Query 006942
Match_columns 624
No_of_seqs 490 out of 4479
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 13:02:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 2.3E-43 7.9E-48 378.3 30.4 358 1-440 21-387 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3.5E-41 1.2E-45 361.3 30.2 339 20-439 6-353 (437)
3 3utm_A Tankyrase-1; tankyrase, 100.0 3.1E-38 1.1E-42 327.5 27.6 270 1-389 31-321 (351)
4 3utm_A Tankyrase-1; tankyrase, 100.0 8.3E-39 2.8E-43 331.8 22.4 306 26-447 21-330 (351)
5 1wdy_A 2-5A-dependent ribonucl 100.0 2.3E-37 7.8E-42 311.0 28.8 262 1-378 12-283 (285)
6 1wdy_A 2-5A-dependent ribonucl 100.0 2.6E-37 8.9E-42 310.5 26.5 248 28-395 4-267 (285)
7 2xai_A ASB-9, ankyrin repeat a 100.0 7.5E-38 2.6E-42 311.4 22.2 246 28-395 2-252 (261)
8 4g8k_A 2-5A-dependent ribonucl 100.0 1.2E-36 3.9E-41 314.6 29.0 275 1-395 32-315 (337)
9 3d9h_A CDNA FLJ77766, highly s 100.0 3.3E-37 1.1E-41 310.9 23.6 245 26-391 12-265 (285)
10 3b7b_A Euchromatic histone-lys 100.0 3.2E-36 1.1E-40 294.8 24.4 215 26-394 8-223 (237)
11 2fo1_E LIN-12 protein; beta-ba 100.0 1.7E-37 5.8E-42 325.4 15.0 254 26-395 91-360 (373)
12 1oy3_D Transcription factor in 100.0 9.3E-37 3.2E-41 306.5 19.5 254 26-395 6-272 (282)
13 2xai_A ASB-9, ankyrin repeat a 100.0 4.7E-36 1.6E-40 298.4 21.9 241 71-439 2-247 (261)
14 1s70_B 130 kDa myosin-binding 100.0 4.5E-37 1.5E-41 311.9 14.4 263 2-391 6-275 (299)
15 3d9h_A CDNA FLJ77766, highly s 100.0 4.5E-36 1.5E-40 302.6 21.6 245 1-368 22-276 (285)
16 4g8k_A 2-5A-dependent ribonucl 100.0 1.5E-35 5E-40 306.3 25.8 274 26-439 22-310 (337)
17 1k1a_A B-cell lymphoma 3-encod 100.0 8.6E-36 3E-40 292.3 22.8 218 26-394 6-229 (241)
18 1yyh_A HN1;, notch 1, ankyrin 100.0 2.9E-36 9.8E-41 298.5 19.1 223 64-395 2-237 (253)
19 3ljn_A Hypothetical protein; a 100.0 4.2E-36 1.4E-40 313.9 18.6 253 26-394 17-302 (364)
20 2dzn_A Probable 26S proteasome 100.0 7.6E-35 2.6E-39 283.1 23.7 212 29-392 2-219 (228)
21 1yyh_A HN1;, notch 1, ankyrin 100.0 3.2E-35 1.1E-39 290.9 21.0 233 21-368 3-246 (253)
22 1oy3_D Transcription factor in 100.0 2.4E-35 8.3E-40 296.1 18.4 254 65-443 2-271 (282)
23 3aji_A 26S proteasome non-ATPa 100.0 1.6E-34 5.6E-39 281.4 23.6 214 27-393 4-217 (231)
24 4b93_B Ankyrin repeat domain-c 100.0 5.4E-35 1.9E-39 291.6 17.7 216 26-393 8-230 (269)
25 2fo1_E LIN-12 protein; beta-ba 100.0 4.1E-35 1.4E-39 307.3 15.8 231 21-368 117-369 (373)
26 3aji_A 26S proteasome non-ATPa 100.0 5E-34 1.7E-38 278.0 20.2 216 1-368 13-228 (231)
27 3kea_A K1L; tropism, ANK repea 100.0 1.2E-33 4.2E-38 284.7 22.9 227 1-394 6-234 (285)
28 3eu9_A Huntingtin-interacting 100.0 1.9E-33 6.6E-38 274.9 22.8 229 25-368 5-233 (240)
29 3b7b_A Euchromatic histone-lys 100.0 6.7E-33 2.3E-37 271.1 24.3 218 64-441 3-221 (237)
30 2f8y_A Notch homolog 1, transl 100.0 2.2E-33 7.6E-38 271.8 20.1 213 5-368 2-214 (223)
31 3ljn_A Hypothetical protein; a 100.0 2.3E-33 7.9E-38 293.0 18.6 223 63-395 11-258 (364)
32 4b93_B Ankyrin repeat domain-c 100.0 1.4E-33 4.8E-38 281.4 15.1 226 1-383 18-251 (269)
33 2dzn_A Probable 26S proteasome 100.0 1.8E-32 6.1E-37 266.3 21.6 215 1-367 9-227 (228)
34 1k1a_A B-cell lymphoma 3-encod 100.0 5.6E-33 1.9E-37 272.2 17.3 217 1-368 16-239 (241)
35 1s70_B 130 kDa myosin-binding 100.0 2.8E-32 9.5E-37 276.6 20.0 268 36-445 4-280 (299)
36 1ikn_D Protein (I-kappa-B-alph 100.0 2.3E-33 7.7E-38 274.5 11.2 219 25-393 4-231 (236)
37 2f8y_A Notch homolog 1, transl 100.0 9.4E-32 3.2E-36 260.4 18.1 201 49-395 3-205 (223)
38 2rfa_A Transient receptor pote 100.0 2.8E-31 9.7E-36 258.7 20.5 145 28-183 2-163 (232)
39 3eu9_A Huntingtin-interacting 100.0 3.9E-31 1.3E-35 258.5 21.2 221 65-395 2-224 (240)
40 3hra_A Ankyrin repeat family p 100.0 1.1E-30 3.7E-35 248.6 23.0 148 26-184 2-150 (201)
41 1sw6_A Regulatory protein SWI6 100.0 3.2E-32 1.1E-36 279.9 13.0 267 16-392 40-327 (327)
42 1ikn_D Protein (I-kappa-B-alph 100.0 6.9E-32 2.3E-36 263.9 12.9 220 66-439 2-228 (236)
43 2rfa_A Transient receptor pote 100.0 5.1E-30 1.7E-34 249.8 19.6 197 71-395 2-211 (232)
44 3kea_A K1L; tropism, ANK repea 100.0 7.4E-30 2.5E-34 257.0 17.3 196 49-395 12-209 (285)
45 2etb_A Transient receptor pote 100.0 3E-30 1E-34 255.5 13.7 144 28-183 1-181 (256)
46 3hra_A Ankyrin repeat family p 100.0 5.2E-29 1.8E-33 236.9 21.5 115 69-184 2-116 (201)
47 1sw6_A Regulatory protein SWI6 100.0 1.6E-30 5.5E-35 267.2 11.9 230 2-356 55-327 (327)
48 2pnn_A Transient receptor pote 100.0 1.8E-30 6.2E-35 259.8 10.6 149 26-184 10-194 (273)
49 4gpm_A Engineered protein OR26 100.0 2.1E-28 7.3E-33 225.6 18.9 124 32-166 6-129 (169)
50 2etb_A Transient receptor pote 100.0 3.1E-29 1.1E-33 248.2 13.9 195 71-395 1-235 (256)
51 4gpm_A Engineered protein OR26 100.0 1.8E-28 6.1E-33 226.1 16.9 152 1-166 11-162 (169)
52 3jxi_A Vanilloid receptor-rela 100.0 3.3E-29 1.1E-33 248.6 12.7 147 26-184 2-186 (260)
53 4hbd_A KN motif and ankyrin re 100.0 1.5E-28 5.2E-33 246.1 15.3 193 28-368 75-273 (276)
54 2pnn_A Transient receptor pote 99.9 1.1E-27 3.9E-32 239.4 14.1 155 1-165 20-218 (273)
55 3v30_A DNA-binding protein rfx 99.9 5.2E-27 1.8E-31 217.4 16.3 170 72-384 2-171 (172)
56 2rfm_A Putative ankyrin repeat 99.9 6.9E-27 2.3E-31 220.7 16.8 164 64-368 27-190 (192)
57 2vge_A RELA-associated inhibit 99.9 1.1E-28 3.9E-33 239.7 3.3 202 53-396 1-203 (229)
58 3jxi_A Vanilloid receptor-rela 99.9 8.5E-28 2.9E-32 238.4 9.6 155 1-165 12-210 (260)
59 3v30_A DNA-binding protein rfx 99.9 7.5E-27 2.6E-31 216.3 15.4 163 1-177 9-171 (172)
60 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.7E-26 5.8E-31 211.5 17.2 127 27-166 3-129 (162)
61 2rfm_A Putative ankyrin repeat 99.9 2.4E-26 8.1E-31 217.0 17.2 149 21-183 28-176 (192)
62 2vge_A RELA-associated inhibit 99.9 2.6E-29 9E-34 244.3 -3.7 158 11-182 2-164 (229)
63 3v31_A Ankyrin repeat family A 99.9 4.4E-26 1.5E-30 210.0 16.6 142 28-182 2-143 (167)
64 3v31_A Ankyrin repeat family A 99.9 8.3E-26 2.9E-30 208.1 17.6 157 71-368 2-158 (167)
65 1ihb_A P18-INK4C(INK6), cyclin 99.9 6.3E-26 2.2E-30 207.7 16.0 156 71-368 4-160 (162)
66 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.5E-25 5E-30 207.0 18.5 160 68-368 10-169 (169)
67 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.9E-25 6.7E-30 206.2 18.2 144 26-182 11-154 (169)
68 4hbd_A KN motif and ankyrin re 99.9 3.8E-26 1.3E-30 228.7 13.8 149 2-162 84-238 (276)
69 2aja_A Ankyrin repeat family p 99.9 5.6E-28 1.9E-32 251.2 0.4 144 26-186 89-237 (376)
70 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.4E-25 1.2E-29 201.5 16.6 140 31-183 3-142 (156)
71 3twr_A Tankyrase-2; ankyrin re 99.9 1.6E-25 5.5E-30 205.7 14.2 161 67-368 3-163 (165)
72 3f6q_A Integrin-linked protein 99.9 2.3E-25 7.9E-30 207.7 15.2 169 70-381 3-171 (179)
73 2aja_A Ankyrin repeat family p 99.9 1E-27 3.6E-32 249.1 -0.9 258 31-440 66-359 (376)
74 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4E-25 1.4E-29 201.0 15.3 147 1-162 9-155 (156)
75 3f6q_A Integrin-linked protein 99.9 3E-25 1E-29 207.0 14.0 154 1-167 12-165 (179)
76 1ycs_B 53BP2, P53BP2; ankyrin 99.9 9.2E-27 3.2E-31 228.0 3.6 141 27-181 3-144 (239)
77 1awc_B Protein (GA binding pro 99.9 9.1E-25 3.1E-29 198.1 16.4 143 31-186 3-145 (153)
78 1awc_B Protein (GA binding pro 99.9 9.3E-25 3.2E-29 198.0 15.6 144 1-159 9-152 (153)
79 3twr_A Tankyrase-2; ankyrin re 99.9 3E-25 1E-29 203.9 11.8 146 26-183 5-150 (165)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.1E-25 1.1E-29 217.1 10.8 184 69-394 2-194 (239)
81 1d9s_A Cyclin-dependent kinase 99.9 4.5E-24 1.5E-28 189.4 12.3 131 20-164 4-135 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 5.8E-24 2E-28 193.5 10.5 143 26-182 9-152 (156)
83 2jab_A H10-2-G3; HER2, darpin, 99.9 5.3E-23 1.8E-27 182.5 13.6 125 26-162 11-135 (136)
84 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.7E-22 6E-27 176.0 15.5 125 28-164 1-125 (126)
85 3t8k_A Uncharacterized protein 99.9 8.7E-24 3E-28 198.0 7.3 147 1-162 13-176 (186)
86 3t8k_A Uncharacterized protein 99.9 4.2E-23 1.4E-27 193.4 9.3 108 72-184 6-125 (186)
87 1d9s_A Cyclin-dependent kinase 99.9 2.5E-22 8.6E-27 178.1 11.6 101 63-166 3-104 (136)
88 3ui2_A Signal recognition part 99.9 9.4E-24 3.2E-28 207.2 2.3 141 26-183 12-153 (244)
89 1bi7_B P16INK4A, MTS1, multipl 99.9 3.2E-22 1.1E-26 181.9 10.8 93 67-162 7-100 (156)
90 3c5r_A BARD-1, BRCA1-associate 99.9 1.6E-22 5.4E-27 179.6 7.6 126 26-163 7-132 (137)
91 3aaa_C Myotrophin, protein V-1 99.9 6.6E-22 2.3E-26 172.1 10.6 117 26-154 4-120 (123)
92 3deo_A Signal recognition part 99.9 6.5E-22 2.2E-26 185.0 11.0 113 68-184 40-153 (183)
93 1n0r_A 4ANK, 4 ankyrin repeats 99.8 2E-20 6.9E-25 162.8 15.6 93 71-165 1-93 (126)
94 2b0o_E UPLC1; arfgap, structur 99.8 4.3E-21 1.5E-25 194.0 12.9 139 28-185 150-297 (301)
95 3deo_A Signal recognition part 99.8 3.7E-21 1.2E-25 179.9 11.0 129 26-185 41-170 (183)
96 3ehr_A Osteoclast-stimulating 99.8 2.2E-21 7.4E-26 187.4 9.1 129 26-166 70-199 (222)
97 3ui2_A Signal recognition part 99.8 4.5E-21 1.5E-25 188.1 10.5 129 26-185 42-171 (244)
98 3c5r_A BARD-1, BRCA1-associate 99.8 2.4E-20 8.2E-25 165.4 11.9 115 67-184 5-119 (137)
99 3aaa_C Myotrophin, protein V-1 99.8 4.6E-20 1.6E-24 160.3 12.7 113 69-184 4-116 (123)
100 2b0o_E UPLC1; arfgap, structur 99.8 1.3E-20 4.4E-25 190.5 9.8 134 1-153 158-299 (301)
101 2jab_A H10-2-G3; HER2, darpin, 99.8 3.9E-20 1.3E-24 163.9 11.8 116 1-129 21-136 (136)
102 1n0q_A 3ANK, 3 ankyrin repeats 99.8 9E-20 3.1E-24 150.0 11.1 92 28-130 1-92 (93)
103 3jue_A Arfgap with coiled-coil 99.8 1.6E-19 5.5E-24 186.8 13.6 145 28-184 198-347 (368)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.8 5.9E-19 2E-23 145.1 11.9 92 71-164 1-92 (93)
105 3lvq_E ARF-GAP with SH3 domain 99.8 5.6E-19 1.9E-23 191.6 13.9 138 27-183 130-276 (497)
106 1dcq_A PYK2-associated protein 99.8 1.1E-18 3.7E-23 174.3 14.8 125 31-164 131-262 (278)
107 1dcq_A PYK2-associated protein 99.8 1E-18 3.5E-23 174.5 13.1 121 1-133 137-265 (278)
108 3ehr_A Osteoclast-stimulating 99.8 9.4E-19 3.2E-23 168.8 10.7 117 65-184 66-183 (222)
109 2l6b_A NR1C; ankyrin, consensu 99.8 5.2E-19 1.8E-23 151.6 7.2 106 26-143 6-111 (115)
110 2l6b_A NR1C; ankyrin, consensu 99.7 2.1E-18 7.2E-23 147.8 8.3 109 67-178 4-112 (115)
111 3lvq_E ARF-GAP with SH3 domain 99.7 8.3E-18 2.9E-22 182.4 11.2 130 1-149 139-276 (497)
112 3jue_A Arfgap with coiled-coil 99.7 2.7E-17 9.3E-22 170.1 13.3 137 1-150 206-347 (368)
113 2zgd_A 3 repeat synthetic anky 99.7 5.2E-17 1.8E-21 137.9 9.9 89 26-125 21-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1.4E-16 4.8E-21 135.2 10.4 95 63-159 15-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 44.7 1.3E+02 0.0045 29.6 10.9 261 26-393 34-308 (351)
116 2iub_A CORA, divalent cation t 26.9 1.4E+02 0.0048 29.6 7.6 21 542-562 305-325 (363)
117 4ev6_A Magnesium transport pro 26.4 2.2E+02 0.0075 27.8 8.9 21 542-562 281-301 (339)
118 1gp8_A Protein (scaffolding pr 20.5 64 0.0022 20.3 2.1 20 313-332 15-34 (40)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-43 Score=378.31 Aligned_cols=358 Identities=16% Similarity=0.077 Sum_probs=276.1
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSA 80 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa 80 (624)
|+..|+.+.|+.++++.. .++.+ +..| .||||+||. .| +.++|++|++.+ .+++.+|.+|.||||+||
T Consensus 21 Aa~~g~~~~v~~Ll~~g~-~~~~~-~~~~-~t~L~~A~~----~g---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 21 ASFMGHLPIVKNLLQRGA-SPNVS-NVKV-ETPLHMAAR----AG---HTEVAKYLLQNK--AKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHTCHHHHHHHHHTTC-CSCCS-SSCC-CCHHHHHHH----HT---CHHHHHHHHHHT--CCSSCCCTTSCCHHHHHH
T ss_pred HHHCCCHHHHHHHHHcCC-CCCCC-CCCC-CCHHHHHHH----cC---CHHHHHHHHhCC--CCCCCCCCCCCCHHHHHH
Confidence 678899999999998743 34455 7889 999999999 99 999999999997 678899999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHH
Q 006942 81 AKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLL 160 (624)
Q Consensus 81 ~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll 160 (624)
..|+.++|++|++++++ ++.+|..|.||||+|+..|+.+++++|++.+.+... .+..|.||||+|+..|+.+++++|+
T Consensus 89 ~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll 166 (437)
T 1n11_A 89 RIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKVRVAELLL 166 (437)
T ss_dssp HHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcC-CCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999999999888 778899999999999999999999999999988877 8899999999999999999999999
Q ss_pred HhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcc
Q 006942 161 KRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKE 240 (624)
Q Consensus 161 ~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (624)
+++.+. +..|..|.||||+|+..++ ...++.++.....+. .
T Consensus 167 ~~g~~~-~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~-------------------------------~ 207 (437)
T 1n11_A 167 ERDAHP-NAAGKNGLTPLHVAVHHNN-------LDIVKLLLPRGGSPH-------------------------------S 207 (437)
T ss_dssp HTTCCT-TCCCSSCCCHHHHHHHTTC-------HHHHHHHGGGTCCSC-------------------------------C
T ss_pred hCCCCC-CCCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCCC-------------------------------C
Confidence 987765 6678899999999998753 344444443322110 0
Q ss_pred cccCCCCcchhhhhhhhhHHHHHHhhhccCCCC--------CCccchHhhhhhhhhHHHHHHHHHhhcccccccCCcccc
Q 006942 241 STRFGSTQQITTTFGAMLHKLHRMLWNAXMHLS--------PGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLS 312 (624)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~ 312 (624)
... ...+.++.+....+.+.++.+...+. ......++...++...+++|. +.....+. .+..|.
T Consensus 208 ~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll---~~~~~~~~-~~~~g~ 279 (437)
T 1n11_A 208 PAW----NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL---SKQANGNL-GNKSGL 279 (437)
T ss_dssp CCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH---TTTCCTTC-CCTTCC
T ss_pred cCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH---hcCCCCCC-CCCCCC
Confidence 000 11122333333333333333322211 112234555666666655554 33332222 677889
Q ss_pred HHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhcC
Q 006942 313 VAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLV 392 (624)
Q Consensus 313 tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~ 392 (624)
||||+|+..|+.++++.|+++ +.++...|..|+||||+|+.+|+.+++++|++.+ ..+|.+|..|+||||+|++.|
T Consensus 280 t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---ad~n~~~~~g~t~L~~A~~~g 355 (437)
T 1n11_A 280 TPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ---ADVNAKTKLGYSPLHQAAQQG 355 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHhC-CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC---CCCCCCCCCCCCHHHHHHHCC
Confidence 999999999999999999999 8888767999999999999999999999999998 667799999999999999999
Q ss_pred CCCCccchHHHhHHHHhHHHHHHhhcC-cccccccCCCCCChhhhhhHH
Q 006942 393 PSSEVAGAALQMQRELQWFKAIENLVH-PFFREATNDLKQTPREVFTEE 440 (624)
Q Consensus 393 ~~~~~~gaalq~~~~l~~~~~v~~~~~-~~~~~~~N~~G~Tp~dl~~~~ 440 (624)
+.+ .|+.++. ....+.+|.+|+||++++.+.
T Consensus 356 ~~~-----------------iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 387 (437)
T 1n11_A 356 HTD-----------------IVTLLLKNGASPNEVSSDGTTPLAIAKRL 387 (437)
T ss_dssp CHH-----------------HHHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred hHH-----------------HHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence 843 1222222 235788999999999998654
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.5e-41 Score=361.31 Aligned_cols=339 Identities=15% Similarity=0.117 Sum_probs=262.0
Q ss_pred ccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 006942 20 ALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLT 99 (624)
Q Consensus 20 ~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~ 99 (624)
.++.. +.+| .||||+||. .| +.++|++|++.+ .+++..|..|.||||+||..|+.++|++|++++++ +
T Consensus 6 ~~~~~-~~~g-~t~L~~Aa~----~g---~~~~v~~Ll~~g--~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~ 73 (437)
T 1n11_A 6 SGGGG-GESG-LTPLHVASF----MG---HLPIVKNLLQRG--ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-V 73 (437)
T ss_dssp -----------CCHHHHHHH----HT---CHHHHHHHHHTT--CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-S
T ss_pred Ccccc-CCCC-CCHHHHHHH----CC---CHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-C
Confidence 44455 8899 999999999 99 999999999997 67788999999999999999999999999999988 7
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHH
Q 006942 100 NIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILN 179 (624)
Q Consensus 100 ~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh 179 (624)
+.+|..|.||||+|+..|+.+++++|++++++.+. .+..|.||||+|+..|+.++++.|++.+.+. ...+..|.||||
T Consensus 74 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~ 151 (437)
T 1n11_A 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL-ATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLH 151 (437)
T ss_dssp SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHH
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHH
Confidence 88999999999999999999999999999999888 8999999999999999999999999987765 556888999999
Q ss_pred HHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhH
Q 006942 180 TLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLH 259 (624)
Q Consensus 180 ~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (624)
+|+..++ ...++.++.....+ .... ....+.++.++..
T Consensus 152 ~A~~~g~-------~~~v~~Ll~~g~~~-------------------------------~~~~----~~g~t~L~~A~~~ 189 (437)
T 1n11_A 152 VAAKYGK-------VRVAELLLERDAHP-------------------------------NAAG----KNGLTPLHVAVHH 189 (437)
T ss_dssp HHHHTTC-------HHHHHHHHHTTCCT-------------------------------TCCC----SSCCCHHHHHHHT
T ss_pred HHHHcCC-------HHHHHHHHhCCCCC-------------------------------CCCC----CCCCCHHHHHHHc
Confidence 9998853 45555554433211 0000 1112334444444
Q ss_pred HHHHHhhhccCCCCC--------CccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHH
Q 006942 260 KLHRMLWNAXMHLSP--------GIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFI 331 (624)
Q Consensus 260 ~~~~~~~~~~~~~~~--------~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll 331 (624)
.+.+.++.+...+.. .....++...++...++.|........ ..+..|.||||+|+..|+.+++++|+
T Consensus 190 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----~~~~~g~t~L~~A~~~g~~~~v~~Ll 265 (437)
T 1n11_A 190 NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN----AESVQGVTPLHLAAQEGHAEMVALLL 265 (437)
T ss_dssp TCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----CCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----CCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 445555444433211 122345556666666665554333222 36778899999999999999999999
Q ss_pred HccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhcCCCCCccchHHHhHHHHhHH
Q 006942 332 MAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVPSSEVAGAALQMQRELQWF 411 (624)
Q Consensus 332 ~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~gaalq~~~~l~~~ 411 (624)
++ +++....|..|+||||+|+..|+.+++++|++.+ ..+|.+|..|+||||+|+..|+.++
T Consensus 266 ~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~g~~~~--------------- 326 (437)
T 1n11_A 266 SK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG---VMVDATTRMGYTPLHVASHYGNIKL--------------- 326 (437)
T ss_dssp TT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT---CCTTCCCSSCCCHHHHHHHSSCSHH---------------
T ss_pred hc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC---ccCCCCCCCCCCHHHHHHHcCcHHH---------------
Confidence 99 8888766999999999999999999999999988 5677999999999999999998641
Q ss_pred HHHHhhcC-cccccccCCCCCChhhhhhH
Q 006942 412 KAIENLVH-PFFREATNDLKQTPREVFTE 439 (624)
Q Consensus 412 ~~v~~~~~-~~~~~~~N~~G~Tp~dl~~~ 439 (624)
|+.++. ...++.+|..|.||++++..
T Consensus 327 --v~~Ll~~gad~n~~~~~g~t~L~~A~~ 353 (437)
T 1n11_A 327 --VKFLLQHQADVNAKTKLGYSPLHQAAQ 353 (437)
T ss_dssp --HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred --HHHHHhcCCCCCCCCCCCCCHHHHHHH
Confidence 222222 23578899999999999765
No 3
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.1e-38 Score=327.47 Aligned_cols=270 Identities=14% Similarity=0.091 Sum_probs=178.4
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSA 80 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa 80 (624)
||..|+.+.++.++.+.+..++.+ +..| +||||+||. .| +.++|++|++.+ .+++.+|..|.||||+|+
T Consensus 31 A~~~g~~~~v~~ll~~~~~~~~~~-d~~g-~t~L~~A~~----~g---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~ 99 (351)
T 3utm_A 31 AARSGNEEKLMALLTPLNVNCHAS-DGRK-STPLHLAAG----YN---RVRIVQLLLQHG--ADVHAKDKGGLVPLHNAC 99 (351)
T ss_dssp HHHHTCHHHHHHHCCTTTTTCCCS-STTC-CCHHHHHHH----TT---CHHHHHHHHHTT--CCTTCCCTTCCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHhcCCCcccC-CCCC-CCHHHHHHH----cC---CHHHHHHHHHcC--CCCCccCCCCCcHHHHHH
Confidence 355566666666666555555444 5566 666666666 66 666666666664 455566666666666666
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHH------------
Q 006942 81 AKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLI------------ 148 (624)
Q Consensus 81 ~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~------------ 148 (624)
..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++++++... .+..|.||+|.|+
T Consensus 100 ~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~~~l~~a~~~~~~~~~~~~~ 177 (351)
T 3utm_A 100 SYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL-VNCHGKSAVDMAPTPELRERLTYEF 177 (351)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-ccCCCCcchHHHhhhhhHHHHHhhh
Confidence 66666666666666555 555566666666666666666666666666666555 5666666655443
Q ss_pred ---------HhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCC
Q 006942 149 ---------AANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTND 219 (624)
Q Consensus 149 ---------~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 219 (624)
..+..+.+..++.... .....+..|.||||+|+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~t~L~~A~~~~---------------------------------- 222 (351)
T 3utm_A 178 KGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASL---------------------------------- 222 (351)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTTCC-TTCCCTTTCCCHHHHHHHCC----------------------------------
T ss_pred cccHHHHHHHhccHHHHHHHHHhhc-ccccCCCCCCCHHHHHHHHh----------------------------------
Confidence 2333333444433322 12234455666666666442
Q ss_pred CCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhh
Q 006942 220 YHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEG 299 (624)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~ 299 (624)
+....++++.+.+.
T Consensus 223 ------------------------------------------------------------------~~~~~~~~~~Ll~~ 236 (351)
T 3utm_A 223 ------------------------------------------------------------------HPKRKQVAELLLRK 236 (351)
T ss_dssp ------------------------------------------------------------------STTHHHHHHHHHHT
T ss_pred ------------------------------------------------------------------CccHHHHHHHHHHc
Confidence 11123334444443
Q ss_pred cccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccC
Q 006942 300 VVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDK 379 (624)
Q Consensus 300 ~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~ 379 (624)
....+ ..+..|.||||+|+..|+.++++.|+++ +.++...|..|+||||+|+.+|+.+++++|++.| ..++.+|.
T Consensus 237 g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g---ad~~~~~~ 311 (351)
T 3utm_A 237 GANVN-EKNKDFMTPLHVAAERAHNDVMEVLHKH-GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG---SDPSIISL 311 (351)
T ss_dssp TCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCT
T ss_pred CCCcC-CcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC---CCCCCcCC
Confidence 33222 2677899999999999999999999999 9988877999999999999999999999999998 55679999
Q ss_pred CCCchhhhhh
Q 006942 380 AGNNILHLAG 389 (624)
Q Consensus 380 ~GnTpLHlAa 389 (624)
+|+||||+|.
T Consensus 312 ~g~tal~~a~ 321 (351)
T 3utm_A 312 QGFTAAQMGN 321 (351)
T ss_dssp TSCCHHHHSC
T ss_pred CCCChhhhhh
Confidence 9999999994
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=8.3e-39 Score=331.77 Aligned_cols=306 Identities=16% Similarity=0.110 Sum_probs=242.8
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGE 105 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~ 105 (624)
+..| .|+||.||+ .| +.+.|+.|+... +.+++.+|..|.||||+||..|+.++|++|++++++ ++.+|..
T Consensus 21 ~~~~-~~~L~~A~~----~g---~~~~v~~ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~ 90 (351)
T 3utm_A 21 GEYK-KDELLEAAR----SG---NEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKG 90 (351)
T ss_dssp HHHH-HHHHHHHHH----HT---CHHHHHHHCCTT-TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred cccc-chhHHHHHH----cC---CHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCC
Confidence 5678 999999999 99 999999999874 577899999999999999999999999999999988 8889999
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCC
Q 006942 106 GFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKP 185 (624)
Q Consensus 106 G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~ 185 (624)
|.||||+|+..|+.+++++|++++++.+. .+..|.||||+|+..|+.+++++|++.+.+. ...+..|.||+|+++..+
T Consensus 91 g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~ 168 (351)
T 3utm_A 91 GLVPLHNACSYGHYEVTELLLKHGACVNA-MDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPE 168 (351)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHH
T ss_pred CCcHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhh
Confidence 99999999999999999999999999888 8999999999999999999999999998765 667899999999987542
Q ss_pred CCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHh
Q 006942 186 YAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRML 265 (624)
Q Consensus 186 ~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (624)
..+.+.+... ...
T Consensus 169 ----------~~~~~~~~~~--------------------------------------------~~~------------- 181 (351)
T 3utm_A 169 ----------LRERLTYEFK--------------------------------------------GHS------------- 181 (351)
T ss_dssp ----------HHHHHHHHHH--------------------------------------------HHH-------------
T ss_pred ----------hHHHHHhhhc--------------------------------------------ccH-------------
Confidence 1111000000 000
Q ss_pred hhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHc---CCHHHHHHHHHccCCCceecC
Q 006942 266 WNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAIL---GIPEVVNEFIMAYDSSSNWSN 342 (624)
Q Consensus 266 ~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~d~~~~d 342 (624)
.......++. ..+..+..... .....+..|.||||+|+.. ++.++++.|++. +.++...|
T Consensus 182 ------------~~~~~~~~~~---~~~~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~ 244 (351)
T 3utm_A 182 ------------LLQAAREADL---AKVKKTLALEI-INFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKN 244 (351)
T ss_dssp ------------HHHHHHTTCH---HHHHHHTTTCC-TTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCC
T ss_pred ------------HHHHHHhccH---HHHHHHHHhhc-ccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcC
Confidence 0000111111 11111111111 1233667889999999999 668999999999 98888779
Q ss_pred CCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhcCCCCCccchHHHhHHHHhHHHHHHhhcC-cc
Q 006942 343 QDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVPSSEVAGAALQMQRELQWFKAIENLVH-PF 421 (624)
Q Consensus 343 ~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~gaalq~~~~l~~~~~v~~~~~-~~ 421 (624)
..|+||||+|+.+|+.+++++|++.+ ..+|.+|..|+||||+|+..|+.+ .|+.++. ..
T Consensus 245 ~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~n~~d~~g~t~L~~A~~~~~~~-----------------~v~~Ll~~ga 304 (351)
T 3utm_A 245 KDFMTPLHVAAERAHNDVMEVLHKHG---AKMNALDSLGQTALHRAALAGHLQ-----------------TCRLLLSYGS 304 (351)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHHTCHH-----------------HHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHcCcHH-----------------HHHHHHHcCC
Confidence 99999999999999999999999998 667799999999999999999853 1222222 23
Q ss_pred cccccCCCCCChhhhhhHHHHHhHHH
Q 006942 422 FREATNDLKQTPREVFTEEHKELVKE 447 (624)
Q Consensus 422 ~~~~~N~~G~Tp~dl~~~~~~~l~~~ 447 (624)
..+.+|.+|+||++++.+...++..+
T Consensus 305 d~~~~~~~g~tal~~a~~~~~~~l~~ 330 (351)
T 3utm_A 305 DPSIISLQGFTAAQMGNEAVQQILSE 330 (351)
T ss_dssp CTTCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred CCCCcCCCCCChhhhhhHHHHHHHHh
Confidence 57889999999999987766665544
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-37 Score=310.98 Aligned_cols=262 Identities=18% Similarity=0.158 Sum_probs=180.9
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSA 80 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa 80 (624)
|+..|+.+.++.++++.+.. +...+..| .||||+|+. .| +.+++++|++.+ .+++.+|.+|.||||+|+
T Consensus 12 A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g-~t~L~~A~~----~g---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 12 AVQNEDVDLVQQLLEGGANV-NFQEEEGG-WTPLHNAVQ----MS---REDIVELLLRHG--ADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTTC-CCHHHHHHH----TT---CHHHHHHHHHTT--CCTTCCCTTCCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCc-ccccCCCC-CcHHHHHHH----cC---CHHHHHHHHHcC--CCCcccCCCCCCHHHHHH
Confidence 56677888888777775543 22225667 788888888 88 888888888776 566777777888888888
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCcccc----------CCCCCcHHHHHHHh
Q 006942 81 AKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYS----------GKDGANVLSFLIAA 150 (624)
Q Consensus 81 ~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~----------~~~G~t~Lh~A~~~ 150 (624)
..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++.+.+.+. . +..|.||||.|+..
T Consensus 81 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~~~~~~~~~g~t~L~~A~~~ 158 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL-RRKTKEDQERLRKGGATALMDAAEK 158 (285)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCccc-ccccHHHHHhhccCCCcHHHHHHHc
Confidence 88888888888887776 667777788888888888888888888887776655 3 66777888888888
Q ss_pred CcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhh
Q 006942 151 NLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESF 230 (624)
Q Consensus 151 ~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (624)
|+.++++.|++..+...+..|..|.||||+|+..+...
T Consensus 159 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~------------------------------------------ 196 (285)
T 1wdy_A 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS------------------------------------------ 196 (285)
T ss_dssp TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTT------------------------------------------
T ss_pred CCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccc------------------------------------------
Confidence 88888888887744445667777888888877653200
Q ss_pred hhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCcc
Q 006942 231 IVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQ 310 (624)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~ 310 (624)
...++++.+.+.....+ ..+..
T Consensus 197 ---------------------------------------------------------~~~~i~~~Ll~~g~~~~-~~~~~ 218 (285)
T 1wdy_A 197 ---------------------------------------------------------DVEAITHLLLDHGADVN-VRGER 218 (285)
T ss_dssp ---------------------------------------------------------THHHHHHHHHHTTCCSS-CCCTT
T ss_pred ---------------------------------------------------------hHHHHHHHHHHcCCCCC-CcCCC
Confidence 01122222222222112 25566
Q ss_pred ccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCcccccccccc
Q 006942 311 LSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRD 378 (624)
Q Consensus 311 g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D 378 (624)
|.||||+|+..|+.++++.|++..+.++...|..|+||||+|+.+++.+++++|+++| ..++.+|
T Consensus 219 g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G---a~~~~~d 283 (285)
T 1wdy_A 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG---ASTDCGD 283 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS---SCSCCSS
T ss_pred CCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcC---CCCCccc
Confidence 7788888888888888888887315555544778888888888888888888888777 3344554
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-37 Score=310.53 Aligned_cols=248 Identities=17% Similarity=0.120 Sum_probs=215.1
Q ss_pred CCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccC-CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCC
Q 006942 28 PGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQ-DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEG 106 (624)
Q Consensus 28 ~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G 106 (624)
+| .||||.|++ .| +.++|+.|++.+ .+++.+ +..|.||||+|+..|+.+++++|++++++ ++.+|..|
T Consensus 4 ~g-~~~L~~A~~----~g---~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g 72 (285)
T 1wdy_A 4 ED-NHLLIKAVQ----NE---DVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNG 72 (285)
T ss_dssp HH-HHHHHHHHH----TT---CHHHHHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTC
T ss_pred cc-chHHHHHHH----cC---CHHHHHHHHHcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCC
Confidence 56 999999999 99 999999999997 566666 88899999999999999999999999888 77899999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCccc---------CCCCCCH
Q 006942 107 FLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDS---------IDSRRII 177 (624)
Q Consensus 107 ~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~---------d~~G~Tp 177 (624)
.||||+|+..|+.+++++|++++.+.+. .+..|.||||+|+..|+.+++++|++.+.+..... +..|.||
T Consensus 73 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 73 ATPFLLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcH
Confidence 9999999999999999999999999888 89999999999999999999999999987764332 7789999
Q ss_pred HHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhh
Q 006942 178 LNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAM 257 (624)
Q Consensus 178 Lh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (624)
||+|+..++
T Consensus 152 L~~A~~~~~----------------------------------------------------------------------- 160 (285)
T 1wdy_A 152 LMDAAEKGH----------------------------------------------------------------------- 160 (285)
T ss_dssp HHHHHHHTC-----------------------------------------------------------------------
T ss_pred HHHHHHcCC-----------------------------------------------------------------------
Confidence 999997642
Q ss_pred hHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhh-cccccccCCccccHHHHHHHHcCC----HHHHHHHHH
Q 006942 258 LHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEG-VVWTNFQNSAQLSVAMLAAAILGI----PEVVNEFIM 332 (624)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~-~~~~~~~~~~~g~tpLh~Aa~~g~----~~iv~~Ll~ 332 (624)
.++++.+.+. ... ....+..|.||||.|+..|+ .++++.|++
T Consensus 161 --------------------------------~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~ 207 (285)
T 1wdy_A 161 --------------------------------VEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207 (285)
T ss_dssp --------------------------------HHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHH
Confidence 1122222222 111 11267789999999999999 999999999
Q ss_pred ccCCCceecCCCCCcHHHHHHHcCChhHHHHHhc-CCccccccccccCCCCchhhhhhhcCCCC
Q 006942 333 AYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQG-VNFTTFLFSSRDKAGNNILHLAGRLVPSS 395 (624)
Q Consensus 333 ~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~-~~~~~~~vn~~D~~GnTpLHlAa~~~~~~ 395 (624)
. +.++...|..|+||||+|+.+|+.+++++|++ .+ ..+|.+|.+|+||||+|++.++.+
T Consensus 208 ~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g---~~~~~~~~~g~t~l~~A~~~~~~~ 267 (285)
T 1wdy_A 208 H-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH---IEINDTDSDGKTALLLAVELKLKK 267 (285)
T ss_dssp T-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS---CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred c-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccC---CCccccCCCCCcHHHHHHHcCcHH
Confidence 9 98888679999999999999999999999998 55 457799999999999999999853
No 7
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=7.5e-38 Score=311.42 Aligned_cols=246 Identities=15% Similarity=0.065 Sum_probs=210.6
Q ss_pred CCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCC
Q 006942 28 PGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGF 107 (624)
Q Consensus 28 ~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~ 107 (624)
+| +||||+||. .| +.++|+.|++.+ .+++.+|.+|.||||+|+..|+.+++++|++++++ ++.+|..|.
T Consensus 2 ~g-~t~L~~A~~----~g---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~ 70 (261)
T 2xai_A 2 SD-WSPMHEAAI----HG---HQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWH 70 (261)
T ss_dssp ---CCHHHHHHH----HT---CHHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred CC-CCHHHHHHH----cC---CHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCC
Confidence 57 999999999 99 999999999997 67899999999999999999999999999999988 888999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCC
Q 006942 108 LPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYA 187 (624)
Q Consensus 108 TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~ 187 (624)
||||+|+..|+.+++++|++.+++.+ .+.+|.||||+|+..|+.++++.|++.+.++ +.+|.+|.||||+|+..++
T Consensus 71 t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~- 146 (261)
T 2xai_A 71 TPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQ- 146 (261)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTC-
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCC-
Confidence 99999999999999999999998877 4667999999999999999999999998775 6689999999999997742
Q ss_pred CCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhh
Q 006942 188 FASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWN 267 (624)
Q Consensus 188 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (624)
T Consensus 147 -------------------------------------------------------------------------------- 146 (261)
T 2xai_A 147 -------------------------------------------------------------------------------- 146 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCc
Q 006942 268 AXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHT 347 (624)
Q Consensus 268 ~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T 347 (624)
...+++|.....+.. .+..|.||||+|+..|+.++++.|+++ +++....|.+|+|
T Consensus 147 -------------------~~~v~~Ll~~g~~~~-----~~~~g~t~Lh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t 201 (261)
T 2xai_A 147 -------------------RACVKKLLESGADVN-----QGKGQDSPLHAVARTASEELACLLMDF-GADTQAKNAEGKR 201 (261)
T ss_dssp -------------------HHHHHHHHHHTCCTT-----CCBTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred -------------------HHHHHHHHHcCCCCC-----CCCCCCChHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCC
Confidence 113333333222222 477889999999999999999999999 9998767999999
Q ss_pred HHHHHHHcCChhHHHHHhcCCccc-----cccccccCCCCchhhhhhhcCCCC
Q 006942 348 IFDHAVLYRREKVFNLIQGVNFTT-----FLFSSRDKAGNNILHLAGRLVPSS 395 (624)
Q Consensus 348 ~Lh~A~~~~~~~iv~~Ll~~~~~~-----~~vn~~D~~GnTpLHlAa~~~~~~ 395 (624)
|||+|+.++ +++++|++.+... ..++.+|..|+||||+|++...++
T Consensus 202 pl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~ 252 (261)
T 2xai_A 202 PVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPE 252 (261)
T ss_dssp GGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCH
T ss_pred hhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcH
Confidence 999999654 5899999876211 246688999999999999887653
No 8
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.2e-36 Score=314.63 Aligned_cols=275 Identities=18% Similarity=0.152 Sum_probs=181.5
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSA 80 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa 80 (624)
||++||.+.|+.||+.+. +++.+-+..| +||||+||. .| +.++|++|++++ ++++.++..+.+|+|.++
T Consensus 32 Av~~g~~~~V~~LL~~Ga-dvn~~~~~~g-~TpLh~A~~----~g---~~~iv~~Ll~~g--a~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 32 AVQNEDVDLVQQLLEGGA-NVNFQEEEGG-WTPLHNAVQ----MS---REDIVELLLRHG--ADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHTTCHHHHHHHHHHTC-CTTCCCTTTC-CCHHHHHHH----TT---CHHHHHHHHHTT--CCTTCCCTTCCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCC-CCCccCCCCC-cCHHHHHHH----cC---CHHHHHHHHHcC--CchhhhccCCCchhHHHH
Confidence 456666666666666532 2333312345 666666666 66 666666666665 455666666666666666
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccc---------cCCCCCcHHHHHHHhC
Q 006942 81 AKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIY---------SGKDGANVLSFLIAAN 151 (624)
Q Consensus 81 ~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~---------~~~~G~t~Lh~A~~~~ 151 (624)
..++.++++.+++.+++ ++.+|..|.||||+|+..|+.+++++|++.+++.+.. .+..|.||||+|+..|
T Consensus 101 ~~~~~~~~~~~~~~~~~-~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 101 IAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHTCHHHHHHHHTTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred hcccchhhHHhhhccch-hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence 66666666666666665 5566666777777777777777777777666554431 3445667777777777
Q ss_pred cHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhh
Q 006942 152 LYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFI 231 (624)
Q Consensus 152 ~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (624)
+.++++.|+++.+...+.+|..|.||+|.++....
T Consensus 180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~--------------------------------------------- 214 (337)
T 4g8k_A 180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSD--------------------------------------------- 214 (337)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSC---------------------------------------------
T ss_pred CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcC---------------------------------------------
Confidence 77777777655443445566667777666553210
Q ss_pred hhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccc
Q 006942 232 VTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQL 311 (624)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g 311 (624)
......+++.+.+...+.+ ..+..|
T Consensus 215 ------------------------------------------------------~~~~~~i~~lLl~~gad~n-~~d~~g 239 (337)
T 4g8k_A 215 ------------------------------------------------------DSDVEAITHLLLDHGADVN-VRGERG 239 (337)
T ss_dssp ------------------------------------------------------TTTHHHHHHHHHHTTCCTT-CCCGGG
T ss_pred ------------------------------------------------------cccHHHHHHHHHHCCCCCC-CcCCCC
Confidence 0001112222333332222 267889
Q ss_pred cHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhc
Q 006942 312 SVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRL 391 (624)
Q Consensus 312 ~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~ 391 (624)
.||||+|+..|+.++++.|++..+.++...|.+|+||||+|+++|+.+++++|+++| ..+| +.||||+|++.
T Consensus 240 ~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G---Ad~n-----~~~~L~~A~~~ 311 (337)
T 4g8k_A 240 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG---ASTD-----CGDLVMTARRN 311 (337)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS---CSST-----TCCHHHHHHHT
T ss_pred CCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCC-----CCCHHHHHHHc
Confidence 999999999999999999998624455544999999999999999999999999998 3333 45699999999
Q ss_pred CCCC
Q 006942 392 VPSS 395 (624)
Q Consensus 392 ~~~~ 395 (624)
|+.+
T Consensus 312 ~~~~ 315 (337)
T 4g8k_A 312 YDHS 315 (337)
T ss_dssp TCHH
T ss_pred CCHH
Confidence 9854
No 9
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=310.85 Aligned_cols=245 Identities=14% Similarity=0.080 Sum_probs=187.2
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccC---------chhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVD---------PETLARQDNHGHTAATLSAAKGNLRALKLLVKYNP 96 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~---------~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~ 96 (624)
...| .|+||+|+. .| +.+.+..++..+. ...++.+|.+|.||||+||..|+.++++.|++.++
T Consensus 12 ~~~~-~~~lH~Aa~----~g---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~ 83 (285)
T 3d9h_A 12 SGLV-PRGSHMASM----DG---KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW 83 (285)
T ss_dssp --------------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred chHH-HHHHHHHhh----cC---CCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 5678 999999999 99 9777777665431 13367789999999999999999999999999998
Q ss_pred CCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCC
Q 006942 97 DLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRI 176 (624)
Q Consensus 97 ~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~T 176 (624)
+ ++.+|.+|.||||+|+..|+.+++++|++.+++.+. ++.+|.||||+|+..|+.++++.|++.+.+.. .+.+|.|
T Consensus 84 ~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t 159 (285)
T 3d9h_A 84 A-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLAS 159 (285)
T ss_dssp C-SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSC
T ss_pred C-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCC
Confidence 8 788999999999999999999999999999999888 89999999999999999999999999987753 3456999
Q ss_pred HHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhh
Q 006942 177 ILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGA 256 (624)
Q Consensus 177 pLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (624)
|||+|+..++
T Consensus 160 ~L~~A~~~g~---------------------------------------------------------------------- 169 (285)
T 3d9h_A 160 PIHEAARRGH---------------------------------------------------------------------- 169 (285)
T ss_dssp HHHHHHHHTC----------------------------------------------------------------------
T ss_pred HHHHHHHcCC----------------------------------------------------------------------
Confidence 9999997642
Q ss_pred hhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCC
Q 006942 257 MLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDS 336 (624)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~ 336 (624)
...+++| .+.....+ ..+..|.||||+|+..|+.++++.|++. ++
T Consensus 170 ------------------------------~~~v~~L---l~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga 214 (285)
T 3d9h_A 170 ------------------------------VECVNSL---IAYGGNID-HKISHLGTPLYLACENQQRACVKKLLES-GA 214 (285)
T ss_dssp ------------------------------HHHHHHH---HHTTCCTT-CCBTTTBCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred ------------------------------HHHHHHH---HHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHC-CC
Confidence 1122222 22222112 3677899999999999999999999999 88
Q ss_pred CceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhc
Q 006942 337 SSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRL 391 (624)
Q Consensus 337 d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~ 391 (624)
+.. .|..|+||||+|+.+++.+++++|++.+ ..++.+|.+|+||||+|+..
T Consensus 215 ~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 215 DVN-QGKGQDSPLHAVVRTASEELACLLMDFG---ADTQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp CTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCGGGGSCTT
T ss_pred CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHhcCc
Confidence 876 4889999999999999999999999998 56779999999999999943
No 10
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.2e-36 Score=294.78 Aligned_cols=215 Identities=19% Similarity=0.177 Sum_probs=190.0
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGE 105 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~ 105 (624)
+.+| .||||+||. .| +.+++++|++.+ .+++..|..|.||||+|+..|+.+++++|++++.+ ++.+|..
T Consensus 8 ~~~g-~t~L~~A~~----~g---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 76 (237)
T 3b7b_A 8 HQNK-RSPLHAAAE----AG---HVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAE 76 (237)
T ss_dssp SCCS-CCHHHHHHH----HT---CHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTT
T ss_pred cCCC-CCHHHHHHH----cC---cHHHHHHHHHcC--CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCC
Confidence 7788 999999999 99 999999999987 67788899999999999999999999999999887 7788899
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcC
Q 006942 106 GFLPVHDAALYGHKDTFHYLLEVT-HGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQK 184 (624)
Q Consensus 106 G~TPLh~Aa~~g~~~iv~~Ll~~~-~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~ 184 (624)
|.||||+|+..|+.+++++|++.+ .+.+. .+..|.||||+|+..++.++++.|++.+.++ +.
T Consensus 77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~--------------- 139 (237)
T 3b7b_A 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNC-QDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NI--------------- 139 (237)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHTTTCCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TC---------------
T ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCccc-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-Cc---------------
Confidence 999999999999999999999998 45555 7889999999999999999999999876543 11
Q ss_pred CCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHH
Q 006942 185 PYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRM 264 (624)
Q Consensus 185 ~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (624)
T Consensus 140 -------------------------------------------------------------------------------- 139 (237)
T 3b7b_A 140 -------------------------------------------------------------------------------- 139 (237)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCC
Q 006942 265 LWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQD 344 (624)
Q Consensus 265 ~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~ 344 (624)
.+..|.||||+|+..|+.++++.|++. ++++...|..
T Consensus 140 ------------------------------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~ 176 (237)
T 3b7b_A 140 ------------------------------------------RDNEENICLHWAAFSGCVDIAEILLAA-KCDLHAVNIH 176 (237)
T ss_dssp ------------------------------------------CCTTSCCHHHHHHHHCCHHHHHHHHTT-TCCTTCCCTT
T ss_pred ------------------------------------------cCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCC
Confidence 345567888888899999999999999 9988877999
Q ss_pred CCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhcCCC
Q 006942 345 GHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVPS 394 (624)
Q Consensus 345 G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~~~ 394 (624)
|+||||+|+.+++.+++++|++.+ ..++.+|.+|+||||+|+..++.
T Consensus 177 g~t~L~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 177 GDSPLHIAARENRYDCVVLFLSRD---SDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHTTT---CCTTCCCTTSCCHHHHSCTTCHH
T ss_pred CCCHHHHHHHhCCHhHHHHHHHcC---CCCCccCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999998 55779999999999999998864
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-37 Score=325.42 Aligned_cols=254 Identities=14% Similarity=0.084 Sum_probs=205.8
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCC-CCCChHHHHHHHcCCHHHHHHHH--------hcCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQD-NHGHTAATLSAAKGNLRALKLLV--------KYNP 96 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~iv~~Ll--------~~~~ 96 (624)
+..| .||||.||. .| + ++++.|++ .+++.+| ..|.||||+||..|+.++++.|+ +.+.
T Consensus 91 ~~~g-~t~L~~Aa~----~~---~-~~~~~L~~----~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga 157 (373)
T 2fo1_E 91 EPES-PIKLHTEAA----GS---Y-AITEPITR----ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA 157 (373)
T ss_dssp ---C-CCHHHHHHH----SS---S-CCCSCCST----TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC
T ss_pred CCCC-ccHHHHHhc----CC---c-hHHHHhcc----ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCC
Confidence 7789 999999999 77 6 67777654 4677888 79999999999999998888776 6677
Q ss_pred CCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCC--CCCcccCCCC
Q 006942 97 DLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHP--TIGRDSIDSR 174 (624)
Q Consensus 97 ~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~--~l~~~~d~~G 174 (624)
+ ++.+|..|.||||+|+..|+.++|++|++.+++.+. .+..|.||||+|+..|+.++++.|++... ...+..|.+|
T Consensus 158 ~-vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g 235 (373)
T 2fo1_E 158 D-VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG 235 (373)
T ss_dssp C-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred C-CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc-cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCC
Confidence 7 789999999999999999999999999999999988 89999999999999999999999998752 2346678999
Q ss_pred CCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhh
Q 006942 175 RIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTF 254 (624)
Q Consensus 175 ~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (624)
.||||+|+..+.. ..+..
T Consensus 236 ~t~L~~A~~~~~~----~~~~~---------------------------------------------------------- 253 (373)
T 2fo1_E 236 MTALMIVAHNEGR----DQVAS---------------------------------------------------------- 253 (373)
T ss_dssp CCHHHHHHHSCST----THHHH----------------------------------------------------------
T ss_pred CCHHHHHHHhCCc----chHHH----------------------------------------------------------
Confidence 9999999976310 01112
Q ss_pred hhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhccc----ccccCCccccHHHHHHHHcCCHHHHHHH
Q 006942 255 GAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVW----TNFQNSAQLSVAMLAAAILGIPEVVNEF 330 (624)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~----~~~~~~~~g~tpLh~Aa~~g~~~iv~~L 330 (624)
+++|.....+... .....+..|.||||+|+..|+.++|++|
T Consensus 254 -----------------------------------v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L 298 (373)
T 2fo1_E 254 -----------------------------------AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 298 (373)
T ss_dssp -----------------------------------HHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHH
T ss_pred -----------------------------------HHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHH
Confidence 2222211111110 0012566899999999999999999999
Q ss_pred HHccC-CCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhcCCCC
Q 006942 331 IMAYD-SSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVPSS 395 (624)
Q Consensus 331 l~~~~-~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~ 395 (624)
++. + .++...|..|+||||+|+.+|+.+++++|++.+ ..+|.+|..|+||||+|+..|+.+
T Consensus 299 l~~-~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g---ad~~~~d~~g~t~l~~A~~~g~~~ 360 (373)
T 2fo1_E 299 VGE-KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG---ASVEAVDATDHTARQLAQANNHHN 360 (373)
T ss_dssp HHH-SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT---CCSSCCCSSSCCHHHHHHHTTCHH
T ss_pred HHh-cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCccCCCCCCCCHHHHHHHcCCHH
Confidence 998 7 455444999999999999999999999999998 667799999999999999999853
No 12
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=9.3e-37 Score=306.48 Aligned_cols=254 Identities=15% Similarity=0.026 Sum_probs=178.1
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCch-hhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPE-TLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHG 104 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~-~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~ 104 (624)
|.+| +||||+||. .| +.++|++|++.+... .++.+|..|.||||+||..|+.++|++|++++++ ++.+|.
T Consensus 6 d~~g-~t~L~~A~~----~g---~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~ 76 (282)
T 1oy3_D 6 TEDG-DTALHLAVI----HQ---HEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAER 76 (282)
T ss_dssp CTTC-CCHHHHHHH----TT---CHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCT
T ss_pred CCCC-CcHHHHHHH----cC---CHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCC
Confidence 8899 999999999 99 999999999987332 3889999999999999999999999999999998 788999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCccc------------cCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCC
Q 006942 105 EGFLPVHDAALYGHKDTFHYLLEVTHGVDIY------------SGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSID 172 (624)
Q Consensus 105 ~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~------------~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~ 172 (624)
.|.||||+|+..|+.+++++|++.++..... ....+.++++.+...+.......++.......+.+|.
T Consensus 77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 1oy3_D 77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156 (282)
T ss_dssp TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCT
T ss_pred CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCC
Confidence 9999999999999999999999988663321 3345667777777666555444444433444567788
Q ss_pred CCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhh
Q 006942 173 SRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITT 252 (624)
Q Consensus 173 ~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (624)
.|.||||+|+..++
T Consensus 157 ~g~t~L~~A~~~g~------------------------------------------------------------------ 170 (282)
T 1oy3_D 157 DGHTPLHVAVIHKD------------------------------------------------------------------ 170 (282)
T ss_dssp TSCCHHHHHHHTTC------------------------------------------------------------------
T ss_pred CCcCHHHHHHHcCC------------------------------------------------------------------
Confidence 99999999997742
Q ss_pred hhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHH
Q 006942 253 TFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIM 332 (624)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~ 332 (624)
...+++|. +.......+.+..|.||||+|+..|+.++|++|++
T Consensus 171 ----------------------------------~~~v~~Ll---~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 213 (282)
T 1oy3_D 171 ----------------------------------AEMVRLLR---DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213 (282)
T ss_dssp ----------------------------------HHHHHHHH---HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHH---HcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 11233332 22221123233459999999999999999999999
Q ss_pred ccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhcCCCC
Q 006942 333 AYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVPSS 395 (624)
Q Consensus 333 ~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~ 395 (624)
+ ++++...|..|+||||+|+.+++.+++++|+++| ..++.+|.+|.|||++|....+.+
T Consensus 214 ~-gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~a~~~~~~~ 272 (282)
T 1oy3_D 214 A-GADPTARMYGGRTPLGSALLRPNPILARLLRAHG---APEPEDGGDKLSPCSSSGSDSDSD 272 (282)
T ss_dssp T-TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT---CCCCCCC-----------------
T ss_pred c-CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC---CCcCcCCCcccccccccCCccccc
Confidence 9 9998877999999999999999999999999999 667799999999999999876543
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.7e-36 Score=298.43 Aligned_cols=241 Identities=14% Similarity=0.113 Sum_probs=197.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh
Q 006942 71 HGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAA 150 (624)
Q Consensus 71 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~ 150 (624)
+|.||||+||..|+.++++.|++++++ ++.+|.+|.||||+|+..|+.+++++|++.+++.+. .+.+|.||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHc
Confidence 589999999999999999999999888 889999999999999999999999999999999888 899999999999999
Q ss_pred CcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhh
Q 006942 151 NLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESF 230 (624)
Q Consensus 151 ~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (624)
|+.++++.|++.+.+.. .+.+|.||||+|+..++
T Consensus 80 ~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~-------------------------------------------- 113 (261)
T 2xai_A 80 GSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGH-------------------------------------------- 113 (261)
T ss_dssp TCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTC--------------------------------------------
T ss_pred CCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCc--------------------------------------------
Confidence 99999999999988764 35669999999998742
Q ss_pred hhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCcc
Q 006942 231 IVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQ 310 (624)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~ 310 (624)
...+++ +.+.....+ ..+..
T Consensus 114 --------------------------------------------------------~~~v~~---Ll~~g~~~~-~~~~~ 133 (261)
T 2xai_A 114 --------------------------------------------------------VECVNS---LIAYGGNID-HKISH 133 (261)
T ss_dssp --------------------------------------------------------HHHHHH---HHHTTCCTT-CCBTT
T ss_pred --------------------------------------------------------HHHHHH---HHHcCCCCC-cCCCC
Confidence 112222 222222112 26778
Q ss_pred ccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhh
Q 006942 311 LSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGR 390 (624)
Q Consensus 311 g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~ 390 (624)
|.||||+|+..|+.++++.|++. ++++. .|..|+||||+|+..++.+++++|++.+ .+++.+|.+|+||||+|+.
T Consensus 134 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~tpl~~A~~ 208 (261)
T 2xai_A 134 LGTPLYLACENQQRACVKKLLES-GADVN-QGKGQDSPLHAVARTASEELACLLMDFG---ADTQAKNAEGKRPVELVPP 208 (261)
T ss_dssp TBCHHHHHHHTTCHHHHHHHHHH-TCCTT-CCBTTBCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCGGGGSCT
T ss_pred CCCHHHHHHHhCCHHHHHHHHHc-CCCCC-CCCCCCChHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCChhhhccc
Confidence 89999999999999999999999 98877 4889999999999999999999999998 5677999999999999996
Q ss_pred cCCCCCccchHHHhHHHHhHHHHHHhhcCc-----ccccccCCCCCChhhhhhH
Q 006942 391 LVPSSEVAGAALQMQRELQWFKAIENLVHP-----FFREATNDLKQTPREVFTE 439 (624)
Q Consensus 391 ~~~~~~~~gaalq~~~~l~~~~~v~~~~~~-----~~~~~~N~~G~Tp~dl~~~ 439 (624)
.++.. +.+ ++...++ .....+|..|+||++.+.+
T Consensus 209 ~~~~~----------~~l-----l~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~ 247 (261)
T 2xai_A 209 ESPLA----------QLF-----LEREGPPSLMQLCRLRIRKCFGIQQHHKITK 247 (261)
T ss_dssp TCTHH----------HHH-----HHC-CCCCHHHHHHHHHHTTSCTTCGGGGGG
T ss_pred cccHH----------HHH-----HhccCCccHHHHHHHHHHHHhchhccccCcc
Confidence 65411 111 1111111 1356789999999998765
No 14
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.5e-37 Score=311.91 Aligned_cols=263 Identities=17% Similarity=0.198 Sum_probs=214.2
Q ss_pred ccCCCHHHHHHHHHcCccc-------cccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCCh
Q 006942 2 IEKNDWQGVEDFVTNHPDA-------LTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHT 74 (624)
Q Consensus 2 a~~G~~~~v~~ll~~~~~~-------~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~T 74 (624)
+.+|..+.++.++...... ....++.+| .||||.||. .| +.++|+.|++.+ .+++..|.+|.|
T Consensus 6 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~l~~A~~----~g---~~~~v~~Ll~~g--~~~~~~~~~g~t 75 (299)
T 1s70_B 6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDD-GAVFLAACS----SG---DTEEVLRLLERG--ADINYANVDGLT 75 (299)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECH-HHHHHHHHH----HT---CHHHHHHHHHHC--CCTTCBCTTCCB
T ss_pred HHHHHHHHHHHHHccccccccccccCcccccccCC-ccHHHHHHH----cC---CHHHHHHHHHcC--CCCcccCCCCCC
Confidence 5567788888888874431 112234567 899999999 99 999999999997 678999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHH
Q 006942 75 AATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYD 154 (624)
Q Consensus 75 pLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~ 154 (624)
|||+||..|+.++|++|++++++ ++.+|..|.||||+|+..|+.+++++|++++++.+. .+.+|.||||+|+..++.+
T Consensus 76 ~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~ 153 (299)
T 1s70_B 76 ALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEE 153 (299)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCSHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHhcchHH
Confidence 99999999999999999999988 788999999999999999999999999999999888 8999999999999999999
Q ss_pred HHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhh
Q 006942 155 VALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTS 234 (624)
Q Consensus 155 ~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (624)
+++.++...+......+..+.++++.
T Consensus 154 ~~~~ll~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 179 (299)
T 1s70_B 154 LLQNEVNRQGVDIEAARKEEERIMLR------------------------------------------------------ 179 (299)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred HHHHHHhhcCCCchhhhhhhhhHHHH------------------------------------------------------
Confidence 99998876442211111111111111
Q ss_pred cccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHH
Q 006942 235 KIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVA 314 (624)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tp 314 (624)
.+..+...........+..|.||
T Consensus 180 ---------------------------------------------------------~~~~~l~~~~~~~~~~~~~g~t~ 202 (299)
T 1s70_B 180 ---------------------------------------------------------DARQWLNSGHINDVRHAKSGGTA 202 (299)
T ss_dssp ---------------------------------------------------------HHHHHHHHTCCCCCCCTTTCCCH
T ss_pred ---------------------------------------------------------HHHHHHhccCcchhhhcCCCCCH
Confidence 11111111111123356788999
Q ss_pred HHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhc
Q 006942 315 MLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRL 391 (624)
Q Consensus 315 Lh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~ 391 (624)
||+|+..|+.++++.|++. ++++...|..|+||||+|+.+|+.+++++|++.+ ..++.+|..|+||||+|++.
T Consensus 203 L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 203 LHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL---CDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp HHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCTTTSCCSG
T ss_pred HHHHHHCCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHH
Confidence 9999999999999999999 9888777999999999999999999999999998 56779999999999999754
No 15
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=302.56 Aligned_cols=245 Identities=13% Similarity=0.084 Sum_probs=196.1
Q ss_pred CccCCCHHHHHHHHHcCcc----------ccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCC
Q 006942 1 MIEKNDWQGVEDFVTNHPD----------ALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDN 70 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~----------~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~ 70 (624)
|+.+|+.+.+.+++...+. .++.+ +.+| +||||+||. .| +.++|+.|++.+ .+++.+|.
T Consensus 22 Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g-~t~L~~Aa~----~g---~~~~v~~Ll~~g--~~~~~~~~ 90 (285)
T 3d9h_A 22 ASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSD-WSPMHEAAI----HG---HQLSLRNLISQG--WAVNIITA 90 (285)
T ss_dssp --------------------CCSEECCCCTTCSS-SCCS-CCHHHHHHH----TT---CHHHHHHHHHTT--CCSCEECT
T ss_pred HhhcCCCCCcccCCCCccccccchhhhhCcccCC-CccC-CCHHHHHHH----cC---CHHHHHHHHHCC--CCCCCcCC
Confidence 6889999888887665322 23444 8889 999999999 99 999999999997 67899999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh
Q 006942 71 HGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAA 150 (624)
Q Consensus 71 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~ 150 (624)
+|.||||+||..|+.++|++|++++++ ++.+|..|.||||+|+..|+.+++++|++.+++.+. +.+|.||||+|+..
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~ 167 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARR 167 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHc
Confidence 999999999999999999999999888 788999999999999999999999999999988764 55699999999999
Q ss_pred CcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhh
Q 006942 151 NLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESF 230 (624)
Q Consensus 151 ~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (624)
|+.++++.|++.+.++ +.+|.+|.||||+|+..++
T Consensus 168 g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~-------------------------------------------- 202 (285)
T 3d9h_A 168 GHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQ-------------------------------------------- 202 (285)
T ss_dssp TCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTC--------------------------------------------
T ss_pred CCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCc--------------------------------------------
Confidence 9999999999998765 6789999999999997742
Q ss_pred hhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCcc
Q 006942 231 IVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQ 310 (624)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~ 310 (624)
...+++| .+... ....+..
T Consensus 203 --------------------------------------------------------~~~v~~L---l~~ga--~~~~~~~ 221 (285)
T 3d9h_A 203 --------------------------------------------------------RACVKKL---LESGA--DVNQGKG 221 (285)
T ss_dssp --------------------------------------------------------HHHHHHH---HHTTC--CTTCCBT
T ss_pred --------------------------------------------------------HHHHHHH---HHCCC--CCCCCCC
Confidence 1123333 33322 1224778
Q ss_pred ccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCC
Q 006942 311 LSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVN 368 (624)
Q Consensus 311 g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 368 (624)
|.||||+|+..|+.+++++|+++ +.+....|.+|+||||+|+ ++.+++++|++..
T Consensus 222 g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~ 276 (285)
T 3d9h_A 222 QDSPLHAVVRTASEELACLLMDF-GADTQAKNAEGKRPVELVP--PESPLAQLFLERE 276 (285)
T ss_dssp TBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence 89999999999999999999999 9988877999999999999 4569999999874
No 16
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.5e-35 Score=306.35 Aligned_cols=274 Identities=15% Similarity=0.077 Sum_probs=224.8
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCC-CCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDN-HGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHG 104 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~-~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~ 104 (624)
+.+| +||||.||+ .| +.++|++||++| ++++.++. .|.||||+||..|+.++|++|++++++ ++.++.
T Consensus 22 ~~~~-~t~L~~Av~----~g---~~~~V~~LL~~G--advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~ 90 (337)
T 4g8k_A 22 AVED-NHLLIKAVQ----NE---DVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKK 90 (337)
T ss_dssp HHHH-HHHHHHHHH----TT---CHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred CCCC-ChHHHHHHH----cC---CHHHHHHHHHCC--CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhcc
Confidence 4457 999999999 99 999999999998 77888775 499999999999999999999999998 788999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCc---------ccCCCCC
Q 006942 105 EGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGR---------DSIDSRR 175 (624)
Q Consensus 105 ~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~---------~~d~~G~ 175 (624)
.+.+|++.++..++.+++..+++.+.+.+. .+..|.||||+|+..|+.++++.+++.+.++.. ..+..|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~ 169 (337)
T 4g8k_A 91 NGATPFILAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 169 (337)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSC
T ss_pred CCCchhHHHHhcccchhhHHhhhccchhhh-hccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCC
Confidence 999999999999999999999999999888 899999999999999999999999998765432 3456799
Q ss_pred CHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhh
Q 006942 176 IILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFG 255 (624)
Q Consensus 176 TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (624)
||||+|++.++
T Consensus 170 T~L~~A~~~g~--------------------------------------------------------------------- 180 (337)
T 4g8k_A 170 TALMDAAEKGH--------------------------------------------------------------------- 180 (337)
T ss_dssp CHHHHHHHHTC---------------------------------------------------------------------
T ss_pred cHHHHHHHCCC---------------------------------------------------------------------
Confidence 99999997642
Q ss_pred hhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhh-cccccccCCccccHHHHHHHHcCC----HHHHHHH
Q 006942 256 AMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEG-VVWTNFQNSAQLSVAMLAAAILGI----PEVVNEF 330 (624)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~-~~~~~~~~~~~g~tpLh~Aa~~g~----~~iv~~L 330 (624)
...+++| .+. ... ....+..|.||+|.++..++ .++++.|
T Consensus 181 -------------------------------~~~v~~L---L~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lL 225 (337)
T 4g8k_A 181 -------------------------------VEVLKIL---LDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLL 225 (337)
T ss_dssp -------------------------------HHHHHHH---HHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHH
T ss_pred -------------------------------HHHHHHH---HhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHH
Confidence 1123322 221 111 11267788999998886554 4688999
Q ss_pred HHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhcCCCCCccchHHHhHHHHhH
Q 006942 331 IMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVPSSEVAGAALQMQRELQW 410 (624)
Q Consensus 331 l~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~gaalq~~~~l~~ 410 (624)
+++ +.++...|..|+||||+|+..++.+++++|++... ..+|.+|.+|+||||+|++.|+.+
T Consensus 226 l~~-gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~--~~vn~~d~~G~TpL~~A~~~g~~~--------------- 287 (337)
T 4g8k_A 226 LDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH--IEINDTDSDGKTALLLAVELKLKK--------------- 287 (337)
T ss_dssp HHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT--CCTTCBCTTSCBHHHHHHHTTCHH---------------
T ss_pred HHC-CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC--CcccCcCCCCCCHHHHHHHcCCHH---------------
Confidence 999 99988779999999999999999999999998643 457899999999999999999853
Q ss_pred HHHHHhhcCcccccccCCCCCChhhhhhH
Q 006942 411 FKAIENLVHPFFREATNDLKQTPREVFTE 439 (624)
Q Consensus 411 ~~~v~~~~~~~~~~~~N~~G~Tp~dl~~~ 439 (624)
.|+.++.. --|.+++||+..+.+
T Consensus 288 --iv~~Ll~~----GAd~n~~~~L~~A~~ 310 (337)
T 4g8k_A 288 --IAELLCKR----GASTDCGDLVMTARR 310 (337)
T ss_dssp --HHHHHHTT----SCSSTTCCHHHHHHH
T ss_pred --HHHHHHHC----CCCCCCCCHHHHHHH
Confidence 23433332 124567889988754
No 17
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.6e-36 Score=292.25 Aligned_cols=218 Identities=15% Similarity=0.087 Sum_probs=192.3
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHcc--CchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKV--DPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRH 103 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~--~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n 103 (624)
|.+| +||||+||. .| +.++|+.|++.. ...+++.+|..|.||||+|+..|+.+++++|++++++ ++.+|
T Consensus 6 d~~g-~t~L~~A~~----~g---~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~ 76 (241)
T 1k1a_A 6 DEDG-DTPLHIAVV----QG---NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALD 76 (241)
T ss_dssp -CTT-CCHHHHHHH----TT---CHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred CCCC-CcHHHHHHH----cC---CHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccC
Confidence 8899 999999999 99 999999999831 1367889999999999999999999999999999888 77889
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhcC----CCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHH
Q 006942 104 GEGFLPVHDAALYGHKDTFHYLLEVTH----GVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILN 179 (624)
Q Consensus 104 ~~G~TPLh~Aa~~g~~~iv~~Ll~~~~----~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh 179 (624)
..|.||||+|+..|+.+++++|++.++ +.+. .+..|.||||+|+..|+.++++.|++.+.+....
T Consensus 77 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~---------- 145 (241)
T 1k1a_A 77 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA-RNYDGLTALHVAVNTECQETVQLLLERGADIDAV---------- 145 (241)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccc-cCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc----------
Confidence 999999999999999999999999987 5555 7899999999999999999999999876543111
Q ss_pred HHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhH
Q 006942 180 TLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLH 259 (624)
Q Consensus 180 ~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (624)
T Consensus 146 -------------------------------------------------------------------------------- 145 (241)
T 1k1a_A 146 -------------------------------------------------------------------------------- 145 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCce
Q 006942 260 KLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSN 339 (624)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~ 339 (624)
.+..|.||||+|+..|+.++++.|+++ ++++.
T Consensus 146 -----------------------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~ 177 (241)
T 1k1a_A 146 -----------------------------------------------DIKSGRSPLIHAVENNSLSMVQLLLQH-GANVN 177 (241)
T ss_dssp -----------------------------------------------CTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTT
T ss_pred -----------------------------------------------cccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence 224567888888888999999999999 99888
Q ss_pred ecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhcCCC
Q 006942 340 WSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVPS 394 (624)
Q Consensus 340 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~~~ 394 (624)
..|..|+||||+|+.+++.+++++|++.+ ..++.+|.+|+||||+|++.|+.
T Consensus 178 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~A~~~~~~ 229 (241)
T 1k1a_A 178 AQMYSGSSALHSASGRGLLPLVRTLVRSG---ADSSLKNCHNDTPLMVARSRRVI 229 (241)
T ss_dssp CBCTTSCBHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCTTTTCSSHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHhcC---CCCCCcCCCCCCHHHHHHhcCcH
Confidence 77999999999999999999999999998 55779999999999999988764
No 18
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.9e-36 Score=298.50 Aligned_cols=223 Identities=16% Similarity=0.086 Sum_probs=162.1
Q ss_pred hhccCCCCCChHHHHHHHcC-------------CHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcC
Q 006942 64 TLARQDNHGHTAATLSAAKG-------------NLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTH 130 (624)
Q Consensus 64 ~~~~~d~~G~TpLh~Aa~~g-------------~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~ 130 (624)
++|.+|.+|.||||+|+..| +.++++.|++.+++.....|..|.||||+|+..|+.+++++|++.++
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 56889999999999999987 89999999999999777789999999999999999999999999999
Q ss_pred CCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhcccccccc
Q 006942 131 GVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKE 210 (624)
Q Consensus 131 ~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~ 210 (624)
+.+. ++..|.||||+|+..|+.++++.|++.++......|..|.||||+|+..++. .
T Consensus 82 ~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~-------~--------------- 138 (253)
T 1yyh_A 82 DANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE-------G--------------- 138 (253)
T ss_dssp CTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCS-------S---------------
T ss_pred CCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChH-------H---------------
Confidence 9888 8999999999999999999999999998866788899999999999976421 1
Q ss_pred ccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHH
Q 006942 211 LVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTV 290 (624)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 290 (624)
.+
T Consensus 139 ------------------------------------------------------------------------------~v 140 (253)
T 1yyh_A 139 ------------------------------------------------------------------------------ML 140 (253)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------HH
Confidence 22
Q ss_pred HHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCcc
Q 006942 291 EIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFT 370 (624)
Q Consensus 291 ~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~ 370 (624)
++|.....+. + ..+..|.||||+|+..|+.+++++|+++ +++....|..|+||||+|+.+|+.+++++|++.+
T Consensus 141 ~~Ll~~g~~~---~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-- 213 (253)
T 1yyh_A 141 EDLINSHADV---N-AVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHF-- 213 (253)
T ss_dssp HHHHHTTCCT---T-CBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--
T ss_pred HHHHHcCCCC---C-CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC--
Confidence 2222211111 2 2677899999999999999999999999 9998777999999999999999999999999998
Q ss_pred ccccccccCCCCchhhhhhhcCCCC
Q 006942 371 TFLFSSRDKAGNNILHLAGRLVPSS 395 (624)
Q Consensus 371 ~~~vn~~D~~GnTpLHlAa~~~~~~ 395 (624)
..++.+|..|+||||+|++.|+.+
T Consensus 214 -a~~~~~d~~g~tpl~~A~~~g~~~ 237 (253)
T 1yyh_A 214 -ANRDITDHMDRLPRDIAQERMHHD 237 (253)
T ss_dssp -CCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred -CCccccccCCCCHHHHHHHcCCHH
Confidence 556799999999999999999854
No 19
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.2e-36 Score=313.86 Aligned_cols=253 Identities=12% Similarity=0.021 Sum_probs=210.5
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGE 105 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~ 105 (624)
|.+| .||||+||. .| +.++|++|++.+ .+++.+|..|.||||+||..|+.++|++|++++++ ..+.+
T Consensus 17 d~~g-~t~L~~Aa~----~g---~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~ 83 (364)
T 3ljn_A 17 DDEN-MEKIHVAAR----KG---QTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV---HSLWH 83 (364)
T ss_dssp CHHH-HHHHHHHHH----HT---CHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC---CCCBT
T ss_pred CCCC-CCHHHHHHH----cC---CHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---ccccC
Confidence 7889 999999999 99 999999999997 77899999999999999999999999999999986 44568
Q ss_pred CChHHHHHHHcCCHHHHHHHHHh----cCCCcc----------------ccCCCCCcHHHHHHHhC--cHHHHHHHHHhC
Q 006942 106 GFLPVHDAALYGHKDTFHYLLEV----THGVDI----------------YSGKDGANVLSFLIAAN--LYDVALDLLKRH 163 (624)
Q Consensus 106 G~TPLh~Aa~~g~~~iv~~Ll~~----~~~~~~----------------~~~~~G~t~Lh~A~~~~--~~~~v~~Ll~~~ 163 (624)
|.||||+|+..|+.+++++|++. +.+.+. ..+.+|.||||+|+..| +.++++.|++.+
T Consensus 84 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g 163 (364)
T 3ljn_A 84 GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG 163 (364)
T ss_dssp TBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence 99999999999999999999998 444332 05678999999999999 999999999997
Q ss_pred CCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCccccc
Q 006942 164 PTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTR 243 (624)
Q Consensus 164 ~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (624)
.++ +.+|..|.||||+|+..++
T Consensus 164 a~~-~~~d~~g~t~L~~A~~~g~--------------------------------------------------------- 185 (364)
T 3ljn_A 164 ASP-TAKDKADETPLMRAMEFRN--------------------------------------------------------- 185 (364)
T ss_dssp CCT-TCCCTTSCCHHHHHHHTTC---------------------------------------------------------
T ss_pred CCC-cccCCCCCCHHHHHHHcCC---------------------------------------------------------
Confidence 765 6789999999999998742
Q ss_pred CCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhc-cc-ccccCCccccHHHHHHHHc
Q 006942 244 FGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGV-VW-TNFQNSAQLSVAMLAAAIL 321 (624)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~-~~-~~~~~~~~g~tpLh~Aa~~ 321 (624)
...+++|.....+. .. .+ ..+..|.||||+|+..
T Consensus 186 -------------------------------------------~~~v~~Ll~~g~~~~~~~~~-~~~~~g~t~L~~A~~~ 221 (364)
T 3ljn_A 186 -------------------------------------------REALDLMMDTVPSKSSLRLD-YANKQGNSHLHWAILI 221 (364)
T ss_dssp -------------------------------------------HHHHHHHHHHCSCSSSCCTT-CCCTTCCCTTHHHHTT
T ss_pred -------------------------------------------HHHHHHHHhccccccccccc-ccCCCCCcHHHHHHHc
Confidence 11233332222110 00 11 2677899999999999
Q ss_pred CCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCC-cc--------ccccccccCCCCchhhhhhhcC
Q 006942 322 GIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVN-FT--------TFLFSSRDKAGNNILHLAGRLV 392 (624)
Q Consensus 322 g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~-~~--------~~~vn~~D~~GnTpLHlAa~~~ 392 (624)
|+.++|++|+++ ++++...|..|+||||+|+.+|+.+++++|++.+ +. .......|..|.|||+.|+..+
T Consensus 222 g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~ 300 (364)
T 3ljn_A 222 NWEDVAMRFVEM-GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300 (364)
T ss_dssp TCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred CCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhcc
Confidence 999999999999 9998766999999999999999999999999987 21 1112236788999999999887
Q ss_pred CC
Q 006942 393 PS 394 (624)
Q Consensus 393 ~~ 394 (624)
+.
T Consensus 301 ~~ 302 (364)
T 3ljn_A 301 SK 302 (364)
T ss_dssp HH
T ss_pred CH
Confidence 63
No 20
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7.6e-35 Score=283.07 Aligned_cols=212 Identities=16% Similarity=0.213 Sum_probs=184.0
Q ss_pred CCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcC--CCCcccCCCCC
Q 006942 29 GSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYN--PDLTNIRHGEG 106 (624)
Q Consensus 29 g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~--~~l~~~~n~~G 106 (624)
| +||||.||. .| +.++|+.|++.+ +...+.+|..|.||||+|+..|+.+++++|++++ ++.....|..|
T Consensus 2 g-~t~L~~A~~----~g---~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g 72 (228)
T 2dzn_A 2 S-NYPLHQACM----EN---EFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72 (228)
T ss_dssp --CCHHHHHHH----TT---CHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTS
T ss_pred C-ccHHHHHHH----hC---CHHHHHHHHhcC-ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCC
Confidence 5 899999999 99 999999999997 4556668999999999999999999999999998 66333388999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhc--CCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcC
Q 006942 107 FLPVHDAALYGHKDTFHYLLEVT--HGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQK 184 (624)
Q Consensus 107 ~TPLh~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~ 184 (624)
.||||+|+..|+.+++++|++.+ .+.+. .+..|.||||+|+..|+.++++.|++.+.++ +.
T Consensus 73 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~--------------- 135 (228)
T 2dzn_A 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RI--------------- 135 (228)
T ss_dssp CCHHHHHHHHCCHHHHHHHHSSSSCCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CC---------------
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCccccc-CCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cc---------------
Confidence 99999999999999999999998 66666 8899999999999999999999999875543 11
Q ss_pred CCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHH
Q 006942 185 PYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRM 264 (624)
Q Consensus 185 ~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (624)
T Consensus 136 -------------------------------------------------------------------------------- 135 (228)
T 2dzn_A 136 -------------------------------------------------------------------------------- 135 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccC-CCceecCC
Q 006942 265 LWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYD-SSSNWSNQ 343 (624)
Q Consensus 265 ~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~-~d~~~~d~ 343 (624)
.+..|.||||+|+..|+.++++.|++. + .+....|.
T Consensus 136 ------------------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~d~ 172 (228)
T 2dzn_A 136 ------------------------------------------KDKFNQIPLHRAASVGSLKLIELLCGL-GKSAVNWQDK 172 (228)
T ss_dssp ------------------------------------------CCTTSCCHHHHHHHTTCHHHHHHHHTT-TCCCSCCCCT
T ss_pred ------------------------------------------cCCCCCCHHHHHHHcCCHHHHHHHHhc-CcccccCcCC
Confidence 344567888888888999999999999 8 44444499
Q ss_pred CCCcHHHHHHHcCChhHHHHHh-cCCccccccccccCCCCchhhhhhhcC
Q 006942 344 DGHTIFDHAVLYRREKVFNLIQ-GVNFTTFLFSSRDKAGNNILHLAGRLV 392 (624)
Q Consensus 344 ~G~T~Lh~A~~~~~~~iv~~Ll-~~~~~~~~vn~~D~~GnTpLHlAa~~~ 392 (624)
.|+||||+|+..++.+++++|+ +.+ ..++.+|.+|+||||+|++.+
T Consensus 173 ~g~t~L~~A~~~~~~~~v~~Ll~~~g---a~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 173 QGWTPLFHALAEGHGDAAVLLVEKYG---AEYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHHC---CCSCCBCTTSCBGGGGCSSTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcC---CCCCccCCCCCcHHHHHHHHH
Confidence 9999999999999999999999 777 557799999999999998653
No 21
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.2e-35 Score=290.93 Aligned_cols=233 Identities=16% Similarity=0.169 Sum_probs=167.6
Q ss_pred cccccCCCCCchHHHHHHhhhhhcCC----------cchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHH
Q 006942 21 LTAKIVEPGSMTIFHMIVELLIDAES----------DEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKL 90 (624)
Q Consensus 21 ~~~~~~~~g~~T~Lh~Aa~~~~~~g~----------~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~ 90 (624)
++.+ |.+| +||||+|+. .|+ ..+.++++.|++.+ ....+..|..|.||||+||..|+.++|++
T Consensus 3 vn~~-d~~g-~tpL~~A~~----~g~~~~~~~~~~~~~~~~~v~~Ll~~g-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~ 75 (253)
T 1yyh_A 3 VNVR-GPDG-FTPLMIASC----SGGGLETGNSEEEEDAPAVISDFIYQG-ASLHNQTDRTGETALHLAARYSRSDAAKR 75 (253)
T ss_dssp --------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCCC-CCCC-CcHHHHHHh----ccccccccchhhcCCChHHHHHHHHcc-CCcccccCCCCCcHHHHHHHcCCHHHHHH
Confidence 4455 8899 999999998 661 12689999999997 23335568999999999999999999999
Q ss_pred HHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcc
Q 006942 91 LVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTH-GVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRD 169 (624)
Q Consensus 91 Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~-~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~ 169 (624)
|++++++ ++.+|..|.||||+|+..|+.+++++|++.++ +.+. .+..|.||||+|+..|+.++++.|++.+.++ +.
T Consensus 76 Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~ 152 (253)
T 1yyh_A 76 LLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-RMHDGTTPLILAARLAVEGMLEDLINSHADV-NA 152 (253)
T ss_dssp HHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTC-CCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TC
T ss_pred HHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CC
Confidence 9999988 78899999999999999999999999999987 5555 8999999999999999999999999988765 67
Q ss_pred cCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcc
Q 006942 170 SIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQ 249 (624)
Q Consensus 170 ~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (624)
+|.+|.||||+|+..++
T Consensus 153 ~d~~g~t~L~~A~~~~~--------------------------------------------------------------- 169 (253)
T 1yyh_A 153 VDDLGKSALHWAAAVNN--------------------------------------------------------------- 169 (253)
T ss_dssp BCTTSCBHHHHHHHHTC---------------------------------------------------------------
T ss_pred cCCCCCCHHHHHHHcCC---------------------------------------------------------------
Confidence 78999999999997642
Q ss_pred hhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHH
Q 006942 250 ITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNE 329 (624)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~ 329 (624)
...+++| .+.....+ ..+..|.||||+|+..|+.++++.
T Consensus 170 -------------------------------------~~~v~~L---l~~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~ 208 (253)
T 1yyh_A 170 -------------------------------------VDAAVVL---LKNGANKD-MQNNREETPLFLAAREGSYETAKV 208 (253)
T ss_dssp -------------------------------------HHHHHHH---HHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred -------------------------------------HHHHHHH---HHcCCCCC-CcCCCCCCHHHHHHHCCCHHHHHH
Confidence 1122322 22222112 267789999999999999999999
Q ss_pred HHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCC
Q 006942 330 FIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVN 368 (624)
Q Consensus 330 Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 368 (624)
|+++ +++....|..|+||||+|+++|+.+++++|....
T Consensus 209 Ll~~-ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 209 LLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred HHHc-CCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 9999 9998767999999999999999999999998765
No 22
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.4e-35 Score=296.13 Aligned_cols=254 Identities=17% Similarity=0.087 Sum_probs=181.7
Q ss_pred hccCCCCCChHHHHHHHcCCHHHHHHHHhcCCC--CcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCc
Q 006942 65 LARQDNHGHTAATLSAAKGNLRALKLLVKYNPD--LTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGAN 142 (624)
Q Consensus 65 ~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~--l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t 142 (624)
++.+|.+|.||||+||..|+.++|++|++.+++ .++.+|..|.||||+||..|+.+++++|++++++.+. ++..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-AERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCC
Confidence 467899999999999999999999999998665 4778999999999999999999999999999999988 8999999
Q ss_pred HHHHHHHhCcHHHHHHHHHhCCCCCccc------------CCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhcccccccc
Q 006942 143 VLSFLIAANLYDVALDLLKRHPTIGRDS------------IDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKE 210 (624)
Q Consensus 143 ~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~------------d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~ 210 (624)
|||+|+..|+.++++.|++.++...... ...+.+|++.++.....
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 137 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE----------------------- 137 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------------------
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccc-----------------------
Confidence 9999999999999999999876532211 11122222222211000
Q ss_pred ccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHH
Q 006942 211 LVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTV 290 (624)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 290 (624)
....
T Consensus 138 ----------------------------------------------------------------------------~~~~ 141 (282)
T 1oy3_D 138 ----------------------------------------------------------------------------NEEE 141 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------hhhh
Confidence 0000
Q ss_pred HHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecC-CCCCcHHHHHHHcCChhHHHHHhcCCc
Q 006942 291 EIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSN-QDGHTIFDHAVLYRREKVFNLIQGVNF 369 (624)
Q Consensus 291 ~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~~~~ 369 (624)
..+...... ....+..|.||||+|+..|+.+++++|+++ ++++...+ ..|+||||+|+.+|+.+++++|++.+
T Consensus 142 ~~~~~~~~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g- 215 (282)
T 1oy3_D 142 PRDEDWRLQ----LEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG- 215 (282)
T ss_dssp --CCCGGGG----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred hhhhhhhhc----CCCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-
Confidence 000000000 112677899999999999999999999999 99998884 56999999999999999999999998
Q ss_pred cccccccccCCCCchhhhhhhcCCCCCccchHHHhHHHHhHHHHHHhhcC-cccccccCCCCCChhhhhhHHHHH
Q 006942 370 TTFLFSSRDKAGNNILHLAGRLVPSSEVAGAALQMQRELQWFKAIENLVH-PFFREATNDLKQTPREVFTEEHKE 443 (624)
Q Consensus 370 ~~~~vn~~D~~GnTpLHlAa~~~~~~~~~gaalq~~~~l~~~~~v~~~~~-~~~~~~~N~~G~Tp~dl~~~~~~~ 443 (624)
..+|.+|.+|+||||+|++.++.+ .++.++. ....+.+|.+|+||++.+.....+
T Consensus 216 --ad~~~~d~~g~tpL~~A~~~~~~~-----------------~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 216 --ADPTARMYGGRTPLGSALLRPNPI-----------------LARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp --CCTTCCCTTSCCHHHHHHTSSCHH-----------------HHHHHHHTTCCCCCCC----------------
T ss_pred --CCCcccccCCCCHHHHHHHcCCcH-----------------HHHHHHHcCCCcCcCCCcccccccccCCcccc
Confidence 667799999999999999999843 1222222 235889999999999998765543
No 23
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.6e-34 Score=281.43 Aligned_cols=214 Identities=18% Similarity=0.176 Sum_probs=189.3
Q ss_pred CCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCC
Q 006942 27 EPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEG 106 (624)
Q Consensus 27 ~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G 106 (624)
..+ +||||.||. .| +.+.++.|++.+ +..++.+|.+|.||||+|+..|+.+++++|++++++ ++.+|..|
T Consensus 4 ~~~-~~~l~~A~~----~g---~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g 73 (231)
T 3aji_A 4 CVS-NIMICNLAY----SG---KLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAG 73 (231)
T ss_dssp CCS-SSHHHHHHH----HT---CHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTS
T ss_pred ccc-cchHHHHHH----hC---CHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCC
Confidence 456 899999999 99 999999999986 566888999999999999999999999999999887 78899999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCC
Q 006942 107 FLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPY 186 (624)
Q Consensus 107 ~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~ 186 (624)
.||||+|+..|+.+++++|++++.+.+. ++..|.||||+|+..++.++++.|++.+.+. +.
T Consensus 74 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~----------------- 134 (231)
T 3aji_A 74 WSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DA----------------- 134 (231)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TC-----------------
T ss_pred CCHHHHHHHcCHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CC-----------------
Confidence 9999999999999999999999999888 8999999999999999999999999875432 11
Q ss_pred CCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhh
Q 006942 187 AFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLW 266 (624)
Q Consensus 187 ~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (624)
T Consensus 135 -------------------------------------------------------------------------------- 134 (231)
T 3aji_A 135 -------------------------------------------------------------------------------- 134 (231)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCC
Q 006942 267 NAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGH 346 (624)
Q Consensus 267 ~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~ 346 (624)
.+..|.||||+|+..|+.++++.|++. +.+....|..|+
T Consensus 135 ----------------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~ 173 (231)
T 3aji_A 135 ----------------------------------------KDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGN 173 (231)
T ss_dssp ----------------------------------------CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSC
T ss_pred ----------------------------------------cCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCC
Confidence 344567888888888889999999998 888776688999
Q ss_pred cHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhcCC
Q 006942 347 TIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVP 393 (624)
Q Consensus 347 T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~~ 393 (624)
||||+|+.+++.+++++|++.+ ..++.+|.+|+||||+|++.++
T Consensus 174 t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~~~~ 217 (231)
T 3aji_A 174 TPLHLACDEERVEEAKFLVTQG---ASIYIENKEEKTPLQVAKGGLG 217 (231)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT---CCSCCCCTTSCCHHHHSCHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHhhHH
Confidence 9999999999999999999888 5567899999999999987665
No 24
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=291.62 Aligned_cols=216 Identities=18% Similarity=0.133 Sum_probs=164.6
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCch------hhccCCCCCChHHHHHHHcCCHH-HHHHHHhcCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPE------TLARQDNHGHTAATLSAAKGNLR-ALKLLVKYNPDL 98 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~------~~~~~d~~G~TpLh~Aa~~g~~~-iv~~Ll~~~~~l 98 (624)
|..+ .||||.||+ .| +.++|++|++.+... .++..|..|.||||.|+..++.+ +++.|++.+.+
T Consensus 8 d~~~-~~~L~~A~~----~G---~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad- 78 (269)
T 4b93_B 8 DYRE-VEKLLRAVA----DG---DLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG- 78 (269)
T ss_dssp CCHH-HHHHHHHHH----TT---CHHHHHHHHTCC----------------------------------------CCCC-
T ss_pred Cccc-hhHHHHHHH----cC---CHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-
Confidence 6667 899999999 99 999999999987432 25678889999999999888765 88999999988
Q ss_pred cccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHH
Q 006942 99 TNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIIL 178 (624)
Q Consensus 99 ~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpL 178 (624)
++.+|.+|.||||+||..|+.+++++|++.+++... ++.+|.||+|.|+..++.++++.|++.+.++ +.
T Consensus 79 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~--------- 147 (269)
T 4b93_B 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGA-RNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NK--------- 147 (269)
T ss_dssp TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CC---------
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCc-cCCCCCCccccccccChHHHHHHHHHCCCCC-CC---------
Confidence 889999999999999999999999999999999888 8999999999999999999999999876543 22
Q ss_pred HHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhh
Q 006942 179 NTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAML 258 (624)
Q Consensus 179 h~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (624)
T Consensus 148 -------------------------------------------------------------------------------- 147 (269)
T 4b93_B 148 -------------------------------------------------------------------------------- 147 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCc
Q 006942 259 HKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSS 338 (624)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~ 338 (624)
.+..|.||||+||..|+.++|++|+++ ++++
T Consensus 148 ------------------------------------------------~d~~g~TpL~~A~~~g~~~~v~~Ll~~-gadv 178 (269)
T 4b93_B 148 ------------------------------------------------KDLSGNTPLIYACSGGHHELVALLLQH-GASI 178 (269)
T ss_dssp ------------------------------------------------CCTTCCCHHHHHHHTTCGGGHHHHHHT-TCCT
T ss_pred ------------------------------------------------CCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCC
Confidence 344567777777788888999999999 9998
Q ss_pred eecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhcCC
Q 006942 339 NWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVP 393 (624)
Q Consensus 339 ~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~~ 393 (624)
+..|..|+||||+|+.+|+.+++++|++.| .++|.+|.+|+||||+|++.++
T Consensus 179 n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G---ad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 179 NASNNKGNTALHEAVIEKHVFVVELLLLHG---ASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp TCBCTTSCBHHHHHHHTTCHHHHHHHHHTT---CCSCCCCTTSCCSGGGSCTTCH
T ss_pred CccccCCCcHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHhCCc
Confidence 877999999999999999999999999998 6677999999999999987653
No 25
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.1e-35 Score=307.28 Aligned_cols=231 Identities=17% Similarity=0.143 Sum_probs=197.1
Q ss_pred cccccC-CCCCchHHHHHHhhhhhcCCcchHHHHHHHH--------HccCchhhccCCCCCChHHHHHHHcCCHHHHHHH
Q 006942 21 LTAKIV-EPGSMTIFHMIVELLIDAESDEAICLLDKLA--------SKVDPETLARQDNHGHTAATLSAAKGNLRALKLL 91 (624)
Q Consensus 21 ~~~~~~-~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll--------~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~L 91 (624)
++.+ + ..| +||||+||. .| +.++|+.|+ +.+ .+++.+|.+|.||||+|+..|+.++|++|
T Consensus 117 ~n~~-d~~~g-~t~Lh~Aa~----~g---~~~~v~~Ll~~~~~~ll~~g--a~vn~~d~~g~TpL~~A~~~g~~~iv~~L 185 (373)
T 2fo1_E 117 VNII-DPRHN-RTVLHWIAS----NS---SAEKSEDLIVHEAKECIAAG--ADVNAMDCDENTPLMLAVLARRRRLVAYL 185 (373)
T ss_dssp TTTC-CCSSC-CCHHHHHHC----TT---CCSCCTTHHHHHHHHHHHTC--CCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred cccc-CCcCC-CCHHHHHHH----CC---CHHHHHHHHHHHHHHHHhcC--CCCcCCCCCCCCHHHHHHHcChHHHHHHH
Confidence 3444 4 688 999999999 99 998888877 555 77899999999999999999999999999
Q ss_pred HhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhc---CCCccccCCCCCcHHHHHHHhC---cHHHHHHHHHhCCC
Q 006942 92 VKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVT---HGVDIYSGKDGANVLSFLIAAN---LYDVALDLLKRHPT 165 (624)
Q Consensus 92 l~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~---~~~~~~~~~~G~t~Lh~A~~~~---~~~~v~~Ll~~~~~ 165 (624)
++++++ ++.+|..|.||||+|+..|+.+++++|++.+ .+.+. .+.+|.||||+|+..+ +.++++.|++.+.+
T Consensus 186 l~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~ 263 (373)
T 2fo1_E 186 MKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE-LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 263 (373)
T ss_dssp HHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC-CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC
T ss_pred HHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhh-cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC
Confidence 999998 7889999999999999999999999999987 56666 8999999999999998 89999999999887
Q ss_pred CCc-------ccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccC
Q 006942 166 IGR-------DSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHS 238 (624)
Q Consensus 166 l~~-------~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (624)
+.. ..|..|.||||+|+..++
T Consensus 264 ~~~~~~~~~~~~d~~g~t~Lh~A~~~g~---------------------------------------------------- 291 (373)
T 2fo1_E 264 VDYDGAARKDSEKYKGRTALHYAAQVSN---------------------------------------------------- 291 (373)
T ss_dssp SSCCSGGGTSSSSCCCCCTHHHHHSSCC----------------------------------------------------
T ss_pred cccccccccCcccccCCCHHHHHHHhCC----------------------------------------------------
Confidence 643 357789999999998742
Q ss_pred cccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHH
Q 006942 239 KESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAA 318 (624)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~A 318 (624)
...+++ +.+.........+..|.||||+|
T Consensus 292 ------------------------------------------------~~~v~~---Ll~~~~~~~n~~d~~g~TpL~~A 320 (373)
T 2fo1_E 292 ------------------------------------------------MPIVKY---LVGEKGSNKDKQDEDGKTPIMLA 320 (373)
T ss_dssp ------------------------------------------------HHHHHH---HHHHSCCCTTCCCTTCCCHHHHH
T ss_pred ------------------------------------------------HHHHHH---HHHhcCCCccCcCCCCCCHHHHH
Confidence 112222 22221000113678899999999
Q ss_pred HHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCC
Q 006942 319 AILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVN 368 (624)
Q Consensus 319 a~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 368 (624)
+..|+.++|++|+++ ++++...|..|+||||+|+.+|+.+++++|++++
T Consensus 321 ~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 321 AQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp HHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 999999999999999 9998877999999999999999999999999887
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5e-34 Score=277.95 Aligned_cols=216 Identities=15% Similarity=0.087 Sum_probs=196.4
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSA 80 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa 80 (624)
|+..|+.+.++.+++.++..++.+ +.+| .||||+|+. .| +.++|++|++.+ .+++.+|..|.||||+|+
T Consensus 13 A~~~g~~~~v~~ll~~~~~~~~~~-~~~g-~t~L~~A~~----~g---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 13 LAYSGKLDELKERILADKSLATRT-DQDS-RTALHWACS----AG---HTEIVEFLLQLG--VPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp HHHHTCHHHHHHHHHHCGGGGGCC-CTTS-CCHHHHHHH----HT---CHHHHHHHHHTT--CCSCCCCTTSCCHHHHHH
T ss_pred HHHhCCHHHHHHHHHhchhhhhcC-CCCC-CCHHHHHHH----cC---cHHHHHHHHHhC--CCCCCcCCCCCCHHHHHH
Confidence 578999999999999998877666 8999 999999999 99 999999999997 678899999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHH
Q 006942 81 AKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLL 160 (624)
Q Consensus 81 ~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll 160 (624)
..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++.+.+.+. .+..|.||||+|+..|+.++++.|+
T Consensus 82 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 99999999999999988 788999999999999999999999999999999888 8999999999999999999999999
Q ss_pred HhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcc
Q 006942 161 KRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKE 240 (624)
Q Consensus 161 ~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (624)
+.+.++ +.
T Consensus 160 ~~g~~~-~~----------------------------------------------------------------------- 167 (231)
T 3aji_A 160 FYKAST-NI----------------------------------------------------------------------- 167 (231)
T ss_dssp HTTCCS-CC-----------------------------------------------------------------------
T ss_pred hcCCCc-cc-----------------------------------------------------------------------
Confidence 875543 11
Q ss_pred cccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHH
Q 006942 241 STRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAI 320 (624)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~ 320 (624)
.+..|.||||+|+.
T Consensus 168 ------------------------------------------------------------------~~~~g~t~L~~A~~ 181 (231)
T 3aji_A 168 ------------------------------------------------------------------QDTEGNTPLHLACD 181 (231)
T ss_dssp ------------------------------------------------------------------CCTTSCCHHHHHHH
T ss_pred ------------------------------------------------------------------cCCCCCCHHHHHHH
Confidence 34456788888888
Q ss_pred cCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCC
Q 006942 321 LGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVN 368 (624)
Q Consensus 321 ~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 368 (624)
.|+.+++++|+++ ++++...|..|+||||+|+..++.+++++|.+.+
T Consensus 182 ~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~ 228 (231)
T 3aji_A 182 EERVEEAKFLVTQ-GASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE 228 (231)
T ss_dssp TTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence 8899999999999 9988766999999999999999999999998765
No 27
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.2e-33 Score=284.71 Aligned_cols=227 Identities=12% Similarity=0.043 Sum_probs=194.5
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSA 80 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa 80 (624)
++..++.+.++++|.+. .++.+ |.+| .||||+||. .| +.++|+.|++.+ .+++.+ +|.||||+|+
T Consensus 6 ~i~~~~~~~v~~lL~~~--~~~~~-d~~g-~t~L~~A~~----~g---~~~~v~~Ll~~g--~~~~~~--~g~t~L~~A~ 70 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSK--DTFKA-DVHG-HSASYYAIA----DN---NVRLVCTLLNAG--ALKNLL--ENEFPLHQAA 70 (285)
T ss_dssp TGGGCCHHHHHHHHHST--TTTCC-CTTS-CCHHHHHHH----TT---CHHHHHHHHHTT--GGGSCC--TTCCHHHHHT
T ss_pred HHHhcCHHHHHHHHHhC--CCCcc-CCCC-CCHHHHHHH----cC---CHHHHHHHHhCC--CCCCCC--CCCCHHHHHH
Confidence 35678899999999876 35566 8899 999999999 99 999999999997 666666 4899999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCC-CcHHHHHHHhCcHHHHHHH
Q 006942 81 AKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDG-ANVLSFLIAANLYDVALDL 159 (624)
Q Consensus 81 ~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G-~t~Lh~A~~~~~~~~v~~L 159 (624)
..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++++++.+. ++..| .||||+|+..|+.+++++|
T Consensus 71 ~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~~t~L~~A~~~~~~~~v~~L 148 (285)
T 3kea_A 71 TLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF-YGKTGWKTSFYHAVMLNDVSIVSYF 148 (285)
T ss_dssp TSSSCHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG-CSSSGGGSHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCc-cCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999999988 788999999999999999999999999999999888 89999 7999999999999999999
Q ss_pred HHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCc
Q 006942 160 LKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSK 239 (624)
Q Consensus 160 l~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (624)
++.+++..
T Consensus 149 l~~g~~~~------------------------------------------------------------------------ 156 (285)
T 3kea_A 149 LSEIPSTF------------------------------------------------------------------------ 156 (285)
T ss_dssp HTTSCTTC------------------------------------------------------------------------
T ss_pred HhCCCccc------------------------------------------------------------------------
Confidence 98754320
Q ss_pred ccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHH
Q 006942 240 ESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAA 319 (624)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa 319 (624)
....|.||||+|+
T Consensus 157 -------------------------------------------------------------------~~~~g~t~L~~A~ 169 (285)
T 3kea_A 157 -------------------------------------------------------------------DLAILLSCIHITI 169 (285)
T ss_dssp -------------------------------------------------------------------CCSTHHHHHHHHH
T ss_pred -------------------------------------------------------------------cccCCccHHHHHH
Confidence 1125688889999
Q ss_pred HcCCHHHHHHHHHccCCCceecCCCCCcH-HHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhcCCC
Q 006942 320 ILGIPEVVNEFIMAYDSSSNWSNQDGHTI-FDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVPS 394 (624)
Q Consensus 320 ~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~~~ 394 (624)
..|+.+++++|+++ ++++...|..|+|| ||+|+.+++.+++++|++.| ..+|.+| |.|+..|+.
T Consensus 170 ~~g~~~~v~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g---ad~~~~~-------~~a~~~~~~ 234 (285)
T 3kea_A 170 KNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD---INIYSAN-------LENVLLDDA 234 (285)
T ss_dssp HTTCHHHHHHHHHH-HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC---BCSTTTT-------GGGGTTTCH
T ss_pred HcChHHHHHHHHHc-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC---CCCCCCC-------hhhhhcCCH
Confidence 99999999999998 88877668899997 99999999999999999888 4556776 356666653
No 28
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=274.89 Aligned_cols=229 Identities=13% Similarity=0.092 Sum_probs=197.7
Q ss_pred cCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCC
Q 006942 25 IVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHG 104 (624)
Q Consensus 25 ~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~ 104 (624)
+++.| .||||.|+. .| +.++++.|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++.....+.
T Consensus 5 ~d~~~-~~~l~~A~~----~g---~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 74 (240)
T 3eu9_A 5 IDDYS-TWDIVKATQ----YG---IYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD 74 (240)
T ss_dssp CSCGG-GCCHHHHHH----TT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT
T ss_pred ccccc-chHHHHHHH----cC---ChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCC
Confidence 37888 999999999 99 999999999997 678899999999999999999999999999999986667777
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcC
Q 006942 105 EGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQK 184 (624)
Q Consensus 105 ~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~ 184 (624)
.|.||||+|+..|+.+++++|++.+.+.+. .+..|.||||+|+..|+.++++.|++.+.++ ...|..|.||||+|+..
T Consensus 75 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~ 152 (240)
T 3eu9_A 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYR 152 (240)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred cCCChhHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHh
Confidence 799999999999999999999999999888 8999999999999999999999999987765 67789999999999965
Q ss_pred CCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHH
Q 006942 185 PYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRM 264 (624)
Q Consensus 185 ~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (624)
+.. ..
T Consensus 153 ~~~------~~--------------------------------------------------------------------- 157 (240)
T 3eu9_A 153 THS------VD--------------------------------------------------------------------- 157 (240)
T ss_dssp CCS------ST---------------------------------------------------------------------
T ss_pred CCh------HH---------------------------------------------------------------------
Confidence 321 00
Q ss_pred hhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCC
Q 006942 265 LWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQD 344 (624)
Q Consensus 265 ~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~ 344 (624)
.+++|.....+. ....+..|.||||+|+..|+.++++.|+++ ++++...|..
T Consensus 158 ------------------------~~~~L~~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~ 209 (240)
T 3eu9_A 158 ------------------------PTRLLLTFNVSV---NLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIK 209 (240)
T ss_dssp ------------------------THHHHHHTTCCT---TCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTT
T ss_pred ------------------------HHHHHHhcCCCc---chhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCC
Confidence 112222111111 222334789999999999999999999999 9888766999
Q ss_pred CCcHHHHHHHcCChhHHHHHhcCC
Q 006942 345 GHTIFDHAVLYRREKVFNLIQGVN 368 (624)
Q Consensus 345 G~T~Lh~A~~~~~~~iv~~Ll~~~ 368 (624)
|+||||+|+++|+.+++++|++.+
T Consensus 210 g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 210 GESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp SCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCHHHHHHHcCcHHHHHHHHHhh
Confidence 999999999999999999999887
No 29
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=6.7e-33 Score=271.12 Aligned_cols=218 Identities=15% Similarity=0.160 Sum_probs=189.5
Q ss_pred hhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcH
Q 006942 64 TLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANV 143 (624)
Q Consensus 64 ~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~ 143 (624)
+++.+|.+|.||||+||..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++.+.+.+. ++..|.||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~ 80 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP-KDAEGSTC 80 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCC-CCTTSCCH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCCCcH
Confidence 5678999999999999999999999999999988 788999999999999999999999999999998888 89999999
Q ss_pred HHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCC
Q 006942 144 LSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDL 223 (624)
Q Consensus 144 Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 223 (624)
||+|+..|+.+++++|++.++.....
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~~~~~~------------------------------------------------------ 106 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQMDVNC------------------------------------------------------ 106 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCTTC------------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCccc------------------------------------------------------
Confidence 99999999999999999876432221
Q ss_pred CCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccc
Q 006942 224 DGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWT 303 (624)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~ 303 (624)
T Consensus 107 -------------------------------------------------------------------------------- 106 (237)
T 3b7b_A 107 -------------------------------------------------------------------------------- 106 (237)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCc
Q 006942 304 NFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNN 383 (624)
Q Consensus 304 ~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnT 383 (624)
.+..|.||||+|+..|+.+++++|++. ++++...|..|+||||+|+..|+.+++++|++.+ ..++.+|..|+|
T Consensus 107 ---~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t 179 (237)
T 3b7b_A 107 ---QDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIAEILLAAK---CDLHAVNIHGDS 179 (237)
T ss_dssp ---CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTT---CCTTCCCTTCCC
T ss_pred ---CCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcC---CCCCCcCCCCCC
Confidence 344567888888888899999999999 9988766999999999999999999999999998 557799999999
Q ss_pred hhhhhhhcCCCCCccchHHHhHHHHhHHHHHHhhcC-cccccccCCCCCChhhhhhHHH
Q 006942 384 ILHLAGRLVPSSEVAGAALQMQRELQWFKAIENLVH-PFFREATNDLKQTPREVFTEEH 441 (624)
Q Consensus 384 pLHlAa~~~~~~~~~gaalq~~~~l~~~~~v~~~~~-~~~~~~~N~~G~Tp~dl~~~~~ 441 (624)
|||+|++.++.+ .++.++. ....+.+|++|+||++++....
T Consensus 180 ~L~~A~~~~~~~-----------------~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~ 221 (237)
T 3b7b_A 180 PLHIAARENRYD-----------------CVVLFLSRDSDVTLKNKEGETPLQCASLNS 221 (237)
T ss_dssp HHHHHHHTTCHH-----------------HHHHHHTTTCCTTCCCTTSCCHHHHSCTTC
T ss_pred HHHHHHHhCCHh-----------------HHHHHHHcCCCCCccCCCCCCHHHHHHHHH
Confidence 999999998843 2333332 2457889999999999986543
No 30
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.2e-33 Score=271.82 Aligned_cols=213 Identities=17% Similarity=0.157 Sum_probs=185.4
Q ss_pred CCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCC
Q 006942 5 NDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGN 84 (624)
Q Consensus 5 G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~ 84 (624)
|+.+.++.++++........ +.+| +||||+||. .| +.++|++|++.+ .+++.+|..|.||||+|+..|+
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~-d~~g-~t~L~~A~~----~g---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~ 70 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQT-DRTG-ETALHLAAR----YS---RSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADA 70 (223)
T ss_dssp ---CCEETTEETTCCTTCCC-TTTC-CCHHHHHHH----TT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTC
T ss_pred CcHHHHHHHHHcCCCccccc-CCCC-CchHHHHHH----cC---CHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCC
Confidence 56667777777665544333 7889 999999999 99 999999999997 6788899999999999999999
Q ss_pred HHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCC
Q 006942 85 LRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHP 164 (624)
Q Consensus 85 ~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~ 164 (624)
.+++++|+++++..++.+|..|.||||+|+..|+.+++++|++.+.+.+. .+..|.||||+|+..|+.++++.|++.+.
T Consensus 71 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 149 (223)
T 2f8y_A 71 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLKNGA 149 (223)
T ss_dssp HHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC-cCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999998866888999999999999999999999999999998888 89999999999999999999999998755
Q ss_pred CCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccC
Q 006942 165 TIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRF 244 (624)
Q Consensus 165 ~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (624)
+. +.
T Consensus 150 ~~-~~--------------------------------------------------------------------------- 153 (223)
T 2f8y_A 150 NK-DM--------------------------------------------------------------------------- 153 (223)
T ss_dssp CT-TC---------------------------------------------------------------------------
T ss_pred CC-CC---------------------------------------------------------------------------
Confidence 43 11
Q ss_pred CCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCH
Q 006942 245 GSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIP 324 (624)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~ 324 (624)
.+..|.||||+|+..|+.
T Consensus 154 --------------------------------------------------------------~~~~g~t~L~~A~~~~~~ 171 (223)
T 2f8y_A 154 --------------------------------------------------------------QNNREETPLFLAAREGSY 171 (223)
T ss_dssp --------------------------------------------------------------CCTTCCCHHHHHHHHTCH
T ss_pred --------------------------------------------------------------cCCCCcCHHHHHHHcCCH
Confidence 345667888888888999
Q ss_pred HHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCC
Q 006942 325 EVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVN 368 (624)
Q Consensus 325 ~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 368 (624)
++++.|+++ +++....|..|+||||+|+.+++.+++++|++++
T Consensus 172 ~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g 214 (223)
T 2f8y_A 172 ETAKVLLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214 (223)
T ss_dssp HHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHc-CCCCccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence 999999999 9988766999999999999999999999999988
No 31
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.3e-33 Score=293.04 Aligned_cols=223 Identities=16% Similarity=0.148 Sum_probs=185.9
Q ss_pred hhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCc
Q 006942 63 ETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGAN 142 (624)
Q Consensus 63 ~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t 142 (624)
.+.+..|.+|.||||+||..|+.++|++|++++++ ++.+|..|.||||+||..|+.+++++|++.+++. .+.+|.|
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t 86 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQK 86 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBC
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCC
Confidence 34567889999999999999999999999999988 7899999999999999999999999999999844 4568999
Q ss_pred HHHHHHHhCcHHHHHHHHHh----CCCCC----------------cccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhh
Q 006942 143 VLSFLIAANLYDVALDLLKR----HPTIG----------------RDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIY 202 (624)
Q Consensus 143 ~Lh~A~~~~~~~~v~~Ll~~----~~~l~----------------~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~ 202 (624)
|||+|+..|+.++++.|++. +.+.. ...|..|.||||+|+..+.
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~---------------- 150 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGP---------------- 150 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCG----------------
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCC----------------
Confidence 99999999999999999998 44321 1267889999999997741
Q ss_pred ccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhh
Q 006942 203 NCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQ 282 (624)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 282 (624)
T Consensus 151 -------------------------------------------------------------------------------- 150 (364)
T 3ljn_A 151 -------------------------------------------------------------------------------- 150 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCC-----ceecCCCCCcHHHHHHHcCC
Q 006942 283 KLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSS-----SNWSNQDGHTIFDHAVLYRR 357 (624)
Q Consensus 283 ~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d-----~~~~d~~G~T~Lh~A~~~~~ 357 (624)
.+...+++|.....++ + ..+..|.||||+|+..|+.++|++|++. +++ +...|..|+||||+|+.+|+
T Consensus 151 --~~~~~v~~Ll~~ga~~---~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~g~t~L~~A~~~g~ 223 (364)
T 3ljn_A 151 --EYLEMIKILVQLGASP---T-AKDKADETPLMRAMEFRNREALDLMMDT-VPSKSSLRLDYANKQGNSHLHWAILINW 223 (364)
T ss_dssp --GGHHHHHHHHHHTCCT---T-CCCTTSCCHHHHHHHTTCHHHHHHHHHH-CSCSSSCCTTCCCTTCCCTTHHHHTTTC
T ss_pred --chHHHHHHHHHcCCCC---c-ccCCCCCCHHHHHHHcCCHHHHHHHHhc-ccccccccccccCCCCCcHHHHHHHcCC
Confidence 0222344433332222 2 2677899999999999999999999999 888 55559999999999999999
Q ss_pred hhHHHHHhcCCccccccccccCCCCchhhhhhhcCCCC
Q 006942 358 EKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVPSS 395 (624)
Q Consensus 358 ~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~ 395 (624)
.+++++|++.+ ..+|.+|.+|+||||+|+..|+.+
T Consensus 224 ~~~v~~Ll~~g---ad~~~~d~~g~tpL~~A~~~g~~~ 258 (364)
T 3ljn_A 224 EDVAMRFVEMG---IDVNMEDNEHTVPLYLSVRAAMVL 258 (364)
T ss_dssp HHHHHHHHTTT---CCTTCCCTTSCCHHHHHHHTCCHH
T ss_pred HHHHHHHHHcC---CCCCCCCCCCCCHHHHHHHhChHH
Confidence 99999999998 567799999999999999999854
No 32
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=281.39 Aligned_cols=226 Identities=18% Similarity=0.181 Sum_probs=161.4
Q ss_pred CccCCCHHHHHHHHHcCccc-------cccccCCCCCchHHHHHHhhhhhcCCcchH-HHHHHHHHccCchhhccCCCCC
Q 006942 1 MIEKNDWQGVEDFVTNHPDA-------LTAKIVEPGSMTIFHMIVELLIDAESDEAI-CLLDKLASKVDPETLARQDNHG 72 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~-------~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~-~iv~~Ll~~~~~~~~~~~d~~G 72 (624)
||.+|+.+.|+.||+..... ++.. +..| .||||.|+. .+ +. ++++.|++.| .++|.+|.+|
T Consensus 18 A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~-~~~~-~t~L~~a~~----~~---~~~~~v~~Ll~~G--advn~~d~~G 86 (269)
T 4b93_B 18 AVADGDLEMVRYLLEWTEEDLEDAEDTVSAA-DPEF-CHPLCQCPK----CA---PAQKRLAKVPASG--LGVNVTSQDG 86 (269)
T ss_dssp HHHTTCHHHHHHHHTCC-------------------------------------------------CC--CCTTCCCTTS
T ss_pred HHHcCCHHHHHHHHHCCCccccccccccccc-CccC-CCHHHHHHH----hC---CHHHHHHHHHHCC--CCCCCcCCCC
Confidence 68899999999999875432 3333 6788 999999999 87 65 5889999997 7889999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCc
Q 006942 73 HTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANL 152 (624)
Q Consensus 73 ~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~ 152 (624)
.||||+||..|+.++|++|++.+++ ++.++.+|.||+|+|+..++.+++++|++.+++++. +|..|.||||+|+..|+
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~-~d~~g~TpL~~A~~~g~ 164 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK-KDLSGNTPLIYACSGGH 164 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCC
Confidence 9999999999999999999999998 788999999999999999999999999999999988 89999999999999999
Q ss_pred HHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhh
Q 006942 153 YDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIV 232 (624)
Q Consensus 153 ~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (624)
.++++.|++.+.++ +.
T Consensus 165 ~~~v~~Ll~~gadv-n~--------------------------------------------------------------- 180 (269)
T 4b93_B 165 HELVALLLQHGASI-NA--------------------------------------------------------------- 180 (269)
T ss_dssp GGGHHHHHHTTCCT-TC---------------------------------------------------------------
T ss_pred HHHHHHHHHCCCCC-Cc---------------------------------------------------------------
Confidence 99999999876543 11
Q ss_pred hhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCcccc
Q 006942 233 TSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLS 312 (624)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~ 312 (624)
.+..|.
T Consensus 181 --------------------------------------------------------------------------~~~~g~ 186 (269)
T 4b93_B 181 --------------------------------------------------------------------------SNNKGN 186 (269)
T ss_dssp --------------------------------------------------------------------------BCTTSC
T ss_pred --------------------------------------------------------------------------cccCCC
Confidence 345667
Q ss_pred HHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCc
Q 006942 313 VAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNN 383 (624)
Q Consensus 313 tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnT 383 (624)
||||+|+..|+.++|+.|+++ |+|+...|.+|+||||+|++++ +++++|...+ ..++..|..|+|
T Consensus 187 t~Lh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~~--~i~~lL~~l~---~~~~~~~~~~~t 251 (269)
T 4b93_B 187 TALHEAVIEKHVFVVELLLLH-GASVQVLNKRQRTAVDCAEQNS--KIMELLQVVP---SCVASLDDVAET 251 (269)
T ss_dssp BHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCSGGGSCTTC--HHHHHTTC-----------------
T ss_pred cHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHhCC--cHHHHHHHHH---HhchhhhhccCC
Confidence 888888888999999999999 9998877999999999998776 4666664443 223344444444
No 33
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.8e-32 Score=266.30 Aligned_cols=215 Identities=19% Similarity=0.150 Sum_probs=188.7
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhcc-CCCCCChHHHHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLAR-QDNHGHTAATLS 79 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~-~d~~G~TpLh~A 79 (624)
|+..|+.+.++.++++.+.....+ +.+| +||||+|+. .| +.+++++|++.+.+.+++. .|..|.||||+|
T Consensus 9 A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g-~t~L~~A~~----~~---~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 9 ACMENEFFKVQELLHSKPSLLLQK-DQDG-RIPLHWSVS----FQ---AHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp HHHTTCHHHHHHHHHHCGGGTTCC-CTTS-CCHHHHHHH----TT---CHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHhCCHHHHHHHHhcCccccccC-CCCC-CCHHHHHHH----cC---CHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 678999999999999988777656 8999 999999999 99 9999999999986666666 899999999999
Q ss_pred HHcCCHHHHHHHHhcC--CCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHH
Q 006942 80 AAKGNLRALKLLVKYN--PDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVAL 157 (624)
Q Consensus 80 a~~g~~~iv~~Ll~~~--~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~ 157 (624)
+..|+.+++++|++++ ++ ++.+|..|.||||+|+..|+.+++++|++++.+.+. ++..|.||||+|+..|+.++++
T Consensus 80 ~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~ 157 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIE 157 (228)
T ss_dssp HHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999997 65 778899999999999999999999999999999888 8999999999999999999999
Q ss_pred HHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhccc
Q 006942 158 DLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIH 237 (624)
Q Consensus 158 ~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (624)
.|++.++...+.
T Consensus 158 ~Ll~~g~~~~~~-------------------------------------------------------------------- 169 (228)
T 2dzn_A 158 LLCGLGKSAVNW-------------------------------------------------------------------- 169 (228)
T ss_dssp HHHTTTCCCSCC--------------------------------------------------------------------
T ss_pred HHHhcCcccccC--------------------------------------------------------------------
Confidence 999876322222
Q ss_pred CcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHH
Q 006942 238 SKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLA 317 (624)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~ 317 (624)
.+..|.||||+
T Consensus 170 ---------------------------------------------------------------------~d~~g~t~L~~ 180 (228)
T 2dzn_A 170 ---------------------------------------------------------------------QDKQGWTPLFH 180 (228)
T ss_dssp ---------------------------------------------------------------------CCTTSCCHHHH
T ss_pred ---------------------------------------------------------------------cCCCCCCHHHH
Confidence 34556777777
Q ss_pred HHHcCCHHHHHHHH-HccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcC
Q 006942 318 AAILGIPEVVNEFI-MAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGV 367 (624)
Q Consensus 318 Aa~~g~~~iv~~Ll-~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 367 (624)
|+..|+.++++.|+ +. +.+....|.+|+||||+|+.. ++.++|+++
T Consensus 181 A~~~~~~~~v~~Ll~~~-ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 181 ALAEGHGDAAVLLVEKY-GAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp HHHTTCHHHHHHHHHHH-CCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred HHHcCCHHHHHHHHHhc-CCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 88888999999999 77 888776699999999999654 567777653
No 34
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5.6e-33 Score=272.16 Aligned_cols=217 Identities=19% Similarity=0.174 Sum_probs=189.6
Q ss_pred CccCCCHHHHHHHHH---cCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHH
Q 006942 1 MIEKNDWQGVEDFVT---NHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAAT 77 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~---~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh 77 (624)
|+..|+.+.++.+++ +.+..++.+ +..| .||||+|+. .| +.+++++|++.+ .+++.+|..|.||||
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g-~t~L~~A~~----~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~l~ 84 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIY-NNLR-QTPLHLAVI----TT---LPSVVRLLVTAG--ASPMALDRHGQTAAH 84 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTS-CCHHHHHHH----TT---CHHHHHHHHHTT--CCTTCCCTTSCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcc-cccC-CCHHHHHHH----cC---CHHHHHHHHHcC--CCccccCCCCCCHHH
Confidence 678999999999987 355666666 8899 999999999 99 999999999997 678889999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCC---CcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHHHHHhCcH
Q 006942 78 LSAAKGNLRALKLLVKYNPD---LTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSG-KDGANVLSFLIAANLY 153 (624)
Q Consensus 78 ~Aa~~g~~~iv~~Ll~~~~~---l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~G~t~Lh~A~~~~~~ 153 (624)
+|+..|+.+++++|++.++. .++.+|..|.||||+|+..|+.+++++|++.+.+.+. .+ ..|.||||+|+..|+.
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA-VDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTTCCCHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-ccccCCCcHHHHHHHcCCH
Confidence 99999999999999999772 3778899999999999999999999999999998887 66 8899999999999999
Q ss_pred HHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhh
Q 006942 154 DVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVT 233 (624)
Q Consensus 154 ~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (624)
++++.|++.+.++ +.
T Consensus 164 ~~v~~Ll~~g~~~-~~---------------------------------------------------------------- 178 (241)
T 1k1a_A 164 SMVQLLLQHGANV-NA---------------------------------------------------------------- 178 (241)
T ss_dssp HHHHHHHHTTCCT-TC----------------------------------------------------------------
T ss_pred HHHHHHHHcCCCC-CC----------------------------------------------------------------
Confidence 9999999876543 11
Q ss_pred hcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccH
Q 006942 234 SKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSV 313 (624)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~t 313 (624)
.+..|.|
T Consensus 179 -------------------------------------------------------------------------~~~~g~t 185 (241)
T 1k1a_A 179 -------------------------------------------------------------------------QMYSGSS 185 (241)
T ss_dssp -------------------------------------------------------------------------BCTTSCB
T ss_pred -------------------------------------------------------------------------cCCCCCC
Confidence 3455678
Q ss_pred HHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCC
Q 006942 314 AMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVN 368 (624)
Q Consensus 314 pLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 368 (624)
|||+|+..|+.++++.|+++ ++++...|..|+||||+|+.+|+.++++.|.+.+
T Consensus 186 ~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 186 ALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239 (241)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred HHHHHHHcCCHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence 88888888999999999999 9988767999999999999999999999887654
No 35
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.8e-32 Score=276.55 Aligned_cols=268 Identities=15% Similarity=0.130 Sum_probs=202.7
Q ss_pred HHHhhhhhcCCcchHHHHHHHHHccCchh-------hccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCh
Q 006942 36 MIVELLIDAESDEAICLLDKLASKVDPET-------LARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFL 108 (624)
Q Consensus 36 ~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~-------~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~T 108 (624)
.++. .| +.+.++.++....... ....+..|.||||.||..|+.++|+.|++++++ ++.+|..|.|
T Consensus 4 ~~a~----~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t 75 (299)
T 1s70_B 4 ADAK----QK---RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLT 75 (299)
T ss_dssp HHHH----HH---HHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCB
T ss_pred hHHH----HH---HHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCC
Confidence 4666 77 8888888887642211 122345678999999999999999999999988 7889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCC
Q 006942 109 PVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAF 188 (624)
Q Consensus 109 PLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~ 188 (624)
|||+||..|+.+++++|++.+++.+. .+..|.||||+|+..|+.+++++|++.+.++ ...|.+|.||||+|+..+.
T Consensus 76 ~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~-- 151 (299)
T 1s70_B 76 ALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAM-- 151 (299)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHH--
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcch--
Confidence 99999999999999999999999888 8999999999999999999999999998765 6678999999999885420
Q ss_pred CCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhc
Q 006942 189 ASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNA 268 (624)
Q Consensus 189 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (624)
T Consensus 152 -------------------------------------------------------------------------------- 151 (299)
T 1s70_B 152 -------------------------------------------------------------------------------- 151 (299)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceec-CCCCCc
Q 006942 269 XMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWS-NQDGHT 347 (624)
Q Consensus 269 ~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~-d~~G~T 347 (624)
.+++..+...........+..+.++++ ..+..++.. +...... +..|+|
T Consensus 152 ---------------------~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~-~~~~~~~~~~~g~t 201 (299)
T 1s70_B 152 ---------------------EELLQNEVNRQGVDIEAARKEEERIML--------RDARQWLNS-GHINDVRHAKSGGT 201 (299)
T ss_dssp ---------------------HHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHHHH-TCCCCCCCTTTCCC
T ss_pred ---------------------HHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHHhc-cCcchhhhcCCCCC
Confidence 011111111000000001111233333 345566776 6666656 899999
Q ss_pred HHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhcCCCCCccchHHHhHHHHhHHHHHHhhcC-ccccccc
Q 006942 348 IFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLVPSSEVAGAALQMQRELQWFKAIENLVH-PFFREAT 426 (624)
Q Consensus 348 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~gaalq~~~~l~~~~~v~~~~~-~~~~~~~ 426 (624)
|||+|+.+|+.+++++|++.+ ..+|.+|.+|+||||+|+..|+.+ .++.++. ....+.+
T Consensus 202 ~L~~A~~~g~~~~v~~Ll~~g---~d~~~~d~~g~tpL~~A~~~~~~~-----------------~v~~Ll~~gad~~~~ 261 (299)
T 1s70_B 202 ALHVAAAKGYTEVLKLLIQAR---YDVNIKDYDGWTPLHAAAHWGKEE-----------------ACRILVENLCDMEAV 261 (299)
T ss_dssp HHHHHHHHTCHHHHHHHHTTT---CCTTCCCTTCCCHHHHHHHTTCHH-----------------HHHHHHHTTCCTTCC
T ss_pred HHHHHHHCCcHHHHHHHHHcC---CCCCCcCCCCCcHHHHHHhcCCHH-----------------HHHHHHHcCCCCCCc
Confidence 999999999999999999998 567799999999999999999853 1222222 2357889
Q ss_pred CCCCCChhhhhhHHHHHhH
Q 006942 427 NDLKQTPREVFTEEHKELV 445 (624)
Q Consensus 427 N~~G~Tp~dl~~~~~~~l~ 445 (624)
|.+|+||++++.+...+..
T Consensus 262 d~~g~t~l~~A~~~~~~~l 280 (299)
T 1s70_B 262 NKVGQTAFDVADEDILGYL 280 (299)
T ss_dssp CTTSCCTTTSCCSGGGHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999876544443
No 36
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.3e-33 Score=274.51 Aligned_cols=219 Identities=14% Similarity=0.135 Sum_probs=183.5
Q ss_pred cCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCc--hhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccC
Q 006942 25 IVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDP--ETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIR 102 (624)
Q Consensus 25 ~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~--~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~ 102 (624)
.|.+| +||||+|+. .| +.++++.|++.+.. .+++.+|..|.||||+|+..|+.+++++|++++++ ++.+
T Consensus 4 ~d~~g-~t~L~~A~~----~g---~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~ 74 (236)
T 1ikn_D 4 LTEDG-DSFLHLAII----HE---EKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELR 74 (236)
T ss_dssp ---CC-CCTTHHHHH----TT---CSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCC
T ss_pred CCCCC-CchhHHHHH----cC---ChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCc
Confidence 38899 999999999 99 99999999998633 26899999999999999999999999999999888 7889
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhcCCC------ccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCC
Q 006942 103 HGEGFLPVHDAALYGHKDTFHYLLEVTHGV------DIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRI 176 (624)
Q Consensus 103 n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~------~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~T 176 (624)
|..|.||||+|+..|+.+++++|++.++.. .. .+..|.||||+|+..|+.+++++|++.+.++.. +
T Consensus 75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~------ 146 (236)
T 1ikn_D 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA-TNYNGHTCLHLASIHGYLGIVELLVSLGADVNA-Q------ 146 (236)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC-CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC-C------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-C------
Confidence 999999999999999999999999998652 33 788899999999999999999999988654311 1
Q ss_pred HHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhh
Q 006942 177 ILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGA 256 (624)
Q Consensus 177 pLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (624)
T Consensus 147 -------------------------------------------------------------------------------- 146 (236)
T 1ikn_D 147 -------------------------------------------------------------------------------- 146 (236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCC
Q 006942 257 MLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDS 336 (624)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~ 336 (624)
.+..|.||||+|+..|+.+++++|+++ |+
T Consensus 147 --------------------------------------------------~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga 175 (236)
T 1ikn_D 147 --------------------------------------------------EPCNGRTALHLAVDLQNPDLVSLLLKC-GA 175 (236)
T ss_dssp --------------------------------------------------CTTTCCCHHHHHHHTTCHHHHHHHHTT-TC
T ss_pred --------------------------------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence 222667888888888999999999999 99
Q ss_pred CceecCCCCCcHHHHHHHcCChhHHHHHhcCC-ccccccccccCCCCchhhhhhhcCC
Q 006942 337 SSNWSNQDGHTIFDHAVLYRREKVFNLIQGVN-FTTFLFSSRDKAGNNILHLAGRLVP 393 (624)
Q Consensus 337 d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~-~~~~~vn~~D~~GnTpLHlAa~~~~ 393 (624)
++...|..|+||||+|+.+++.+++++|++.+ + .....++.+|.||.+.+.....
T Consensus 176 ~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~~~ 231 (236)
T 1ikn_D 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE--NLQMLPESEDEESYDTESEFTE 231 (236)
T ss_dssp CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG--GGSSCCCCCTTTCCCCC-----
T ss_pred CCCcccCCCCCHHHHHHccCchHHHHHHHHcchh--hhhcCCccchHHHHhhhccccc
Confidence 98877999999999999999999999999998 3 2345789999999998876654
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.98 E-value=9.4e-32 Score=260.36 Aligned_cols=201 Identities=17% Similarity=0.148 Sum_probs=174.6
Q ss_pred hHHHHHHHHHccCchhhc-cCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHH
Q 006942 49 AICLLDKLASKVDPETLA-RQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLE 127 (624)
Q Consensus 49 ~~~iv~~Ll~~~~~~~~~-~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~ 127 (624)
+.+++++|++.+ .+++ ..|.+|.||||+||..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++
T Consensus 3 ~~~~i~~Ll~~g--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 3 APAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp --CCEETTEETT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHcC--CCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 788899999987 3444 4589999999999999999999999999887 77889999999999999999999999999
Q ss_pred hcC-CCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhcccc
Q 006942 128 VTH-GVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIP 206 (624)
Q Consensus 128 ~~~-~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~ 206 (624)
.++ ..+. .+..|.||||+|+..++.++++.|++.+.++ +.
T Consensus 80 ~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~------------------------------------- 120 (223)
T 2f8y_A 80 NRATDLDA-RMHDGTTPLILAARLAVEGMLEDLINSHADV-NA------------------------------------- 120 (223)
T ss_dssp BTTSCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TC-------------------------------------
T ss_pred cCCCCccc-CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cC-------------------------------------
Confidence 987 4555 8899999999999999999999999875542 11
Q ss_pred ccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhh
Q 006942 207 VEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTH 286 (624)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 286 (624)
T Consensus 121 -------------------------------------------------------------------------------- 120 (223)
T 2f8y_A 121 -------------------------------------------------------------------------------- 120 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhc
Q 006942 287 MRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQG 366 (624)
Q Consensus 287 ~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~ 366 (624)
.+..|.||||+|+..|+.+++++|++. +++....|..|+||||+|+.+++.+++++|++
T Consensus 121 --------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 179 (223)
T 2f8y_A 121 --------------------VDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLD 179 (223)
T ss_dssp --------------------BCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred --------------------cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 344567888888888999999999999 99887779999999999999999999999999
Q ss_pred CCccccccccccCCCCchhhhhhhcCCCC
Q 006942 367 VNFTTFLFSSRDKAGNNILHLAGRLVPSS 395 (624)
Q Consensus 367 ~~~~~~~vn~~D~~GnTpLHlAa~~~~~~ 395 (624)
.+ ..++.+|..|+||||+|++.++.+
T Consensus 180 ~g---a~~~~~~~~g~t~l~~A~~~~~~~ 205 (223)
T 2f8y_A 180 HF---ANRDITDHMDRLPRDIAQERMHHD 205 (223)
T ss_dssp TT---CCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred cC---CCCccccccCCCHHHHHHHhcchH
Confidence 98 556799999999999999999843
No 38
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=2.8e-31 Score=258.72 Aligned_cols=145 Identities=20% Similarity=0.189 Sum_probs=120.9
Q ss_pred CCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc----ccCC
Q 006942 28 PGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLT----NIRH 103 (624)
Q Consensus 28 ~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~----~~~n 103 (624)
.| +||||.||. .| +.++|+.|++.. ..+++.+|.+|.||||+|+..|+.+++++|++.+++.. +.+|
T Consensus 2 ~g-~t~L~~A~~----~g---~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 72 (232)
T 2rfa_A 2 IW-ESPLLLAAK----EN---DVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL 72 (232)
T ss_dssp CT-TCHHHHHHH----TT---CHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTT
T ss_pred CC-CCHHHHHHH----cC---CHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccC
Confidence 36 999999999 99 999999999972 37789999999999999999999999999999988732 5677
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCC-------------CCCcHHHHHHHhCcHHHHHHHHHhCCCCCccc
Q 006942 104 GEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGK-------------DGANVLSFLIAANLYDVALDLLKRHPTIGRDS 170 (624)
Q Consensus 104 ~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~-------------~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~ 170 (624)
..|.||||+|+..|+.+++++|++.+++.+. .+. +|.||||+|+..|+.++++.|++.+.++ +.+
T Consensus 73 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~ 150 (232)
T 2rfa_A 73 YEGQTALHIAVINQNVNLVRALLARGASVSA-RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQ 150 (232)
T ss_dssp TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCC
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHhCCCCCCc-ccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCC
Confidence 8999999999999999999999999988776 443 7899999999999999999998876654 344
Q ss_pred CCCCCCHHHHHHc
Q 006942 171 IDSRRIILNTLAQ 183 (624)
Q Consensus 171 d~~G~TpLh~Aa~ 183 (624)
|.+|.||||+|+.
T Consensus 151 d~~g~t~L~~A~~ 163 (232)
T 2rfa_A 151 DSLGNTVLHILIL 163 (232)
T ss_dssp CTTSCCHHHHHHT
T ss_pred CCCCCCHHHHHHH
Confidence 5555555555543
No 39
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=3.9e-31 Score=258.50 Aligned_cols=221 Identities=16% Similarity=0.083 Sum_probs=188.5
Q ss_pred hccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHH
Q 006942 65 LARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVL 144 (624)
Q Consensus 65 ~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~L 144 (624)
++..|..|.||||.|+..|+.++++.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.+++.....+..|.|||
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L 80 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL 80 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence 356788999999999999999999999999988 7889999999999999999999999999999887764566799999
Q ss_pred HHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCC
Q 006942 145 SFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLD 224 (624)
Q Consensus 145 h~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 224 (624)
|+|+..|+.++++.|++.+.+. ...|..|.||||+|+..++
T Consensus 81 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~-------------------------------------- 121 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGH-------------------------------------- 121 (240)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC--------------------------------------
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCH--------------------------------------
Confidence 9999999999999999987765 5678999999999998742
Q ss_pred CcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhccccc
Q 006942 225 GDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTN 304 (624)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~ 304 (624)
.++++.+.+......
T Consensus 122 -----------------------------------------------------------------~~~~~~Ll~~~~~~~ 136 (240)
T 3eu9_A 122 -----------------------------------------------------------------TSIVAYLIAKGQDVD 136 (240)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHTTCCTT
T ss_pred -----------------------------------------------------------------HHHHHHHHhcCCCcc
Confidence 112222222222112
Q ss_pred ccCCccccHHHHHHHHcCC-HHHHHHHHHccCCCceecC-CCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCC
Q 006942 305 FQNSAQLSVAMLAAAILGI-PEVVNEFIMAYDSSSNWSN-QDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGN 382 (624)
Q Consensus 305 ~~~~~~g~tpLh~Aa~~g~-~~iv~~Ll~~~~~d~~~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~Gn 382 (624)
..+..|.||||+|+..|+ .++++.|++. +++....+ ..|+||||+|+.+++.+++++|++.+ ..++.+|.+|+
T Consensus 137 -~~~~~g~t~l~~a~~~~~~~~~~~~L~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~ 211 (240)
T 3eu9_A 137 -MMDQNGMTPLMWAAYRTHSVDPTRLLLTF-NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG---ANVDAQNIKGE 211 (240)
T ss_dssp -CCCTTSCCHHHHHHHHCCSSTTHHHHHHT-TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT---CCTTCBCTTSC
T ss_pred -ccCCCCCcHHHHHHHhCChHHHHHHHHhc-CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCC
Confidence 267788999999997776 8999999999 99988775 49999999999999999999999998 55779999999
Q ss_pred chhhhhhhcCCCC
Q 006942 383 NILHLAGRLVPSS 395 (624)
Q Consensus 383 TpLHlAa~~~~~~ 395 (624)
||||+|++.++.+
T Consensus 212 t~l~~A~~~~~~~ 224 (240)
T 3eu9_A 212 SALDLAKQRKNVW 224 (240)
T ss_dssp BHHHHHHHTTCHH
T ss_pred CHHHHHHHcCcHH
Confidence 9999999999853
No 40
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=1.1e-30 Score=248.57 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=130.4
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGE 105 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~ 105 (624)
+..+ .||||.||. .| +.+.++.|++.+ +.+++..|.+|.||||+|+..|+.+++++|++++++ ++.+|..
T Consensus 2 ~~~~-~~~L~~A~~----~g---~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 71 (201)
T 3hra_A 2 KTYE-VGALLEAAN----QR---DTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSI 71 (201)
T ss_dssp -CCC-TTHHHHHHH----TT---CHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred Cccc-ccHHHHHHH----hc---cHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCC
Confidence 4567 899999999 99 999999999986 457899999999999999999999999999999988 7889999
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcC-CCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcC
Q 006942 106 GFLPVHDAALYGHKDTFHYLLEVTH-GVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQK 184 (624)
Q Consensus 106 G~TPLh~Aa~~g~~~iv~~Ll~~~~-~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~ 184 (624)
|.||||+|+..|+.+++++|++.+. +.+. .+..|.||||+|+..|+.++++.|++.++...+.+|..|.||||+|+..
T Consensus 72 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 150 (201)
T 3hra_A 72 SDSPYLYAGAQGRTEILAYMLKHATPDLNK-HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL 150 (201)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSCCCTTC-CCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHS
T ss_pred CCCHHHHHHHcCCHHHHHHHHhccCccccc-ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHh
Confidence 9999999999999999999996554 5555 8999999999999999999999999998555566677777777777654
No 41
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=3.2e-32 Score=279.89 Aligned_cols=267 Identities=10% Similarity=-0.021 Sum_probs=182.5
Q ss_pred cCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhcc-----------------CCCCCChHHHH
Q 006942 16 NHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLAR-----------------QDNHGHTAATL 78 (624)
Q Consensus 16 ~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~-----------------~d~~G~TpLh~ 78 (624)
+.+..++.+ +..| .|++| | +.++|+.|++++. +.+. ......+.+|+
T Consensus 40 ~~ga~i~~~-~~~g-~~~~~---------g---~~~~v~~Ll~~g~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 103 (327)
T 1sw6_A 40 SSPLKIMKA-LPSP-VVNDN---------E---QKMKLEAFLQRLL--FPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV 103 (327)
T ss_dssp TSSCCCEEC-BCCC-CCCCH---------H---HHHHHHHHHHHHH--C-------------------------------
T ss_pred hCCcccccC-CCCC-CcccC---------c---hhHHHHHHHHhcc--CCccccchHhhhcccccccccccCCccchhHH
Confidence 345566666 8889 99865 6 9999999999872 2221 11111234588
Q ss_pred HHHcCCHHHHHHHHhcCCCCccc-CCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCc---HH
Q 006942 79 SAAKGNLRALKLLVKYNPDLTNI-RHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANL---YD 154 (624)
Q Consensus 79 Aa~~g~~~iv~~Ll~~~~~l~~~-~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~---~~ 154 (624)
|+..+..+++++|++.+.+ ++. +|..|.||||+||..|+.++|++|++++++++. ++.+|+||||+|+..|+ .+
T Consensus 104 a~~~~~~~~~~~l~~~g~d-vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~-~d~~g~TpLh~A~~~g~~~~~~ 181 (327)
T 1sw6_A 104 SFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSG 181 (327)
T ss_dssp CHHHHHHHHHHHCTTSCCC-SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTT
T ss_pred HHHhhHHHHHHHHHhcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHhcccccHH
Confidence 8888899999999999888 677 899999999999999999999999999999998 99999999999999998 68
Q ss_pred HHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhh
Q 006942 155 VALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTS 234 (624)
Q Consensus 155 ~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (624)
+++.|++......+.+|..|+||||+|++.... ..+....+.++......
T Consensus 182 ~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~---~g~~~~v~~Ll~~~~~~--------------------------- 231 (327)
T 1sw6_A 182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGM---TGCSAAAKYYLDILMGW--------------------------- 231 (327)
T ss_dssp CHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTS---TTCHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHhhhccccCCCCCCCCHHHHHHHHccc---cccHHHHHHHHHHHHHH---------------------------
Confidence 888888876555678899999999999972100 01111222111110000
Q ss_pred cccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHH
Q 006942 235 KIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVA 314 (624)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tp 314 (624)
+ ... ....+... +.....+ ....+..|.||
T Consensus 232 -----------------------~------~~~----~~~~i~~~-------------~~~~g~~----~~~~~~~g~t~ 261 (327)
T 1sw6_A 232 -----------------------I------VKK----QNRPIQSG-------------TNEKESK----PNDKNGERKDS 261 (327)
T ss_dssp -----------------------H------HHG----GGCCEEEC---------------------------------CH
T ss_pred -----------------------H------hcc----cchHHHhh-------------hhcccCC----cccccccCCCh
Confidence 0 000 00000000 0000001 11267789999
Q ss_pred HHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCchhhhhhhcC
Q 006942 315 MLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNILHLAGRLV 392 (624)
Q Consensus 315 Lh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTpLHlAa~~~ 392 (624)
||.|+. +++|+++ + +...|..|+||||+|+.+|+.+++++|++.+ ..+|.+|.+|+||||+|++.|
T Consensus 262 L~~a~~------~~~Ll~~-~--~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G---ad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 262 ILENLD------LKWIIAN-M--LNAQDSNGDTCLNIAARLGNISIVDALLDYG---ADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHCS------HHHHHHH-T--TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT---CCTTCCCTTSCCGGGGTCC--
T ss_pred hHHHHH------HHHHHHh-C--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCCCHHHHHHhcC
Confidence 999986 8999987 4 3334999999999999999999999999998 667899999999999999865
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=6.9e-32 Score=263.95 Aligned_cols=220 Identities=12% Similarity=0.069 Sum_probs=179.4
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHhcCCC---CcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCc
Q 006942 66 ARQDNHGHTAATLSAAKGNLRALKLLVKYNPD---LTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGAN 142 (624)
Q Consensus 66 ~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~---l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t 142 (624)
+.+|.+|.||||+|+..|+.++++.|++.++. .++.+|..|.||||+|+..|+.+++++|++.+++.+. ++..|.|
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t 80 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNT 80 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCC
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCC
Confidence 35789999999999999999999999998653 4788999999999999999999999999999999888 8999999
Q ss_pred HHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCC
Q 006942 143 VLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHD 222 (624)
Q Consensus 143 ~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 222 (624)
|||+|+..|+.++++.|++.+.+.....
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~---------------------------------------------------- 108 (236)
T 1ikn_D 81 PLHLACEQGCLASVGVLTQSCTTPHLHS---------------------------------------------------- 108 (236)
T ss_dssp HHHHHHHHTCHHHHHHHHHSTTTTSSSC----------------------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhHHH----------------------------------------------------
Confidence 9999999999999999998765320000
Q ss_pred CCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhccc
Q 006942 223 LDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVW 302 (624)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~ 302 (624)
.
T Consensus 109 ------------------------------------------------------------------~------------- 109 (236)
T 1ikn_D 109 ------------------------------------------------------------------I------------- 109 (236)
T ss_dssp ------------------------------------------------------------------G-------------
T ss_pred ------------------------------------------------------------------H-------------
Confidence 0
Q ss_pred ccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCC-CCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCC
Q 006942 303 TNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQ-DGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAG 381 (624)
Q Consensus 303 ~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~G 381 (624)
....+..|.||||+|+..|+.+++++|+++ ++++...|. .|+||||+|+..|+.+++++|++.+ ..++.+|..|
T Consensus 110 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g 184 (236)
T 1ikn_D 110 -LKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG---ADVNRVTYQG 184 (236)
T ss_dssp -GGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT---CCSCCCCTTC
T ss_pred -hhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCcccCCC
Confidence 001566789999999999999999999999 999887765 9999999999999999999999998 5677999999
Q ss_pred CchhhhhhhcCCCCCccchHHHhHHHHhHHHHHHhhcCc---ccccccCCCCCChhhhhhH
Q 006942 382 NNILHLAGRLVPSSEVAGAALQMQRELQWFKAIENLVHP---FFREATNDLKQTPREVFTE 439 (624)
Q Consensus 382 nTpLHlAa~~~~~~~~~gaalq~~~~l~~~~~v~~~~~~---~~~~~~N~~G~Tp~dl~~~ 439 (624)
+||||+|+..++.+ .++.++.. .....+|.+|+||.|...+
T Consensus 185 ~tpl~~A~~~~~~~-----------------~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 185 YSPYQLTWGRPSTR-----------------IQQQLGQLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp CCGGGGCTTSSCHH-----------------HHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred CCHHHHHHccCchH-----------------HHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence 99999999998853 12222222 2356889999999987543
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=5.1e-30 Score=249.82 Aligned_cols=197 Identities=18% Similarity=0.182 Sum_probs=166.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhc-CCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCC-----ccccCCCCCcHH
Q 006942 71 HGHTAATLSAAKGNLRALKLLVKY-NPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGV-----DIYSGKDGANVL 144 (624)
Q Consensus 71 ~G~TpLh~Aa~~g~~~iv~~Ll~~-~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~-----~~~~~~~G~t~L 144 (624)
.|+||||+|+..|+.++++.|++. +.+ ++.+|..|.||||+|+..|+.+++++|++.+++. .. .+.+|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~~g~t~L 79 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTS-ELYEGQTAL 79 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCS-TTTTTCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccc-cCCCCcCHH
Confidence 589999999999999999999998 555 8899999999999999999999999999999875 33 678999999
Q ss_pred HHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCC
Q 006942 145 SFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLD 224 (624)
Q Consensus 145 h~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 224 (624)
|+|+..|+.++++.|++.+.+... .+.. +.++. .
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~--~~~~~---~---------------------------------------- 113 (232)
T 2rfa_A 80 HIAVINQNVNLVRALLARGASVSA-RATG--SVFHY---R---------------------------------------- 113 (232)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTC-CCCS--GGGSC---C----------------------------------------
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCc-ccCC--cceee---c----------------------------------------
Confidence 999999999999999998776522 1111 10000 0
Q ss_pred CcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhccccc
Q 006942 225 GDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTN 304 (624)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~ 304 (624)
.
T Consensus 114 -------------------------------------------------------------------------------~ 114 (232)
T 2rfa_A 114 -------------------------------------------------------------------------------P 114 (232)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred ccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHH----HHHhcCC-cc--ccccccc
Q 006942 305 FQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVF----NLIQGVN-FT--TFLFSSR 377 (624)
Q Consensus 305 ~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv----~~Ll~~~-~~--~~~vn~~ 377 (624)
...+..|.||||+|+..|+.++++.|+++ ++++...|..|+||||+|+.+++.+++ ++|++.+ +. ..+.+.+
T Consensus 115 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~ 193 (232)
T 2rfa_A 115 HNLIYYGEHPLSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVP 193 (232)
T ss_dssp TCSCCCCSSHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCC
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccC
Confidence 11566889999999999999999999999 999887799999999999999999988 8999888 22 1233789
Q ss_pred cCCCCchhhhhhhcCCCC
Q 006942 378 DKAGNNILHLAGRLVPSS 395 (624)
Q Consensus 378 D~~GnTpLHlAa~~~~~~ 395 (624)
|.+|+||||+|++.|+.+
T Consensus 194 ~~~g~tpl~~A~~~g~~~ 211 (232)
T 2rfa_A 194 NNQGLTPFKLAGVEGNIV 211 (232)
T ss_dssp CTTSCCHHHHHHHHTCHH
T ss_pred CCCCCCHHHHHHHcCCHH
Confidence 999999999999999854
No 44
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=7.4e-30 Score=257.02 Aligned_cols=196 Identities=16% Similarity=0.079 Sum_probs=169.4
Q ss_pred hHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHh
Q 006942 49 AICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV 128 (624)
Q Consensus 49 ~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~ 128 (624)
..+++++|.+. +++.+|.+|.||||+|+..|+.++|++|++++++ ++.+ +|.||||+|+..|+.+++++|++.
T Consensus 12 ~~~v~~lL~~~----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 12 SKQLKSFLSSK----DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL--ENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHHHHHST----TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC--TTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHHHHhC----CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC--CCCCHHHHHHHcCCHHHHHHHHHC
Confidence 45555555543 4789999999999999999999999999999887 5555 599999999999999999999999
Q ss_pred cCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhcccccc
Q 006942 129 THGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVE 208 (624)
Q Consensus 129 ~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~ 208 (624)
+++.+. ++..|.||||+|+..|+.++++.|++.+.++. .
T Consensus 85 ga~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~--------------------------------------- 123 (285)
T 3kea_A 85 GLDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-F--------------------------------------- 123 (285)
T ss_dssp TCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-G---------------------------------------
T ss_pred CCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-c---------------------------------------
Confidence 999888 89999999999999999999999998855421 0
Q ss_pred ccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhh
Q 006942 209 KELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMR 288 (624)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 288 (624)
T Consensus 124 -------------------------------------------------------------------------------- 123 (285)
T 3kea_A 124 -------------------------------------------------------------------------------- 123 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcccccccCCccc-cHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcC
Q 006942 289 TVEIVRIICEGVVWTNFQNSAQL-SVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGV 367 (624)
Q Consensus 289 ~~~lL~~l~~~~~~~~~~~~~~g-~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ 367 (624)
.+..| .||||+|+..|+.+++++|+++ +++... ...|+||||+|+.+|+.+++++|++.
T Consensus 124 ------------------~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 124 ------------------YGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPSTFD-LAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp ------------------CSSSGGGSHHHHHHHTTCHHHHHHHHTT-SCTTCC-CSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------cCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCcccc-ccCCccHHHHHHHcChHHHHHHHHHc
Confidence 34455 7899999999999999999999 887632 23899999999999999999999999
Q ss_pred CccccccccccCCCCch-hhhhhhcCCCC
Q 006942 368 NFTTFLFSSRDKAGNNI-LHLAGRLVPSS 395 (624)
Q Consensus 368 ~~~~~~vn~~D~~GnTp-LHlAa~~~~~~ 395 (624)
+ ..+|.+|..|+|| ||+|++.++.+
T Consensus 184 g---ad~n~~~~~g~t~~L~~A~~~~~~~ 209 (285)
T 3kea_A 184 M---TSTNTNNSLLFIPDIKLAIDNKDIE 209 (285)
T ss_dssp H---HHTCTTCCCBCCTTHHHHHHHTCHH
T ss_pred C---CCCCcccCCCCChHHHHHHHcCCHH
Confidence 8 5677999999998 99999999854
No 45
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=3e-30 Score=255.51 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=121.5
Q ss_pred CCCchHHHHHHhhhhhcCCcchHH----HHHHHHHccCchhhcc----CCCCCChHHHHHHHc---CCHHHHHHHHhcCC
Q 006942 28 PGSMTIFHMIVELLIDAESDEAIC----LLDKLASKVDPETLAR----QDNHGHTAATLSAAK---GNLRALKLLVKYNP 96 (624)
Q Consensus 28 ~g~~T~Lh~Aa~~~~~~g~~~~~~----iv~~Ll~~~~~~~~~~----~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~~~ 96 (624)
.| +||||.||. .| +.+ ++++|++.+ .+++. +|.+|.||||+|+.. |+.++|++|++.++
T Consensus 1 ~G-~t~L~~A~~----~g---~~~~v~~ll~~l~~~g--~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 1 FD-RDRLFSVVS----RG---VPEELTGLLEYLRWNS--KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp CC-HHHHHHHHH----HT---CGGGGTTHHHHHHHHT--CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH
T ss_pred CC-ccHHHHHHH----cC---CHHHHHHHHHHHHHcC--CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCC
Confidence 36 999999999 99 987 566676776 66777 899999999999999 99999999999965
Q ss_pred CCc----------ccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCC-------------CCcHHHHHHHhCcH
Q 006942 97 DLT----------NIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKD-------------GANVLSFLIAANLY 153 (624)
Q Consensus 97 ~l~----------~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~-------------G~t~Lh~A~~~~~~ 153 (624)
+.. ..+|..|.||||+|+..|+.+++++|++.+++.+. ++.. |.||||+|+..|+.
T Consensus 71 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~ 149 (256)
T 2etb_A 71 DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL-RACGRFFQKHQGTCFYFGELPLSLAACTKQW 149 (256)
T ss_dssp HTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCH
T ss_pred cccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-ccccccccccccccccCCCCHHHHHHHcCCH
Confidence 421 12457799999999999999999999999999887 6665 99999999999999
Q ss_pred HHHHHHHH---hCCCCCcccCCCCCCHHHHHHc
Q 006942 154 DVALDLLK---RHPTIGRDSIDSRRIILNTLAQ 183 (624)
Q Consensus 154 ~~v~~Ll~---~~~~l~~~~d~~G~TpLh~Aa~ 183 (624)
++++.|++ .+.++ +.+|.+|+||||+|+.
T Consensus 150 ~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~ 181 (256)
T 2etb_A 150 DVVTYLLENPHQPASL-EATDSLGNTVLHALVM 181 (256)
T ss_dssp HHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHH
T ss_pred HHHHHHHhccccCCCc-CccCCCCCCHHHHHHH
Confidence 99999999 55543 5667777777777775
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=5.2e-29 Score=236.90 Aligned_cols=115 Identities=12% Similarity=0.036 Sum_probs=100.2
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 006942 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLI 148 (624)
Q Consensus 69 d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~ 148 (624)
+..+.||||.|+..|+.+.++.|++.++..++.+|..|.||||+|+..|+.+++++|++.+++.+. ++..|.||||+|+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~ 80 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL-QNSISDSPYLYAG 80 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHH
Confidence 456889999999999999999999998855889999999999999999999999999999999988 8999999999999
Q ss_pred HhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcC
Q 006942 149 AANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQK 184 (624)
Q Consensus 149 ~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~ 184 (624)
..|+.++++.|++..+...+..|..|.||||+|+..
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~ 116 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHT
T ss_pred HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHc
Confidence 999999999999776654455555666666665544
No 47
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=1.6e-30 Score=267.23 Aligned_cols=230 Identities=17% Similarity=0.120 Sum_probs=171.6
Q ss_pred ccCCCHHHHHHHHHcC--ccc--c-ccc----------cCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhc
Q 006942 2 IEKNDWQGVEDFVTNH--PDA--L-TAK----------IVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLA 66 (624)
Q Consensus 2 a~~G~~~~v~~ll~~~--~~~--~-~~~----------~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~ 66 (624)
+..|+.+.++.++++. +.. + .+. ..... .+.+|+|+. .+ ..++++.|++.+ .+++
T Consensus 55 ~~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~a~~----~~---~~~~~~~l~~~g--~dvn 124 (327)
T 1sw6_A 55 NDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSN-QQQQHVSFD----SL---LQEVNDAFPNTQ--LNLN 124 (327)
T ss_dssp CCHHHHHHHHHHHHHHHC--------------------------------CHH----HH---HHHHHHHCTTSC--CCSC
T ss_pred ccCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCc-cchhHHHHH----hh---HHHHHHHHHhcC--CCcc
Confidence 3457889999999874 221 0 000 01111 334688888 88 999999999986 7888
Q ss_pred c-CCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCC---HHHHHHHHHhc-CCCccccCCCCC
Q 006942 67 R-QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGH---KDTFHYLLEVT-HGVDIYSGKDGA 141 (624)
Q Consensus 67 ~-~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~---~~iv~~Ll~~~-~~~~~~~~~~G~ 141 (624)
. +|.+|.||||+||..|+.++|++|++++++ ++.+|..|.||||+|+..|+ .++++.|++.+ ++.+. ++..|+
T Consensus 125 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~-~d~~g~ 202 (327)
T 1sw6_A 125 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL-EDSMNR 202 (327)
T ss_dssp SCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE-ECTTCC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC-CCCCCC
Confidence 8 899999999999999999999999999998 78999999999999999999 78888888887 55666 899999
Q ss_pred cHHHHHHH----hCcHHHHHHHHHhC-------------------CCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhh
Q 006942 142 NVLSFLIA----ANLYDVALDLLKRH-------------------PTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQ 198 (624)
Q Consensus 142 t~Lh~A~~----~~~~~~v~~Ll~~~-------------------~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~ 198 (624)
||||+|+. .|+.++++.|++.. ....+.+|..|.||||.|+.
T Consensus 203 tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~--------------- 267 (327)
T 1sw6_A 203 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD--------------- 267 (327)
T ss_dssp CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS---------------
T ss_pred CHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH---------------
Confidence 99999999 89999999999873 22346678899999998872
Q ss_pred hhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccc
Q 006942 199 RLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKG 278 (624)
Q Consensus 199 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 278 (624)
T Consensus 268 -------------------------------------------------------------------------------- 267 (327)
T 1sw6_A 268 -------------------------------------------------------------------------------- 267 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcC
Q 006942 279 IHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYR 356 (624)
Q Consensus 279 i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~ 356 (624)
+++|... .+ + ..+..|+||||+|+..|+.++|++|+++ |+++...|.+|+||||+|+++|
T Consensus 268 -----------~~~Ll~~--~~---n-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 268 -----------LKWIIAN--ML---N-AQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp -----------HHHHHHH--TT---T-CCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTCC--
T ss_pred -----------HHHHHHh--CC---C-CCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcC
Confidence 1111111 11 2 2678899999999999999999999999 9998877999999999998764
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=1.8e-30 Score=259.76 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=125.0
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccC--chhhc----cCCCCCChHHHHHHHc---CCHHHHHHHHhcCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVD--PETLA----RQDNHGHTAATLSAAK---GNLRALKLLVKYNP 96 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~--~~~~~----~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~~~ 96 (624)
+..| +||||.||+ .| +.++|+.|++.+. ..+++ .+|..|.||||+||.. |+.++|++|++.++
T Consensus 10 d~~g-~t~L~~A~~----~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga 81 (273)
T 2pnn_A 10 RLYD-RRSIFDAVA----QS---NCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR 81 (273)
T ss_dssp -CCC-HHHHHHHHH----TT---CSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred Cccc-chHHHHHHH----cC---CHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence 8889 999999999 99 9999999998641 12232 4588999999999987 99999999999864
Q ss_pred CC----------cccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCC--------------CCCcHHHHHHHhCc
Q 006942 97 DL----------TNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGK--------------DGANVLSFLIAANL 152 (624)
Q Consensus 97 ~l----------~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~--------------~G~t~Lh~A~~~~~ 152 (624)
+. ...+|..|.||||+|+..|+.+++++|++.+++.+. .+. .|.||||+|+..|+
T Consensus 82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~ 160 (273)
T 2pnn_A 82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA-AANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160 (273)
T ss_dssp HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC
T ss_pred cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cccccccccccccccccCCCCHHHHHHHcCC
Confidence 31 123677899999999999999999999999998887 665 79999999999999
Q ss_pred HHHHHHHHH---hCCCCCcccCCCCCCHHHHHHcC
Q 006942 153 YDVALDLLK---RHPTIGRDSIDSRRIILNTLAQK 184 (624)
Q Consensus 153 ~~~v~~Ll~---~~~~l~~~~d~~G~TpLh~Aa~~ 184 (624)
.+++++|++ .+.+ .+.+|.+|+||||+|+..
T Consensus 161 ~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~ 194 (273)
T 2pnn_A 161 LAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEV 194 (273)
T ss_dssp HHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHc
Confidence 999999999 5554 366788888888888864
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=2.1e-28 Score=225.61 Aligned_cols=124 Identities=22% Similarity=0.301 Sum_probs=117.9
Q ss_pred hHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHH
Q 006942 32 TIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVH 111 (624)
Q Consensus 32 T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh 111 (624)
++|+.||+ .| +.++|+.|++.| ++++.+|.+|.||||+|+..|+.++++.|++++++ ++.+|.+|.||||
T Consensus 6 ~~L~~Aa~----~G---~~~~v~~Ll~~G--advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh 75 (169)
T 4gpm_A 6 KRLIEAAE----NG---NKDRVKDLIENG--ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLH 75 (169)
T ss_dssp HHHHHHHH----TT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred HHHHHHHH----cC---CHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHH
Confidence 68999999 99 999999999997 78899999999999999999999999999999998 8899999999999
Q ss_pred HHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCC
Q 006942 112 DAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTI 166 (624)
Q Consensus 112 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l 166 (624)
+|+..|+.+++++|++.+++++. +|.+|+||||+|+..|+.++++.|++.+.++
T Consensus 76 ~A~~~g~~~~v~~Ll~~gadvn~-~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~ 129 (169)
T 4gpm_A 76 HAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLISKGADV 129 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 99999999999999999999988 8999999999999999999999999986653
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=3.1e-29 Score=248.24 Aligned_cols=195 Identities=13% Similarity=0.039 Sum_probs=161.6
Q ss_pred CCChHHHHHHHcCCHH----HHHHHHhcCCCCccc----CCCCCChHHHHHHHc---CCHHHHHHHHHhcCCCccc----
Q 006942 71 HGHTAATLSAAKGNLR----ALKLLVKYNPDLTNI----RHGEGFLPVHDAALY---GHKDTFHYLLEVTHGVDIY---- 135 (624)
Q Consensus 71 ~G~TpLh~Aa~~g~~~----iv~~Ll~~~~~l~~~----~n~~G~TPLh~Aa~~---g~~~iv~~Ll~~~~~~~~~---- 135 (624)
.|+||||.||..|+.+ ++++|++.+.+ ++. +|..|.||||+|+.. |+.+++++|++.+++.+..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 4889999999999997 56777778887 555 899999999999999 9999999999998765421
Q ss_pred ------cCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccc
Q 006942 136 ------SGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEK 209 (624)
Q Consensus 136 ------~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~ 209 (624)
.|..|.||||+|+..|+.++++.|++.+.++ +.+|..+.++.
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~------------------------------- 127 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQK------------------------------- 127 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSC-------------------------------
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Ccccccccccc-------------------------------
Confidence 3478999999999999999999999987765 33333221100
Q ss_pred cccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhH
Q 006942 210 ELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRT 289 (624)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 289 (624)
T Consensus 128 -------------------------------------------------------------------------------- 127 (256)
T 2etb_A 128 -------------------------------------------------------------------------------- 127 (256)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHH---ccCCCceecCCCCCcHHHHHHH--cCChh-----
Q 006942 290 VEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIM---AYDSSSNWSNQDGHTIFDHAVL--YRREK----- 359 (624)
Q Consensus 290 ~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~---~~~~d~~~~d~~G~T~Lh~A~~--~~~~~----- 359 (624)
. ....+..|.||||+|+..|+.+++++|++ . +.++...|..|+||||+|+. +++.+
T Consensus 128 -----------~--~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~-ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~ 193 (256)
T 2etb_A 128 -----------H--QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ-PASLEATDSLGNTVLHALVMIADNSPENSALV 193 (256)
T ss_dssp -----------C--SSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC-CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH
T ss_pred -----------c--ccccccCCCCHHHHHHHcCCHHHHHHHHhcccc-CCCcCccCCCCCCHHHHHHHcccCCchhhHHH
Confidence 0 00134568999999999999999999999 8 88888779999999999999 88888
Q ss_pred --HHHHHhcCCcccccc-------ccccCCCCchhhhhhhcCCCC
Q 006942 360 --VFNLIQGVNFTTFLF-------SSRDKAGNNILHLAGRLVPSS 395 (624)
Q Consensus 360 --iv~~Ll~~~~~~~~v-------n~~D~~GnTpLHlAa~~~~~~ 395 (624)
++++|++.+ ..+ +.+|.+|+||||+|++.|+.+
T Consensus 194 ~~iv~~Ll~~g---a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~ 235 (256)
T 2etb_A 194 IHMYDGLLQMG---ARLCPTVQLEEISNHQGLTPLKLAAKEGKIE 235 (256)
T ss_dssp HHHHHHHHHHH---HHHSTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHHcC---CCcccccccccccCCCCCCHHHHHHHhCCHH
Confidence 999999998 334 799999999999999999854
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=1.8e-28 Score=226.13 Aligned_cols=152 Identities=26% Similarity=0.320 Sum_probs=140.6
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSA 80 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa 80 (624)
||++|+.+.|+.+++.. .+++.+ |.+| +||||+|+. .| +.++++.|++.+ .+++.+|.+|.||||+||
T Consensus 11 Aa~~G~~~~v~~Ll~~G-advn~~-d~~g-~t~l~~a~~----~~---~~~~~~~ll~~g--ad~~~~d~~g~TpLh~A~ 78 (169)
T 4gpm_A 11 AAENGNKDRVKDLIENG-ADVNAS-DSDG-RTPLHHAAE----NG---HKEVVKLLISKG--ADVNAKDSDGRTPLHHAA 78 (169)
T ss_dssp HHHTTCHHHHHHHHHTT-CCTTCC-CTTS-CCHHHHHHH----TT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHCC-CCCCCc-CCCC-CCHHHHHHH----cC---CHHHHHHHHhcc--cchhhhccCCCCHHHHHH
Confidence 68899999999999875 456666 8999 999999999 99 999999999997 788999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHH
Q 006942 81 AKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLL 160 (624)
Q Consensus 81 ~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll 160 (624)
..|+.++|++|++++++ ++.+|.+|.||||+||..|+.+++++|++.+++.+. +|.+|+||||+|+..|+.++++.|+
T Consensus 79 ~~g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~g~~~iv~~Ll 156 (169)
T 4gpm_A 79 ENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT-SDSDGRTPLDLAREHGNEEVVKLLE 156 (169)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999999999998 889999999999999999999999999999999988 8999999999999999999999999
Q ss_pred HhCCCC
Q 006942 161 KRHPTI 166 (624)
Q Consensus 161 ~~~~~l 166 (624)
+++.++
T Consensus 157 ~~GA~i 162 (169)
T 4gpm_A 157 KQGGWL 162 (169)
T ss_dssp TC----
T ss_pred HCCCCc
Confidence 998865
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=3.3e-29 Score=248.62 Aligned_cols=147 Identities=18% Similarity=0.114 Sum_probs=122.7
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHH----ccCchhhccC----CCCCChHHHHHH---HcCCHHHHHHHHhc
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLAS----KVDPETLARQ----DNHGHTAATLSA---AKGNLRALKLLVKY 94 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~----~~~~~~~~~~----d~~G~TpLh~Aa---~~g~~~iv~~Ll~~ 94 (624)
+..| +|+||.||+ .| +.+.|+.|++ .+ .+++.. |..|.||||+|+ ..|+.++|++|++.
T Consensus 2 ~~~~-~~~L~~A~~----~g---~~~~v~~ll~~l~~~~--~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 2 KVFN-RPILFDIVS----RG---SPDGLEGLLSFLLTHK--KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp CCCC-HHHHHHHHH----HT---CGGGGTTHHHHHHHHT--CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred ccch-HHHHHHHHH----hC---CHHHHHHHHHHHHhcC--CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 5678 999999999 99 9996555555 65 444544 477999999999 78999999999998
Q ss_pred CCC----------CcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC--------------CCCCcHHHHHHHh
Q 006942 95 NPD----------LTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSG--------------KDGANVLSFLIAA 150 (624)
Q Consensus 95 ~~~----------l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~--------------~~G~t~Lh~A~~~ 150 (624)
+++ .....|..|.||||+||..|+.+++++|++.+++.+. .+ ..|.||||+|+..
T Consensus 72 g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 150 (260)
T 3jxi_A 72 AEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA-QARGRFFQPKDEGGYFYFGELPLSLAACT 150 (260)
T ss_dssp HHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCEECCCSSSCCCCSCCSCSSHHHHHHHT
T ss_pred cccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc-cccccccCcccccccccCCCCHHHHHHHc
Confidence 532 1445566899999999999999999999999999887 66 6899999999999
Q ss_pred CcHHHHHHHHH---hCCCCCcccCCCCCCHHHHHHcC
Q 006942 151 NLYDVALDLLK---RHPTIGRDSIDSRRIILNTLAQK 184 (624)
Q Consensus 151 ~~~~~v~~Ll~---~~~~l~~~~d~~G~TpLh~Aa~~ 184 (624)
|+.++++.|++ .+.++ +.+|.+|+||||+|++.
T Consensus 151 g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~ 186 (260)
T 3jxi_A 151 NQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAI 186 (260)
T ss_dssp TCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHh
Confidence 99999999999 55544 66788888888888854
No 53
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=246.14 Aligned_cols=193 Identities=15% Similarity=0.174 Sum_probs=170.1
Q ss_pred CCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCC
Q 006942 28 PGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGF 107 (624)
Q Consensus 28 ~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~ 107 (624)
.+ ++++|.|+. .| +.+.++.+++.+.+..++.+|.+|.||||+||..|+.++|++|++.++..++.+|..|.
T Consensus 75 ~~-~~~l~~a~~----~~---~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~ 146 (276)
T 4hbd_A 75 AC-RSDAHPELV----RR---HLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGY 146 (276)
T ss_dssp HH-STTCCHHHH----HH---HHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSC
T ss_pred Hh-ccCCCHHHH----HH---HHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCC
Confidence 35 788899999 99 99999999988755568999999999999999999999999999999855889999999
Q ss_pred hHHHHHH-----HcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHH
Q 006942 108 LPVHDAA-----LYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLA 182 (624)
Q Consensus 108 TPLh~Aa-----~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa 182 (624)
||||+|+ ..++.+++++|++.+..... .+..|.||||+|+..|+.++++.|++.+.++ +.
T Consensus 147 tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~------------- 211 (276)
T 4hbd_A 147 SPIMLTALATLKTQDDIETVLQLFRLGNINAK-ASQAGQTALMLAVSHGRVDVVKALLACEADV-NV------------- 211 (276)
T ss_dssp CHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TC-------------
T ss_pred CHHHHHHHHHhhhhhhHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CC-------------
Confidence 9999999 67889999999999988777 8889999999999999999999999876543 11
Q ss_pred cCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHH
Q 006942 183 QKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLH 262 (624)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (624)
T Consensus 212 -------------------------------------------------------------------------------- 211 (276)
T 4hbd_A 212 -------------------------------------------------------------------------------- 211 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHH-ccCCCceec
Q 006942 263 RMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIM-AYDSSSNWS 341 (624)
Q Consensus 263 ~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~-~~~~d~~~~ 341 (624)
.+..|.||||+|+..|+.++++.|++ . +.++...
T Consensus 212 --------------------------------------------~d~~G~TpLh~A~~~g~~~iv~~Ll~~~-gad~~~~ 246 (276)
T 4hbd_A 212 --------------------------------------------QDDDGSTALMCACEHGHKEIAGLLLAVP-SCDISLT 246 (276)
T ss_dssp --------------------------------------------CCTTSCCHHHHHHHHTCHHHHHHHHTST-TCCTTCC
T ss_pred --------------------------------------------CCCCCCCHHHHHHHCCCHHHHHHHHhcC-CCCCcCc
Confidence 34566788888888899999999999 6 7777666
Q ss_pred CCCCCcHHHHHHHcCChhHHHHHhcCC
Q 006942 342 NQDGHTIFDHAVLYRREKVFNLIQGVN 368 (624)
Q Consensus 342 d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 368 (624)
|..|+||||+|+.+|+.+++++|+++.
T Consensus 247 d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 247 DRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999999999999999999999999865
No 54
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=1.1e-27 Score=239.37 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=130.1
Q ss_pred CccCCCHHHHHHHHHc---Cccccc---cccCCCCCchHHHHHHhhhhhc---CCcchHHHHHHHHHccCch-----hhc
Q 006942 1 MIEKNDWQGVEDFVTN---HPDALT---AKIVEPGSMTIFHMIVELLIDA---ESDEAICLLDKLASKVDPE-----TLA 66 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~---~~~~~~---~~~~~~g~~T~Lh~Aa~~~~~~---g~~~~~~iv~~Ll~~~~~~-----~~~ 66 (624)
||..|+.+.|+.+++. .+..++ ...+..| +||||+||. . | +.++|++|++.+... .++
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g-~tpL~~A~~----~~~~g---~~~~v~~Ll~~ga~~~~~~~~i~ 91 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETG-KTCLLKAML----NLHNG---QNDTIALLLDVARKTDSLKQFVN 91 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTC-CCHHHHHHH----SCBTT---BCHHHHHHHHHHHHTTCHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCC-CCHHHHHHH----HHhcC---ChHHHHHHHHhhccccchhHHhh
Confidence 6789999999999874 222222 1237789 999999998 7 9 999999999987321 133
Q ss_pred c----CCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCC--------------CCChHHHHHHHcCCHHHHHHHHH-
Q 006942 67 R----QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHG--------------EGFLPVHDAALYGHKDTFHYLLE- 127 (624)
Q Consensus 67 ~----~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~--------------~G~TPLh~Aa~~g~~~iv~~Ll~- 127 (624)
. +|..|.||||+|+..|+.++|++|++++++ ++.++. .|.||||+|+..|+.+++++|++
T Consensus 92 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 170 (273)
T 2pnn_A 92 ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170 (273)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 3 677999999999999999999999999988 677776 79999999999999999999999
Q ss_pred --hcCCCccccCCCCCcHHHHHHHhCc---------HHHHHHHHHhCCC
Q 006942 128 --VTHGVDIYSGKDGANVLSFLIAANL---------YDVALDLLKRHPT 165 (624)
Q Consensus 128 --~~~~~~~~~~~~G~t~Lh~A~~~~~---------~~~v~~Ll~~~~~ 165 (624)
.+.+.+. +|.+|+||||+|+..|+ .++++.|++.+.+
T Consensus 171 ~~~gad~~~-~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~ 218 (273)
T 2pnn_A 171 SWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK 218 (273)
T ss_dssp SSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcee-eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh
Confidence 8888888 89999999999999887 6788888876543
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=5.2e-27 Score=217.36 Aligned_cols=170 Identities=22% Similarity=0.207 Sum_probs=145.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC
Q 006942 72 GHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAAN 151 (624)
Q Consensus 72 G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~ 151 (624)
+.||||.||..|+.++++.|++.++..++.+|..|.||||+|+..|+.+++++|++.+++.+. .+..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI-LAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh-hcccCCCHHHHHHHCC
Confidence 468999999999999999999999988889999999999999999999999999999999888 8999999999999999
Q ss_pred cHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhh
Q 006942 152 LYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFI 231 (624)
Q Consensus 152 ~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (624)
+.++++.|++.+.++ +.
T Consensus 81 ~~~~v~~Ll~~g~~~-~~-------------------------------------------------------------- 97 (172)
T 3v30_A 81 YTDIVGLLLERDVDI-NI-------------------------------------------------------------- 97 (172)
T ss_dssp CHHHHHHHHTTTCCT-TC--------------------------------------------------------------
T ss_pred CHHHHHHHHHcCCCC-CC--------------------------------------------------------------
Confidence 999999999875442 11
Q ss_pred hhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccc
Q 006942 232 VTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQL 311 (624)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g 311 (624)
.+..|
T Consensus 98 ---------------------------------------------------------------------------~~~~g 102 (172)
T 3v30_A 98 ---------------------------------------------------------------------------YDWNG 102 (172)
T ss_dssp ---------------------------------------------------------------------------CCTTS
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 34566
Q ss_pred cHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCCCch
Q 006942 312 SVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAGNNI 384 (624)
Q Consensus 312 ~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~GnTp 384 (624)
.||||+|+..|+.++++.|+++ +++....|..|+||||+|+..++.+++++|++++ ..+..++..|.||
T Consensus 103 ~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~---~~~~~~~~~~~~p 171 (172)
T 3v30_A 103 GTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALGYRKVQQVIENHI---LKLFQSNLVPADP 171 (172)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH---HHHSCC-------
T ss_pred CCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH---HHHhcccCCCCCC
Confidence 7888888888999999999999 9888767999999999999999999999999988 3445788888887
No 56
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=6.9e-27 Score=220.72 Aligned_cols=164 Identities=17% Similarity=0.173 Sum_probs=148.0
Q ss_pred hhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcH
Q 006942 64 TLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANV 143 (624)
Q Consensus 64 ~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~ 143 (624)
.++.+|..|.||||+||..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+++.+. .+..|.||
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~ 104 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-KDFSGKTP 104 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTSCCH
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcH
Confidence 4678899999999999999999999999999887 778999999999999999999999999999999888 89999999
Q ss_pred HHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCC
Q 006942 144 LSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDL 223 (624)
Q Consensus 144 Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 223 (624)
||+|+..|+.++++.|++.+.++ +.
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~~-~~------------------------------------------------------ 129 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGANV-ND------------------------------------------------------ 129 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCS-SC------------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHCCCCC-CC------------------------------------------------------
Confidence 99999999999999999876543 11
Q ss_pred CCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccc
Q 006942 224 DGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWT 303 (624)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~ 303 (624)
T Consensus 130 -------------------------------------------------------------------------------- 129 (192)
T 2rfm_A 130 -------------------------------------------------------------------------------- 129 (192)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCC
Q 006942 304 NFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVN 368 (624)
Q Consensus 304 ~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 368 (624)
.+..|.||||+|+..|+.+++++|+++ ++++...|..|+||||+|+..|+.+++++|++.+
T Consensus 130 ---~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 130 ---RNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp ---CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 345667888888888999999999999 9988777999999999999999999999998764
No 57
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.1e-28 Score=239.74 Aligned_cols=202 Identities=13% Similarity=0.060 Sum_probs=158.6
Q ss_pred HHHHHHccCc-hhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 006942 53 LDKLASKVDP-ETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHG 131 (624)
Q Consensus 53 v~~Ll~~~~~-~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~ 131 (624)
|+.|++.+.+ ...+..+..|.||||.||..|+.++|++|++.+++ ++.+|..|.||||+||..|+.+++++|++.+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 4567776532 23455667788999999999999999999999887 788999999999999999999999999999999
Q ss_pred CccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccc
Q 006942 132 VDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKEL 211 (624)
Q Consensus 132 ~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ 211 (624)
.+. +|..|.||||+|+..|+.++++.|++.+.++....+.+|.||||+|+.
T Consensus 80 ~n~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a---------------------------- 130 (229)
T 2vge_A 80 VNS-PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDP---------------------------- 130 (229)
T ss_dssp TTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCT----------------------------
T ss_pred CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHH----------------------------
Confidence 988 899999999999999999999999998776543333455555555410
Q ss_pred cCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHH
Q 006942 212 VPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVE 291 (624)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 291 (624)
T Consensus 131 -------------------------------------------------------------------------------- 130 (229)
T 2vge_A 131 -------------------------------------------------------------------------------- 130 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccc
Q 006942 292 IVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTT 371 (624)
Q Consensus 292 lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~ 371 (624)
+..|+.+++++|++. +++....|..|.||+|.++..+. .++|++.+ .+
T Consensus 131 ---------------------------~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~~---~~~ll~~g-a~ 178 (229)
T 2vge_A 131 ---------------------------YREGYADCATYLADV-EQSMGLMNSGAVYALWDYSAEFG---DELSFREG-ES 178 (229)
T ss_dssp ---------------------------TSTTHHHHHHHHHHH-HHHTTTSGGGEEEESSCBCCSST---TBCCBCTT-CE
T ss_pred ---------------------------HhcChHHHHHHHHHc-CCCcccccCCchHHHHHHhhccc---cccCcccc-cc
Confidence 455677999999999 88877668899999997655543 35667776 12
Q ss_pred cccccccCCCCchhhhhhhcCCCCC
Q 006942 372 FLFSSRDKAGNNILHLAGRLVPSSE 396 (624)
Q Consensus 372 ~~vn~~D~~GnTpLHlAa~~~~~~~ 396 (624)
..++.+|.+|+||||+|++.|+.++
T Consensus 179 ~~~~~~d~~G~TpL~~A~~~g~~~~ 203 (229)
T 2vge_A 179 VTVLRRDGPEETDWWWAALHGQEGY 203 (229)
T ss_dssp EEEEESSCTTCSSEEEEEETTEEEE
T ss_pred ccccccCCCcccHHHHHHHcCCcce
Confidence 3378999999999999999998764
No 58
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=8.5e-28 Score=238.38 Aligned_cols=155 Identities=21% Similarity=0.217 Sum_probs=129.5
Q ss_pred CccCCCHHHHHHHHH---cCccccccc---cCCCCCchHHHHHH---hhhhhcCCcchHHHHHHHHHccCc---------
Q 006942 1 MIEKNDWQGVEDFVT---NHPDALTAK---IVEPGSMTIFHMIV---ELLIDAESDEAICLLDKLASKVDP--------- 62 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~---~~~~~~~~~---~~~~g~~T~Lh~Aa---~~~~~~g~~~~~~iv~~Ll~~~~~--------- 62 (624)
||..|+.+.++.+++ +.+..++.. .+.+| +||||+|+ + .| +.++|++|++.+..
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g-~t~L~~A~~~~~----~g---~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTG-KTCLPKALLNLS----AG---RNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTC-CCHHHHHHTSCB----TT---BCTHHHHHHHHHHHTTCHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCC-CcHHHHHHHHhh----cC---CHHHHHHHHHhcccccchHhhhc
Confidence 678899998887777 233333332 13779 99999999 7 79 99999999998632
Q ss_pred hhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCC--------------CCCChHHHHHHHcCCHHHHHHHHH-
Q 006942 63 ETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRH--------------GEGFLPVHDAALYGHKDTFHYLLE- 127 (624)
Q Consensus 63 ~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n--------------~~G~TPLh~Aa~~g~~~iv~~Ll~- 127 (624)
..++..|..|.||||+||..|+.++|++|++++++ ++.+| ..|.||||+|+..|+.+++++|++
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 22455666999999999999999999999999988 67777 689999999999999999999999
Q ss_pred --hcCCCccccCCCCCcHHHHHHHhCc---------HHHHHHHHHhCCC
Q 006942 128 --VTHGVDIYSGKDGANVLSFLIAANL---------YDVALDLLKRHPT 165 (624)
Q Consensus 128 --~~~~~~~~~~~~G~t~Lh~A~~~~~---------~~~v~~Ll~~~~~ 165 (624)
.+.+.+. +|.+|+||||+|+..++ .++++.|++.+.+
T Consensus 163 ~~~ga~~~~-~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~ 210 (260)
T 3jxi_A 163 GHKQADLRR-QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK 210 (260)
T ss_dssp SSCCCCTTC-CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcc-cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc
Confidence 8888888 89999999999998877 6888888877543
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=7.5e-27 Score=216.26 Aligned_cols=163 Identities=14% Similarity=0.080 Sum_probs=144.2
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSA 80 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa 80 (624)
||..|+.+.++.++++.+..++.+ +..| .||||+||. .| +.++|++|++.+ .+++.+|..|.||||+|+
T Consensus 9 A~~~g~~~~v~~ll~~~~~~~~~~-~~~g-~t~L~~A~~----~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~ 77 (172)
T 3v30_A 9 LAAQGELDQLKEHLRKGDNLVNKP-DERG-FTPLIWASA----FG---EIETVRFLLEWG--ADPHILAKERESALSLAS 77 (172)
T ss_dssp HHHTTCHHHHHHHHTTCSGGGGCC-CTTS-CCHHHHHHH----TT---CHHHHHHHHHHT--CCTTCCCTTCCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCcccccCC-CCCC-CCHHHHHHH----cC---CHHHHHHHHHcC--CCchhhcccCCCHHHHHH
Confidence 678999999999999988877777 8899 999999999 99 999999999997 678889999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHH
Q 006942 81 AKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLL 160 (624)
Q Consensus 81 ~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll 160 (624)
..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++.+++.+. ++..|.||||+|+..|+.++++.|+
T Consensus 78 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (172)
T 3v30_A 78 TGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT-EADSGYTPMDLAVALGYRKVQQVIE 155 (172)
T ss_dssp HTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 99999999999999888 788999999999999999999999999999999888 8999999999999999999999999
Q ss_pred HhCCCCCcccCCCCCCH
Q 006942 161 KRHPTIGRDSIDSRRII 177 (624)
Q Consensus 161 ~~~~~l~~~~d~~G~Tp 177 (624)
++..++ ...+..|.||
T Consensus 156 ~~~~~~-~~~~~~~~~p 171 (172)
T 3v30_A 156 NHILKL-FQSNLVPADP 171 (172)
T ss_dssp HHHHHH-SCC-------
T ss_pred HHHHHH-hcccCCCCCC
Confidence 987765 3456667766
No 60
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=1.7e-26 Score=211.48 Aligned_cols=127 Identities=24% Similarity=0.279 Sum_probs=118.3
Q ss_pred CCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCC
Q 006942 27 EPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEG 106 (624)
Q Consensus 27 ~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G 106 (624)
+.. .||||.|+. .| +.++++.|++.+ .+++.+|..|.||||+|+. |+.+++++|++++++ ++.+|..|
T Consensus 3 ~~~-~~~L~~A~~----~g---~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g 70 (162)
T 1ihb_A 3 EPW-GNELASAAA----RG---DLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTG 70 (162)
T ss_dssp --C-HHHHHHHHH----HT---CHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred chH-hhHHHHHHH----cC---CHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCC
Confidence 456 899999999 99 999999999986 6788999999999999999 999999999999888 78899999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCC
Q 006942 107 FLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTI 166 (624)
Q Consensus 107 ~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l 166 (624)
.||||+|+..|+.+++++|++.+.+.+. ++.+|.||||+|+..|+.+++++|++.+++.
T Consensus 71 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 129 (162)
T 1ihb_A 71 FAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129 (162)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHccCCC
Confidence 9999999999999999999999999888 8999999999999999999999999987754
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=2.4e-26 Score=217.02 Aligned_cols=149 Identities=16% Similarity=0.124 Sum_probs=131.8
Q ss_pred cccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 006942 21 LTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTN 100 (624)
Q Consensus 21 ~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~ 100 (624)
++.+ |..| +||||+||. .| +.++++.|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++ ++
T Consensus 28 ~n~~-d~~g-~t~L~~A~~----~g---~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~ 95 (192)
T 2rfm_A 28 RNYR-DSYN-RTPLMVACM----LG---MENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VN 95 (192)
T ss_dssp HTCC-CTTC-CCHHHHHHH----HT---CGGGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TT
T ss_pred HhCc-CCCC-CCHHHHHHH----cC---CHHHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CC
Confidence 4445 8899 999999999 99 999999999997 67889999999999999999999999999999988 78
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHH
Q 006942 101 IRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNT 180 (624)
Q Consensus 101 ~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~ 180 (624)
.+|..|.||||+|+..|+.+++++|++.+++.+. ++..|.||||+|+..|+.++++.|++.+.++ ..+|..|.||||+
T Consensus 96 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~ 173 (192)
T 2rfm_A 96 TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-RNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEAS 173 (192)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHH
T ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHH
Confidence 8999999999999999999999999999999988 8999999999999999999999999986654 3344444444444
Q ss_pred HHc
Q 006942 181 LAQ 183 (624)
Q Consensus 181 Aa~ 183 (624)
|+.
T Consensus 174 A~~ 176 (192)
T 2rfm_A 174 ARI 176 (192)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 62
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.6e-29 Score=244.27 Aligned_cols=158 Identities=12% Similarity=0.107 Sum_probs=133.5
Q ss_pred HHHHHcCcc--ccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHH
Q 006942 11 EDFVTNHPD--ALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRAL 88 (624)
Q Consensus 11 ~~ll~~~~~--~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv 88 (624)
+.+|++... ..+.. +.+| .||||.||. .| +.++|+.|++.+ .+++.+|..|.||||+||..|+.+++
T Consensus 2 ~~ll~~~~~~~~~~~~-~~~~-~t~L~~A~~----~g---~~~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v 70 (229)
T 2vge_A 2 RSVLRKAGSPRKARRA-RLNP-LVLLLDAAL----TG---ELEVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSIV 70 (229)
T ss_dssp --------CCCCCCCT-TSCH-HHHHHHHHH----HT---CHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred eehhccCCCCcccccc-ccch-hHHHHHHHH----cC---CHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 456665433 23333 6778 999999999 99 999999999997 67899999999999999999999999
Q ss_pred HHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHHH--HHhCcHHHHHHHHHhCCC
Q 006942 89 KLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSG-KDGANVLSFL--IAANLYDVALDLLKRHPT 165 (624)
Q Consensus 89 ~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~G~t~Lh~A--~~~~~~~~v~~Ll~~~~~ 165 (624)
++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+++.+. .+ .+|.||||+| +..|+.+++++|++.+.+
T Consensus 71 ~~Ll~~ga~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~ 148 (229)
T 2vge_A 71 DFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA-TTLSDGATAFEKCDPYREGYADCATYLADVEQS 148 (229)
T ss_dssp HHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC
Confidence 999999988 889999999999999999999999999999999887 54 7999999999 999999999999999876
Q ss_pred CCcccCCCCCCHHHHHH
Q 006942 166 IGRDSIDSRRIILNTLA 182 (624)
Q Consensus 166 l~~~~d~~G~TpLh~Aa 182 (624)
+ +.+|..|.||++.++
T Consensus 149 ~-~~~~~~~~~~l~~~~ 164 (229)
T 2vge_A 149 M-GLMNSGAVYALWDYS 164 (229)
T ss_dssp T-TTSGGGEEEESSCBC
T ss_pred c-ccccCCchHHHHHHh
Confidence 5 456777888877543
No 63
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=4.4e-26 Score=209.96 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=103.3
Q ss_pred CCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCC
Q 006942 28 PGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGF 107 (624)
Q Consensus 28 ~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~ 107 (624)
+| .||||.||. .| +.++++.|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|.
T Consensus 2 ~~-~t~L~~A~~----~g---~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~ 70 (167)
T 3v31_A 2 AN-SLSVHQLAA----QG---EMLYLATRIEQE--NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRE 70 (167)
T ss_dssp TT-CCCHHHHHH----TT---CHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCC
T ss_pred CC-cchHHHHHH----CC---CHHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCC
Confidence 35 788888888 88 888888888775 55777788888888888888888888888887766 667777788
Q ss_pred hHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHH
Q 006942 108 LPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLA 182 (624)
Q Consensus 108 TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa 182 (624)
||||+|+..|+.+++++|++.+.+.+. ++..|.||||+|+..|+.++++.|++.+.++ ..+|..|.||||+|+
T Consensus 71 t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~ 143 (167)
T 3v31_A 71 SALSLACSKGYTDIVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAV 143 (167)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 888888888888888888887777766 6777777777777777777777777765443 233334444444333
No 64
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=8.3e-26 Score=208.10 Aligned_cols=157 Identities=19% Similarity=0.183 Sum_probs=142.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh
Q 006942 71 HGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAA 150 (624)
Q Consensus 71 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~ 150 (624)
.|.||||.||..|+.++++.|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+.+.+. .+..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHc
Confidence 588999999999999999999999877 888999999999999999999999999999998888 899999999999999
Q ss_pred CcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhh
Q 006942 151 NLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESF 230 (624)
Q Consensus 151 ~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (624)
|+.++++.|++.+.++ +.
T Consensus 80 ~~~~~v~~Ll~~g~~~-~~------------------------------------------------------------- 97 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDV-NE------------------------------------------------------------- 97 (167)
T ss_dssp TCHHHHHHHHHHTCCT-TC-------------------------------------------------------------
T ss_pred CCHHHHHHHHHCCCCC-Cc-------------------------------------------------------------
Confidence 9999999999886543 11
Q ss_pred hhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCcc
Q 006942 231 IVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQ 310 (624)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~ 310 (624)
.+..
T Consensus 98 ----------------------------------------------------------------------------~~~~ 101 (167)
T 3v31_A 98 ----------------------------------------------------------------------------YDWN 101 (167)
T ss_dssp ----------------------------------------------------------------------------CCTT
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 3455
Q ss_pred ccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCC
Q 006942 311 LSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVN 368 (624)
Q Consensus 311 g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 368 (624)
|.||||+|+..|+.++++.|+++ +++....|..|+||||+|+..|+.+++++|++++
T Consensus 102 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 102 GGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 67888888888999999999999 9888766999999999999999999999999876
No 65
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=6.3e-26 Score=207.67 Aligned_cols=156 Identities=24% Similarity=0.271 Sum_probs=139.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh
Q 006942 71 HGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAA 150 (624)
Q Consensus 71 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~ 150 (624)
...||||.|+..|+.++++.|++++++ ++.+|..|.||||+|+. |+.+++++|++.+.+.+. ++..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-KDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHc
Confidence 456999999999999999999999888 78899999999999999 999999999999999888 899999999999999
Q ss_pred CcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhh
Q 006942 151 NLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESF 230 (624)
Q Consensus 151 ~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (624)
|+.++++.|++.+.++ +.
T Consensus 81 ~~~~~v~~Ll~~g~~~-~~------------------------------------------------------------- 98 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADV-NI------------------------------------------------------------- 98 (162)
T ss_dssp TCHHHHHHHHHTTCCT-TC-------------------------------------------------------------
T ss_pred CCHHHHHHHHHcCCCC-CC-------------------------------------------------------------
Confidence 9999999999876543 11
Q ss_pred hhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCcc
Q 006942 231 IVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQ 310 (624)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~ 310 (624)
.+..
T Consensus 99 ----------------------------------------------------------------------------~~~~ 102 (162)
T 1ihb_A 99 ----------------------------------------------------------------------------EDNE 102 (162)
T ss_dssp ----------------------------------------------------------------------------CCTT
T ss_pred ----------------------------------------------------------------------------cCCC
Confidence 3445
Q ss_pred ccHHHHHHHHcCCHHHHHHHHHccCCCceec-CCCCCcHHHHHHHcCChhHHHHHhcCC
Q 006942 311 LSVAMLAAAILGIPEVVNEFIMAYDSSSNWS-NQDGHTIFDHAVLYRREKVFNLIQGVN 368 (624)
Q Consensus 311 g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~-d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 368 (624)
|.||||+|+..|+.+++++|+++ +++.... |..|+||||+|+.+++.+++++|+++|
T Consensus 103 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 103 GNLPLHLAAKEGHLRVVEFLVKH-TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHc-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 67888888888899999999999 9886556 999999999999999999999999887
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=1.5e-25 Score=207.04 Aligned_cols=160 Identities=21% Similarity=0.293 Sum_probs=141.3
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHH
Q 006942 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFL 147 (624)
Q Consensus 68 ~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A 147 (624)
....+.||||.||+.|+.++|++|++++++ ++.+|..|.||||+|+..|+.+++++|++.+.+.+. .+..|.||||+|
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A 87 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-VDHAGMTPLRLA 87 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHH
Confidence 456678999999999999999999999988 788999999999999999999999999999998888 899999999999
Q ss_pred HHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcc
Q 006942 148 IAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDI 227 (624)
Q Consensus 148 ~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (624)
+..|+.+++++|++.+.++ +.
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~-~~---------------------------------------------------------- 108 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADV-NA---------------------------------------------------------- 108 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TC----------------------------------------------------------
T ss_pred HHcCCHHHHHHHHHcCCCC-CC----------------------------------------------------------
Confidence 9999999999999875543 11
Q ss_pred hhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccC
Q 006942 228 ESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQN 307 (624)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~ 307 (624)
.
T Consensus 109 -------------------------------------------------------------------------------~ 109 (169)
T 2y1l_E 109 -------------------------------------------------------------------------------N 109 (169)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 3
Q ss_pred CccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCC
Q 006942 308 SAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVN 368 (624)
Q Consensus 308 ~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 368 (624)
+..|.||||+|+..|+.+++++|+++ +++....|..|+||||+|+.+++.+++++|++.|
T Consensus 110 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 110 DMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 45567888888888999999999999 9988766999999999999999999999999865
No 67
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=1.9e-25 Score=206.19 Aligned_cols=144 Identities=19% Similarity=0.209 Sum_probs=126.7
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGE 105 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~ 105 (624)
...+ .|+||.||+ .| +.++|++|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++ ++.+|..
T Consensus 11 ~~~~-~~~l~~A~~----~g---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 79 (169)
T 2y1l_E 11 GSDL-GKKLLEAAR----AG---RDDEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHA 79 (169)
T ss_dssp --CH-HHHHHHHHH----HT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CCcc-cchHHHHHH----cC---CHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCC
Confidence 4566 899999999 99 999999999997 67889999999999999999999999999999888 7889999
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHH
Q 006942 106 GFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLA 182 (624)
Q Consensus 106 G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa 182 (624)
|.||||+|+..|+.+++++|++.+++.+. ++.+|.||||+|+..|+.+++++|++++.++ +.+|..|.||||+|+
T Consensus 80 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~ 154 (169)
T 2y1l_E 80 GMTPLRLAALFGHLEIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISI 154 (169)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 99999999999999999999999999888 8999999999999999999999999986654 333444444444444
No 68
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=3.8e-26 Score=228.70 Aligned_cols=149 Identities=16% Similarity=0.176 Sum_probs=132.0
Q ss_pred ccCCCHHHHHHHHHcCcc-ccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHH
Q 006942 2 IEKNDWQGVEDFVTNHPD-ALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSA 80 (624)
Q Consensus 2 a~~G~~~~v~~ll~~~~~-~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa 80 (624)
+..|+.+.++.++..... .++.+ |.+| +||||+||. .| +.++|+.|++.+ ..+++.+|..|.||||+|+
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~n~~-d~~g-~T~Lh~A~~----~g---~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 84 LVRRHLVTFRAMSARLLDYVVNIA-DSNG-NTALHYSVS----HA---NFPVVQQLLDSG-VCKVDKQNRAGYSPIMLTA 153 (276)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHTCC-CTTS-CCHHHHHHH----TT---CHHHHHHHHHTS-CCCTTCCCTTSCCHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHhhcCcCC-CCCC-CCHHHHHHH----CC---CHHHHHHHHHCC-CCcCCCCCCCCCCHHHHHH
Confidence 445667777777665333 25555 8999 999999999 99 999999999997 3478999999999999999
Q ss_pred -----HcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHH
Q 006942 81 -----AKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDV 155 (624)
Q Consensus 81 -----~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~ 155 (624)
..|+.++++.|++.+.. ....|..|.||||+|+..|+.+++++|++.+++++. +|.+|.||||+|+..|+.++
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~-~d~~G~TpLh~A~~~g~~~i 231 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV-QDDDGSTALMCACEHGHKEI 231 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHH
T ss_pred HHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHCCCHHH
Confidence 67999999999999876 677889999999999999999999999999999998 89999999999999999999
Q ss_pred HHHHHHh
Q 006942 156 ALDLLKR 162 (624)
Q Consensus 156 v~~Ll~~ 162 (624)
++.|++.
T Consensus 232 v~~Ll~~ 238 (276)
T 4hbd_A 232 AGLLLAV 238 (276)
T ss_dssp HHHHHTS
T ss_pred HHHHHhc
Confidence 9999983
No 69
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=5.6e-28 Score=251.19 Aligned_cols=144 Identities=15% Similarity=0.068 Sum_probs=117.1
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCch-hhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCC--cccC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPE-TLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDL--TNIR 102 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~-~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l--~~~~ 102 (624)
+.++ +||||+||+ .| +.++|++|++.+.+. ..+..|..|.||||+||..|+.++|++|++++++. .+..
T Consensus 89 g~~~-~T~Lh~Aa~----~G---~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~ 160 (376)
T 2aja_A 89 GIKS-EVICFVAAI----TG---CSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ 160 (376)
T ss_dssp TCCH-HHHHHHHHH----HC---CHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS
T ss_pred CCCc-CCHHHHHHH----cC---CHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccC
Confidence 5677 899999999 99 999999999997432 12345667889999999999999999999999752 1233
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHH-HhCcHHHHHHHHHhCCCCCcccCCCCCCHHHH
Q 006942 103 HGEGFLPVHDAALYGHKDTFHYLLEVTHGVDI-YSGKDGANVLSFLI-AANLYDVALDLLKRHPTIGRDSIDSRRIILNT 180 (624)
Q Consensus 103 n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~-~~~~~G~t~Lh~A~-~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~ 180 (624)
+.+ .||||+||..|+.++|++|++++++.+. ..+.+|.||||+|+ .+|+.+++++|++.+. .|.||||+
T Consensus 161 ~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~ 231 (376)
T 2aja_A 161 AEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIH 231 (376)
T ss_dssp HHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHC
T ss_pred CCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHH
Confidence 333 9999999999999999999999987543 14677999999999 9999999999998432 38899999
Q ss_pred HHcCCC
Q 006942 181 LAQKPY 186 (624)
Q Consensus 181 Aa~~~~ 186 (624)
|++.++
T Consensus 232 Aa~~g~ 237 (376)
T 2aja_A 232 EFEYGE 237 (376)
T ss_dssp TTTTTT
T ss_pred HHHCCC
Confidence 998753
No 70
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=3.4e-25 Score=201.49 Aligned_cols=140 Identities=19% Similarity=0.171 Sum_probs=123.9
Q ss_pred chHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHH
Q 006942 31 MTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPV 110 (624)
Q Consensus 31 ~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPL 110 (624)
.||||.||. .| +.++++.|++. .+.+++.+|..|.||||+ |..|+.+++++|++++++ ++.+|..|.|||
T Consensus 3 ~~~L~~A~~----~g---~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L 72 (156)
T 1bd8_A 3 GDRLSGAAA----RG---DVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPV 72 (156)
T ss_dssp HHHHHHHHH----HT---CHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred chHHHHHHH----hC---CHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHH
Confidence 799999999 99 99999999998 456889999999999999 999999999999999988 789999999999
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHc
Q 006942 111 HDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQ 183 (624)
Q Consensus 111 h~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~ 183 (624)
|+|+..|+.+++++|++.+.+.+. +|.+|.||||+|+..|+.++++.|++. .+. +.+|.+|.||||+|+.
T Consensus 73 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~ 142 (156)
T 1bd8_A 73 HDAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQ 142 (156)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHH
Confidence 999999999999999999999888 899999999999999999999999987 432 3444444444444443
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=1.6e-25 Score=205.72 Aligned_cols=161 Identities=20% Similarity=0.200 Sum_probs=140.4
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHH
Q 006942 67 RQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSF 146 (624)
Q Consensus 67 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~ 146 (624)
..|.+|.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++.+.+.+. ++.+|.||||+
T Consensus 3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~ 81 (165)
T 3twr_A 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHN 81 (165)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHH
T ss_pred CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCc-cCCCCCCHHHH
Confidence 35778999999999999999999999987766788899999999999999999999999999999888 89999999999
Q ss_pred HHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCc
Q 006942 147 LIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGD 226 (624)
Q Consensus 147 A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (624)
|+..|+.+++++|++.+.++ +.
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~-~~--------------------------------------------------------- 103 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVV-NV--------------------------------------------------------- 103 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TC---------------------------------------------------------
T ss_pred HHHcCcHHHHHHHHhCCCCC-CC---------------------------------------------------------
Confidence 99999999999999875543 11
Q ss_pred chhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhccccccc
Q 006942 227 IESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQ 306 (624)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~ 306 (624)
T Consensus 104 -------------------------------------------------------------------------------- 103 (165)
T 3twr_A 104 -------------------------------------------------------------------------------- 103 (165)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCC
Q 006942 307 NSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVN 368 (624)
Q Consensus 307 ~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~ 368 (624)
.+..|.||||+|+..|+.+++++|+++ +++....|..|+||||+|+. ++.+++++|++.+
T Consensus 104 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 104 ADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 344567888888888999999999999 98887679999999999877 8899999999876
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=2.3e-25 Score=207.74 Aligned_cols=169 Identities=16% Similarity=0.163 Sum_probs=146.5
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q 006942 70 NHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIA 149 (624)
Q Consensus 70 ~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~ 149 (624)
.++.||||.||..|+.++++.|++.++..++.+|..|.||||+||..|+.+++++|++.+.+.+. .+..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHH
Confidence 46789999999999999999999997777889999999999999999999999999999999888 89999999999999
Q ss_pred hCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchh
Q 006942 150 ANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIES 229 (624)
Q Consensus 150 ~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (624)
.|+.++++.|++.+.++ +.
T Consensus 82 ~~~~~~v~~Ll~~g~~~-~~------------------------------------------------------------ 100 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADI-NA------------------------------------------------------------ 100 (179)
T ss_dssp TTCHHHHHHHHHTTCCT-TC------------------------------------------------------------
T ss_pred cCCHHHHHHHHHcCCCC-Cc------------------------------------------------------------
Confidence 99999999999876543 11
Q ss_pred hhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCc
Q 006942 230 FIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSA 309 (624)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~ 309 (624)
.+.
T Consensus 101 -----------------------------------------------------------------------------~d~ 103 (179)
T 3f6q_A 101 -----------------------------------------------------------------------------VNE 103 (179)
T ss_dssp -----------------------------------------------------------------------------CCT
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 345
Q ss_pred cccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCCcHHHHHHHcCChhHHHHHhcCCccccccccccCCC
Q 006942 310 QLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGHTIFDHAVLYRREKVFNLIQGVNFTTFLFSSRDKAG 381 (624)
Q Consensus 310 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~~~~~~~vn~~D~~G 381 (624)
.|.||||+|+..|+.++++.|+++ +++....|..|+||||+|+..++.+++++|++.+ ..++..+.++
T Consensus 104 ~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g---~~~~~~~~~~ 171 (179)
T 3f6q_A 104 HGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPLRELLRERAEKMG---QNLNRIPYKD 171 (179)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT---CCCSCBCCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh---cCcccCCccc
Confidence 567888888888899999999999 9888766999999999999999999999999998 4455665544
No 73
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=1e-27 Score=249.15 Aligned_cols=258 Identities=14% Similarity=0.039 Sum_probs=175.8
Q ss_pred chHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCC--CcccCCCCCCh
Q 006942 31 MTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPD--LTNIRHGEGFL 108 (624)
Q Consensus 31 ~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~--l~~~~n~~G~T 108 (624)
.++++.|+. +.+ +.+++++|++.+ .+++||||+||+.|+.++|++|+++++. .....|..|.|
T Consensus 66 ll~~~~a~~---~~~---~~~~~~~l~~~g---------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~t 130 (376)
T 2aja_A 66 LLCLYYAHY---NRN---AKQLWSDAHKKG---------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ 130 (376)
T ss_dssp HHHHHHHHT---TTT---CTTHHHHHHHHT---------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHH
T ss_pred HHHHHHHHh---cCC---CHHHHHHHHHcC---------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCC
Confidence 567777766 135 678888888775 2345999999999999999999999762 12345667899
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCC---ccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCc-ccCCCCCCHHHHHH-c
Q 006942 109 PVHDAALYGHKDTFHYLLEVTHGV---DIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGR-DSIDSRRIILNTLA-Q 183 (624)
Q Consensus 109 PLh~Aa~~g~~~iv~~Ll~~~~~~---~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~-~~d~~G~TpLh~Aa-~ 183 (624)
|||+||.+|+.++|++|++++++. +. .+.+ .||||+|+.+|+.+++++|++++++... ..|.+|.||||+|+ +
T Consensus 131 pL~~Aa~~G~~eiv~~Ll~~gad~~~~~i-~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~ 208 (376)
T 2aja_A 131 AFRLAAENGHLHVLNRLCELAPTEIMAMI-QAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG 208 (376)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCTTTHHHHH-SHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCcccccc-CCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHH
Confidence 999999999999999999999752 22 2233 9999999999999999999999886532 26788999999999 8
Q ss_pred CCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHHHHH
Q 006942 184 KPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHR 263 (624)
Q Consensus 184 ~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (624)
.|+
T Consensus 209 ~G~----------------------------------------------------------------------------- 211 (376)
T 2aja_A 209 RGH----------------------------------------------------------------------------- 211 (376)
T ss_dssp TCC-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 752
Q ss_pred HhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCceecCC
Q 006942 264 MLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQ 343 (624)
Q Consensus 264 ~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~ 343 (624)
.+.+++| .+. ...|.||||.|+.+|+.+++++|++. +++....|
T Consensus 212 -----------------------~eiv~~L---l~~--------ga~~~taL~~Aa~~g~~evv~lL~~~-ga~~~~~~- 255 (376)
T 2aja_A 212 -----------------------HNVINFL---LDC--------PVMLAYAEIHEFEYGEKYVNPFIARH-VNRLKEMH- 255 (376)
T ss_dssp -----------------------HHHHHHH---TTS--------HHHHHHHHHCTTTTTTTTHHHHHHHH-HHHHHHHH-
T ss_pred -----------------------HHHHHHH---HhC--------CCccchHHHHHHHCCCHHHHHHHHhc-Cccccccc-
Confidence 1133332 221 22378999999999999999999998 76654332
Q ss_pred CCCcHHHHHHHcCChh---------------------------HHHHHhcCCcccccc--ccccCCCCchhhhhhhcCCC
Q 006942 344 DGHTIFDHAVLYRREK---------------------------VFNLIQGVNFTTFLF--SSRDKAGNNILHLAGRLVPS 394 (624)
Q Consensus 344 ~G~T~Lh~A~~~~~~~---------------------------iv~~Ll~~~~~~~~v--n~~D~~GnTpLHlAa~~~~~ 394 (624)
++++.|+.+|+.+ .+++|++.+....++ ...++.++||||+|++.|+.
T Consensus 256 ---~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~ 332 (376)
T 2aja_A 256 ---DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 332 (376)
T ss_dssp ---TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCT
T ss_pred ---HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcH
Confidence 2445555555444 444555443111111 24456789999999999997
Q ss_pred CCccchHHHhHHHHhHHHHHHhhcCcccccccCCCCCChhhhhhHH
Q 006942 395 SEVAGAALQMQRELQWFKAIENLVHPFFREATNDLKQTPREVFTEE 440 (624)
Q Consensus 395 ~~~~gaalq~~~~l~~~~~v~~~~~~~~~~~~N~~G~Tp~dl~~~~ 440 (624)
+ .|+-+++ ...+++..|+||++.++..
T Consensus 333 e-----------------~v~lLl~--~~~v~~~~~~~~~~~~~~~ 359 (376)
T 2aja_A 333 G-----------------ACALLLS--IPSVLALTKANNYYINETG 359 (376)
T ss_dssp T-----------------HHHHHTT--SHHHHHSCC----------
T ss_pred H-----------------HHHHHHc--ChHHHHHHHHhcccccccc
Confidence 6 2444443 2466788899999887654
No 74
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=4e-25 Score=201.03 Aligned_cols=147 Identities=22% Similarity=0.245 Sum_probs=136.7
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSA 80 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa 80 (624)
|+..|+.+.++.++++.+..++.. +..| +||||+ |. .| +.++++.|++.+ .+++.+|..|.||||+|+
T Consensus 9 A~~~g~~~~v~~ll~~~~~~~~~~-~~~g-~t~L~~-~~----~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~ 76 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHRELVHPDAL-NRFG-KTALQV-MM----FG---STAIALELLKQG--ASPNVQDTSGTSPVHDAA 76 (156)
T ss_dssp HHHHTCHHHHHHHHHTTCCCTTCC-CTTS-CCHHHH-SC----TT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHH
T ss_pred HHHhCCHHHHHHHHHhhCcCcccc-CCCC-CcHHHH-HH----cC---CHHHHHHHHHCC--CCCCCcCCCCCCHHHHHH
Confidence 678999999999999955566666 8899 999999 99 99 999999999997 678999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHH
Q 006942 81 AKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLL 160 (624)
Q Consensus 81 ~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll 160 (624)
..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++. .+.+. +|.+|.||||+|+..|+.++++.|+
T Consensus 77 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR-RDARGLTPLELALQRGAQDLVDILQ 153 (156)
T ss_dssp HTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC-CCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred HcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC-cCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 99999999999999988 888999999999999999999999999999 77777 8999999999999999999999998
Q ss_pred Hh
Q 006942 161 KR 162 (624)
Q Consensus 161 ~~ 162 (624)
++
T Consensus 154 ~~ 155 (156)
T 1bd8_A 154 GH 155 (156)
T ss_dssp TT
T ss_pred hh
Confidence 75
No 75
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=3e-25 Score=206.99 Aligned_cols=154 Identities=17% Similarity=0.197 Sum_probs=133.0
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSA 80 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa 80 (624)
|+..|+.+.++.++++.+..++.+ +..| .||||+||. .| +.+++++|++.+ .+++.+|..|.||||+|+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~-~~~g-~t~L~~A~~----~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 12 QCREGNAVAVRLWLDNTENDLNQG-DDHG-FSPLHWACR----EG---RSAVVEMLIMRG--ARINVMNRGDDTPLHLAA 80 (179)
T ss_dssp HHHHTCHHHHHHHHHCTTSCTTCC-CTTS-CCHHHHHHH----TT---CHHHHHHHHHTT--CCTTCCCTTCCCHHHHHH
T ss_pred HHHcCCHHHHHHHHhcCccccccc-CCCC-CCHHHHHHH----cC---cHHHHHHHHHcC--CCCCCcCCCCCCHHHHHH
Confidence 567888999998888877777766 8888 899999999 89 899999999886 677888888999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHH
Q 006942 81 AKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLL 160 (624)
Q Consensus 81 ~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll 160 (624)
..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++++++.+. ++..|.||||+|+..++.++++.|+
T Consensus 81 ~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI-CNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB-CCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch-hccCCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999988887 778888899999999999999999999998888887 8888999999998888888898888
Q ss_pred HhCCCCC
Q 006942 161 KRHPTIG 167 (624)
Q Consensus 161 ~~~~~l~ 167 (624)
+.+.++.
T Consensus 159 ~~g~~~~ 165 (179)
T 3f6q_A 159 KMGQNLN 165 (179)
T ss_dssp HTTCCCS
T ss_pred HhhcCcc
Confidence 8877664
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=9.2e-27 Score=228.04 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=97.5
Q ss_pred CCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCC
Q 006942 27 EPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEG 106 (624)
Q Consensus 27 ~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G 106 (624)
..| .||||.|++ .| +.+.++.|++++ .+++. +..|.||||.|+..|+.++|+.|++.+++ ++.+|..|
T Consensus 3 ~~g-~t~L~~a~~----~~---~~~~~~~ll~~g--~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g 70 (239)
T 1ycs_B 3 ITG-QVSLPPGKR----TN---LRKTGSERIAHG--MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEG 70 (239)
T ss_dssp ---------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTS
T ss_pred ccc-cccCchhhh----hh---hHHHHHHHhccC--CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCC
Confidence 467 999999999 99 999999999998 45553 47889999999999999999999999987 88999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCC-CCHHHHH
Q 006942 107 FLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSR-RIILNTL 181 (624)
Q Consensus 107 ~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G-~TpLh~A 181 (624)
.||||+||..|+.+++++|++++++.+. +|.+|+||||+|+..|+.++++.|++++.++. .+|..| .||||+|
T Consensus 71 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~t~l~~a 144 (239)
T 1ycs_B 71 ITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDMQTAADKC 144 (239)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSSCCCHHHHC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-eecCCCCcchHHHH
Confidence 9999999999999999999999999988 89999999999999999999999999988764 344443 4777766
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=9.1e-25 Score=198.10 Aligned_cols=143 Identities=16% Similarity=0.126 Sum_probs=132.7
Q ss_pred chHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHH
Q 006942 31 MTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPV 110 (624)
Q Consensus 31 ~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPL 110 (624)
.||||.|+. .| +.++|+.|++.+. +++ .|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.|||
T Consensus 3 ~~~L~~A~~----~g---~~~~v~~Ll~~g~--~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L 71 (153)
T 1awc_B 3 GKKLLEAAR----AG---QDDEVRILMANGA--PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPL 71 (153)
T ss_dssp HHHHHHHHH----HT---CHHHHHHHHHHTC--CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHH
T ss_pred cHHHHHHHH----cC---CHHHHHHHHHcCC--CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence 699999999 99 9999999999974 333 588999999999999999999999999888 788999999999
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCC
Q 006942 111 HDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPY 186 (624)
Q Consensus 111 h~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~ 186 (624)
|+|+..|+.+++++|++++++.+. ++..|.||||+|+..|+.++++.|++.+.++ +.+|.+|.||||+|+..++
T Consensus 72 ~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 72 HMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGN 145 (153)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCC
Confidence 999999999999999999999888 8999999999999999999999999998765 6689999999999998753
No 78
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=9.3e-25 Score=198.05 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=134.1
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSA 80 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa 80 (624)
|+..|+.+.++.+++...... . +..| .||||+|+. .| +.+++++|++.+ .+++.+|..|.||||+|+
T Consensus 9 A~~~g~~~~v~~Ll~~g~~~~--~-~~~g-~t~L~~A~~----~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~ 75 (153)
T 1awc_B 9 AARAGQDDEVRILMANGAPFT--T-DWLG-TSPLHLAAQ----YG---HFSTTEVLLRAG--VSRDARTKVDRTPLHMAA 75 (153)
T ss_dssp HHHHTCHHHHHHHHHHTCCCC--C-CTTC-CCHHHHHHH----HT---CHHHHHHHHTTT--CCTTCCCTTCCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCC--c-CCCC-CCHHHHHHH----cC---CHHHHHHHHHcC--CCCCCCCCCCCCHHHHHH
Confidence 678999999999999876432 3 7789 999999999 99 999999999987 678899999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHH
Q 006942 81 AKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDL 159 (624)
Q Consensus 81 ~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~L 159 (624)
..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++++++.+. ++..|.||||+|+..|+.+++++|
T Consensus 76 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 76 SEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999988 788999999999999999999999999999999888 899999999999999999999876
No 79
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=3e-25 Score=203.92 Aligned_cols=146 Identities=15% Similarity=0.183 Sum_probs=128.9
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGE 105 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~ 105 (624)
+++| +||||.|++ .| +.++++.|++.. +.+.+..+..|.||||+|+..|+.+++++|++++++ ++.+|..
T Consensus 5 ~~~~-~~~l~~A~~----~g---~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 74 (165)
T 3twr_A 5 NSEA-DRQLLEAAK----AG---DVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKG 74 (165)
T ss_dssp -CHH-HHHHHHHHH----HT---CHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred cchh-hHHHHHHHH----hC---CHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCC
Confidence 5677 899999999 99 999999999875 466778888899999999999999999999999887 7788899
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHc
Q 006942 106 GFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQ 183 (624)
Q Consensus 106 G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~ 183 (624)
|.||||+|+..|+.+++++|++.+.+.+. +|..|.||||+|+..|+.++++.|++.+.+. +.+|.+|.||||+|++
T Consensus 75 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~ 150 (165)
T 3twr_A 75 GLVPLHNACSYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD 150 (165)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT
T ss_pred CCCHHHHHHHcCcHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc
Confidence 99999999999999999999999988888 8899999999999999999999999987664 6788899999999765
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=3.1e-25 Score=217.13 Aligned_cols=184 Identities=10% Similarity=0.039 Sum_probs=126.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 006942 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLI 148 (624)
Q Consensus 69 d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~ 148 (624)
+..|.||||.|++.|+.+.++.|++++.+ ++. +..|.||||.|+..|+.+++++|++.+++.+. +|.+|.||||+|+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL-PNDEGITALHNAV 78 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC-CCTTSCCHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHH
Confidence 34689999999999999999999999887 443 46789999999999999999999999998888 8999999999999
Q ss_pred HhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcch
Q 006942 149 AANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIE 228 (624)
Q Consensus 149 ~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (624)
..|+.++++.|++.+.++ +.
T Consensus 79 ~~g~~~~v~~Ll~~ga~~-~~----------------------------------------------------------- 98 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVNV-NA----------------------------------------------------------- 98 (239)
T ss_dssp HHTCHHHHHHHHHHTCCT-TC-----------------------------------------------------------
T ss_pred HcCCHHHHHHHHHcCCCC-Cc-----------------------------------------------------------
Confidence 999999999999986543 21
Q ss_pred hhhhhhcccCcccccCCCCcchhhhhhhhhHHHHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCC
Q 006942 229 SFIVTSKIHSKESTRFGSTQQITTTFGAMLHKLHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNS 308 (624)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~ 308 (624)
.+
T Consensus 99 ------------------------------------------------------------------------------~d 100 (239)
T 1ycs_B 99 ------------------------------------------------------------------------------AD 100 (239)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------cC
Confidence 34
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHHccCCCceecCCCCC-cHHHHH--HHcCChhHHHHHhcCC-cccc-----ccccccC
Q 006942 309 AQLSVAMLAAAILGIPEVVNEFIMAYDSSSNWSNQDGH-TIFDHA--VLYRREKVFNLIQGVN-FTTF-----LFSSRDK 379 (624)
Q Consensus 309 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~~d~~G~-T~Lh~A--~~~~~~~iv~~Ll~~~-~~~~-----~vn~~D~ 379 (624)
..|.||||+|+..|+.+++++|+++ ++++...|..|. ||||+| +..|+.+++++|++.+ +.+. .....|.
T Consensus 101 ~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~ 179 (239)
T 1ycs_B 101 SDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDY 179 (239)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCB
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEecc
Confidence 4567788888888899999999999 999987765555 999999 8889999999999887 3321 1223488
Q ss_pred CCCchhhhhhhcCCC
Q 006942 380 AGNNILHLAGRLVPS 394 (624)
Q Consensus 380 ~GnTpLHlAa~~~~~ 394 (624)
.|.|++|++.+.|..
T Consensus 180 ~~~~~~eLa~~~G~~ 194 (239)
T 1ycs_B 180 EPQNDDELPMKEGDC 194 (239)
T ss_dssp CCSSTTBCCBCSSCE
T ss_pred CCCCCCcccccCCCE
Confidence 899999999998873
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=4.5e-24 Score=189.41 Aligned_cols=131 Identities=16% Similarity=0.104 Sum_probs=122.8
Q ss_pred ccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 006942 20 ALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLT 99 (624)
Q Consensus 20 ~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~ 99 (624)
.++.. +..| .||||+|+. .| +.+++++|++.+ .+++.+|..|.||||+|+. |+.+++++|++++++ +
T Consensus 4 ~~~~~-~~~g-~t~L~~A~~----~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~ 70 (136)
T 1d9s_A 4 GIHML-GGSS-DAGLATAAA----RG---QVETVRQLLEAG--ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-P 70 (136)
T ss_dssp CCSCC-CCCC-SCHHHHHHH----TT---CHHHHHHHHHTT--CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-S
T ss_pred CccCC-CCCC-ccHHHHHHH----cC---CHHHHHHHHHcC--CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-C
Confidence 34455 8899 999999999 99 999999999997 7789999999999999999 999999999999998 8
Q ss_pred ccCCCC-CChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCC
Q 006942 100 NIRHGE-GFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHP 164 (624)
Q Consensus 100 ~~~n~~-G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~ 164 (624)
+.+|.. |.||||+|+..|+.+++++|++.+++.+. +|..|.||||+|+..++.++++.|++++.
T Consensus 71 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV-CDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCC-CSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 889999 99999999999999999999999999888 89999999999999999999999998764
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=5.8e-24 Score=193.49 Aligned_cols=143 Identities=20% Similarity=0.155 Sum_probs=118.7
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGE 105 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~ 105 (624)
+..| .||||+||. .| +.++|++|++.+ .+++.+|..|.||||+|+ .|+.+++++|++++++ ++.+|..
T Consensus 9 ~~~~-~t~L~~A~~----~g---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~ 76 (156)
T 1bi7_B 9 MEPS-ADWLATAAA----RG---RVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPA 76 (156)
T ss_dssp -CCS-TTHHHHHHH----HT---CHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTT
T ss_pred Cccc-hHHHHHHHH----cC---CHHHHHHHHHcC--CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCC
Confidence 6788 999999999 99 999999999997 678999999999999985 9999999999999988 8899999
Q ss_pred CCh-HHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHH
Q 006942 106 GFL-PVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLA 182 (624)
Q Consensus 106 G~T-PLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa 182 (624)
|.| |||+|+..|+.+++++|++++++.+. ++.+|.||||+|+..|+.+++++|++++.+. ..+|..|.||.+-+.
T Consensus 77 g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDV-RDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAEGPS 152 (156)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------------
T ss_pred CCcHHHHHHHHCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccccCC
Confidence 999 99999999999999999999999988 8999999999999999999999999988775 667889999987543
No 83
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=5.3e-23 Score=182.46 Aligned_cols=125 Identities=25% Similarity=0.230 Sum_probs=118.2
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGE 105 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~ 105 (624)
...| .||||.||. .| +.++|+.|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++ ++.+|..
T Consensus 11 ~~~~-~t~l~~A~~----~g---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~ 79 (136)
T 2jab_A 11 GSDL-GKKLLEAAR----AG---QDDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAI 79 (136)
T ss_dssp -CHH-HHHHHHHHH----HT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred cccc-cHHHHHHHH----hC---CHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCC
Confidence 4567 999999999 99 999999999997 67899999999999999999999999999999988 7889999
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHh
Q 006942 106 GFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKR 162 (624)
Q Consensus 106 G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~ 162 (624)
|.||||+|+..|+.+++++|++++++.+. +|.+|.||||+|+..|+.++++.|++.
T Consensus 80 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 80 GFTPLHLAAFIGHLEIAEVLLKHGADVNA-QDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCcC-cCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 99999999999999999999999999888 899999999999999999999999875
No 84
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.7e-22 Score=175.96 Aligned_cols=125 Identities=26% Similarity=0.372 Sum_probs=118.8
Q ss_pred CCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCC
Q 006942 28 PGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGF 107 (624)
Q Consensus 28 ~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~ 107 (624)
+| +||||.|+. .| +.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.
T Consensus 1 ~g-~t~L~~A~~----~~---~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~ 69 (126)
T 1n0r_A 1 NG-RTPLHLAAR----NG---HLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGR 69 (126)
T ss_dssp CC-CCHHHHHHH----HT---CHHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred CC-ccHHHHHHH----cC---cHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCC
Confidence 47 999999999 99 999999999996 67888999999999999999999999999999888 788999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCC
Q 006942 108 LPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHP 164 (624)
Q Consensus 108 TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~ 164 (624)
||||+|+..|+.+++++|++++.+.+. ++.+|.||||+|+..|+.+++++|++++.
T Consensus 70 t~l~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 70 TPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 999999999999999999999999888 89999999999999999999999999865
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=8.7e-24 Score=198.00 Aligned_cols=147 Identities=10% Similarity=-0.010 Sum_probs=121.7
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchH----HHHHHHHHccCchhhccCCCCCChHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAI----CLLDKLASKVDPETLARQDNHGHTAA 76 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~----~iv~~Ll~~~~~~~~~~~d~~G~TpL 76 (624)
||+.|+.+.++.++..+....+ +..| +||||+|+. .| +. +++++|++.| ++++.+|.+|.|||
T Consensus 13 Aa~~g~~~~~~~l~~~~~~~~~---~~~g-~T~Lh~A~~----~~---~~~~~~~iv~~Ll~~G--advn~~d~~g~TpL 79 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYEDKE---SVLK-SNILYDVLR----NN---NDEARYKISMFLINKG--ADIKSRTKEGTTLF 79 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSSCHH---HHHT-TTHHHHHTT----CS---CHHHHHHHHHHHHHTT--CCSSCCCTTCCCTH
T ss_pred HHHcCCHHHHHHHHhcCccccc---ccCC-CCHHHHHHH----cC---CcchHHHHHHHHHHCC--CCCCCCCCCCCcHH
Confidence 5778999999888887654321 2568 899999998 88 64 5899999987 77888899999999
Q ss_pred HHHHHcCC------HHHHHHHHhcCCCCcccCCCCCC-hHHHHHHHcC-----CHHHHHHHHH-hcCCCccccCCCCCcH
Q 006942 77 TLSAAKGN------LRALKLLVKYNPDLTNIRHGEGF-LPVHDAALYG-----HKDTFHYLLE-VTHGVDIYSGKDGANV 143 (624)
Q Consensus 77 h~Aa~~g~------~~iv~~Ll~~~~~l~~~~n~~G~-TPLh~Aa~~g-----~~~iv~~Ll~-~~~~~~~~~~~~G~t~ 143 (624)
|+|+..|+ .+++++|++++++ ++.+|..|. ||||+|+..+ +.+++++|++ .+++.+. +|..|.||
T Consensus 80 h~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~-~d~~G~Tp 157 (186)
T 3t8k_A 80 FPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI-KDKWGLTA 157 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC-CCTTSCCH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc-cCCCCCCH
Confidence 99998887 6789999999888 888888998 9999998844 3568899998 8888888 89999999
Q ss_pred HHHHHHhCcHHHHHHHHHh
Q 006942 144 LSFLIAANLYDVALDLLKR 162 (624)
Q Consensus 144 Lh~A~~~~~~~~v~~Ll~~ 162 (624)
||+|+..|+.++++.|.+.
T Consensus 158 L~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 158 LEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999888888765
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=4.2e-23 Score=193.35 Aligned_cols=108 Identities=9% Similarity=0.083 Sum_probs=95.8
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCCcccCC-CCCChHHHHHHHcCCH----HHHHHHHHhcCCCccccCCCCCcHHHH
Q 006942 72 GHTAATLSAAKGNLRALKLLVKYNPDLTNIRH-GEGFLPVHDAALYGHK----DTFHYLLEVTHGVDIYSGKDGANVLSF 146 (624)
Q Consensus 72 G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n-~~G~TPLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~~~~G~t~Lh~ 146 (624)
+.++||.|++.|+.+.++.+++.+++ .++ ..|.||||+|+.+|+. +++++|++.|++++. ++.+|+||||+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~-~d~~g~TpLh~ 81 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS-RTKEGTTLFFP 81 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC-CCTTCCCTHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC-CCCCCCcHHHH
Confidence 56899999999999999999998876 444 7799999999999985 599999999999999 89999999999
Q ss_pred HHHhCc------HHHHHHHHHhCCCCCcccCCCCC-CHHHHHHcC
Q 006942 147 LIAANL------YDVALDLLKRHPTIGRDSIDSRR-IILNTLAQK 184 (624)
Q Consensus 147 A~~~~~------~~~v~~Ll~~~~~l~~~~d~~G~-TpLh~Aa~~ 184 (624)
|+..++ .++++.|++++.++ +.+|..|. ||||+|+..
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~ 125 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNY 125 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGC
T ss_pred HHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHc
Confidence 999987 57899999998776 67888999 999988864
No 87
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.87 E-value=2.5e-22 Score=178.08 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=94.6
Q ss_pred hhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCC-CC
Q 006942 63 ETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKD-GA 141 (624)
Q Consensus 63 ~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~-G~ 141 (624)
.+++.+|..|.||||+|+..|+.+++++|++++++ ++.+|..|.||||+|+. |+.+++++|++.+++.+. ++.. |.
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-~~~~~g~ 79 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC-ADPATLT 79 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC-CBTTTTB
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC-cCCCCCC
Confidence 56789999999999999999999999999999887 78899999999999999 999999999999999888 8888 99
Q ss_pred cHHHHHHHhCcHHHHHHHHHhCCCC
Q 006942 142 NVLSFLIAANLYDVALDLLKRHPTI 166 (624)
Q Consensus 142 t~Lh~A~~~~~~~~v~~Ll~~~~~l 166 (624)
||||+|+..|+.++++.|++.+.++
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~ga~~ 104 (136)
T 1d9s_A 80 RPVHDAAREGFLDTLVVLHRAGARL 104 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTCCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999886653
No 88
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=9.4e-24 Score=207.21 Aligned_cols=141 Identities=14% Similarity=0.048 Sum_probs=118.5
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGE 105 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~ 105 (624)
...+ .+++.+++. .| +.+.+..+.... . ..+.+|.||||+||..|+.++++.|++ +.+ ++.+|..
T Consensus 12 ~~~~-~~~~l~~~~----~g---~~~~~~~~~~~~--~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~ 76 (244)
T 3ui2_A 12 AGEG-AMEYLIEWK----DG---HSPSWVPSSYIA--A---DVVSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDEN 76 (244)
T ss_dssp ETTT-EEEEEEEES----SC---CCCEEEEGGGSC--H---HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTT
T ss_pred cCCC-ccHHHHHHH----cC---CCcccccccccc--c---ccccCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCC
Confidence 3456 777777777 77 665555444432 2 234678999999999999999999999 666 7889999
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHc
Q 006942 106 GFLPVHDAALYGHKDTFHYLLEVTHGVDIYSG-KDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQ 183 (624)
Q Consensus 106 G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~ 183 (624)
|.||||+||..|+.+++++|++++++.+. ++ ..|.||||+|+..|+.++++.|++.+.++ +.+|..|.||||+|++
T Consensus 77 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 77 GRTALLFVAGLGSDKCVRLLAEAGADLDH-RDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELARE 153 (244)
T ss_dssp SCBHHHHHHHHTCHHHHHHHHHTTCCTTC-CCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHH
Confidence 99999999999999999999999999887 66 88999999999999999999999997765 5678899999999884
No 89
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.87 E-value=3.2e-22 Score=181.88 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=47.5
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCc-HHH
Q 006942 67 RQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGAN-VLS 145 (624)
Q Consensus 67 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t-~Lh 145 (624)
..+..|.||||+|+..|+.++|++|++++++ ++.+|..|.||||+|+ .|+.+++++|++.+.+.+. ++..|.| |||
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~-~d~~g~ttpL~ 83 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-ADPATLTRPVH 83 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-CCTTTCCCHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC-cCCCCCcHHHH
Confidence 3445555555555555555555555555554 4455555555555553 5555555555555554444 4444444 444
Q ss_pred HHHHhCcHHHHHHHHHh
Q 006942 146 FLIAANLYDVALDLLKR 162 (624)
Q Consensus 146 ~A~~~~~~~~v~~Ll~~ 162 (624)
+|+..|+.+++++|+++
T Consensus 84 ~A~~~~~~~~v~~Ll~~ 100 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRA 100 (156)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHc
Confidence 44444444444444443
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.86 E-value=1.6e-22 Score=179.61 Aligned_cols=126 Identities=21% Similarity=0.216 Sum_probs=115.2
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGE 105 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~ 105 (624)
+.+| +||||+||. .| +.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++ ++.+|..
T Consensus 7 ~~~g-~t~L~~A~~----~~---~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~ 75 (137)
T 3c5r_A 7 NHRG-ETLLHIASI----KG---DIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQ 75 (137)
T ss_dssp CTTC-CCHHHHHHH----HT---CHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGG
T ss_pred CCCC-CCHHHHHHH----cC---CHHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCC
Confidence 7889 999999999 99 999999999997 67889999999999999999999999999999888 7889999
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhC
Q 006942 106 GFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRH 163 (624)
Q Consensus 106 G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~ 163 (624)
|.||||+|+..|+.+++++|++.+++.+. +|.+|.||||+|+..+..++++.+.+..
T Consensus 76 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 76 NDSPLHDAAKNGHVDIVKLLLSYGASRNA-VNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp GCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 99999999999999999999999999888 8999999999999998888877666543
No 91
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=6.6e-22 Score=172.06 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=105.2
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGE 105 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~ 105 (624)
+..| +||||.|+. .| +.++++.|++.+ .+++.+|..|.||||+||..|+.+++++|++++++ ++.+|..
T Consensus 4 ~~~~-~~~l~~A~~----~~---~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~ 72 (123)
T 3aaa_C 4 GSMC-DKEFMWALK----NG---DLDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKH 72 (123)
T ss_dssp ---C-HHHHHHHHH----TT---CHHHHHHHHHTT--CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTT
T ss_pred cccc-chHHHHHHH----cC---CHHHHHHHHHcC--CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCC
Confidence 5678 999999999 99 999999999987 67889999999999999999999999999999988 8889999
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHH
Q 006942 106 GFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYD 154 (624)
Q Consensus 106 G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~ 154 (624)
|.||||+|+..|+.+++++|++++++.+. +|.+|.||||+|...+..+
T Consensus 73 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 73 HITPLLSAVYEGHVSCVKLLLSKGADKTV-KGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHhCCHHHHH
Confidence 99999999999999999999999999888 8999999999995544333
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=6.5e-22 Score=185.05 Aligned_cols=113 Identities=17% Similarity=0.098 Sum_probs=104.1
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccC-CCCCcHHHH
Q 006942 68 QDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSG-KDGANVLSF 146 (624)
Q Consensus 68 ~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~G~t~Lh~ 146 (624)
.+.+|.||||.|+..|+.++++.|++ +.+ ++.+|..|.||||+|+..|+.+++++|++.+++.+. ++ .+|+||||+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~g~tpL~~ 116 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH-RDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCSSSSCCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCCHHHH
Confidence 35689999999999999999999999 666 788999999999999999999999999999999887 66 899999999
Q ss_pred HHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcC
Q 006942 147 LIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQK 184 (624)
Q Consensus 147 A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~ 184 (624)
|+..|+.++++.|++.+.++ +.+|.+|.||||+|++.
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~ 153 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREI 153 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHh
Confidence 99999999999999998775 67899999999999854
No 93
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.84 E-value=2e-20 Score=162.76 Aligned_cols=93 Identities=30% Similarity=0.422 Sum_probs=87.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh
Q 006942 71 HGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAA 150 (624)
Q Consensus 71 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~ 150 (624)
+|.||||+|+..|+.++++.|++++++ ++.+|..|.||||+|+..|+.+++++|++.+.+.+. ++..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCcHHHHHHHc
Confidence 589999999999999999999999888 778899999999999999999999999999998888 899999999999999
Q ss_pred CcHHHHHHHHHhCCC
Q 006942 151 NLYDVALDLLKRHPT 165 (624)
Q Consensus 151 ~~~~~v~~Ll~~~~~ 165 (624)
++.+++++|++.+.+
T Consensus 79 ~~~~~~~~Ll~~g~~ 93 (126)
T 1n0r_A 79 GHLEVVKLLLEAGAD 93 (126)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred ChHHHHHHHHHcCCC
Confidence 999999999987654
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=4.3e-21 Score=194.00 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=122.5
Q ss_pred CCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhcc------CCCCCChHHHHHHHc---CCHHHHHHHHhcCCCC
Q 006942 28 PGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLAR------QDNHGHTAATLSAAK---GNLRALKLLVKYNPDL 98 (624)
Q Consensus 28 ~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~------~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~~~~l 98 (624)
.+ .++||.|+. .| +.+.|+.|++.+ .+++. .|..|.||||+|+.. |+.+++++|++++++
T Consensus 150 ~~-~~~L~~A~~----~g---~~~~v~~ll~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad- 218 (301)
T 2b0o_E 150 PE-PQRLWTAIC----NR---DLLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH- 218 (301)
T ss_dssp -C-HHHHHHHHH----TT---CHHHHHHHHHTT--CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-
T ss_pred ch-HHHHhhhhh----cc---CHHHHHHHHhcC--CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-
Confidence 35 688999999 99 999999999987 55665 689999999999997 999999999999988
Q ss_pred cccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHH
Q 006942 99 TNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIIL 178 (624)
Q Consensus 99 ~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpL 178 (624)
++.+|..|.||||+|+..|+.+++++|++.+++.+. +|.+|.||||+|+..|+.+++++|++.+.+ .|.|||
T Consensus 219 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpL 290 (301)
T 2b0o_E 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT-VNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPL 290 (301)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSC-CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCC
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChh
Confidence 888999999999999999999999999999999988 999999999999999999999999997653 589999
Q ss_pred HHHHcCC
Q 006942 179 NTLAQKP 185 (624)
Q Consensus 179 h~Aa~~~ 185 (624)
|+|++.+
T Consensus 291 h~A~~~g 297 (301)
T 2b0o_E 291 HVDYSWV 297 (301)
T ss_dssp C------
T ss_pred HHHHhcC
Confidence 9999875
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.84 E-value=3.7e-21 Score=179.91 Aligned_cols=129 Identities=18% Similarity=0.186 Sum_probs=117.1
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCC-C
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRH-G 104 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n-~ 104 (624)
+.+| +||||.||. .| +.++++.|++ + .+++.+|..|.||||+|+..|+.+++++|++++++ ++.+| .
T Consensus 41 ~~~g-~t~L~~A~~----~g---~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~ 108 (183)
T 3deo_A 41 VSEY-ETPWWTAAR----KA---DEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMR 108 (183)
T ss_dssp HHHH-HHHHHHHHH----TT---CHHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSS
T ss_pred CCCC-CCHHHHHHH----cC---CHHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCC
Confidence 5678 999999999 99 9999999999 5 67899999999999999999999999999999998 66666 8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcC
Q 006942 105 EGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQK 184 (624)
Q Consensus 105 ~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~ 184 (624)
.|.||||+|+..|+.+++++|++++++.+. +|.+|.||||+|+..++. ..+.+||++|++.
T Consensus 109 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~ 169 (183)
T 3deo_A 109 GGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAREILKT------------------TPKGNPMQFGRRI 169 (183)
T ss_dssp SSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHH
T ss_pred CCCCHHHHHHhcCcHHHHHHHHHcCCCCcC-CCCCCCCHHHHHHHhccC------------------cccccHHHHHHHc
Confidence 899999999999999999999999999988 899999999999975432 3567999999976
Q ss_pred C
Q 006942 185 P 185 (624)
Q Consensus 185 ~ 185 (624)
+
T Consensus 170 ~ 170 (183)
T 3deo_A 170 G 170 (183)
T ss_dssp H
T ss_pred C
Confidence 3
No 96
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.84 E-value=2.2e-21 Score=187.39 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=114.3
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhc-CCCCcccCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKY-NPDLTNIRHG 104 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~-~~~l~~~~n~ 104 (624)
+.+| .||||+||. .| +.++|+.|++.+ .+++.+|..|.||||+||..|+.++|++|++. +.+ ++.+|.
T Consensus 70 ~~~g-~t~L~~A~~----~g---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~ 138 (222)
T 3ehr_A 70 AESI-DNPLHEAAK----RG---NLSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNK 138 (222)
T ss_dssp EEEE-SCHHHHHHH----HT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCT
T ss_pred cccc-ccccccccc----cC---cHHHHHHHHhCC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCC
Confidence 5678 999999999 99 999999999987 67899999999999999999999999999999 666 889999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCC
Q 006942 105 EGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTI 166 (624)
Q Consensus 105 ~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l 166 (624)
.|.||||+|+..|+.+++++|++++++.+. +|.+|.||||+|+..++.++++.|++.+...
T Consensus 139 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 139 LGDTALHAAAWKGYADIVQLLLAKGARTDL-RNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHTCCSCC-CCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCcc-ccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 999999999999999999999999999988 9999999999999999999999999876543
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.84 E-value=4.5e-21 Score=188.05 Aligned_cols=129 Identities=18% Similarity=0.195 Sum_probs=117.0
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCC-C
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRH-G 104 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n-~ 104 (624)
+.+| +||||.||. .| +.++|+.|++ + .+++.+|..|.||||+||..|+.++|++|++++++ ++.++ .
T Consensus 42 ~~~g-~t~L~~A~~----~g---~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~ 109 (244)
T 3ui2_A 42 VSEY-ETPWWTAAR----KA---DEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMR 109 (244)
T ss_dssp HHHH-HHHHHHHHT----TT---CHHHHHHTTT-T--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSS
T ss_pred ccCC-CCHHHHHHH----cC---CHHHHHHHHc-C--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCC
Confidence 4578 999999999 99 9999999999 5 67899999999999999999999999999999998 66666 8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcC
Q 006942 105 EGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQK 184 (624)
Q Consensus 105 ~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~ 184 (624)
.|.||||+|+..|+.+++++|++++++.+. +|..|.||||+|+..+ .+..+.||||+|+..
T Consensus 110 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~ 170 (244)
T 3ui2_A 110 GGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAREIL------------------KTTPKGNPMQFGRRI 170 (244)
T ss_dssp SCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHc
Confidence 899999999999999999999999999988 8999999999998632 125688999999977
Q ss_pred C
Q 006942 185 P 185 (624)
Q Consensus 185 ~ 185 (624)
+
T Consensus 171 g 171 (244)
T 3ui2_A 171 G 171 (244)
T ss_dssp H
T ss_pred C
Confidence 4
No 98
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.83 E-value=2.4e-20 Score=165.40 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=108.3
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHH
Q 006942 67 RQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSF 146 (624)
Q Consensus 67 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~ 146 (624)
.+|.+|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+.+.+. ++..|.||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT-TGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC-cCCCCCCHHHH
Confidence 6789999999999999999999999999888 788999999999999999999999999999999888 89999999999
Q ss_pred HHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcC
Q 006942 147 LIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQK 184 (624)
Q Consensus 147 A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~ 184 (624)
|+..|+.++++.|++.+.++ +.+|.+|.||||+|+..
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~ 119 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDE 119 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhc
Confidence 99999999999999987765 67899999999999865
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.82 E-value=4.6e-20 Score=160.34 Aligned_cols=113 Identities=16% Similarity=0.114 Sum_probs=103.5
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 006942 69 DNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLI 148 (624)
Q Consensus 69 d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~ 148 (624)
+..|.||||.|+..|+.++++.|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+++.+. +|.+|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHH
Confidence 56788999999999999999999999988 788999999999999999999999999999999888 8999999999999
Q ss_pred HhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcC
Q 006942 149 AANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQK 184 (624)
Q Consensus 149 ~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~ 184 (624)
..|+.++++.|++.+.++ +.+|.+|.||||+|...
T Consensus 82 ~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCH
T ss_pred HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCH
Confidence 999999999999998775 67899999999998543
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=190.53 Aligned_cols=134 Identities=21% Similarity=0.164 Sum_probs=113.6
Q ss_pred CccCCCHHHHHHHHHcCccccccc-----cCCCCCchHHHHHHhhhhhc---CCcchHHHHHHHHHccCchhhccCCCCC
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAK-----IVEPGSMTIFHMIVELLIDA---ESDEAICLLDKLASKVDPETLARQDNHG 72 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~-----~~~~g~~T~Lh~Aa~~~~~~---g~~~~~~iv~~Ll~~~~~~~~~~~d~~G 72 (624)
|+..|+.+.++.+++...+ ++.. .+..| +||||+||. . | +.++|++|++.+ .+++.+|.+|
T Consensus 158 A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g-~t~Lh~A~~----~~~~~---~~~iv~~Ll~~g--advn~~d~~G 226 (301)
T 2b0o_E 158 AICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPE-ELVLHLAVK----VANQA---SLPLVDFIIQNG--GHLDAKAADG 226 (301)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCE-ECHHHHHHH----TCCTT---THHHHHHHHHHS--SCTTCCCTTC
T ss_pred hhhccCHHHHHHHHhcCCc-ccccCCCcccCCCC-ccHHHHHHH----hcccC---cHHHHHHHHhcC--CCCCCCCCCC
Confidence 5789999999999977654 3331 27789 999999999 8 8 999999999997 7889999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCc
Q 006942 73 HTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANL 152 (624)
Q Consensus 73 ~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~ 152 (624)
+||||+|+..|+.++|++|++++++ ++.+|..|.||||+|+..|+.+++++|++.+++ .|.||||+|+..|+
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI 298 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence 9999999999999999999999998 889999999999999999999999999998754 57899999999886
Q ss_pred H
Q 006942 153 Y 153 (624)
Q Consensus 153 ~ 153 (624)
.
T Consensus 299 ~ 299 (301)
T 2b0o_E 299 S 299 (301)
T ss_dssp -
T ss_pred c
Confidence 4
No 101
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.82 E-value=3.9e-20 Score=163.86 Aligned_cols=116 Identities=20% Similarity=0.198 Sum_probs=106.5
Q ss_pred CccCCCHHHHHHHHHcCccccccccCCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHH
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAKIVEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSA 80 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~~~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa 80 (624)
|+..|+.+.++.+++... .++.+ +..| .||||+||. .| +.+++++|++.+ .+++.+|..|.||||+|+
T Consensus 21 A~~~g~~~~v~~Ll~~g~-~~~~~-~~~g-~t~L~~A~~----~~---~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 21 AARAGQDDEVRILMANGA-DVNAK-DEYG-LTPLYLATA----HG---HLEIVEVLLKNG--ADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp HHHHTCHHHHHHHHHTTC-CTTCC-CTTS-CCHHHHHHH----HT---CHHHHHHHHHTT--CCTTCCCTTCCCHHHHHH
T ss_pred HHHhCCHHHHHHHHHcCC-CCCCc-CCCC-CCHHHHHHH----cC---CHHHHHHHHHcC--CCCCcCCCCCCCHHHHHH
Confidence 678999999999998854 45555 8889 999999999 99 999999999997 678999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhc
Q 006942 81 AKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVT 129 (624)
Q Consensus 81 ~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~ 129 (624)
..|+.+++++|++++++ ++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 89 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999988 7889999999999999999999999999864
No 102
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=9e-20 Score=149.98 Aligned_cols=92 Identities=28% Similarity=0.417 Sum_probs=79.0
Q ss_pred CCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCC
Q 006942 28 PGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGF 107 (624)
Q Consensus 28 ~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~ 107 (624)
+| +||||+||. .| +.+++++|++.+ .+++.+|.+|.||||+|+..|+.+++++|++++++ ++.+|.+|.
T Consensus 1 ~g-~t~L~~A~~----~~---~~~~v~~Ll~~g--~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~ 69 (93)
T 1n0q_A 1 NG-RTPLHLAAR----NG---HLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGR 69 (93)
T ss_dssp ---CCHHHHHHH----HT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred CC-CcHHHHHHH----cC---CHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCC
Confidence 36 899999999 89 899999999886 67788888899999999999999999999988887 778888899
Q ss_pred hHHHHHHHcCCHHHHHHHHHhcC
Q 006942 108 LPVHDAALYGHKDTFHYLLEVTH 130 (624)
Q Consensus 108 TPLh~Aa~~g~~~iv~~Ll~~~~ 130 (624)
||||+|+..|+.+++++|++.++
T Consensus 70 t~l~~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 70 TPLHLAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999988875
No 103
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=1.6e-19 Score=186.76 Aligned_cols=145 Identities=12% Similarity=0.138 Sum_probs=117.4
Q ss_pred CCCchHHHHHHhhhhhc-CCcchHHHHHHHHHccCchhhccCC--CCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCC
Q 006942 28 PGSMTIFHMIVELLIDA-ESDEAICLLDKLASKVDPETLARQD--NHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHG 104 (624)
Q Consensus 28 ~g~~T~Lh~Aa~~~~~~-g~~~~~~iv~~Ll~~~~~~~~~~~d--~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~ 104 (624)
.+ .|+||.|+. . | +.++++.|++.+ .+++..| ..|.||||+||..|+.++|++|++++++ ++.+|.
T Consensus 198 ~~-~t~L~~Aa~----~~g---~~~~v~~LL~~G--advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~ 266 (368)
T 3jue_A 198 HP-GALLFRASG----HPP---SLPTMADALAHG--ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADS 266 (368)
T ss_dssp CH-HHHHHHHTS----SSC---CHHHHHHHHHTT--CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred CC-CcHHHHHHH----ccC---CHHHHHHHHHcC--CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCC
Confidence 45 789999999 9 9 999999999997 6777777 8999999999999999999999999988 889999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCC--cccCCCCCCHHHHHH
Q 006942 105 EGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIG--RDSIDSRRIILNTLA 182 (624)
Q Consensus 105 ~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~--~~~d~~G~TpLh~Aa 182 (624)
.|.||||+|+..|+.+++++|++++++.+. +|.+|.||||+|+..++.+++++|++...... ...+..+.|+++++.
T Consensus 267 ~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~-~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~ 345 (368)
T 3jue_A 267 AGRGPLHHATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR 345 (368)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHCcCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence 999999999999999999999999999988 89999999999999999999999998754322 234566888888766
Q ss_pred cC
Q 006942 183 QK 184 (624)
Q Consensus 183 ~~ 184 (624)
..
T Consensus 346 ~~ 347 (368)
T 3jue_A 346 DF 347 (368)
T ss_dssp --
T ss_pred HH
Confidence 43
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.79 E-value=5.9e-19 Score=145.06 Aligned_cols=92 Identities=30% Similarity=0.426 Sum_probs=86.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh
Q 006942 71 HGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAA 150 (624)
Q Consensus 71 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~ 150 (624)
+|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.+++.+. +|.+|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHc
Confidence 589999999999999999999999988 889999999999999999999999999999999988 899999999999999
Q ss_pred CcHHHHHHHHHhCC
Q 006942 151 NLYDVALDLLKRHP 164 (624)
Q Consensus 151 ~~~~~v~~Ll~~~~ 164 (624)
|+.++++.|++.+.
T Consensus 79 ~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 79 GHLEVVKLLLEAGA 92 (93)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCC
Confidence 99999999998764
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.78 E-value=5.6e-19 Score=191.58 Aligned_cols=138 Identities=12% Similarity=0.127 Sum_probs=117.3
Q ss_pred CCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccC------CCCCChHHHHHHH---cCCHHHHHHHHhcCCC
Q 006942 27 EPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQ------DNHGHTAATLSAA---KGNLRALKLLVKYNPD 97 (624)
Q Consensus 27 ~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~------d~~G~TpLh~Aa~---~g~~~iv~~Ll~~~~~ 97 (624)
... .+.||.|+. .| +.+.|+.|++.+ .+++.. |..|.||||+||. .|+.++|++|++++++
T Consensus 130 ~~~-~~~L~~A~~----~g---~~~~v~~ll~~g--~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~ 199 (497)
T 3lvq_E 130 TPE-PQRLWTAIC----NR---DLLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH 199 (497)
T ss_dssp C-C-HHHHHHHHH----HT---CHHHHHHHHHTT--CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC
T ss_pred ccc-HHHHHHHHh----cc---CHHHHHHHHhhc--ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC
Confidence 344 688999999 99 999999999998 566655 8899999999966 9999999999999998
Q ss_pred CcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCH
Q 006942 98 LTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRII 177 (624)
Q Consensus 98 l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~Tp 177 (624)
++.+|.+|.||||+||..|+.+++++|++++++.+. +|.+|.||||+|+..|+.++++.|++.+.+.. .+|
T Consensus 200 -vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~-------~~~ 270 (497)
T 3lvq_E 200 -LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT-VNEAGETALDIARKKHHKECEELLEQAQAGTF-------AFP 270 (497)
T ss_dssp -TTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSC-CCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------------
T ss_pred -CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC-------CCc
Confidence 889999999999999999999999999999999998 89999999999999999999999999987653 278
Q ss_pred HHHHHc
Q 006942 178 LNTLAQ 183 (624)
Q Consensus 178 Lh~Aa~ 183 (624)
+|.+..
T Consensus 271 ~h~~~~ 276 (497)
T 3lvq_E 271 LHVDYS 276 (497)
T ss_dssp ------
T ss_pred ceeecc
Confidence 887654
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.78 E-value=1.1e-18 Score=174.31 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=116.0
Q ss_pred chHHHHHHhhhhhcCCcchHHHHHHHHHccCchh----hccCCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCcccCC
Q 006942 31 MTIFHMIVELLIDAESDEAICLLDKLASKVDPET----LARQDNHGHTAATLSAAK---GNLRALKLLVKYNPDLTNIRH 103 (624)
Q Consensus 31 ~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~----~~~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~~~~l~~~~n 103 (624)
.++||.|+. .| +.+.++.+++.+.+.. ++..|..|.||||+||.. |+.+++++|++++++ ++.+|
T Consensus 131 l~~l~~a~~----~~---d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d 202 (278)
T 1dcq_A 131 LHSLCEAVK----TR---DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQT 202 (278)
T ss_dssp HHHHHHHHH----TT---CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCC
T ss_pred hhhhhhHhh----hc---ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccC
Confidence 578999999 99 9999999999974322 566689999999999999 999999999999998 88999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCcHHHHHHHHHhCC
Q 006942 104 GEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIAANLYDVALDLLKRHP 164 (624)
Q Consensus 104 ~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~ 164 (624)
..|.||||+|+..|+.+++++|++.+++.+. +|.+|.||||+|+..|+.++++.|++.+.
T Consensus 203 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 203 GKGSTALHYCCLTDNAECLKLLLRGKASIEI-ANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-ccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999999999999999999999998 99999999999999999999999999865
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.77 E-value=1e-18 Score=174.49 Aligned_cols=121 Identities=23% Similarity=0.297 Sum_probs=109.8
Q ss_pred CccCCCHHHHHHHHHcCccc-----cccccCCCCCchHHHHHHhhhhhc---CCcchHHHHHHHHHccCchhhccCCCCC
Q 006942 1 MIEKNDWQGVEDFVTNHPDA-----LTAKIVEPGSMTIFHMIVELLIDA---ESDEAICLLDKLASKVDPETLARQDNHG 72 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~-----~~~~~~~~g~~T~Lh~Aa~~~~~~---g~~~~~~iv~~Ll~~~~~~~~~~~d~~G 72 (624)
|+..||.+.++.+++...+. ++.. +..| +||||+||. . | +.++|++|++.+ ++++.+|.+|
T Consensus 137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~-~~~g-~t~Lh~A~~----~~~~~---~~~~v~~Ll~~g--a~in~~d~~g 205 (278)
T 1dcq_A 137 AVKTRDIFGLLQAYADGVDLTEKIPLANG-HEPD-ETALHLAVR----SVDRT---SLHIVDFLVQNS--GNLDKQTGKG 205 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTSBCCCSSC-SSTT-CBHHHHHHH----HCCTT---THHHHHHHHHHC--SCTTCCCTTC
T ss_pred HhhhcccHHHHHHHHhhcchhhhcccccc-ccCC-CCcchHHHH----hcccc---hHHHHHHHHHCC--CCccccCCCC
Confidence 56789999999999886653 3333 7889 999999999 9 8 999999999997 7889999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCc
Q 006942 73 HTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVD 133 (624)
Q Consensus 73 ~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~ 133 (624)
.||||+|+..|+.++|++|++++++ ++.+|.+|.||||+|+..|+.+++++|++.+++..
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999998 88999999999999999999999999999987643
No 108
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.77 E-value=9.4e-19 Score=168.80 Aligned_cols=117 Identities=18% Similarity=0.128 Sum_probs=108.5
Q ss_pred hccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHh-cCCCccccCCCCCcH
Q 006942 65 LARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEV-THGVDIYSGKDGANV 143 (624)
Q Consensus 65 ~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~G~t~ 143 (624)
++..+..|.||||+||..|+.++++.|++.+++ ++.+|..|.||||+||..|+.+++++|++. +.+.+. +|..|.||
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~-~d~~g~tp 143 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-QNKLGDTA 143 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC-CCTTSCCH
T ss_pred ccccccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc-cCCCCCCH
Confidence 455677899999999999999999999999988 788999999999999999999999999998 888888 89999999
Q ss_pred HHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHHHHcC
Q 006942 144 LSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNTLAQK 184 (624)
Q Consensus 144 Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~Aa~~ 184 (624)
||+|+..|+.++++.|++.+.++ +.+|.+|.||||+|+..
T Consensus 144 L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~ 183 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNA 183 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcch
Confidence 99999999999999999998775 67899999999999875
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.76 E-value=5.2e-19 Score=151.59 Aligned_cols=106 Identities=25% Similarity=0.282 Sum_probs=87.1
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGE 105 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~ 105 (624)
|.+| +||||+||. .| +.++++.|++.+ .+++.+|..|.||||+|+..|+.+++++|++++++ ++.+|..
T Consensus 6 d~~g-~t~L~~A~~----~~---~~~~~~~Ll~~g--~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~ 74 (115)
T 2l6b_A 6 SKDG-NTPLHNAAK----NG---HAEEVKKLLSKG--ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKD 74 (115)
T ss_dssp SCSS-CCHHHHHHH----HT---CHHHHHHHTTTT--CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTT
T ss_pred CCCC-CCHHHHHHH----cC---CHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCC
Confidence 6778 888888888 88 888888888886 56778888888888888888888888888888877 6778888
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcH
Q 006942 106 GFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANV 143 (624)
Q Consensus 106 G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~ 143 (624)
|.||||+|+..|+.+++++|++++++.+. ++..|.+|
T Consensus 75 g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~-~~~~~~~~ 111 (115)
T 2l6b_A 75 GNTPEHLAKKNGHHEIVKLLDAKGADVNA-RSWGSSHH 111 (115)
T ss_dssp CCCTTHHHHTTTCHHHHHHHHTTSSSHHH-HSCCCC--
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCCCCc-CCcccccc
Confidence 88888888888888888888888888777 77777766
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.74 E-value=2.1e-18 Score=147.76 Aligned_cols=109 Identities=21% Similarity=0.221 Sum_probs=99.6
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHH
Q 006942 67 RQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSF 146 (624)
Q Consensus 67 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~ 146 (624)
.+|.+|.||||+||..|+.++++.|++++++ ++.+|..|.||||+|+..|+.+++++|++.+++.+. +|..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-RSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC-CCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCCHHHH
Confidence 5789999999999999999999999999988 788999999999999999999999999999999888 89999999999
Q ss_pred HHHhCcHHHHHHHHHhCCCCCcccCCCCCCHH
Q 006942 147 LIAANLYDVALDLLKRHPTIGRDSIDSRRIIL 178 (624)
Q Consensus 147 A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpL 178 (624)
|+..++.++++.|++++.++ +.++..|.||-
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADV-NARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence 99999999999999988775 66788888773
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.72 E-value=8.3e-18 Score=182.36 Aligned_cols=130 Identities=20% Similarity=0.165 Sum_probs=107.3
Q ss_pred CccCCCHHHHHHHHHcCccccccc-----cCCCCCchHHHHH---HhhhhhcCCcchHHHHHHHHHccCchhhccCCCCC
Q 006942 1 MIEKNDWQGVEDFVTNHPDALTAK-----IVEPGSMTIFHMI---VELLIDAESDEAICLLDKLASKVDPETLARQDNHG 72 (624)
Q Consensus 1 Aa~~G~~~~v~~ll~~~~~~~~~~-----~~~~g~~T~Lh~A---a~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G 72 (624)
|+..||.+.++.+++...+ ++.+ .+..| +||||+| +. .| +.++|++|++.| ++++.+|.+|
T Consensus 139 A~~~g~~~~v~~ll~~g~~-~n~~~~~~~~~~~g-~t~Lh~A~~~a~----~g---~~~~v~~Ll~~g--a~vn~~d~~g 207 (497)
T 3lvq_E 139 AICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPE-ELVLHLAVKVAN----QA---SLPLVDFIIQNG--GHLDAKAADG 207 (497)
T ss_dssp HHHHTCHHHHHHHHHTTCC-SSSCBCCSSSCCSC-BCHHHHHHHTCC----TT---THHHHHHHHHHS--CCTTCCCSSS
T ss_pred HHhccCHHHHHHHHhhccc-ccCCCCCccccccc-chHHHHHHHhcc----cc---cHHHHHHHHHcC--CCCCccCCCC
Confidence 6788999999999998654 2221 26688 9999999 66 78 999999999998 7899999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q 006942 73 HTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGANVLSFLIA 149 (624)
Q Consensus 73 ~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t~Lh~A~~ 149 (624)
+||||+||..|+.++|++|++++++ ++.+|..|.||||+|+..|+.+++++|++.+++.+. +|+|.+..
T Consensus 208 ~TpLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~-------~~~h~~~~ 276 (497)
T 3lvq_E 208 NTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA-------FPLHVDYS 276 (497)
T ss_dssp CCHHHHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------------------
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC-------Ccceeecc
Confidence 9999999999999999999999998 889999999999999999999999999999987754 57777654
No 112
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.72 E-value=2.7e-17 Score=170.05 Aligned_cols=137 Identities=14% Similarity=0.081 Sum_probs=106.5
Q ss_pred CccC-CCHHHHHHHHHcCccccccccC--CCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHH
Q 006942 1 MIEK-NDWQGVEDFVTNHPDALTAKIV--EPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAAT 77 (624)
Q Consensus 1 Aa~~-G~~~~v~~ll~~~~~~~~~~~~--~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh 77 (624)
|+.. |+.+.++.+++...+ ++.. + ..| .||||+||. .| +.++|++|++.+ .+++.+|..|.||||
T Consensus 206 Aa~~~g~~~~v~~LL~~Gad-vn~~-~~~~~g-~TpLh~Aa~----~g---~~~iv~~LL~~G--advn~~d~~G~TpLh 273 (368)
T 3jue_A 206 ASGHPPSLPTMADALAHGAD-VNWV-NGGQDN-ATPLIQATA----AN---SLLACEFLLQNG--ANVNQADSAGRGPLH 273 (368)
T ss_dssp HTSSSCCHHHHHHHHHTTCC-TTCC-CTTTTC-CCHHHHHHH----TT---CHHHHHHHHHTT--CCTTCCCTTSCCHHH
T ss_pred HHHccCCHHHHHHHHHcCCC-CCcc-ccccCC-CCHHHHHHH----CC---CHHHHHHHHHcC--CCCCCCCCCCCCHHH
Confidence 4667 999999999987543 4444 4 789 999999999 99 999999999997 788999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccc--cCCCCCcHHHHHHHh
Q 006942 78 LSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIY--SGKDGANVLSFLIAA 150 (624)
Q Consensus 78 ~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~--~~~~G~t~Lh~A~~~ 150 (624)
+|+..|+.++|++|++++++ ++.+|..|.||||+|+..|+.+++++|+..+...... .+..+.|+++.+...
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 99999999999999999998 7899999999999999999999999999887443221 566677787766543
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=5.2e-17 Score=137.93 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=74.3
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGE 105 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~ 105 (624)
+.+| .||||+||. .| +.+++++|++.+ .+++.+|..|.||||+||..|+.+++++|++++++ ++.+|..
T Consensus 21 ~~~g-~t~L~~A~~----~g---~~~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~ 89 (110)
T 2zgd_A 21 GSDL-GKKLLEAAR----AG---QDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKF 89 (110)
T ss_dssp -CCH-HHHHHHHHH----HT---CHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CCcc-chHHHHHHH----cC---CHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccC
Confidence 7778 888888888 88 888888888876 67778888888888888888888888888888777 7778888
Q ss_pred CChHHHHHHHcCCHHHHHHH
Q 006942 106 GFLPVHDAALYGHKDTFHYL 125 (624)
Q Consensus 106 G~TPLh~Aa~~g~~~iv~~L 125 (624)
|.||||+|+..|+.+++++|
T Consensus 90 g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 90 GKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp SCCHHHHHHHHTCHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHh
Confidence 88888888888888888876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.68 E-value=1.4e-16 Score=135.24 Aligned_cols=95 Identities=22% Similarity=0.223 Sum_probs=84.4
Q ss_pred hhhccCCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCccccCCCCCc
Q 006942 63 ETLARQDNHGHTAATLSAAKGNLRALKLLVKYNPDLTNIRHGEGFLPVHDAALYGHKDTFHYLLEVTHGVDIYSGKDGAN 142 (624)
Q Consensus 63 ~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t 142 (624)
......|.+|.||||+||..|+.+++++|++.+++ ++.+|..|.||||+||..|+.+++++|++++++.+. +|..|.|
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~t 92 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKT 92 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCC
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cccCCCc
Confidence 34567789999999999999999999999999887 788999999999999999999999999999999888 8999999
Q ss_pred HHHHHHHhCcHHHHHHH
Q 006942 143 VLSFLIAANLYDVALDL 159 (624)
Q Consensus 143 ~Lh~A~~~~~~~~v~~L 159 (624)
|||+|+..|+.++++.|
T Consensus 93 pl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHh
Confidence 99999999999999876
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=44.66 E-value=1.3e+02 Score=29.57 Aligned_cols=261 Identities=11% Similarity=0.074 Sum_probs=140.9
Q ss_pred CCCCCchHHHHHHhhhhhcCCcchHHHHHHHHHccCchh-hccCCCCCChHHHHHHHcCCHHHHHHHHhc-CCCCcc-cC
Q 006942 26 VEPGSMTIFHMIVELLIDAESDEAICLLDKLASKVDPET-LARQDNHGHTAATLSAAKGNLRALKLLVKY-NPDLTN-IR 102 (624)
Q Consensus 26 ~~~g~~T~Lh~Aa~~~~~~g~~~~~~iv~~Ll~~~~~~~-~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~-~~~l~~-~~ 102 (624)
|.+| .-.|..... .+ ..+-.+.+.+...+.. -=..|..|+..+--....|+.+....+++. .+.+.. ..
T Consensus 34 dq~g-sR~lQ~~l~----~~---~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~ 105 (351)
T 3gvo_A 34 DQHG-SRFIQQKLE----RA---TPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLAL 105 (351)
T ss_dssp SHHH-HHHHHHHHH----HC---CHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHT
T ss_pred CCcc-hHHHHHHHh----hC---CHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhh
Confidence 5556 556666666 66 4444444443322222 124677788777777777777766666655 333222 35
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHhcCCCc--cccCCCCCcHHHHHHHhCcHHHHHHHHHhCCCCCcccCCCCCCHHHH
Q 006942 103 HGEGFLPVHDAALYGHKDTFHYLLEVTHGVD--IYSGKDGANVLSFLIAANLYDVALDLLKRHPTIGRDSIDSRRIILNT 180 (624)
Q Consensus 103 n~~G~TPLh~Aa~~g~~~iv~~Ll~~~~~~~--~~~~~~G~t~Lh~A~~~~~~~~v~~Ll~~~~~l~~~~d~~G~TpLh~ 180 (624)
+..|.-.+.-+......+-...+++.-.... ...|..|...+..+...+..+....+++.-..- ...+
T Consensus 106 ~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~----------~~~l 175 (351)
T 3gvo_A 106 QMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQ----------VFVL 175 (351)
T ss_dssp STTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTT----------HHHH
T ss_pred CHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHH----------HHHH
Confidence 6777777777777766655444444322211 117888888888777766665555566542210 1111
Q ss_pred HHcCCCCCCCCCcchhhhhhhhccccccccccCCcccCCCCCCCCcchhhhhhhcccCcccccCCCCcchhhhhhhhhHH
Q 006942 181 LAQKPYAFASGSRLGRLQRLIYNCIPVEKELVPSIQTNDYHDLDGDIESFIVTSKIHSKESTRFGSTQQITTTFGAMLHK 260 (624)
Q Consensus 181 Aa~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (624)
+. +.. |+ ..+++++..+..
T Consensus 176 s~-~~~----G~--~Vvq~~le~~~~------------------------------------------------------ 194 (351)
T 3gvo_A 176 ST-HPY----GC--RVIQRILEHCTA------------------------------------------------------ 194 (351)
T ss_dssp HT-STT----HH--HHHHHHHHHSCH------------------------------------------------------
T ss_pred Hh-CcH----hH--HHHHHHHHHCCH------------------------------------------------------
Confidence 11 100 00 112222222110
Q ss_pred HHHHhhhccCCCCCCccchHhhhhhhhhHHHHHHHHHhhcccccccCCccccHHHHHHHHcCCHHHHHHHHHccCCCcee
Q 006942 261 LHRMLWNAXMHLSPGIKGIHDQKLTHMRTVEIVRIICEGVVWTNFQNSAQLSVAMLAAAILGIPEVVNEFIMAYDSSSNW 340 (624)
Q Consensus 261 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~lL~~l~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~d~~~ 340 (624)
.....++..+.+... .+..|..|+.-+......|..+..+.+++...+....
T Consensus 195 --------------------------~~~~~ii~~l~~~~~--~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~ 246 (351)
T 3gvo_A 195 --------------------------EQTLPILEELHQHTE--QLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLA 246 (351)
T ss_dssp --------------------------HHHHHHHHHHHTTHH--HHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHH
T ss_pred --------------------------HHHHHHHHHHhhhHH--hcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHH
Confidence 001122222222222 2236778888888888888877777777663445544
Q ss_pred c--CCCCCcHHHHHHHcCChh----HHHHHhcCCc-c--ccccccccCCCCchhhhhhhcCC
Q 006942 341 S--NQDGHTIFDHAVLYRREK----VFNLIQGVNF-T--TFLFSSRDKAGNNILHLAGRLVP 393 (624)
Q Consensus 341 ~--d~~G~T~Lh~A~~~~~~~----iv~~Ll~~~~-~--~~~vn~~D~~GnTpLHlAa~~~~ 393 (624)
. ++.|...+..+...+..+ +++.++...+ . ....=.+|..||-.+..+...+.
T Consensus 247 Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~ 308 (351)
T 3gvo_A 247 LSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAE 308 (351)
T ss_dssp HHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCC
T ss_pred HhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCC
Confidence 4 788888888888877665 4444443210 0 00112567888888888776665
No 116
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=26.91 E-value=1.4e+02 Score=29.60 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 006942 542 ITLFFSIASMMVAFGATVHIS 562 (624)
Q Consensus 542 ~~l~~s~~~m~~af~~~~~~v 562 (624)
.+..+++++|..+|++|+|-+
T Consensus 305 ~LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHHhhhcc
Confidence 456788899999999999876
No 117
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=26.37 E-value=2.2e+02 Score=27.80 Aligned_cols=21 Identities=5% Similarity=-0.118 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 006942 542 ITLFFSIASMMVAFGATVHIS 562 (624)
Q Consensus 542 ~~l~~s~~~m~~af~~~~~~v 562 (624)
.+..++++++..+|++|+|-+
T Consensus 281 ~LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 456788889999999999976
No 118
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=20.45 E-value=64 Score=20.26 Aligned_cols=20 Identities=30% Similarity=0.101 Sum_probs=16.2
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 006942 313 VAMLAAAILGIPEVVNEFIM 332 (624)
Q Consensus 313 tpLh~Aa~~g~~~iv~~Ll~ 332 (624)
.-+..||+.|+.+.++.|=.
T Consensus 15 QqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 15 KQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHH
Confidence 45788999999999988743
Done!