Query 006941
Match_columns 624
No_of_seqs 150 out of 205
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 16:41:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1356 Putative transcription 100.0 1E-153 2E-158 1274.7 25.9 475 35-615 404-884 (889)
2 PF02373 JmjC: JmjC domain, hy 99.5 1.7E-14 3.7E-19 126.7 4.7 86 472-563 29-114 (114)
3 PF13621 Cupin_8: Cupin-like d 99.1 8.6E-12 1.9E-16 122.1 -0.7 40 528-567 207-249 (251)
4 smart00558 JmjC A domain famil 97.0 0.00032 6.9E-09 55.9 1.6 54 283-354 3-56 (57)
5 KOG2131 Uncharacterized conser 96.2 0.0035 7.5E-08 67.8 3.4 93 472-582 228-321 (427)
6 KOG2130 Phosphatidylserine-spe 93.4 0.035 7.6E-07 59.4 1.4 43 528-570 261-303 (407)
7 PF07883 Cupin_2: Cupin domain 93.0 0.06 1.3E-06 43.3 1.9 25 531-555 38-62 (71)
8 COG0662 {ManC} Mannose-6-phosp 91.1 0.1 2.2E-06 48.3 1.3 42 529-570 74-115 (127)
9 TIGR03214 ura-cupin putative a 89.6 0.17 3.7E-06 52.5 1.7 30 525-554 213-242 (260)
10 PRK09943 DNA-binding transcrip 84.0 0.45 9.8E-06 46.3 1.0 43 525-567 141-183 (185)
11 COG4101 Predicted mannose-6-ph 81.8 1 2.2E-05 42.6 2.4 25 531-555 89-113 (142)
12 TIGR00218 manA mannose-6-phosp 81.8 0.72 1.6E-05 48.7 1.6 15 535-549 156-170 (302)
13 PRK15131 mannose-6-phosphate i 80.7 0.83 1.8E-05 50.4 1.6 18 532-549 239-256 (389)
14 COG1917 Uncharacterized conser 79.0 0.69 1.5E-05 42.3 0.3 49 503-556 59-108 (131)
15 PF01050 MannoseP_isomer: Mann 78.9 1.5 3.2E-05 42.5 2.5 23 534-556 106-128 (151)
16 PRK04190 glucose-6-phosphate i 78.1 1.6 3.5E-05 43.8 2.6 29 528-556 118-146 (191)
17 PRK13290 ectC L-ectoine syntha 75.9 1.8 4E-05 40.5 2.2 37 529-567 74-110 (125)
18 PLN02288 mannose-6-phosphate i 73.2 1.7 3.8E-05 48.1 1.5 17 533-549 254-270 (394)
19 COG1482 ManA Phosphomannose is 68.8 3.1 6.7E-05 44.9 2.1 19 532-550 160-178 (312)
20 PRK15460 cpsB mannose-1-phosph 67.7 2.9 6.4E-05 47.4 1.8 29 527-555 421-449 (478)
21 PF08007 Cupin_4: Cupin superf 65.5 3.6 7.8E-05 43.9 1.9 41 530-570 176-216 (319)
22 TIGR03214 ura-cupin putative a 63.0 5.3 0.00011 41.6 2.5 29 527-555 95-123 (260)
23 PF02041 Auxin_BP: Auxin bindi 61.1 4.7 0.0001 39.6 1.6 41 509-554 75-115 (167)
24 PF00190 Cupin_1: Cupin; Inte 61.1 3.6 7.8E-05 38.5 0.8 34 531-564 81-120 (144)
25 TIGR01479 GMP_PMI mannose-1-ph 59.8 6.2 0.00013 44.3 2.5 27 529-555 414-440 (468)
26 smart00835 Cupin_1 Cupin. This 58.4 8 0.00017 36.2 2.6 27 528-554 73-99 (146)
27 TIGR03404 bicupin_oxalic bicup 56.4 7.6 0.00017 42.6 2.4 55 529-584 288-342 (367)
28 PF01238 PMI_typeI: Phosphoman 52.6 5 0.00011 43.9 0.3 18 532-549 252-269 (373)
29 KOG2508 Predicted phospholipas 51.2 22 0.00048 39.4 4.8 50 165-214 20-74 (437)
30 PF02938 GAD: GAD domain; Int 51.1 5.8 0.00013 35.1 0.4 34 512-552 60-93 (95)
31 KOG2107 Uncharacterized conser 50.3 13 0.00027 37.2 2.6 56 486-550 80-136 (179)
32 KOG2583 Ubiquinol cytochrome c 49.7 12 0.00026 41.8 2.6 47 145-192 157-206 (429)
33 PRK11171 hypothetical protein; 44.1 16 0.00036 38.1 2.5 27 528-554 99-125 (266)
34 PRK11171 hypothetical protein; 42.6 14 0.00031 38.5 1.8 30 525-554 218-247 (266)
35 PRK10371 DNA-binding transcrip 41.7 16 0.00036 38.3 2.1 33 524-556 58-90 (302)
36 KOG3905 Dynein light intermedi 39.0 13 0.00029 40.9 0.9 70 478-547 242-313 (473)
37 TIGR03037 anthran_nbaC 3-hydro 39.0 13 0.00028 36.7 0.7 46 528-573 68-113 (159)
38 PRK13264 3-hydroxyanthranilate 38.5 13 0.00028 37.3 0.7 45 528-572 74-118 (177)
39 PRK15457 ethanolamine utilizat 31.9 26 0.00056 36.7 1.6 28 525-552 188-215 (233)
40 TIGR03404 bicupin_oxalic bicup 30.7 36 0.00078 37.5 2.6 28 528-555 108-135 (367)
41 PF08990 Docking: Erythronolid 30.1 33 0.00073 24.5 1.4 17 484-500 3-19 (27)
42 PRK13501 transcriptional activ 30.1 28 0.00062 35.8 1.6 28 525-552 51-78 (290)
43 TIGR02297 HpaA 4-hydroxyphenyl 28.6 36 0.00078 34.7 2.0 30 525-554 57-86 (287)
44 PF12852 Cupin_6: Cupin 28.2 44 0.00096 32.3 2.5 23 532-554 57-79 (186)
45 PRK13305 sgbH 3-keto-L-gulonat 27.6 24 0.00053 36.1 0.6 47 557-613 6-53 (218)
46 PF06249 EutQ: Ethanolamine ut 27.1 46 0.001 32.7 2.4 20 527-546 110-129 (152)
47 PF02311 AraC_binding: AraC-li 27.0 40 0.00087 29.2 1.8 45 526-571 37-83 (136)
48 PF05899 Cupin_3: Protein of u 26.2 50 0.0011 27.9 2.2 17 531-547 45-61 (74)
49 PF03079 ARD: ARD/ARD' family; 25.3 33 0.00072 33.6 1.0 65 478-550 66-135 (157)
50 KOG4822 Predicted nuclear memb 24.8 32 0.0007 43.1 1.0 55 33-87 275-342 (1906)
51 PF05947 DUF879: Bacterial pro 24.7 58 0.0013 38.0 3.0 65 490-554 10-116 (602)
52 PRK13502 transcriptional activ 24.0 57 0.0012 33.2 2.5 28 525-552 51-78 (282)
53 TIGR03359 VI_chp_6 type VI sec 23.1 85 0.0018 36.7 3.9 64 490-553 10-115 (598)
54 PRK13503 transcriptional activ 22.2 27 0.00057 35.3 -0.3 31 525-555 48-78 (278)
55 PF14816 FAM178: Family of unk 22.2 50 0.0011 36.8 1.8 29 512-541 62-91 (377)
56 PRK10296 DNA-binding transcrip 21.6 61 0.0013 33.0 2.1 26 525-550 56-81 (278)
57 TIGR00218 manA mannose-6-phosp 21.3 74 0.0016 33.8 2.7 22 530-551 271-293 (302)
58 PRK01191 rpl24p 50S ribosomal 20.1 66 0.0014 30.6 1.8 34 511-546 25-58 (120)
No 1
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=100.00 E-value=1.1e-153 Score=1274.71 Aligned_cols=475 Identities=41% Similarity=0.647 Sum_probs=419.5
Q ss_pred cccCCCccCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCCCCCC-ceecccCCCchhHHHHHHHH
Q 006941 35 VDSTPETDSKFDTTPGTDSKVGSNPEKDSKGREKPISDWKANENGSILCPSIELGGCGN-VLELRCTFDENWVAELLRKA 113 (624)
Q Consensus 35 ~~~~~~~~~g~~y~~g~~~~~~~~~~~~~~~~~~~~~~W~a~~dGsI~Cpp~e~ggCg~-~L~L~~if~~~wi~~L~~~a 113 (624)
...+.|.+||.+|+||-++...++. +.....+.+ +|++|+|.|-|...+||+. .|+|+|++|..|.+.|+.+|
T Consensus 404 e~~~~~~~r~~~~~~g~~~~~~~~~---s~~~~~~~~---~~~ng~~r~l~~~~~g~~~~~l~lkr~lpn~~~s~i~~~v 477 (889)
T KOG1356|consen 404 ECELMLRSRGVKYEHGPDPIEPSLS---SVSVDEPSS---ANENGSLRDLLLSLAGCLDRGLKLKRILPNILDSIIASVV 477 (889)
T ss_pred hHHHHHHHHHHHhhcCccccccccC---CCCCCCCcc---cccccchhhcccccCccchhhhhhhhcCchHHHHHHHHHH
Confidence 3457799999999999876653332 222222222 9999999999999999999 99999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCccccccCCCCCCccCCchhhhhhhcCCCCCCCceecCCCCCcCCCChHHHHHHHhcCCCEEEEe
Q 006941 114 EEIAKAHNLEDTPESSERVCTCYNPLGEIDMTNSELIKAASREDSTDNYLYNPAAKDIRHGDLKHFQWHWAKGEPVIVSN 193 (624)
Q Consensus 114 ee~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~r~aA~Re~s~dn~LycP~~~d~~~~~l~hFQ~hW~kGePVIVr~ 193 (624)
|.-+..+-+.- ....|. ..+...+.++++|.|+.+.|||||||.+.+.+.+|+.|||+||++||||||||
T Consensus 478 E~k~~~~~~~~----~l~~~~------~~~~~~~~~~s~~~~~~~cdn~Ll~l~~d~~~~~n~~~FQEhWkqGqPViVs~ 547 (889)
T KOG1356|consen 478 ENKLTSKLSKP----PLRLCR------SSQDGSGLLLSAASHSWLCDNRLLSLKVDPLNQNNLKHFQEHWKQGQPVIVSG 547 (889)
T ss_pred HhhcccccCCc----hhhcCc------cccccccCccccCCCCcCCCCceecCccCccchhHHHHHHHHHhcCCcEEehH
Confidence 99887743333 333342 12346778899999999999999999998888899999999999999999999
Q ss_pred ccccccCCCCChhHHHHHHHHhhccc-cccccceeeeecCCCceeecchhhhhccccCCccCCCCCcceeecCCCCChhh
Q 006941 194 VLENALGLSWDPMVMWRACRQISNTK-HRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGRFDKESWPQILKLKDWPPSNL 272 (624)
Q Consensus 194 Vl~~~s~lsWeP~~mwra~~e~~~~~-~~~~~~vkaiDCld~~evei~i~qFf~Gy~~gR~~~~gwp~mLKLKDWPps~~ 272 (624)
|++++++++|+||+|||+|+++.+.. +..+.++.++||++ ++.+||.||++|+++++|||+|||||||||+++
T Consensus 548 V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~vLKLKDWpp~~~ 621 (889)
T KOG1356|consen 548 VHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENGWPEVLKLKDWPPGED 621 (889)
T ss_pred hhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccCCeeEEeecCCCchHh
Confidence 99999999999999999999987665 66667788899988 789999999999999999999999999999999
Q ss_pred HHHhcchhhHHhhhCCCCcCccCCCCCcccccccCCCCCCCCCCCCceeeccccccccCCCCCcccccccccchhhhhhc
Q 006941 273 FEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTH 352 (624)
Q Consensus 273 F~e~LP~h~~eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YIAYG~~eElGrGDSvTkLH~DmSDAVNIL~h 352 (624)
|+++||+||+|||++|||||||| |.|.||||++||.++++||||||||||||+++|+||||||||||||||||||||||
T Consensus 622 Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~dvSDaVNILvy 700 (889)
T KOG1356|consen 622 FKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLDVSDAVNILVY 700 (889)
T ss_pred HhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCceeeceehhhhhhheee
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhHHHHHHHHHHHHHhhhhhhhhcCCCCCCccccCCCCCCccccccCCCCCCCCCCCcccCCCccccccCCCC
Q 006941 353 TTDVKLKPEHLAKIEKLKQQHKAQDQMEFFGCSQFSDENSHANSSAIPVKNEQCGGKPDDGDGVGVVPQDSQICDSMLND 432 (624)
Q Consensus 353 taev~~~~~~~~~i~kLk~~~~~qd~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~~~~~ 432 (624)
|++++. +...|+++++++.++++.|+...
T Consensus 701 v~e~~~---~~~~~~~~~k~~~~~~~de~~~~------------------------------------------------ 729 (889)
T KOG1356|consen 701 VGEPPG---QIEQIAKVLKKIQEGDLDEITRS------------------------------------------------ 729 (889)
T ss_pred eccCCc---hHHhHHHHHHhhhhcchhhhhhh------------------------------------------------
Confidence 999876 45556667666655443322111
Q ss_pred CccccchhhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCceeeeeeCCCChHHHHHHHHHHHhhhcC----cCCCCCc
Q 006941 433 PIPVQRAISEEASEAIADLGKSRESGEPSNIPENEFESADGGAVWDIFRRQDISKLQDYLKKHFREFRH----IHCCPVQ 508 (624)
Q Consensus 433 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFRreDvpKLreyL~kh~~Ef~h----~~~~Pv~ 508 (624)
+. .+..+.+|||||||||||||||||||+||++||+| .|++.+|
T Consensus 730 --------------~~------------------~~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhD 777 (889)
T KOG1356|consen 730 --------------RI------------------SSVSETPGALWHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHD 777 (889)
T ss_pred --------------hc------------------cccccCCcchhhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcc
Confidence 00 01236899999999999999999999999999999 4544458
Q ss_pred cceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHHHHHHhhcCCCcccC
Q 006941 509 QVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRA 588 (624)
Q Consensus 509 Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~a 588 (624)
|+||||++||+|||||||||||||+|+||||||||||||||||||+||||||+||||||||.||+|||+|||+||++|.+
T Consensus 778 QS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~h~~ 857 (889)
T KOG1356|consen 778 QSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQNHKN 857 (889)
T ss_pred cceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHhCCCCC
Q 006941 589 KEDKLEVKKMILYAVSQAVKDISDPGA 615 (624)
Q Consensus 589 keDKLeVKkm~l~A~~~Av~~l~~~~~ 615 (624)
||||||||||+||||++||++|+...+
T Consensus 858 ~eDKLqvK~mi~hAVk~Av~~L~~~~s 884 (889)
T KOG1356|consen 858 HEDKLQVKNMIYHAVKDAVGTLKEAES 884 (889)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999997655
No 2
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.49 E-value=1.7e-14 Score=126.67 Aligned_cols=86 Identities=33% Similarity=0.556 Sum_probs=62.6
Q ss_pred CCceeeeeeCCCChHHHHHHHHHHHhhhcCcCCCCCccceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCccccc
Q 006941 472 DGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVR 551 (624)
Q Consensus 472 ~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~Pv~Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVR 551 (624)
.+..+|-+++++|.+|++++++++... +.....-.+...+.++. ..+.||+.|+|+|++||+||||+|++|||.
T Consensus 29 g~~k~W~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~----l~~~gi~~~~~~Q~~Ge~V~i~pg~~H~v~ 102 (114)
T PF02373_consen 29 GGSKVWYIVPPEDADKFEKFLRSKESQ--NCPQFLDHKNIFVSPEQ----LKKAGIPVYRFVQKPGEFVFIPPGAYHQVF 102 (114)
T ss_dssp ESEEEEEEE-GGGHHHHHHHHHHHHHH--HSTTGGCTGGEEEGHHH----HHHTTS--EEEEEETT-EEEE-TT-EEEEE
T ss_pred CcceEeEEechhhhhhHHHHHhhcccc--cccccccccccccceee----eeccCcccccceECCCCEEEECCCceEEEE
Confidence 467899999999999999999997211 11101113344444444 667999999999999999999999999999
Q ss_pred cchhhHhhhhcc
Q 006941 552 NLKSCIKAALDF 563 (624)
Q Consensus 552 NLkSCIKVAlDF 563 (624)
|+-.||++|.+|
T Consensus 103 n~g~~i~~a~Nf 114 (114)
T PF02373_consen 103 NLGDNISEAVNF 114 (114)
T ss_dssp ESSSEEEEEEEE
T ss_pred eCCceEEEEecC
Confidence 999999999988
No 3
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=99.11 E-value=8.6e-12 Score=122.11 Aligned_cols=40 Identities=33% Similarity=0.598 Sum_probs=32.9
Q ss_pred cceEEEeecCCeEEecCCCccccccc--hh-hHhhhhcccCcc
Q 006941 528 EPWTFIQKLGEAVFVPAGCPHQVRNL--KS-CIKAALDFVSPE 567 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAGCPHQVRNL--kS-CIKVAlDFVSPE 567 (624)
.+|++++.+||++|||+|-.|||+|| .. ||.|...|..+.
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecccc
Confidence 89999999999999999999999999 76 999998888764
No 4
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=97.00 E-value=0.00032 Score=55.87 Aligned_cols=54 Identities=43% Similarity=0.629 Sum_probs=42.7
Q ss_pred HhhhCCCCcCccCCCCCcccccccCCCCCCCCCCCCceeeccccccccCCCCCcccccccccchhhhhhccc
Q 006941 283 EFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTHTT 354 (624)
Q Consensus 283 eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YIAYG~~eElGrGDSvTkLH~DmSDAVNIL~hta 354 (624)
..+..||+ .+||+.+++.....|+. .|+.+|.. +|+|.+|+|..|.+|++.+.+
T Consensus 3 ~~l~~lP~---------~~~ll~~~~~~~~~~~~---~~~~~G~~------~s~t~~H~d~~~~~n~~~~~~ 56 (57)
T smart00558 3 NNLAKLPF---------KLNLLSDLPEDILGPDV---PYLYMGMA------GSVTPWHIDDYDLVNYLHQGA 56 (57)
T ss_pred chhhhCCC---------cchHHHHCCcccCCCCc---ceEEEeCC------CCccceeEcCCCeEEEEEecC
Confidence 34566776 78999999988888877 56666643 789999999999999887653
No 5
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.21 E-value=0.0035 Score=67.80 Aligned_cols=93 Identities=25% Similarity=0.359 Sum_probs=67.9
Q ss_pred CCceeeeeeCCCChHHHHHHHHHHHhhhcCcCCCCCccceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCccccc
Q 006941 472 DGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVR 551 (624)
Q Consensus 472 ~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~Pv~Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVR 551 (624)
.|-.-|=+|.+++..+|++-+ .+-|+.-.. .--.++.+.+.++.|.+||+||+|.|==|||-
T Consensus 228 cG~KrWl~~pP~qe~~l~dr~----------gnlp~~~~~--------~~ld~~~~~~lei~Qepge~VFvPsGW~hQV~ 289 (427)
T KOG2131|consen 228 CGRKRWLLYPPEQEQTLADRY----------GNLPLPSWI--------TKLDLFRGPLLEIFQEPGETVFVPSGWHHQVL 289 (427)
T ss_pred ecceeEEEeChHHhhhhhhhc----------cCcCCcccc--------ccccccccchhhhhccCCceeeccCccccccc
Confidence 456789999999999997521 223432211 11234566668999999999999999999999
Q ss_pred cchhhHhhhhcccCccchHHHHH-HHHHhhcC
Q 006941 552 NLKSCIKAALDFVSPENVSQCVR-LTEEFRLL 582 (624)
Q Consensus 552 NLkSCIKVAlDFVSPEnV~ec~r-LteEfR~L 582 (624)
||-..|.|--.++--=|+..=.+ |-+++-.+
T Consensus 290 NL~dTISINHNW~N~~nl~~~w~~Lk~~y~a~ 321 (427)
T KOG2131|consen 290 NLGDTISINHNWCNATNLAWMWDALKEDYPAL 321 (427)
T ss_pred cccceeeecccccccccHHHHHHHHHhhhhhh
Confidence 99999999999988888776555 33344433
No 6
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=93.38 E-value=0.035 Score=59.43 Aligned_cols=43 Identities=42% Similarity=0.619 Sum_probs=40.7
Q ss_pred cceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchH
Q 006941 528 EPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVS 570 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 570 (624)
+|=...|++||.||||.|-=|=|-||.-.|.|+..|+|=||.+
T Consensus 261 kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 261 KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 5777899999999999999999999999999999999999975
No 7
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=93.01 E-value=0.06 Score=43.30 Aligned_cols=25 Identities=44% Similarity=0.791 Sum_probs=22.1
Q ss_pred EEEeecCCeEEecCCCccccccchh
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
++.=..||+++||||++|+++|..+
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~ 62 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGD 62 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESS
T ss_pred EeEccCCEEEEECCCCeEEEEECCC
Confidence 5666789999999999999999865
No 8
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=91.10 E-value=0.1 Score=48.27 Aligned_cols=42 Identities=31% Similarity=0.493 Sum_probs=30.5
Q ss_pred ceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchH
Q 006941 529 PWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVS 570 (624)
Q Consensus 529 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 570 (624)
.=.++=+.||+|+||||.||.++|.-++-=+.++=-+|+..+
T Consensus 74 ~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~~~~ 115 (127)
T COG0662 74 GEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPYLG 115 (127)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCCcCC
Confidence 557788899999999999999999988333333333454443
No 9
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=89.62 E-value=0.17 Score=52.49 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=24.0
Q ss_pred hCCcceEEEeecCCeEEecCCCccccccch
Q 006941 525 YGIEPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 525 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
|.+..=...=..||+|||||||||+..|.=
T Consensus 213 ~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G 242 (260)
T TIGR03214 213 YNLDNNWVPVEAGDYIWMGAYCPQACYAGG 242 (260)
T ss_pred EEECCEEEEecCCCEEEECCCCCEEEEecC
Confidence 344555566678999999999999999963
No 10
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=84.00 E-value=0.45 Score=46.33 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=34.9
Q ss_pred hCCcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCcc
Q 006941 525 YGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 567 (624)
Q Consensus 525 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 567 (624)
+-|..=++.-..||.++||||.||..+|..++--+++-+++|-
T Consensus 141 ~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p~ 183 (185)
T PRK09943 141 LTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPT 183 (185)
T ss_pred EEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCCC
Confidence 3456677888999999999999999999877766666677764
No 11
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=81.84 E-value=1 Score=42.61 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.5
Q ss_pred EEEeecCCeEEecCCCccccccchh
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
+.+-.+||...||+|.|||--||.+
T Consensus 89 ha~~~pGDf~YiPpgVPHqp~N~S~ 113 (142)
T COG4101 89 HAEVGPGDFFYIPPGVPHQPANLST 113 (142)
T ss_pred eEEecCCCeEEcCCCCCCcccccCC
Confidence 5677899999999999999999974
No 12
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=81.81 E-value=0.72 Score=48.70 Aligned_cols=15 Identities=47% Similarity=0.992 Sum_probs=13.8
Q ss_pred ecCCeEEecCCCccc
Q 006941 535 KLGEAVFVPAGCPHQ 549 (624)
Q Consensus 535 ~lGEAVFIPAGCPHQ 549 (624)
+.||+||||||.||=
T Consensus 156 ~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 156 KPGDFFYVPSGTPHA 170 (302)
T ss_pred CCCCEEEeCCCCccc
Confidence 579999999999995
No 13
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=80.69 E-value=0.83 Score=50.39 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=15.6
Q ss_pred EEeecCCeEEecCCCccc
Q 006941 532 FIQKLGEAVFVPAGCPHQ 549 (624)
Q Consensus 532 f~Q~lGEAVFIPAGCPHQ 549 (624)
+.=++|||+|||||.||=
T Consensus 239 v~l~pGeaifipAg~~HA 256 (389)
T PRK15131 239 VKLNPGEAMFLFAETPHA 256 (389)
T ss_pred EEeCCCCEEEeCCCCCeE
Confidence 445689999999999996
No 14
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=79.01 E-value=0.69 Score=42.34 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=35.1
Q ss_pred CCCC-CccceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCccccccchhh
Q 006941 503 HCCP-VQQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSC 556 (624)
Q Consensus 503 ~~~P-v~Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSC 556 (624)
|..| .+|.+|..+-.- +|.++.=+++=+.||.|+||||.+|-+.|..+.
T Consensus 59 H~hp~~~~~~~Vl~G~~-----~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 59 HTHPLGEQTIYVLEGEG-----TVQLEGEKKELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred ccCCCcceEEEEEecEE-----EEEecCCceEecCCCEEEECCCCeeeeccCCCC
Confidence 3345 457666654432 134445556668899999999999999999998
No 15
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=78.90 E-value=1.5 Score=42.48 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=19.7
Q ss_pred eecCCeEEecCCCccccccchhh
Q 006941 534 QKLGEAVFVPAGCPHQVRNLKSC 556 (624)
Q Consensus 534 Q~lGEAVFIPAGCPHQVRNLkSC 556 (624)
=..||.|+||+|+.|++.|.-+.
T Consensus 106 ~~~g~sv~Ip~g~~H~i~n~g~~ 128 (151)
T PF01050_consen 106 LKEGDSVYIPRGAKHRIENPGKT 128 (151)
T ss_pred EcCCCEEEECCCCEEEEECCCCc
Confidence 36799999999999999997543
No 16
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=78.11 E-value=1.6 Score=43.81 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=25.8
Q ss_pred cceEEEeecCCeEEecCCCccccccchhh
Q 006941 528 EPWTFIQKLGEAVFVPAGCPHQVRNLKSC 556 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSC 556 (624)
+.+.+.-..||+|+||+|..|++.|.-+.
T Consensus 118 ~~~~~~v~pGd~v~IPpg~~H~~iN~G~e 146 (191)
T PRK04190 118 EARWIEMEPGTVVYVPPYWAHRSVNTGDE 146 (191)
T ss_pred cEEEEEECCCCEEEECCCCcEEeEECCCC
Confidence 37889999999999999999999997643
No 17
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=75.93 E-value=1.8 Score=40.46 Aligned_cols=37 Identities=11% Similarity=-0.009 Sum_probs=26.7
Q ss_pred ceEEEeecCCeEEecCCCccccccchhhHhhhhcccCcc
Q 006941 529 PWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 567 (624)
Q Consensus 529 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 567 (624)
.=++.=..||+++||||-||+.+|...|.=++ -++|.
T Consensus 74 g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~--v~tP~ 110 (125)
T PRK13290 74 GEVHPIRPGTMYALDKHDRHYLRAGEDMRLVC--VFNPP 110 (125)
T ss_pred CEEEEeCCCeEEEECCCCcEEEEcCCCEEEEE--EECCC
Confidence 34566678999999999999999985443322 25553
No 18
>PLN02288 mannose-6-phosphate isomerase
Probab=73.24 E-value=1.7 Score=48.09 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=14.9
Q ss_pred EeecCCeEEecCCCccc
Q 006941 533 IQKLGEAVFVPAGCPHQ 549 (624)
Q Consensus 533 ~Q~lGEAVFIPAGCPHQ 549 (624)
.=.+|||||||||.||=
T Consensus 254 ~L~PGeaifl~ag~~HA 270 (394)
T PLN02288 254 KLNPGEALYLGANEPHA 270 (394)
T ss_pred ecCCCCEEEecCCCCce
Confidence 34689999999999995
No 19
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=68.80 E-value=3.1 Score=44.92 Aligned_cols=19 Identities=53% Similarity=0.828 Sum_probs=16.6
Q ss_pred EEeecCCeEEecCCCcccc
Q 006941 532 FIQKLGEAVFVPAGCPHQV 550 (624)
Q Consensus 532 f~Q~lGEAVFIPAGCPHQV 550 (624)
+.=++|||+|||||.||=.
T Consensus 160 v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred EecCCCCEEEecCCCceee
Confidence 5668999999999999964
No 20
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=67.71 E-value=2.9 Score=47.35 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.9
Q ss_pred CcceEEEeecCCeEEecCCCccccccchh
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
|..=++.=..||.|+||+|+||+.+|.-.
T Consensus 421 idg~~~~L~~GDSi~ip~g~~H~~~N~g~ 449 (478)
T PRK15460 421 IDGDIKLLGENESIYIPLGATHCLENPGK 449 (478)
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEcCCC
Confidence 44445667899999999999999999854
No 21
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=65.55 E-value=3.6 Score=43.88 Aligned_cols=41 Identities=17% Similarity=0.360 Sum_probs=31.5
Q ss_pred eEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchH
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVS 570 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 570 (624)
..|+=.+||..+||.|++|++.....|+.+++-|..|--..
T Consensus 176 ~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~d 216 (319)
T PF08007_consen 176 EEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWAD 216 (319)
T ss_dssp EEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHH
T ss_pred EEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhh
Confidence 46888999999999999999999999999999999884433
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=63.03 E-value=5.3 Score=41.62 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=25.2
Q ss_pred CcceEEEeecCCeEEecCCCccccccchh
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
+..-+++=..||+++||||+||..+|...
T Consensus 95 ~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 95 AEGETHELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEECCC
Confidence 45667888999999999999999999763
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=61.09 E-value=4.7 Score=39.62 Aligned_cols=41 Identities=29% Similarity=0.433 Sum_probs=24.7
Q ss_pred cceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCccccccch
Q 006941 509 QVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 509 Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
.+.||...+ ++|.-+|=.|.=..+.-.-||.+|+|||.|-.
T Consensus 75 GTl~l~~~~-----~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 75 GTLYLASSH-----EKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp EEEEE--SS-----SSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred eEEEEeccc-----ccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 447887443 37999999999999999999999999999954
No 24
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=61.08 E-value=3.6 Score=38.48 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=24.3
Q ss_pred EEEee----cCCeEEecCCCccccccc--hhhHhhhhccc
Q 006941 531 TFIQK----LGEAVFVPAGCPHQVRNL--KSCIKAALDFV 564 (624)
Q Consensus 531 tf~Q~----lGEAVFIPAGCPHQVRNL--kSCIKVAlDFV 564 (624)
.+.|. .||.++||+|.||=+.|. .+.+.++.=+.
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~ 120 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDT 120 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEE
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEEC
Confidence 45555 999999999999999999 56666554333
No 25
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=59.85 E-value=6.2 Score=44.34 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.3
Q ss_pred ceEEEeecCCeEEecCCCccccccchh
Q 006941 529 PWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 529 pWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
.=++.=+.||.|+||+|.||+.+|.-+
T Consensus 414 g~~~~l~~GDsi~ip~~~~H~~~N~g~ 440 (468)
T TIGR01479 414 DETLLLTENESTYIPLGVIHRLENPGK 440 (468)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCC
Confidence 445667899999999999999999865
No 26
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=58.39 E-value=8 Score=36.24 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.4
Q ss_pred cceEEEeecCCeEEecCCCccccccch
Q 006941 528 EPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
+-+++.-..||+++||+|-+|+..|.-
T Consensus 73 ~~~~~~l~~GD~~~ip~g~~H~~~n~~ 99 (146)
T smart00835 73 KVYDARLREGDVFVVPQGHPHFQVNSG 99 (146)
T ss_pred eEEEEEecCCCEEEECCCCEEEEEcCC
Confidence 567888999999999999999999974
No 27
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=56.36 E-value=7.6 Score=42.60 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=35.7
Q ss_pred ceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHHHHHHhhcCCC
Q 006941 529 PWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPP 584 (624)
Q Consensus 529 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~ 584 (624)
.-++.=..||++|||+|.+|.++|.-+--=+-+-+.+....+.- .|++=+..+|.
T Consensus 288 ~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i-~l~~~l~~~p~ 342 (367)
T TIGR03404 288 ARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADV-SLNQWLALTPP 342 (367)
T ss_pred EEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCcee-EHHHHHhhCCH
Confidence 56778889999999999999999997543333333333332221 25555655653
No 28
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=52.62 E-value=5 Score=43.95 Aligned_cols=18 Identities=50% Similarity=0.861 Sum_probs=14.0
Q ss_pred EEeecCCeEEecCCCccc
Q 006941 532 FIQKLGEAVFVPAGCPHQ 549 (624)
Q Consensus 532 f~Q~lGEAVFIPAGCPHQ 549 (624)
+.=.+|||+|+|||.||-
T Consensus 252 v~L~pGeaifl~a~~~HA 269 (373)
T PF01238_consen 252 VELQPGEAIFLPAGEPHA 269 (373)
T ss_dssp EEE-TT-EEEEHTTHHEE
T ss_pred EEecCCceEEecCCCccc
Confidence 345699999999999997
No 29
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=51.20 E-value=22 Score=39.45 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=37.1
Q ss_pred cCCCCCcCC--CChHHHHHHH-hcCCCEEEEeccccccCC-CCChh-HHHHHHHH
Q 006941 165 NPAAKDIRH--GDLKHFQWHW-AKGEPVIVSNVLENALGL-SWDPM-VMWRACRQ 214 (624)
Q Consensus 165 cP~~~d~~~--~~l~hFQ~hW-~kGePVIVr~Vl~~~s~l-sWeP~-~mwra~~e 214 (624)
-|++.+.-+ -.-.+|-+-| .+..|||+|+.+..=.++ .|.+. ++..+++.
T Consensus 20 vp~~v~~lD~~Ptpl~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd 74 (437)
T KOG2508|consen 20 VPVLVNLLDLTPTPLDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGD 74 (437)
T ss_pred cccccccccCCCchHHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccC
Confidence 355555444 2347888888 789999999999877777 89887 88777765
No 30
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=51.06 E-value=5.8 Score=35.10 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=29.0
Q ss_pred ecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccc
Q 006941 512 YLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRN 552 (624)
Q Consensus 512 YLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRN 552 (624)
||+++.+++|.+.+|.++ ||+||+=||-.+.|++
T Consensus 60 fl~e~~~~~l~~~~~a~~-------GD~ll~~Ag~~~~v~~ 93 (95)
T PF02938_consen 60 FLSEEELKALIERLGAKP-------GDLLLFVAGKKEIVNK 93 (95)
T ss_dssp CCHHHHHHHHHHHTT--T-------TEEEEEEEESHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCC-------CCEEEEECCCHHHHHh
Confidence 499999999999999975 9999999999888765
No 31
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=50.27 E-value=13 Score=37.19 Aligned_cols=56 Identities=23% Similarity=0.498 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhhcCcCCCCCccceecCHHHHHHHHHHhCCcceEEEe-ecCCeEEecCCCcccc
Q 006941 486 SKLQDYLKKHFREFRHIHCCPVQQVFYLSSEHKAKLKQEYGIEPWTFIQ-KLGEAVFVPAGCPHQV 550 (624)
Q Consensus 486 pKLreyL~kh~~Ef~h~~~~Pv~Q~fYLt~ehk~kLkEEyGVEpWtf~Q-~lGEAVFIPAGCPHQV 550 (624)
+||..|...|..++..+. -.++++-|.|.+.+. +-|-=++ .-||-|+||||.=|--
T Consensus 80 eKvk~FfEEhlh~deeiR-~il~GtgYfDVrd~d--------d~WIRi~vekGDlivlPaGiyHRF 136 (179)
T KOG2107|consen 80 EKVKSFFEEHLHEDEEIR-YILEGTGYFDVRDKD--------DQWIRIFVEKGDLIVLPAGIYHRF 136 (179)
T ss_pred HHHHHHHHHhcCchhheE-EEeecceEEeeccCC--------CCEEEEEEecCCEEEecCcceeee
Confidence 688888888876554332 245888898888765 6676554 4699999999999974
No 32
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=49.75 E-value=12 Score=41.85 Aligned_cols=47 Identities=34% Similarity=0.550 Sum_probs=40.7
Q ss_pred CchhhhhhhcCCCCCCCceecCC--CCCcCCCChHHH-HHHHhcCCCEEEE
Q 006941 145 TNSELIKAASREDSTDNYLYNPA--AKDIRHGDLKHF-QWHWAKGEPVIVS 192 (624)
Q Consensus 145 ~~~~~r~aA~Re~s~dn~LycP~--~~d~~~~~l~hF-Q~hW~kGePVIVr 192 (624)
--+++-+||+|. +-.|-||||. ..-+.-.+|.+| ++|..+|.-|+|.
T Consensus 157 a~e~lH~aAfRn-gLgnslY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg 206 (429)
T KOG2583|consen 157 AIEQLHAAAFRN-GLGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVG 206 (429)
T ss_pred HHHHHHHHHHhc-ccCCcccCCcccccCccHHHHHHHHHHHhhccceEEEe
Confidence 356788999999 8899999996 667777999999 6899999999885
No 33
>PRK11171 hypothetical protein; Provisional
Probab=44.13 E-value=16 Score=38.10 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.4
Q ss_pred cceEEEeecCCeEEecCCCccccccch
Q 006941 528 EPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
..=++.=..||.|+||+|.||+.+|.-
T Consensus 99 ~g~~~~L~~GDsi~~p~~~~H~~~N~g 125 (266)
T PRK11171 99 EGKTHALSEGGYAYLPPGSDWTLRNAG 125 (266)
T ss_pred CCEEEEECCCCEEEECCCCCEEEEECC
Confidence 344777889999999999999999975
No 34
>PRK11171 hypothetical protein; Provisional
Probab=42.64 E-value=14 Score=38.53 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=26.8
Q ss_pred hCCcceEEEeecCCeEEecCCCccccccch
Q 006941 525 YGIEPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 525 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
+.+..-++.=..||++++|+++||+.+|.-
T Consensus 218 ~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g 247 (266)
T PRK11171 218 YRLNNDWVEVEAGDFIWMRAYCPQACYAGG 247 (266)
T ss_pred EEECCEEEEeCCCCEEEECCCCCEEEECCC
Confidence 567888888899999999999999999963
No 35
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=41.69 E-value=16 Score=38.33 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=27.8
Q ss_pred HhCCcceEEEeecCCeEEecCCCccccccchhh
Q 006941 524 EYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSC 556 (624)
Q Consensus 524 EyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSC 556 (624)
.|-|.+-++.-..||+||||+|.||+......|
T Consensus 58 ~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~ 90 (302)
T PRK10371 58 EYLINNEKVQINQGHITLFWACTPHQLTDPGNC 90 (302)
T ss_pred EEEECCEEEEEcCCcEEEEecCCcccccccCCC
Confidence 367788899999999999999999997655544
No 36
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=39.04 E-value=13 Score=40.90 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=35.9
Q ss_pred eeeCCCChHHHHHHHHHHHhhhcCcC-CCCCccceecCHHHHHHHHHHhCCcceEEEe-ecCCeEEecCCCc
Q 006941 478 DIFRRQDISKLQDYLKKHFREFRHIH-CCPVQQVFYLSSEHKAKLKQEYGIEPWTFIQ-KLGEAVFVPAGCP 547 (624)
Q Consensus 478 DIFRreDvpKLreyL~kh~~Ef~h~~-~~Pv~Q~fYLt~ehk~kLkEEyGVEpWtf~Q-~lGEAVFIPAGCP 547 (624)
|=||-+-.++|+..|+|-+-.++..- .-.++..=-++.=-|=-...-||.---|=-| -.-||||||||--
T Consensus 242 ~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~~fttpAlVVEkdaVfIPAGWD 313 (473)
T KOG3905|consen 242 HEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGFPFTTPALVVEKDAVFIPAGWD 313 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCcccCCcceEeecceeEeccCCC
Confidence 45777788888888887776544210 0111111001111111122347764443333 2469999999963
No 37
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=39.01 E-value=13 Score=36.73 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=40.3
Q ss_pred cceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHH
Q 006941 528 EPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCV 573 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~ 573 (624)
+..++.=+.||..+||+|.||..+--..||-+.+.=..|++...++
T Consensus 68 ~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~~ 113 (159)
T TIGR03037 68 KREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRPQGELDGF 113 (159)
T ss_pred cEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCCCCCCcce
Confidence 4578889999999999999999888899999999999999877643
No 38
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=38.53 E-value=13 Score=37.27 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=38.8
Q ss_pred cceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHH
Q 006941 528 EPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQC 572 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec 572 (624)
+..++.=+.||..+||+|.||..+.-..||-+.+.=..|+..-.+
T Consensus 74 ~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~~~~~d~ 118 (177)
T PRK13264 74 KRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRPEGELDG 118 (177)
T ss_pred ceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCCCCCccc
Confidence 446889999999999999999998899999998888888866553
No 39
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=31.86 E-value=26 Score=36.66 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=23.7
Q ss_pred hCCcceEEEeecCCeEEecCCCcccccc
Q 006941 525 YGIEPWTFIQKLGEAVFVPAGCPHQVRN 552 (624)
Q Consensus 525 yGVEpWtf~Q~lGEAVFIPAGCPHQVRN 552 (624)
+-|.+=++.=++||.+|||.|++|.-.+
T Consensus 188 l~IdG~t~~l~pGDvlfIPkGs~~hf~t 215 (233)
T PRK15457 188 VRHEGETMIAKAGDVMFIPKGSSIEFGT 215 (233)
T ss_pred EEECCEEEEeCCCcEEEECCCCeEEecC
Confidence 4567889999999999999999977543
No 40
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=30.66 E-value=36 Score=37.47 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=23.6
Q ss_pred cceEEEeecCCeEEecCCCccccccchh
Q 006941 528 EPWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
+-+++.-..||.++||+|.+|-.+|...
T Consensus 108 ~~~~~~L~~GD~~~fP~g~~H~~~n~~~ 135 (367)
T TIGR03404 108 RNYIDDVGAGDLWYFPPGIPHSLQGLDE 135 (367)
T ss_pred cEEEeEECCCCEEEECCCCeEEEEECCC
Confidence 4455568899999999999999999854
No 41
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=30.10 E-value=33 Score=24.55 Aligned_cols=17 Identities=47% Similarity=0.718 Sum_probs=13.6
Q ss_pred ChHHHHHHHHHHHhhhc
Q 006941 484 DISKLQDYLKKHFREFR 500 (624)
Q Consensus 484 DvpKLreyL~kh~~Ef~ 500 (624)
+-+||++||++...|.+
T Consensus 3 ~e~kLr~YLkr~t~eL~ 19 (27)
T PF08990_consen 3 NEDKLRDYLKRVTAELR 19 (27)
T ss_dssp -HCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45799999999988764
No 42
>PRK13501 transcriptional activator RhaR; Provisional
Probab=30.05 E-value=28 Score=35.79 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=24.2
Q ss_pred hCCcceEEEeecCCeEEecCCCcccccc
Q 006941 525 YGIEPWTFIQKLGEAVFVPAGCPHQVRN 552 (624)
Q Consensus 525 yGVEpWtf~Q~lGEAVFIPAGCPHQVRN 552 (624)
+-|++-++.=..||.||||+|.+|+++.
T Consensus 51 ~~i~~~~~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 51 HVLNDHPYRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred EEECCeeeeecCCeEEEEcCCCcccccc
Confidence 5677788888999999999999999764
No 43
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=28.56 E-value=36 Score=34.65 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=23.8
Q ss_pred hCCcceEEEeecCCeEEecCCCccccccch
Q 006941 525 YGIEPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 525 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
+.|..=++.=..||+||||+|.+|+++.-.
T Consensus 57 ~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~ 86 (287)
T TIGR02297 57 LQLDEHEYSEYAPCFFLTPPSVPHGFVTDL 86 (287)
T ss_pred EEECCEEEEecCCeEEEeCCCCccccccCC
Confidence 455566777779999999999999986543
No 44
>PF12852 Cupin_6: Cupin
Probab=28.21 E-value=44 Score=32.26 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=18.8
Q ss_pred EEeecCCeEEecCCCccccccch
Q 006941 532 FIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 532 f~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
+.=..||.||+|.|.+|...--.
T Consensus 57 ~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 57 IRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred EEecCCCEEEEcCCCCeEeCCCC
Confidence 55578999999999999985443
No 45
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=27.55 E-value=24 Score=36.10 Aligned_cols=47 Identities=23% Similarity=0.218 Sum_probs=39.4
Q ss_pred HhhhhcccCccchHHHHHHHHHhhcCCCcccCccchhhHHHHHHHHH-HHHHHHhCCC
Q 006941 557 IKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAV-SQAVKDISDP 613 (624)
Q Consensus 557 IKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~akeDKLeVKkm~l~A~-~~Av~~l~~~ 613 (624)
+.||+|+.+.+ ++++|++++... .|-++|..-++++. .++|++|++.
T Consensus 6 livALD~~~~~---~A~~l~~~l~~~-------v~~iKVG~~L~~~~G~~~i~~lk~~ 53 (218)
T PRK13305 6 LQLALDHTSLE---AAQRDVTLLKDH-------VDIVEAGTILCLNEGLGAVKALREQ 53 (218)
T ss_pred EEEEeCCCCHH---HHHHHHHHcccc-------CCEEEECHHHHHHhCHHHHHHHHHh
Confidence 56999999988 899999987632 47899999999998 7888888864
No 46
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=27.11 E-value=46 Score=32.67 Aligned_cols=20 Identities=35% Similarity=0.693 Sum_probs=15.7
Q ss_pred CcceEEEeecCCeEEecCCC
Q 006941 527 IEPWTFIQKLGEAVFVPAGC 546 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGC 546 (624)
+++-++.=+.||+||||.|.
T Consensus 110 ~~G~~~~A~~GDvi~iPkGs 129 (152)
T PF06249_consen 110 IDGQTVTAKPGDVIFIPKGS 129 (152)
T ss_dssp ETTEEEEEETT-EEEE-TT-
T ss_pred ECCEEEEEcCCcEEEECCCC
Confidence 56889999999999999996
No 47
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=26.99 E-value=40 Score=29.17 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=26.6
Q ss_pred CCcceEEEeecCCeEEecCCCccccccch--hhHhhhhcccCccchHH
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLK--SCIKAALDFVSPENVSQ 571 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~e 571 (624)
.|..=++.=..||++|||.|.+|...--. .+....+.| +|+-+.+
T Consensus 37 ~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~-~~~~~~~ 83 (136)
T PF02311_consen 37 HIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF-SPDFLEE 83 (136)
T ss_dssp EETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE----GGGG
T ss_pred EECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE-CHHHHHH
Confidence 45556677889999999999999987777 566555555 5544443
No 48
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=26.17 E-value=50 Score=27.89 Aligned_cols=17 Identities=41% Similarity=0.684 Sum_probs=13.1
Q ss_pred EEEeecCCeEEecCCCc
Q 006941 531 TFIQKLGEAVFVPAGCP 547 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCP 547 (624)
+..=..||+||||+|..
T Consensus 45 ~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEETTEEEEE-TTEE
T ss_pred EEEEcCCcEEEECCCCE
Confidence 45557999999999984
No 49
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=25.32 E-value=33 Score=33.59 Aligned_cols=65 Identities=28% Similarity=0.463 Sum_probs=34.6
Q ss_pred eeeC-CCChHHHHHHHHHHHhhhcCcCC---CCCccceecCHHHHHHHHHHhCCcceE-EEeecCCeEEecCCCcccc
Q 006941 478 DIFR-RQDISKLQDYLKKHFREFRHIHC---CPVQQVFYLSSEHKAKLKQEYGIEPWT-FIQKLGEAVFVPAGCPHQV 550 (624)
Q Consensus 478 DIFR-reDvpKLreyL~kh~~Ef~h~~~---~Pv~Q~fYLt~ehk~kLkEEyGVEpWt-f~Q~lGEAVFIPAGCPHQV 550 (624)
||.. +.+.|.+.+.+.+...|-.|... -.++++-|.+-+. +=.-|. +.=..||.+.||||.+|-.
T Consensus 66 dv~~~~~~~p~~~~~~~~f~~EH~H~deEvR~i~~G~g~Fdvr~--------~~~~wiri~~e~GDli~vP~g~~HrF 135 (157)
T PF03079_consen 66 DVVSLHPDHPNYEAKLKKFFEEHTHEDEEVRYIVDGSGYFDVRD--------GDDVWIRILCEKGDLIVVPAGTYHRF 135 (157)
T ss_dssp EEEESTTTSTCHHHHHHHHCS-EEESS-EEEEEEECEEEEEEE---------TTCEEEEEEEETTCEEEE-TT--EEE
T ss_pred EEEecCCCCcchhHHhhhhheeEecChheEEEEeCcEEEEEEEc--------CCCEEEEEEEcCCCEEecCCCCceeE
Confidence 4433 35555555555555554333221 1346554444432 225687 6667799999999999985
No 50
>KOG4822 consensus Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification; Signal transduction mechanisms]
Probab=24.76 E-value=32 Score=43.08 Aligned_cols=55 Identities=16% Similarity=0.087 Sum_probs=35.8
Q ss_pred cccccCCCccCCC----CCcCCCCCCCCC---------CCCCCCCCCCCCCCCcccCCCCCccCCCCC
Q 006941 33 FKVDSTPETDSKF----DTTPGTDSKVGS---------NPEKDSKGREKPISDWKANENGSILCPSIE 87 (624)
Q Consensus 33 ~~~~~~~~~~~g~----~y~~g~~~~~~~---------~~~~~~~~~~~~~~~W~a~~dGsI~Cpp~e 87 (624)
|.+--++|++.|- -|++|-+.-... ......+..+.-+.+|+-.+||+|||.|.|
T Consensus 275 ~~e~~~~~~~~~~~d~~~~~~~~d~~~~~~~t~~~~~~~~~~~rhs~~~~~~g~~~r~d~~~~~~~~e 342 (1906)
T KOG4822|consen 275 CSEGCLQFVNSGGMDQLVYLFGHDGQNSTTITLLLLGVVEQATRHSVCEGFLGWWPREDGSIPSGKSE 342 (1906)
T ss_pred hcccccccCCCcccCCcccccCCCCCCchHHHHHHHHHHHHHhhhhhhhhhccCCccccCCCCCCccc
Confidence 3355578888763 366666543211 001113456677999999999999999998
No 51
>PF05947 DUF879: Bacterial protein of unknown function (DUF879); InterPro: IPR010272 This entry represents a protein family associated with type VI secretion in a number of pathogenic bacteria [, ]. Mutation is associated with impaired virulence, such as impaired infection of plants by Rhizobium leguminosarum.
Probab=24.75 E-value=58 Score=38.05 Aligned_cols=65 Identities=25% Similarity=0.366 Sum_probs=50.6
Q ss_pred HHHHHHHhhhcCc--------------CCCCC-----ccceecCHHHHHHHHHHh-----------------CCcceEEE
Q 006941 490 DYLKKHFREFRHI--------------HCCPV-----QQVFYLSSEHKAKLKQEY-----------------GIEPWTFI 533 (624)
Q Consensus 490 eyL~kh~~Ef~h~--------------~~~Pv-----~Q~fYLt~ehk~kLkEEy-----------------GVEpWtf~ 533 (624)
.||++-..||... ..||. +..-|||+..++||-++| .|-.-|++
T Consensus 10 ~~LRe~~~eFA~~~P~iA~~L~l~~~~~~DP~VERLlEgfAfLtAri~~kLDd~~Pe~t~~LL~~L~P~~lrP~PS~tiv 89 (602)
T PF05947_consen 10 AYLRELGAEFAREYPKIARRLGLSADESEDPHVERLLEGFAFLTARIRQKLDDEFPELTESLLEVLYPHYLRPIPSMTIV 89 (602)
T ss_pred HHHHHHHHHHHHHChhhhhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhhhhhhcCCccceeEE
Confidence 5788888887432 23553 566999999999999998 67888888
Q ss_pred ee------cCCeEEecCCCccccccch
Q 006941 534 QK------LGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 534 Q~------lGEAVFIPAGCPHQVRNLk 554 (624)
|. +-+++.||+|.+-..++-.
T Consensus 90 qf~p~~~~~~~~~~iprGt~l~s~~~~ 116 (602)
T PF05947_consen 90 QFDPDPGKLTEGYTIPRGTELSSKPVD 116 (602)
T ss_pred EEeeChhhccCceEECCCCEEeccCCC
Confidence 86 4478899999998877665
No 52
>PRK13502 transcriptional activator RhaR; Provisional
Probab=23.99 E-value=57 Score=33.22 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=23.2
Q ss_pred hCCcceEEEeecCCeEEecCCCcccccc
Q 006941 525 YGIEPWTFIQKLGEAVFVPAGCPHQVRN 552 (624)
Q Consensus 525 yGVEpWtf~Q~lGEAVFIPAGCPHQVRN 552 (624)
+-|+.=++.-..||++|||+|.+|....
T Consensus 51 ~~i~~~~~~l~~g~l~li~~~~~H~~~~ 78 (282)
T PRK13502 51 HVLNERPYRITRGDLFYIRAEDKHSYTS 78 (282)
T ss_pred EEECCEEEeecCCcEEEECCCCcccccc
Confidence 3466677888999999999999998754
No 53
>TIGR03359 VI_chp_6 type VI secretion protein, VC_A0110 family. This protein family is associated with type VI secretion in a number of pathogenic bacteria. Mutation is associated with impaired virulence, such as impaired infection of plants by Rhizobium leguminosarum.
Probab=23.14 E-value=85 Score=36.74 Aligned_cols=64 Identities=22% Similarity=0.347 Sum_probs=50.1
Q ss_pred HHHHHHHhhhcCc--------------CCCCC-----ccceecCHHHHHHHHHHh-----------------CCcceEEE
Q 006941 490 DYLKKHFREFRHI--------------HCCPV-----QQVFYLSSEHKAKLKQEY-----------------GIEPWTFI 533 (624)
Q Consensus 490 eyL~kh~~Ef~h~--------------~~~Pv-----~Q~fYLt~ehk~kLkEEy-----------------GVEpWtf~ 533 (624)
.||++...||... ..||. +..-|||+..++||-++| .|-+-+++
T Consensus 10 ~yLR~~g~eFA~~~PkiA~rL~l~~~~~~DP~VERLlEgfAfLtARi~~kLDd~~Pe~t~~Ll~~L~P~yl~p~PS~siv 89 (598)
T TIGR03359 10 AYLRELGAEFAERYPKIAGRLGLSGEESEDPHVERLLEGFAFLTARIRQKLDDDFPELTEALLEVLYPHYLRPIPSMSIV 89 (598)
T ss_pred HHHHHHHHHHHHHChHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHhHhhcccHHHHHHHHHhhCccccCCCCceEEE
Confidence 5788888887421 23553 566999999999999998 68888888
Q ss_pred eec------CCeEEecCCCccccccc
Q 006941 534 QKL------GEAVFVPAGCPHQVRNL 553 (624)
Q Consensus 534 Q~l------GEAVFIPAGCPHQVRNL 553 (624)
|.- -+++.||+|.+-..+..
T Consensus 90 qf~p~~~~l~~~~~iprGt~l~s~~~ 115 (598)
T TIGR03359 90 QFEPDPGSLTQGVTIPRGTELTSRPV 115 (598)
T ss_pred EEecCccccCCCeEeCCCCEEecccC
Confidence 874 47899999998887775
No 54
>PRK13503 transcriptional activator RhaS; Provisional
Probab=22.19 E-value=27 Score=35.34 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=23.4
Q ss_pred hCCcceEEEeecCCeEEecCCCccccccchh
Q 006941 525 YGIEPWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 525 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
+.|..=++.=..|+++|||+|.+|..++...
T Consensus 48 ~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 48 HVFNGQPYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred eEecCCcccccCCcEEEECCCccchhhhccC
Confidence 3444445666889999999999998776654
No 55
>PF14816 FAM178: Family of unknown function, FAM178
Probab=22.16 E-value=50 Score=36.80 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=24.0
Q ss_pred ecCHHHHHHHHHHhCCcceEEE-eecCCeEE
Q 006941 512 YLSSEHKAKLKQEYGIEPWTFI-QKLGEAVF 541 (624)
Q Consensus 512 YLt~ehk~kLkEEyGVEpWtf~-Q~lGEAVF 541 (624)
=|+.|||. +.|.|+|..-.|- +|+||.||
T Consensus 62 ~l~~Ehr~-~lekfsv~~~~Ip~~HPGE~IF 91 (377)
T PF14816_consen 62 DLTPEHRE-FLEKFSVSLQAIPDVHPGEEIF 91 (377)
T ss_pred cCCHHHHH-HHHHhchhhccCCCCCCchhhc
Confidence 35789975 7779999988875 78899999
No 56
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=21.65 E-value=61 Score=33.05 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.5
Q ss_pred hCCcceEEEeecCCeEEecCCCcccc
Q 006941 525 YGIEPWTFIQKLGEAVFVPAGCPHQV 550 (624)
Q Consensus 525 yGVEpWtf~Q~lGEAVFIPAGCPHQV 550 (624)
+-|..=++.=..||.+|||+|..|+.
T Consensus 56 ~~i~~~~~~l~~g~l~~i~p~~~H~~ 81 (278)
T PRK10296 56 QEINGKRVLLERGDFVFIPLGSHHQS 81 (278)
T ss_pred EEECCEEEEECCCcEEEeCCCCccce
Confidence 45677778889999999999999986
No 57
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=21.29 E-value=74 Score=33.76 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=17.2
Q ss_pred eEEEeecCCeEEecCCC-ccccc
Q 006941 530 WTFIQKLGEAVFVPAGC-PHQVR 551 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGC-PHQVR 551 (624)
.++.=+.||+||||||+ +..++
T Consensus 271 ~~~~l~~G~~~~ipa~~~~~~i~ 293 (302)
T TIGR00218 271 KTLPLKKGESFFIPAHLGPFTIE 293 (302)
T ss_pred EEEEEecccEEEEccCCccEEEE
Confidence 45555779999999999 66664
No 58
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=20.10 E-value=66 Score=30.55 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=27.1
Q ss_pred eecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCC
Q 006941 511 FYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGC 546 (624)
Q Consensus 511 fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGC 546 (624)
-.+...+-+.|+++|||.-|.+ +.||-|-|=||-
T Consensus 25 k~msa~LSkeLr~~y~ir~~~I--kkGD~V~VisG~ 58 (120)
T PRK01191 25 KLMSAPLSKELREKYGIRSLPV--RKGDTVKVMRGD 58 (120)
T ss_pred HHhcCccCHHHHHHhCCccceE--eCCCEEEEeecC
Confidence 4445555577999999999976 589999999885
Done!