BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006941
(624 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
pdb|2YPD|B Chain B, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
Length = 392
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 88/140 (62%), Gaps = 7/140 (5%)
Query: 474 GAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQ-----QVFYLSSEHKAKLKQEYGIE 528
GA+W I+ +D+ K++++L+K +E + + P Q +Y++ + + +L +EYG+
Sbjct: 233 GALWHIYAGKDVDKIREFLQKISKE-QGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVR 291
Query: 529 PWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRA 588
T IQ LG+A+ +PAG HQV+N SCI+ DFVSPE++ + LT+E RLL
Sbjct: 292 TCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRLLKEEINY 351
Query: 589 KEDKLEVKKMILYAVSQAVK 608
+DKL+VK ++ +AV + V+
Sbjct: 352 -DDKLQVKNILYHAVKEMVR 370
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 15/181 (8%)
Query: 177 KHFQWHWAKGEPVIVSNVLENALGLSWDPMVMWRA-CRQISNTKHRLYLDVKAIDCLDWC 235
K F+ W +G+P +VS V + +S +W+A + H+ L ++C D
Sbjct: 25 KLFKECWKQGQPAVVSGV-HKKMNIS-----LWKAESISLDFGDHQADL----LNCKDSI 74
Query: 236 EGEVNIHQFFKGY---TDGRFDKESWPQILKLKDWPPSNLFEERLPRHNVEFLGCLPFKE 292
N+ +F+ G+ + + +K +LKLKDWP F+ +P + L LP E
Sbjct: 75 ISNANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPE 134
Query: 293 YTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTH 352
Y +P G N+A+ LP ++PD+GP+ AYGV T LH ++SD VN+L +
Sbjct: 135 YCNP-EGKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVY 193
Query: 353 T 353
Sbjct: 194 V 194
>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|A Chain A, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 334
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPEN 568
+P +QK GE VFVP G H V NL + I +F S N
Sbjct: 252 FKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTN 293
>pdb|3K2O|A Chain A, Structure Of An Oxygenase
pdb|3K2O|B Chain B, Structure Of An Oxygenase
Length = 336
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPEN 568
+P +QK GE VFVP G H V NL + I +F S N
Sbjct: 253 FKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTN 294
>pdb|3NGW|A Chain A, Crystal Structure Of Molybdopterin-Guanine Dinucleotide
Biosynthesis Protein A From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr189
Length = 208
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 506 PVQQVFYLSSEHKA-KLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALD-- 562
P Q VF E +A KL Y E FI L + V AG +R+ SC+ AA+D
Sbjct: 38 PFQTVFVCRDEKQAEKLSSRYEAE---FIWDLHKGVGSIAGIHAALRHFGSCVVAAIDXP 94
Query: 563 FVSPE 567
FV PE
Sbjct: 95 FVKPE 99
>pdb|1IKP|A Chain A, Pseudomonas Aeruginosa Exotoxin A, P201q, W281a Mutant
Length = 613
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 66 REKPISDWKANENGSILCPSIELGGCGNVL-ELRCTFDENWVAELLRKAEEIAKAHNLED 124
REK S+W +G +LC +L G N L + RC D+ W ++ R H+L+
Sbjct: 183 REKRWSEWA---SGKVLCLLDQLDGVYNYLAQQRCNLDDTWEGKIYRVLAGNPAKHDLDI 239
Query: 125 TP 126
P
Sbjct: 240 KP 241
>pdb|1IKQ|A Chain A, Pseudomonas Aeruginosa Exotoxin A, Wild Type
Length = 613
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 66 REKPISDWKANENGSILCPSIELGGCGNVL-ELRCTFDENWVAELLRKAEEIAKAHNLED 124
REK S+W +G +LC L G N L + RC D+ W ++ R H+L+
Sbjct: 183 REKRWSEWA---SGKVLCLLDPLDGVYNYLAQQRCNLDDTWEGKIYRVLAGNPAKHDLDI 239
Query: 125 TP 126
P
Sbjct: 240 KP 241
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 308 PKKSLKPDMGPKTYIAYGVAQELGRA--DSVTKLHCDMSDAVNV------LTHTTDVKLK 359
P+K+L+PDMG T + + +++GR V + C + D V V + D K +
Sbjct: 18 PQKALRPDMGYNTLANFRIEKKIGRGQFSEVYRAAC-LLDGVPVALKKVQIFDLMDAKAR 76
Query: 360 PEHLAKIEKLKQ 371
+ + +I+ LKQ
Sbjct: 77 ADCIKEIDLLKQ 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,911,264
Number of Sequences: 62578
Number of extensions: 794546
Number of successful extensions: 1729
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1721
Number of HSP's gapped (non-prelim): 9
length of query: 624
length of database: 14,973,337
effective HSP length: 105
effective length of query: 519
effective length of database: 8,402,647
effective search space: 4360973793
effective search space used: 4360973793
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)