.|++++|++++ +|... ++|+.|++++
T Consensus 155 L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~ 224 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGN 224 (454)
T ss_dssp CCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCS
T ss_pred CCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcC
Confidence 4444444444443 33221 244444555555443 33 35555555555555555553 33321 3455555555
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|+++ .+|. +.. +.+|+.|++++|.
T Consensus 225 n~l~-~lp~-~~~-l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 225 NILE-ELPE-LQN-LPFLTTIYADNNL 248 (454)
T ss_dssp SCCS-SCCC-CTT-CTTCCEEECCSSC
T ss_pred CcCC-cccc-cCC-CCCCCEEECCCCc
Confidence 5555 4553 332 5566667776665
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.53 E-value=1.6e-08 Score=106.30 Aligned_cols=108 Identities=25% Similarity=0.324 Sum_probs=78.0
Q ss_pred EEEEEcCCCCCccCCCcccccc-----cccccccCcCccccccCCCCcCC----C-ccCCeEeccCCCCCCCCccccC--
Q 006940 422 IDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGAIPSSLGT----I-ASLEVLDLSYNFFNGSIPESLG-- 489 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L-----~~L~~L~Ls~N~l~g~ip~~l~~----l-~~L~~LdLs~N~l~g~iP~~l~-- 489 (624)
++.|+|++|.+.+..+..+..+ ++|+.|+|++|.+++..+..+.. + ++|+.|+|++|.+++..+..+.
T Consensus 53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence 7788888888888777777765 88888888888888766654443 3 7888888888888866654433
Q ss_pred --C-CCCCCEEeccCCcCcccCCchh----hhccCCCCEEeccCCCC
Q 006940 490 --Q-LTALRRLNLNGNTLSGRVPAAL----GGRLLHRASFNFTDNAG 529 (624)
Q Consensus 490 --~-l~~L~~L~Ls~N~l~g~iP~~~----~~~l~~l~~l~l~~N~~ 529 (624)
. .++|+.|+|++|.++..-+..+ .....+|+.|++++|..
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 3 3588888888888875433333 33223788888888863
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.51 E-value=2.1e-07 Score=104.75 Aligned_cols=96 Identities=27% Similarity=0.295 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|++++|.|+. +|. .+++|+.|+|++|++++ +| ..+++|+.|+|++|.|+ .+|. .+++|+.|+|++
T Consensus 203 L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 203 LYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR 270 (622)
T ss_dssp CCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred hhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence 4455555555552 332 23677888888888875 55 45677888888888888 5666 567888888888
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAGLC 531 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc 531 (624)
|+++ .+|..+.. +.+|+.|++++|+..+
T Consensus 271 N~L~-~lp~~l~~-l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 271 NQLT-RLPESLIH-LSSETTVNLEGNPLSE 298 (622)
T ss_dssp SCCC-SCCGGGGG-SCTTCEEECCSCCCCH
T ss_pred CCCC-cCCHHHhh-ccccCEEEecCCCCCC
Confidence 8888 77877765 6788888888887543
No 132
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.50 E-value=2.7e-07 Score=100.20 Aligned_cols=80 Identities=24% Similarity=0.227 Sum_probs=65.5
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
.++.|+|++|.+++ +| +..+++|+.|+|++|++++. .++.+++|+.|+|++|++++ +| ++.+++|+.|+|+
T Consensus 171 ~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 171 QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 37788888888887 44 78888888888888888864 47888889999999999886 66 7888889999999
Q ss_pred CCcCcccCC
Q 006940 501 GNTLSGRVP 509 (624)
Q Consensus 501 ~N~l~g~iP 509 (624)
+|++++..+
T Consensus 242 ~N~l~~~~~ 250 (457)
T 3bz5_A 242 VNPLTELDV 250 (457)
T ss_dssp SSCCSCCCC
T ss_pred CCcCCCcCH
Confidence 999886543
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.48 E-value=2.1e-08 Score=106.17 Aligned_cols=109 Identities=26% Similarity=0.335 Sum_probs=88.5
Q ss_pred EEEEEEcCCCCCc-cCCC---cccccccccccccCcCcccc--c---cCCCCcCCCccCCeEeccCCCCC----CCCccc
Q 006940 421 VIDGLGLDNQGLR-GFLP---NGISKLRHLQSINLSGNSIR--G---AIPSSLGTIASLEVLDLSYNFFN----GSIPES 487 (624)
Q Consensus 421 ~l~~L~L~~n~l~-g~~p---~~~~~L~~L~~L~Ls~N~l~--g---~ip~~l~~l~~L~~LdLs~N~l~----g~iP~~ 487 (624)
.++.|+|++|.+. +.++ ..+..+++|+.|+|++|+++ | .+|..+..+++|+.|+|++|.++ +.+|..
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 3778999999997 4555 46778899999999999998 3 45658889999999999999996 678888
Q ss_pred cCCCCCCCEEeccCCcCccc----CCchhhh-ccCCCCEEeccCCCC
Q 006940 488 LGQLTALRRLNLNGNTLSGR----VPAALGG-RLLHRASFNFTDNAG 529 (624)
Q Consensus 488 l~~l~~L~~L~Ls~N~l~g~----iP~~~~~-~l~~l~~l~l~~N~~ 529 (624)
+..+++|+.|+|++|++++. +|..+.. .+.+|+.|++++|..
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 99999999999999999866 4444421 257799999999874
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.45 E-value=3.9e-08 Score=103.31 Aligned_cols=109 Identities=24% Similarity=0.261 Sum_probs=91.0
Q ss_pred EEEEEcCCCCCccCCC----ccccccc-ccccccCcCccccccCCCCcCCC-----ccCCeEeccCCCCCCCCccccC--
Q 006940 422 IDGLGLDNQGLRGFLP----NGISKLR-HLQSINLSGNSIRGAIPSSLGTI-----ASLEVLDLSYNFFNGSIPESLG-- 489 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p----~~~~~L~-~L~~L~Ls~N~l~g~ip~~l~~l-----~~L~~LdLs~N~l~g~iP~~l~-- 489 (624)
++.|+|++|.|++..+ ..+..++ +|+.|+|++|++++..+..+..+ ++|+.|+|++|.+++..+..+.
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 8899999999998777 6788888 89999999999998877777775 9999999999999987776544
Q ss_pred --CC-CCCCEEeccCCcCcccCCchhhhc----cCCCCEEeccCCCCC
Q 006940 490 --QL-TALRRLNLNGNTLSGRVPAALGGR----LLHRASFNFTDNAGL 530 (624)
Q Consensus 490 --~l-~~L~~L~Ls~N~l~g~iP~~~~~~----l~~l~~l~l~~N~~l 530 (624)
.+ ++|+.|+|++|++++..+..+... ..+|+.|++++|...
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 44 899999999999987666555442 257999999999743
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=1.1e-07 Score=95.05 Aligned_cols=81 Identities=25% Similarity=0.373 Sum_probs=64.3
Q ss_pred ccccccccccCcCccccc--cCCCCcCCCccCCeEeccCCCCCCCCccccCCCC--CCCEEeccCCcCcccCCch-----
Q 006940 441 SKLRHLQSINLSGNSIRG--AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT--ALRRLNLNGNTLSGRVPAA----- 511 (624)
Q Consensus 441 ~~L~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~--~L~~L~Ls~N~l~g~iP~~----- 511 (624)
.+|++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|++.+.+|..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 568899999999999998 5667778899999999999999964 3344444 8999999999999888742
Q ss_pred -hhhccCCCCEEe
Q 006940 512 -LGGRLLHRASFN 523 (624)
Q Consensus 512 -~~~~l~~l~~l~ 523 (624)
+...+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 334467787775
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.26 E-value=8.4e-07 Score=92.59 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=82.4
Q ss_pred EEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCcc-ccCCCCCCCE-EeccC
Q 006940 424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRR-LNLNG 501 (624)
Q Consensus 424 ~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~-~l~~l~~L~~-L~Ls~ 501 (624)
.++.++++|+ .+|..+ .++|+.|+|++|+|+...+..|.+|++|+.|+|++|++.+.+|. .+.++++|.. +.+++
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3678889988 577766 36899999999999955556799999999999999999877774 6788988875 77788
Q ss_pred CcCcccCCchhhhccCCCCEEeccCCCC
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
|+++...|..+. .+.+|+.|++++|..
T Consensus 90 N~l~~l~~~~f~-~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 90 NNLLYINPEAFQ-NLPNLQYLLISNTGI 116 (350)
T ss_dssp TTCCEECTTSBC-CCTTCCEEEEEEECC
T ss_pred CcccccCchhhh-hcccccccccccccc
Confidence 999955555554 478899999998864
No 137
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.25 E-value=7.4e-07 Score=100.24 Aligned_cols=84 Identities=31% Similarity=0.420 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.|+|++|.|++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 7889999999997 56 56689999999999999 5776 6789999999999999 8899999999999999999
Q ss_pred CcCcccCCchhhh
Q 006940 502 NTLSGRVPAALGG 514 (624)
Q Consensus 502 N~l~g~iP~~~~~ 514 (624)
|++++.+|..+..
T Consensus 294 N~l~~~~~~~l~~ 306 (622)
T 3g06_A 294 NPLSERTLQALRE 306 (622)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCCcCHHHHHh
Confidence 9999998887654
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.13 E-value=1.4e-07 Score=101.95 Aligned_cols=84 Identities=21% Similarity=0.207 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCccC----CCcccccccccccccCcCccccccCCCCcCC-----CccCCeEeccCCCCCCC----Ccccc
Q 006940 422 IDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGAIPSSLGT-----IASLEVLDLSYNFFNGS----IPESL 488 (624)
Q Consensus 422 l~~L~L~~n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~-----l~~L~~LdLs~N~l~g~----iP~~l 488 (624)
++.|+|++|.++.. ++..+..+++|+.|+|++|.+++..+..+.. .++|+.|+|++|.+++. +|..+
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 337 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH
Confidence 44455555554432 3444444455555555555443322211111 13444444444444432 23333
Q ss_pred CCCCCCCEEeccCCcCc
Q 006940 489 GQLTALRRLNLNGNTLS 505 (624)
Q Consensus 489 ~~l~~L~~L~Ls~N~l~ 505 (624)
..+++|+.|+|++|+++
T Consensus 338 ~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 338 AQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHCSSCCEEECCSSBCH
T ss_pred hhCCCccEEEccCCccc
Confidence 34444444444444444
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.07 E-value=2e-07 Score=100.77 Aligned_cols=107 Identities=21% Similarity=0.149 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCccCCCcccccc-----cccccccCcCcccccc----CCCCcCCCccCCeEeccCCCCCCCCccccCC--
Q 006940 422 IDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIPESLGQ-- 490 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L-----~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~-- 490 (624)
++.|+|++|.+....+..+... ++|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++..+..+..
T Consensus 286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence 6778888888765444444332 5788888888888765 4556666788888888888877554443332
Q ss_pred ---CCCCCEEeccCCcCcc----cCCchhhhccCCCCEEeccCCCC
Q 006940 491 ---LTALRRLNLNGNTLSG----RVPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 491 ---l~~L~~L~Ls~N~l~g----~iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
.++|+.|+|++|++++ .+|..+.. +++|+.|++++|+.
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCL 410 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSC
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCC
Confidence 5678888888888875 66666655 67788888888763
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.95 E-value=1e-06 Score=92.87 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=71.3
Q ss_pred EEEEEcCCCCCccCCCcccc-----cccccccccCcCccccc----cCCCCcCCCccCCeEeccCCCCCC----CCcccc
Q 006940 422 IDGLGLDNQGLRGFLPNGIS-----KLRHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNG----SIPESL 488 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~-----~L~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~LdLs~N~l~g----~iP~~l 488 (624)
++.|+|++|.|...-...+. ..++|+.|+|++|.++. .++..+..+++|+.|||++|.++. .++..+
T Consensus 128 L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L 207 (372)
T 3un9_A 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207 (372)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence 67777877777644333332 34678888888888764 234445667788888888888763 234556
Q ss_pred CCCCCCCEEeccCCcCcccCCchhhh---ccCCCCEEeccCCCC
Q 006940 489 GQLTALRRLNLNGNTLSGRVPAALGG---RLLHRASFNFTDNAG 529 (624)
Q Consensus 489 ~~l~~L~~L~Ls~N~l~g~iP~~~~~---~l~~l~~l~l~~N~~ 529 (624)
...++|+.|+|++|.++..-...+.. ....|+.|++++|+.
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 67778888888888887432222222 136788899888863
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=3.3e-06 Score=84.41 Aligned_cols=76 Identities=28% Similarity=0.327 Sum_probs=64.2
Q ss_pred EEEEEEcCCCCCcc--CCCcccccccccccccCcCccccccCCCCcCCCc--cCCeEeccCCCCCCCCcc-------ccC
Q 006940 421 VIDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA--SLEVLDLSYNFFNGSIPE-------SLG 489 (624)
Q Consensus 421 ~l~~L~L~~n~l~g--~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~LdLs~N~l~g~iP~-------~l~ 489 (624)
.|+.|+|++|.|++ .+|..+..|++|+.|+|++|+|++. ..+..+. +|+.|+|++|.+.+.+|+ .+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 38899999999998 6677888999999999999999975 3344444 999999999999988873 367
Q ss_pred CCCCCCEEe
Q 006940 490 QLTALRRLN 498 (624)
Q Consensus 490 ~l~~L~~L~ 498 (624)
.+++|+.||
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 889999887
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.76 E-value=2.7e-06 Score=89.66 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=80.9
Q ss_pred EEEEEEcCCCCCccCCCccc-ccccccccccCcCccccccCCCCc-----CCCccCCeEeccCCCCCC----CCccccCC
Q 006940 421 VIDGLGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSL-----GTIASLEVLDLSYNFFNG----SIPESLGQ 490 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~-~~L~~L~~L~Ls~N~l~g~ip~~l-----~~l~~L~~LdLs~N~l~g----~iP~~l~~ 490 (624)
.++.|+|++|.|.......+ ..|.+|+.|+|++|.++..-...+ .....|+.|+|++|.++. .++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 48999999999975433333 357789999999999975433333 246789999999999874 34555678
Q ss_pred CCCCCEEeccCCcCccc----CCchhhhccCCCCEEeccCCCC
Q 006940 491 LTALRRLNLNGNTLSGR----VPAALGGRLLHRASFNFTDNAG 529 (624)
Q Consensus 491 l~~L~~L~Ls~N~l~g~----iP~~~~~~l~~l~~l~l~~N~~ 529 (624)
+++|++|+|++|.++.. ++..+.. ..+|+.|++++|..
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~-~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDR-NRQLQELNVAYNGA 223 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGG-CSCCCEEECCSSCC
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhc-CCCcCeEECCCCCC
Confidence 89999999999999743 2233333 46799999999974
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.70 E-value=3.8e-05 Score=79.17 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=80.2
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCC-eEeccCCCCCCCCccccCCCCCCCEEecc
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLE-VLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~-~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 500 (624)
++.|+|++|+++..-+..|.+|.+|+.|+|+.| +...-+..|.+|.+|+ .|+|++ +++..-+..|.++++|+.|+|+
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence 778999999998776778999999999999998 7755567899999999 999988 6774555788999999999999
Q ss_pred CCcCcccCCchhhhccCCCCEEe
Q 006940 501 GNTLSGRVPAALGGRLLHRASFN 523 (624)
Q Consensus 501 ~N~l~g~iP~~~~~~l~~l~~l~ 523 (624)
.|+++ .|+...+....+|+.+.
T Consensus 306 ~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 306 GDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp SSCCC-EECTTTTCTTCCCCEEE
T ss_pred CCccC-ccchhhhcCCcchhhhc
Confidence 99998 56665444466677664
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.68 E-value=3.3e-06 Score=94.16 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=76.3
Q ss_pred EEEEEcC----CCCCccC-----CCcccccccccccccCcCc--cccccCCCCcCC-CccCCeEeccCCCCCC-CCcccc
Q 006940 422 IDGLGLD----NQGLRGF-----LPNGISKLRHLQSINLSGN--SIRGAIPSSLGT-IASLEVLDLSYNFFNG-SIPESL 488 (624)
Q Consensus 422 l~~L~L~----~n~l~g~-----~p~~~~~L~~L~~L~Ls~N--~l~g~ip~~l~~-l~~L~~LdLs~N~l~g-~iP~~l 488 (624)
++.|+|+ .|.+++. ++..+.++++|+.|+|+.+ .+++..+..++. +++|+.|+|++|.+++ .++..+
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 484 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH
Confidence 5666664 5566653 3334666788888888643 355554444443 7889999999999886 456667
Q ss_pred CCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 489 GQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 489 ~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
..+++|+.|+|++|++++.....+...+++|+.|++++|+
T Consensus 485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 8889999999999998765444444457889999999998
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.58 E-value=7.6e-06 Score=77.24 Aligned_cols=107 Identities=17% Similarity=0.270 Sum_probs=77.5
Q ss_pred EEEEEcCCC-CCccC----CCcccccccccccccCcCcccccc----CCCCcCCCccCCeEeccCCCCCCC----Ccccc
Q 006940 422 IDGLGLDNQ-GLRGF----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESL 488 (624)
Q Consensus 422 l~~L~L~~n-~l~g~----~p~~~~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~l~g~----iP~~l 488 (624)
++.|+|++| .|... +...+...++|+.|+|++|.+... +...+...+.|+.|+|++|.++.. +...+
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L 117 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL 117 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH
Confidence 778999998 88642 344566678999999999998642 233455567899999999998842 45667
Q ss_pred CCCCCCCEEec--cCCcCcccCCchhhhc---cCCCCEEeccCCC
Q 006940 489 GQLTALRRLNL--NGNTLSGRVPAALGGR---LLHRASFNFTDNA 528 (624)
Q Consensus 489 ~~l~~L~~L~L--s~N~l~g~iP~~~~~~---l~~l~~l~l~~N~ 528 (624)
...++|+.|+| ++|.+...--..+... ...|+.|++++|.
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 77889999999 8899974422222221 3678899987774
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.38 E-value=0.00016 Score=74.50 Aligned_cols=35 Identities=6% Similarity=0.139 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCcccc
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR 457 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~ 457 (624)
|+.|.|++ +++..-+..|.+|++|+.|+|+.|.+.
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc
Confidence 55566666 565544556666677777777666543
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.32 E-value=1.2e-05 Score=89.67 Aligned_cols=86 Identities=16% Similarity=0.234 Sum_probs=36.2
Q ss_pred ccccccccccCcCccccccCCCCcCC-CccCCeEeccCCCCCCCCcccc-CCCCCCCEEeccCCcCcccCCchhhhccCC
Q 006940 441 SKLRHLQSINLSGNSIRGAIPSSLGT-IASLEVLDLSYNFFNGSIPESL-GQLTALRRLNLNGNTLSGRVPAALGGRLLH 518 (624)
Q Consensus 441 ~~L~~L~~L~Ls~N~l~g~ip~~l~~-l~~L~~LdLs~N~l~g~iP~~l-~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~ 518 (624)
..+++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+..+...+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3344444444443 333332223332 4445555555555443322222 334555555555555533222222222344
Q ss_pred CCEEeccCC
Q 006940 519 RASFNFTDN 527 (624)
Q Consensus 519 l~~l~l~~N 527 (624)
|+.|++++|
T Consensus 508 L~~L~l~~~ 516 (594)
T 2p1m_B 508 MRSLWMSSC 516 (594)
T ss_dssp SSEEEEESS
T ss_pred CCEEeeeCC
Confidence 555555444
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.23 E-value=3.8e-05 Score=85.43 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=16.6
Q ss_pred cccccccccCcCccccccCCCCc----CCCccCCeEeccCCC
Q 006940 442 KLRHLQSINLSGNSIRGAIPSSL----GTIASLEVLDLSYNF 479 (624)
Q Consensus 442 ~L~~L~~L~Ls~N~l~g~ip~~l----~~l~~L~~LdLs~N~ 479 (624)
++++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 44455555555554443322222 133455555555443
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.22 E-value=0.00014 Score=80.93 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=16.3
Q ss_pred EEEEEcCCCCCc----cCCCcccccccccccccCcCcccc
Q 006940 422 IDGLGLDNQGLR----GFLPNGISKLRHLQSINLSGNSIR 457 (624)
Q Consensus 422 l~~L~L~~n~l~----g~~p~~~~~L~~L~~L~Ls~N~l~ 457 (624)
++.|+|++|.++ +.++..+.++++|+.|+|++|.+.
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 444555555544 122223334455555555554443
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.09 E-value=0.00088 Score=59.09 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=36.1
Q ss_pred eEeccCCCCC-CCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCCCEEeccCCCCCCCC
Q 006940 472 VLDLSYNFFN-GSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 533 (624)
Q Consensus 472 ~LdLs~N~l~-g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~~lc~~ 533 (624)
.++.+++.|+ ..+|..+. .+|+.|+|++|+|+ .+|...+..+.+|+.|+|.+|++.|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCeeccC
Confidence 4555555554 24443321 34667777777776 556555555667777888888887764
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.72 E-value=0.00012 Score=68.84 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=66.6
Q ss_pred EEEEEcCCCCCccC----CCcccccccccccccCcCcccccc----CCCCcCCCccCCeEec--cCCCCCCC----Cccc
Q 006940 422 IDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDL--SYNFFNGS----IPES 487 (624)
Q Consensus 422 l~~L~L~~n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdL--s~N~l~g~----iP~~ 487 (624)
++.|+|++|.|... +...+...+.|+.|+|++|.+... +...+...+.|+.|+| ++|.++.. +...
T Consensus 67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~ 146 (185)
T 1io0_A 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 146 (185)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence 78899999999642 344566668999999999999753 4556777889999999 88998743 3345
Q ss_pred cCCCCCCCEEeccCCcCc
Q 006940 488 LGQLTALRRLNLNGNTLS 505 (624)
Q Consensus 488 l~~l~~L~~L~Ls~N~l~ 505 (624)
+...++|+.|+|++|.+.
T Consensus 147 L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 147 LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEeccCCCCC
Confidence 566789999999999885
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.48 E-value=0.00034 Score=73.09 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=7.1
Q ss_pred CCCCCEEeccCCcCc
Q 006940 491 LTALRRLNLNGNTLS 505 (624)
Q Consensus 491 l~~L~~L~Ls~N~l~ 505 (624)
+++|+.|+|+.|.++
T Consensus 278 ~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 278 LPQLETMDISAGVLT 292 (362)
T ss_dssp GGGCSEEECCSSCCB
T ss_pred CCCCCEEECCCCCCC
Confidence 344445555444444
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.34 E-value=0.00049 Score=63.92 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=55.5
Q ss_pred EEEEEEcCCCCCccCCCcccccccccccccCcCcc-ccccCCCCcCCC----ccCCeEeccCCC-CCCCCccccCCCCCC
Q 006940 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTI----ASLEVLDLSYNF-FNGSIPESLGQLTAL 494 (624)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~g~ip~~l~~l----~~L~~LdLs~N~-l~g~iP~~l~~l~~L 494 (624)
.|+.|+|+++.++..--..+.++++|+.|+|+++. ++..--..+..+ ++|+.|+|+++. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 58889999988765434456778888888888874 553322334443 368888888874 552222345677888
Q ss_pred CEEeccCCc
Q 006940 495 RRLNLNGNT 503 (624)
Q Consensus 495 ~~L~Ls~N~ 503 (624)
+.|+|++..
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 888888764
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.24 E-value=0.006 Score=53.67 Aligned_cols=37 Identities=30% Similarity=0.275 Sum_probs=20.7
Q ss_pred cCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCc
Q 006940 469 SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505 (624)
Q Consensus 469 ~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 505 (624)
+|+.|+|++|+|+..-+..+..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3555566666655333344555666666666666553
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.91 E-value=0.0083 Score=63.45 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=76.1
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCcccc-----ccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCE
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-----GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~-----g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~ 496 (624)
|+.+.| .++++..-...|.++.+|+.++|.+|.+. ..-+..|.+|.+|+.++|.+ .++-.-...+.++++|+.
T Consensus 250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence 556777 45566555678899999999999988775 23457788999999999994 466344467888999999
Q ss_pred EeccCCcCcccCCchhhhccCCCCEEeccCCC
Q 006940 497 LNLNGNTLSGRVPAALGGRLLHRASFNFTDNA 528 (624)
Q Consensus 497 L~Ls~N~l~g~iP~~~~~~l~~l~~l~l~~N~ 528 (624)
|.|..| ++ .|+...+... +|+.+.+.+|.
T Consensus 328 l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 328 LTIPAN-VT-QINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp EEECTT-CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred EEECcc-cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence 999655 55 5555444445 89999998885
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.82 E-value=0.0026 Score=59.01 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=62.2
Q ss_pred cccccccCcCccccccCCCCcCCCccCCeEeccCCC-CCCCCccccCCC----CCCCEEeccCCc-CcccCCchhhhccC
Q 006940 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-FNGSIPESLGQL----TALRRLNLNGNT-LSGRVPAALGGRLL 517 (624)
Q Consensus 444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~-l~g~iP~~l~~l----~~L~~L~Ls~N~-l~g~iP~~~~~~l~ 517 (624)
.+|+.|||+++.++..--..+..+++|+.|+|+++. ++..--..++.+ ++|+.|+|+++. ++..==..+.. ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CC
Confidence 479999999999876544567899999999999985 553222334554 479999999974 76321123443 68
Q ss_pred CCCEEeccCCCCCC
Q 006940 518 HRASFNFTDNAGLC 531 (624)
Q Consensus 518 ~l~~l~l~~N~~lc 531 (624)
+|+.|++++.+.+.
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 89999999876544
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.70 E-value=0.0038 Score=65.10 Aligned_cols=104 Identities=12% Similarity=0.167 Sum_probs=70.4
Q ss_pred EEEEEEcCCCC-CccCCCcccccccccccccCcCccccccCCCCcC--CCccCCeEeccC--CCCCCC-----Ccccc--
Q 006940 421 VIDGLGLDNQG-LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG--TIASLEVLDLSY--NFFNGS-----IPESL-- 488 (624)
Q Consensus 421 ~l~~L~L~~n~-l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~--~l~~L~~LdLs~--N~l~g~-----iP~~l-- 488 (624)
.|+.|.|++|. + .++. + .+++|+.|+|..+.++...-..+. .+++|+.|+|+. |...|. +...+
T Consensus 173 ~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 173 LLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 37889998773 2 2343 3 388999999998887644333343 689999999864 222221 11122
Q ss_pred CCCCCCCEEeccCCcCcccCCchhhh--ccCCCCEEeccCCC
Q 006940 489 GQLTALRRLNLNGNTLSGRVPAALGG--RLLHRASFNFTDNA 528 (624)
Q Consensus 489 ~~l~~L~~L~Ls~N~l~g~iP~~~~~--~l~~l~~l~l~~N~ 528 (624)
..+++|++|+|.+|.+....+..+.. .+++|+.|+++.|.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 35789999999999998655444442 35789999998876
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.41 E-value=0.021 Score=60.33 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=64.3
Q ss_pred EEEEEcCCCCCc-----cCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCE
Q 006940 422 IDGLGLDNQGLR-----GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496 (624)
Q Consensus 422 l~~L~L~~n~l~-----g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~ 496 (624)
|+.+.|.+|.+. ..-+..|.+|.+|+.++|. +++.-.-...|.+|.+|+.++|..| ++..-+..|.++ +|+.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 677888777765 3445678999999999999 4577555678999999999999665 663445678888 9999
Q ss_pred EeccCCcCc
Q 006940 497 LNLNGNTLS 505 (624)
Q Consensus 497 L~Ls~N~l~ 505 (624)
|++++|.+.
T Consensus 350 l~l~~n~~~ 358 (401)
T 4fdw_A 350 VKVEGTTPP 358 (401)
T ss_dssp EEECCSSCC
T ss_pred EEEcCCCCc
Confidence 999999876
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.45 E-value=0.014 Score=55.01 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=46.2
Q ss_pred EEEEEcCCC-CCcc----CCCcccccccccccccCcCccccccCCCC----cCCCccCCeEeccCCCCCCC----Ccccc
Q 006940 422 IDGLGLDNQ-GLRG----FLPNGISKLRHLQSINLSGNSIRGAIPSS----LGTIASLEVLDLSYNFFNGS----IPESL 488 (624)
Q Consensus 422 l~~L~L~~n-~l~g----~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~----l~~l~~L~~LdLs~N~l~g~----iP~~l 488 (624)
++.|+|++| .|.. .+-..+..=+.|+.|+|++|.+...--.. +..=+.|+.|+|+.|.++.. +-+.+
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL 122 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST 122 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence 556777764 5532 12233444567777777777776332222 22335677788888777621 22334
Q ss_pred CCCCCCCEEeccCC
Q 006940 489 GQLTALRRLNLNGN 502 (624)
Q Consensus 489 ~~l~~L~~L~Ls~N 502 (624)
..-+.|+.|+|++|
T Consensus 123 ~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 123 LVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTCCCSEEECCCC
T ss_pred hhCCceeEEECCCC
Confidence 44566778888754
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.56 E-value=0.058 Score=50.85 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=59.1
Q ss_pred cccccccccCcCc-ccccc----CCCCcCCCccCCeEeccCCCCCC----CCccccCCCCCCCEEeccCCcCcccCCchh
Q 006940 442 KLRHLQSINLSGN-SIRGA----IPSSLGTIASLEVLDLSYNFFNG----SIPESLGQLTALRRLNLNGNTLSGRVPAAL 512 (624)
Q Consensus 442 ~L~~L~~L~Ls~N-~l~g~----ip~~l~~l~~L~~LdLs~N~l~g----~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~ 512 (624)
+-+.|+.|+|++| ++... +-..+..-..|+.|+|++|++.. .+-+.+..-+.|+.|+|+.|.+...--..+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3468999999986 66421 22345556789999999999972 233444456889999999999974322222
Q ss_pred hhc---cCCCCEEeccCCC
Q 006940 513 GGR---LLHRASFNFTDNA 528 (624)
Q Consensus 513 ~~~---l~~l~~l~l~~N~ 528 (624)
... -..|+.|+|++|.
T Consensus 119 a~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHTTTTCCCSEEECCCCS
T ss_pred HHHHhhCCceeEEECCCCc
Confidence 222 2458899998764
No 161
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=91.13 E-value=0.041 Score=38.06 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 006940 558 LIFLLIICSMVWWKRRQN 575 (624)
Q Consensus 558 ~~~~~~~~~~~~~~~r~~ 575 (624)
+++++++++++++|||++
T Consensus 23 ~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 23 LLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhhhhHh
Confidence 333444444555555544
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.88 E-value=0.42 Score=49.40 Aligned_cols=100 Identities=8% Similarity=0.087 Sum_probs=49.1
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
|+.+.+..+ ++..-...|.++.+|+.+.+..+ +...-...|..+.+|+.+++.++.++-.-...+.++.+|+.+.|..
T Consensus 242 L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 242 LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 334444332 33333334555666666665433 3322234556666666666666665522234566666666666654
Q ss_pred CcCcccCCchhhhccCCCCEEecc
Q 006940 502 NTLSGRVPAALGGRLLHRASFNFT 525 (624)
Q Consensus 502 N~l~g~iP~~~~~~l~~l~~l~l~ 525 (624)
+ ++ .|+...+....+|+.+.+.
T Consensus 320 ~-l~-~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 320 A-LK-TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp T-CC-EECTTTTTTCTTCCCCCCC
T ss_pred c-cc-EEHHHHhhCCCCCCEEEEC
Confidence 3 33 3443333223445544443
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.86 E-value=0.87 Score=47.35 Aligned_cols=86 Identities=14% Similarity=0.253 Sum_probs=47.2
Q ss_pred cccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccC
Q 006940 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLL 517 (624)
Q Consensus 438 ~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~ 517 (624)
..|.++..|+.+.+. +.++..-...|.++.+|+.++|..+ ++-.-...|.++.+|+.+.|..+ ++ .|+...+....
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~ 357 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCT 357 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCT
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCC
Confidence 345566666666664 3344233445666667777766543 33222345666667777666543 43 45544444455
Q ss_pred CCCEEeccCC
Q 006940 518 HRASFNFTDN 527 (624)
Q Consensus 518 ~l~~l~l~~N 527 (624)
+|+.+.+.+|
T Consensus 358 ~L~~i~~~~~ 367 (394)
T 4gt6_A 358 ALNNIEYSGS 367 (394)
T ss_dssp TCCEEEESSC
T ss_pred CCCEEEECCc
Confidence 6666666655
No 164
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=87.28 E-value=0.21 Score=34.39 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 006940 558 LIFLLIICSMVWWKRRQNI 576 (624)
Q Consensus 558 ~~~~~~~~~~~~~~~r~~~ 576 (624)
+++++++++++++|||+++
T Consensus 22 ~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 22 ILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhhhhhhh
Confidence 3334444445555555443
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=86.63 E-value=0.74 Score=47.88 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=40.3
Q ss_pred cccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhhccCCC
Q 006940 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHR 519 (624)
Q Consensus 440 ~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~~l~~l 519 (624)
|..+.+|+.+.+..+ +...-...|.++.+|+.++|..+ ++-.-...+.++++|+.++|..| ++ .|+...+....+|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L 368 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINL 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCC
Confidence 445555555555433 33222344556666666666533 33122344556666666666544 33 3443333334455
Q ss_pred CEEeccC
Q 006940 520 ASFNFTD 526 (624)
Q Consensus 520 ~~l~l~~ 526 (624)
+.+.+..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 5555543
No 166
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=86.11 E-value=0.1 Score=35.94 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 006940 558 LIFLLIICSMVWWKRRQNI 576 (624)
Q Consensus 558 ~~~~~~~~~~~~~~~r~~~ 576 (624)
+++++++++++|.||||.+
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 3344444445555555543
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=85.93 E-value=0.74 Score=47.92 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=58.6
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
++.+.+..+ ++..-...|.++.+|+.++|..+ ++-.-...|.++.+|+.++|..| ++-.-...+.++.+|+.++|..
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 556666543 55444567899999999999754 66344678999999999999877 6633346789999999999865
Q ss_pred C
Q 006940 502 N 502 (624)
Q Consensus 502 N 502 (624)
+
T Consensus 376 ~ 376 (394)
T 4fs7_A 376 R 376 (394)
T ss_dssp G
T ss_pred C
Confidence 4
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=83.97 E-value=1.5 Score=45.54 Aligned_cols=80 Identities=13% Similarity=0.223 Sum_probs=59.7
Q ss_pred EEEEEcCCCCCccCCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccC
Q 006940 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (624)
Q Consensus 422 l~~L~L~~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 501 (624)
|+.+.+. ++++..-...|.++.+|+.++|..+ ++-.-...|.+|.+|+.+.|..+ ++-.-...|.++++|+.+++.+
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 5566664 4455444567889999999999765 55344678999999999999765 6523346789999999999988
Q ss_pred CcC
Q 006940 502 NTL 504 (624)
Q Consensus 502 N~l 504 (624)
|..
T Consensus 367 ~~~ 369 (394)
T 4gt6_A 367 SRS 369 (394)
T ss_dssp CHH
T ss_pred cee
Confidence 754
No 169
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=81.53 E-value=5.2 Score=34.21 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=32.3
Q ss_pred ccEEEeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEECCeecc
Q 006940 269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAF 313 (624)
Q Consensus 269 ~lt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~ 313 (624)
.++|...++..|.|.+.++++.-. ...|.++|+|||..+.
T Consensus 40 ~v~~~V~v~~aG~Y~l~~rya~~~-----~~~~~~~l~VnG~~~~ 79 (127)
T 2vzp_A 40 SVEWTVTVPSAGTYDVVVRYANGT-----TTSRPLDFSVNGSISA 79 (127)
T ss_dssp EEEEEEEESSSEEEEEEEEEECCS-----SSCCCEEEEETTEEEE
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCC-----CCCeEEEEEECCEEee
Confidence 489999888889999999998521 2468899999998643
No 170
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=80.65 E-value=25 Score=30.70 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=55.5
Q ss_pred CCCceEEeecCCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEEeecCCCCccc---ceeEEEEEEeeCCeEEEEEe
Q 006940 82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDD---RAFAEALVFLRDGTVSICFH 158 (624)
Q Consensus 82 ~~~~~Y~~~~~~~g~y~vRl~F~~~~y~~~~~~~~Fdv~~~~~~~~~v~~~~~~~~~---~~~~E~~~~~~~~~l~i~f~ 158 (624)
|..-.|++.+...|.|.|++.+..+. ...+.++|++||....++. |...+. .....+.+..+.+.-.|.|.
T Consensus 38 G~~v~~~V~v~~aG~Y~l~~ryang~----~~~r~~~l~VNG~~~~~v~--~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~ 111 (145)
T 2w3j_A 38 GASIVWSLSAASAKTYTAQIRFGNGG----TSARRATVVVNDSQIKTLD--FPTNSNWTQWQTVNVDIPLKAGTNSIKLV 111 (145)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCS----SSCCCEEEEETTEEEEEEC--CCCCSCTTSCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEEEEEEECCC----CCCeEEEEEECCeEeeEEE--ecCCCCCCeeEEEEEEEEECCCceEEEEE
Confidence 44557888777789999999887432 2346899999997644443 222111 11122233346666666666
Q ss_pred eC-CCCCCcEeeEEEEEcCC
Q 006940 159 ST-GHGDPAILSLEILQVDD 177 (624)
Q Consensus 159 ~~-~~~~pfIsaIEl~~l~~ 177 (624)
.. +.+.|-|..|+|.+.+.
T Consensus 112 ~~~~~g~~niD~i~v~~~~~ 131 (145)
T 2w3j_A 112 AETADGLANIDSIRVTGNGI 131 (145)
T ss_dssp ECSTTCCCEEEEEEECSTTE
T ss_pred EecCcCCEEEEEEEEEcCCC
Confidence 53 34668899999875543
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.39 E-value=3 Score=42.73 Aligned_cols=90 Identities=9% Similarity=0.086 Sum_probs=66.1
Q ss_pred CCCcccccccccccccCcCccccccCCCCcCCCccCCeEeccCCCCCCCCccccCCCCCCCEEeccCCcCcccCCchhhh
Q 006940 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG 514 (624)
Q Consensus 435 ~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~~~~ 514 (624)
.-...+.++..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +...-...+.++++|+.+.+.++.++ .|++..+.
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~ 307 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFM 307 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTT
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhc
Confidence 33456778889999988765 55344567888999999999754 44233356788999999999988887 66665555
Q ss_pred ccCCCCEEeccCC
Q 006940 515 RLLHRASFNFTDN 527 (624)
Q Consensus 515 ~l~~l~~l~l~~N 527 (624)
...+|+.+.+..+
T Consensus 308 ~c~~L~~i~lp~~ 320 (379)
T 4h09_A 308 DCVKLSSVTLPTA 320 (379)
T ss_dssp TCTTCCEEECCTT
T ss_pred CCCCCCEEEcCcc
Confidence 4677888888654
No 172
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=79.95 E-value=5.9 Score=34.74 Aligned_cols=39 Identities=18% Similarity=0.462 Sum_probs=31.7
Q ss_pred ccEEEeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEECCeec
Q 006940 269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIA 312 (624)
Q Consensus 269 ~lt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~ 312 (624)
.++|...+...|.|.+.+.++.- ..+.|.++|+|||..+
T Consensus 41 ~v~~~V~v~~aG~Y~l~~ryan~-----~~~~~~~~l~VNG~~~ 79 (144)
T 2w47_A 41 YIEWNVNAPSSGSYALIFRYANG-----TTANRPMRITVNGNIV 79 (144)
T ss_dssp EEEEEEEESSSEEEEEEEEEECC-----SSSCCCEEEEETTEEE
T ss_pred EEEEEEECCCCcEEEEEEEEECC-----CCCCeEEEEEECCeEe
Confidence 48999888888999999999852 1246899999999864
No 173
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=77.87 E-value=0.38 Score=32.16 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=14.1
Q ss_pred CCceEEEEhhhHHHHHHHHHHHHHHHHHH
Q 006940 544 STSAKIGIGFGVLGLIFLLIICSMVWWKR 572 (624)
Q Consensus 544 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 572 (624)
+...+.++++++++.+++++.+.++++||
T Consensus 9 s~GaIAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCceeeeehHHHHHHHHHHHHHHHHeec
Confidence 33445555566555554444444444433
No 174
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=77.63 E-value=35 Score=29.62 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=56.4
Q ss_pred CCCceEEeecCCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEE-EEeecCCCCcc---cceeEEEEEEeeCCeEEEEE
Q 006940 82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQI-YSLKSGWSDHD---DRAFAEALVFLRDGTVSICF 157 (624)
Q Consensus 82 ~~~~~Y~~~~~~~g~y~vRl~F~~~~y~~~~~~~~Fdv~~~~~~~-~~v~~~~~~~~---~~~~~E~~~~~~~~~l~i~f 157 (624)
|..-.|++.+.+.|.|.|++.+..+.. ..+.++|++||... .++. |...+ .......-+..+.+.-.|+|
T Consensus 39 g~~v~~~V~v~~aG~Y~l~~ryan~~~----~~~~~~l~VNG~~~~~~v~--~p~Tg~w~~w~~~~~~v~L~aG~ntI~l 112 (144)
T 2w47_A 39 GGYIEWNVNAPSSGSYALIFRYANGTT----ANRPMRITVNGNIVKPSMD--FVSTGAWTTWNEAGIVANLNQGNNVIRA 112 (144)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCSS----SCCCEEEEETTEEEEEEEC--CCCCSSTTCCEEEEEEEEECSEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCCC----CCeEEEEEECCeEeeeEEE--ecCCCCCCeeEEEEEEEEECCCccEEEE
Confidence 555688888777899999999885422 34679999999652 2332 22211 11112222445666666666
Q ss_pred eeC-CCCCCcEeeEEEEEcCC
Q 006940 158 HST-GHGDPAILSLEILQVDD 177 (624)
Q Consensus 158 ~~~-~~~~pfIsaIEl~~l~~ 177 (624)
... ..+.|.|..|+|.+.+.
T Consensus 113 ~~~~~~g~~niD~i~v~~~~~ 133 (144)
T 2w47_A 113 TAIASDGGPNVDYLKVFSANA 133 (144)
T ss_dssp EECSTTCCCEEEEEEEEECTT
T ss_pred EEeCCCCCEEEeEEEEEeCCC
Confidence 543 34568999999987654
No 175
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=77.45 E-value=31 Score=30.58 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=54.0
Q ss_pred ceEE-eecCCCceeEEEEEEecccCC---CC--C-CCCcEEEEEcCeEEEEeecCCCCc---ccceeEEEEEEeeCCeEE
Q 006940 85 NCYI-INRVPKGHYNVRIFFGLVTLT---SF--D-HEPLFDISVEGTQIYSLKSGWSDH---DDRAFAEALVFLRDGTVS 154 (624)
Q Consensus 85 ~~Y~-~~~~~~g~y~vRl~F~~~~y~---~~--~-~~~~Fdv~~~~~~~~~v~~~~~~~---~~~~~~E~~~~~~~~~l~ 154 (624)
-.++ +.+.+.|.|.|++.|..+... +. + ..+..+|.+||..-.++. |... +......+.+..+.+.-.
T Consensus 49 vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~--fp~Tg~W~~~~~~tv~V~L~aG~Nt 126 (156)
T 2wz8_A 49 LQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHY--FFNTRGWNTYRTDIIDVYLNAGNNT 126 (156)
T ss_dssp EEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEE--ECCCSSTTCCEEEEEEEEECSEEEE
T ss_pred EEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEE--eCCCCCCCcceEEEEEEEECCCceE
Confidence 3555 666667999999999865321 01 1 357899999986522332 2221 122223334445777788
Q ss_pred EEEeeC--CCCCCcEeeEEEEEcC
Q 006940 155 ICFHST--GHGDPAILSLEILQVD 176 (624)
Q Consensus 155 i~f~~~--~~~~pfIsaIEl~~l~ 176 (624)
|.|... ....|-|-.|+|.+..
T Consensus 127 I~~~~~~~~~~~pdiD~i~v~~~~ 150 (156)
T 2wz8_A 127 IRFYNGTSGSYAPNIDKIAIAALE 150 (156)
T ss_dssp EEEECCSTTCBCCEEEEEEEEC--
T ss_pred EEEEecCCCCCCcEEEEEEEeccc
Confidence 888866 3445889999987543
No 176
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=75.58 E-value=9.5 Score=33.52 Aligned_cols=39 Identities=13% Similarity=0.376 Sum_probs=31.7
Q ss_pred ccEEEeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEECCeec
Q 006940 269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIA 312 (624)
Q Consensus 269 ~lt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~ 312 (624)
.++|+..++..|.|.+.+.++.- ..+.|.++|+|||...
T Consensus 40 ~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~ 78 (145)
T 2w3j_A 40 SIVWSLSAASAKTYTAQIRFGNG-----GTSARRATVVVNDSQI 78 (145)
T ss_dssp EEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTEEE
T ss_pred EEEEEEECCCCeEEEEEEEEECC-----CCCCeEEEEEECCeEe
Confidence 48999888888999999999832 1246999999999764
No 177
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=69.57 E-value=12 Score=32.56 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=31.0
Q ss_pred ccEEEeecCCCCcEEEEEEEEeecCCCCCCceEEEEEEECCeec
Q 006940 269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIA 312 (624)
Q Consensus 269 ~lt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~ 312 (624)
.++|...++..|.|.+.+.++.- ....|..+|+|||...
T Consensus 40 ~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~ 78 (139)
T 2w87_A 40 AVVWAIDATSSGRRTLTIRYANG-----GTANRNGSLVINGGSN 78 (139)
T ss_dssp EEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTTTT
T ss_pred EEEEEEECCCCcEEEEEEEEECC-----CCCCceEEEEECCEEc
Confidence 48898888788999999999752 1236889999999754
No 178
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=67.31 E-value=55 Score=27.48 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=51.8
Q ss_pred CCCCceEEeecCCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEEeecCCCCccc-ceeEE--EEEEeeCCeEEEEE
Q 006940 81 EGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDD-RAFAE--ALVFLRDGTVSICF 157 (624)
Q Consensus 81 ~~~~~~Y~~~~~~~g~y~vRl~F~~~~y~~~~~~~~Fdv~~~~~~~~~v~~~~~~~~~-~~~~E--~~~~~~~~~l~i~f 157 (624)
.|..-.|++.+...|.|.|++.+..+. ...+.++|++||.....-. .|..... ..+.+ ..+..+.+.-.|.|
T Consensus 37 ~g~~v~~~V~v~~aG~Y~l~~rya~~~----~~~~~~~l~VnG~~~~~~v-~~p~tg~W~~w~~~~~~v~L~aG~ntI~l 111 (127)
T 2vzp_A 37 AGSSVEWTVTVPSAGTYDVVVRYANGT----TTSRPLDFSVNGSISASGV-AFGSTGTWPAWTTKTVRVTLAAGVNKIKA 111 (127)
T ss_dssp TTCEEEEEEEESSSEEEEEEEEEECCS----SSCCCEEEEETTEEEEEEE-CCCCCSSTTCCEEEEEEEEECSEEEEEEE
T ss_pred CCCEEEEEEEcCCCCEEEEEEEEEcCC----CCCeEEEEEECCEEeeeEE-EecCCCCCCceEEEEEEEEECCCceEEEE
Confidence 355668888887789999999998643 2346799999996532211 2322111 01222 23334566656666
Q ss_pred eeC-CCCCCcEeeEEE
Q 006940 158 HST-GHGDPAILSLEI 172 (624)
Q Consensus 158 ~~~-~~~~pfIsaIEl 172 (624)
... ..+.|-|..|+|
T Consensus 112 ~~~~~~~~~niD~i~v 127 (127)
T 2vzp_A 112 VATTANGGPNVDKITL 127 (127)
T ss_dssp EECSTTCCCEEEEEEC
T ss_pred EEeCCCCCeEEEEEEC
Confidence 543 345677877764
No 179
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=66.97 E-value=27 Score=35.83 Aligned_cols=79 Identities=19% Similarity=0.358 Sum_probs=53.3
Q ss_pred ceEEeecCCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEEeecCCCCcccceeEEEEEEeeCCeEEEEEeeCCC-C
Q 006940 85 NCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGH-G 163 (624)
Q Consensus 85 ~~Y~~~~~~~g~y~vRl~F~~~~y~~~~~~~~Fdv~~~~~~~~~v~~~~~~~~~~~~~E~~~~~~~~~l~i~f~~~~~-~ 163 (624)
+.+++. .++|.|.|.+.+-.. +.=.|...+. ..+. +..+.....++.+.+.++.+.+.+..... .
T Consensus 78 ~~f~v~-~~~g~Y~v~v~~g~~--------~~~~v~~e~~--~~~~---~~~g~~~~~~~~v~~~~g~~~l~~~~~~~g~ 143 (375)
T 2o14_A 78 NTFNVD-LPNGLYEVKVTLGNT--------ARASVAAEGV--FQVI---NMTGDGAEDTFQIPVTDGQLNLLVTEGKAGT 143 (375)
T ss_dssp CCEEEE-CCSEEEEEEEEESSC--------SEEEEEETTE--EEEE---EEESTTCEEEEEEEECSSEEEEEEEESSTTS
T ss_pred eEEEEE-cCCCceEEEEEecCC--------cceEEEEcce--EEEE---ecCCCcEEEEEEEEeeCCeEEEeeeeccCCC
Confidence 344443 457999999999854 2334555653 3333 34455567778888899999999764433 3
Q ss_pred CCcEeeEEEEEcCC
Q 006940 164 DPAILSLEILQVDD 177 (624)
Q Consensus 164 ~pfIsaIEl~~l~~ 177 (624)
.+++++||+.+.+.
T Consensus 144 ~~~l~~i~v~~~~~ 157 (375)
T 2o14_A 144 AFTLSALKIKKLSD 157 (375)
T ss_dssp CCEEEEEEEEEEES
T ss_pred CcccceEEEeccCC
Confidence 58899999998764
No 180
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=62.06 E-value=77 Score=27.26 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=53.0
Q ss_pred CCCceEEeecCCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEE--EEeecCCCCcc---cceeEEEEEEeeCCeEEEE
Q 006940 82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQI--YSLKSGWSDHD---DRAFAEALVFLRDGTVSIC 156 (624)
Q Consensus 82 ~~~~~Y~~~~~~~g~y~vRl~F~~~~y~~~~~~~~Fdv~~~~~~~--~~v~~~~~~~~---~~~~~E~~~~~~~~~l~i~ 156 (624)
|..-.|++.+...|.|.|++.+..+. ...+..+|++||... .++. |.... .....+..+..+.+.-.|.
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~ryang~----~~~r~~~l~VNG~~~g~~~v~--~p~Tg~W~~w~t~~~~v~L~aG~ntI~ 111 (139)
T 2w87_A 38 GAAVVWAIDATSSGRRTLTIRYANGG----TANRNGSLVINGGSNGNYTVS--LPTTGAWTTWQTATIDVDLVQGNNIVQ 111 (139)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCS----SSCCCEEEEETTTTTCEEEEC--CCCCSSTTCCEEEEEEEEECSEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCC----CCCceEEEEECCEEcceeEEE--ecCCCCCCccEEEEEEEEECCCceEEE
Confidence 44457787777789999999987542 124679999998653 3332 22211 1112223333456666666
Q ss_pred EeeCC-CCCCcEeeEEEEE
Q 006940 157 FHSTG-HGDPAILSLEILQ 174 (624)
Q Consensus 157 f~~~~-~~~pfIsaIEl~~ 174 (624)
|.... .+.|-|.-|+|.+
T Consensus 112 l~~~~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 112 LSATTAEGLPNIDSLSVVG 130 (139)
T ss_dssp EEESSTTCCCEEEEEEEES
T ss_pred EEEcCCCCCEEEEEEEEec
Confidence 66543 3678899999874
No 181
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=61.56 E-value=12 Score=33.47 Aligned_cols=79 Identities=20% Similarity=0.184 Sum_probs=45.5
Q ss_pred ccEEE-eecCCCCcEEEEEEEEeecCC-----CCCCceEEEEEEECCeecccCCceeeecCCceeeEEEEEEEeeeCeeE
Q 006940 269 DLQYT-MDVDPNRNYSIWLHFAEIDNT-----ITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTL 342 (624)
Q Consensus 269 ~lt~~-~~v~~~~~y~vrLhFaEi~~~-----~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~l 342 (624)
.++|. ..++..|.|.|.++|+.-... ......|...|+|||... ..++... ++.-...-.....+.+..|.=
T Consensus 48 ~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~-~~v~fp~-Tg~W~~~~~~tv~V~L~aG~N 125 (156)
T 2wz8_A 48 YLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPE-KGHYFFN-TRGWNTYRTDIIDVYLNAGNN 125 (156)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCC-EEEEECC-CSSTTCCEEEEEEEEECSEEE
T ss_pred EEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCcee-eEEEeCC-CCCCCcceEEEEEEEECCCce
Confidence 48898 888888999999999864210 011247999999999752 2222211 221111112223455566655
Q ss_pred EEEeCCC
Q 006940 343 TVTLHPK 349 (624)
Q Consensus 343 ~i~~~~~ 349 (624)
+|+|...
T Consensus 126 tI~~~~~ 132 (156)
T 2wz8_A 126 TIRFYNG 132 (156)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 6666654
No 182
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=40.65 E-value=7.2 Score=25.33 Aligned_cols=7 Identities=43% Similarity=0.463 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 006940 567 MVWWKRR 573 (624)
Q Consensus 567 ~~~~~~r 573 (624)
.++.|||
T Consensus 28 ~~~iRRr 34 (35)
T 1iij_A 28 GILIKRR 34 (35)
T ss_dssp THHHHHC
T ss_pred heEEeec
Confidence 3444544
No 183
>2bgo_A Endo-B1,4-mannanase 5C; carbohydrate binding protein, carbohydrate binding module; NMR {Cellvibrio japonicus} PDB: 2bgp_A
Probab=37.48 E-value=2e+02 Score=24.84 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=55.1
Q ss_pred CCCceEEeecCCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEEeecCCCCcccceeEEEEEEeeCCeEEEEEeeC-
Q 006940 82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHST- 160 (624)
Q Consensus 82 ~~~~~Y~~~~~~~g~y~vRl~F~~~~y~~~~~~~~Fdv~~~~~~~~~v~~~~~~~~~~~~~E~~~~~~~~~l~i~f~~~- 160 (624)
+..-.+++.+.+.|.|-+.+.+.. .|.. ..=.|.+||. -..+. |......+-+-.++..+.++=.|.|...
T Consensus 35 gdsVtf~VdVP~tG~YdLsI~Ya~-~~G~----k~n~L~VNG~-~~~V~--fP~tt~~~~~~~~V~L~aG~NtI~i~~~~ 106 (140)
T 2bgo_A 35 GSAVIWNVDVPVTGEYRINLTWSS-PYSS----KVNTLVMDGT-ALSYA--FAEATVPVTYVQTKTLSAGNHSFGVRVGS 106 (140)
T ss_dssp TCEEEEEECCCSSEEEEEEEEECC-CSSE----EEEEEEETTE-EEEEE--EESCCSCEEEEEEEEECSSCEEEEEECCS
T ss_pred CCEEEEEEecCCCcEEEEEEEecc-CCCC----ceEEEEECCc-eeEEE--ECCcCCcEEEEEEEEecCCccEEEEEecC
Confidence 445577777777899998887742 2322 3348889986 34443 2222222212123456778888888863
Q ss_pred -CCCCCcEeeEEEEEcCCcc
Q 006940 161 -GHGDPAILSLEILQVDDKA 179 (624)
Q Consensus 161 -~~~~pfIsaIEl~~l~~~~ 179 (624)
.-|.-+|-+|+|.+.+...
T Consensus 107 g~WG~~~iD~I~l~~a~~~~ 126 (140)
T 2bgo_A 107 SDWGYMNVHSLKLELLGGLT 126 (140)
T ss_dssp SSCCCCEEEEEEEEECC---
T ss_pred CCceeEEEEEEEEEcCCCcc
Confidence 2477899999999877643
No 184
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=33.52 E-value=33 Score=21.88 Aligned_cols=8 Identities=25% Similarity=1.232 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 006940 567 MVWWKRRQ 574 (624)
Q Consensus 567 ~~~~~~r~ 574 (624)
+.+||-||
T Consensus 27 flywrgrr 34 (40)
T 2l9u_A 27 FLYWRGRR 34 (40)
T ss_dssp HHHHHHHH
T ss_pred eEEEcccc
Confidence 44444443
No 185
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.52 E-value=23 Score=27.59 Aligned_cols=19 Identities=21% Similarity=0.495 Sum_probs=7.6
Q ss_pred EhhhHHHHHHHHHHHHHHH
Q 006940 551 IGFGVLGLIFLLIICSMVW 569 (624)
Q Consensus 551 i~~~~~~~~~~~~~~~~~~ 569 (624)
+++++++++++++++++++
T Consensus 13 Iv~gvi~gilliGllllli 31 (79)
T 2knc_B 13 VLLSVMGAILLIGLAALLI 31 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 186
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.22 E-value=60 Score=25.23 Aligned_cols=30 Identities=13% Similarity=-0.076 Sum_probs=15.2
Q ss_pred CCCCCCCCceEEEEhhhHHHHHHHHHHHHH
Q 006940 538 ACGPHLSTSAKIGIGFGVLGLIFLLIICSM 567 (624)
Q Consensus 538 ~c~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 567 (624)
.|....+...+++.++++++++-+++++++
T Consensus 3 ~Cp~~~n~~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 3 MGSKGPDILVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp SSCSSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 365555566665555555554443333333
No 187
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=27.15 E-value=29 Score=23.76 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=21.9
Q ss_pred EEEhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q 006940 549 IGIGFGVLGLIFLLIICSMVWWKRRQNILR 578 (624)
Q Consensus 549 ~~i~~~~~~~~~~~~~~~~~~~~~r~~~~~ 578 (624)
..|+++++..+++++++.+.++...|++..
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 345666666788888888888888887653
No 188
>2y7l_A NT_ALS9-2, agglutinin-like ALS9 protein; cell adhesion, adhesin, peptide binding protein; 1.49A {Candida albicans} PDB: 2y7m_A 2y7n_A 2y7o_A 2ylh_A
Probab=22.74 E-value=84 Score=31.12 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=48.2
Q ss_pred EEeecCCCCcccceeEEEEEEeeCCeEEEEEeeCCCCC-CcEeeEEEEEcCCcccccCCCCccceeEEEEEeecCCCCCC
Q 006940 127 YSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGD-PAILSLEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKP 205 (624)
Q Consensus 127 ~~v~~~~~~~~~~~~~E~~~~~~~~~l~i~f~~~~~~~-pfIsaIEl~~l~~~~y~~~~~~~~~~~l~~~~Rin~Gg~~~ 205 (624)
..-+++|.....+.--.+-+.-.++.+.|+|.+.+.|+ |||++++..+.. ..+ .+....+.-|.+...
T Consensus 218 tn~~NdW~~P~~~~sfs~t~tCss~~i~It~~niPaGYRpfvdal~~~~~~-~~~----------~~~y~~~YtC~~~~~ 286 (312)
T 2y7l_A 218 SKGLNDWNFPVSSESFSYTKTCTSTSITVEFQNVPAGYRPFVDAYISAENI-DKY----------TLTYANEYTCENGNT 286 (312)
T ss_dssp EESBCTTSCBSCCBCCCEEEEECSSEEEEEECCBCTTEEEEEEEEEEESST-TEE----------EEEECCEEEETTSCE
T ss_pred hcccccccCcccccCcccccEEcCCEEEEEEccCCCCceEEEEEEEecCCC-ceE----------EEEEEEEEEECCCce
Confidence 34455665443333333445668899999998877776 999999755332 111 223334445765432
Q ss_pred CCCCCCCCCCCCCCCcccCCC
Q 006940 206 KFDVDYSGDHWGGDRFWNPIL 226 (624)
Q Consensus 206 ~~~~~~~~D~~~~dR~W~~~~ 226 (624)
-++++ .+.|.++.
T Consensus 287 ------~~~~~--~~~w~~y~ 299 (312)
T 2y7l_A 287 ------VVDPF--TLTWWGYK 299 (312)
T ss_dssp ------EECCE--EEEEECCC
T ss_pred ------eecce--eEEecccc
Confidence 24444 78898775
Done!