Query 006941
Match_columns 624
No_of_seqs 150 out of 205
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 13:01:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ypd_A Probable JMJC domain-co 100.0 6E-134 2E-138 1058.1 14.9 349 174-615 22-377 (392)
2 4gjz_A Lysine-specific demethy 99.3 8.5E-13 2.9E-17 126.6 3.7 136 175-352 10-152 (235)
3 3k2o_A Bifunctional arginine d 99.2 7.8E-11 2.7E-15 123.4 12.7 81 526-608 252-332 (336)
4 2yu1_A JMJC domain-containing 99.0 4.3E-09 1.5E-13 114.3 16.5 84 526-611 262-345 (451)
5 3k3o_A PHF8, PHD finger protei 99.0 3.7E-09 1.3E-13 112.3 14.2 84 526-612 213-297 (371)
6 3kv5_D JMJC domain-containing 98.9 2.7E-09 9.3E-14 116.9 11.4 83 527-611 333-415 (488)
7 3kv4_A PHD finger protein 8; e 98.9 1.2E-09 4E-14 118.6 8.2 82 526-612 297-381 (447)
8 3al5_A HTYW5, JMJC domain-cont 98.9 4.4E-10 1.5E-14 117.0 2.6 42 527-568 237-278 (338)
9 3pua_A GRC5, PHD finger protei 98.8 2.1E-08 7E-13 107.3 14.0 83 526-611 240-323 (392)
10 3kv9_A JMJC domain-containing 98.8 8.4E-09 2.9E-13 110.4 10.9 84 526-611 241-324 (397)
11 3d8c_A Hypoxia-inducible facto 98.7 1.3E-09 4.4E-14 114.2 0.3 41 526-566 257-298 (349)
12 3pur_A Lysine-specific demethy 97.6 2.5E-05 8.4E-10 86.3 3.4 87 473-577 327-413 (528)
13 2xxz_A Lysine-specific demethy 97.6 7.8E-05 2.7E-09 78.3 6.5 86 473-569 233-318 (332)
14 3avr_A Lysine-specific demethy 97.5 9.8E-05 3.4E-09 81.7 6.5 89 472-571 291-379 (531)
15 4ask_A Lysine-specific demethy 96.8 0.001 3.5E-08 73.1 5.5 87 472-569 266-352 (510)
16 3dxt_A JMJC domain-containing 96.2 0.0035 1.2E-07 66.4 5.2 92 475-571 210-303 (354)
17 3opt_A DNA damage-responsive t 95.6 0.012 4.2E-07 62.6 5.8 91 475-570 253-345 (373)
18 1vrb_A Putative asparaginyl hy 95.5 0.013 4.4E-07 61.3 5.5 80 527-611 215-304 (342)
19 2ox0_A JMJC domain-containing 95.2 0.017 5.9E-07 61.7 5.3 93 474-571 227-321 (381)
20 2opk_A Hypothetical protein; p 92.9 0.03 1E-06 48.7 1.3 23 532-554 75-97 (112)
21 3lag_A Uncharacterized protein 92.3 0.045 1.5E-06 47.0 1.6 23 532-554 61-83 (98)
22 3fjs_A Uncharacterized protein 92.2 0.038 1.3E-06 48.1 1.1 41 526-567 70-110 (114)
23 2pfw_A Cupin 2, conserved barr 91.9 0.047 1.6E-06 46.4 1.3 37 529-567 71-107 (116)
24 2fqp_A Hypothetical protein BP 91.7 0.078 2.7E-06 44.4 2.4 26 530-555 59-84 (97)
25 3ht1_A REMF protein; cupin fol 91.5 0.054 1.9E-06 47.6 1.3 41 527-567 76-116 (145)
26 2q30_A Uncharacterized protein 91.5 0.036 1.2E-06 46.3 0.1 36 529-566 73-108 (110)
27 3h8u_A Uncharacterized conserv 91.2 0.051 1.7E-06 47.0 0.8 37 530-566 79-115 (125)
28 2ozj_A Cupin 2, conserved barr 90.6 0.073 2.5E-06 45.4 1.2 32 526-557 72-103 (114)
29 2xlg_A SLL1785 protein, CUCA; 90.5 0.069 2.4E-06 53.3 1.1 50 531-580 103-163 (239)
30 1v70_A Probable antibiotics sy 90.4 0.056 1.9E-06 44.1 0.2 26 530-555 67-92 (105)
31 4e2g_A Cupin 2 conserved barre 90.3 0.12 4.1E-06 44.6 2.3 40 527-567 76-115 (126)
32 3d82_A Cupin 2, conserved barr 90.1 0.12 4E-06 42.5 2.0 26 531-556 69-94 (102)
33 2b8m_A Hypothetical protein MJ 89.8 0.11 3.9E-06 44.4 1.7 35 533-567 69-105 (117)
34 1o5u_A Novel thermotoga mariti 89.7 0.097 3.3E-06 45.4 1.2 29 529-557 67-95 (101)
35 1yhf_A Hypothetical protein SP 89.5 0.11 3.8E-06 44.0 1.4 31 527-557 75-105 (115)
36 2i45_A Hypothetical protein; n 88.8 0.15 5.2E-06 43.0 1.8 27 530-556 67-93 (107)
37 3kgz_A Cupin 2 conserved barre 88.7 0.13 4.3E-06 47.8 1.3 41 527-567 79-119 (156)
38 2gu9_A Tetracenomycin polyketi 88.5 0.12 4E-06 43.1 0.8 39 529-567 61-99 (113)
39 2ozi_A Hypothetical protein RP 88.4 0.14 4.7E-06 44.2 1.2 24 532-555 61-84 (98)
40 3ibm_A Cupin 2, conserved barr 88.2 0.13 4.3E-06 48.1 1.0 41 527-567 91-132 (167)
41 1juh_A Quercetin 2,3-dioxygena 88.2 0.13 4.5E-06 53.5 1.1 40 531-571 292-332 (350)
42 3lwc_A Uncharacterized protein 87.7 0.24 8.4E-06 43.8 2.4 25 529-553 76-100 (119)
43 3h7j_A Bacilysin biosynthesis 87.6 0.14 4.8E-06 50.2 0.9 41 527-567 181-221 (243)
44 1lr5_A Auxin binding protein 1 87.3 0.19 6.4E-06 45.9 1.5 25 530-554 88-112 (163)
45 2oa2_A BH2720 protein; 1017534 87.2 0.3 1E-05 44.0 2.8 26 530-555 88-113 (148)
46 1y9q_A Transcriptional regulat 86.6 0.13 4.5E-06 48.0 0.0 43 525-568 139-181 (192)
47 3cew_A Uncharacterized cupin p 86.3 0.24 8.3E-06 42.9 1.6 28 527-554 63-90 (125)
48 4axo_A EUTQ, ethanolamine util 85.9 0.2 7E-06 46.9 0.9 41 527-569 99-139 (151)
49 2o8q_A Hypothetical protein; c 85.4 0.39 1.3E-05 42.0 2.4 39 530-569 83-121 (134)
50 3l2h_A Putative sugar phosphat 85.2 0.24 8.3E-06 45.0 1.1 38 529-566 85-123 (162)
51 3rns_A Cupin 2 conserved barre 85.0 0.26 9E-06 47.8 1.3 30 527-556 188-218 (227)
52 3jzv_A Uncharacterized protein 84.7 0.46 1.6E-05 44.6 2.7 29 527-555 88-116 (166)
53 4i4a_A Similar to unknown prot 84.0 0.54 1.9E-05 40.5 2.7 54 527-584 69-124 (128)
54 1vj2_A Novel manganese-contain 83.9 0.23 7.8E-06 43.5 0.3 28 528-555 84-111 (126)
55 1x82_A Glucose-6-phosphate iso 83.3 0.32 1.1E-05 46.2 1.1 40 528-567 117-156 (190)
56 1y3t_A Hypothetical protein YX 81.6 0.36 1.2E-05 48.5 0.7 49 527-576 254-302 (337)
57 1qwr_A Mannose-6-phosphate iso 81.6 0.49 1.7E-05 49.0 1.7 19 532-550 160-178 (319)
58 1o4t_A Putative oxalate decarb 81.3 0.51 1.8E-05 41.8 1.5 28 527-554 93-120 (133)
59 1rc6_A Hypothetical protein YL 81.0 0.48 1.6E-05 46.8 1.4 30 526-555 214-243 (261)
60 2bnm_A Epoxidase; oxidoreducta 80.9 0.55 1.9E-05 43.7 1.7 24 530-553 162-185 (198)
61 1zx5_A Mannosephosphate isomer 80.8 0.54 1.9E-05 48.3 1.7 19 532-550 160-178 (300)
62 3rns_A Cupin 2 conserved barre 79.9 0.45 1.5E-05 46.2 0.7 53 503-560 53-105 (227)
63 1fi2_A Oxalate oxidase, germin 79.8 0.65 2.2E-05 44.3 1.8 41 528-568 117-157 (201)
64 3i7d_A Sugar phosphate isomera 79.7 0.54 1.8E-05 43.5 1.2 39 528-566 81-121 (163)
65 3bcw_A Uncharacterized protein 79.1 0.63 2.1E-05 41.7 1.3 30 531-560 88-117 (123)
66 2vpv_A Protein MIF2, MIF2P; nu 78.6 0.98 3.4E-05 43.0 2.6 29 527-555 125-153 (166)
67 1sef_A Conserved hypothetical 78.6 0.72 2.5E-05 46.0 1.7 30 526-555 217-246 (274)
68 2f4p_A Hypothetical protein TM 78.5 0.63 2.2E-05 42.1 1.2 35 532-566 89-123 (147)
69 2wfp_A Mannose-6-phosphate iso 76.8 0.84 2.9E-05 48.7 1.7 18 532-549 242-259 (394)
70 2pyt_A Ethanolamine utilizatio 76.7 0.7 2.4E-05 41.8 0.9 33 528-560 91-123 (133)
71 4e2q_A Ureidoglycine aminohydr 76.4 0.91 3.1E-05 46.2 1.8 27 527-553 222-248 (266)
72 2xdv_A MYC-induced nuclear ant 75.8 1.3 4.6E-05 47.9 3.0 31 524-554 193-223 (442)
73 3h7j_A Bacilysin biosynthesis 75.7 0.92 3.1E-05 44.4 1.5 29 527-555 69-98 (243)
74 1y3t_A Hypothetical protein YX 75.4 0.74 2.5E-05 46.2 0.8 47 527-574 82-128 (337)
75 1pmi_A PMI, phosphomannose iso 75.2 0.98 3.4E-05 49.0 1.7 18 532-549 268-285 (440)
76 1juh_A Quercetin 2,3-dioxygena 74.6 0.69 2.4E-05 48.1 0.4 48 530-578 94-141 (350)
77 1dgw_A Canavalin; duplicated s 74.2 1.4 4.9E-05 41.3 2.4 27 529-555 82-108 (178)
78 4h7l_A Uncharacterized protein 73.4 1.1 3.6E-05 42.5 1.3 28 525-552 81-108 (157)
79 1sq4_A GLXB, glyoxylate-induce 72.6 1.6 5.5E-05 43.9 2.5 28 527-554 105-132 (278)
80 4diq_A Lysine-specific demethy 71.8 1.3 4.6E-05 48.7 1.8 72 471-565 192-265 (489)
81 3nw4_A Gentisate 1,2-dioxygena 70.2 2 7E-05 45.6 2.7 27 527-553 139-165 (368)
82 1sfn_A Conserved hypothetical 70.1 1.5 5.1E-05 43.1 1.6 30 527-556 83-112 (246)
83 2vqa_A SLL1358 protein, MNCA; 70.1 1.5 5E-05 44.9 1.5 52 531-583 279-330 (361)
84 3bu7_A Gentisate 1,2-dioxygena 69.5 2.1 7E-05 45.9 2.6 29 526-554 328-356 (394)
85 1sfn_A Conserved hypothetical 68.2 1.9 6.3E-05 42.5 1.7 31 524-554 198-228 (246)
86 1rc6_A Hypothetical protein YL 67.0 2.5 8.7E-05 41.6 2.5 29 527-555 96-124 (261)
87 1j58_A YVRK protein; cupin, de 66.2 2.8 9.6E-05 43.3 2.7 27 529-555 300-326 (385)
88 2d40_A Z3393, putative gentisa 65.5 2.7 9.4E-05 43.8 2.5 40 527-566 136-175 (354)
89 1sef_A Conserved hypothetical 65.3 2.8 9.6E-05 41.7 2.4 29 527-555 99-127 (274)
90 2d40_A Z3393, putative gentisa 61.2 3.9 0.00013 42.6 2.7 27 527-553 303-329 (354)
91 4b29_A Dimethylsulfoniopropion 61.1 2.4 8.3E-05 42.1 1.0 29 525-553 165-194 (217)
92 1zrr_A E-2/E-2' protein; nicke 60.5 3.4 0.00012 39.5 1.9 25 531-555 123-147 (179)
93 3es1_A Cupin 2, conserved barr 60.4 2.1 7.3E-05 40.7 0.5 35 531-566 119-153 (172)
94 2vqa_A SLL1358 protein, MNCA; 58.4 4.2 0.00014 41.5 2.3 25 530-554 96-120 (361)
95 2arc_A ARAC, arabinose operon 57.1 5.5 0.00019 34.9 2.6 29 526-554 52-80 (164)
96 4e2q_A Ureidoglycine aminohydr 56.6 3.9 0.00013 41.6 1.7 24 531-554 110-133 (266)
97 1sq4_A GLXB, glyoxylate-induce 56.4 4.7 0.00016 40.5 2.3 30 525-554 225-254 (278)
98 1vr3_A Acireductone dioxygenas 56.0 4 0.00014 39.6 1.6 37 531-567 128-164 (191)
99 3bu7_A Gentisate 1,2-dioxygena 55.9 5.2 0.00018 42.8 2.6 27 526-552 158-184 (394)
100 2d5f_A Glycinin A3B4 subunit; 54.2 3 0.0001 45.8 0.5 36 532-567 115-150 (493)
101 2e9q_A 11S globulin subunit be 50.9 3.2 0.00011 45.2 -0.0 36 533-568 130-165 (459)
102 3c3v_A Arachin ARAH3 isoform; 47.6 4.2 0.00014 45.0 0.2 36 533-568 129-164 (510)
103 2y0o_A Probable D-lyxose ketol 45.3 6.2 0.00021 37.9 1.0 42 528-571 116-158 (175)
104 1fxz_A Glycinin G1; proglycini 44.8 4.8 0.00017 44.0 0.2 30 531-560 114-143 (476)
105 1j58_A YVRK protein; cupin, de 44.5 9.7 0.00033 39.3 2.4 25 531-555 123-147 (385)
106 3cjx_A Protein of unknown func 41.3 6.4 0.00022 37.1 0.4 33 535-567 85-126 (165)
107 1uij_A Beta subunit of beta co 41.1 12 0.0004 40.1 2.4 26 528-553 89-114 (416)
108 2cav_A Protein (canavalin); vi 39.8 12 0.00042 40.4 2.4 25 530-554 128-152 (445)
109 1fxz_A Glycinin G1; proglycini 39.6 7.9 0.00027 42.3 0.8 37 530-566 383-419 (476)
110 2ea7_A 7S globulin-1; beta bar 37.4 15 0.0005 39.7 2.5 26 529-554 102-127 (434)
111 2o1q_A Putative acetyl/propion 32.0 12 0.00041 33.9 0.6 24 535-558 89-113 (145)
112 3nw4_A Gentisate 1,2-dioxygena 31.6 18 0.00062 38.4 2.0 103 240-352 22-131 (368)
113 2d5f_A Glycinin A3B4 subunit; 26.9 12 0.0004 41.2 -0.5 52 531-584 413-464 (493)
114 3kgl_A Cruciferin; 11S SEED gl 25.0 24 0.00082 38.6 1.5 20 535-554 150-169 (466)
115 3c3v_A Arachin ARAH3 isoform; 24.2 27 0.00094 38.6 1.8 37 530-566 417-453 (510)
116 3eqe_A Putative cystein deoxyg 24.0 40 0.0014 31.8 2.7 37 531-567 118-154 (171)
117 3qac_A 11S globulin SEED stora 21.9 22 0.00076 38.9 0.5 35 534-568 134-168 (465)
118 3ksc_A LEGA class, prolegumin; 21.6 28 0.00095 38.4 1.2 21 535-555 115-135 (496)
119 3fz3_A Prunin; TREE NUT allerg 20.0 36 0.0012 37.9 1.7 22 535-556 177-198 (531)
No 1
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.4e-134 Score=1058.10 Aligned_cols=349 Identities=32% Similarity=0.550 Sum_probs=270.1
Q ss_pred CChHHHHHHHhcCCCEEEEeccccccCCCCChhHHHHHHHHhhccccccccceeeeecCCCceeecchhhhhccccCCcc
Q 006941 174 GDLKHFQWHWAKGEPVIVSNVLENALGLSWDPMVMWRACRQISNTKHRLYLDVKAIDCLDWCEGEVNIHQFFKGYTDGRF 253 (624)
Q Consensus 174 ~~l~hFQ~hW~kGePVIVr~Vl~~~s~lsWeP~~mwra~~e~~~~~~~~~~~vkaiDCld~~evei~i~qFf~Gy~~gR~ 253 (624)
+|+.|||+||++|||||||||++++++++|+|++|||+|++ ..+++|||++|++++|++++||+||++++.
T Consensus 22 ~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd---------~~~~lidC~~~~~~~i~v~~Ff~Gf~~~~~ 92 (392)
T 2ypd_A 22 SNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGD---------HQADLLNCKDSIISNANVKEFWDGFEEVSK 92 (392)
T ss_dssp THHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTT---------SCCCCEETTTCCBCSCCHHHHHHTSSBGGG
T ss_pred ccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcC---------ceeeeeeCCCCccccCcHHHHhhhcccccc
Confidence 89999999999999999999999999999999999999975 237789999999999999999999999753
Q ss_pred ---CCCCCcceeecCCCCChhhHHHhcchhhHHhhhCCCCcCccCCCCCcccccccCCCCCCCCCCCCceeecccccccc
Q 006941 254 ---DKESWPQILKLKDWPPSNLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVAQEL 330 (624)
Q Consensus 254 ---~~~gwp~mLKLKDWPps~~F~e~LP~h~~eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YIAYG~~eEl 330 (624)
+++|||+|||||||||+++|+++||+||+|||++|||||||||+ |+||||++||+++++||||||||||||+++++
T Consensus 93 r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~YiAYG~~~~~ 171 (392)
T 2ypd_A 93 RQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAK 171 (392)
T ss_dssp C------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEEECCSTTTT
T ss_pred CCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhhhcCcchhc
Confidence 57999999999999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred CCCCCcccccccccchhhhhhccccccCChhHHHHHHHHHHHHHhhhhhhhhcCCCCCCccccCCCCCCccccccCCCCC
Q 006941 331 GRADSVTKLHCDMSDAVNVLTHTTDVKLKPEHLAKIEKLKQQHKAQDQMEFFGCSQFSDENSHANSSAIPVKNEQCGGKP 410 (624)
Q Consensus 331 GrGDSvTkLH~DmSDAVNIL~htaev~~~~~~~~~i~kLk~~~~~qd~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 410 (624)
|+|+|||||||||||||||||||++++. .+...+.+.+ +++.++++.+.+.
T Consensus 172 ~~~~gvT~LH~DmsDaVNiL~h~~~~~~-~~~~~~~~~l-~~~~~~~~d~~~~--------------------------- 222 (392)
T 2ypd_A 172 DHDIGTTNLHIEVSDVVNILVYVGIAKG-NGILSKAGIL-KKFEEEDLDDILR--------------------------- 222 (392)
T ss_dssp CTTCCSEEEEECSSEEEEEEEEEECCBC-TTCCCHHHHH-HHHHTSCCCHHHH---------------------------
T ss_pred ccCCCcceeeeehhhhhhhhheecccCc-cccchhhhhh-hhhhhccccHHHh---------------------------
Confidence 9999999999999999999999997653 2222222322 2233222111100
Q ss_pred CCCCCCcccCCCccccccCCCCCccccchhhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCceeeeeeCCCChHHHHH
Q 006941 411 DDGDGVGVVPQDSQICDSMLNDPIPVQRAISEEASEAIADLGKSRESGEPSNIPENEFESADGGAVWDIFRRQDISKLQD 490 (624)
Q Consensus 411 ~~~~~v~~~~~~~~~c~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFRreDvpKLre 490 (624)
. . + .+..+.+||+||||||||++|||+
T Consensus 223 -----------------------------------~-r--~---------------~~~~~~~GAlW~Ifr~~D~~klr~ 249 (392)
T 2ypd_A 223 -----------------------------------K-R--L---------------KDSSEIPGALWHIYAGKDVDKIRE 249 (392)
T ss_dssp -----------------------------------H-H--H---------------TCTTCCEEEEEEEECGGGHHHHHH
T ss_pred -----------------------------------h-h--c---------------cCCCCCCCceeeeeCHhhHHHHHH
Confidence 0 0 0 012367999999999999999999
Q ss_pred HHHHHHhhhcC---cCCCCC-ccceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCc
Q 006941 491 YLKKHFREFRH---IHCCPV-QQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSP 566 (624)
Q Consensus 491 yL~kh~~Ef~h---~~~~Pv-~Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 566 (624)
||++|++||.. ...+|| +|.||||++||++|+|||||+||||+|++|||||||||||||||||+||||||+|||||
T Consensus 250 ~L~~~~~e~~~~~~~~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~sp 329 (392)
T 2ypd_A 250 FLQKISKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSP 329 (392)
T ss_dssp HHHHHHHHHC------CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCG
T ss_pred HHHHHHHhhCCCccCCCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcCh
Confidence 99999999863 245777 79999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhcCCCcccCccchhhHHHHHHHHHHHHHHHhCCCCC
Q 006941 567 ENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAVSQAVKDISDPGA 615 (624)
Q Consensus 567 EnV~ec~rLteEfR~Lp~~H~akeDKLeVKkm~l~A~~~Av~~l~~~~~ 615 (624)
|||++|++||+|||+|| +|++||||||||||+||||++||++|+...+
T Consensus 330 e~~~~c~~lt~E~R~l~-~~~~~edkLqvk~m~~~av~~av~~l~~~~~ 377 (392)
T 2ypd_A 330 EHLVESFHLTQELRLLK-EEINYDDKLQVKNILYHAVKEMVRALKIHED 377 (392)
T ss_dssp GGHHHHHHHHHHC------------------------------------
T ss_pred hhHHHHHHHHHHHhhcc-hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999997 6999999999999999999999999997643
No 2
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=99.29 E-value=8.5e-13 Score=126.58 Aligned_cols=136 Identities=16% Similarity=0.256 Sum_probs=75.7
Q ss_pred ChHHH-HHHHhcCCCEEEEeccccccC-CCCChhHHHHHHHHhhccccccccceeeeecC-----CCceeecchhhhhcc
Q 006941 175 DLKHF-QWHWAKGEPVIVSNVLENALG-LSWDPMVMWRACRQISNTKHRLYLDVKAIDCL-----DWCEGEVNIHQFFKG 247 (624)
Q Consensus 175 ~l~hF-Q~hW~kGePVIVr~Vl~~~s~-lsWeP~~mwra~~e~~~~~~~~~~~vkaiDCl-----d~~evei~i~qFf~G 247 (624)
..+.| +++|.+++|||++|+.+.-.. -.|++.++-+.+++ ..|.+-.|. ++....+++.+|...
T Consensus 10 S~~eF~~~y~~~~~Pvvi~g~~~~wpa~~~w~~~yL~~~~g~---------~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (235)
T 4gjz_A 10 SLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGC---------RTVPVEVGSRYTDEEWSQTLMTVNEFISK 80 (235)
T ss_dssp CHHHHHHHTTTTTCCEEEESSSTTSHHHHHCSHHHHHHHHTT---------SEEEEEEC-------CEEEEEEHHHHHHH
T ss_pred CHHHHHHHHhcCCCcEEEeCCCcCCcccccCCHHHHHHHcCC---------CeEEEEecCcccCCccceeeccHHHHHHH
Confidence 45677 568899999999998764322 25888887665543 223333332 234456788888877
Q ss_pred ccCCccCCCCCcceeecCCCCChhhHHHhcchhhHHhhhCCCCcCccCCCCCcccccccCCCCCCCCCCCCceeeccccc
Q 006941 248 YTDGRFDKESWPQILKLKDWPPSNLFEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSLKPDMGPKTYIAYGVA 327 (624)
Q Consensus 248 y~~gR~~~~gwp~mLKLKDWPps~~F~e~LP~h~~eFi~aLP~~EYT~pr~G~LNLAakLP~~~lkPDLGPK~YIAYG~~ 327 (624)
+...... ..+-+.++. +.+ ...++..-+.+|.|.....+.. .+..+-+|
T Consensus 81 ~~~~~~~-----~~~y~~~~~----~~~----~~~~l~~d~~~p~~~~~~~~~~------------~~~~~~~w------ 129 (235)
T 4gjz_A 81 YIVNEPR-----DVGYLAQHQ----LFD----QIPELKQDISIPDYCSLGDGEE------------EEITINAW------ 129 (235)
T ss_dssp HTSSCCS-----SCEEEEEEC----HHH----HCHHHHTTCCCCGGGGGSSSCG------------GGCEEEEE------
T ss_pred HhhcCCc-----ccceeehhh----hhh----hhHHHHHhhcCCcccccccccc------------CccceEEE------
Confidence 7643221 223333332 333 3344555556666653211111 11112233
Q ss_pred cccCCCCCcccccccccchhhhhhc
Q 006941 328 QELGRADSVTKLHCDMSDAVNVLTH 352 (624)
Q Consensus 328 eElGrGDSvTkLH~DmSDAVNIL~h 352 (624)
.|.+.++|.||.|..|..+++++
T Consensus 130 --iG~~gs~t~~H~D~~~n~~~qv~ 152 (235)
T 4gjz_A 130 --FGPQGTISPLHQDPQQNFLVQVM 152 (235)
T ss_dssp --EECTTCEEEEECCSSEEEEEEEE
T ss_pred --EeCCCCCceeeeccccceEEEEe
Confidence 34566899999999987665554
No 3
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=99.20 E-value=7.8e-11 Score=123.40 Aligned_cols=81 Identities=30% Similarity=0.336 Sum_probs=61.2
Q ss_pred CCcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHHHHHHhhcCCCcccCccchhhHHHHHHHHHHH
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAVSQ 605 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~akeDKLeVKkm~l~A~~~ 605 (624)
+..++.++|.+||++|||+|..|||+|+..||.|+..|+++.|+...+++|-+ .-|+-.+-=..+|+-+.=-++++..
T Consensus 252 ~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~--~~p~~~~~~~~~~~~~~p~~~~~~~ 329 (336)
T 3k2o_A 252 EFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVR--GRPKLSRKWYRILKQEHPELAVLAD 329 (336)
T ss_dssp GGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHH--HCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHHHHHHh--hChHHHHHHHHHHHHhCchHHHHHh
Confidence 46889999999999999999999999999999999999999999999999953 3333222222333333344455544
Q ss_pred HHH
Q 006941 606 AVK 608 (624)
Q Consensus 606 Av~ 608 (624)
+|.
T Consensus 330 ~~~ 332 (336)
T 3k2o_A 330 SVD 332 (336)
T ss_dssp HHH
T ss_pred hcC
Confidence 443
No 4
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=99.01 E-value=4.3e-09 Score=114.28 Aligned_cols=84 Identities=14% Similarity=0.081 Sum_probs=66.0
Q ss_pred CCcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHHHHHHhhcCCCcccCccchhhHHHHHHHHHHH
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAVSQ 605 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~akeDKLeVKkm~l~A~~~ 605 (624)
.-++..++|..||++|||+|.-|||.||..||-|+..|++.-|+...+++++==+++--..+. .=--...|++||+..
T Consensus 262 ~~~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~~E~~~~v~~~~--~~p~f~~~~w~~~~~ 339 (451)
T 2yu1_A 262 VSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKF--RYPFYYEMCWYVLER 339 (451)
T ss_dssp SSCCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHHHHHHTTCCTTS--SCTTHHHHHHHHHHH
T ss_pred cccceEEEECCCcEEEeCCCceEEEecCCCeEEEeeeeCCcccHHHHHHHHHHHHhhCCCccc--cCccHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999887622222211111 112245899999998
Q ss_pred HHHHhC
Q 006941 606 AVKDIS 611 (624)
Q Consensus 606 Av~~l~ 611 (624)
-++.|.
T Consensus 340 ~~~~~~ 345 (451)
T 2yu1_A 340 YVYCIT 345 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887763
No 5
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=98.98 E-value=3.7e-09 Score=112.25 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=66.6
Q ss_pred CCcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHHHHH-HhhcCCCcccCccchhhHHHHHHHHHH
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTE-EFRLLPPNHRAKEDKLEVKKMILYAVS 604 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLte-EfR~Lp~~H~akeDKLeVKkm~l~A~~ 604 (624)
..+++.++|..||++|||+|..|||.||..||-|+..|++..|+...++..+ |-|. ... .|--=-...+|++|+++
T Consensus 213 ~~~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~-~~~--~~f~fp~F~~~~w~~~~ 289 (371)
T 3k3o_A 213 VDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRL-STA--DLFRFPNFETICWYVGK 289 (371)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHH-C------CCCTTHHHHHHHHHH
T ss_pred cCceEEEEECCCcEEEeCCCCeEEEecCCCeEEECCcccchhhHHHHHHHHHHHHhc-CCC--cccccccHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999887 4333 110 01111135788999998
Q ss_pred HHHHHhCC
Q 006941 605 QAVKDISD 612 (624)
Q Consensus 605 ~Av~~l~~ 612 (624)
..+..|++
T Consensus 290 ~~~~~~~~ 297 (371)
T 3k3o_A 290 HILDIFRG 297 (371)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877763
No 6
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.93 E-value=2.7e-09 Score=116.87 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=66.1
Q ss_pred CcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHHHHHHhhcCCCcccCccchhhHHHHHHHHHHHH
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAVSQA 606 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~akeDKLeVKkm~l~A~~~A 606 (624)
.+++.++|..||++|||+|..|||.||..||-|...|++..|+...++..+==+.|.. ..+-.-.....|++|+++.-
T Consensus 333 ~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~e~~~~~--~~~~~~p~f~~~~w~~~~~~ 410 (488)
T 3kv5_D 333 DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKT--PDLFKFPFFEAICWFVAKNL 410 (488)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHTTC--CTTSSCTTHHHHHHHHHHHH
T ss_pred cceEEEeeCCCCEEEeCCCceEEeeCCCCeEEEccccCCccCHHHHHHHHHHHHhcCC--cccccCccHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999887654444422 12222335567788888876
Q ss_pred HHHhC
Q 006941 607 VKDIS 611 (624)
Q Consensus 607 v~~l~ 611 (624)
+..|+
T Consensus 411 l~~~~ 415 (488)
T 3kv5_D 411 LETLK 415 (488)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66664
No 7
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=118.58 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=68.0
Q ss_pred CCcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHHHHHHhhcCCCcccCccchh---hHHHHHHHH
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKL---EVKKMILYA 602 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~akeDKL---eVKkm~l~A 602 (624)
..+++.++|..||++|||+|..|||.||..||-|+..|++..|+..-++..+==+++.. .+|. ...+|++|+
T Consensus 297 ~~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~E~~~~~-----~~~~~~p~f~~~~w~~ 371 (447)
T 3kv4_A 297 VDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLST-----ADLFRFPNFETICWYV 371 (447)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHHHHHHTTC-----CGGGSCTTHHHHHHHH
T ss_pred ccceEEEEECCCcEEecCCCCeEEEecCCCEEEEccccccccCHHHHHHHHHHHHhcCC-----CccccccCHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999998873333321 2332 357889999
Q ss_pred HHHHHHHhCC
Q 006941 603 VSQAVKDISD 612 (624)
Q Consensus 603 ~~~Av~~l~~ 612 (624)
++..+..|++
T Consensus 372 ~~~~~~~~~~ 381 (447)
T 3kv4_A 372 GKHILDIFRG 381 (447)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887763
No 8
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=98.88 E-value=4.4e-10 Score=117.05 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=39.5
Q ss_pred CcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccc
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPEN 568 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 568 (624)
+.++.+++.+||++|||+|..|||+|+..||.|..-|.++..
T Consensus 237 ~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~~ 278 (338)
T 3al5_A 237 ARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPS 278 (338)
T ss_dssp CCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSSCG
T ss_pred CCCEEEEECCCCEEEECCCCeEEEeeCCCEEEEEEEecCCcc
Confidence 579999999999999999999999999999999999998874
No 9
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=98.84 E-value=2.1e-08 Score=107.26 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=67.3
Q ss_pred CCcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHHHHH-HhhcCCCcccCccchhhHHHHHHHHHH
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTE-EFRLLPPNHRAKEDKLEVKKMILYAVS 604 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLte-EfR~Lp~~H~akeDKLeVKkm~l~A~~ 604 (624)
..++..++|..||++|||+|..|||.|+..||-|...|++..|+..-++..+ |-|.=. .. +-.=-...+|++|++.
T Consensus 240 ~~~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~~E~~~~~-~~--~f~fp~F~~~~wy~~~ 316 (392)
T 3pua_A 240 VDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVERRLKL-GS--LTQFPNFETACWYMGK 316 (392)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHHHHHHHTC-CC--SSCCTTHHHHHHHHHH
T ss_pred ccceEEEEECCCcEEeeCCCceEEEecCCCEEEEcCcccChhhHHHHHHHHHHHHHhCC-Cc--cCcCCChHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999888 544321 11 1111246788999988
Q ss_pred HHHHHhC
Q 006941 605 QAVKDIS 611 (624)
Q Consensus 605 ~Av~~l~ 611 (624)
.-++.|+
T Consensus 317 ~~l~~~~ 323 (392)
T 3pua_A 317 HLLEAFK 323 (392)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777776
No 10
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=98.84 E-value=8.4e-09 Score=110.40 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHHHHHHhhcCCCcccCccchhhHHHHHHHHHHH
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPPNHRAKEDKLEVKKMILYAVSQ 605 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~akeDKLeVKkm~l~A~~~ 605 (624)
..+++.++|..||++|||+|..|||.|+..||-|...|+++.|+...++..+==+.|.. ..+-+=.....|++|++..
T Consensus 241 ~~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~k~--~~~~~fp~F~~~~w~~a~~ 318 (397)
T 3kv9_A 241 VDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKT--PDLFKFPFFEAICWFVAKN 318 (397)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHTC--GGGGGSTTHHHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCeEEccCCcCeEEECCcccCchhHHHHHHHHHHHHhcCC--CccCcCccHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999988887653333321 1222333567788888887
Q ss_pred HHHHhC
Q 006941 606 AVKDIS 611 (624)
Q Consensus 606 Av~~l~ 611 (624)
-++.|+
T Consensus 319 ~l~~~~ 324 (397)
T 3kv9_A 319 LLETLK 324 (397)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666664
No 11
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=98.73 E-value=1.3e-09 Score=114.22 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=36.8
Q ss_pred CCcceEEEeecCCeEEecCCCccccccch-hhHhhhhcccCc
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLK-SCIKAALDFVSP 566 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLk-SCIKVAlDFVSP 566 (624)
.+.++.+++.+||++|||+|..|||+||. .|+.|++.|..+
T Consensus 257 ~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~~ 298 (349)
T 3d8c_A 257 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYK 298 (349)
T ss_dssp GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEEE
T ss_pred cCCcEEEEECCCCEEEECCCCcEEEEEcCCCCcEEEEEEEcC
Confidence 35799999999999999999999999998 588899998763
No 12
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.59 E-value=2.5e-05 Score=86.26 Aligned_cols=87 Identities=16% Similarity=0.245 Sum_probs=63.3
Q ss_pred CceeeeeeCCCChHHHHHHHHHHHhhhcCcCCCCCccceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccc
Q 006941 473 GGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRN 552 (624)
Q Consensus 473 ~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~Pv~Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRN 552 (624)
|.-.|=+|++.+.+ |..| +.+.- ++..-.||.+. +......++|..||++|||+|..|+|.|
T Consensus 327 GrK~w~L~PPt~~n-l~~y--~~w~~------s~~~~~wfgd~---------l~~~~~~v~l~pGEtlfIPsGW~HaV~t 388 (528)
T 3pur_A 327 GEKIFYIAAPTEQN-FAAY--QAHET------SPDTTTWFGDI---------ANGAVKRVVIKEGQTLLIPAGWIHAVLT 388 (528)
T ss_dssp EEEEEEEECCCHHH-HHHH--HHHHH------SSCCSCCGGGG---------TTTCCEEEEEETTCEEEECTTCEEEEEE
T ss_pred ceEEEEEeCCCccc-hhhh--hhhcc------CCchhhhhccc---------ccccEEEEEECCCCEEEecCCceEEEec
Confidence 45688888886544 3222 22211 12222355531 2344568999999999999999999999
Q ss_pred chhhHhhhhcccCccchHHHHHHHH
Q 006941 553 LKSCIKAALDFVSPENVSQCVRLTE 577 (624)
Q Consensus 553 LkSCIKVAlDFVSPEnV~ec~rLte 577 (624)
+..||-|..+|++..|+..-+++++
T Consensus 389 leDSIaiggNFl~~~nl~~qlri~~ 413 (528)
T 3pur_A 389 PVDSLVFGGNFLHLGNLEMQMRVYH 413 (528)
T ss_dssp EEEEEEEEEEECCGGGHHHHHHHHH
T ss_pred CCCeEEEcCcccchhhHHHHHHHHH
Confidence 9999999999999999999888664
No 13
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=97.56 E-value=7.8e-05 Score=78.31 Aligned_cols=86 Identities=17% Similarity=0.272 Sum_probs=72.7
Q ss_pred CceeeeeeCCCChHHHHHHHHHHHhhhcCcCCCCCccceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccc
Q 006941 473 GGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRN 552 (624)
Q Consensus 473 ~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~Pv~Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRN 552 (624)
+-.+|=.=..+...+++++++++.. +.+++.++++.+- |++ .||.=+.|+|++||.|+|++||-|||.|
T Consensus 233 ~~~~Wy~VP~e~~~~~e~l~~k~~~-------d~~~~~~~~~p~~---L~~-~gIPvyr~~QkpGd~Vi~~PgayH~v~n 301 (332)
T 2xxz_A 233 GDCEWFAVHEHYWETISAFCDRHGV-------DYLTGSWWPILDD---LYA-SNIPVYRFVQRPGDLVWINAGTVHWVQA 301 (332)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTTC-------CTTTSCBCCCHHH---HHH-TTCCCEEEEECTTCEEEECTTCEEEEEE
T ss_pred CceEEEEECHHHHHHHHHHHHhcCC-------chhhceecCCHHH---HHh-CCCCeEEEEECCCCEEEECCCceEEEEe
Confidence 4568999999999999999987543 3345667777643 443 4999999999999999999999999999
Q ss_pred chhhHhhhhcccCccch
Q 006941 553 LKSCIKAALDFVSPENV 569 (624)
Q Consensus 553 LkSCIKVAlDFVSPEnV 569 (624)
.=-|+++|-.|..|...
T Consensus 302 ~G~~~n~awN~a~~~~~ 318 (332)
T 2xxz_A 302 TGWCNNIAWNVGPLTAY 318 (332)
T ss_dssp SSSEEEEEEEEESCTTG
T ss_pred cceeeEEEEEeCCCcHH
Confidence 99999999999999865
No 14
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=97.50 E-value=9.8e-05 Score=81.74 Aligned_cols=89 Identities=20% Similarity=0.306 Sum_probs=74.7
Q ss_pred CCceeeeeeCCCChHHHHHHHHHHHhhhcCcCCCCCccceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCccccc
Q 006941 472 DGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVR 551 (624)
Q Consensus 472 ~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~Pv~Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVR 551 (624)
.+-.+|=.=..++..|++++++++.. +.++..++++.+. |++ .||-=+.|+|++||.|++++||.|||.
T Consensus 291 gg~~~Wy~VP~e~~~k~e~l~~k~~~-------~~~~~~~~~~p~~---L~~-~gIPvyr~vQkpGd~Vi~~PgayH~v~ 359 (531)
T 3avr_A 291 PGDCEWFVVPEGYWGVLNDFCEKNNL-------NFLMGSWWPNLED---LYE-ANVPVYRFIQRPGDLVWINAGTVHWVQ 359 (531)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTTC-------CTTTSCBCCCHHH---HHH-TTCCCEEEEECTTCEEEECTTCEEEEE
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHcCC-------ChhhceeecCHHH---HHh-CCCCeEEEEECCCCEEEECCCceEEEE
Confidence 34568999999999999999988632 3445668887654 443 499999999999999999999999999
Q ss_pred cchhhHhhhhcccCccchHH
Q 006941 552 NLKSCIKAALDFVSPENVSQ 571 (624)
Q Consensus 552 NLkSCIKVAlDFVSPEnV~e 571 (624)
|+=-|+++|..|..|.-..-
T Consensus 360 n~G~~~n~awN~a~~~~~q~ 379 (531)
T 3avr_A 360 AIGWCNNIAWNVGPLTACQY 379 (531)
T ss_dssp ESSSEEEEEEEECCSSHHHH
T ss_pred ecceeeeeEEEeccCchHHH
Confidence 99999999999999996553
No 15
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=96.79 E-value=0.001 Score=73.08 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=72.4
Q ss_pred CCceeeeeeCCCChHHHHHHHHHHHhhhcCcCCCCCccceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCccccc
Q 006941 472 DGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVR 551 (624)
Q Consensus 472 ~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~Pv~Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVR 551 (624)
.+--+|=.=..+...+++++++++... .+.+.++.+.+. |+ +.||.=+.|+|++||.|++++||.|+|+
T Consensus 266 gg~c~WY~VP~e~~~k~e~l~~k~~~d-------~l~~~~~pspe~---L~-kagIPvyr~iQkPGdfVit~PgtyH~Vq 334 (510)
T 4ask_A 266 PGDCEWFAVHEHYWETISAFCDRHGVD-------YLTGSWWPILDD---LY-ASNIPVYRFVQRPGDLVWINAGTVHWVQ 334 (510)
T ss_dssp ESCEEEEEECGGGHHHHHHHHHHTTCC-------TTTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEECTTCEEEEE
T ss_pred CCceeEEEECHHHHHHHHHHHHHhCcc-------hhhccccCCHHH---HH-hCCCCeEEEEECCCCEEEECCCceEEEE
Confidence 345699999999999999999886433 345667776653 33 4699999999999999999999999999
Q ss_pred cchhhHhhhhcccCccch
Q 006941 552 NLKSCIKAALDFVSPENV 569 (624)
Q Consensus 552 NLkSCIKVAlDFVSPEnV 569 (624)
|.==|+++|-.|.-|-..
T Consensus 335 s~Gf~~niaWNvap~t~~ 352 (510)
T 4ask_A 335 ATGWCNNIAWNVGPLTAY 352 (510)
T ss_dssp ESSSEEEEEEEECBSSHH
T ss_pred ecCeeeeeEEEecCCCHH
Confidence 999999999999877643
No 16
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=96.25 E-value=0.0035 Score=66.38 Aligned_cols=92 Identities=21% Similarity=0.230 Sum_probs=77.6
Q ss_pred eeeeeeCCCChHHHHHHHHHHHhhhcCcCCCCC--ccceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccc
Q 006941 475 AVWDIFRRQDISKLQDYLKKHFREFRHIHCCPV--QQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRN 552 (624)
Q Consensus 475 AlWDIFRreDvpKLreyL~kh~~Ef~h~~~~Pv--~Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRN 552 (624)
-+|=.-..++..|+++++++.+.+.- ..|... ++++.++.+. |+ +.||.-.+++|++||.|++-.|+=|.|.|
T Consensus 210 K~WY~VP~~~~~kfE~l~k~~~p~~~-~~c~~fL~h~~~lisP~~---L~-~~GIpv~~~vQ~pGEfViTfP~aYH~gfn 284 (354)
T 3dxt_A 210 KTWYVVPPEHGQRLERLARELFPGSS-RGCGAFLRHKVALISPTV---LK-ENGIPFNRITQEAGEFMVTFPYGYHAGFN 284 (354)
T ss_dssp EEEEEECGGGHHHHHHHHHHHSHHHH-HHCTTGGGGCCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTTCEEEEEE
T ss_pred eEEEEeCHHHHHHHHHHHHHhCchhh-hhcHHHHhcCcccCCHHH---HH-HCCCceEEEEeCCCcEEEECCCceEEEee
Confidence 49999999999999999999875421 123332 5678888873 44 47999999999999999999999999999
Q ss_pred chhhHhhhhcccCccchHH
Q 006941 553 LKSCIKAALDFVSPENVSQ 571 (624)
Q Consensus 553 LkSCIKVAlDFVSPEnV~e 571 (624)
+--|+..|..|..|+=+..
T Consensus 285 ~Gfn~aEAvNFA~~~Wl~~ 303 (354)
T 3dxt_A 285 HGFNCAEAINFATPRWIDY 303 (354)
T ss_dssp SSSEEEEEEEECCGGGHHH
T ss_pred ccccHhHhhccCcHHHHHh
Confidence 9999999999999997764
No 17
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=95.57 E-value=0.012 Score=62.61 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=74.0
Q ss_pred eeeeeeCCCChHHHHHHHHHHHhhhcCcCCCCC--ccceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccccc
Q 006941 475 AVWDIFRRQDISKLQDYLKKHFREFRHIHCCPV--QQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRN 552 (624)
Q Consensus 475 AlWDIFRreDvpKLreyL~kh~~Ef~h~~~~Pv--~Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRN 552 (624)
-+|=.-..++..|+++++++++.+.-. .|..+ +.++.++.. .|+ +.||.-.+++|++||.|++=.|+=|.|.|
T Consensus 253 K~WY~VP~~~~~kfE~l~k~~~p~~~~-~c~~fL~h~~~lisP~---~L~-~~GIpv~r~vQ~pGEfViTfP~aYH~gfn 327 (373)
T 3opt_A 253 KQWYSIPQEDRFKFYKFMQEQFPEEAK-NCPEFLRHKMFLASPK---LLQ-ENGIRCNEIVHHEGEFMITYPYGYHAGFN 327 (373)
T ss_dssp EEEEECCGGGHHHHHHHHHHSSHHHHS-SCSSCTTTSCEEECHH---HHH-TTTCCCEEEEECTTCEEEECTTCCEEEEE
T ss_pred eEEEEeCHHHHHHHHHHHHHhChhhhh-hCHHHhhCCcccCCHH---HHH-hcCCceEEEEECCCCEEEECCCceEEEEe
Confidence 499999999999999999998765221 33332 567888885 354 47999999999999999999999999999
Q ss_pred chhhHhhhhcccCccchH
Q 006941 553 LKSCIKAALDFVSPENVS 570 (624)
Q Consensus 553 LkSCIKVAlDFVSPEnV~ 570 (624)
+=-|+..|..|..|+=+.
T Consensus 328 ~Gfn~aEAvNFA~~~Wl~ 345 (373)
T 3opt_A 328 YGYNLAESVNFALEEWLP 345 (373)
T ss_dssp SSSEEEEEEEECCC----
T ss_pred cCccHHHHHccCcHHHHH
Confidence 999999999999987654
No 18
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=95.48 E-value=0.013 Score=61.25 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=52.9
Q ss_pred CcceEEEeecCCeEEecCCCccccccc--hhhHhhhhcccCccchHHHHHH--------HHHhhcCCCcccCccchhhHH
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNL--KSCIKAALDFVSPENVSQCVRL--------TEEFRLLPPNHRAKEDKLEVK 596 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNL--kSCIKVAlDFVSPEnV~ec~rL--------teEfR~Lp~~H~akeDKLeVK 596 (624)
..++.++-.+||++|||+|.+|||+++ ..|+.|.+- +| +..+-+.- ..+||.||..... .-=++.
T Consensus 215 ~~~~~~~L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~--~~-~~~dll~~~l~~~~~~~~~~r~lp~~~~~--~~~~~~ 289 (342)
T 1vrb_A 215 PDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFG--QP-AWLDLMLAALRKKLISDNRFRELAVNHQS--LHESSK 289 (342)
T ss_dssp CSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEEC--CC-BHHHHHHHHHHHHHTTSGGGGSBCCCTTS--SCHHHH
T ss_pred CCceEEEECCCcEEEeCCCccEEEEECCCCceEEEEEC--CC-cHHHHHHHHHHHHHHhCHHhhhCCCcccc--Cchhhh
Confidence 678999999999999999999999999 468888777 44 33332221 2378888765421 112344
Q ss_pred HHHHHHHHHHHHHhC
Q 006941 597 KMILYAVSQAVKDIS 611 (624)
Q Consensus 597 km~l~A~~~Av~~l~ 611 (624)
.-+.-.+.++++.|.
T Consensus 290 ~~~~~~~~~ll~~l~ 304 (342)
T 1vrb_A 290 SELNGYLESLIQTLS 304 (342)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555543
No 19
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=95.16 E-value=0.017 Score=61.70 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=77.0
Q ss_pred ceeeeeeCCCChHHHHHHHHHHHhhhcCcCCCC-C-ccceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCccccc
Q 006941 474 GAVWDIFRRQDISKLQDYLKKHFREFRHIHCCP-V-QQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVR 551 (624)
Q Consensus 474 GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~P-v-~Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVR 551 (624)
--.|=.=.+++..|+++++++++.+.-. .|.- + +.++.++.+. |+ +.||.-.+++|++||.|++=.|+=|.|.
T Consensus 227 pK~WY~VP~~~~~kfE~l~~~~~P~~~~-~~~~~L~h~~~~isP~~---L~-~~GIpv~r~vQ~pGEfViTfP~aYH~gf 301 (381)
T 2ox0_A 227 PKSWYSVPPEHGKRLERLAKGFFPGSAQ-SCEAFLRHKMTLISPLM---LK-KYGIPFDKVTQEAGEFMITFPYGYHAGF 301 (381)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHSHHHHH-HCTTGGGGSCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTTCEEEEE
T ss_pred ceEEEecCHHHHHHHHHHHHHhChhhhh-cchHHhhccccccCHHH---HH-HCCCceEEEEecCCCEEEECCCcEEEee
Confidence 4599999999999999999998765321 2322 2 5678888854 43 4699999999999999999999999999
Q ss_pred cchhhHhhhhcccCccchHH
Q 006941 552 NLKSCIKAALDFVSPENVSQ 571 (624)
Q Consensus 552 NLkSCIKVAlDFVSPEnV~e 571 (624)
|+=-|+..|..|..|+=+..
T Consensus 302 n~GfN~aEAvNFA~~~Wl~~ 321 (381)
T 2ox0_A 302 NHGFNCAESTNFATRRWIEY 321 (381)
T ss_dssp ECSSEEEEEEEECCTTHHHH
T ss_pred cCcccHHHHhccCcHHHHHH
Confidence 99999999999999886654
No 20
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=92.91 E-value=0.03 Score=48.74 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEeecCCeEEecCCCccccccch
Q 006941 532 FIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 532 f~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
+.=+.||.|+||||+||+++|.-
T Consensus 75 ~~l~~Gd~i~ipa~~~H~~~n~~ 97 (112)
T 2opk_A 75 RVMRPGDWLHVPAHCRHRVAWTD 97 (112)
T ss_dssp EEECTTEEEEECTTCCEEEEEEC
T ss_pred EEECCCCEEEECCCCcEEEEeCC
Confidence 45578999999999999999975
No 21
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=92.27 E-value=0.045 Score=46.95 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=20.3
Q ss_pred EEeecCCeEEecCCCccccccch
Q 006941 532 FIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 532 f~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
+.-..||++|||+|.+|++.|.-
T Consensus 61 ~~l~~G~~~~ip~G~~H~~~N~g 83 (98)
T 3lag_A 61 AQLKTGRSYARKAGVQHDVRNES 83 (98)
T ss_dssp CCBCTTCCEEECTTCEEEEBCCS
T ss_pred EEecCCcEEEEcCCCcEECEECC
Confidence 44578999999999999999974
No 22
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=92.22 E-value=0.038 Score=48.07 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=29.7
Q ss_pred CCcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCcc
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 567 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 567 (624)
-|+.=++.=..||+++||+|.||+++|...+. +.+-+|.|.
T Consensus 70 ~i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~-~~~~~v~p~ 110 (114)
T 3fjs_A 70 GVDGAQRRLHQGDLLYLGAGAAHDVNAITNTS-LLVTVVLVD 110 (114)
T ss_dssp EETTEEEEECTTEEEEECTTCCEEEEESSSEE-EEEEEECC-
T ss_pred EECCEEEEECCCCEEEECCCCcEEEEeCCCcE-EEEEEEeCC
Confidence 34445778889999999999999999997653 333444443
No 23
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=91.93 E-value=0.047 Score=46.37 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=28.7
Q ss_pred ceEEEeecCCeEEecCCCccccccchhhHhhhhcccCcc
Q 006941 529 PWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 567 (624)
Q Consensus 529 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 567 (624)
.=++.-..||+++||+|+||+++|...|. .+.+.+|.
T Consensus 71 ~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~v~~p~ 107 (116)
T 2pfw_A 71 GVIKVLTAGDSFFVPPHVDHGAVCPTGGI--LIDTFSPA 107 (116)
T ss_dssp TEEEEECTTCEEEECTTCCEEEEESSCEE--EEEEEESC
T ss_pred CEEEEeCCCCEEEECcCCceeeEeCCCcE--EEEEECCc
Confidence 33677889999999999999999998763 34445553
No 24
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=91.71 E-value=0.078 Score=44.40 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=22.2
Q ss_pred eEEEeecCCeEEecCCCccccccchh
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
=++.=..||+|+||||.||+++|.-+
T Consensus 59 ~~~~l~~Gd~~~~p~~~~H~~~N~g~ 84 (97)
T 2fqp_A 59 VTSQLTRGVSYTRPEGVEHNVINPSD 84 (97)
T ss_dssp EEEEECTTCCEEECTTCEEEEECCSS
T ss_pred EEEEEcCCCEEEeCCCCcccCEeCCC
Confidence 34566789999999999999999764
No 25
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=91.53 E-value=0.054 Score=47.59 Aligned_cols=41 Identities=27% Similarity=0.182 Sum_probs=30.1
Q ss_pred CcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCcc
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 567 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 567 (624)
+..=++.=..||+|+||+|+||+++|....--+.+-+++|.
T Consensus 76 ~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~~ 116 (145)
T 3ht1_A 76 DQGRTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPCE 116 (145)
T ss_dssp GGTEEEEECTTCEEEECTTCCBEEECCTTCCEEEEEEEESC
T ss_pred ECCEEEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEECCC
Confidence 34456778899999999999999999865433444455554
No 26
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=91.48 E-value=0.036 Score=46.29 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=27.8
Q ss_pred ceEEEeecCCeEEecCCCccccccchhhHhhhhcccCc
Q 006941 529 PWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSP 566 (624)
Q Consensus 529 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 566 (624)
.=++.-..||+++||+|.+|+++|...|. .+..++|
T Consensus 73 ~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~~~~p 108 (110)
T 2q30_A 73 DAVIPAPRGAVLVAPISTPHGVRAVTDMK--VLVTIAP 108 (110)
T ss_dssp GCEEEECTTEEEEEETTSCEEEEESSSEE--EEEEEES
T ss_pred CEEEEECCCCEEEeCCCCcEEEEEcCCcE--EEEEECC
Confidence 34677889999999999999999987752 3444444
No 27
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=91.22 E-value=0.051 Score=47.00 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=28.1
Q ss_pred eEEEeecCCeEEecCCCccccccchhhHhhhhcccCc
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSP 566 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 566 (624)
=++.=..||+|+||+|+||+++|..+.--+.+.+++|
T Consensus 79 ~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p 115 (125)
T 3h8u_A 79 IVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAP 115 (125)
T ss_dssp CEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEES
T ss_pred eEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECC
Confidence 3566689999999999999999986543344555555
No 28
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=90.65 E-value=0.073 Score=45.36 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=26.2
Q ss_pred CCcceEEEeecCCeEEecCCCccccccchhhH
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCI 557 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 557 (624)
.|..=++.=..||+++||||.||.++|...|.
T Consensus 72 ~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~ 103 (114)
T 2ozj_A 72 TFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFK 103 (114)
T ss_dssp EETTEEEEECTTCEEEECTTCCBEEEEEEEEE
T ss_pred EECCEEEEecCCCEEEECCCCcEEEEeCCCcE
Confidence 34455677889999999999999999976553
No 29
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=90.51 E-value=0.069 Score=53.35 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=38.9
Q ss_pred EEEeecCCeEEecCCCccccccchhhH-hh---------hhccc-CccchHHHHHHHHHhh
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKSCI-KA---------ALDFV-SPENVSQCVRLTEEFR 580 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkSCI-KV---------AlDFV-SPEnV~ec~rLteEfR 580 (624)
++.=..||.||||+|+||..+|.-.-- ++ +-||. +|..+.+|++...+..
T Consensus 103 ~~~l~~GD~i~iP~g~~H~~~N~~~~~~~~~l~~~~~~~~~~~~~~p~~~e~~f~~l~~~~ 163 (239)
T 2xlg_A 103 SIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVFVWMRNEVAPDFPYHDGGMREYFQAVGPRI 163 (239)
T ss_dssp EEECCTTEEEEECTTEEEEEECCSSSCEEEEEEEEECSSCTTCSCTTCSHHHHHHHHSCBC
T ss_pred EEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEEEecccChhhccCcchHHHHHHHhhhhc
Confidence 888899999999999999999976531 22 22332 8888999998887654
No 30
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=90.38 E-value=0.056 Score=44.14 Aligned_cols=26 Identities=42% Similarity=0.590 Sum_probs=22.3
Q ss_pred eEEEeecCCeEEecCCCccccccchh
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
=++.=..||+++||+|++|+++|...
T Consensus 67 ~~~~l~~Gd~~~ip~~~~H~~~~~~~ 92 (105)
T 1v70_A 67 EEALLAPGMAAFAPAGAPHGVRNESA 92 (105)
T ss_dssp EEEEECTTCEEEECTTSCEEEECCSS
T ss_pred EEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 35667899999999999999999753
No 31
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=90.32 E-value=0.12 Score=44.55 Aligned_cols=40 Identities=30% Similarity=0.396 Sum_probs=30.6
Q ss_pred CcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCcc
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 567 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 567 (624)
|..-++.=..||+|+||+|+||+++|... --+.+.+++|-
T Consensus 76 ~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v~~p~ 115 (126)
T 4e2g_A 76 IGEETRVLRPGMAYTIPGGVRHRARTFED-GCLVLDIFSPP 115 (126)
T ss_dssp ETTEEEEECTTEEEEECTTCCEEEECCTT-CEEEEEEEESC
T ss_pred ECCEEEEeCCCCEEEECCCCcEEeEECCC-CEEEEEEECCC
Confidence 34456777899999999999999999987 22455566664
No 32
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=90.11 E-value=0.12 Score=42.53 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=22.3
Q ss_pred EEEeecCCeEEecCCCccccccchhh
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKSC 556 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkSC 556 (624)
++.=..||+++||+|.+|+++|...|
T Consensus 69 ~~~l~~Gd~~~ip~~~~H~~~~~~~~ 94 (102)
T 3d82_A 69 NITLQAGEMYVIPKGVEHKPMAKEEC 94 (102)
T ss_dssp EEEEETTEEEEECTTCCBEEEEEEEE
T ss_pred EEEEcCCCEEEECCCCeEeeEcCCCC
Confidence 55567999999999999999998654
No 33
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=89.77 E-value=0.11 Score=44.37 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=25.5
Q ss_pred EeecCCeEEecCCCccccccchhh--HhhhhcccCcc
Q 006941 533 IQKLGEAVFVPAGCPHQVRNLKSC--IKAALDFVSPE 567 (624)
Q Consensus 533 ~Q~lGEAVFIPAGCPHQVRNLkSC--IKVAlDFVSPE 567 (624)
.=..||+++||+|.||+++|..+. .-+.+.|-+|+
T Consensus 69 ~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~~~ 105 (117)
T 2b8m_A 69 NYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPHPK 105 (117)
T ss_dssp EEETTCEEEECTTCEEEEECCSSSEEEEEEEECSCGG
T ss_pred EeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCCC
Confidence 567899999999999999998653 33334344444
No 34
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=89.67 E-value=0.097 Score=45.36 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=24.7
Q ss_pred ceEEEeecCCeEEecCCCccccccchhhH
Q 006941 529 PWTFIQKLGEAVFVPAGCPHQVRNLKSCI 557 (624)
Q Consensus 529 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 557 (624)
.-++.=..||+|+||+|.||+.+|...+-
T Consensus 67 g~~~~l~~GD~i~ip~g~~H~~~n~~~~~ 95 (101)
T 1o5u_A 67 GKKYVIEKGDLVTFPKGLRCRWKVLEPVR 95 (101)
T ss_dssp CCEEEEETTCEEEECTTCEEEEEEEEEEE
T ss_pred CCEEEECCCCEEEECCCCcEEEEeCCCee
Confidence 44678899999999999999999976543
No 35
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=89.55 E-value=0.11 Score=44.00 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=25.4
Q ss_pred CcceEEEeecCCeEEecCCCccccccchhhH
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSCI 557 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 557 (624)
++.=++.=..||+++||+|.||+++|...|.
T Consensus 75 ~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~ 105 (115)
T 1yhf_A 75 IDQETYRVAEGQTIVMPAGIPHALYAVEAFQ 105 (115)
T ss_dssp ETTEEEEEETTCEEEECTTSCEEEEESSCEE
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEECCCce
Confidence 3445677889999999999999999987543
No 36
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=88.82 E-value=0.15 Score=42.96 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=23.4
Q ss_pred eEEEeecCCeEEecCCCccccccchhh
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNLKSC 556 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNLkSC 556 (624)
=++.=..||+++||+|.||..+|...|
T Consensus 67 ~~~~l~~Gd~~~ip~~~~H~~~~~~~~ 93 (107)
T 2i45_A 67 GSMTIREGEMAVVPKSVSHRPRSENGC 93 (107)
T ss_dssp CEEEECTTEEEEECTTCCEEEEEEEEE
T ss_pred cEEEECCCCEEEECCCCcEeeEeCCCe
Confidence 367788999999999999999997654
No 37
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=88.71 E-value=0.13 Score=47.85 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=28.6
Q ss_pred CcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCcc
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 567 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 567 (624)
|..=++.=..||+||||+|++|+++|..+---+-+-.++|+
T Consensus 79 v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~ 119 (156)
T 3kgz_A 79 VGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAA 119 (156)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred ECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence 33446677889999999999999999865322233444444
No 38
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=88.45 E-value=0.12 Score=43.10 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=28.1
Q ss_pred ceEEEeecCCeEEecCCCccccccchhhHhhhhcccCcc
Q 006941 529 PWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 567 (624)
Q Consensus 529 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 567 (624)
.=++.=..||+++||+|.+|+.+|..+.--+.+-+++|.
T Consensus 61 ~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~~ 99 (113)
T 2gu9_A 61 GHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPP 99 (113)
T ss_dssp TEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEESC
T ss_pred CEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCC
Confidence 346777899999999999999999864322334444554
No 39
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=88.43 E-value=0.14 Score=44.15 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEeecCCeEEecCCCccccccchh
Q 006941 532 FIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 532 f~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
..=..||++++|||.+|+++|--+
T Consensus 61 ~~l~aGd~~~~p~G~~H~~~N~g~ 84 (98)
T 2ozi_A 61 AQLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CCBCTTCCEEECTTCEEEEEECSS
T ss_pred EEECCCCEEEECCCCceeCEECCC
Confidence 345789999999999999999754
No 40
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=88.22 E-value=0.13 Score=48.07 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=29.4
Q ss_pred CcceEEEeecCCeEEecCCCccccccch-hhHhhhhcccCcc
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLK-SCIKAALDFVSPE 567 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLk-SCIKVAlDFVSPE 567 (624)
|..=++.=..||+||||+|+||+++|.. +---+.+-+++|+
T Consensus 91 i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~ 132 (167)
T 3ibm_A 91 LDDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD 132 (167)
T ss_dssp ETTEEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred ECCEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence 3444777799999999999999999987 3222333445554
No 41
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=88.17 E-value=0.13 Score=53.51 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=34.2
Q ss_pred EEEeecCCeEEecCCCccccccchhhHhhhhcccCc-cchHH
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSP-ENVSQ 571 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP-EnV~e 571 (624)
++.=+.||+||||||.||+++|.... +..+=|.++ ..++.
T Consensus 292 ~~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~~~g~~g~~~ 332 (350)
T 1juh_A 292 ATELGSGDVAFIPGGVEFKYYSEAYF-SKVLFVSSGSDGLDQ 332 (350)
T ss_dssp CEEECTTCEEEECTTCCEEEEESSSS-EEEEEEEESSSSHHH
T ss_pred EEEeCCCCEEEECCCCCEEEEecCCe-EEEEEEecCccchhh
Confidence 56778999999999999999998766 777888888 77665
No 42
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=87.67 E-value=0.24 Score=43.83 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.3
Q ss_pred ceEEEeecCCeEEecCCCccccccc
Q 006941 529 PWTFIQKLGEAVFVPAGCPHQVRNL 553 (624)
Q Consensus 529 pWtf~Q~lGEAVFIPAGCPHQVRNL 553 (624)
.=++.=..||+|+||||++|..+|.
T Consensus 76 g~~~~l~~GD~v~ip~g~~H~~~~~ 100 (119)
T 3lwc_A 76 GETVTAGPGEIVYMPKGETVTIRSH 100 (119)
T ss_dssp TEEEEECTTCEEEECTTCEEEEEEE
T ss_pred CEEEEECCCCEEEECCCCEEEEEcC
Confidence 4467788999999999999999997
No 43
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=87.64 E-value=0.14 Score=50.21 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=30.7
Q ss_pred CcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCcc
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 567 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 567 (624)
|..=++.=..||+|+||+|+||+++|.-.---+.+..++|-
T Consensus 181 i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~ 221 (243)
T 3h7j_A 181 VEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFPP 221 (243)
T ss_dssp ETTEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred ECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence 34446678899999999999999999855444456666664
No 44
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=87.35 E-value=0.19 Score=45.88 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=23.3
Q ss_pred eEEEeecCCeEEecCCCccccccch
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
-++.=..||+|+||+|+||+++|..
T Consensus 88 ~~~~l~~Gd~i~ip~~~~H~~~n~~ 112 (163)
T 1lr5_A 88 QEIPFFQNTTFSIPVNDPHQVWNSD 112 (163)
T ss_dssp EEEEECTTEEEEECTTCCEEEECCC
T ss_pred EEEEeCCCCEEEECCCCcEEeEeCC
Confidence 7888899999999999999999986
No 45
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=87.18 E-value=0.3 Score=43.96 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.6
Q ss_pred eEEEeecCCeEEecCCCccccccchh
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
.++.=..||+|+||+|.||+++|..+
T Consensus 88 ~~~~l~~Gd~i~ip~g~~H~~~n~~~ 113 (148)
T 2oa2_A 88 FQEEVFDDYAILIPAGTWHNVRNTGN 113 (148)
T ss_dssp EEEEEETTCEEEECTTCEEEEEECSS
T ss_pred eeEEECCCCEEEECCCCcEEEEECCC
Confidence 35777899999999999999999753
No 46
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=86.60 E-value=0.13 Score=48.01 Aligned_cols=43 Identities=12% Similarity=-0.009 Sum_probs=32.5
Q ss_pred hCCcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccc
Q 006941 525 YGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPEN 568 (624)
Q Consensus 525 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 568 (624)
+.|..=++.=..||+|+||+|.||+.+|.-+.-- .+-++.|..
T Consensus 139 ~~~~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~~~~ 181 (192)
T 1y9q_A 139 VFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIVAYPR 181 (192)
T ss_dssp EEETTEEEEECTTCEEEEECSSSEEEEESSSCEE-EEEEEECCC
T ss_pred EEECCEEEEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEEecCc
Confidence 3455667788999999999999999999854222 566676654
No 47
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=86.31 E-value=0.24 Score=42.87 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=24.0
Q ss_pred CcceEEEeecCCeEEecCCCccccccch
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
|..-++.=..||+|+||+|.||+.+|..
T Consensus 63 i~~~~~~l~~Gd~i~i~~~~~H~~~~~~ 90 (125)
T 3cew_A 63 IDGEKIELQAGDWLRIAPDGKRQISAAS 90 (125)
T ss_dssp ETTEEEEEETTEEEEECTTCCEEEEEBT
T ss_pred ECCEEEEeCCCCEEEECCCCcEEEEcCC
Confidence 3445678899999999999999999984
No 48
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=85.88 E-value=0.2 Score=46.94 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=32.3
Q ss_pred CcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccch
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENV 569 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV 569 (624)
|..=++.=..||+||||+|++|..+|...|..+++ +.|-+.
T Consensus 99 i~g~~~~l~~GD~i~iP~G~~h~~~n~~~a~~l~V--~~P~~~ 139 (151)
T 4axo_A 99 IDGRKVSASSGELIFIPKGSKIQFSVPDYARFIYV--TYPADW 139 (151)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE--EECSCC
T ss_pred ECCEEEEEcCCCEEEECCCCEEEEEeCCCEEEEEE--ECCCCc
Confidence 34557888999999999999999999987876665 445443
No 49
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=85.36 E-value=0.39 Score=41.97 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=28.8
Q ss_pred eEEEeecCCeEEecCCCccccccchhhHhhhhcccCccch
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENV 569 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV 569 (624)
-++.-..||+++||+|.||..+|...-. ..+-+++|...
T Consensus 83 ~~~~l~~Gd~~~ip~g~~H~~~~~~~~~-~~l~~~~p~~~ 121 (134)
T 2o8q_A 83 GAVMLEAGGSAFQPPGVRHRELRHSDDL-EVLEIVSPAGF 121 (134)
T ss_dssp EEEEEETTCEEECCTTCCEEEEEECTTC-EEEEEESSTTC
T ss_pred EEEEecCCCEEEECCCCcEEeEeCCCCe-EEEEEECCCch
Confidence 5678899999999999999999965422 33445566543
No 50
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=85.17 E-value=0.24 Score=44.98 Aligned_cols=38 Identities=16% Similarity=0.063 Sum_probs=28.0
Q ss_pred ceEEEeecCCeEEecCC-CccccccchhhHhhhhcccCc
Q 006941 529 PWTFIQKLGEAVFVPAG-CPHQVRNLKSCIKAALDFVSP 566 (624)
Q Consensus 529 pWtf~Q~lGEAVFIPAG-CPHQVRNLkSCIKVAlDFVSP 566 (624)
.=++.=..||+|+||+| ++|+++|.-.---+.+-+.+|
T Consensus 85 ~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~p 123 (162)
T 3l2h_A 85 NDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQR 123 (162)
T ss_dssp TEEEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEEC
T ss_pred CEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEECC
Confidence 34678889999999998 999999975533334444444
No 51
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=85.03 E-value=0.26 Score=47.82 Aligned_cols=30 Identities=33% Similarity=0.566 Sum_probs=24.6
Q ss_pred CcceEEEeecCCeEEecCCCcccccc-chhh
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRN-LKSC 556 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRN-LkSC 556 (624)
|..=++.=..||+++||||+||.++| ...|
T Consensus 188 i~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~ 218 (227)
T 3rns_A 188 VDGKPFIVKKGESAVLPANIPHAVEAETENF 218 (227)
T ss_dssp ETTEEEEEETTEEEEECTTSCEEEECCSSCE
T ss_pred ECCEEEEECCCCEEEECCCCcEEEEeCCCCE
Confidence 34446778899999999999999999 6554
No 52
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=84.72 E-value=0.46 Score=44.58 Aligned_cols=29 Identities=17% Similarity=0.025 Sum_probs=24.0
Q ss_pred CcceEEEeecCCeEEecCCCccccccchh
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
|..=++.=..||+|+||+|++|+++|...
T Consensus 88 v~g~~~~l~~GD~i~ip~g~~H~~~n~~~ 116 (166)
T 3jzv_A 88 VGRAVSAVAPYDLVTIPGWSWHQFRAPAD 116 (166)
T ss_dssp ETTEEEEECTTCEEEECTTCCEEEECCTT
T ss_pred ECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 34446777899999999999999999654
No 53
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=83.99 E-value=0.54 Score=40.51 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=34.6
Q ss_pred CcceEEEeecCCeEEecCCCccccccch--hhHhhhhcccCccchHHHHHHHHHhhcCCC
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLK--SCIKAALDFVSPENVSQCVRLTEEFRLLPP 584 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~ 584 (624)
|..=++.=..||+++||+|++|+++|.. .|.-+++ +++|+-+. .+..+...-|.
T Consensus 69 i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i-~f~~~~~~---~~~~~~~~~~~ 124 (128)
T 4i4a_A 69 INDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI-WWDKESTL---NFLTRLEQDHH 124 (128)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEE-EECHHHHH---HHHHHHHHC--
T ss_pred ECCEEEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE-EECHHHHH---HHHHhcccccc
Confidence 4455778899999999999999999963 2333333 34555443 45555555444
No 54
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=83.93 E-value=0.23 Score=43.47 Aligned_cols=28 Identities=25% Similarity=0.127 Sum_probs=23.3
Q ss_pred cceEEEeecCCeEEecCCCccccccchh
Q 006941 528 EPWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
..=++.=..||+++||+|.||+.+|..+
T Consensus 84 ~~~~~~l~~Gd~i~ip~g~~H~~~~~~~ 111 (126)
T 1vj2_A 84 EQGEETVEEGFYIFVEPNEIHGFRNDTD 111 (126)
T ss_dssp SSCEEEEETTEEEEECTTCCEEEECCSS
T ss_pred CCEEEEECCCCEEEECCCCcEEeEeCCC
Confidence 3445677899999999999999999763
No 55
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=83.27 E-value=0.32 Score=46.22 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=30.4
Q ss_pred cceEEEeecCCeEEecCCCccccccchhhHhhhhcccCcc
Q 006941 528 EPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 567 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 567 (624)
+.+++.=..||+|+||+|.||+.+|.-+.--+.+.+++|.
T Consensus 117 ~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~~ 156 (190)
T 1x82_A 117 DAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD 156 (190)
T ss_dssp CEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred cEEEEEECCCcEEEECCCCeEEEEECCcccEEEEEEECCC
Confidence 5677889999999999999999999765332344455554
No 56
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=81.63 E-value=0.36 Score=48.51 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=37.9
Q ss_pred CcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHHHH
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLT 576 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLt 576 (624)
|..-++.=..||.++||+|+||+.+|... --..+-+++|....+.++-.
T Consensus 254 i~~~~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~~~~~~~~~~~ 302 (337)
T 1y3t_A 254 TDGQEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVPGLFEPFFRTL 302 (337)
T ss_dssp ETTEEEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEESSTTTHHHHHH
T ss_pred ECCEEEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcCccHHHHHHHh
Confidence 34457888999999999999999999876 33445567888887665543
No 57
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3
Probab=81.58 E-value=0.49 Score=48.97 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=16.0
Q ss_pred EEeecCCeEEecCCCcccc
Q 006941 532 FIQKLGEAVFVPAGCPHQV 550 (624)
Q Consensus 532 f~Q~lGEAVFIPAGCPHQV 550 (624)
+.=++|||+|||||.||=.
T Consensus 160 v~l~pGd~~~ipaGt~HA~ 178 (319)
T 1qwr_A 160 IKIKPGDFYYVPSGTLHAL 178 (319)
T ss_dssp EECCTTCEEEECTTCCEEE
T ss_pred EEcCCCCEEEcCCCCceEe
Confidence 4446899999999999974
No 58
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=81.26 E-value=0.51 Score=41.77 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=23.8
Q ss_pred CcceEEEeecCCeEEecCCCccccccch
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
|..-++.=..||+++||+|.||+.+|.-
T Consensus 93 i~~~~~~l~~Gd~i~i~~~~~H~~~n~~ 120 (133)
T 1o4t_A 93 DNGKDVPIKAGDVCFTDSGESHSIENTG 120 (133)
T ss_dssp ETTEEEEEETTEEEEECTTCEEEEECCS
T ss_pred ECCEEEEeCCCcEEEECCCCcEEeEECC
Confidence 3445677789999999999999999974
No 59
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=81.03 E-value=0.48 Score=46.78 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=24.1
Q ss_pred CCcceEEEeecCCeEEecCCCccccccchh
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
.|..=++.=..||+||||+|+||+.+|.-.
T Consensus 214 ~i~~~~~~l~~GD~i~~~~~~~H~~~n~g~ 243 (261)
T 1rc6_A 214 NLDNNWIPVKKGDYIFMGAYSLQAGYGVGR 243 (261)
T ss_dssp ESSSCEEEEETTCEEEECSSEEEEEEEC--
T ss_pred EECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 344557788999999999999999999744
No 60
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=80.94 E-value=0.55 Score=43.74 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=22.4
Q ss_pred eEEEeecCCeEEecCCCccccccc
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNL 553 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNL 553 (624)
=++.=..||+|+||+|.||+++|.
T Consensus 162 ~~~~l~~GD~~~~~~~~~H~~~n~ 185 (198)
T 2bnm_A 162 KEALLPTGASMFVEEHVPHAFTAA 185 (198)
T ss_dssp EEEEECTTCEEEECTTCCEEEEES
T ss_pred ccEEECCCCEEEeCCCCceEEEec
Confidence 678888999999999999999997
No 61
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3
Probab=80.84 E-value=0.54 Score=48.33 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.8
Q ss_pred EEeecCCeEEecCCCcccc
Q 006941 532 FIQKLGEAVFVPAGCPHQV 550 (624)
Q Consensus 532 f~Q~lGEAVFIPAGCPHQV 550 (624)
+.=++|||+|||||.||=.
T Consensus 160 v~l~pGd~~~ipaGt~HA~ 178 (300)
T 1zx5_A 160 FETTPYDTFVIRPGIPHAG 178 (300)
T ss_dssp EECCTTCEEEECTTCCEEE
T ss_pred eECCCCCEEEcCCCCceEc
Confidence 3447899999999999953
No 62
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=79.89 E-value=0.45 Score=46.18 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=35.3
Q ss_pred CCCCCccceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCccccccchhhHhhh
Q 006941 503 HCCPVQQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAA 560 (624)
Q Consensus 503 ~~~Pv~Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVA 560 (624)
|..|.++.+|+-.-- =++.|..=++.=..||.++||||.||-++|+..|+=+.
T Consensus 53 h~h~~~~~~~Vl~G~-----~~~~i~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~ 105 (227)
T 3rns_A 53 EAMLGNRYYYCFNGN-----GEIFIENNKKTISNGDFLEITANHNYSIEARDNLKLIE 105 (227)
T ss_dssp CSCSSCEEEEEEESE-----EEEEESSCEEEEETTEEEEECSSCCEEEEESSSEEEEE
T ss_pred cccCCCEEEEEEeCE-----EEEEECCEEEEECCCCEEEECCCCCEEEEECCCcEEEE
Confidence 334666665542211 01234455667788999999999999999998875443
No 63
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=79.82 E-value=0.65 Score=44.28 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=30.0
Q ss_pred cceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccc
Q 006941 528 EPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPEN 568 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 568 (624)
+-.++.=..||+++||+|.+|.++|.-.---+.+-+.++.+
T Consensus 117 ~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~ 157 (201)
T 1fi2_A 117 KLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQN 157 (201)
T ss_dssp CEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSC
T ss_pred eEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCC
Confidence 33477788999999999999999997543334445555554
No 64
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=79.74 E-value=0.54 Score=43.47 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=28.4
Q ss_pred cceEEEeecCCeEEecCC--CccccccchhhHhhhhcccCc
Q 006941 528 EPWTFIQKLGEAVFVPAG--CPHQVRNLKSCIKAALDFVSP 566 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAG--CPHQVRNLkSCIKVAlDFVSP 566 (624)
..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|
T Consensus 81 ~~~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p 121 (163)
T 3i7d_A 81 DQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTR 121 (163)
T ss_dssp TTEEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEEC
T ss_pred CCEEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECC
Confidence 334678889999999999 999999976533334444444
No 65
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=79.08 E-value=0.63 Score=41.72 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=25.0
Q ss_pred EEEeecCCeEEecCCCccccccchhhHhhh
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKSCIKAA 560 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVA 560 (624)
++.=..||+|+||+|.||..+|...+-|+-
T Consensus 88 ~~~l~~GD~~~ip~g~~h~~~~~~~~rK~y 117 (123)
T 3bcw_A 88 VHAVKAGDAFIMPEGYTGRWEVDRHVKKIY 117 (123)
T ss_dssp EEEEETTCEEEECTTCCCEEEEEEEEEEEE
T ss_pred EEEECCCCEEEECCCCeEEEEECCceeEEE
Confidence 355679999999999999999987766643
No 66
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=78.64 E-value=0.98 Score=42.96 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=25.2
Q ss_pred CcceEEEeecCCeEEecCCCccccccchh
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
|..=+|.=..||.++||||.||..+|.-+
T Consensus 125 l~g~~~~L~~Gds~~iP~g~~H~~~N~~d 153 (166)
T 2vpv_A 125 VCKNKFLSVKGSTFQIPAFNEYAIANRGN 153 (166)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEECSS
T ss_pred ECCEEEEEcCCCEEEECCCCCEEEEECCC
Confidence 45568888999999999999999999754
No 67
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=78.60 E-value=0.72 Score=46.00 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=25.0
Q ss_pred CCcceEEEeecCCeEEecCCCccccccchh
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
-|..-++.=..||+|+||||+||+.+|.-.
T Consensus 217 ~i~~~~~~l~~GD~i~i~~~~~H~~~n~~~ 246 (274)
T 1sef_A 217 NLDNEWYPVEKGDYIFMSAYVPQAAYAVGR 246 (274)
T ss_dssp EETTEEEEEETTCEEEECTTCCEEEEEECS
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 344456788999999999999999999754
No 68
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=78.55 E-value=0.63 Score=42.13 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=25.4
Q ss_pred EEeecCCeEEecCCCccccccchhhHhhhhcccCc
Q 006941 532 FIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSP 566 (624)
Q Consensus 532 f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 566 (624)
+.=..||+++||+|+||+.+|....--+.+-++.|
T Consensus 89 ~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~~ 123 (147)
T 2f4p_A 89 RILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQ 123 (147)
T ss_dssp EEEETTCEEEECTTCCEEEEEBTTBCEEEEEEECC
T ss_pred EEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence 56679999999999999999986532233334443
No 69
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Probab=76.78 E-value=0.84 Score=48.71 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=15.5
Q ss_pred EEeecCCeEEecCCCccc
Q 006941 532 FIQKLGEAVFVPAGCPHQ 549 (624)
Q Consensus 532 f~Q~lGEAVFIPAGCPHQ 549 (624)
+.=++|||+|||||.||=
T Consensus 242 v~l~pGd~~fipAG~~HA 259 (394)
T 2wfp_A 242 VKLNPGEAMFLFAETPHA 259 (394)
T ss_dssp EEECTTCEEEECTTCCEE
T ss_pred EECCCCCEEEcCCCCceE
Confidence 334899999999999996
No 70
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=76.73 E-value=0.7 Score=41.77 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=27.2
Q ss_pred cceEEEeecCCeEEecCCCccccccchhhHhhh
Q 006941 528 EPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAA 560 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVA 560 (624)
..=++.=+.||+++||+|.||..+|...|.++.
T Consensus 91 ~g~~~~l~~GD~i~~p~g~~h~~~~~~~~~~l~ 123 (133)
T 2pyt_A 91 EGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLY 123 (133)
T ss_dssp TTEEEEEETTCEEEECTTCEEEEEEEEEEEEEE
T ss_pred CCEEEEECCCcEEEECCCCEEEEEeCCCEEEEE
Confidence 345677889999999999999999987766554
No 71
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=76.37 E-value=0.91 Score=46.20 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=21.7
Q ss_pred CcceEEEeecCCeEEecCCCccccccc
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNL 553 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNL 553 (624)
+..=.+.=+.||++|||+||||+..|.
T Consensus 222 l~~~~~~V~~GD~i~~~~~~~h~~~n~ 248 (266)
T 4e2q_A 222 LGDNWYPVQAGDVIWMAPFVPQWYAAL 248 (266)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEeC
Confidence 333345667899999999999999986
No 72
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=75.80 E-value=1.3 Score=47.88 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=28.1
Q ss_pred HhCCcceEEEeecCCeEEecCCCccccccch
Q 006941 524 EYGIEPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 524 EyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
++|...+.++=.+||+.|||+|.+|+|+.+.
T Consensus 193 ~~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~ 223 (442)
T 2xdv_A 193 RIGRPVHEFMLKPGDLLYFPRGTIHQADTPA 223 (442)
T ss_dssp TSCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred hcCCcceEEEECCCcEEEECCCceEEEEecC
Confidence 3566789999999999999999999999986
No 73
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=75.68 E-value=0.92 Score=44.36 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=24.1
Q ss_pred CcceEEEeecCCeEE-ecCCCccccccchh
Q 006941 527 IEPWTFIQKLGEAVF-VPAGCPHQVRNLKS 555 (624)
Q Consensus 527 VEpWtf~Q~lGEAVF-IPAGCPHQVRNLkS 555 (624)
|..=++.=..||+|| ||+|+||+++|...
T Consensus 69 ~~~~~~~l~~Gd~i~~ip~~~~H~~~n~~~ 98 (243)
T 3h7j_A 69 VGDVTRKMTALESAYIAPPHVPHGARNDTD 98 (243)
T ss_dssp ETTEEEEEETTTCEEEECTTCCEEEEECSS
T ss_pred ECCEEEEECCCCEEEEcCCCCcEeeEeCCC
Confidence 334466778999997 99999999999876
No 74
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=75.43 E-value=0.74 Score=46.22 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=34.9
Q ss_pred CcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHH
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVR 574 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~r 574 (624)
|..-++.=..||.|+||+|.||..+|...- -..+.+++|....+-++
T Consensus 82 ~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~-~~~~~~~~p~~~~~~~~ 128 (337)
T 1y3t_A 82 LDGERYLLISGDYANIPAGTPHSYRMQSHR-TRLVSYTMKGNVAHLYS 128 (337)
T ss_dssp ETTEEEEECTTCEEEECTTCCEEEEECSTT-EEEEEEEETTSSTHHHH
T ss_pred ECCEEEEECCCCEEEECCCCcEEEEECCCC-eEEEEEECCCCHHHHHH
Confidence 345567888999999999999999998662 23455567777666543
No 75
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3
Probab=75.19 E-value=0.98 Score=48.98 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=15.6
Q ss_pred EEeecCCeEEecCCCccc
Q 006941 532 FIQKLGEAVFVPAGCPHQ 549 (624)
Q Consensus 532 f~Q~lGEAVFIPAGCPHQ 549 (624)
+.=++|||+|||||.||=
T Consensus 268 v~L~pGea~flpAg~~HA 285 (440)
T 1pmi_A 268 VGLNKGEAMFLQAKDPHA 285 (440)
T ss_dssp EEECTTCEEEECTTCCEE
T ss_pred EecCCCCEEecCCCCccc
Confidence 346789999999999995
No 76
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=74.63 E-value=0.69 Score=48.08 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=38.4
Q ss_pred eEEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHHHHHH
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEE 578 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteE 578 (624)
-++.=..||.|+||+|.||..+|.-.-. ..+-.++|....+.++-..+
T Consensus 94 ~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l~v~~p~~~~~~f~~l~~ 141 (350)
T 1juh_A 94 QTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMTGVIVPGGFEDLFYYLGT 141 (350)
T ss_dssp EEEEEETTCEEEECTTEEEEEEECSTTE-EEEEEEESSCTTHHHHHHSE
T ss_pred EEEEECCCCEEEECCCCcEEEEeCCCCC-EEEEEEcCccHHHHHHHhcc
Confidence 6788899999999999999999986544 66778889887766554433
No 77
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=74.19 E-value=1.4 Score=41.30 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.5
Q ss_pred ceEEEeecCCeEEecCCCccccccchh
Q 006941 529 PWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 529 pWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
.-++.=+.||+++||+|.||..+|.-+
T Consensus 82 ~~~~~l~~GDv~~~P~g~~H~~~N~g~ 108 (178)
T 1dgw_A 82 RDTYKLDQGDAIKIQAGTPFYLINPDN 108 (178)
T ss_dssp EEEEEEETTEEEEECTTCCEEEEECCS
T ss_pred cEEEEECCCCEEEECCCCeEEEEeCCC
Confidence 447778899999999999999999854
No 78
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=73.38 E-value=1.1 Score=42.54 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=23.3
Q ss_pred hCCcceEEEeecCCeEEecCCCcccccc
Q 006941 525 YGIEPWTFIQKLGEAVFVPAGCPHQVRN 552 (624)
Q Consensus 525 yGVEpWtf~Q~lGEAVFIPAGCPHQVRN 552 (624)
+-|..=++.=+.||+|+||+|++|++++
T Consensus 81 v~idge~~~l~~GD~v~IPpg~~H~i~g 108 (157)
T 4h7l_A 81 IELNGQSYPLTKLLAISIPPLVRHRIVG 108 (157)
T ss_dssp EEETTEEEECCTTEEEEECTTCCEEEES
T ss_pred EEECCEEEEeCCCCEEEECCCCeEeeEC
Confidence 3445557888999999999999999985
No 79
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=72.62 E-value=1.6 Score=43.92 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=24.1
Q ss_pred CcceEEEeecCCeEEecCCCccccccch
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
|..=++.=..||+++||||.||+++|.-
T Consensus 105 v~g~~~~L~~GD~i~ip~~~~H~~~N~g 132 (278)
T 1sq4_A 105 LQGQVHAMQPGGYAFIPPGADYKVRNTT 132 (278)
T ss_dssp ESSCEEEECTTEEEEECTTCCEEEECCS
T ss_pred ECCEEEEECCCCEEEECCCCcEEEEECC
Confidence 3455778889999999999999999984
No 80
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=71.76 E-value=1.3 Score=48.71 Aligned_cols=72 Identities=18% Similarity=0.366 Sum_probs=48.2
Q ss_pred CCCceeeeeeCCCChHHHHHHHHHHHhhhcCcCCCCCccceecCHHHHHHHHHHhCCcceEEEeecCCeEEecCCCcccc
Q 006941 471 ADGGAVWDIFRRQDISKLQDYLKKHFREFRHIHCCPVQQVFYLSSEHKAKLKQEYGIEPWTFIQKLGEAVFVPAGCPHQV 550 (624)
Q Consensus 471 ~~~GAlWDIFRreDvpKLreyL~kh~~Ef~h~~~~Pv~Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQV 550 (624)
-.|--.|-||.+.|...+ | .. .. . ..| +. .+.+-..+.++-.+||..|||.|.+|||
T Consensus 192 v~G~KrWrL~~P~~~~~~---l----p~---~~-~---~~~--~~-------~~~~~p~~e~~L~pGDvLYiP~g~~H~~ 248 (489)
T 4diq_A 192 LEGRKLWRVYRPRAPTEE---L----AL---TS-S---PNF--SQ-------DDLGEPVLQTVLEPGDLLYFPRGFIHQA 248 (489)
T ss_dssp EEECEEEEEECCSSGGGT---T----CS---SC-C---CCC--CG-------GGCCCCSEEEEECTTCEEEECTTCEEEE
T ss_pred EeeEEEEEEeCCCCcccc---C----CC---cc-c---ccC--Cc-------ccccCcceEEEECCCCEEEECCCCceEE
Confidence 357789999999886531 0 00 00 0 001 00 1235677999999999999999999999
Q ss_pred ccchh--hHhhhhcccC
Q 006941 551 RNLKS--CIKAALDFVS 565 (624)
Q Consensus 551 RNLkS--CIKVAlDFVS 565 (624)
+++.. +|.++.-+-.
T Consensus 249 ~s~~~~~SlhlTi~~~~ 265 (489)
T 4diq_A 249 ECQDGVHSLHLTLSTYQ 265 (489)
T ss_dssp EBCSSCCEEEEEEEECT
T ss_pred EecCCCceEEEeecccC
Confidence 99954 5666555544
No 81
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=70.21 E-value=2 Score=45.60 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=24.9
Q ss_pred CcceEEEeecCCeEEecCCCccccccc
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNL 553 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNL 553 (624)
|.+=++.=..||+|+||+|+.|+++|-
T Consensus 139 vdG~~~~~~~GD~v~iP~g~~H~~~N~ 165 (368)
T 3nw4_A 139 VNGDPVRMSRGDLLLTPGWCFHGHMND 165 (368)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEEC
T ss_pred ECCEEEEEeCCCEEEECCCCcEEeEeC
Confidence 677789999999999999999999995
No 82
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=70.13 E-value=1.5 Score=43.13 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=24.8
Q ss_pred CcceEEEeecCCeEEecCCCccccccchhh
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSC 556 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSC 556 (624)
|..=++.=..||+++||||.||+++|...|
T Consensus 83 ~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~ 112 (246)
T 1sfn_A 83 VGGETRTLREYDYVYLPAGEKHMLTAKTDA 112 (246)
T ss_dssp CSSCEEEECTTEEEEECTTCCCEEEEEEEE
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEeCCCE
Confidence 444467788999999999999999998544
No 83
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=70.09 E-value=1.5 Score=44.90 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=35.1
Q ss_pred EEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHHHHHHhhcCC
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLP 583 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp 583 (624)
++.=..||+++||+|+||+++|.-+---+.+-+++|.+... +.+++=++.+|
T Consensus 279 ~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 330 (361)
T 2vqa_A 279 VSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQS-IDLSTWLASNP 330 (361)
T ss_dssp EEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCC-EEHHHHHHTSC
T ss_pred EEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcce-eeHHHHhhhCC
Confidence 56778899999999999999998543224455556654332 23445566666
No 84
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=69.53 E-value=2.1 Score=45.90 Aligned_cols=29 Identities=21% Similarity=0.020 Sum_probs=25.9
Q ss_pred CCcceEEEeecCCeEEecCCCccccccch
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
-|.+-+|.-..||+||||+|++||+.|.-
T Consensus 328 ~V~ge~~~~~~GD~~~iP~g~~H~~~N~g 356 (394)
T 3bu7_A 328 IVGGKRFDWSEHDIFCVPAWTWHEHCNTQ 356 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEECC
T ss_pred EECCEEEEEeCCCEEEECCCCeEEeEeCC
Confidence 45678899999999999999999999964
No 85
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=68.16 E-value=1.9 Score=42.46 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=25.5
Q ss_pred HhCCcceEEEeecCCeEEecCCCccccccch
Q 006941 524 EYGIEPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 524 EyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
+|-+..=++.=..||.+|++|||||+.+|.-
T Consensus 198 ~~~~~~~~~~l~~GD~~~~~~~~pH~~~n~g 228 (246)
T 1sfn_A 198 LYKLEENYYPVTAGDIIWMGAHCPQWYGALG 228 (246)
T ss_dssp EEEETTEEEEEETTCEEEECTTCCEEEEEES
T ss_pred EEEECCEEEEcCCCCEEEECCCCCEEEEcCC
Confidence 3445566678889999999999999999964
No 86
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=66.99 E-value=2.5 Score=41.56 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=24.4
Q ss_pred CcceEEEeecCCeEEecCCCccccccchh
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
|..=++.=..||++++|||.||+.+|.-+
T Consensus 96 ~~~~~~~L~~Gd~~~~~~~~~H~~~N~~~ 124 (261)
T 1rc6_A 96 AEGKTFALSEGGYLYCPPGSLMTFVNAQA 124 (261)
T ss_dssp ETTEEEEEETTEEEEECTTCCCEEEECSS
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 34456788899999999999999999843
No 87
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=66.22 E-value=2.8 Score=43.33 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.2
Q ss_pred ceEEEeecCCeEEecCCCccccccchh
Q 006941 529 PWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 529 pWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
.-++.=..||+++||+|+||+++|.-+
T Consensus 300 ~~~~~l~~GD~~~ip~~~~H~~~n~~~ 326 (385)
T 1j58_A 300 ARTFNYQAGDVGYVPFAMGHYVENIGD 326 (385)
T ss_dssp EEEEEEESSCEEEECTTCBEEEEECSS
T ss_pred EEEEEEcCCCEEEECCCCeEEEEECCC
Confidence 346777899999999999999999754
No 88
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=65.50 E-value=2.7 Score=43.80 Aligned_cols=40 Identities=15% Similarity=-0.024 Sum_probs=29.7
Q ss_pred CcceEEEeecCCeEEecCCCccccccchhhHhhhhcccCc
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSP 566 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 566 (624)
|.+-++.=..||+|+||+|.+|+.+|.-.---+-++|..|
T Consensus 136 v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d~ 175 (354)
T 2d40_A 136 VDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDL 175 (354)
T ss_dssp ETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECH
T ss_pred ECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEECc
Confidence 4556788899999999999999999985422233555544
No 89
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=65.28 E-value=2.8 Score=41.69 Aligned_cols=29 Identities=10% Similarity=-0.015 Sum_probs=24.5
Q ss_pred CcceEEEeecCCeEEecCCCccccccchh
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
|..=++.=..||++++|||.||+.+|.-+
T Consensus 99 ~~~~~~~L~~GD~~~~~~~~~H~~~N~~~ 127 (274)
T 1sef_A 99 DGQETHELEAGGYAYFTPEMKMYLANAQE 127 (274)
T ss_dssp CSSCEEEEETTEEEEECTTSCCEEEESSS
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 44457788899999999999999999843
No 90
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=61.18 E-value=3.9 Score=42.63 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=24.6
Q ss_pred CcceEEEeecCCeEEecCCCccccccc
Q 006941 527 IEPWTFIQKLGEAVFVPAGCPHQVRNL 553 (624)
Q Consensus 527 VEpWtf~Q~lGEAVFIPAGCPHQVRNL 553 (624)
|.+-+|.=..||+++||+|++||++|-
T Consensus 303 v~~~~~~~~~GD~~~vP~~~~H~~~n~ 329 (354)
T 2d40_A 303 IGNETFSFSAKDIFVVPTWHGVSFQTT 329 (354)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred ECCEEEEEcCCCEEEECCCCeEEEEeC
Confidence 467889999999999999999999994
No 91
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=61.09 E-value=2.4 Score=42.13 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=23.2
Q ss_pred hCCc-ceEEEeecCCeEEecCCCccccccc
Q 006941 525 YGIE-PWTFIQKLGEAVFVPAGCPHQVRNL 553 (624)
Q Consensus 525 yGVE-pWtf~Q~lGEAVFIPAGCPHQVRNL 553 (624)
|.|+ .=++.=..||.||||+|.||.+|+.
T Consensus 165 ~~v~~g~~~~l~pGd~v~ipsgv~Ha~rt~ 194 (217)
T 4b29_A 165 FHLRNAPDLMLEPGQTRFHPANAPHAMTTL 194 (217)
T ss_dssp EEETTSCCEEECTTCEEEECTTCCEEEECC
T ss_pred EEECCCCEEecCCCCEEEcCCCCceeEEEC
Confidence 5444 4456678999999999999999974
No 92
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=60.47 E-value=3.4 Score=39.54 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.6
Q ss_pred EEEeecCCeEEecCCCccccccchh
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
++.=..||.|+||||.||...+-..
T Consensus 123 ~~~l~~GDli~IP~g~~H~~~~~~~ 147 (179)
T 1zrr_A 123 QVLCEKNDLISVPAHTPHWFDMGSE 147 (179)
T ss_dssp EEECCCSCEEEECTTCCBCCCCSSC
T ss_pred EEEECCCCEEEECCCCeEeeecCCC
Confidence 5667899999999999999887655
No 93
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=60.37 E-value=2.1 Score=40.73 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=25.5
Q ss_pred EEEeecCCeEEecCCCccccccchhhHhhhhcccCc
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSP 566 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 566 (624)
++.=+.||++ ||+|.||+.+|.-.---..+-.++|
T Consensus 119 ~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~P 153 (172)
T 3es1_A 119 KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILIE 153 (172)
T ss_dssp EEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEEE
T ss_pred EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEcC
Confidence 5667899999 9999999999986543333333444
No 94
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=58.38 E-value=4.2 Score=41.48 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.5
Q ss_pred eEEEeecCCeEEecCCCccccccch
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
-++.=..||+++||+|.+|..+|.-
T Consensus 96 ~~~~l~~GD~~~ip~g~~H~~~n~~ 120 (361)
T 2vqa_A 96 EIADVDKGGLWYFPRGWGHSIEGIG 120 (361)
T ss_dssp EEEEEETTEEEEECTTCEEEEEECS
T ss_pred EEEEEcCCCEEEECCCCeEEEEeCC
Confidence 5677888999999999999999985
No 95
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=57.09 E-value=5.5 Score=34.93 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCcceEEEeecCCeEEecCCCccccccch
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
-|..=++.=..||++|||+|.+|+.++-.
T Consensus 52 ~i~~~~~~l~~Gd~~~i~p~~~H~~~~~~ 80 (164)
T 2arc_A 52 KNQGREFVCRPGDILLFPPGEIHHYGRHP 80 (164)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEECT
T ss_pred EECCEEEEecCCeEEEEcCCCCEEEEeCC
Confidence 34455677789999999999999988754
No 96
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=56.60 E-value=3.9 Score=41.55 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=21.0
Q ss_pred EEEeecCCeEEecCCCccccccch
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
++.=..||++++|||++||++|-.
T Consensus 110 ~~~L~~Gds~y~p~~~~H~~~N~~ 133 (266)
T 4e2q_A 110 SKKLTVDSYAYLPPNFHHSLDCVE 133 (266)
T ss_dssp CEEECTTEEEEECTTCCCEEEESS
T ss_pred EEEEcCCCEEEECCCCCEEEEeCC
Confidence 466788999999999999999953
No 97
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=56.44 E-value=4.7 Score=40.49 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=24.8
Q ss_pred hCCcceEEEeecCCeEEecCCCccccccch
Q 006941 525 YGIEPWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 525 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
|-+..=++.=..||.+|+|+||||+.+|.-
T Consensus 225 ~~~~~~~~~v~~GD~~~~~~~~~h~~~n~g 254 (278)
T 1sq4_A 225 YRLNQDWVEVEAGDFMWLRAFCPQACYSGG 254 (278)
T ss_dssp EEETTEEEEEETTCEEEEEESCCEEEECCS
T ss_pred EEECCEEEEeCCCCEEEECCCCCEEEEcCC
Confidence 445555677789999999999999999964
No 98
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=56.03 E-value=4 Score=39.65 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=27.2
Q ss_pred EEEeecCCeEEecCCCccccccchhhHhhhhcccCcc
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 567 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 567 (624)
++.=..||.|+||||.||...+-.+--=+|+.|-+++
T Consensus 128 ~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~ 164 (191)
T 1vr3_A 128 RISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGE 164 (191)
T ss_dssp EEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSS
T ss_pred EEEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCC
Confidence 6788999999999999999887554322355555554
No 99
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=55.89 E-value=5.2 Score=42.82 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=24.7
Q ss_pred CCcceEEEeecCCeEEecCCCcccccc
Q 006941 526 GIEPWTFIQKLGEAVFVPAGCPHQVRN 552 (624)
Q Consensus 526 GVEpWtf~Q~lGEAVFIPAGCPHQVRN 552 (624)
-|.+=++.-..||+|+||+|+.|+++|
T Consensus 158 ~v~G~~~~~~~GD~i~~P~g~~H~~~N 184 (394)
T 3bu7_A 158 IVDGHKVELGANDFVLTPNGTWHEHGI 184 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEE
T ss_pred EECCEEEEEcCCCEEEECcCCCEEEEc
Confidence 456669999999999999999999999
No 100
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=54.20 E-value=3 Score=45.80 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=26.2
Q ss_pred EEeecCCeEEecCCCccccccchhhHhhhhcccCcc
Q 006941 532 FIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 567 (624)
Q Consensus 532 f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 567 (624)
+.=+.||+|+||||.||-..|.-+.-=+++-++.+-
T Consensus 115 ~~l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~~ 150 (493)
T 2d5f_A 115 RHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTS 150 (493)
T ss_dssp EEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTT
T ss_pred EEecCCCEEEECCCCcEEEEeCCCCCEEEEEEecCc
Confidence 344789999999999999999876444444444433
No 101
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=50.87 E-value=3.2 Score=45.23 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=26.3
Q ss_pred EeecCCeEEecCCCccccccchhhHhhhhcccCccc
Q 006941 533 IQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPEN 568 (624)
Q Consensus 533 ~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 568 (624)
.=+.||+++||||.||-..|.-+.-=+++-++++.|
T Consensus 130 ~l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n 165 (459)
T 2e9q_A 130 PFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRN 165 (459)
T ss_dssp EEETTEEEEECTTCCEEEEECSSSCEEEEEEEESSS
T ss_pred EecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCC
Confidence 446799999999999999999764445554444433
No 102
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=47.63 E-value=4.2 Score=44.99 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=27.0
Q ss_pred EeecCCeEEecCCCccccccchhhHhhhhcccCccc
Q 006941 533 IQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPEN 568 (624)
Q Consensus 533 ~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 568 (624)
.=+.||+|.||||.||-..|.-+.-=||+-++.+-|
T Consensus 129 ~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n 164 (510)
T 3c3v_A 129 RFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNN 164 (510)
T ss_dssp EECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTB
T ss_pred EecCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCC
Confidence 345799999999999999999765445554555554
No 103
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=45.27 E-value=6.2 Score=37.89 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=32.3
Q ss_pred cceE-EEeecCCeEEecCCCccccccchhhHhhhhcccCccchHH
Q 006941 528 EPWT-FIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQ 571 (624)
Q Consensus 528 EpWt-f~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 571 (624)
.+|+ ++..+||.|.||.|.+|...|.... |.++=||+-|-.+
T Consensus 116 ~a~~~i~L~pGesvtIppg~~H~f~ageeg--vli~EvSt~~dDe 158 (175)
T 2y0o_A 116 TVWHEIELEPGGQYTIPPNTKHWFQAGEEG--AVVTEMSSTSTDK 158 (175)
T ss_dssp CCCEEEEECTTCEEEECTTCCEEEEEEEEE--EEEEEEEECCCGG
T ss_pred cCCcEEEECCCCEEEECCCCcEEEEeCCCC--EEEEEEeCCCCCC
Confidence 3444 5899999999999999999996555 5567677666554
No 104
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=44.85 E-value=4.8 Score=44.00 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=23.4
Q ss_pred EEEeecCCeEEecCCCccccccchhhHhhh
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKSCIKAA 560 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVA 560 (624)
++.=+.||+|+||||.+|-..|.-+--=++
T Consensus 114 ~~~l~~GDvi~iPaG~~h~~~N~G~~~l~~ 143 (476)
T 1fxz_A 114 IYNFREGDLIAVPTGVAWWMYNNEDTPVVA 143 (476)
T ss_dssp EEEECTTEEEEECTTCEEEEEECSSSCEEE
T ss_pred EEEEeCCCEEEECCCCcEEEEeCCCCCEEE
Confidence 445568999999999999999997533334
No 105
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=44.48 E-value=9.7 Score=39.28 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.5
Q ss_pred EEEeecCCeEEecCCCccccccchh
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkS 555 (624)
++.=..||.++||+|.+|.++|...
T Consensus 123 ~~~l~~GD~~~ip~g~~H~~~n~~~ 147 (385)
T 1j58_A 123 IDDVGEGDLWYFPSGLPHSIQALEE 147 (385)
T ss_dssp EEEEETTEEEEECTTCCEEEEEEEE
T ss_pred EEEeCCCCEEEECCCCeEEEEECCC
Confidence 5678899999999999999999864
No 106
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=41.32 E-value=6.4 Score=37.09 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=27.9
Q ss_pred ecCCeEEecCCCccccccch----hhHhhh-----hcccCcc
Q 006941 535 KLGEAVFVPAGCPHQVRNLK----SCIKAA-----LDFVSPE 567 (624)
Q Consensus 535 ~lGEAVFIPAGCPHQVRNLk----SCIKVA-----lDFVSPE 567 (624)
..||.+++|+|.+|++.+.. -||-++ +-|+.|.
T Consensus 85 ~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~GpL~~~~~~ 126 (165)
T 3cjx_A 85 TAGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLSGCNVNFTQD 126 (165)
T ss_dssp ETTEEEEECTTCEECEECCTTCSSCEEEEEEEESCEEEECTT
T ss_pred CCCeEEEeCCCCceeeEeCCCCCCCcEEEEEEeccceecCCC
Confidence 68999999999999999988 787776 5666664
No 107
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=41.10 E-value=12 Score=40.13 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.3
Q ss_pred cceEEEeecCCeEEecCCCccccccc
Q 006941 528 EPWTFIQKLGEAVFVPAGCPHQVRNL 553 (624)
Q Consensus 528 EpWtf~Q~lGEAVFIPAGCPHQVRNL 553 (624)
...++.=..||+++||+|.+|-+.|.
T Consensus 89 ~~~~~~l~~GDv~~iP~G~~H~~~N~ 114 (416)
T 1uij_A 89 DRDSYNLHPGDAQRIPAGTTYYLVNP 114 (416)
T ss_dssp CEEEEEECTTEEEEECTTCEEEEEEC
T ss_pred CCeEEEecCCCEEEECCCCeEEEEec
Confidence 35577888999999999999999998
No 108
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=39.84 E-value=12 Score=40.39 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.9
Q ss_pred eEEEeecCCeEEecCCCccccccch
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
.++.=+.||.++||+|.+|.+.|.-
T Consensus 128 ~~~~l~~GDv~~~P~G~~H~~~N~g 152 (445)
T 2cav_A 128 DTYKLDQGDAIKIQAGTPFYLINPD 152 (445)
T ss_dssp EEEEEETTEEEEECTTCCEEEEECC
T ss_pred EEEEecCCCEEEECCCCcEEEEECC
Confidence 4788889999999999999999985
No 109
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=39.62 E-value=7.9 Score=42.32 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=26.0
Q ss_pred eEEEeecCCeEEecCCCccccccchhhHhhhhcccCc
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSP 566 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 566 (624)
.+..=..||.++||+|.||.+.|...-+.+..=|+|+
T Consensus 383 ~~~~l~~GDv~viP~G~~H~~~ng~~~l~~l~f~~s~ 419 (476)
T 1fxz_A 383 FDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTND 419 (476)
T ss_dssp EEEEEETTCEEEECTTCEEEEEECSTTEEEEEEESSS
T ss_pred eeeEEcCCCEEEECCCCeEEEEeCCCCEEEEEEECCC
Confidence 3434688999999999999999954444433333355
No 110
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=37.44 E-value=15 Score=39.66 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.4
Q ss_pred ceEEEeecCCeEEecCCCccccccch
Q 006941 529 PWTFIQKLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 529 pWtf~Q~lGEAVFIPAGCPHQVRNLk 554 (624)
..++.=+.||+++||+|.+|.+.|.-
T Consensus 102 ~~~~~l~~GDv~~iP~G~~H~~~N~g 127 (434)
T 2ea7_A 102 RDSYILEQGHAQKIPAGTTFFLVNPD 127 (434)
T ss_dssp EEEEEEETTEEEEECTTCEEEEEECC
T ss_pred CEEEEeCCCCEEEECCCccEEEEeCC
Confidence 45788889999999999999999985
No 111
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=32.03 E-value=12 Score=33.88 Aligned_cols=24 Identities=8% Similarity=-0.133 Sum_probs=21.5
Q ss_pred ecCCeEEecCCCccc-cccchhhHh
Q 006941 535 KLGEAVFVPAGCPHQ-VRNLKSCIK 558 (624)
Q Consensus 535 ~lGEAVFIPAGCPHQ-VRNLkSCIK 558 (624)
..||.+++|+|.+|+ +.+...|+=
T Consensus 89 ~~Gd~~~~p~g~~H~p~~~~e~~~~ 113 (145)
T 2o1q_A 89 IAPGYGYESANARHDKTEFPVASEF 113 (145)
T ss_dssp ESSEEEEECTTCEESCCEEEEEEEE
T ss_pred CCCEEEEECcCCccCCeECCCCeEE
Confidence 789999999999999 888888853
No 112
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=31.60 E-value=18 Score=38.39 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=54.4
Q ss_pred chhhhhccccCCccCCCCCcceeecCCCCChhh-------HHHhcchhhHHhhhCCCCcCccCCCCCcccccccCCCCCC
Q 006941 240 NIHQFFKGYTDGRFDKESWPQILKLKDWPPSNL-------FEERLPRHNVEFLGCLPFKEYTHPCAGALNIATKLPKKSL 312 (624)
Q Consensus 240 ~i~qFf~Gy~~gR~~~~gwp~mLKLKDWPps~~-------F~e~LP~h~~eFi~aLP~~EYT~pr~G~LNLAakLP~~~l 312 (624)
.+.+|++.+..-. -.-.|+.|=+|.-|=|... +++..|.. .+ +..|.=.++.- +...|.--=|..--
T Consensus 22 ~~~~~~~~l~~~~-l~plW~~~~~~~p~~P~~~~~p~~w~~~~~~~~l-~~-~~~~~~~~~~g---~Rr~~~l~nP~~~~ 95 (368)
T 3nw4_A 22 ELRALYKSFEEES-IIPLWTQLGDLMPIHPKSKAVPHVWKWSTLLRLA-RK-SGELVPVGRGG---ERRALGLANPGLGG 95 (368)
T ss_dssp HHHHHHHHHHHTT-CCCGGGTHHHHSCSSCCCSSCCEEECHHHHHHHH-HH-HHHHCCCCTTT---CCCEEECCCTTSTT
T ss_pred hHHHHHHHHHhcC-CcccchhccccCCCCCCCCCcceEeeHHHHHHHH-HH-hhccCCcccCc---ceEEEEEeCCCCCC
Confidence 4667776665422 2235777666666644443 33333222 11 22222233320 23334333444444
Q ss_pred CCCCCCceeeccccccccCCCCCcccccccccchhhhhhc
Q 006941 313 KPDMGPKTYIAYGVAQELGRADSVTKLHCDMSDAVNVLTH 352 (624)
Q Consensus 313 kPDLGPK~YIAYG~~eElGrGDSvTkLH~DmSDAVNIL~h 352 (624)
.+-.+|.+|..+..-.- | .+|..|--.+.+|++.+-
T Consensus 96 ~~~~t~~L~a~~~~l~P---G-~~~~~HrH~~~ev~~Vle 131 (368)
T 3nw4_A 96 NAYISPTMWAAIQYLGP---R-ETAPEHRHSQNAFRFVVE 131 (368)
T ss_dssp CSCSSSSCEEEEEEECT---T-CEEEEEEESSCEEEECSS
T ss_pred cCccCCceEEEEEEECC---C-CccCceecccceEEEEEe
Confidence 56778999998876543 3 368888777778765543
No 113
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=26.92 E-value=12 Score=41.22 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=32.6
Q ss_pred EEEeecCCeEEecCCCccccccchhhHhhhhcccCccchHHHHHHHHHhhcCCC
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPENVSQCVRLTEEFRLLPP 584 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~ 584 (624)
+..=..||.++||+|.+|...|...-..+..=|.|+..-..-+ +.=|+.+|.
T Consensus 413 ~~~l~~GDv~vvP~G~~H~~~n~~e~~~~l~~~ts~~p~~~~l--~s~~~~~p~ 464 (493)
T 2d5f_A 413 DGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYI--KDVFRAIPS 464 (493)
T ss_dssp EEEEETTCEEEECTTCEEEEEEEEEEEEEEEEESSTTCCEEEH--HHHHHHSCH
T ss_pred eEEEcCCCEEEECCCCeEeeeeCCCCEEEEEEECCCCCcceeH--HHHHHhCCH
Confidence 3447889999999999999999754443333222322211112 666777874
No 114
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=25.00 E-value=24 Score=38.62 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=18.0
Q ss_pred ecCCeEEecCCCccccccch
Q 006941 535 KLGEAVFVPAGCPHQVRNLK 554 (624)
Q Consensus 535 ~lGEAVFIPAGCPHQVRNLk 554 (624)
+.||+|.||||.||=.-|.-
T Consensus 150 ~~GDvi~iPaG~~~~~~N~g 169 (466)
T 3kgl_A 150 RTGDTIATHPGVAQWFYNDG 169 (466)
T ss_dssp ETTEEEEECTTCEEEEECCS
T ss_pred cCCCEEEECCCCcEEEEeCC
Confidence 56999999999999999875
No 115
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=24.17 E-value=27 Score=38.57 Aligned_cols=37 Identities=8% Similarity=0.017 Sum_probs=25.8
Q ss_pred eEEEeecCCeEEecCCCccccccchhhHhhhhcccCc
Q 006941 530 WTFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSP 566 (624)
Q Consensus 530 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 566 (624)
.+..=..||.++||+|.||-+.|...-+.+..=|+|+
T Consensus 417 ~~~~l~~GDv~viP~G~~H~~~Ng~e~l~~l~f~~s~ 453 (510)
T 3c3v_A 417 YDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDS 453 (510)
T ss_dssp EEEEEETTCEEEECTTCEEEEEECSSEEEEEEEESSS
T ss_pred EeEEEcCCcEEEECCCCeEEEEeCCCCEEEEEEECCC
Confidence 4444788999999999999999954444443333344
No 116
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}
Probab=24.04 E-value=40 Score=31.83 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=26.2
Q ss_pred EEEeecCCeEEecCCCccccccchhhHhhhhcccCcc
Q 006941 531 TFIQKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPE 567 (624)
Q Consensus 531 tf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 567 (624)
+..-..||+++.|.|-+|+|+|.-.=.-|.+.--+|-
T Consensus 118 ~~~l~~G~~~~~~~~~iH~V~N~~~~~aVSlHvY~pp 154 (171)
T 3eqe_A 118 SYFVHEGECLISTKGLIHKMSNPTSERMVSLHVYSPP 154 (171)
T ss_dssp EEEEETTCEEEECTTCEEEEECCSSSCEEEEEEEESC
T ss_pred eEEeCCCcEEEeCCCCEEEEECCCCCCEEEEEEeCCC
Confidence 3445689999999999999999765334444444443
No 117
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=21.90 E-value=22 Score=38.88 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=25.0
Q ss_pred eecCCeEEecCCCccccccchhhHhhhhcccCccc
Q 006941 534 QKLGEAVFVPAGCPHQVRNLKSCIKAALDFVSPEN 568 (624)
Q Consensus 534 Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 568 (624)
=+.||+|.||||.+|=.-|--+-==|++-++.+-|
T Consensus 134 ~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n 168 (465)
T 3qac_A 134 LREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN 168 (465)
T ss_dssp EETTEEEEECTTCEEEEECCSSSCEEEEEEECTTS
T ss_pred ecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCC
Confidence 36799999999999999997654334444444443
No 118
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=21.60 E-value=28 Score=38.40 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.4
Q ss_pred ecCCeEEecCCCccccccchh
Q 006941 535 KLGEAVFVPAGCPHQVRNLKS 555 (624)
Q Consensus 535 ~lGEAVFIPAGCPHQVRNLkS 555 (624)
+.||++.||||.||-.-|--+
T Consensus 115 ~~GDV~viPaG~~h~~~N~G~ 135 (496)
T 3ksc_A 115 REGDIIAVPTGIVFWMYNDQD 135 (496)
T ss_dssp CTTEEEEECTTCEEEEEECSS
T ss_pred CCCCEEEECCCCcEEEEcCCC
Confidence 579999999999999888654
No 119
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=20.04 E-value=36 Score=37.94 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.5
Q ss_pred ecCCeEEecCCCccccccchhh
Q 006941 535 KLGEAVFVPAGCPHQVRNLKSC 556 (624)
Q Consensus 535 ~lGEAVFIPAGCPHQVRNLkSC 556 (624)
+.||+|.||||.+|=..|--.-
T Consensus 177 r~GDviaiPaG~~~w~yN~G~~ 198 (531)
T 3fz3_A 177 REGDVVAIPAGVAYWSYNDGDQ 198 (531)
T ss_dssp ETTEEEEECTTCCEEEECCSSS
T ss_pred cCCcEEEECCCCeEEEEeCCCc
Confidence 6799999999999999997554
Done!