BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006942
(624 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
DN+G T L+A G+L +++L+K+ D+ N + EGF P+H AA GH + LL+
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLLK- 134
Query: 129 THGVDI 134
+G D+
Sbjct: 135 -YGADV 139
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 72 GHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHG 131
GHT L+A G+L +++L+KY D+ N G P+H AA GH + LL+ HG
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHLEIVEVLLK--HG 103
Query: 132 VDIYSGKDGANVLSFLIAANLYDVALDLLK 161
D+ + KD +AA YD L++++
Sbjct: 104 ADV-NAKDYEGFTPLHLAA--YDGHLEIVE 130
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D+ G T L+A KG+L +++L+K+ D+ N G P+H AALYGH + LL+
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 128 VTHGVDI 134
+G D+
Sbjct: 102 --NGADV 106
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D G T L+A G+L +++L+K D+ N GF P+H AA GH + LL+
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVLLK- 134
Query: 129 THGVDI 134
+G D+
Sbjct: 135 -YGADV 139
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D +G T L+A+ G+L +++L+KY D+ N + G P++ AA +GH + LL+
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLK- 122
Query: 129 THGVDI 134
HG D+
Sbjct: 123 -HGADV 127
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D++G T ++AA G+L +++L++ D+ N G P+H AA GH + LL+
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLK- 89
Query: 129 THGVDIYSGKDGANVLSFLIAA 150
+G D+ + KD + +AA
Sbjct: 90 -YGADV-NAKDATGITPLYLAA 109
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 38 VELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPD 97
+ L+++ E I +L K A+ V+ D G T L+A +G+L +++L+KY D
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNA-----SDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 98 LTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDI 134
+ + + +G+ P+H AA GH + LL+ +G D+
Sbjct: 106 VNAMDY-QGYTPLHLAAEDGHLEIVEVLLK--YGADV 139
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D G T L+A G+L +++L+KY D+ N + G P+H AA GH + LL+
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 128 VTHGVDI 134
HG D+
Sbjct: 135 --HGADV 139
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
D+ G T L+A G+ +++L+K+ D+ N R +G+ P+H AA GH + LL+
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLK 101
Query: 128 VTHGVDIYSGKDGANVLSFLIAAN 151
+G D+ + +D + +AA+
Sbjct: 102 --YGADV-NAQDAYGLTPLHLAAD 122
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D G+T L+A +G+L +++L+K D+ N + +G+ P+H AA GH + LL+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 128 VTHGVDIYS-GKDG 140
G D+ + KDG
Sbjct: 90 A--GADVNAKDKDG 101
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D G+T L+A +G+L +++L+K D+ N + +G+ P+H AA GH + LL+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 128 VTHGVDIYS-GKDG 140
G D+ + KDG
Sbjct: 90 A--GADVNAKDKDG 101
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D G+T L+A +G+L +++L+K D+ N + +G+ P+H AA GH + LL+
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 128 VTHGVDIYS-GKDG 140
G D+ + KDG
Sbjct: 102 A--GADVNAKDKDG 113
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D G+T L+A +L +++L+K+ D+ N +G P+H AAL+GH + LL+
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGSTPLHLAALFGHLEIVEVLLK- 101
Query: 129 THGVDI 134
HG D+
Sbjct: 102 -HGADV 106
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 67 RQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLL 126
R G TA ++AAKG LKLL++ D+ NI+ +G+ P+H AA +G ++ L+
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILV 252
Query: 127 E 127
E
Sbjct: 253 E 253
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D G T L+A G+L +++L+KY D+ N G P+H AA+ GH + LL+
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIVEVLLK- 101
Query: 129 THGVDI 134
HG D+
Sbjct: 102 -HGADV 106
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D +G T L+ A G+L +++L+K D+ N GF P+H AA GH + LL+
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
Query: 128 VTHGVDI 134
HG D+
Sbjct: 102 --HGADV 106
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D++G T L+AA G L +++L+K D+ N G P+H AA GH + LL+
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLLK- 93
Query: 129 THGVDI 134
HG D+
Sbjct: 94 -HGADV 98
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D +G T L+A G+L +KLL++ D+ N + G P+H AA GH + LLE
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 128 VTHGVDI 134
G D+
Sbjct: 90 A--GADV 94
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D +G T L+A G+L +KLL++ D+ N + G P+H AA GH + LLE
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 35.4 bits (80), Expect = 0.091, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 71 HGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTH 130
+G T L+A G+L +KLL++ D+ N + G P+H AA GH + LLE
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 131 GVDI 134
G D+
Sbjct: 58 GADV 61
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D+ G T L+A +G+L +++L+K+ D+ N R G P+H AA GH + LLE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLLE- 101
Query: 129 THGVDI 134
+G D+
Sbjct: 102 -YGADV 106
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
DN G T L+A G+L +++L+K+ D+ + GF P+H AA+ GH + LL+
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLK- 101
Query: 129 THGVDI 134
+G D+
Sbjct: 102 -YGADV 106
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D +G T L+A G+L +++L+KY D+ N G P+H AA GH + LL+
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADV-NAFDMTGSTPLHLAADEGHLEIVEVLLK- 134
Query: 129 THGVDI 134
+G D+
Sbjct: 135 -YGADV 139
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D +G T L+A G+L +KLL++ D+ N + G P+H AA GH + LLE
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 71 HGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTH 130
+G T L+A G+L +KLL++ D+ N + G P+H AA GH + LLE
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57
Query: 131 GVDI 134
G D+
Sbjct: 58 GADV 61
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 56 LASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAAL 115
L+ DP +D+ G T L+A G+ +KLL+ D N + +G P+H AA
Sbjct: 57 LSQGADPNA---KDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAE 112
Query: 116 YGHKDTFHYLLEVTHGVD 133
GHK+ LL + G D
Sbjct: 113 NGHKEVVKLLL--SQGAD 128
Score = 35.4 bits (80), Expect = 0.090, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D+ G T L+A G+ +KLL+ D N + +G P+H AA GHK+ LL
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLL-- 90
Query: 129 THGVD 133
+ G D
Sbjct: 91 SQGAD 95
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D+ G T L+A G+L +++L+K D+ N EG P+H AA++GH + LL+
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLK- 134
Query: 129 THGVDI 134
+G D+
Sbjct: 135 -NGADV 139
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 36.6 bits (83), Expect = 0.040, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D+ G T L+A +G+L +++L+K+ D+ N G P+H AA GH + LLE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLE- 101
Query: 129 THGVDI 134
+G D+
Sbjct: 102 -YGADV 106
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D+ G T +A +G+ +KLL+ D+ N + +G P+H AA GHK+ L
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLL-- 122
Query: 128 VTHGVDI-YSGKDGANVLSF 146
++ G D+ S DG L
Sbjct: 123 ISKGADVNTSDSDGRTPLDL 142
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 24/116 (20%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D+ G T +A +G+ +KLL+ D+ N + +G P+H AA GHK+ L +
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLL--I 90
Query: 129 THGVDI------------YSGKDGANVLSFLIAANLYDV---------ALDLLKRH 163
+ G D+ Y+ K+G + L+ + DV LDL + H
Sbjct: 91 SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREH 146
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D+ G T +A G+ +KLL+ D+ N + +G P+H AA GHK+ L
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLL-- 122
Query: 128 VTHGVDI-YSGKDGANVLSF 146
++ G D+ S DG L
Sbjct: 123 ISKGADVNTSDSDGRTPLDL 142
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D+ G T +A G+ +KLL+ D+ N + +G P+H AA GHK+ L +
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLL--I 90
Query: 129 THGVDI 134
+ G D+
Sbjct: 91 SKGADV 96
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 79 SAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDI 134
+A GN +K L++ D+ N +G P+H AA GHK+ L ++ G D+
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLL--ISKGADV 63
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYL 125
QD G + +A G L LK+LV++ D+ N+ G G LP+H A GH +L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFL 120
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 60 VDPETLARQDNHGHTAATLSAAKGNLRALKLLVK-YNPDLTNIRHGEGFLPVHDAALYGH 118
V P+ L R G TA + AL+LL + +P N++ G PVHDAA G
Sbjct: 27 VHPDALNR---FGKTALQVMMFGSTAIALELLKQGASP---NVQDTSGTSPVHDAARTGF 80
Query: 119 KDTFHYLLEVTHGVDIYSGKDGANVLSFLIA 149
DT L+E HG D+ + DG L +A
Sbjct: 81 LDTLKVLVE--HGADV-NVPDGTGALPIHLA 108
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYL 125
QD G + +A G L LK+LV++ D+ N+ G G LP+H A GH +L
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFL 126
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 60 VDPETLARQDNHGHTAATLSAAKGNLRALKLLVK-YNPDLTNIRHGEGFLPVHDAALYGH 118
V P+ L R G TA + AL+LL + +P N++ G PVHDAA G
Sbjct: 33 VHPDALNR---FGKTALQVMMFGSTAIALELLKQGASP---NVQDTSGTSPVHDAARTGF 86
Query: 119 KDTFHYLLEVTHGVDIYSGKDGANVLSFLIA 149
DT L+E HG D+ + DG L +A
Sbjct: 87 LDTLKVLVE--HGADV-NVPDGTGALPIHLA 114
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D++ TA +AAKGNL+ + +L+ Y TNI+ EG P+H A + +L
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFL-- 191
Query: 128 VTHGVDIY 135
VT G IY
Sbjct: 192 VTQGASIY 199
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D++ TA +AAKGNL+ + +L+ Y TNI+ EG P+H A + +L
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFL-- 191
Query: 128 VTHGVDIY 135
VT G IY
Sbjct: 192 VTQGASIY 199
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D+ G T L+A +G+L +++L+K+ D+ N G P+H AA GH + LLE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLE- 101
Query: 129 THGVDI 134
+G D+
Sbjct: 102 -YGADV 106
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 54 DKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDA 113
D L + DP D+ G T +A G+ +KLL+ D N + +G P+H A
Sbjct: 22 DLLENGADPNA---SDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYA 77
Query: 114 ALYGHKDTFHYLL 126
A GHK+ LL
Sbjct: 78 AENGHKEIVKLLL 90
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 56 LASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAAL 115
L+ DP +D+ G T +A G+ +KLL+ D N + +G P+H AA
Sbjct: 57 LSKGADPNA---KDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAE 112
Query: 116 YGHKDTFHYLL 126
GHK+ LL
Sbjct: 113 NGHKEIVKLLL 123
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
DN G+T L+A+ G+L +++L+K D+ N G P+H AA GH + LL+
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGHLEIVEVLLK- 101
Query: 129 THGVDI 134
HG D+
Sbjct: 102 -HGADV 106
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
D+ G T L+A +G+L +++L+K D+ H GF P+H AA GH + LL+
Sbjct: 76 DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDH-NGFTPLHLAANIGHLEIVEVLLK 134
Query: 128 VTHGVDIYS 136
HG D+ +
Sbjct: 135 --HGADVNA 141
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D G +A G L L+ L+++ D+ NI EG LP+H AA GH +L++
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 128 VT 129
T
Sbjct: 125 HT 126
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 90 LLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDI 134
LL NPDL + GF +HDAA G DT LLE V+I
Sbjct: 57 LLRGANPDL---KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNI 98
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKD 120
+DN G+ L+A +G+LR ++ LVK+ R+ +G A LYG +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D G T L+A +G+L +++L+KY D+ N G P+H AA GH + LL+
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEVLLK- 134
Query: 129 THGVDI 134
+G D+
Sbjct: 135 -YGADV 139
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D G+ +A G L L+ L+++ D+ NI EG LP+H AA GH +L++
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 128 VT 129
T
Sbjct: 125 HT 126
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKD 120
+DN G+ L+A +G+LR ++ LVK+ R+ +G A LYG +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 90 LLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDI 134
LL NPDL + R G +HDAA G DT LLE V+I
Sbjct: 57 LLRGANPDLKD-RTGNAV--IHDAARAGFLDTLQTLLEFQADVNI 98
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D G T L+A +L +++L+K D+ I G P+H A+YGH + LL+
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI-DAIGETPLHLVAMYGHLEIVEVLLK 101
Query: 128 VTHGVDI 134
HG D+
Sbjct: 102 --HGADV 106
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 72 GHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
G+T +++ GN++ +K L+++ D+ N + G+ P+H AA GH D LL+
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 72 GHTAATLSAAKGNLRA-LKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTH 130
GHT ++A +G++ L LL K + +GF P+H AA YG LLE
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTK--KGFTPLHVAAKYGKVRVAELLLERDA 170
Query: 131 GVDIYSGKDGANVLSFLIAANLYDVALDLLKR 162
+ +GK+G L + N D+ LL R
Sbjct: 171 HPNA-AGKNGLTPLHVAVHHNNLDIVKLLLPR 201
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D GHT L+A G+L +++L+K D+ N G P+H AA H + LL+
Sbjct: 44 DYWGHTPLHLAAMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVEVLLK- 101
Query: 129 THGVDI 134
HG D+
Sbjct: 102 -HGADV 106
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D G +A G L L+ L+++ D+ NI EG LP+H AA GH +L++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 128 VT 129
T
Sbjct: 125 HT 126
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 90 LLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDI 134
LL NPDL + GF +HDAA G DT LLE V+I
Sbjct: 57 LLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKD 120
+DN G+ L+A +G+LR ++ LVK+ R+ +G A LYG +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D G +A G L L+ L+++ D+ NI EG LP+H AA GH +L++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 128 VT 129
T
Sbjct: 125 HT 126
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 90 LLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDI 134
LL NPDL + GF +HDAA G DT LLE V+I
Sbjct: 57 LLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKD 120
+DN G+ L+A +G+LR ++ LVK+ R+ +G A LYG +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D G T L+A G+L +++L+K D+ N + G P+H AA GH + LL+
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADV-NAKDDNGITPLHLAANRGHLEIVEVLLK- 134
Query: 129 THGVDIYSGKDGANVLSFLIAAN 151
+G D+ + +D +F I+ N
Sbjct: 135 -YGADV-NAQDKFGKTAFDISIN 155
>pdb|2CPR|A Chain A, Solution Structure Of The Hrdc Domain Of Human Exosome
Component 10
Length = 124
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 341 SNQDGHTIF---DHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVPSSEV 397
S G IF + LYR++K Q + LF+ RDK G ++P+ +
Sbjct: 3 SGSSGKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMM 62
Query: 398 AGAALQMQRELQWFKAIENLVHPFFREATNDLK---QTPREV 436
A ++ +E Q A N V P R+ N++ Q RE+
Sbjct: 63 LKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREM 104
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D++ TA +AAKGNL+ + +L+ Y TNI+ EG P+H A + L
Sbjct: 135 KDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLL-- 191
Query: 128 VTHGVDIY 135
V+ G IY
Sbjct: 192 VSQGASIY 199
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D+ G T L+A +G+L +++L+K D+ N GF P+H AA GH + LL+
Sbjct: 76 KDSLGVTPLHLAARRGHLEIVEVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 128 VTHGVDIYS 136
+G D+ +
Sbjct: 135 --NGADVNA 141
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D++ TA +AAKGNL+ + +L+ Y TNI+ EG P+H A + L
Sbjct: 136 KDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLL-- 192
Query: 128 VTHGVDIY 135
V+ G IY
Sbjct: 193 VSQGASIY 200
>pdb|1BK4|A Chain A, Crystal Structure Of Rabbit Liver
Fructose-1,6-Bisphosphatase At 2.3 Angstrom Resolution
Length = 337
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 221 HDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIH 280
D D + +I K S+ +G+ G+M+ +HR L + L P K
Sbjct: 217 KDFDPAVTEYIQKKKFPPDNSSPYGARY-----VGSMVADVHRTLVYGGIFLYPANKKSP 271
Query: 281 DQKLTHMRTVEIVRIICE---GVVWTNFQ---NSAQLSVAMLAAAILGIPEVVNEFIMAY 334
D KL + + I E G+ T + + + A ILG P+ V EF+ Y
Sbjct: 272 DGKLRLLYECNPMAFIMEKAGGMATTGKEAILDIVPTDIHQRAPVILGSPDDVQEFLEIY 331
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D G T L+A G+L +++L+K+ D+ I G P+H AAL GH + LL+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI-XGSTPLHLAALIGHLEIVEVLLK- 101
Query: 129 THGVDIYS 136
HG D+ +
Sbjct: 102 -HGADVNA 108
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 72 GHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHG 131
G T L+A G+L +++L+K+ D+ N G P+H AA+ GH + LL+ HG
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK--HG 136
Query: 132 VDIYS 136
D+ +
Sbjct: 137 ADVNA 141
>pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAF|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAG|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
pdb|3SAG|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
Length = 428
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 354 LYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVPSSEVAGAALQMQRELQWFKA 413
LYR++K Q + LF+ RDK G ++P+ + A ++ +E Q A
Sbjct: 316 LYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIA 375
Query: 414 IENLVHPFFREATNDL 429
N V P R+ N++
Sbjct: 376 CCNPVPPLVRQQINEM 391
>pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
pdb|3SAH|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
Length = 428
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 354 LYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVPSSEVAGAALQMQRELQWFKA 413
LYR++K Q + LF+ RDK G ++P+ + A ++ +E Q A
Sbjct: 316 LYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIA 375
Query: 414 IENLVHPFFREATNDL 429
N V P R+ N++
Sbjct: 376 CCNPVPPLVRQQINEM 391
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 24/126 (19%)
Query: 26 VEPGSMTIFHMIVE---------------LLIDAESD--EAICLLDKLASKVDPETLARQ 68
E G + I HM+V+ L+ AE++ EA+ L K + VDP +
Sbjct: 19 AEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP-----K 73
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D G T L+A KG+ ++ L+ N + G+ P+ A Y H D LL
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL-- 131
Query: 129 THGVDI 134
+ G DI
Sbjct: 132 SKGSDI 137
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D G T L+A G+L +++L+K+ D+ I G P+H AAL GH + LL+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI-MGSTPLHLAALIGHLEIVEVLLK- 101
Query: 129 THGVDIYS 136
HG D+ +
Sbjct: 102 -HGADVNA 108
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 72 GHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHG 131
G T L+A G+L +++L+K+ D+ N G P+H AA+ GH + LL+ HG
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK--HG 136
Query: 132 VDIYS 136
D+ +
Sbjct: 137 ADVNA 141
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
DN G T L+A G+L +++L+K+ D+ + G+ P+H AA +GH + LL+
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLLK- 101
Query: 129 THGVDI 134
+G D+
Sbjct: 102 -NGADV 106
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 66 ARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYL 125
A+ G TA L+ + G + +K L+ D+ N++ +G + A +GHK+ L
Sbjct: 177 AKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLL 235
Query: 126 LEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKR 162
L V + +DG+ L + A ++A L R
Sbjct: 236 LAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 100 NIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDI 134
N++ G PVHDAA G DT L+E HG D+
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVE--HGADV 102
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYL 125
QD G + +A G L LK+LV++ D+ N G LP+H A GH +L
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 100 NIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDI 134
N++ G PVHDAA G DT L+E HG D+
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVE--HGADV 100
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYL 125
QD G + +A G L LK+LV++ D+ N G LP+H A GH +L
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKD 120
+DN G+ L+A +G+LR ++ LVK+ R+ +G A LYG +
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127
+D G +A G L L+ L++ D+ NI EG LP+H AA GH +L++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 128 VT 129
T
Sbjct: 125 HT 126
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 90 LLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDI 134
LL NPDL + GF +HDAA G DT LLE V+I
Sbjct: 57 LLRGANPDL---KDRTGFAVIHDAARAGFLDTLQTLLENQADVNI 98
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128
D T L+A +R ++LL+++ D+ G G +P+H+A YGH + LL+
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG-GLVPLHNACSYGHYEVTELLLK- 112
Query: 129 THGVDI 134
HG +
Sbjct: 113 -HGACV 117
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 65 LARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHY 124
L + D+HG + + +G +++L+ + + G+ P+H AA +GH+D
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQK 85
Query: 125 LLEVTHGVDIYSGKDGANV 143
LL+ + DI + + NV
Sbjct: 86 LLQ--YKADINAVNEHGNV 102
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 18/130 (13%)
Query: 324 PEVVNEFIMAYDSSSNWSNQDGHTI----------FDHAVLYRREKVFNLIQGVNFTTFL 373
PE + + A ++ SNW + G + YR KV N++ + ++
Sbjct: 7 PEFIGSPVAADEARSNWPKRYGRSTAAKKPDEEEELKARCHYRSAKVDNVVYCLGDDVYV 66
Query: 374 FSSRDKAGNNILHLAGRLVPSSEVAGAALQMQRELQWF-KAIENLVHPFFREATNDLKQT 432
KAG N GR+ E G +WF +A + +++ + + K
Sbjct: 67 -----KAGENEADYIGRITEFFE--GTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHD 119
Query: 433 PREVFTEEHK 442
PR VF E K
Sbjct: 120 PRRVFLSEEK 129
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 18/130 (13%)
Query: 324 PEVVNEFIMAYDSSSNWSNQDGHTI----------FDHAVLYRREKVFNLIQGVNFTTFL 373
PE + + A ++ SNW + G + YR KV N++ + ++
Sbjct: 7 PEFIGSPVAADEARSNWPKRYGRSTAAKKPDEEEELKARCHYRSAKVDNVVYCLGDDVYV 66
Query: 374 FSSRDKAGNNILHLAGRLVPSSEVAGAALQMQRELQWF-KAIENLVHPFFREATNDLKQT 432
KAG N GR+ E G +WF +A + +++ + + K
Sbjct: 67 -----KAGENEADYIGRITEFFE--GTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHD 119
Query: 433 PREVFTEEHK 442
PR VF E K
Sbjct: 120 PRRVFLSEEK 129
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 80 AAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKD 139
AA+G L LK ++ +L N GF P+ A+ +G +T +LLE I + K+
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA-KE 68
Query: 140 GANVLSFLIAANLYDVALDLLKR 162
+ LS D+ LL+R
Sbjct: 69 RESALSLASTGGYTDIVGLLLER 91
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 60 VDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHK 119
+DP T R G T +++ KG++ +++ L++ D N++ G+ P+H+A +GH
Sbjct: 2 IDPFTNHR----GETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHL 56
Query: 120 DTFHYLLE 127
LL+
Sbjct: 57 KVVELLLQ 64
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 80 AAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKD 139
AA+G L LK ++ +L N GF P+ A+ +G +T +LLE I + K+
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA-KE 68
Query: 140 GANVLSFLIAANLYDVALDLLKR 162
+ LS D+ LL+R
Sbjct: 69 RESALSLASTGGYTDIVGLLLER 91
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 82 KGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDI 134
+G+L + L+KY D + I GEG +H AA +GH YL+ VD+
Sbjct: 86 QGHLSMVVQLMKYGADPSLID-GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 72 GHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHG 131
G+T +A G+ +K L+ D+ N R +G P+H AA GH + LL G
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLL--AKG 65
Query: 132 VDIYSGKDGANVLSFLIAANLYDVALDLL 160
D+ + N L N + + LL
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 65 LARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHY 124
L + D+HG + + +G +++L+ + + G+ P+H AA +GH+D
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHRDIVQK 90
Query: 125 LLEVTHGVDIYSGKDGANV 143
LL+ + DI + + NV
Sbjct: 91 LLQ--YKADINAVNEHGNV 107
>pdb|1XYG|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|1XYG|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|1XYG|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|1XYG|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|2Q49|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
Length = 359
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 216 QTNDYHDLDGDIESFIVTSKIHSKESTRFGS---TQQITTTFGAMLHKLHR-MLWNAXMH 271
+ N Y ++ I S+ VT H E + S ++T +F L + R M +
Sbjct: 203 EANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRGMQSTIYVE 262
Query: 272 LSPGIK--GIHDQKLTHMRTVEIVRIICEGVV 301
++PG++ +H Q T E V+++ EGVV
Sbjct: 263 MAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVV 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,404,348
Number of Sequences: 62578
Number of extensions: 669701
Number of successful extensions: 1724
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 171
length of query: 624
length of database: 14,973,337
effective HSP length: 105
effective length of query: 519
effective length of database: 8,402,647
effective search space: 4360973793
effective search space used: 4360973793
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)