Your job contains 1 sequence.
>006943
MGDSGKRYRSQRDNDRDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVIN
SIRQETRARVKVVDPFPGAKDRVVTIYSHVKDKEDVEVDDEFNDKEPLCAAQDALLKVHA
AIANAVANATDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDA
SEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMYKFSPREDIPLETTVREAPPSIIIP
SDVPIYPPGGLYPNADPILPSRSVPSILGAARVPDLQGYADTGNTWPVYSTGLSLVSGLV
GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAI
ESPDDIKSMAVEAVLLLQTKINDEDDDTVTIRLLVSSKVIGCIIGKSGSIINEIRKRTKA
DVRISKGDKPKCADANDELVEVVGEVGSVRDALVQIILRLRDDALKDRDGSRNPPVGADH
IYSSGTGISMPPLLPSIPPVGPLGYDQRADSGSGIGMLSSSSLYGYGSLSMGDSPYGSMS
SYSSKLYGGLPPPLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRV
ALISGTPEQKRAAENLIQAFIMAT
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006943
(624 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 1137 8.2e-138 2
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 1012 5.8e-122 2
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 294 6.1e-43 2
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 278 1.8e-39 2
TAIR|locus:2168367 - symbol:RCF3 "AT5G53060" species:3702... 212 2.9e-35 3
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 193 1.9e-32 4
TAIR|locus:2084908 - symbol:FLK "AT3G04610" species:3702 ... 198 4.8e-19 2
TAIR|locus:2066020 - symbol:AT2G22600 "AT2G22600" species... 147 1.6e-17 3
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 122 3.7e-14 3
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 135 5.7e-14 3
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 109 8.4e-14 3
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 141 1.1e-13 3
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 135 1.2e-13 3
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 122 1.4e-13 3
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 112 1.9e-13 3
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 122 2.6e-13 3
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 122 2.6e-13 3
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 149 2.8e-13 3
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 135 3.0e-13 3
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 135 3.0e-13 3
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 112 3.2e-13 3
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 112 3.4e-13 3
ZFIN|ZDB-GENE-040426-1923 - symbol:hnrpkl "heterogeneous ... 118 6.1e-13 3
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 112 7.0e-13 3
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 102 8.7e-13 3
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 101 1.0e-12 3
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 119 1.1e-12 3
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 109 1.3e-12 3
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 136 2.1e-12 3
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 112 2.7e-12 3
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 112 2.7e-12 3
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 112 2.7e-12 3
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 112 2.7e-12 3
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 112 2.7e-12 3
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 112 2.7e-12 3
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 102 3.5e-12 3
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 100 6.0e-12 3
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 100 6.0e-12 3
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 100 6.0e-12 3
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 100 6.0e-12 3
UNIPROTKB|E1BKJ7 - symbol:IGF2BP1 "Uncharacterized protei... 108 8.4e-12 3
UNIPROTKB|E2RTC5 - symbol:IGF2BP1 "Uncharacterized protei... 108 8.4e-12 3
UNIPROTKB|Q9NZI8 - symbol:IGF2BP1 "Insulin-like growth fa... 108 8.4e-12 3
UNIPROTKB|I3L9X2 - symbol:IGF2BP1 "Uncharacterized protei... 108 8.4e-12 3
UNIPROTKB|F1LMZ7 - symbol:Nova1 "RNA-binding protein Nova... 103 8.7e-12 3
RGD|621345 - symbol:Nova1 "neuro-oncological ventral anti... 103 8.7e-12 3
RGD|708580 - symbol:Igf2bp1 "insulin-like growth factor 2... 107 1.1e-11 3
UNIPROTKB|G3X7R5 - symbol:NOVA1 "Uncharacterized protein"... 103 1.1e-11 3
UNIPROTKB|J9NXS6 - symbol:NOVA1 "Uncharacterized protein"... 103 1.1e-11 3
MGI|MGI:104297 - symbol:Nova1 "neuro-oncological ventral ... 103 1.1e-11 3
UNIPROTKB|D4AAF8 - symbol:Nova1 "RNA-binding protein Nova... 103 1.1e-11 3
UNIPROTKB|D3DS81 - symbol:NOVA1 "Neuro-oncological ventra... 102 1.2e-11 3
UNIPROTKB|H9L242 - symbol:HNRPK "Uncharacterized protein"... 106 1.3e-11 3
UNIPROTKB|O73932 - symbol:igf2bp3-a "Insulin-like growth ... 102 1.3e-11 3
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 111 1.5e-11 3
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 111 1.5e-11 3
UNIPROTKB|H9L0I0 - symbol:HNRPK "Uncharacterized protein"... 105 1.7e-11 3
MGI|MGI:1890357 - symbol:Igf2bp1 "insulin-like growth fac... 107 1.7e-11 3
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 132 2.0e-11 3
UNIPROTKB|I3LQS0 - symbol:HNRNPK "Uncharacterized protein... 106 2.5e-11 3
UNIPROTKB|Q3T0D0 - symbol:HNRNPK "Heterogeneous nuclear r... 108 2.8e-11 3
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 111 2.9e-11 3
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 111 2.9e-11 3
RGD|1305614 - symbol:Igf2bp2 "insulin-like growth factor ... 105 3.1e-11 3
MGI|MGI:1890358 - symbol:Igf2bp2 "insulin-like growth fac... 105 3.1e-11 3
TAIR|locus:2056951 - symbol:AT2G03110 "AT2G03110" species... 162 3.8e-11 1
TAIR|locus:2120755 - symbol:PEP "AT4G26000" species:3702 ... 167 4.2e-11 2
UNIPROTKB|E1C453 - symbol:HNRNPK "Heterogeneous nuclear r... 106 4.2e-11 3
UNIPROTKB|Q5ZIQ3 - symbol:HNRNPK "Heterogeneous nuclear r... 106 4.2e-11 3
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 111 5.3e-11 3
UNIPROTKB|P51513 - symbol:NOVA1 "RNA-binding protein Nova... 102 6.0e-11 3
UNIPROTKB|Q9UNW9 - symbol:NOVA2 "RNA-binding protein Nova... 144 6.3e-11 2
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 106 7.0e-11 3
UNIPROTKB|P61978 - symbol:HNRNPK "Heterogeneous nuclear r... 106 7.5e-11 3
MGI|MGI:99894 - symbol:Hnrnpk "heterogeneous nuclear ribo... 106 7.5e-11 3
RGD|71058 - symbol:Hnrnpk "heterogeneous nuclear ribonucl... 106 7.5e-11 3
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 119 8.5e-11 3
UNIPROTKB|F1RM28 - symbol:NOVA2 "Uncharacterized protein"... 144 9.2e-11 2
UNIPROTKB|Q5ZLP8 - symbol:IGF2BP3 "Insulin-like growth fa... 95 9.3e-11 3
UNIPROTKB|O42254 - symbol:IGF2BP1 "Insulin-like growth fa... 103 9.5e-11 3
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 106 1.3e-10 3
UNIPROTKB|F1MPB2 - symbol:IGF2BP3 "Uncharacterized protei... 96 1.4e-10 3
ZFIN|ZDB-GENE-000308-1 - symbol:igf2bp3 "insulin-like gro... 95 1.5e-10 3
UNIPROTKB|O57526 - symbol:igf2bp3-b "Insulin-like growth ... 96 1.5e-10 3
RGD|1308032 - symbol:Nova2 "neuro-oncological ventral ant... 141 1.6e-10 2
ZFIN|ZDB-GENE-030131-4357 - symbol:khsrp "KH-type splicin... 102 1.7e-10 4
MGI|MGI:1890359 - symbol:Igf2bp3 "insulin-like growth fac... 95 1.8e-10 3
UNIPROTKB|J9P8W9 - symbol:IGF2BP3 "Uncharacterized protei... 95 1.8e-10 3
UNIPROTKB|O00425 - symbol:IGF2BP3 "Insulin-like growth fa... 95 1.8e-10 3
ZFIN|ZDB-GENE-060526-113 - symbol:nova1 "neuro-oncologica... 95 2.0e-10 3
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 106 2.6e-10 3
UNIPROTKB|E2RJ54 - symbol:E2RJ54 "Uncharacterized protein... 100 2.8e-10 3
FB|FBgn0262735 - symbol:Imp "IGF-II mRNA-binding protein"... 99 3.5e-10 3
UNIPROTKB|F1MS84 - symbol:NOVA2 "Uncharacterized protein"... 136 4.1e-10 2
UNIPROTKB|E2RA50 - symbol:E2RA50 "Uncharacterized protein... 106 4.9e-10 3
CGD|CAL0000592 - symbol:orf19.5627 species:5476 "Candida ... 122 5.0e-10 2
UNIPROTKB|F1PUD6 - symbol:NOVA2 "Uncharacterized protein"... 136 5.2e-10 2
WB|WBGene00017816 - symbol:F26B1.2b species:6239 "Caenorh... 120 8.6e-10 3
UNIPROTKB|P91277 - symbol:F26B1.2 "Protein F26B1.2, isofo... 120 8.6e-10 3
TAIR|locus:2184362 - symbol:BTR1L "AT5G04430" species:370... 91 1.8e-09 3
WARNING: Descriptions of 148 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 1137 (405.3 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
Identities = 254/505 (50%), Positives = 328/505 (64%)
Query: 1 MGDSGKRYRSQ-RDNDRDG-KNQKRRIN-EKDEK--GNEES--VIYRILCPDGVIGSVIG 53
M + GKR ++ RDN+ D +NQ+RR++ E +EK N++ V+YRILCP GV+GSVIG
Sbjct: 1 MVERGKRTHNRFRDNNNDNNRNQRRRLSYESEEKKIDNKDDLVVVYRILCPSGVMGSVIG 60
Query: 54 KSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHXXXXXXXXXXXXXXX--XXPLCAA 111
KSGKVIN IRQETRAR+KVVDPFPG +RV+TI+ PLC+A
Sbjct: 61 KSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIVDIEYSELDYSVPLCSA 120
Query: 112 QDALLKVHXXXXXXXXXXTDNDK-KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTR 170
Q ALLKVH +N K R + EC++LVPSSQ + +IGK+G+ IK +R +TR
Sbjct: 121 QAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIVIGKSGSIIKNIRGRTR 180
Query: 171 TSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMYKFSPREDIPLETTV 230
++KV KD S+P+H+CAM+FDN V+ISGE+E+VKKALFA+SAIMYK SPRE IPL+TTV
Sbjct: 181 ANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSAIMYKVSPREQIPLDTTV 240
Query: 231 REAXXXXXXXXXXXXXXXGGLYPNADPILP-SRSVPSILGAARVPDLQGYADTG-NTWPV 288
+E GLYP+ D I +V S +G +P QGY + N PV
Sbjct: 241 QEVPASIIIPSDLSIYPQAGLYPSQDSIFQHGANVSSFIGT--LP--QGYGENAANPVPV 296
Query: 289 YS-TGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTK 347
+S + L +V G G+S+SE+L I+V+C +KIGRVIGKGG TIK IRQASG+ I+V+D++
Sbjct: 297 FSASALPVVHGFGGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSR 356
Query: 348 DNRDE-CVITVTAIESPDDIKSMAVEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXX 406
N D+ CVITVTA ESPDD+KSMAVEAVLLLQ KINDED+D V ++LLV
Sbjct: 357 TNHDDDCVITVTATESPDDLKSMAVEAVLLLQEKINDEDEDKVKMQLLVSSKVIGCIIGK 416
Query: 407 XXXXXNEIRKRTKADVRISKGDK-PKCADANDELXXXXXXXXXXRDALVQIIXXXXXXXX 465
+EIRKRTKAD+ ISKG+ PKCAD NDEL RDAL+QI+
Sbjct: 417 SGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVL 476
Query: 466 XXX-XGSRN-PPVGADH--IYSSGT 486
GSRN PP +++ +SS +
Sbjct: 477 RDRETGSRNQPPARSENNNFFSSSS 501
Score = 233 (87.1 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
Identities = 48/63 (76%), Positives = 54/63 (85%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
ANAVGKV+G+ G NL NIR+ISGA IE+SDSK+S G RVALISGT EQKR AENL QAFI
Sbjct: 582 ANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAENLFQAFI 641
Query: 622 MAT 624
M+T
Sbjct: 642 MST 644
Score = 124 (48.7 bits), Expect = 0.00023, P = 0.00023
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 276 LQGYAD--TGNTWPVYSTGLSLVSGLVGA-SQSEELVIRVLCPFNKIGRVIGKGGGTIKS 332
+ GY GNT Y + S S L G QS + +R+ P N +G+V+G+GGG + +
Sbjct: 543 IYGYGSFPVGNT--SYGSNSSYSSNLYGGLPQSTTMEVRI--PANAVGKVMGRGGGNLDN 598
Query: 333 IRQASGAQIDVDDTKDN 349
IR+ SGA I++ D+K++
Sbjct: 599 IRRISGAMIEISDSKNS 615
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 1012 (361.3 bits), Expect = 5.8e-122, Sum P(2) = 5.8e-122
Identities = 233/497 (46%), Positives = 298/497 (59%)
Query: 1 MGDSGKRYRSQRDNDRDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVIN 60
M + KR + QR+N +NQKRRI+ D+ +E V+YRILCP V+G VIGKSGKVIN
Sbjct: 1 MVERKKRKQIQRNNSESNRNQKRRISH-DKINRDELVVYRILCPIDVVGGVIGKSGKVIN 59
Query: 61 SIRQETRARVKVVDPFPGAKDRVVTIYSHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHX 120
+IR T+A++KV D G RV+TIY PLC AQDALLKV+
Sbjct: 60 AIRHNTKAKIKVFDQLHGCSQRVITIYC-SVKEKQEEIGFTKSENEPLCCAQDALLKVYD 118
Query: 121 XXXXXXXXX-TDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
T + R + +EC++LVP SQS+++IGKAG IKR+R +TR S+KV KD
Sbjct: 119 AIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKD 178
Query: 180 ASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMYKFSPREDIPLETTVRE---AXXX 236
S+P+H CAME+DN V+ISGE E+VK+ALFA+SAIMYK +PRE+IPL++T ++ A
Sbjct: 179 VSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKINPRENIPLDSTSQDVPAASVI 238
Query: 237 XXXXXXXXXXXXGGLYPNADPILPSRS-VPSILGAARVPDLQGYADTG-NTWPVYSTGLS 294
G Y N D IL + VPS A V D QGYA+T N PV+++ L
Sbjct: 239 VPSDLSNSVYPQTGFYSNQDHILQQGAGVPSYFNALSVSDFQGYAETAANPVPVFASSLP 298
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDD--TKDNRDE 352
+ G G+S+SEELV +VLCP I RVIGKGG TIK IR+ASG+ I+V+D TK DE
Sbjct: 299 VTHGFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDE 358
Query: 353 CVITVTAIESPDDIKSMAVEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXN 412
CVI VTA ESPDD+KSMAVEAVLLLQ INDED + V ++LLV N
Sbjct: 359 CVIIVTATESPDDMKSMAVEAVLLLQEYINDEDAENVKMQLLVSSKVIGCVIGKSGSVIN 418
Query: 413 EIRKRTKADVRISKGDKPKCADANDELXXXXXXXXXXRDALVQIIXXXXXXXXXX--XXG 470
EIRKRT A++ ISKG K D+L RDAL+QI+
Sbjct: 419 EIRKRTNANICISKGKK-------DDLVEVSGEVSSVRDALIQIVLRLREDVLGDKDSVA 471
Query: 471 SRNPPVGADHI-YSSGT 486
+R PP D+ + SG+
Sbjct: 472 TRKPPARTDNCSFLSGS 488
Score = 208 (78.3 bits), Expect = 5.8e-122, Sum P(2) = 5.8e-122
Identities = 41/63 (65%), Positives = 52/63 (82%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
A+A+ KV+GK G NL NIR+ISGA IE+S SK+S GD +AL+SGT EQ R AENL+QAF+
Sbjct: 544 AHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMRCAENLVQAFV 603
Query: 622 MAT 624
M+T
Sbjct: 604 MST 606
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 294 (108.6 bits), Expect = 6.1e-43, Sum P(2) = 6.1e-43
Identities = 69/214 (32%), Positives = 116/214 (54%)
Query: 6 KRYRSQRDNDRDGKNQKR-RINEKDEKG-NEESVIYRILCPDGVIGSVIGKSGKVINSIR 63
KR R Q D D +G +++R R +++D + + ++R LCP IGSVIG+ G ++ +R
Sbjct: 17 KRSRPQSDYDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIVKQLR 76
Query: 64 QETRARVKVVDPFPGAKDRVVTIYSHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXX 123
+TR+++++ + PG +RV+TIYS L AQDAL ++H
Sbjct: 77 NDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGEKV-----LSPAQDALFRIHDRVV 131
Query: 124 XXXXXXTDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
D+ + K+ ++LVPS Q I+G+ G ++ +RS+T I++ KD + P
Sbjct: 132 ADDARSEDSPEGEKQVT-AKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIV-KDRNMP 189
Query: 184 THSCAMEFDNFVLISGESEAVKKALFAISAIMYK 217
CA+ D + ISGE VKKAL I++ +++
Sbjct: 190 L--CALNSDELIQISGEVLIVKKALLQIASRLHE 221
Score = 224 (83.9 bits), Expect = 6.1e-43, Sum P(2) = 6.1e-43
Identities = 69/216 (31%), Positives = 103/216 (47%)
Query: 249 GGLYPNADPILPSRSVPSILGAARVPDLQGYADTGNTW--PVYSTGLSLVSGLVGASQSE 306
GG YP A ++ P ++G A P + Y W P+Y + +
Sbjct: 234 GG-YP-AGSLMSHAGGPRLVGLA--PLMGSYGRDAGDWSRPLYQPPRN-------DPPAT 282
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
E IR++ P I VIGKGG I +RQ + A I VD ++ ++C+IT++A E +D
Sbjct: 283 EFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDA 342
Query: 367 KSMAVEAVLLLQTKINDE---DDDTV--TIRLLVXXXXXXXXXXXXXXXXNEIRKRTKAD 421
S +EAV+ LQ K +D+ D V T RLLV E+R+ TKA+
Sbjct: 343 YSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKAN 402
Query: 422 VRI-SKGDKPKCADANDELXXXXXXXXXXRDALVQI 456
+RI K + PK A +DE+ ++AL+QI
Sbjct: 403 IRILGKENLPKVASDDDEMVQISGELDVAKEALIQI 438
Score = 119 (46.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 39/137 (28%), Positives = 62/137 (45%)
Query: 306 EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITV-------T 358
++ V R LCP KIG VIG+GG +K +R + ++I + + DE VIT+
Sbjct: 48 DDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETN 107
Query: 359 AIESPDDIKSMAVEAVLLLQTKINDED---DDT------VTIRLLVXXXXXXXXXXXXXX 409
A + + S A +A+ + ++ +D +D+ VT +LLV
Sbjct: 108 AFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQ 167
Query: 410 XXNEIRKRTKADVRISK 426
IR T A +RI K
Sbjct: 168 IVQNIRSETGAQIRIVK 184
Score = 109 (43.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++LVPSS+ I+GK GA I +R T+ +I++ K+ + P A + D V ISGE +
Sbjct: 373 RLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKE-NLP--KVASDDDEMVQISGELD 429
Query: 203 AVKKALFAISA 213
K+AL I++
Sbjct: 430 VAKEALIQITS 440
Score = 97 (39.2 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
R++ P I SVIGK G +IN +RQETRA +KV D ++TI
Sbjct: 287 RLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITI 333
Score = 61 (26.5 bits), Expect = 7.5e-26, Sum P(2) = 7.5e-26
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+ VIGK G+ + +R+ + ATI++ S++ D + IS + A I+A
Sbjct: 295 IASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTIEA 349
Score = 55 (24.4 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKS-----SRGDRVALISGTPEQKRAAENL 616
++ +G ++GK G+ + +R+++ A I + ++ S D + ISG E A E L
Sbjct: 378 SSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISG--ELDVAKEAL 435
Query: 617 IQ 618
IQ
Sbjct: 436 IQ 437
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 278 (102.9 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 69/218 (31%), Positives = 113/218 (51%)
Query: 5 GKRYRSQRDNDRDGKNQKRRINEKDEKG--NEESVIYRILCPDGVIGSVIGKSGKVINSI 62
GKR Q + +G +++R ++++ ++ E +YR LCP GS+IGK G++ I
Sbjct: 10 GKRSNLQSEFTGNGGSKRRNLHDETDQNVIASEDTVYRYLCPVKKTGSIIGKGGEIAKQI 69
Query: 63 RQETRARVKVVDPFPGAKDRVVTIYSHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXX 122
R ET++ +++ + PG ++RVVT+YS +C A DAL KVH
Sbjct: 70 RSETKSNMRINEALPGCEERVVTMYSTNEELNHFGDDGEL-----VCPALDALFKVHDMV 124
Query: 123 XXXXXXX--TDNDKKRKEKEECQI--LVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPK 178
TD+D EK+ + LVPS Q +IGK G I+ LR+ T I+V K
Sbjct: 125 VADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVI-K 183
Query: 179 DASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMY 216
D P + + D +LI GE V++AL+ ++++++
Sbjct: 184 DHL-PACALTLSHDELLLIIGEPLVVREALYQVASLLH 220
Score = 206 (77.6 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 52/161 (32%), Positives = 84/161 (52%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIES 362
+ + E + +CP +G VIGKGGG I IRQ +GA I V+ ++ + D+C+I +++ E
Sbjct: 264 ADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEF 323
Query: 363 PDDIKSMAVEAVLLLQTKIN-----DEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKR 417
+D +S AV A + LQ + + D +D ++ RLLV +E+R
Sbjct: 324 YED-QSPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSV 382
Query: 418 TKADVRI-SKGDKPKCADANDELXXXXXXXXXXRDALVQII 457
T+A++RI K D PK A ++E+ AL Q+I
Sbjct: 383 TRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVI 423
Score = 106 (42.4 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++LV SSQ +IGK GA I +RS TR +I++ K E A E + V I+G +
Sbjct: 357 RLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQK---EDVPKIAREDEEMVQITGSPD 413
Query: 203 AVKKAL 208
A KAL
Sbjct: 414 AAMKAL 419
Score = 100 (40.3 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITV 357
SE+ V R LCP K G +IGKGG K IR + + + +++ +E V+T+
Sbjct: 41 SEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTM 93
Score = 100 (40.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 304 QSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
+ + + +R+L P ++IG VIGKGG I+++R + AQI V KD+ C +T++
Sbjct: 142 EKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRV--IKDHLPACALTLS 194
Score = 86 (35.3 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 42 LCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
+CP +G VIGK G IN IRQET A ++V
Sbjct: 274 ICPAENVGGVIGKGGGFINQIRQETGATIRV 304
Score = 76 (31.8 bits), Expect = 7.6e-26, Sum P(2) = 7.6e-26
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALIS 604
A VG VIGK G + IR+ +GATI ++ S++ D + IS
Sbjct: 277 AENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFIS 319
Score = 75 (31.5 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 24/81 (29%), Positives = 35/81 (43%)
Query: 383 DEDDD-----TVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVRISKGDKPKCAD--A 435
D+D+D TVT+R+LV +R T A +R+ K P CA +
Sbjct: 135 DDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLS 194
Query: 436 NDELXXXXXXXXXXRDALVQI 456
+DEL R+AL Q+
Sbjct: 195 HDELLLIIGEPLVVREALYQV 215
Score = 54 (24.1 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDS----KSSRGDR-VALISGTPE 608
++ +G +IGK G+ ++ +R ++ A I + K +R D + I+G+P+
Sbjct: 362 SSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPD 413
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 212 (79.7 bits), Expect = 2.9e-35, Sum P(3) = 2.9e-35
Identities = 56/175 (32%), Positives = 86/175 (49%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPD 364
SEELV ++LCP +KI RV+G+ G I ++ G + V D DE +IT+++ E+PD
Sbjct: 322 SEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPD 381
Query: 365 DIKSMAVEAVLLLQTKIND---EDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKAD 421
D A EA+L +QT+I D + D+ +T RLLV +EI + T
Sbjct: 382 DPFFPAQEALLHIQTQIIDLIPDKDNLITTRLLVPSRDSICLEGKAGSV-SEISRLTGTS 440
Query: 422 VRI-SKGDKPKCADANDELXXXXXXXXXXRDALVQIIXXXXXXXXXXXXGSRNPP 475
V+I ++ + P+CA ND + R+ALV++ PP
Sbjct: 441 VQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHMFKELSQKETPP 495
Score = 184 (69.8 bits), Expect = 2.9e-35, Sum P(3) = 2.9e-35
Identities = 54/205 (26%), Positives = 94/205 (45%)
Query: 26 NEKDEKGNEESVI---YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
N + K + E++ YRILC D G VIGKSG +I SIRQ T A + V + PG +R
Sbjct: 54 NGRPSKSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAER 113
Query: 83 VVTIYSHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDND-----KKRK 137
++ I + L + D +L+ + + +
Sbjct: 114 IIEISDNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGG 173
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
+ +++V ++GK G I+++R +T+T I++ P++++ P C + V I
Sbjct: 174 GRVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPR--CVSLSEEIVQI 231
Query: 198 SGESEAVKKALFAISAIMYKFSPRE 222
GE AVK AL +S+ + + R+
Sbjct: 232 VGELNAVKNALAIVSSRLRESQHRD 256
Score = 105 (42.0 bits), Expect = 2.9e-35, Sum P(3) = 2.9e-35
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMA 623
V K++ K+ + LA I + SGA++ + + + + ISGTPEQ A++L+Q FI++
Sbjct: 588 VPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLLQGFILS 646
Score = 101 (40.6 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 9 RSQRDNDRDGKNQKRRINEKDEK-----GNE---ESVIYRILCPDGVIGSVIGKSGKVIN 60
R R N R+ R+ N +E G E ++++ILCP I V+G+S +I+
Sbjct: 289 RFPRGNFRNNNFSSRQSNYAEEAPAVPVGENVYSEELVFQILCPADKIVRVVGESQGIID 348
Query: 61 SIRQETRARVKVVDPFPGAKDRVVTIYS 88
++ E V+V DP G+ ++++TI S
Sbjct: 349 LLQNEIGVDVRVSDPVAGSDEQIITISS 376
Score = 93 (37.8 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 42/243 (17%), Positives = 98/243 (40%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++LVPS S + GKAG+ + + T TS+++ A E CA D + I+GE
Sbjct: 412 RLLVPSRDSICLEGKAGS-VSEISRLTGTSVQIL---AREEIPRCASINDVVIQITGEIR 467
Query: 203 AVKKALFAISAI----MYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPI 258
A ++AL ++ + M+K +++ P +T + P
Sbjct: 468 AAREALVELTLLLRSHMFKELSQKETPPASTSTTGPLEGVAGVMEVASSNNTIQSREGPT 527
Query: 259 LPSRSVPSILGAARVPDL-QGYADTGNTWPV-YSTGLSLVSGLVGASQSEELVIRVLCPF 316
+ ++ + + +P +G+ + + + + + + V+ P
Sbjct: 528 SSNLNLQQV--STILPQFKEGFGSVAKAGESEHREEVPVTTSRMAVPLVTRSTLEVVLPE 585
Query: 317 NKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAI-ESPDDIKSMAVEAVL 375
+ +++ K + I + SGA + + + + + +I ++ E + +S+ +L
Sbjct: 586 AVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLLQGFIL 645
Query: 376 LLQ 378
+Q
Sbjct: 646 SIQ 648
Score = 92 (37.4 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 311 RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
R+LC K G VIGK G IKSIRQ +GA I+V + E +I ++
Sbjct: 71 RILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEIS 118
Score = 38 (18.4 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALIS 604
A+ + +V+G++ + ++ G + +SD + +++ IS
Sbjct: 333 ADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITIS 375
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 193 (73.0 bits), Expect = 1.9e-32, Sum P(4) = 1.9e-32
Identities = 47/156 (30%), Positives = 80/156 (51%)
Query: 306 EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD 365
EE+ R+LCP +K+G +IGKGG +++++ SGA I V D + +E +I ++A E+ +
Sbjct: 274 EEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLER 333
Query: 366 IKSMAVEAVLLLQTKIND---EDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADV 422
S+A + V+ + +I + E V RLLV +E+R+ T A +
Sbjct: 334 RHSLAQDGVMRVHNRIVEIGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASI 393
Query: 423 RI-SKGDKPKCADANDELXXXXXXXXXXRDALVQII 457
R+ +K K +DE+ +DAL QI+
Sbjct: 394 RVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQIL 429
Score = 127 (49.8 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 22/53 (41%), Positives = 37/53 (69%)
Query: 34 EESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
EE V +R+LCP +GS+IGK G V+ +++ E+ A +KV DP +++R++ I
Sbjct: 273 EEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVI 325
Score = 110 (43.8 bits), Expect = 1.9e-32, Sum P(4) = 1.9e-32
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 35 ESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFP-GAKDRVVTI 86
ESV +R+LCP G++IGK G VI ++ T ++++V+D P +++RVV I
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLI 69
Score = 106 (42.4 bits), Expect = 1.9e-32, Sum P(4) = 1.9e-32
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
+G V G+ SNL I+++SGA + + D K+ + + ++SGT +Q A++L+ AFI+
Sbjct: 560 LGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHFAQSLLHAFIL 617
Score = 104 (41.7 bits), Expect = 1.9e-32, Sum P(4) = 1.9e-32
Identities = 29/106 (27%), Positives = 54/106 (50%)
Query: 110 AAQDALLKVHXXXXXXXXXXT-DNDKKRKEKEE--CQILVPSSQSANIIGKAGATIKRLR 166
+AQ ALL+V T D D+ K + E C+++V +Q ++ K G I+++R
Sbjct: 115 SAQMALLRVFERIVFGDDAATVDGDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIR 174
Query: 167 SKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAIS 212
+ ++++ D P CA D + ++G+ +VKKAL ++
Sbjct: 175 EDSGAIVRISSTDQIPP---CAFPGDVVIQMNGKFSSVKKALLLVT 217
Score = 102 (41.0 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTA 359
A+ +E + R+LCP + G +IGKGG I+ ++ +G++I V DD +E V+ + A
Sbjct: 13 ATAAESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIA 71
Score = 84 (34.6 bits), Expect = 3.6e-20, Sum P(4) = 3.6e-20
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 300 VGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV---DD-TK--DNRDEC 353
+G S +V R+L IGR++GKGG I +R+A+GA I V D TK DE
Sbjct: 352 IGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEI 411
Query: 354 VITVTAIESPDD 365
V + +++ D
Sbjct: 412 VQVIGNLKTVQD 423
Score = 84 (34.6 bits), Expect = 3.8e-18, Sum P(4) = 3.8e-18
Identities = 21/79 (26%), Positives = 42/79 (53%)
Query: 137 KEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVL 196
+E+ ++L P+ + ++IGK GA ++ L++++ SIKV S+PTH + ++
Sbjct: 273 EEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKV-----SDPTHDSE---ERIIV 324
Query: 197 ISGESEAVKKALFAISAIM 215
IS ++ A +M
Sbjct: 325 ISARENLERRHSLAQDGVM 343
Score = 84 (34.6 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++LV S ++GK G I +R T SI+V KD + S + D V + G +
Sbjct: 363 RLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYES---QHDEIVQVIGNLK 419
Query: 203 AVKKALFAI 211
V+ ALF I
Sbjct: 420 TVQDALFQI 428
Score = 79 (32.9 bits), Expect = 8.1e-13, Sum P(3) = 8.1e-13
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
A+ VG +IGK G+ + ++ SGA+I++SD +R+ +IS +R +L Q +
Sbjct: 284 ADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERR-HSLAQDGV 342
Query: 622 M 622
M
Sbjct: 343 M 343
Score = 75 (31.5 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 25/114 (21%), Positives = 46/114 (40%)
Query: 265 PSILGAARVPDLQGYADTGNTWPVYSTGLSLVSGLVGASQS--EELVIRVLCPFNKIGRV 322
PS + P + G+ G P + G +L + +G+ + ++ P +G V
Sbjct: 505 PSPMSWTPQPGIDGHPG-GMVPPDVNHGFALRNEPIGSENPVMTSANVEIVIPQAYLGHV 563
Query: 323 IGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLL 376
G+ + I+Q SGA + V D K E ++ V+ + A +L
Sbjct: 564 YGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHFAQSLLHAFIL 617
Score = 71 (30.1 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 288 VYSTGLSLVSG-LVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDT 346
V+ + V G + +SE L R++ N++ ++ KGG I+ IR+ SGA + + T
Sbjct: 128 VFGDDAATVDGDELDKGESEGLC-RMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISST 186
Query: 347 KDNRDECVITVTAIESPDDIKSMAVEAVLLLQTKINDE 384
D C + + K +V+ LLL T E
Sbjct: 187 -DQIPPCAFPGDVVIQMNG-KFSSVKKALLLVTNCLQE 222
Score = 69 (29.3 bits), Expect = 2.3e-21, Sum P(3) = 2.3e-21
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
E ++L P++++ IIGK G+ I+ L+S T + I+V
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRV 54
Score = 67 (28.6 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 30 EKGNEES--VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
E G E S V+ R+L IG ++GK G +I+ +R+ T A ++V
Sbjct: 351 EIGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRV 395
Score = 57 (25.1 bits), Expect = 3.9e-20, Sum P(3) = 3.9e-20
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV--VDPFP 77
+KG E + R++ + ++ K GK+I IR+++ A V++ D P
Sbjct: 142 DKGESEGLC-RMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIP 190
Score = 54 (24.1 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 8/25 (32%), Positives = 19/25 (76%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEM 589
+G+++GK G ++ +R+ +GA+I +
Sbjct: 371 IGRLLGKGGHLISEMRRATGASIRV 395
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 198 (74.8 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 60/200 (30%), Positives = 95/200 (47%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
EK G ++R+L P +GS+IG+ G VI I +ETRAR+K++D PG +R V +
Sbjct: 177 EKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMV 236
Query: 87 YSHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDNDKKRKEKEECQILV 146
L + D LL+VH + K ++LV
Sbjct: 237 SGKEEPESS------------LPPSMDGLLRVHMRIVDGLDGEA-SQAPPPSKVSTRLLV 283
Query: 147 PSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKK 206
P+SQ+ ++IGK G T+K ++ + ++V SE A++ D V + GE +V +
Sbjct: 284 PASQAGSLIGKQGGTVKAIQEASACIVRVL---GSEDLPVFALQDDRVVEVVGEPTSVHR 340
Query: 207 ALFAISAIMYKFS-PREDIP 225
AL I++ + KF R IP
Sbjct: 341 ALELIASHLRKFLVDRSIIP 360
Score = 106 (42.4 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
VIG +GSN++ R++SGAT+ + +++ G+ +SGT Q + A LIQ F+
Sbjct: 472 VIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFM 525
Score = 99 (39.9 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
E V R+L P K+G +IG+ G IK I + + A+I + D E + V+ E P+
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESS 245
Query: 367 KSMAVEAVLLLQTKIND 383
+++ +L + +I D
Sbjct: 246 LPPSMDGLLRVHMRIVD 262
Score = 91 (37.1 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 293 LSLVSGLVG-ASQS---EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+ +V GL G ASQ+ ++ R+L P ++ G +IGK GGT+K+I++AS + V ++D
Sbjct: 258 MRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSED 317
Score = 63 (27.2 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 21/86 (24%), Positives = 38/86 (44%)
Query: 277 QGYADTGNTWPVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQA 336
QG + G P+ + +S +V ++++ I P + VIG G I R+
Sbjct: 432 QGISAYGREPPM-NVHVSSAPPMVAQQVTQQMQI----PLSYADAVIGTSGSNISYTRRL 486
Query: 337 SGAQIDVDDTKDNRDECVITVTAIES 362
SGA + + +T+ E + V+ S
Sbjct: 487 SGATVTIQETRGVPGEMTVEVSGTGS 512
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 147 (56.8 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 53/210 (25%), Positives = 87/210 (41%)
Query: 34 EESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHXXXX 93
+E+ I R++C VIG +IG +G V++ +R+ET ++ P G+ VV I
Sbjct: 23 DETAI-RVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVN 81
Query: 94 XXXXXXXXXXXXXP-------LC---AAQDALLKVHXXXXXXXXXXTDNDKKRKEKEE-- 141
C AAQ AL++V E EE
Sbjct: 82 QSILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAY 141
Query: 142 CQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGES 201
C IL +Q ++G G ++ +R + I+V P P C + D + I+G+
Sbjct: 142 CGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP----PI--CGTKNDELIQITGDV 195
Query: 202 EAVKKALFAISAIMYKFSPREDIPLETTVR 231
AVKKAL +S+ + +P P +++
Sbjct: 196 LAVKKALVMVSSYIQNNAPLNGYPPPLSIK 225
Score = 108 (43.1 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
+A+G + G+ G+ + N+++ISGA +++ D + + LISG PEQ R A +LI++ +
Sbjct: 573 DALGSLYGRDGTGVDNLQQISGANVDVKDPTGT--EATVLISGNPEQARTAMSLIESIL 629
Score = 99 (39.9 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 32 GN--EESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
GN E V+++I+ V G +IGK G +I +++ ET A + V P + +RVVT+
Sbjct: 270 GNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTV 326
Score = 84 (34.6 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 306 EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD 365
+E IRV+C + IG +IG G + +R+ +G +I + + D V+ +
Sbjct: 23 DETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFI-------- 74
Query: 366 IKSMAVEAVLLLQTKIND----EDDDTVT 390
+ S AV +LL ++ + E +D VT
Sbjct: 75 VGSTAVNQSILLTDRVGEFSGGEHEDWVT 103
Score = 81 (33.6 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAI 360
G S ++V +++ G +IGK G I++++ +GA I V E V+TV+A
Sbjct: 270 GNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSAR 329
Query: 361 ESPDDIKSMAVEAVLLL 377
E+ + S A A+ L+
Sbjct: 330 ENLESRYSHAQNALALV 346
Score = 73 (30.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 298 GLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
G+V + EE +L N+IG V+G GG ++ +R+ SGA I V
Sbjct: 131 GVVDG-EDEEAYCGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRV 175
Score = 68 (29.0 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 32 GNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDP-FPGAK-DRVVTI 86
G +E IL IG+V+G GK + +R+ + A ++V+ P G K D ++ I
Sbjct: 135 GEDEEAYCGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPPPICGTKNDELIQI 191
Score = 60 (26.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 15/59 (25%), Positives = 34/59 (57%)
Query: 319 IGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKS-MA-VEAVL 375
+G + G+ G + +++Q SGA +DV D E + ++ +P+ ++ M+ +E++L
Sbjct: 575 LGSLYGRDGTGVDNLQQISGANVDVKDPTGT--EATVLISG--NPEQARTAMSLIESIL 629
Score = 60 (26.2 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 131 DNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
D + K +I+ S + IIGK G I+ L+++T SI V
Sbjct: 268 DGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISV 312
Score = 56 (24.8 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALIS 604
G +IGK G+ + ++ +GA+I + G+RV +S
Sbjct: 289 GGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVS 327
Score = 48 (22.0 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 567 KVIGKAGSNLANIRKISGA-----TIEMSDSKSSRGDRVALISGTPEQK 610
KV+G+ + ++N + +G ++ S +SRGD +++ + P+ K
Sbjct: 446 KVLGEMRARVSNPYESAGGRSQIYNLQPSQQDASRGDSLSVSAAVPDLK 494
Score = 44 (20.5 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 414 IRKRTKADVRISKGDKPKCADANDELXXXXXXXXXXRDALVQI 456
+R+ + A +R+ P C NDEL + ALV +
Sbjct: 165 MRRNSGAMIRVLP--PPICGTKNDELIQITGDVLAVKKALVMV 205
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 122 (48.0 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 40/129 (31%), Positives = 64/129 (49%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD-- 365
L IR+L ++G +IGK G T+K +R+ SGA+I++ + N E ++T+T P D
Sbjct: 22 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITG---PTDAI 76
Query: 366 IKSMAVEAVLLLQTKINDEDDDT------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
K+ A+ A + IN + VT+RL+V EIR+ T
Sbjct: 77 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 136
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 137 AQVQVA-GD 144
Score = 109 (43.4 bits), Expect = 3.7e-14, Sum P(3) = 3.7e-14
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E +T++
Sbjct: 100 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG- 158
Query: 361 ESPDDI 366
+PD I
Sbjct: 159 -TPDAI 163
Score = 95 (38.5 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R VTI
Sbjct: 106 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 156
Score = 94 (38.1 bits), Expect = 3.7e-14, Sum P(3) = 3.7e-14
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I+++++ +R I+GTP A+ LI A
Sbjct: 256 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 310
Score = 91 (37.1 bits), Expect = 3.7e-14, Sum P(3) = 3.7e-14
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 23 RRINEK-DEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKD 81
RR+ K E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +
Sbjct: 7 RRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPE 64
Query: 82 RVVTI 86
R+VTI
Sbjct: 65 RIVTI 69
Score = 86 (35.3 bits), Expect = 3.7e-10, Sum P(3) = 3.7e-10
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 297 SGLVGA--SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
SGL + + + EL I P + IG +IG+ G I IRQ SGAQI + + + E
Sbjct: 236 SGLDASPPASTHELTI----PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQ 291
Query: 355 ITVTAIESPDDIKSMA 370
IT+T +P +I S+A
Sbjct: 292 ITITG--TPANI-SLA 304
Score = 86 (35.3 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + IR+ +GA ++++ D + +R ISGTP+
Sbjct: 114 ASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 161
Score = 80 (33.2 bits), Expect = 4.9e-13, Sum P(3) = 4.9e-13
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I + SE +C + V I+G ++
Sbjct: 25 RLLMHGKEVGSIIGKKGETVKKMREESGARINI-----SEG--NCP---ERIVTITGPTD 74
Query: 203 AVKKALFAISAIMYKFSPREDI 224
A+ KA FA+ I YKF EDI
Sbjct: 75 AIFKA-FAM--IAYKFE--EDI 91
Score = 80 (33.2 bits), Expect = 5.3e-11, Sum P(3) = 5.3e-11
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G+ IK +R T ++V T + V ISG +
Sbjct: 109 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST-------ERAVTISGTPD 161
Query: 203 AVKKALFAISAIM 215
A+ + + I +M
Sbjct: 162 AIIQCVKQICVVM 174
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 135 (52.6 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 60/234 (25%), Positives = 99/234 (42%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G+ IK +R T ++V T + V ISG +
Sbjct: 133 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST-------ERAVTISGTPD 185
Query: 203 AVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGL-YPNADPILPS 261
A+ + + I +M + SP + + + A G P+ D +
Sbjct: 186 AIIQCVKQICVVMLE-SPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKL 244
Query: 262 RSVPSILGAARVPDL--QGYADTGNTWPVYST--GLSLVSGLVGASQSEELVIRVLC-PF 316
+ + P L A G P++S+ +L+ G S L P
Sbjct: 245 HQLA--MQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPN 302
Query: 317 NKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMA 370
+ IG +IG+ G I IRQ SGAQI + + + E IT+T +P +I S+A
Sbjct: 303 DLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITG--TPANI-SLA 353
Score = 122 (48.0 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 40/129 (31%), Positives = 64/129 (49%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD-- 365
L IR+L ++G +IGK G T+K +R+ SGA+I++ + N E ++T+T P D
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITG---PTDAI 100
Query: 366 IKSMAVEAVLLLQTKINDEDDDT------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
K+ A+ A + IN + VT+RL+V EIR+ T
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 161 AQVQVA-GD 168
Score = 110 (43.8 bits), Expect = 5.7e-14, Sum P(3) = 5.7e-14
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E +T++
Sbjct: 124 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG- 182
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
+PD I + V++L++
Sbjct: 183 -TPDAIIQCVKQICVVMLES 201
Score = 95 (38.5 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R VTI
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 180
Score = 94 (38.1 bits), Expect = 5.7e-14, Sum P(3) = 5.7e-14
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I+++++ +R I+GTP A+ LI A
Sbjct: 305 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 359
Score = 91 (37.1 bits), Expect = 5.7e-14, Sum P(3) = 5.7e-14
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 23 RRINEK-DEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKD 81
RR+ K E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +
Sbjct: 31 RRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPE 88
Query: 82 RVVTI 86
R+VTI
Sbjct: 89 RIVTI 93
Score = 86 (35.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + IR+ +GA ++++ D + +R ISGTP+
Sbjct: 138 ASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 185
Score = 80 (33.2 bits), Expect = 7.5e-13, Sum P(3) = 7.5e-13
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I + SE +C + V I+G ++
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINI-----SEG--NCP---ERIVTITGPTD 98
Query: 203 AVKKALFAISAIMYKFSPREDI 224
A+ KA FA+ I YKF EDI
Sbjct: 99 AIFKA-FAM--IAYKFE--EDI 115
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 109 (43.4 bits), Expect = 8.4e-14, Sum P(3) = 8.4e-14
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 131 DNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAME 190
D K K + +++VP+SQ ++IGK+G+ IK +R T SI+V ASE +
Sbjct: 94 DVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQV----ASEMLPNST-- 147
Query: 191 FDNFVLISGESEAVKKALFAISAIMYKFSPR 221
+ V +SG +E + + ++ I +M + PR
Sbjct: 148 -ERAVTLSGSAEQITQCIYQICLVMLESPPR 177
Score = 106 (42.4 bits), Expect = 8.4e-14, Sum P(3) = 8.4e-14
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRG---DRVALISGTPEQKRAAENLI 617
+G +IGK G+ +A IR+ISGA I +S+ + G DR ISG P+ A+ LI
Sbjct: 297 IGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLI 352
Score = 93 (37.8 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 300 VGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVT 358
VG ++ IR++ P ++ G +IGK G IK IRQ +G I V + N E +T++
Sbjct: 95 VGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLS 154
Query: 359 AIESPDDIKSMAVEAVLLL 377
S + I + L++
Sbjct: 155 G--SAEQITQCIYQICLVM 171
Score = 91 (37.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 33/137 (24%), Positives = 60/137 (43%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPD 364
S L IR++ ++G +IGK G + R+ SGA+I++ D + E ++TV+ +
Sbjct: 21 SVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD--GSCPERIVTVSGTTN-- 76
Query: 365 DIKSMAVEAVLLLQTKINDEDDDT-------VTIRLLVXXXXXXXXXXXXXXXXNEIRKR 417
A+ + L TK +E +D + IRL+V EIR+
Sbjct: 77 -----AIFSAFTLITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQT 131
Query: 418 TKADVRISKGDKPKCAD 434
T ++++ P +
Sbjct: 132 TGCSIQVASEMLPNSTE 148
Score = 89 (36.4 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 26 NEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVV 84
N+ + G + I R++ P GS+IGKSG I IRQ T ++V + P + +R V
Sbjct: 93 NDVGKVGKTQIPI-RLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAV 151
Query: 85 TI 86
T+
Sbjct: 152 TL 153
Score = 86 (35.3 bits), Expect = 8.4e-14, Sum P(3) = 8.4e-14
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
R++ +GS+IGK G+++N R+E+ A++ + D +R+VT+
Sbjct: 27 RLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTV 71
Score = 80 (33.2 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 319 IGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRD-ECVITVTAIESPDDI 366
IG +IGKGG I IRQ SGA I + + ++ T+T +PD +
Sbjct: 297 IGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSV 345
Score = 80 (33.2 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEM-SDSKSSRGDRVALISGTPEQ 609
A+ G +IGK+GS + IR+ +G +I++ S+ + +R +SG+ EQ
Sbjct: 111 ASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAEQ 159
Score = 59 (25.8 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++++ + +IIGK G + R R ++ I ++ D S P + V +SG +
Sbjct: 27 RLIMQGKEVGSIIGKKGEIVNRFREESGAKINIS--DGSCP--------ERIVTVSGTTN 76
Query: 203 AVKKALFAISAIMYKFSPREDI 224
A+ A F + I KF D+
Sbjct: 77 AIFSA-FTL--ITKKFEEFNDV 95
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 141 (54.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 63/238 (26%), Positives = 105/238 (44%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G+ IK +R T ++V T + V ISG +
Sbjct: 133 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST-------ERAVTISGTPD 185
Query: 203 AVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGL-YPNADPILPS 261
A+ + + I +M + SP + + + A G P+ D +
Sbjct: 186 AIIQCVKQICVVMLE-SPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKL 244
Query: 262 RSVPSILGAARVPDLQGYADTG--NTWP-----VYSTGLSLVSGLVGA--SQSEELVIRV 312
+ + P L G + T+P + S+ L +SGL + + + EL I
Sbjct: 245 HQLA--MQQTPFPPL-GQTNPAFPGTYPAALSDLLSSHLGTLSGLDASPPASTHELTI-- 299
Query: 313 LCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMA 370
P + IG +IG+ G I IRQ SGAQI + + + E IT+T +P +I S+A
Sbjct: 300 --PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITG--TPANI-SLA 352
Score = 122 (48.0 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 40/129 (31%), Positives = 64/129 (49%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD-- 365
L IR+L ++G +IGK G T+K +R+ SGA+I++ + N E ++T+T P D
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITG---PTDAI 100
Query: 366 IKSMAVEAVLLLQTKINDEDDDT------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
K+ A+ A + IN + VT+RL+V EIR+ T
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 161 AQVQVA-GD 168
Score = 110 (43.8 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E +T++
Sbjct: 124 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG- 182
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
+PD I + V++L++
Sbjct: 183 -TPDAIIQCVKQICVVMLES 201
Score = 95 (38.5 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R VTI
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 180
Score = 94 (38.1 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I+++++ +R I+GTP A+ LI A
Sbjct: 304 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 358
Score = 88 (36.0 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 23 RRINEK-DEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKD 81
R++ K E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +
Sbjct: 31 RKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPE 88
Query: 82 RVVTI 86
R+VTI
Sbjct: 89 RIVTI 93
Score = 86 (35.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + IR+ +GA ++++ D + +R ISGTP+
Sbjct: 138 ASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 185
Score = 80 (33.2 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I + SE +C + V I+G ++
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINI-----SEG--NCP---ERIVTITGPTD 98
Query: 203 AVKKALFAISAIMYKFSPREDI 224
A+ KA FA+ I YKF EDI
Sbjct: 99 AIFKA-FAM--IAYKFE--EDI 115
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 135 (52.6 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 60/234 (25%), Positives = 99/234 (42%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G+ IK +R T ++V T + V ISG +
Sbjct: 133 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST-------ERAVTISGTPD 185
Query: 203 AVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGL-YPNADPILPS 261
A+ + + I +M + SP + + + A G P+ D +
Sbjct: 186 AIIQCVKQICVVMLE-SPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKL 244
Query: 262 RSVPSILGAARVPDL--QGYADTGNTWPVYST--GLSLVSGLVGASQSEELVIRVLC-PF 316
+ + P L A G P++S+ +L+ G S L P
Sbjct: 245 HQLA--MQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPN 302
Query: 317 NKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMA 370
+ IG +IG+ G I IRQ SGAQI + + + E IT+T +P +I S+A
Sbjct: 303 DLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITG--TPANI-SLA 353
Score = 122 (48.0 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 40/129 (31%), Positives = 64/129 (49%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD-- 365
L IR+L ++G +IGK G T+K +R+ SGA+I++ + N E ++T+T P D
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITG---PTDAI 100
Query: 366 IKSMAVEAVLLLQTKINDEDDDT------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
K+ A+ A + IN + VT+RL+V EIR+ T
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 161 AQVQVA-GD 168
Score = 110 (43.8 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E +T++
Sbjct: 124 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG- 182
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
+PD I + V++L++
Sbjct: 183 -TPDAIIQCVKQICVVMLES 201
Score = 95 (38.5 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R VTI
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 180
Score = 94 (38.1 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I+++++ +R I+GTP A+ LI A
Sbjct: 305 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 359
Score = 88 (36.0 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 23 RRINEK-DEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKD 81
R++ K E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +
Sbjct: 31 RKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPE 88
Query: 82 RVVTI 86
R+VTI
Sbjct: 89 RIVTI 93
Score = 86 (35.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + IR+ +GA ++++ D + +R ISGTP+
Sbjct: 138 ASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 185
Score = 80 (33.2 bits), Expect = 7.5e-13, Sum P(3) = 7.5e-13
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I + SE +C + V I+G ++
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINI-----SEG--NCP---ERIVTITGPTD 98
Query: 203 AVKKALFAISAIMYKFSPREDI 224
A+ KA FA+ I YKF EDI
Sbjct: 99 AIFKA-FAM--IAYKFE--EDI 115
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 122 (48.0 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 40/129 (31%), Positives = 64/129 (49%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD-- 365
L IR+L ++G +IGK G T+K +R+ SGA+I++ + N E ++T+T P D
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITG---PTDAI 68
Query: 366 IKSMAVEAVLLLQTKINDEDDDT------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
K+ A+ A + IN + VT+RL+V EIR+ T
Sbjct: 69 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 129 AQVQVA-GD 136
Score = 110 (43.8 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E +T++
Sbjct: 92 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG- 150
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
+PD I + V++L++
Sbjct: 151 -TPDAIIQCVKQICVVMLES 169
Score = 95 (38.5 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R VTI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 148
Score = 94 (38.1 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I+++++ +R I+GTP A+ LI A
Sbjct: 253 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 307
Score = 86 (35.3 bits), Expect = 6.4e-11, Sum P(3) = 6.4e-11
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G+ IK +R T ++V T + V ISG +
Sbjct: 101 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST-------ERAVTISGTPD 153
Query: 203 AVKKALFAISAIMYKFSPR 221
A+ + + I +M + P+
Sbjct: 154 AIIQCVKQICVVMLESPPK 172
Score = 86 (35.3 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + IR+ +GA ++++ D + +R ISGTP+
Sbjct: 106 ASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 85 (35.0 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMA 370
P + IG +IG+ G I IRQ SGAQI + + + E IT+T +P +I S+A
Sbjct: 249 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITG--TPANI-SLA 301
Score = 84 (34.6 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R+VTI
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI 61
Score = 80 (33.2 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I + SE +C + V I+G ++
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINI-----SEG--NCP---ERIVTITGPTD 66
Query: 203 AVKKALFAISAIMYKFSPREDI 224
A+ KA FA+ I YKF EDI
Sbjct: 67 AIFKA-FAM--IAYKFE--EDI 83
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 112 (44.5 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 38/129 (29%), Positives = 63/129 (48%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
L IR+L ++G +IGK G T+K +R+ SGA+I++ + + E ++T+T P D
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GSCPERIVTITG---PTDAI 68
Query: 368 SMAVEAVLL-LQTKINDEDDDT-------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
A + L + IN ++ VT+RL+V EIR+ T
Sbjct: 69 FKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 129 AQVQVA-GD 136
Score = 107 (42.7 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAIESPDDI 366
+ +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E +T++ +PD I
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG--TPDAI 155
Query: 367 KSMAVE-AVLLLQT 379
+ V++L++
Sbjct: 156 IQCVKQICVVMLES 169
Score = 96 (38.9 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMAT 624
+G +IG+ GS + IR++SGA I+++++ +R I+G+P A+ LI A + T
Sbjct: 253 IGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLINARAVVT 312
Score = 95 (38.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R VTI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 148
Score = 94 (38.1 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 32/92 (34%), Positives = 45/92 (48%)
Query: 279 YADTGNTWPVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASG 338
+ G T P + L S + S EL I P + IG +IG+ G I IRQ SG
Sbjct: 221 FTPLGQTTPGFPERLDATS----PTSSHELTI----PNDLIGCIIGRQGSKINEIRQMSG 272
Query: 339 AQIDVDDTKDNRDECVITVTAIESPDDIKSMA 370
AQI + + + E +T+T SP +I S+A
Sbjct: 273 AQIKIANATEGSAERQVTITG--SPANI-SLA 301
Score = 87 (35.7 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 130 TDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAM 189
T++ K +++VP+SQ ++IGK G+ IK +R T ++V T
Sbjct: 88 TNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST----- 142
Query: 190 EFDNFVLISGESEAVKKALFAISAIMYKFSPR 221
+ V ISG +A+ + + I +M + P+
Sbjct: 143 --ERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 86 (35.3 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + IR+ +GA ++++ D + +R ISGTP+
Sbjct: 106 ASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 84 (34.6 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R+VTI
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTI 61
Score = 75 (31.5 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I + SE SC + V I+G ++
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINI-----SEG--SCP---ERIVTITGPTD 66
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA S I KF EDI T
Sbjct: 67 AIFKAF---SMIALKFE--EDINASMT 88
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 122 (48.0 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 40/129 (31%), Positives = 64/129 (49%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD-- 365
L IR+L ++G +IGK G T+K +R+ SGA+I++ + N E ++T+T P D
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITG---PTDAI 68
Query: 366 IKSMAVEAVLLLQTKINDEDDDT------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
K+ A+ A + IN + VT+RL+V EIR+ T
Sbjct: 69 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 129 AQVQVA-GD 136
Score = 110 (43.8 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E +T++
Sbjct: 92 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG- 150
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
+PD I + V++L++
Sbjct: 151 -TPDAIIQCVKQICVVMLES 169
Score = 95 (38.5 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R VTI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 148
Score = 94 (38.1 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I+++++ +R I+GTP A+ LI A
Sbjct: 295 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 349
Score = 86 (35.3 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G+ IK +R T ++V T + V ISG +
Sbjct: 101 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST-------ERAVTISGTPD 153
Query: 203 AVKKALFAISAIMYKFSPR 221
A+ + + I +M + P+
Sbjct: 154 AIIQCVKQICVVMLESPPK 172
Score = 86 (35.3 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 297 SGLVGA--SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
SGL + + + EL I P + IG +IG+ G I IRQ SGAQI + + + E
Sbjct: 275 SGLDASPPASTHELTI----PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQ 330
Query: 355 ITVTAIESPDDIKSMA 370
IT+T +P +I S+A
Sbjct: 331 ITITG--TPANI-SLA 343
Score = 86 (35.3 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + IR+ +GA ++++ D + +R ISGTP+
Sbjct: 106 ASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 84 (34.6 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R+VTI
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI 61
Score = 80 (33.2 bits), Expect = 6.6e-13, Sum P(3) = 6.6e-13
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I + SE +C + V I+G ++
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINI-----SEG--NCP---ERIVTITGPTD 66
Query: 203 AVKKALFAISAIMYKFSPREDI 224
A+ KA FA+ I YKF EDI
Sbjct: 67 AIFKA-FAM--IAYKFE--EDI 83
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 122 (48.0 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 40/129 (31%), Positives = 64/129 (49%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD-- 365
L IR+L ++G +IGK G T+K +R+ SGA+I++ + N E ++T+T P D
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITG---PTDAI 68
Query: 366 IKSMAVEAVLLLQTKINDEDDDT------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
K+ A+ A + IN + VT+RL+V EIR+ T
Sbjct: 69 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 129 AQVQVA-GD 136
Score = 110 (43.8 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E +T++
Sbjct: 92 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG- 150
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
+PD I + V++L++
Sbjct: 151 -TPDAIIQCVKQICVVMLES 169
Score = 95 (38.5 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R VTI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 148
Score = 94 (38.1 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I+++++ +R I+GTP A+ LI A
Sbjct: 295 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 349
Score = 86 (35.3 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G+ IK +R T ++V T + V ISG +
Sbjct: 101 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST-------ERAVTISGTPD 153
Query: 203 AVKKALFAISAIMYKFSPR 221
A+ + + I +M + P+
Sbjct: 154 AIIQCVKQICVVMLESPPK 172
Score = 86 (35.3 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 297 SGLVGA--SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
SGL + + + EL I P + IG +IG+ G I IRQ SGAQI + + + E
Sbjct: 275 SGLDASPPASTHELTI----PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQ 330
Query: 355 ITVTAIESPDDIKSMA 370
IT+T +P +I S+A
Sbjct: 331 ITITG--TPANI-SLA 343
Score = 86 (35.3 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + IR+ +GA ++++ D + +R ISGTP+
Sbjct: 106 ASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 84 (34.6 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R+VTI
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI 61
Score = 80 (33.2 bits), Expect = 6.6e-13, Sum P(3) = 6.6e-13
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I + SE +C + V I+G ++
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINI-----SEG--NCP---ERIVTITGPTD 66
Query: 203 AVKKALFAISAIMYKFSPREDI 224
A+ KA FA+ I YKF EDI
Sbjct: 67 AIFKA-FAM--IAYKFE--EDI 83
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 149 (57.5 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 62/236 (26%), Positives = 102/236 (43%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G+ IK +R T ++V T + V ISG E
Sbjct: 103 RLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNST-------ERAVTISGTPE 155
Query: 203 AVKKALFAISAIMYKFSPR-EDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPILPS 261
A+ + + I +M + P+ IP A N +L
Sbjct: 156 AIIQCVKQICVVMLESPPKGATIPYRPKPATAPVIFSGGQVRADTLTAPATANLSLLLQH 215
Query: 262 RSVPS--ILGAARVP--DLQGYADTG-NTWPVYSTGLSLVS--GLVGASQSEELVIRVLC 314
+ +P+ I G +P DL P S G + + G+ +SQ+ + +
Sbjct: 216 QPLPAYTIQGQYAIPHPDLTKLHQLAMQQTPFTSLGQTTPAFPGVDASSQASTHELTI-- 273
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMA 370
P + IG +IG+ G I IRQ SGAQI + + + + IT+T +P +I S+A
Sbjct: 274 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSDRQITITG--TPANI-SLA 326
Score = 114 (45.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 39/129 (30%), Positives = 63/129 (48%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD-- 365
L IR+L ++G +IGK G T+K +R+ S A+I+V + N E ++T+T P D
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSE--GNCPERIVTITG---PTDAI 70
Query: 366 IKSMAVEAVLLLQTKINDEDDDT------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
K+ A+ A + IN + VT+RL+V E+R+ T
Sbjct: 71 FKAFAMIAYKFEEDIINSMSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTG 130
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 131 AQVQVA-GD 138
Score = 103 (41.3 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK +R+++GAQ+ V D N E +T++
Sbjct: 94 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISG- 152
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
+P+ I + V++L++
Sbjct: 153 -TPEAIIQCVKQICVVMLES 171
Score = 98 (39.6 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I+++++ DR I+GTP A+ LI A
Sbjct: 278 IGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSDRQITITGTPANISLAQYLINA 332
Score = 92 (37.4 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I +R+ T A+V+V D P + +R VTI
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTI 150
Score = 87 (35.7 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
+ E G ++ R+L +GS+IGK G+ + +R+E+ AR+ V + +R+VTI
Sbjct: 7 QSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSEG--NCPERIVTI 63
Score = 86 (35.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + +R+ +GA ++++ D + +R ISGTPE
Sbjct: 108 ASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPE 155
Score = 82 (33.9 bits), Expect = 9.0e-13, Sum P(3) = 9.0e-13
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I V SE +C + V I+G ++
Sbjct: 19 RLLMHGKEVGSIIGKKGETVKKMREESSARINV-----SEG--NCP---ERIVTITGPTD 68
Query: 203 AVKKALFAISAIMYKFSPREDI 224
A+ KA FA+ I YKF EDI
Sbjct: 69 AIFKA-FAM--IAYKFE--EDI 85
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 135 (52.6 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 60/234 (25%), Positives = 99/234 (42%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G+ IK +R T ++V T + V ISG +
Sbjct: 133 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST-------ERAVTISGTPD 185
Query: 203 AVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGL-YPNADPILPS 261
A+ + + I +M + SP + + + A G P+ D +
Sbjct: 186 AIIQCVKQICVVMLE-SPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKL 244
Query: 262 RSVPSILGAARVPDL--QGYADTGNTWPVYST--GLSLVSGLVGASQSEELVIRVLC-PF 316
+ + P L A G P++S+ +L+ G S L P
Sbjct: 245 HQLA--MQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPN 302
Query: 317 NKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMA 370
+ IG +IG+ G I IRQ SGAQI + + + E IT+T +P +I S+A
Sbjct: 303 DLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITG--TPANI-SLA 353
Score = 122 (48.0 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 40/129 (31%), Positives = 64/129 (49%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD-- 365
L IR+L ++G +IGK G T+K +R+ SGA+I++ + N E ++T+T P D
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITG---PTDAI 100
Query: 366 IKSMAVEAVLLLQTKINDEDDDT------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
K+ A+ A + IN + VT+RL+V EIR+ T
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 161 AQVQVA-GD 168
Score = 110 (43.8 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E +T++
Sbjct: 124 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG- 182
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
+PD I + V++L++
Sbjct: 183 -TPDAIIQCVKQICVVMLES 201
Score = 95 (38.5 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R VTI
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 180
Score = 94 (38.1 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I+++++ +R I+GTP A+ LI A
Sbjct: 305 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 359
Score = 86 (35.3 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + IR+ +GA ++++ D + +R ISGTP+
Sbjct: 138 ASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 185
Score = 84 (34.6 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R+VTI
Sbjct: 39 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI 93
Score = 80 (33.2 bits), Expect = 7.5e-13, Sum P(3) = 7.5e-13
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I + SE +C + V I+G ++
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINI-----SEG--NCP---ERIVTITGPTD 98
Query: 203 AVKKALFAISAIMYKFSPREDI 224
A+ KA FA+ I YKF EDI
Sbjct: 99 AIFKA-FAM--IAYKFE--EDI 115
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 135 (52.6 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 60/234 (25%), Positives = 99/234 (42%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G+ IK +R T ++V T + V ISG +
Sbjct: 133 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST-------ERAVTISGTPD 185
Query: 203 AVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGL-YPNADPILPS 261
A+ + + I +M + SP + + + A G P+ D +
Sbjct: 186 AIIQCVKQICVVMLE-SPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKL 244
Query: 262 RSVPSILGAARVPDL--QGYADTGNTWPVYST--GLSLVSGLVGASQSEELVIRVLC-PF 316
+ + P L A G P++S+ +L+ G S L P
Sbjct: 245 HQLA--MQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPN 302
Query: 317 NKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMA 370
+ IG +IG+ G I IRQ SGAQI + + + E IT+T +P +I S+A
Sbjct: 303 DLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITG--TPANI-SLA 353
Score = 122 (48.0 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 40/129 (31%), Positives = 64/129 (49%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD-- 365
L IR+L ++G +IGK G T+K +R+ SGA+I++ + N E ++T+T P D
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITG---PTDAI 100
Query: 366 IKSMAVEAVLLLQTKINDEDDDT------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
K+ A+ A + IN + VT+RL+V EIR+ T
Sbjct: 101 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 161 AQVQVA-GD 168
Score = 110 (43.8 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E +T++
Sbjct: 124 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG- 182
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
+PD I + V++L++
Sbjct: 183 -TPDAIIQCVKQICVVMLES 201
Score = 95 (38.5 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R VTI
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 180
Score = 94 (38.1 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I+++++ +R I+GTP A+ LI A
Sbjct: 305 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 359
Score = 86 (35.3 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + IR+ +GA ++++ D + +R ISGTP+
Sbjct: 138 ASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 185
Score = 84 (34.6 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R+VTI
Sbjct: 39 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI 93
Score = 80 (33.2 bits), Expect = 7.5e-13, Sum P(3) = 7.5e-13
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I + SE +C + V I+G ++
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINI-----SEG--NCP---ERIVTITGPTD 98
Query: 203 AVKKALFAISAIMYKFSPREDI 224
A+ KA FA+ I YKF EDI
Sbjct: 99 AIFKA-FAM--IAYKFE--EDI 115
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 112 (44.5 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 38/129 (29%), Positives = 63/129 (48%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
L IR+L ++G +IGK G T+K +R+ SGA+I++ + + E ++T+T P D
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GSCPERIVTITG---PTDAI 67
Query: 368 SMAVEAVLL-LQTKINDEDDDT-------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
A + L + IN ++ VT+RL+V EIR+ T
Sbjct: 68 FKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 127
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 128 AQVQVA-GD 135
Score = 109 (43.4 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 24/77 (31%), Positives = 47/77 (61%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAIESPDDI 366
+ +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E +T++ +PD I
Sbjct: 97 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG--TPDAI 154
Query: 367 KSMAVEAVLLLQTKIND 383
V+ + ++ ++++
Sbjct: 155 -IQCVKQICVVMLEVSE 170
Score = 95 (38.5 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R VTI
Sbjct: 97 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 147
Score = 94 (38.1 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ GS + IR++SGA I+++++ +R I+G+P A+ LI A
Sbjct: 291 IGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLINA 345
Score = 92 (37.4 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 34/96 (35%), Positives = 46/96 (47%)
Query: 279 YADTGNTWPVYSTGLSLVS--GLVGAS--QSEELVIRVLCPFNKIGRVIGKGGGTIKSIR 334
+ G T P + V GL S S EL I P + IG +IG+ G I IR
Sbjct: 251 FTPLGQTTPGFPAHFPSVPHIGLDATSPTSSHELTI----PNDLIGCIIGRQGSKINEIR 306
Query: 335 QASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMA 370
Q SGAQI + + + E +T+T SP +I S+A
Sbjct: 307 QMSGAQIKIANATEGSAERQVTITG--SPANI-SLA 339
Score = 86 (35.3 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + IR+ +GA ++++ D + +R ISGTP+
Sbjct: 105 ASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 152
Score = 84 (34.6 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R+VTI
Sbjct: 6 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTI 60
Score = 84 (34.6 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 130 TDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAM 189
T++ K +++VP+SQ ++IGK G+ IK +R T ++V T
Sbjct: 87 TNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST----- 141
Query: 190 EFDNFVLISGESEAVKKALFAISAIMYKFS 219
+ V ISG +A+ + + I +M + S
Sbjct: 142 --ERAVTISGTPDAIIQCVKQICVVMLEVS 169
Score = 75 (31.5 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I + SE SC + V I+G ++
Sbjct: 16 RLLMHGKEVGSIIGKKGETVKKMREESGARINI-----SEG--SCP---ERIVTITGPTD 65
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA S I KF EDI T
Sbjct: 66 AIFKAF---SMIALKFE--EDINASMT 87
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 112 (44.5 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 38/129 (29%), Positives = 63/129 (48%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
L IR+L ++G +IGK G T+K +R+ SGA+I++ + + E ++T+T P D
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GSCPERIVTITG---PTDAI 68
Query: 368 SMAVEAVLL-LQTKINDEDDDT-------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
A + L + IN ++ VT+RL+V EIR+ T
Sbjct: 69 FKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 129 AQVQVA-GD 136
Score = 107 (42.7 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAIESPDDI 366
+ +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E +T++ +PD I
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG--TPDAI 155
Query: 367 KSMAVE-AVLLLQT 379
+ V++L++
Sbjct: 156 IQCVKQICVVMLES 169
Score = 97 (39.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 50/177 (28%), Positives = 72/177 (40%)
Query: 195 VLISGESEAVKKALFAISAIMYKFSPR-EDIPLETTVREAXXXXXXXXXXXXXXXGGLYP 253
V ISG +A+ + + I +M + P+ IP A G Y
Sbjct: 146 VTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASAPIIFAGGQAFTIQ---GQYA 202
Query: 254 NADPILPSRSVPSILGAARVPDLQGYADTGNTWPVYSTGLSLVSGLVGASQSEELVIRVL 313
P L + + A + P T +PV GL S + S EL I
Sbjct: 203 IPHPDLTK--LHQL--AMQHPPFTPLGQTTPGFPVPHIGLDATS----PTSSHELTI--- 251
Query: 314 CPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMA 370
P + IG +IG+ G I IRQ SGAQI + + + E +T+T SP +I S+A
Sbjct: 252 -PNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITG--SPANI-SLA 304
Score = 95 (38.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R VTI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 148
Score = 94 (38.1 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ GS + IR++SGA I+++++ +R I+G+P A+ LI A
Sbjct: 256 IGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLINA 310
Score = 87 (35.7 bits), Expect = 5.6e-11, Sum P(3) = 5.6e-11
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 130 TDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAM 189
T++ K +++VP+SQ ++IGK G+ IK +R T ++V T
Sbjct: 88 TNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST----- 142
Query: 190 EFDNFVLISGESEAVKKALFAISAIMYKFSPR 221
+ V ISG +A+ + + I +M + P+
Sbjct: 143 --ERAVTISGTPDAIIQCVKQICVVMLESPPK 172
Score = 86 (35.3 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + IR+ +GA ++++ D + +R ISGTP+
Sbjct: 106 ASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 84 (34.6 bits), Expect = 3.4e-13, Sum P(3) = 3.4e-13
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R+VTI
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTI 61
Score = 75 (31.5 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I + SE SC + V I+G ++
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINI-----SEG--SCP---ERIVTITGPTD 66
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA S I KF EDI T
Sbjct: 67 AIFKAF---SMIALKFE--EDINASMT 88
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 118 (46.6 bits), Expect = 6.1e-13, Sum P(3) = 6.1e-13
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 278 GYADTGNTW-PVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQA 336
GY D ++W P S G S + G + ++ I P + G +IGKGG IK IR
Sbjct: 330 GY-DNNSSWEPFQSGGRGSYSDIGGPVITTQVTI----PKDLAGSIIGKGGQRIKQIRHE 384
Query: 337 SGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLLLQTKI 381
SGA I +D+ + ++ +IT+T + D I++ A LLQ +
Sbjct: 385 SGASIKIDEPLEGSEDRIITITGTQ--DQIQN----AQYLLQNSV 423
Score = 98 (39.6 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 368 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 420
Score = 96 (38.9 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 33/132 (25%), Positives = 60/132 (45%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP 363
++E+V +RVL G VIGKGG IK++R A + V D+ E +++V+A
Sbjct: 40 TDEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSVSA--DI 95
Query: 364 DDIKSMAVEAVLLLQTKINDEDDD-TVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADV 422
D I + ++ + L+ + D +RLL+ E+R+ T+ +
Sbjct: 96 DTIGEILLKIIPTLEEYQHYSGTDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 155
Query: 423 RISKGDKPKCAD 434
++ + P D
Sbjct: 156 KLFQECCPHSTD 167
Score = 88 (36.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVLISGES 201
Q+ +P + +IIGK G IK++R ++ SIK+ P + SE D + I+G
Sbjct: 359 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE---------DRIITITGTQ 409
Query: 202 EAVKKALFAISAIMYKFSPR 221
+ ++ A + + + ++S R
Sbjct: 410 DQIQNAQYLLQNSVKQYSGR 429
Score = 87 (35.7 bits), Expect = 6.1e-13, Sum P(3) = 6.1e-13
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK LR T+T+IK+ + C D VL+ G+
Sbjct: 123 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-------CCPHSTDRVVLVGGK 175
Query: 201 SEAVKKALFAI 211
E V + + I
Sbjct: 176 PERVVECIKVI 186
Score = 82 (33.9 bits), Expect = 6.1e-13, Sum P(3) = 6.1e-13
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 13 DNDRDGKNQKRRINE----KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRA 68
+ D +GK ++E K + +E V R+L G+VIGK GK I ++R + A
Sbjct: 16 NTDTNGKRPAEDMDEEQAFKRSRNTDEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNA 75
Query: 69 RVKVVDPFPGAKDRVVTI 86
V V D +R++++
Sbjct: 76 SVSVPDS--SGPERILSV 91
Score = 72 (30.4 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
E E ++L+ S + +IGK G IK LR+ S+ V P D+S P ++ D
Sbjct: 42 EMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSVSAD 94
Score = 68 (29.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRVVTI 86
R+L + G +IG G I +R+ T+ +K+ P + DRVV +
Sbjct: 125 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLV 172
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 112 (44.5 bits), Expect = 7.0e-13, Sum P(3) = 7.0e-13
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 278 GYADTGNTWPV-YSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQA 336
GY D+ ++W Y +G G S + +V P + G +IGKGG IK IR
Sbjct: 329 GY-DSNSSWDSSYQSG-----GRSSYSDGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHE 382
Query: 337 SGAQIDVDDTKDNRDECVITVTAIESPDDIKS 368
SGA I +D+ ++ +IT+T + D I++
Sbjct: 383 SGASIKIDEPLQGSEDRIITITGTQ--DQIQN 412
Score = 98 (39.6 bits), Expect = 2.6e-11, Sum P(3) = 2.6e-11
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 366 GSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIITITGTQDQIQNAQYLLQ 418
Score = 96 (38.9 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 32/132 (24%), Positives = 62/132 (46%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP 363
S+E+V +R+L G VIGKGG IK++R A + V D+ E +++V+A + P
Sbjct: 39 SDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATVSVPDSSG--PERILSVSA-DIP 95
Query: 364 DDIKSMAVEAVLLLQTKINDEDDD-TVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADV 422
+ + ++ + L+ + + D +RLL+ E+R T+ +
Sbjct: 96 T-VAEILLKIIPTLEEYQHHKGVDFDCELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTI 154
Query: 423 RISKGDKPKCAD 434
++ + P+ D
Sbjct: 155 KLFQECCPQSTD 166
Score = 91 (37.1 bits), Expect = 7.0e-13, Sum P(3) = 7.0e-13
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + +IIG GA IK LR T+T+IK+ + C D VL+ G+
Sbjct: 122 ELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQE-------CCPQSTDRVVLVGGK 174
Query: 201 SEAVKKAL 208
+E V + +
Sbjct: 175 AERVVQCI 182
Score = 84 (34.6 bits), Expect = 7.0e-13, Sum P(3) = 7.0e-13
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 4 SGKRYRSQRDNDRDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIR 63
S K +R D D + +K K + ++E V RIL G+VIGK GK I ++R
Sbjct: 14 SNKESNGKRSAD-DSEEEKPY---KRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALR 69
Query: 64 QETRARVKVVDPFPGAKDRVVTI 86
+ A V V D +R++++
Sbjct: 70 TDYNATVSVPDS--SGPERILSV 90
Score = 80 (33.2 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVLISGES 201
Q+ +P + +IIGK G IK++R ++ SIK+ P SE D + I+G
Sbjct: 357 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSE---------DRIITITGTQ 407
Query: 202 EAVKKALFAI 211
+ ++ A + +
Sbjct: 408 DQIQNAQYLL 417
Score = 72 (30.4 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 31 KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRVVTI 86
KG + R+L + GS+IG G I +R T+ +K+ P + DRVV +
Sbjct: 115 KGVDFDCELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQECCPQSTDRVVLV 171
Score = 71 (30.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
E E +IL+ S + +IGK G IK LR+ ++ V P D+S P ++ D
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATVSV-P-DSSGPERILSVSAD 93
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 102 (41.0 bits), Expect = 8.7e-13, Sum P(3) = 8.7e-13
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTA 359
G+ + +R++ P ++ G +IGK G IK IR+ +GAQ+ V D N E +TV+
Sbjct: 95 GSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSG 154
Query: 360 IESPDDI 366
+ PD I
Sbjct: 155 V--PDAI 159
Score = 98 (39.6 bits), Expect = 8.7e-13, Sum P(3) = 8.7e-13
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G VIG+ GS ++ IR++SGA I++ + G+R I+G+P A+ LI A
Sbjct: 253 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITA 307
Score = 93 (37.8 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 34/133 (25%), Positives = 58/133 (43%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAI 360
G S L +R+L ++G +IGK G T+K IR+ S A+I + + + E + T+T
Sbjct: 11 GPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITGS 68
Query: 361 ESP--DDIKSMAV---EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIR 415
+ + +A E + VT+RL++ EIR
Sbjct: 69 TAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR 128
Query: 416 KRTKADVRISKGD 428
+ T A V+++ GD
Sbjct: 129 ETTGAQVQVA-GD 140
Score = 92 (37.4 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK+G I IR+ T A+V+V D P + +R VT+
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTV 152
Score = 90 (36.7 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 33/96 (34%), Positives = 47/96 (48%)
Query: 271 ARVPDLQGYADTGNTWPVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTI 330
A V LQ + G+ P S S+V G+ ++Q+ L P + IG VIG+ G I
Sbjct: 211 AEVTKLQQLS--GHAVPFASP--SVVPGMDPSTQTSSQ--EFLVPNDLIGCVIGRQGSKI 264
Query: 331 KSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
IRQ SGA I + + + E +T+T SP I
Sbjct: 265 SEIRQMSGAHIKIGNQAEGAGERHVTITG--SPVSI 298
Score = 86 (35.3 bits), Expect = 8.7e-13, Sum P(3) = 8.7e-13
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 30 EKGNEESVIY--RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIY 87
E+G E S+ R+L +GS+IGK G+ + IR+++ AR+ + + +R+ TI
Sbjct: 9 EEGPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTIT 66
Query: 88 SHXXXXXXXXXXXXXXXXXPLCAA 111
LCAA
Sbjct: 67 GSTAAVFHAVSMIAFKLDEDLCAA 90
Score = 81 (33.6 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++++P+SQ ++IGKAG IK +R T ++V T + V +SG +
Sbjct: 105 RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST-------ERAVTVSGVPD 157
Query: 203 AVKKALFAISAIMYKFSPR 221
A+ + I A++ + P+
Sbjct: 158 AIILCVRQICAVILESPPK 176
Score = 81 (33.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGKAG+ + IR+ +GA ++++ D + +R +SG P+
Sbjct: 110 ASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD 157
Score = 70 (29.7 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+KR+R ++ S ++T + S P + I+G +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQS--SARITISEGSCP--------ERITTITGSTA 70
Query: 203 AVKKALFAISAIMYKFSPREDI 224
AV A+S I +K ED+
Sbjct: 71 AV---FHAVSMIAFKLD--EDL 87
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 101 (40.6 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMA 623
+G VIG+ GS ++ IR++SGA I++ + G+R I+G+P A+ LI A+ A
Sbjct: 253 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITAWAAA 311
Score = 100 (40.3 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAIESPDDI 366
+ +R++ P ++ G +IGK G IK IR+ +GAQ+ V D N E +TV+ + PD I
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGV--PDAI 159
Score = 92 (37.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK+G I IR+ T A+V+V D P + +R VT+
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTV 152
Score = 91 (37.1 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 32/126 (25%), Positives = 57/126 (45%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP--DD 365
L +R+L ++G +IGK G T+K IR+ S A+I + + + E + T+T +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITGSTAAVFHA 75
Query: 366 IKSMAV---EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADV 422
+ +A E + + VT+RL++ EIR+ T A V
Sbjct: 76 VSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQV 135
Query: 423 RISKGD 428
+++ GD
Sbjct: 136 QVA-GD 140
Score = 89 (36.4 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDEC 353
S+V GL +Q+ L P + IG VIG+ G I IRQ SGA I + + + E
Sbjct: 230 SVVPGLDPGTQTSSQ--EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 354 VITVTAIESPDDI 366
+T+T SP I
Sbjct: 288 HVTITG--SPVSI 298
Score = 81 (33.6 bits), Expect = 8.7e-11, Sum P(3) = 8.7e-11
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++++P+SQ ++IGKAG IK +R T ++V T + V +SG +
Sbjct: 105 RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST-------ERAVTVSGVPD 157
Query: 203 AVKKALFAISAIMYKFSPR 221
A+ + I A++ + P+
Sbjct: 158 AIILCVRQICAVILESPPK 176
Score = 81 (33.6 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGKAG+ + IR+ +GA ++++ D + +R +SG P+
Sbjct: 110 ASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD 157
Score = 80 (33.2 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHXXXXXXXXXX 99
R+L +GS+IGK G+ + IR+++ AR+ + + +R+ TI
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTAAVFHAVSM 78
Query: 100 XXXXXXXPLCAA 111
LCAA
Sbjct: 79 IAFKLDEDLCAA 90
Score = 70 (29.7 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+KR+R ++ S ++T + S P + I+G +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQS--SARITISEGSCP--------ERITTITGSTA 70
Query: 203 AVKKALFAISAIMYKFSPREDI 224
AV A+S I +K ED+
Sbjct: 71 AV---FHAVSMIAFKLD--EDL 87
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 119 (46.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 39/129 (30%), Positives = 64/129 (49%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD-- 365
L IR+L ++G +IGK G T+K +R+ SGA+I++ + N E ++T+T P D
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITG---PTDAI 70
Query: 366 IKSMAVEAVLLLQTKINDEDDDT------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
K+ A+ A + IN + VT+RL+V E+R+ T
Sbjct: 71 FKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTG 130
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 131 AQVQVA-GD 138
Score = 103 (41.3 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK +R+++GAQ+ V D N E +T++
Sbjct: 94 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISG- 152
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
+P+ I + V++L++
Sbjct: 153 -TPEAIIQCVKQICVVMLES 171
Score = 94 (38.1 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I+++++ +R I+GTP A+ LI A
Sbjct: 278 IGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLINA 332
Score = 92 (37.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I +R+ T A+V+V D P + +R VTI
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTI 150
Score = 89 (36.4 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G+ IK +R T ++V T + V ISG E
Sbjct: 103 RLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNST-------ERAVTISGTPE 155
Query: 203 AVKKALFAISAIMYKFSPR 221
A+ + + I +M + P+
Sbjct: 156 AIIQCVKQICVVMLESPPK 174
Score = 86 (35.3 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK GS + +R+ +GA ++++ D + +R ISGTPE
Sbjct: 108 ASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPE 155
Score = 85 (35.0 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
+ E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R+VTI
Sbjct: 7 QSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTI 63
Score = 85 (35.0 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMA 370
P + IG +IG+ G I IRQ SGAQI + + + E IT+T +P +I S+A
Sbjct: 274 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITG--TPANI-SLA 326
Score = 80 (33.2 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I + SE +C + V I+G ++
Sbjct: 19 RLLMHGKEVGSIIGKKGETVKKMREESGARINI-----SEG--NCP---ERIVTITGPTD 68
Query: 203 AVKKALFAISAIMYKFSPREDI 224
A+ KA FA+ I YKF EDI
Sbjct: 69 AIFKA-FAM--IAYKFE--EDI 85
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 109 (43.4 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 38/137 (27%), Positives = 66/137 (48%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
SG++ + L IR+L ++G +IGK G ++K +R+ SGA+I++ + N E +IT
Sbjct: 3 SGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIIT 60
Query: 357 V----TAI-ESPDDIKSMAVEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXX 411
+ TAI ++ I E + + VT+R++V
Sbjct: 61 LAGPTTAIFKAFSMIIEKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKI 120
Query: 412 NEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 121 KEIRESTGAQVQVA-GD 136
Score = 105 (42.0 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITV--T 358
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ T
Sbjct: 92 ATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGT 151
Query: 359 AIESPDDIKSMAV 371
+ + +K + V
Sbjct: 152 PLSIIECVKQICV 164
Score = 95 (38.5 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I++++ DR I+G+P AE LI A
Sbjct: 252 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSSDRQVTITGSPASISLAEYLINA 306
Score = 93 (37.8 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 35/126 (27%), Positives = 59/126 (46%)
Query: 253 PNADPIL-PSRSVPSILGAARVPD-----LQGYADTGNTWPVYSTGLSLVSGLVGASQ-- 304
P+ P++ ++ G +P L A + +P+ + +G+ ++Q
Sbjct: 182 PSGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPLAPSSQGFTAGMDASAQTG 241
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPD 364
S EL I P + IG +IG+ G I IRQ SGAQI + + + + +T+T SP
Sbjct: 242 SHELTI----PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSSDRQVTITG--SPA 295
Query: 365 DIKSMA 370
I S+A
Sbjct: 296 SI-SLA 300
Score = 93 (37.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V RI+ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 79 (32.9 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Score = 76 (31.8 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+I+VP+SQ ++IGK G IK +R T ++V
Sbjct: 101 RIVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 57 (25.1 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASE 182
++L+ + +IIGK G ++K++R ++ I ++ + E
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPE 56
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 136 (52.9 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 58/236 (24%), Positives = 102/236 (43%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++++P+SQ ++IGK G+ IK +R KT ++V T + V ISG +
Sbjct: 114 RLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNST-------ERGVTISGSQD 166
Query: 203 AVKKALFAISAIMYKFSPR-EDIPLETTVREAXXXXXXXXXXXXXXXGG--LYPNADPIL 259
A+ + + I ++ + P+ IP + L+ A L
Sbjct: 167 AIIQCVKLICTVILESPPKGATIPYRPSPAPGAVLLAGNQVFETSEFASHPLFSVAQGGL 226
Query: 260 PSRSVPSILGAARVPD-----LQGYADTGNTWPV-YSTGLSLV-SGLVGASQ--SEELVI 310
+ ++ +P L + P+ +T ++ +G+ +SQ S+EL+I
Sbjct: 227 DLQQAYTVQNQYGIPHSELAKLHQLSMQQGLGPIAQATATQVLPAGIESSSQTASQELLI 286
Query: 311 RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
P + IG +IG+ G I IRQ SGAQI + D+ + +T+T SP I
Sbjct: 287 ----PNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDSTSDRHVTITG--SPISI 336
Score = 103 (41.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT-AIESPDDI 366
L +R+L ++G +IGK G T+K IR+ S A+I++ + + E +IT+T A E
Sbjct: 27 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISE--GSCPERIITITGATECVFRA 84
Query: 367 KSMAV----EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADV 422
+M E + L VT+RL++ EIR++T A V
Sbjct: 85 FTMITIKLEEDLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQV 144
Query: 423 RISKGD 428
+++ GD
Sbjct: 145 QVA-GD 149
Score = 101 (40.6 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAIESPDDI 366
+ +R++ P ++ G +IGKGG IK IR+ +GAQ+ V D N E +T++ S D I
Sbjct: 111 VTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNSTERGVTISG--SQDAI 168
Query: 367 KSMAVEAVLLLQTKINDEDDDTVTI 391
++ V L+ T I + TI
Sbjct: 169 ----IQCVKLICTVILESPPKGATI 189
Score = 94 (38.1 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++ S DR I+G+P A+ LI
Sbjct: 291 IGSIIGRQGTKINEIRQVSGAQIKIGSQLDSTSDRHVTITGSPISINLAQYLI 343
Score = 92 (37.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR++T A+V+V D P + +R VTI
Sbjct: 111 VTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNSTERGVTI 161
Score = 90 (36.7 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 18 GKNQKRRIN-EKD--EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVD 74
G + R+N E+D + G ++ R+L +GS+IGK G+ + IR+E+ AR+ + +
Sbjct: 5 GPDSHVRMNCEQDFGDGGMNVTLTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISE 64
Query: 75 PFPGAKDRVVTI 86
+R++TI
Sbjct: 65 G--SCPERIITI 74
Score = 69 (29.3 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+KR+R ++ I + SE SC + + I+G +E
Sbjct: 30 RLLMHGKEVGSIIGKKGETVKRIREESSARINI-----SEG--SCP---ERIITITGATE 79
Query: 203 AVKKALFAIS 212
V +A I+
Sbjct: 80 CVFRAFTMIT 89
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 112 (44.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 40/139 (28%), Positives = 70/139 (50%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G+ + + L IR+L ++G +IGK G ++K IR+ SGA+I++ + N E +IT
Sbjct: 3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAVEAVLLLQTKINDEDDDT-------VTIRLLVXXXXXXXXXXXXXX 409
+T + K+ A+ + L+ IN ++ VT+RL+V
Sbjct: 61 LTGPTNAI-FKAFAM-IIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGC 118
Query: 410 XXNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 119 KIKEIRESTGAQVQVA-GD 136
Score = 107 (42.7 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P + G +IGKGG IK IR+++GAQ+ V D N E IT+ +
Sbjct: 92 AASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGV 151
Query: 361 ESPDDIKSMAVEAVL-LLQTKINDEDDDTVTI 391
P + + L +L+T +TI
Sbjct: 152 --PQSVTECVKQICLVMLETLSQSPQGRVMTI 181
Score = 89 (36.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 88 (36.0 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
N +G +IG+ G+N+ IR++SGA I++++ R I+G+ A+ LI A
Sbjct: 289 NLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 83 (34.3 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + IR+E+ AR+ + + +R++T+
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITL 61
Score = 83 (34.3 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAV 374
P N IG +IG+ G I IRQ SGAQI + + + +T+T + + + A
Sbjct: 287 PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINAR 346
Query: 375 L 375
L
Sbjct: 347 L 347
Score = 71 (30.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+++VP++Q ++IGK G IK +R T ++V
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 60 (26.2 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASE 182
++L+ + +IIGK G ++KR+R ++ I ++ + E
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPE 56
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 112 (44.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 40/139 (28%), Positives = 70/139 (50%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G+ + + L IR+L ++G +IGK G ++K IR+ SGA+I++ + N E +IT
Sbjct: 3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAVEAVLLLQTKINDEDDDT-------VTIRLLVXXXXXXXXXXXXXX 409
+T + K+ A+ + L+ IN ++ VT+RL+V
Sbjct: 61 LTGPTNAI-FKAFAM-IIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGC 118
Query: 410 XXNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 119 KIKEIRESTGAQVQVA-GD 136
Score = 107 (42.7 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P + G +IGKGG IK IR+++GAQ+ V D N E IT+ +
Sbjct: 92 AASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGV 151
Query: 361 ESPDDIKSMAVEAVL-LLQTKINDEDDDTVTI 391
P + + L +L+T +TI
Sbjct: 152 --PQSVTECVKQICLVMLETLSQSPQGRVMTI 181
Score = 89 (36.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 88 (36.0 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
N +G +IG+ G+N+ IR++SGA I++++ R I+G+ A+ LI A
Sbjct: 289 NLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 83 (34.3 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + IR+E+ AR+ + + +R++T+
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITL 61
Score = 83 (34.3 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAV 374
P N IG +IG+ G I IRQ SGAQI + + + +T+T + + + A
Sbjct: 287 PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINAR 346
Query: 375 L 375
L
Sbjct: 347 L 347
Score = 71 (30.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+++VP++Q ++IGK G IK +R T ++V
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 60 (26.2 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASE 182
++L+ + +IIGK G ++KR+R ++ I ++ + E
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPE 56
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 112 (44.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 40/139 (28%), Positives = 70/139 (50%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G+ + + L IR+L ++G +IGK G ++K IR+ SGA+I++ + N E +IT
Sbjct: 3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAVEAVLLLQTKINDEDDDT-------VTIRLLVXXXXXXXXXXXXXX 409
+T + K+ A+ + L+ IN ++ VT+RL+V
Sbjct: 61 LTGPTNAI-FKAFAM-IIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGC 118
Query: 410 XXNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 119 KIKEIRESTGAQVQVA-GD 136
Score = 107 (42.7 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P + G +IGKGG IK IR+++GAQ+ V D N E IT+ +
Sbjct: 92 AASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGV 151
Query: 361 ESPDDIKSMAVEAVL-LLQTKINDEDDDTVTI 391
P + + L +L+T +TI
Sbjct: 152 --PQSVTECVKQICLVMLETLSQSPQGRVMTI 181
Score = 89 (36.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 88 (36.0 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
N +G +IG+ G+N+ IR++SGA I++++ R I+G+ A+ LI A
Sbjct: 289 NLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 83 (34.3 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + IR+E+ AR+ + + +R++T+
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITL 61
Score = 83 (34.3 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAV 374
P N IG +IG+ G I IRQ SGAQI + + + +T+T + + + A
Sbjct: 287 PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINAR 346
Query: 375 L 375
L
Sbjct: 347 L 347
Score = 71 (30.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+++VP++Q ++IGK G IK +R T ++V
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 60 (26.2 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASE 182
++L+ + +IIGK G ++KR+R ++ I ++ + E
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPE 56
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 112 (44.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 40/139 (28%), Positives = 70/139 (50%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G+ + + L IR+L ++G +IGK G ++K IR+ SGA+I++ + N E +IT
Sbjct: 3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAVEAVLLLQTKINDEDDDT-------VTIRLLVXXXXXXXXXXXXXX 409
+T + K+ A+ + L+ IN ++ VT+RL+V
Sbjct: 61 LTGPTNAI-FKAFAM-IIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGC 118
Query: 410 XXNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 119 KIKEIRESTGAQVQVA-GD 136
Score = 107 (42.7 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P + G +IGKGG IK IR+++GAQ+ V D N E IT+ +
Sbjct: 92 AASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGV 151
Query: 361 ESPDDIKSMAVEAVL-LLQTKINDEDDDTVTI 391
P + + L +L+T +TI
Sbjct: 152 --PQSVTECVKQICLVMLETLSQSPQGRVMTI 181
Score = 89 (36.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 88 (36.0 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
N +G +IG+ G+N+ IR++SGA I++++ R I+G+ A+ LI A
Sbjct: 289 NLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 83 (34.3 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + IR+E+ AR+ + + +R++T+
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITL 61
Score = 83 (34.3 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAV 374
P N IG +IG+ G I IRQ SGAQI + + + +T+T + + + A
Sbjct: 287 PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINAR 346
Query: 375 L 375
L
Sbjct: 347 L 347
Score = 71 (30.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+++VP++Q ++IGK G IK +R T ++V
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 60 (26.2 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASE 182
++L+ + +IIGK G ++KR+R ++ I ++ + E
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPE 56
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 112 (44.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 40/139 (28%), Positives = 70/139 (50%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G+ + + L IR+L ++G +IGK G ++K IR+ SGA+I++ + N E +IT
Sbjct: 3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAVEAVLLLQTKINDEDDDT-------VTIRLLVXXXXXXXXXXXXXX 409
+T + K+ A+ + L+ IN ++ VT+RL+V
Sbjct: 61 LTGPTNAI-FKAFAM-IIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGC 118
Query: 410 XXNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 119 KIKEIRESTGAQVQVA-GD 136
Score = 107 (42.7 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P + G +IGKGG IK IR+++GAQ+ V D N E IT+ +
Sbjct: 92 AASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGV 151
Query: 361 ESPDDIKSMAVEAVL-LLQTKINDEDDDTVTI 391
P + + L +L+T +TI
Sbjct: 152 --PQSVTECVKQICLVMLETLSQSPQGRVMTI 181
Score = 89 (36.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 88 (36.0 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
N +G +IG+ G+N+ IR++SGA I++++ R I+G+ A+ LI A
Sbjct: 289 NLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 83 (34.3 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + IR+E+ AR+ + + +R++T+
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITL 61
Score = 83 (34.3 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAV 374
P N IG +IG+ G I IRQ SGAQI + + + +T+T + + + A
Sbjct: 287 PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINAR 346
Query: 375 L 375
L
Sbjct: 347 L 347
Score = 71 (30.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+++VP++Q ++IGK G IK +R T ++V
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 60 (26.2 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASE 182
++L+ + +IIGK G ++KR+R ++ I ++ + E
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPE 56
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 112 (44.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 40/139 (28%), Positives = 70/139 (50%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G+ + + L IR+L ++G +IGK G ++K IR+ SGA+I++ + N E +IT
Sbjct: 3 AGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAVEAVLLLQTKINDEDDDT-------VTIRLLVXXXXXXXXXXXXXX 409
+T + K+ A+ + L+ IN ++ VT+RL+V
Sbjct: 61 LTGPTNAI-FKAFAM-IIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGC 118
Query: 410 XXNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 119 KIKEIRESTGAQVQVA-GD 136
Score = 107 (42.7 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P + G +IGKGG IK IR+++GAQ+ V D N E IT+ +
Sbjct: 92 AASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGV 151
Query: 361 ESPDDIKSMAVEAVL-LLQTKINDEDDDTVTI 391
P + + L +L+T +TI
Sbjct: 152 --PQSVTECVKQICLVMLETLSQSPQGRVMTI 181
Score = 89 (36.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 88 (36.0 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
N +G +IG+ G+N+ IR++SGA I++++ R I+G+ A+ LI A
Sbjct: 289 NLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 83 (34.3 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + IR+E+ AR+ + + +R++T+
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITL 61
Score = 83 (34.3 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAV 374
P N IG +IG+ G I IRQ SGAQI + + + +T+T + + + A
Sbjct: 287 PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINAR 346
Query: 375 L 375
L
Sbjct: 347 L 347
Score = 71 (30.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+++VP++Q ++IGK G IK +R T ++V
Sbjct: 101 RLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 60 (26.2 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASE 182
++L+ + +IIGK G ++KR+R ++ I ++ + E
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPE 56
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 102 (41.0 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTA 359
G+ + +R++ P ++ G +IGK G IK IR+ +GAQ+ V D N E +TV+
Sbjct: 95 GSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSG 154
Query: 360 IESPDDI 366
+ PD I
Sbjct: 155 V--PDAI 159
Score = 98 (39.6 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G VIG+ GS ++ IR++SGA I++ + G+R I+G+P A+ LI A
Sbjct: 253 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITA 307
Score = 92 (37.4 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 34/96 (35%), Positives = 47/96 (48%)
Query: 271 ARVPDLQGYADTGNTWPVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTI 330
A V LQ + G+ P S S+V GL ++Q+ L P + IG VIG+ G I
Sbjct: 211 AEVTKLQQLS--GHAVPFASP--SVVPGLDPSTQTSSQ--EFLVPNDLIGCVIGRQGSKI 264
Query: 331 KSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
IRQ SGA I + + + E +T+T SP I
Sbjct: 265 SEIRQMSGAHIKIGNQAEGAGERHVTITG--SPVSI 298
Score = 92 (37.4 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK+G I IR+ T A+V+V D P + +R VT+
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTV 152
Score = 90 (36.7 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 32/126 (25%), Positives = 56/126 (44%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP--DD 365
L +R+L ++G +IGK G T+K IR+ S A+I + + + E + T+T +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITGSTAAVFHA 75
Query: 366 IKSMAV---EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADV 422
+ +A E + VT+RL++ EIR+ T A V
Sbjct: 76 VSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQV 135
Query: 423 RISKGD 428
+++ GD
Sbjct: 136 QVA-GD 140
Score = 81 (33.6 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++++P+SQ ++IGKAG IK +R T ++V T + V +SG +
Sbjct: 105 RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST-------ERAVTVSGVPD 157
Query: 203 AVKKALFAISAIMYKFSPR 221
A+ + I A++ + P+
Sbjct: 158 AIILCVRQICAVILESPPK 176
Score = 81 (33.6 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGKAG+ + IR+ +GA ++++ D + +R +SG P+
Sbjct: 110 ASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD 157
Score = 80 (33.2 bits), Expect = 3.5e-12, Sum P(3) = 3.5e-12
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHXXXXXXXXXX 99
R+L +GS+IGK G+ + IR+++ AR+ + + +R+ TI
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTAAVFHAVSM 78
Query: 100 XXXXXXXPLCAA 111
LCAA
Sbjct: 79 IAFKLDEDLCAA 90
Score = 70 (29.7 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+KR+R ++ S ++T + S P + I+G +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQS--SARITISEGSCP--------ERITTITGSTA 70
Query: 203 AVKKALFAISAIMYKFSPREDI 224
AV A+S I +K ED+
Sbjct: 71 AV---FHAVSMIAFKLD--EDL 87
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 100 (40.3 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAIESPDDI 366
+ +R++ P ++ G +IGK G IK IR+ +GAQ+ V D N E +TV+ + PD I
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGV--PDAI 159
Score = 98 (39.6 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G VIG+ GS ++ IR++SGA I++ + G+R I+G+P A+ LI A
Sbjct: 253 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITA 307
Score = 94 (38.1 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 36/97 (37%), Positives = 47/97 (48%)
Query: 271 ARVPDLQGYADTGNTWPVYSTGLSLVSGL-VGASQSEELVIRVLCPFNKIGRVIGKGGGT 329
A V LQ + G+ P S S+V GL GA S + L P + IG VIG+ G
Sbjct: 211 AEVTKLQQLS--GHAVPFASP--SMVPGLDPGAQTSSQ---EFLVPNDLIGCVIGRQGSK 263
Query: 330 IKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
I IRQ SGA I + + + E +T+T SP I
Sbjct: 264 ISEIRQMSGAHIKIGNQAEGAGERHVTITG--SPVSI 298
Score = 92 (37.4 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK+G I IR+ T A+V+V D P + +R VT+
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTV 152
Score = 91 (37.1 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 32/126 (25%), Positives = 57/126 (45%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP--DD 365
L +R+L ++G +IGK G T+K IR+ S A+I + + + E + T+T +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITGSTAAVFHA 75
Query: 366 IKSMAV---EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADV 422
+ +A E + + VT+RL++ EIR+ T A V
Sbjct: 76 VSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQV 135
Query: 423 RISKGD 428
+++ GD
Sbjct: 136 QVA-GD 140
Score = 81 (33.6 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++++P+SQ ++IGKAG IK +R T ++V T + V +SG +
Sbjct: 105 RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST-------ERAVTVSGVPD 157
Query: 203 AVKKALFAISAIMYKFSPR 221
A+ + I A++ + P+
Sbjct: 158 AIILCVRQICAVILESPPK 176
Score = 81 (33.6 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGKAG+ + IR+ +GA ++++ D + +R +SG P+
Sbjct: 110 ASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD 157
Score = 80 (33.2 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHXXXXXXXXXX 99
R+L +GS+IGK G+ + IR+++ AR+ + + +R+ TI
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTAAVFHAVSM 78
Query: 100 XXXXXXXPLCAA 111
LCAA
Sbjct: 79 IAFKLDEDLCAA 90
Score = 70 (29.7 bits), Expect = 6.1e-11, Sum P(3) = 6.1e-11
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+KR+R ++ S ++T + S P + I+G +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQS--SARITISEGSCP--------ERITTITGSTA 70
Query: 203 AVKKALFAISAIMYKFSPREDI 224
AV A+S I +K ED+
Sbjct: 71 AV---FHAVSMIAFKLD--EDL 87
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 100 (40.3 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAIESPDDI 366
+ +R++ P ++ G +IGK G IK IR+ +GAQ+ V D N E +TV+ + PD I
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGV--PDAI 159
Score = 98 (39.6 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G VIG+ GS ++ IR++SGA I++ + G+R I+G+P A+ LI A
Sbjct: 253 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITA 307
Score = 93 (37.8 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 34/96 (35%), Positives = 47/96 (48%)
Query: 271 ARVPDLQGYADTGNTWPVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTI 330
A V LQ + G+ P S S+V GL ++Q+ L P + IG VIG+ G I
Sbjct: 211 AEVTKLQQLS--GHAVPFASP--SMVPGLDPSTQTSSQ--EFLVPNDLIGCVIGRQGSKI 264
Query: 331 KSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
IRQ SGA I + + + E +T+T SP I
Sbjct: 265 SEIRQMSGAHIKIGNQAEGAGERHVTITG--SPVSI 298
Score = 92 (37.4 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK+G I IR+ T A+V+V D P + +R VT+
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTV 152
Score = 91 (37.1 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 32/126 (25%), Positives = 57/126 (45%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP--DD 365
L +R+L ++G +IGK G T+K IR+ S A+I + + + E + T+T +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITGSTAAVFHA 75
Query: 366 IKSMAV---EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADV 422
+ +A E + + VT+RL++ EIR+ T A V
Sbjct: 76 VSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQV 135
Query: 423 RISKGD 428
+++ GD
Sbjct: 136 QVA-GD 140
Score = 81 (33.6 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++++P+SQ ++IGKAG IK +R T ++V T + V +SG +
Sbjct: 105 RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST-------ERAVTVSGVPD 157
Query: 203 AVKKALFAISAIMYKFSPR 221
A+ + I A++ + P+
Sbjct: 158 AIILCVRQICAVILESPPK 176
Score = 81 (33.6 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGKAG+ + IR+ +GA ++++ D + +R +SG P+
Sbjct: 110 ASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD 157
Score = 80 (33.2 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHXXXXXXXXXX 99
R+L +GS+IGK G+ + IR+++ AR+ + + +R+ TI
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTAAVFHAVSM 78
Query: 100 XXXXXXXPLCAA 111
LCAA
Sbjct: 79 IAFKLDEDLCAA 90
Score = 70 (29.7 bits), Expect = 6.1e-11, Sum P(3) = 6.1e-11
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+KR+R ++ S ++T + S P + I+G +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQS--SARITISEGSCP--------ERITTITGSTA 70
Query: 203 AVKKALFAISAIMYKFSPREDI 224
AV A+S I +K ED+
Sbjct: 71 AV---FHAVSMIAFKLD--EDL 87
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 100 (40.3 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAIESPDDI 366
+ +R++ P ++ G +IGK G IK IR+ +GAQ+ V D N E +TV+ + PD I
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGV--PDAI 159
Score = 98 (39.6 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G VIG+ GS ++ IR++SGA I++ + G+R I+G+P A+ LI A
Sbjct: 253 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITA 307
Score = 92 (37.4 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK+G I IR+ T A+V+V D P + +R VT+
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTV 152
Score = 91 (37.1 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 32/126 (25%), Positives = 57/126 (45%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP--DD 365
L +R+L ++G +IGK G T+K IR+ S A+I + + + E + T+T +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITGSTAAVFHA 75
Query: 366 IKSMAV---EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADV 422
+ +A E + + VT+RL++ EIR+ T A V
Sbjct: 76 VSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQV 135
Query: 423 RISKGD 428
+++ GD
Sbjct: 136 QVA-GD 140
Score = 89 (36.4 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDEC 353
S+V GL +Q+ L P + IG VIG+ G I IRQ SGA I + + + E
Sbjct: 230 SVVPGLDPGTQTSSQ--EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 287
Query: 354 VITVTAIESPDDI 366
+T+T SP I
Sbjct: 288 HVTITG--SPVSI 298
Score = 81 (33.6 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++++P+SQ ++IGKAG IK +R T ++V T + V +SG +
Sbjct: 105 RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST-------ERAVTVSGVPD 157
Query: 203 AVKKALFAISAIMYKFSPR 221
A+ + I A++ + P+
Sbjct: 158 AIILCVRQICAVILESPPK 176
Score = 81 (33.6 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGKAG+ + IR+ +GA ++++ D + +R +SG P+
Sbjct: 110 ASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD 157
Score = 80 (33.2 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHXXXXXXXXXX 99
R+L +GS+IGK G+ + IR+++ AR+ + + +R+ TI
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTAAVFHAVSM 78
Query: 100 XXXXXXXPLCAA 111
LCAA
Sbjct: 79 IAFKLDEDLCAA 90
Score = 70 (29.7 bits), Expect = 6.1e-11, Sum P(3) = 6.1e-11
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+KR+R ++ S ++T + S P + I+G +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQS--SARITISEGSCP--------ERITTITGSTA 70
Query: 203 AVKKALFAISAIMYKFSPREDI 224
AV A+S I +K ED+
Sbjct: 71 AV---FHAVSMIAFKLD--EDL 87
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 100 (40.3 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAIESPDDI 366
+ +R++ P ++ G +IGK G IK IR+ +GAQ+ V D N E +TV+ + PD I
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGV--PDAI 159
Score = 98 (39.6 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G VIG+ GS ++ IR++SGA I++ + G+R I+G+P A+ LI A
Sbjct: 254 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITA 308
Score = 92 (37.4 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK+G I IR+ T A+V+V D P + +R VT+
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTV 152
Score = 91 (37.1 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 32/126 (25%), Positives = 57/126 (45%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP--DD 365
L +R+L ++G +IGK G T+K IR+ S A+I + + + E + T+T +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITGSTAAVFHA 75
Query: 366 IKSMAV---EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADV 422
+ +A E + + VT+RL++ EIR+ T A V
Sbjct: 76 VSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQV 135
Query: 423 RISKGD 428
+++ GD
Sbjct: 136 QVA-GD 140
Score = 87 (35.7 bits), Expect = 9.0e-09, Sum P(3) = 9.0e-09
Identities = 32/96 (33%), Positives = 46/96 (47%)
Query: 271 ARVPDLQGYADTGNTWPVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTI 330
A V LQ + G+ P S + + +GL +Q+ L P + IG VIG+ G I
Sbjct: 211 AEVTKLQQLS--GHAVPFASPSM-VPAGLDPGTQTSSQ--EFLVPNDLIGCVIGRQGSKI 265
Query: 331 KSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
IRQ SGA I + + + E +T+T SP I
Sbjct: 266 SEIRQMSGAHIKIGNQAEGAGERHVTITG--SPVSI 299
Score = 81 (33.6 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++++P+SQ ++IGKAG IK +R T ++V T + V +SG +
Sbjct: 105 RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNST-------ERAVTVSGVPD 157
Query: 203 AVKKALFAISAIMYKFSPR 221
A+ + I A++ + P+
Sbjct: 158 AIILCVRQICAVILESPPK 176
Score = 81 (33.6 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGKAG+ + IR+ +GA ++++ D + +R +SG P+
Sbjct: 110 ASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD 157
Score = 80 (33.2 bits), Expect = 6.0e-12, Sum P(3) = 6.0e-12
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHXXXXXXXXXX 99
R+L +GS+IGK G+ + IR+++ AR+ + + +R+ TI
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTAAVFHAVSM 78
Query: 100 XXXXXXXPLCAA 111
LCAA
Sbjct: 79 IAFKLDEDLCAA 90
Score = 70 (29.7 bits), Expect = 6.2e-11, Sum P(3) = 6.2e-11
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+KR+R ++ S ++T + S P + I+G +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQS--SARITISEGSCP--------ERITTITGSTA 70
Query: 203 AVKKALFAISAIMYKFSPREDI 224
AV A+S I +K ED+
Sbjct: 71 AV---FHAVSMIAFKLD--EDL 87
>UNIPROTKB|E1BKJ7 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010610 "regulation of mRNA stability involved in response to
stress" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:DAAA02049054 EMBL:DAAA02049055 IPI:IPI00699469
RefSeq:NP_001179383.1 UniGene:Bt.27949 Ensembl:ENSBTAT00000015586
GeneID:516853 KEGG:bta:516853 NextBio:20872317 Uniprot:E1BKJ7
Length = 577
Score = 108 (43.1 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E Q+ +P+ IIGK G IK+L SIK+ P + P M V+I
Sbjct: 404 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRM-----VII 456
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F P+E++ LET +R
Sbjct: 457 TGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIR 493
Score = 92 (37.4 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
G + +L + P + GRVIGKGG T+ ++ + A++ V D T D D+ ++ +
Sbjct: 481 GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKI 539
Score = 87 (35.7 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 34/156 (21%), Positives = 65/156 (41%)
Query: 287 PVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--D 344
P TG + S + A + E +++V P +G +IGK G IK + + + A I +
Sbjct: 387 PSSVTGAAPYSSFMQAPEQE--MVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP 444
Query: 345 DTKDNRDECVITVTAIESPDDIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXX 403
+T D++ VI E+ K+ + L + +++ + + V
Sbjct: 445 ETPDSKVRMVIITGPPEA--QFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRV 502
Query: 404 XXXXXXXXNEIRKRTKADVRISKGDKPKCADANDEL 439
NE++ T A+V + + P D ND++
Sbjct: 503 IGKGGKTVNELQNLTAAEVVVPRDQTP---DENDQV 535
Score = 82 (33.9 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 31 KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
K + + R+L P +G++IGK G I +I ++T++++ V GA ++ ++++S
Sbjct: 190 KQQQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHS 248
Score = 79 (32.9 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A AVG +IGK G ++ + + + A+I+++ ++ R+ +I+G PE + A+ I
Sbjct: 414 AQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRI 470
Score = 76 (31.8 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD---NRDECVITVT-AI 360
++E+ +++L N +GR+IGK G +K + Q + +I + +D E ITV AI
Sbjct: 274 ADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAI 333
Query: 361 ES 362
E+
Sbjct: 334 EN 335
Score = 74 (31.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 35 ESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDP-FPGAKDRVVTI 86
E + ++ P +G++IGK G+ I + + A +K+ P P +K R+V I
Sbjct: 404 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVII 456
Score = 72 (30.4 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
++LVP+ IIGK GATI+ + +T++ I V K+
Sbjct: 199 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKE 235
Score = 70 (29.7 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
KD K +E V +IL + +G +IGK G+ + + Q+T ++ +
Sbjct: 269 KDTKTADE-VPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITI 312
Score = 58 (25.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT 176
D K ++ +IL ++ +IGK G +K++ T T I ++
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITIS 313
Score = 57 (25.1 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRV 600
A+A G+VIGK G + ++ ++ A + + D D+V
Sbjct: 496 ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQV 535
>UNIPROTKB|E2RTC5 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0010610 "regulation of mRNA stability involved in
response to stress" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:AAEX03006519 EMBL:AAEX03006520 RefSeq:XP_548184.2
ProteinModelPortal:E2RTC5 Ensembl:ENSCAFT00000026763 GeneID:491064
KEGG:cfa:491064 Uniprot:E2RTC5
Length = 577
Score = 108 (43.1 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E Q+ +P+ IIGK G IK+L SIK+ P + P M V+I
Sbjct: 404 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRM-----VII 456
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F P+E++ LET +R
Sbjct: 457 TGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIR 493
Score = 92 (37.4 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
G + +L + P + GRVIGKGG T+ ++ + A++ V D T D D+ ++ +
Sbjct: 481 GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKI 539
Score = 87 (35.7 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 34/156 (21%), Positives = 65/156 (41%)
Query: 287 PVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--D 344
P TG + S + A + E +++V P +G +IGK G IK + + + A I +
Sbjct: 387 PSSVTGAAPYSSFMQAPEQE--MVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP 444
Query: 345 DTKDNRDECVITVTAIESPDDIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXX 403
+T D++ VI E+ K+ + L + +++ + + V
Sbjct: 445 ETPDSKVRMVIITGPPEA--QFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRV 502
Query: 404 XXXXXXXXNEIRKRTKADVRISKGDKPKCADANDEL 439
NE++ T A+V + + P D ND++
Sbjct: 503 IGKGGKTVNELQNLTAAEVVVPRDQTP---DENDQV 535
Score = 82 (33.9 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 31 KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
K + + R+L P +G++IGK G I +I ++T++++ V GA ++ ++++S
Sbjct: 190 KQQQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHS 248
Score = 79 (32.9 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A AVG +IGK G ++ + + + A+I+++ ++ R+ +I+G PE + A+ I
Sbjct: 414 AQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRI 470
Score = 76 (31.8 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD---NRDECVITVT-AI 360
++E+ +++L N +GR+IGK G +K + Q + +I + +D E ITV AI
Sbjct: 274 ADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAI 333
Query: 361 ES 362
E+
Sbjct: 334 EN 335
Score = 74 (31.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 35 ESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDP-FPGAKDRVVTI 86
E + ++ P +G++IGK G+ I + + A +K+ P P +K R+V I
Sbjct: 404 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVII 456
Score = 72 (30.4 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
++LVP+ IIGK GATI+ + +T++ I V K+
Sbjct: 199 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKE 235
Score = 70 (29.7 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
KD K +E V +IL + +G +IGK G+ + + Q+T ++ +
Sbjct: 269 KDTKTADE-VPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITI 312
Score = 58 (25.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT 176
D K ++ +IL ++ +IGK G +K++ T T I ++
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITIS 313
Score = 57 (25.1 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRV 600
A+A G+VIGK G + ++ ++ A + + D D+V
Sbjct: 496 ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQV 535
>UNIPROTKB|Q9NZI8 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0043197 "dendritic
spine" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IMP]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IDA]
[GO:0005829 "cytosol" evidence=TAS] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0045182 "translation
regulator activity" evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IDA] [GO:0042035 "regulation of cytokine biosynthetic
process" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182 GO:GO:0030027
GO:GO:0003723 GO:GO:0048027 GO:GO:0003730 GO:GO:0042035
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 EMBL:AF198254 EMBL:DQ227344
EMBL:AC091133 EMBL:AC105030 IPI:IPI00008557 IPI:IPI00930694
RefSeq:NP_001153895.1 RefSeq:NP_006537.3 UniGene:Hs.144936 PDB:3KRM
PDBsum:3KRM ProteinModelPortal:Q9NZI8 SMR:Q9NZI8 DIP:DIP-38139N
IntAct:Q9NZI8 STRING:Q9NZI8 PhosphoSite:Q9NZI8 DMDM:296434536
PaxDb:Q9NZI8 PeptideAtlas:Q9NZI8 PRIDE:Q9NZI8 DNASU:10642
Ensembl:ENST00000290341 Ensembl:ENST00000431824 GeneID:10642
KEGG:hsa:10642 UCSC:uc002iom.3 GeneCards:GC17P047074
H-InvDB:HIX0013955 HGNC:HGNC:28866 HPA:HPA021367 MIM:608288
neXtProt:NX_Q9NZI8 PharmGKB:PA143485501 InParanoid:Q9NZI8
PhylomeDB:Q9NZI8 EvolutionaryTrace:Q9NZI8 GenomeRNAi:10642
NextBio:40447 ArrayExpress:Q9NZI8 Bgee:Q9NZI8 CleanEx:HS_IGF2BP1
CleanEx:HS_ZBP1 Genevestigator:Q9NZI8 GO:GO:0006403 Uniprot:Q9NZI8
Length = 577
Score = 108 (43.1 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E Q+ +P+ IIGK G IK+L SIK+ P + P M V+I
Sbjct: 404 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRM-----VII 456
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F P+E++ LET +R
Sbjct: 457 TGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIR 493
Score = 92 (37.4 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
G + +L + P + GRVIGKGG T+ ++ + A++ V D T D D+ ++ +
Sbjct: 481 GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKI 539
Score = 87 (35.7 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 34/156 (21%), Positives = 65/156 (41%)
Query: 287 PVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--D 344
P TG + S + A + E +++V P +G +IGK G IK + + + A I +
Sbjct: 387 PSSVTGAAPYSSFMQAPEQE--MVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP 444
Query: 345 DTKDNRDECVITVTAIESPDDIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXX 403
+T D++ VI E+ K+ + L + +++ + + V
Sbjct: 445 ETPDSKVRMVIITGPPEA--QFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRV 502
Query: 404 XXXXXXXXNEIRKRTKADVRISKGDKPKCADANDEL 439
NE++ T A+V + + P D ND++
Sbjct: 503 IGKGGKTVNELQNLTAAEVVVPRDQTP---DENDQV 535
Score = 82 (33.9 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 31 KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
K + + R+L P +G++IGK G I +I ++T++++ V GA ++ ++++S
Sbjct: 190 KQQQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHS 248
Score = 79 (32.9 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A AVG +IGK G ++ + + + A+I+++ ++ R+ +I+G PE + A+ I
Sbjct: 414 AQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRI 470
Score = 76 (31.8 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD---NRDECVITVT-AI 360
++E+ +++L N +GR+IGK G +K + Q + +I + +D E ITV AI
Sbjct: 274 ADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAI 333
Query: 361 ES 362
E+
Sbjct: 334 EN 335
Score = 74 (31.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 35 ESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDP-FPGAKDRVVTI 86
E + ++ P +G++IGK G+ I + + A +K+ P P +K R+V I
Sbjct: 404 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVII 456
Score = 72 (30.4 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
++LVP+ IIGK GATI+ + +T++ I V K+
Sbjct: 199 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKE 235
Score = 70 (29.7 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
KD K +E V +IL + +G +IGK G+ + + Q+T ++ +
Sbjct: 269 KDTKTADE-VPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITI 312
Score = 58 (25.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT 176
D K ++ +IL ++ +IGK G +K++ T T I ++
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITIS 313
Score = 57 (25.1 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRV 600
A+A G+VIGK G + ++ ++ A + + D D+V
Sbjct: 496 ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQV 535
>UNIPROTKB|I3L9X2 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:10642 GeneTree:ENSGT00530000063171 OMA:EQETVHV
EMBL:FP312864 RefSeq:XP_003358128.1 Ensembl:ENSSSCT00000022825
GeneID:100620940 KEGG:ssc:100620940 Uniprot:I3L9X2
Length = 577
Score = 108 (43.1 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E Q+ +P+ IIGK G IK+L SIK+ P + P M V+I
Sbjct: 404 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRM-----VII 456
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F P+E++ LET +R
Sbjct: 457 TGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIR 493
Score = 92 (37.4 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
G + +L + P + GRVIGKGG T+ ++ + A++ V D T D D+ ++ +
Sbjct: 481 GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKI 539
Score = 87 (35.7 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 34/156 (21%), Positives = 65/156 (41%)
Query: 287 PVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--D 344
P TG + S + A + E +++V P +G +IGK G IK + + + A I +
Sbjct: 387 PSSVTGAAPYSSFMQAPEQE--MVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP 444
Query: 345 DTKDNRDECVITVTAIESPDDIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXX 403
+T D++ VI E+ K+ + L + +++ + + V
Sbjct: 445 ETPDSKVRMVIITGPPEA--QFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRV 502
Query: 404 XXXXXXXXNEIRKRTKADVRISKGDKPKCADANDEL 439
NE++ T A+V + + P D ND++
Sbjct: 503 IGKGGKTVNELQNLTAAEVVVPRDQTP---DENDQV 535
Score = 82 (33.9 bits), Expect = 8.4e-12, Sum P(3) = 8.4e-12
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 31 KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
K + + R+L P +G++IGK G I +I ++T++++ V GA ++ ++++S
Sbjct: 190 KQQQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHS 248
Score = 79 (32.9 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A AVG +IGK G ++ + + + A+I+++ ++ R+ +I+G PE + A+ I
Sbjct: 414 AQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRI 470
Score = 76 (31.8 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD---NRDECVITVT-AI 360
++E+ +++L N +GR+IGK G +K + Q + +I + +D E ITV AI
Sbjct: 274 ADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAI 333
Query: 361 ES 362
E+
Sbjct: 334 EN 335
Score = 74 (31.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 35 ESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDP-FPGAKDRVVTI 86
E + ++ P +G++IGK G+ I + + A +K+ P P +K R+V I
Sbjct: 404 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVII 456
Score = 72 (30.4 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
++LVP+ IIGK GATI+ + +T++ I V K+
Sbjct: 199 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKE 235
Score = 70 (29.7 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
KD K +E V +IL + +G +IGK G+ + + Q+T ++ +
Sbjct: 269 KDTKTADE-VPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITI 312
Score = 58 (25.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT 176
D K ++ +IL ++ +IGK G +K++ T T I ++
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITIS 313
Score = 57 (25.1 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRV 600
A+A G+VIGK G + ++ ++ A + + D D+V
Sbjct: 496 ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQV 535
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 103 (41.3 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K+I + SGA + + D N E V+TV+ P+ +
Sbjct: 149 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 206
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 207 K-AVE--LIIQ-KIQED 219
Score = 92 (37.4 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 35/141 (24%), Positives = 63/141 (44%)
Query: 140 EECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISG 199
++ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SG
Sbjct: 147 KQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQE--RVVTVSG 200
Query: 200 ESEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPIL 259
E E +KA + I+ K +ED P + G Y N +L
Sbjct: 201 EPEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVL 254
Query: 260 PSRSVPS-ILGAARVPDLQGY 279
P+ + + +LG A + + +
Sbjct: 255 PTAAAAAGLLGHANLAGVAAF 275
Score = 91 (37.1 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRV 83
++ G + ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV
Sbjct: 39 KRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 98
Query: 84 VTI 86
I
Sbjct: 99 CLI 101
Score = 90 (36.7 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQKRAAENLI 617
+ G +IGK G+ + I + SGA +++S +RV +SG PEQ R A LI
Sbjct: 156 STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELI 212
Score = 85 (35.0 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+GTP +AA+ LI
Sbjct: 406 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 463
Score = 80 (33.2 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
++VL P G +IGKGG TI +++ +GA I + +KD
Sbjct: 51 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 89
Score = 79 (32.9 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
S + G ++ + V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 383 SAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 432
Score = 75 (31.5 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KD 179
++L+PS + +IIGK G TI +L+ +T +IK++ KD
Sbjct: 52 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 89
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 103 (41.3 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K+I + SGA + + D N E V+TV+ P+ +
Sbjct: 149 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 206
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 207 K-AVE--LIIQ-KIQED 219
Score = 91 (37.1 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRV 83
++ G + ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV
Sbjct: 39 KRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 98
Query: 84 VTI 86
I
Sbjct: 99 CLI 101
Score = 90 (36.7 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQKRAAENLI 617
+ G +IGK G+ + I + SGA +++S +RV +SG PEQ R A LI
Sbjct: 156 STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELI 212
Score = 89 (36.4 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 35/141 (24%), Positives = 63/141 (44%)
Query: 140 EECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISG 199
++ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SG
Sbjct: 147 KQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQE--RVVTVSG 200
Query: 200 ESEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPIL 259
E E +KA + I+ K +ED P + G Y N +L
Sbjct: 201 EPEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGFPYANTAEVL 254
Query: 260 PSRSVPS-ILGAARVPDLQGY 279
P+ + + +LG A + + +
Sbjct: 255 PTAAAAAGLLGHANLAGVAAF 275
Score = 85 (35.0 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+GTP +AA+ LI
Sbjct: 406 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 463
Score = 80 (33.2 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
++VL P G +IGKGG TI +++ +GA I + +KD
Sbjct: 51 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 89
Score = 79 (32.9 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
S + G ++ + V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 383 SAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 432
Score = 75 (31.5 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KD 179
++L+PS + +IIGK G TI +L+ +T +IK++ KD
Sbjct: 52 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 89
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 107 (42.7 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E Q+ +P+ IIGK G IK+L SIK+ P + P M V+I
Sbjct: 404 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRM-----VVI 456
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F P+E++ LET +R
Sbjct: 457 TGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIR 493
Score = 92 (37.4 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
G + +L + P + GRVIGKGG T+ ++ + A++ V D T D D+ ++ +
Sbjct: 481 GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKI 539
Score = 82 (33.9 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 31 KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
K + + R+L P +G++IGK G I +I ++T++++ V GA ++ ++++S
Sbjct: 190 KQQQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHS 248
Score = 82 (33.9 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 32/156 (20%), Positives = 64/156 (41%)
Query: 287 PVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--D 344
P TG + + A + E +++V P +G +IGK G IK + + + A I +
Sbjct: 387 PSSVTGAAPYGSFMQAPEQE--MVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP 444
Query: 345 DTKDNRDECVITVTAIESPDDIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXX 403
+T D++ V+ E+ K+ + L + +++ + + V
Sbjct: 445 ETPDSKVRMVVITGPPEA--QFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRV 502
Query: 404 XXXXXXXXNEIRKRTKADVRISKGDKPKCADANDEL 439
NE++ T A+V + + P D ND++
Sbjct: 503 IGKGGKTVNELQNLTAAEVVVPRDQTP---DENDQV 535
Score = 78 (32.5 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A AVG +IGK G ++ + + + A+I+++ ++ R+ +I+G PE + A+ I
Sbjct: 414 AQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPEAQFKAQGRI 470
Score = 76 (31.8 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD---NRDECVITVT-AI 360
++E+ +++L N +GR+IGK G +K + Q + +I + +D E ITV AI
Sbjct: 274 ADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAI 333
Query: 361 ES 362
E+
Sbjct: 334 EN 335
Score = 75 (31.5 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 35 ESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDP-FPGAKDRVVTI 86
E + ++ P +G++IGK G+ I + + A +K+ P P +K R+V I
Sbjct: 404 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVI 456
Score = 72 (30.4 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
++LVP+ IIGK GATI+ + +T++ I V K+
Sbjct: 199 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKE 235
Score = 70 (29.7 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
KD K +E V +IL + +G +IGK G+ + + Q+T ++ +
Sbjct: 269 KDTKTADE-VPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITI 312
Score = 58 (25.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT 176
D K ++ +IL ++ +IGK G +K++ T T I ++
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITIS 313
Score = 57 (25.1 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRV 600
A+A G+VIGK G + ++ ++ A + + D D+V
Sbjct: 496 ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQV 535
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 103 (41.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K+I + SGA + + D N E V+TV+ P+ +
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 231
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 232 K-AVE--LIIQ-KIQED 244
Score = 91 (37.1 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRV 83
++ G + ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV
Sbjct: 40 KRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 99
Query: 84 VTI 86
I
Sbjct: 100 CLI 102
Score = 91 (37.1 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 35/140 (25%), Positives = 62/140 (44%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
+ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SGE
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQE--RVVTVSGE 226
Query: 201 SEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPILP 260
E +KA + I+ K +ED P + G Y N +LP
Sbjct: 227 PEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP 280
Query: 261 SRSVPS-ILGAARVPDLQGY 279
+ + + +LG A + + +
Sbjct: 281 TAAAAAGLLGHANLAGVAAF 300
Score = 90 (36.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQKRAAENLI 617
+ G +IGK G+ + I + SGA +++S +RV +SG PEQ R A LI
Sbjct: 181 STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELI 237
Score = 85 (35.0 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+GTP +AA+ LI
Sbjct: 431 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 488
Score = 80 (33.2 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
++VL P G +IGKGG TI +++ +GA I + +KD
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 90
Score = 79 (32.9 bits), Expect = 9.7e-10, Sum P(3) = 9.7e-10
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
S + G ++ + V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 408 SAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 457
Score = 75 (31.5 bits), Expect = 4.7e-10, Sum P(3) = 4.7e-10
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KD 179
++L+PS + +IIGK G TI +L+ +T +IK++ KD
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 90
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 103 (41.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K+I + SGA + + D N E V+TV+ P+ +
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 231
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 232 K-AVE--LIIQ-KIQED 244
Score = 91 (37.1 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRV 83
++ G + ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV
Sbjct: 40 KRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 99
Query: 84 VTI 86
I
Sbjct: 100 CLI 102
Score = 91 (37.1 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 35/140 (25%), Positives = 62/140 (44%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
+ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SGE
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQE--RVVTVSGE 226
Query: 201 SEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPILP 260
E +KA + I+ K +ED P + G Y N +LP
Sbjct: 227 PEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP 280
Query: 261 SRSVPS-ILGAARVPDLQGY 279
+ + + +LG A + + +
Sbjct: 281 TAAAAAGLLGHANLAGVAAF 300
Score = 90 (36.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQKRAAENLI 617
+ G +IGK G+ + I + SGA +++S +RV +SG PEQ R A LI
Sbjct: 181 STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELI 237
Score = 85 (35.0 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+GTP +AA+ LI
Sbjct: 431 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 488
Score = 80 (33.2 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
++VL P G +IGKGG TI +++ +GA I + +KD
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 90
Score = 79 (32.9 bits), Expect = 9.7e-10, Sum P(3) = 9.7e-10
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
S + G ++ + V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 408 SAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 457
Score = 75 (31.5 bits), Expect = 4.7e-10, Sum P(3) = 4.7e-10
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KD 179
++L+PS + +IIGK G TI +L+ +T +IK++ KD
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 90
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 103 (41.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K+I + SGA + + D N E V+TV+ P+ +
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 231
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 232 K-AVE--LIIQ-KIQED 244
Score = 91 (37.1 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRV 83
++ G + ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV
Sbjct: 40 KRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 99
Query: 84 VTI 86
I
Sbjct: 100 CLI 102
Score = 91 (37.1 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 35/140 (25%), Positives = 62/140 (44%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
+ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SGE
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQE--RVVTVSGE 226
Query: 201 SEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPILP 260
E +KA + I+ K +ED P + G Y N +LP
Sbjct: 227 PEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP 280
Query: 261 SRSVPS-ILGAARVPDLQGY 279
+ + + +LG A + + +
Sbjct: 281 TAAAAAGLLGHANLAGVAAF 300
Score = 90 (36.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQKRAAENLI 617
+ G +IGK G+ + I + SGA +++S +RV +SG PEQ R A LI
Sbjct: 181 STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELI 237
Score = 85 (35.0 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+GTP +AA+ LI
Sbjct: 431 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 488
Score = 80 (33.2 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
++VL P G +IGKGG TI +++ +GA I + +KD
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 90
Score = 79 (32.9 bits), Expect = 9.7e-10, Sum P(3) = 9.7e-10
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
S + G ++ + V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 408 SAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 457
Score = 75 (31.5 bits), Expect = 4.7e-10, Sum P(3) = 4.7e-10
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KD 179
++L+PS + +IIGK G TI +L+ +T +IK++ KD
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 90
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 103 (41.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K+I + SGA + + D N E V+TV+ P+ +
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 231
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 232 K-AVE--LIIQ-KIQED 244
Score = 91 (37.1 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRV 83
++ G + ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV
Sbjct: 40 KRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 99
Query: 84 VTI 86
I
Sbjct: 100 CLI 102
Score = 91 (37.1 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
Identities = 35/140 (25%), Positives = 62/140 (44%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
+ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SGE
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQE--RVVTVSGE 226
Query: 201 SEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPILP 260
E +KA + I+ K +ED P + G Y N +LP
Sbjct: 227 PEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP 280
Query: 261 SRSVPS-ILGAARVPDLQGY 279
+ + + +LG A + + +
Sbjct: 281 TAAAAAGLLGHANLAGVAAF 300
Score = 90 (36.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQKRAAENLI 617
+ G +IGK G+ + I + SGA +++S +RV +SG PEQ R A LI
Sbjct: 181 STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELI 237
Score = 85 (35.0 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+GTP +AA+ LI
Sbjct: 431 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 488
Score = 80 (33.2 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
++VL P G +IGKGG TI +++ +GA I + +KD
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 90
Score = 79 (32.9 bits), Expect = 9.7e-10, Sum P(3) = 9.7e-10
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
S + G ++ + V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 408 SAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 457
Score = 75 (31.5 bits), Expect = 4.7e-10, Sum P(3) = 4.7e-10
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KD 179
++L+PS + +IIGK G TI +L+ +T +IK++ KD
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 90
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 102 (41.0 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K++ + SGA + + D N E V+TV+ P+ +
Sbjct: 150 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 207
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 208 K-AVE--LIIQ-KIQED 220
Score = 91 (37.1 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRV 83
++ G + ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV
Sbjct: 40 KRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 99
Query: 84 VTI 86
I
Sbjct: 100 CLI 102
Score = 91 (37.1 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 35/141 (24%), Positives = 63/141 (44%)
Query: 140 EECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISG 199
++ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SG
Sbjct: 148 KQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK----PDGINLQE--RVVTVSG 201
Query: 200 ESEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPIL 259
E E +KA + I+ K +ED P + G Y N +L
Sbjct: 202 EPEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVL 255
Query: 260 PSRSVPS-ILGAARVPDLQGY 279
P+ + + +LG A + + +
Sbjct: 256 PTAAAAAGLLGHANLAGVAAF 276
Score = 89 (36.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQKRAAENLI 617
+ G +IGK G+ + + + SGA +++S +RV +SG PEQ R A LI
Sbjct: 157 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELI 213
Score = 85 (35.0 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+GTP +AA+ LI
Sbjct: 407 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 464
Score = 80 (33.2 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
++VL P G +IGKGG TI +++ +GA I + +KD
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 90
Score = 79 (32.9 bits), Expect = 8.0e-10, Sum P(3) = 8.0e-10
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
S + G ++ + V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 384 SAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 433
Score = 75 (31.5 bits), Expect = 5.0e-10, Sum P(3) = 5.0e-10
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KD 179
++L+PS + +IIGK G TI +L+ +T +IK++ KD
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 90
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 106 (42.4 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
+ +V P + G +IGKGG IK IR SGA I +D+ + ++ +IT+T + D I+
Sbjct: 352 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ--DQIQ 409
Query: 368 SMAVEAVLLLQTKI 381
+ A LLQ +
Sbjct: 410 N----AQYLLQNSV 419
Score = 98 (39.6 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 364 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 416
Score = 93 (37.8 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 33/133 (24%), Positives = 62/133 (46%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA-IES 362
++E+V +R+L G VIGKGG IK++R A + V D+ E +++++A E+
Sbjct: 36 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISADTET 93
Query: 363 PDDIKSMAVEAVLLLQT-KINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKAD 421
+I + + Q K +D D + +RLL+ E+R+ T+
Sbjct: 94 IGEILKKIIPTLEEYQHYKGSDFDCE---LRLLIHQSLAGGIIGVKGAKIKELRENTQTT 150
Query: 422 VRISKGDKPKCAD 434
+++ + P D
Sbjct: 151 IKLFQECCPHSTD 163
Score = 89 (36.4 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK LR T+T+IK+ + C D VLI G+
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-------CCPHSTDRVVLIGGK 171
Query: 201 SEAVKKALFAISAIMYKFSP 220
+ V + + I ++++ SP
Sbjct: 172 PDRVVECIKIILDLIFE-SP 190
Score = 85 (35.0 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVLISGES 201
Q+ +P + +IIGK G IK++R ++ SIK+ P + SE D + I+G
Sbjct: 355 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE---------DRIITITGTQ 405
Query: 202 EAVKKALFAISAIMYKFS 219
+ ++ A + + + ++S
Sbjct: 406 DQIQNAQYLLQNSVKQYS 423
Score = 80 (33.2 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 13 DNDRDGKNQKRRINE----KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRA 68
+ + +GK + E K + +E V RIL G+VIGK GK I ++R + A
Sbjct: 12 NTETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNA 71
Query: 69 RVKVVDPFPGAKDRVVTI 86
V V D +R+++I
Sbjct: 72 SVSVPDS--SGPERILSI 87
Score = 76 (31.8 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 13 DNDRDGKNQKRRINEKDE----KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRA 68
D + G+ K+ I +E KG++ R+L + G +IG G I +R+ T+
Sbjct: 90 DTETIGEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQT 149
Query: 69 RVKVVDPF-PGAKDRVVTI 86
+K+ P + DRVV I
Sbjct: 150 TIKLFQECCPHSTDRVVLI 168
Score = 74 (31.1 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
E E +IL+ S + +IGK G IK LR+ S+ V P D+S P ++ D
Sbjct: 38 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD 90
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 102 (41.0 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 24/91 (26%), Positives = 41/91 (45%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITVT 358
G + +L + P GRVIGKGG T+ ++ + A++ V D T D DE V+ +T
Sbjct: 494 GPKEEVKLETHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDEVVVKIT 553
Query: 359 AIESPDDIKSMAVEAVLLLQTKINDEDDDTV 389
+ ++ +L + + TV
Sbjct: 554 GHFYASQLAQRKIQEILAQVRRQQQQQQKTV 584
Score = 97 (39.2 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNF 194
++ E E + +P+ IIGK G IK+L SIK+ P A P M
Sbjct: 414 QQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAP--AEGPDAKLRM----- 466
Query: 195 VLISGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
V+I+G EA KA I + + F P+E++ LET ++
Sbjct: 467 VIITGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIK 506
Score = 90 (36.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 27/121 (22%), Positives = 57/121 (47%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
E+ +R+L P +G +IGK G TI++I + + ++ID+ K+N +T +P+
Sbjct: 205 EVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIH-RKENAGAAEKPITIHSTPEGC 263
Query: 367 KSMAVEAVL-LLQTKINDED-DDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVRI 424
S A + ++ ++Q + D + + +++L +I + T + I
Sbjct: 264 -SAACKIIMEIMQKEAQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITI 322
Query: 425 S 425
S
Sbjct: 323 S 323
Score = 83 (34.3 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A AVG +IGK G ++ + + +GA+I+++ ++ R+ +I+G PE + A+ I
Sbjct: 427 ALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPEAQFKAQGRI 483
Score = 82 (33.9 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 34 EESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
+ V R+L P +G++IGK G I +I ++T++++ + GA ++ +TI+S
Sbjct: 203 QTEVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGAAEKPITIHS 258
Score = 78 (32.5 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L N +GR+IGK G +K I Q + +I + +D
Sbjct: 284 TEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQD 327
Score = 77 (32.2 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 28/139 (20%), Positives = 55/139 (39%)
Query: 304 QSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP 363
Q E + + P +G +IGK G IK + + +GA I + + + + + I P
Sbjct: 415 QPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEG--PDAKLRMVIITGP 472
Query: 364 DDIKSMA---VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKA 420
+ + A + L + +++ + + V NE++ T A
Sbjct: 473 PEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIKVPSYAAGRVIGKGGKTVNELQNLTSA 532
Query: 421 DVRISKGDKPKCADANDEL 439
+V + + P D NDE+
Sbjct: 533 EVVVPRDQTP---DENDEV 548
Score = 68 (29.0 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
+D K EE + +IL + +G +IGK G+ + I Q+T ++ +
Sbjct: 279 QDTKFTEE-IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITI 322
Score = 68 (29.0 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
++LVP+ IIGK GATI+ + +T++ I + K+
Sbjct: 209 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKE 245
Score = 66 (28.3 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCAM 189
D K E+ +IL ++ +IGK G +K++ T T I ++P +D + P + +
Sbjct: 280 DTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITV 339
Query: 190 EFDNFVLISGESEAVKK 206
+ E E +KK
Sbjct: 340 KGSIEPCAKAEEEIMKK 356
Score = 64 (27.6 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 35 ESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRVVTI 86
ES + P +G++IGK G+ I + + A +K+ P AK R+V I
Sbjct: 417 ESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVII 469
Score = 59 (25.8 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVAL-ISGTPEQKRAAENLIQAFI 621
A G+VIGK G + ++ ++ A + + D D V + I+G + A+ IQ +
Sbjct: 511 AAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDEVVVKITGHFYASQLAQRKIQEIL 570
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 111 (44.1 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 151
Query: 361 ESPDDIKSMAVE-AVLLLQTKINDEDDDTVTI 391
P I + V++L+T ++ VTI
Sbjct: 152 --PQSIIECVKQICVVMLET-LSQSPPKGVTI 180
Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 37/138 (26%), Positives = 65/138 (47%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G++ + L IR+L ++G +IGK G ++K +R+ SGA+I++ + N E +IT
Sbjct: 3 TGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAV------EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXX 410
+ + K+ A+ E + T VT+RL+V
Sbjct: 61 LAGPTNAI-FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 411 XNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 120 IKEIRESTGAQVQVA-GD 136
Score = 91 (37.1 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 85 (35.0 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 297 SGLVGASQ--SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+GL ++Q S EL I P + IG +IG+ G I IRQ SGAQI + + + +
Sbjct: 235 AGLDASAQTTSHELTI----PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQ 290
Query: 355 ITVT 358
+T+T
Sbjct: 291 VTIT 294
Score = 79 (32.9 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Score = 78 (32.5 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++++ DR I+G+ A+ LI
Sbjct: 255 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 307
Score = 74 (31.1 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+++VP+SQ ++IGK G IK +R T ++V
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 58 (25.5 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G ++K++R ++ I + SE +C + + ++G +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEG--NCP---ERIITLAGPTN 66
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA FA+ I+ K EDI T
Sbjct: 67 AIFKA-FAM--IIDKLE--EDISSSMT 88
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 111 (44.1 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 151
Query: 361 ESPDDIKSMAVE-AVLLLQTKINDEDDDTVTI 391
P I + V++L+T ++ VTI
Sbjct: 152 --PQSIIECVKQICVVMLET-LSQSPPKGVTI 180
Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 37/138 (26%), Positives = 65/138 (47%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G++ + L IR+L ++G +IGK G ++K +R+ SGA+I++ + N E +IT
Sbjct: 3 TGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAV------EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXX 410
+ + K+ A+ E + T VT+RL+V
Sbjct: 61 LAGPTNAI-FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 411 XNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 120 IKEIRESTGAQVQVA-GD 136
Score = 91 (37.1 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 90 (36.7 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 290 STGLSLVSGLVGASQ--SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTK 347
+TG S +GL ++Q S EL I P + IG +IG+ G I IRQ SGAQI + +
Sbjct: 231 NTGFS--AGLDASAQTTSHELTI----PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 284
Query: 348 DNRDECVITVT 358
+ + +T+T
Sbjct: 285 EGSTDRQVTIT 295
Score = 79 (32.9 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Score = 78 (32.5 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++++ DR I+G+ A+ LI
Sbjct: 256 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 308
Score = 74 (31.1 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+++VP+SQ ++IGK G IK +R T ++V
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 58 (25.5 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G ++K++R ++ I + SE +C + + ++G +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEG--NCP---ERIITLAGPTN 66
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA FA+ I+ K EDI T
Sbjct: 67 AIFKA-FAM--IIDKLE--EDISSSMT 88
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 105 (42.0 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
+ +V P + G +IGKGG IK IR SGA I +D+ + ++ +IT+T + D I+
Sbjct: 352 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ--DQIQ 409
Query: 368 SMAVEAVLLLQTK 380
+ A LLQ +
Sbjct: 410 N----AQYLLQNR 418
Score = 98 (39.6 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 364 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 416
Score = 93 (37.8 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 33/133 (24%), Positives = 62/133 (46%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA-IES 362
++E+V +R+L G VIGKGG IK++R A + V D+ E +++++A E+
Sbjct: 36 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISADTET 93
Query: 363 PDDIKSMAVEAVLLLQT-KINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKAD 421
+I + + Q K +D D + +RLL+ E+R+ T+
Sbjct: 94 IGEILKKIIPTLEEYQHYKGSDFDCE---LRLLIHQSLAGGIIGVKGAKIKELRENTQTT 150
Query: 422 VRISKGDKPKCAD 434
+++ + P D
Sbjct: 151 IKLFQECCPHSTD 163
Score = 89 (36.4 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK LR T+T+IK+ + C D VLI G+
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-------CCPHSTDRVVLIGGK 171
Query: 201 SEAVKKALFAISAIMYKFSP 220
+ V + + I ++++ SP
Sbjct: 172 PDRVVECIKIILDLIFE-SP 190
Score = 82 (33.9 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVLISGES 201
Q+ +P + +IIGK G IK++R ++ SIK+ P + SE D + I+G
Sbjct: 355 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE---------DRIITITGTQ 405
Query: 202 EAVKKALFAI 211
+ ++ A + +
Sbjct: 406 DQIQNAQYLL 415
Score = 80 (33.2 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 13 DNDRDGKNQKRRINE----KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRA 68
+ + +GK + E K + +E V RIL G+VIGK GK I ++R + A
Sbjct: 12 NTETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNA 71
Query: 69 RVKVVDPFPGAKDRVVTI 86
V V D +R+++I
Sbjct: 72 SVSVPDS--SGPERILSI 87
Score = 76 (31.8 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 13 DNDRDGKNQKRRINEKDE----KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRA 68
D + G+ K+ I +E KG++ R+L + G +IG G I +R+ T+
Sbjct: 90 DTETIGEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQT 149
Query: 69 RVKVVDPF-PGAKDRVVTI 86
+K+ P + DRVV I
Sbjct: 150 TIKLFQECCPHSTDRVVLI 168
Score = 74 (31.1 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
E E +IL+ S + +IGK G IK LR+ S+ V P D+S P ++ D
Sbjct: 38 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD 90
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 107 (42.7 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E Q+ +P+ IIGK G IK+L SIK+ P + P M V+I
Sbjct: 404 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRM-----VVI 456
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F P+E++ LET +R
Sbjct: 457 TGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIR 493
Score = 92 (37.4 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
G + +L + P + GRVIGKGG T+ ++ + A++ V D T D D+ ++ +
Sbjct: 481 GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKI 539
Score = 86 (35.3 bits), Expect = 8.6e-06, Sum P(3) = 8.6e-06
Identities = 33/156 (21%), Positives = 65/156 (41%)
Query: 287 PVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--D 344
P TG + S + A + E +++V P +G +IGK G IK + + + A I +
Sbjct: 387 PSSVTGAAPYSSFMQAPEQE--MVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP 444
Query: 345 DTKDNRDECVITVTAIESPDDIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXX 403
+T D++ V+ E+ K+ + L + +++ + + V
Sbjct: 445 ETPDSKVRMVVITGPPEA--QFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRV 502
Query: 404 XXXXXXXXNEIRKRTKADVRISKGDKPKCADANDEL 439
NE++ T A+V + + P D ND++
Sbjct: 503 IGKGGKTVNELQNLTAAEVVVPRDQTP---DENDQV 535
Score = 80 (33.2 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
R+L P +G++IGK G I +I ++T++++ V GA ++ ++++S
Sbjct: 199 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHS 248
Score = 78 (32.5 bits), Expect = 9.7e-07, Sum P(3) = 9.7e-07
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A AVG +IGK G ++ + + + A+I+++ ++ R+ +I+G PE + A+ I
Sbjct: 414 AQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPEAQFKAQGRI 470
Score = 76 (31.8 bits), Expect = 9.7e-07, Sum P(3) = 9.7e-07
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD---NRDECVITVT-AI 360
++E+ +++L N +GR+IGK G +K + Q + +I + +D E ITV AI
Sbjct: 274 ADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAI 333
Query: 361 ES 362
E+
Sbjct: 334 EN 335
Score = 75 (31.5 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 35 ESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDP-FPGAKDRVVTI 86
E + ++ P +G++IGK G+ I + + A +K+ P P +K R+V I
Sbjct: 404 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVI 456
Score = 72 (30.4 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
++LVP+ IIGK GATI+ + +T++ I V K+
Sbjct: 199 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKE 235
Score = 70 (29.7 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
KD K +E V +IL + +G +IGK G+ + + Q+T ++ +
Sbjct: 269 KDTKTADE-VPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITI 312
Score = 58 (25.5 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT 176
D K ++ +IL ++ +IGK G +K++ T T I ++
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITIS 313
Score = 57 (25.1 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRV 600
A+A G+VIGK G + ++ ++ A + + D D+V
Sbjct: 496 ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQV 535
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 132 (51.5 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 60/233 (25%), Positives = 100/233 (42%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G+ IK +R T ++V T + V ISG +
Sbjct: 101 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNST-------ERAVTISGTPD 153
Query: 203 AVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGL-YPNADPILPS 261
A+ + + I +M + SP + + + A G P+ D +
Sbjct: 154 AIIQCVKQICVVMLE-SPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKL 212
Query: 262 RSVPSILGAARVPDLQGY-ADTGNTWPVYST--GLSLVSGLVGASQSEELVIRVLC-PFN 317
+ ++ P Q A G P++S+ +L+ G S L P +
Sbjct: 213 HQL-AMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPND 271
Query: 318 KIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMA 370
IG +IG+ G I IRQ SGAQI + + + E IT+T +P +I S+A
Sbjct: 272 LIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITG--TPANI-SLA 321
Score = 110 (43.8 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E +T++
Sbjct: 92 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG- 150
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
+PD I + V++L++
Sbjct: 151 -TPDAIIQCVKQICVVMLES 169
Score = 98 (39.6 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 38/129 (29%), Positives = 60/129 (46%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD-- 365
L IR+L ++G +IGK G R+ SGA+I++ + N E ++T+T P D
Sbjct: 14 LTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISE--GNCPERIVTITG---PTDAI 68
Query: 366 IKSMAVEAVLLLQTKINDEDDDT------VTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
K+ A+ A + N + T VT+RL+V EIR+ T
Sbjct: 69 FKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 420 ADVRISKGD 428
A V+++ GD
Sbjct: 129 AQVQVA-GD 136
Score = 95 (38.5 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R VTI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 148
Score = 94 (38.1 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I+++++ +R I+GTP A+ LI A
Sbjct: 273 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 327
Score = 64 (27.6 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G + R+++ AR+ + + +R+VTI
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISEG--NCPERIVTI 61
Score = 54 (24.1 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G R ++ I + SE +C + V I+G ++
Sbjct: 17 RLLMHGKEVGSIIGKMGCLHVVTREQSGARINI-----SEG--NCP---ERIVTITGPTD 66
Query: 203 AVKKALFAISAIMYKFSPREDI 224
A+ KA FA+ I YKF EDI
Sbjct: 67 AIFKA-FAM--IAYKFE--EDI 83
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 106 (42.4 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
+ +V P + G +IGKGG IK IR SGA I +D+ + ++ +IT+T + D I+
Sbjct: 369 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ--DQIQ 426
Query: 368 SMAVEAVLLLQTKI 381
+ A LLQ +
Sbjct: 427 N----AQYLLQNSV 436
Score = 98 (39.6 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 381 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 433
Score = 86 (35.3 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK LR T+T+IK+ + C D VLI G+
Sbjct: 149 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-------CCPQSTDRVVLIGGK 201
Query: 201 SEAVKKAL 208
+ V + +
Sbjct: 202 PDRVVECI 209
Score = 85 (35.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVLISGES 201
Q+ +P + +IIGK G IK++R ++ SIK+ P + SE D + I+G
Sbjct: 372 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE---------DRIITITGTQ 422
Query: 202 EAVKKALFAISAIMYKFS 219
+ ++ A + + + ++S
Sbjct: 423 DQIQNAQYLLQNSVKQYS 440
Score = 83 (34.3 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA-IES 362
++E+V +R+L G VIGKGG IK++R A + V D+ E +++++A IE+
Sbjct: 42 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISADIET 99
Query: 363 PDDI 366
+I
Sbjct: 100 IGEI 103
Score = 81 (33.6 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 3 DSGKRYRSQRDNDRDGKNQKRRINE----KDEKGNEESVIYRILCPDGVIGSVIGKSGKV 58
D+ + N GK + E K + +E V RIL G+VIGK GK
Sbjct: 8 DNRRNLSHTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKN 67
Query: 59 INSIRQETRARVKVVDPFPGAKDRVVTI 86
I ++R + A V V D +R+++I
Sbjct: 68 IKALRTDYNASVSVPDS--SGPERILSI 93
Score = 81 (33.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 30/97 (30%), Positives = 45/97 (46%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E E +IL+ S + +IGK G IK LR+ S+ V P D+S P ++ D I
Sbjct: 44 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD----I 97
Query: 198 SGESEAVKKALFAISAIMYKFSPR--EDIPLETTVRE 232
E +KK + + + SP +PLE+ E
Sbjct: 98 ETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVE 134
Score = 79 (32.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 25 INEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRV 83
+N + KG++ R+L + G +IG G I +R+ T+ +K+ P + DRV
Sbjct: 136 LNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRV 195
Query: 84 VTI 86
V I
Sbjct: 196 VLI 198
Score = 41 (19.5 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 15/69 (21%), Positives = 30/69 (43%)
Query: 366 IKSMAVEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVRIS 425
++S AVE + K +D D + +RLL+ E+R+ T+ +++
Sbjct: 128 LESDAVECLNYQHYKGSDFDCE---LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 184
Query: 426 KGDKPKCAD 434
+ P+ D
Sbjct: 185 QECCPQSTD 193
Score = 40 (19.1 bits), Expect = 7.9e-06, Sum P(3) = 7.9e-06
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQ 335
+R+L + G +IG G IK +R+
Sbjct: 150 LRLLIHQSLAGGIIGVKGAKIKELRE 175
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 108 (43.1 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
+ +V P + G +IGKGG IK IR SGA I +D+ + ++ +IT+T + D I+
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ--DQIQ 445
Query: 368 SMAVEAVLLLQTKINDEDD 386
+ A LLQ + D
Sbjct: 446 N----AQYLLQNSVKQYAD 460
Score = 98 (39.6 bits), Expect = 3.7e-10, Sum P(3) = 3.7e-10
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 400 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
Score = 86 (35.3 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK LR T+T+IK+ + C D VLI G+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-------CCPQSTDRVVLIGGK 198
Query: 201 SEAVKKAL 208
+ V + +
Sbjct: 199 PDRVVECI 206
Score = 83 (34.3 bits), Expect = 4.7e-06, Sum P(3) = 4.7e-06
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA-IES 362
++E+V +R+L G VIGKGG IK++R A + V D+ E +++++A IE+
Sbjct: 39 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISADIET 96
Query: 363 PDDI 366
+I
Sbjct: 97 IGEI 100
Score = 83 (34.3 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 21/81 (25%), Positives = 42/81 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVLISGES 201
Q+ +P + +IIGK G IK++R ++ SIK+ P + SE D + I+G
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE---------DRIITITGTQ 441
Query: 202 EAVKKALFAISAIMYKFSPRE 222
+ ++ A + + + +++ E
Sbjct: 442 DQIQNAQYLLQNSVKQYADVE 462
Score = 81 (33.6 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 30/97 (30%), Positives = 45/97 (46%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E E +IL+ S + +IGK G IK LR+ S+ V P D+S P ++ D I
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD----I 94
Query: 198 SGESEAVKKALFAISAIMYKFSPR--EDIPLETTVRE 232
E +KK + + + SP +PLE+ E
Sbjct: 95 ETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVE 131
Score = 79 (32.9 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
K + +E V RIL G+VIGK GK I ++R + A V V D +R+++I
Sbjct: 34 KRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSI 90
Score = 79 (32.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 25 INEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRV 83
+N + KG++ R+L + G +IG G I +R+ T+ +K+ P + DRV
Sbjct: 133 LNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRV 192
Query: 84 VTI 86
V I
Sbjct: 193 VLI 195
Score = 41 (19.5 bits), Expect = 4.7e-06, Sum P(3) = 4.7e-06
Identities = 15/69 (21%), Positives = 30/69 (43%)
Query: 366 IKSMAVEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVRIS 425
++S AVE + K +D D + +RLL+ E+R+ T+ +++
Sbjct: 125 LESDAVECLNYQHYKGSDFDCE---LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLF 181
Query: 426 KGDKPKCAD 434
+ P+ D
Sbjct: 182 QECCPQSTD 190
Score = 40 (19.1 bits), Expect = 9.4e-06, Sum P(3) = 9.4e-06
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQ 335
+R+L + G +IG G IK +R+
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRE 172
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 111 (44.1 bits), Expect = 2.9e-11, Sum P(3) = 2.9e-11
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 151
Query: 361 ESPDDIKSMAVE-AVLLLQTKINDEDDDTVTI 391
P I + V++L+T ++ VTI
Sbjct: 152 --PQSIIECVKQICVVMLET-LSQSPPKGVTI 180
Score = 106 (42.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 37/138 (26%), Positives = 65/138 (47%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G++ + L IR+L ++G +IGK G ++K +R+ SGA+I++ + N E +IT
Sbjct: 3 TGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAV------EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXX 410
+ + K+ A+ E + T VT+RL+V
Sbjct: 61 LAGPTNAI-FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 411 XNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 120 IKEIRESTGAQVQVA-GD 136
Score = 91 (37.1 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 84 (34.6 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 298 GLVGASQ--SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVI 355
GL ++Q S EL I P + IG +IG+ G I IRQ SGAQI + + + + +
Sbjct: 280 GLDASAQTTSHELTI----PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQV 335
Query: 356 TVT 358
T+T
Sbjct: 336 TIT 338
Score = 79 (32.9 bits), Expect = 2.9e-11, Sum P(3) = 2.9e-11
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Score = 78 (32.5 bits), Expect = 2.9e-11, Sum P(3) = 2.9e-11
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++++ DR I+G+ A+ LI
Sbjct: 299 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 351
Score = 74 (31.1 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+++VP+SQ ++IGK G IK +R T ++V
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 58 (25.5 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G ++K++R ++ I + SE +C + + ++G +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEG--NCP---ERIITLAGPTN 66
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA FA+ I+ K EDI T
Sbjct: 67 AIFKA-FAM--IIDKLE--EDISSSMT 88
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 111 (44.1 bits), Expect = 2.9e-11, Sum P(3) = 2.9e-11
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 151
Query: 361 ESPDDIKSMAVE-AVLLLQTKINDEDDDTVTI 391
P I + V++L+T ++ VTI
Sbjct: 152 --PQSIIECVKQICVVMLET-LSQSPPKGVTI 180
Score = 106 (42.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 37/138 (26%), Positives = 65/138 (47%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G++ + L IR+L ++G +IGK G ++K +R+ SGA+I++ + N E +IT
Sbjct: 3 TGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAV------EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXX 410
+ + K+ A+ E + T VT+RL+V
Sbjct: 61 LAGPTNAI-FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 411 XNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 120 IKEIRESTGAQVQVA-GD 136
Score = 91 (37.1 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 84 (34.6 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 298 GLVGASQ--SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVI 355
GL ++Q S EL I P + IG +IG+ G I IRQ SGAQI + + + + +
Sbjct: 280 GLDASAQTTSHELTI----PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQV 335
Query: 356 TVT 358
T+T
Sbjct: 336 TIT 338
Score = 79 (32.9 bits), Expect = 2.9e-11, Sum P(3) = 2.9e-11
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Score = 78 (32.5 bits), Expect = 2.9e-11, Sum P(3) = 2.9e-11
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++++ DR I+G+ A+ LI
Sbjct: 299 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 351
Score = 74 (31.1 bits), Expect = 8.1e-08, Sum P(3) = 8.1e-08
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+++VP+SQ ++IGK G IK +R T ++V
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 58 (25.5 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G ++K++R ++ I + SE +C + + ++G +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEG--NCP---ERIITLAGPTN 66
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA FA+ I+ K EDI T
Sbjct: 67 AIFKA-FAM--IIDKLE--EDISSSMT 88
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 105 (42.0 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK GA IK+L SIK+ P A P S + V+I
Sbjct: 419 EQETVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAP--AEGPDVS-----ERMVII 471
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F+P+E++ LE +R
Sbjct: 472 TGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIR 508
Score = 91 (37.1 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 28/97 (28%), Positives = 52/97 (53%)
Query: 302 ASQSEEL--VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA 359
+SQ+ ++ +R+L P +G +IGK G TIK+I + + +++D+ K+N VT
Sbjct: 179 SSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIH-RKENSGAAEKPVTI 237
Query: 360 IESPDDIKSMAVEAVLLLQTKINDEDD--DTVTIRLL 394
+P+ S A +L + K DE + V +++L
Sbjct: 238 HATPEGT-SEACRMILEIMQKEADETKLAEEVPLKIL 273
Score = 87 (35.7 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
E IRV P + GRVIGKGG T+ ++ + A++ V D T D +E ++ +
Sbjct: 504 EAHIRV--PSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRI 554
Score = 86 (35.3 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAAENLI 617
AVG +IGK G+++ + + +GA+I+++ ++ +R+ +I+G PE + A+ I
Sbjct: 431 AVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 485
Score = 85 (35.0 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
RIL P +G++IGK G I +I ++T++RV + GA ++ VTI++
Sbjct: 190 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHA 239
Score = 83 (34.3 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
K + K E I VPSS + +IGK G T+ L++ T + + P+D
Sbjct: 498 KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRD 541
Score = 82 (33.9 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 29/140 (20%), Positives = 59/140 (42%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD-NRDECVITVTAIE 361
S E+ + + P +G +IGK G IK + + +GA I + + + E ++ +T
Sbjct: 416 SYPEQETVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG-- 473
Query: 362 SPD-DIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
P+ K+ + L + N +++ + + V NE++ T
Sbjct: 474 PPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTS 533
Query: 420 ADVRISKGDKPKCADANDEL 439
A+V + + P D N+E+
Sbjct: 534 AEVIVPRDQTP---DENEEV 550
Score = 77 (32.2 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
E DE E V +IL +G +G +IGK G+ + I ET ++ +
Sbjct: 258 EADETKLAEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITI 303
Score = 75 (31.5 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L +GR+IGK G +K I +G +I + +D
Sbjct: 265 AEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQD 308
Score = 72 (30.4 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+ILVP+ IIGK G TIK + +T++ + + K+ +S A E V I E
Sbjct: 190 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE-----NSGAAEKP--VTIHATPE 242
Query: 203 AVKKALFAISAIMYKFSPR----EDIPLE 227
+A I IM K + E++PL+
Sbjct: 243 GTSEACRMILEIMQKEADETKLAEEVPLK 271
Score = 64 (27.6 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 132 NDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCA 188
++ K E+ +IL + +IGK G +K++ +T T I ++ +D S P +
Sbjct: 260 DETKLAEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTIT 319
Query: 189 MEFDNFVLISGESEAVKK 206
++ S E E +KK
Sbjct: 320 VKGTIEACASAEMEIMKK 337
Score = 46 (21.3 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
++ G+VIGK G + ++ ++ A +
Sbjct: 511 SSTAGRVIGKGGKTVNELQNLTSAEV 536
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 105 (42.0 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK GA IK+L SIK+ P A P S + V+I
Sbjct: 419 EQETVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAP--AEGPDVS-----ERMVII 471
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F+P+E++ LE +R
Sbjct: 472 TGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIR 508
Score = 91 (37.1 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 28/97 (28%), Positives = 52/97 (53%)
Query: 302 ASQSEEL--VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA 359
+SQ+ ++ +R+L P +G +IGK G TIK+I + + +++D+ K+N VT
Sbjct: 179 SSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIH-RKENSGAAEKPVTI 237
Query: 360 IESPDDIKSMAVEAVLLLQTKINDEDD--DTVTIRLL 394
+P+ S A +L + K DE + V +++L
Sbjct: 238 HATPEGT-SEACRMILEIMQKEADETKLAEEVPLKIL 273
Score = 87 (35.7 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
E IRV P + GRVIGKGG T+ ++ + A++ V D T D +E ++ +
Sbjct: 504 EAHIRV--PSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRI 554
Score = 86 (35.3 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAAENLI 617
AVG +IGK G+++ + + +GA+I+++ ++ +R+ +I+G PE + A+ I
Sbjct: 431 AVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 485
Score = 85 (35.0 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
RIL P +G++IGK G I +I ++T++RV + GA ++ VTI++
Sbjct: 190 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHA 239
Score = 83 (34.3 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
K + K E I VPSS + +IGK G T+ L++ T + + P+D
Sbjct: 498 KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRD 541
Score = 82 (33.9 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 29/140 (20%), Positives = 59/140 (42%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD-NRDECVITVTAIE 361
S E+ + + P +G +IGK G IK + + +GA I + + + E ++ +T
Sbjct: 416 SYPEQETVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG-- 473
Query: 362 SPD-DIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
P+ K+ + L + N +++ + + V NE++ T
Sbjct: 474 PPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTS 533
Query: 420 ADVRISKGDKPKCADANDEL 439
A+V + + P D N+E+
Sbjct: 534 AEVIVPRDQTP---DENEEV 550
Score = 77 (32.2 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
E DE E V +IL +G +G +IGK G+ + I ET ++ +
Sbjct: 258 EADETKLAEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITI 303
Score = 75 (31.5 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L +GR+IGK G +K I +G +I + +D
Sbjct: 265 AEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQD 308
Score = 72 (30.4 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+ILVP+ IIGK G TIK + +T++ + + K+ +S A E V I E
Sbjct: 190 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE-----NSGAAEKP--VTIHATPE 242
Query: 203 AVKKALFAISAIMYKFSPR----EDIPLE 227
+A I IM K + E++PL+
Sbjct: 243 GTSEACRMILEIMQKEADETKLAEEVPLK 271
Score = 59 (25.8 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 132 NDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCA 188
++ K E+ +IL + +IGK G +K++ +T T I ++ +D S P +
Sbjct: 260 DETKLAEEVPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTIT 319
Query: 189 MEFDNFVLISGESEAVKK 206
+ + E E +KK
Sbjct: 320 VRGTIEACANAEIEIMKK 337
Score = 46 (21.3 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
++ G+VIGK G + ++ ++ A +
Sbjct: 511 SSTAGRVIGKGGKTVNELQNLTSAEV 536
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 162 (62.1 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 47/153 (30%), Positives = 73/153 (47%)
Query: 70 VKVVDPFPGAKDRVVTIYSHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXX 129
++V + PG +RVVTIYS+ +C A DAL KVH
Sbjct: 1 MRVNEALPGCDERVVTIYSNSEERNRIEDDNEDF----VCPAFDALFKVHDMVVVEEFDD 56
Query: 130 TDNDKKRKEKEECQ------ILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
D+ E E Q +LVPS Q +IGK G I+ LR+ T I+V ++ + P
Sbjct: 57 DDDYNDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV--RNDNLP 114
Query: 184 THSCAMEFDNFVLISGESEAVKKALFAISAIMY 216
+ A+ D + I G+ AV++AL+ ++ ++Y
Sbjct: 115 MCALALSHDELLQIIGDPSAVREALYQVAFLLY 147
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 167 (63.8 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 85/341 (24%), Positives = 144/341 (42%)
Query: 38 IYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHXXXXXXXX 97
++R++ P +G++IG+ G I + +ETRAR+KV+D DR+V I
Sbjct: 75 VFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY-- 132
Query: 98 XXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDNDKKRKEK-EECQILVPSSQSANIIG 156
+ A DA+L+V D+ + ++LV S+Q+ N+IG
Sbjct: 133 ----------MSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIG 182
Query: 157 KAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMY 216
K G+ IK + + S+++ + E T A + + V + GE+ + KAL AI +
Sbjct: 183 KQGSLIKSIVENSGASVRIL---SEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLR 239
Query: 217 KFSPREDI-PL---ETTVREAXXXXXXXXXXXXXXXGGLYPNA---DPILPSRSVPSILG 269
+F + PL + R + + N D L +R P L
Sbjct: 240 RFLVDHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTISSNLMEPDFSLLARREPLFLE 299
Query: 270 A-ARVPD-LQ--GYADTGNTWPV----YSTGLSLVSGLVGASQSEELVIRVLCPFNKIGR 321
+RV +Q G + PV +S GL+ VS S+ + I PF+
Sbjct: 300 RDSRVDSRVQPSGVSIYSQD-PVLSARHSPGLARVSSAFVTQVSQTMQI----PFSYAED 354
Query: 322 VIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIES 362
+IG G I IR+ SGA I + ++ + D+ + + S
Sbjct: 355 IIGVEGANIAYIRRRSGATITIKESP-HPDQITVEIKGTTS 394
Score = 129 (50.5 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 42/144 (29%), Positives = 70/144 (48%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
+ V R++ P K+G +IG+ G IK + + + A+I V D N + ++ ++ E P+
Sbjct: 73 DCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132
Query: 367 KSMAVEAVLLLQTKIN---DEDDDTV--------TIRLLVXXXXXXXXXXXXXXXXNEIR 415
S A++AVL + +++ D DDD V ++RLLV I
Sbjct: 133 MSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIV 192
Query: 416 KRTKADVRI-SKGDKPKCADANDE 438
+ + A VRI S+ + P A A DE
Sbjct: 193 ENSGASVRILSEEETPFYA-AQDE 215
Score = 102 (41.0 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVAL-ISGTPEQKRAAENLIQAFIM 622
+IG G+N+A IR+ SGATI + +S D++ + I GT Q + AE LIQ FI+
Sbjct: 355 IIGVEGANIAYIRRRSGATITIKESPHP--DQITVEIKGTTSQVQTAEQLIQEFII 408
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 106 (42.4 bits), Expect = 4.2e-11, Sum P(3) = 4.2e-11
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
+ +V P + G +IGKGG IK IR SGA I +D+ + ++ +IT+T + D I+
Sbjct: 351 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ--DQIQ 408
Query: 368 SMAVEAVLLLQTKI 381
+ A LLQ +
Sbjct: 409 N----AQYLLQNSV 418
Score = 98 (39.6 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 363 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 415
Score = 98 (39.6 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 34/133 (25%), Positives = 63/133 (47%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA-IES 362
++E+V +R+L G VIGKGG IK++R A + V D+ E +++++A IE+
Sbjct: 36 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISADIET 93
Query: 363 PDDIKSMAVEAVLLLQT-KINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKAD 421
+I + + Q K +D D + +RLL+ E+R+ T+
Sbjct: 94 IGEILKKIIPTLEEYQHYKGSDFDCE---LRLLIHQSLAGGIIGVKGAKIKELRENTQTT 150
Query: 422 VRISKGDKPKCAD 434
+++ + P D
Sbjct: 151 IKLFQECCPHSTD 163
Score = 85 (35.0 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVLISGES 201
Q+ +P + +IIGK G IK++R ++ SIK+ P + SE D + I+G
Sbjct: 354 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE---------DRIITITGTQ 404
Query: 202 EAVKKALFAISAIMYKFS 219
+ ++ A + + + ++S
Sbjct: 405 DQIQNAQYLLQNSVKQYS 422
Score = 84 (34.6 bits), Expect = 4.2e-11, Sum P(3) = 4.2e-11
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK LR T+T+IK+ + C D VLI G+
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-------CCPHSTDRVVLIGGK 171
Query: 201 SEAVKKAL 208
+ V + +
Sbjct: 172 PDRVVECI 179
Score = 80 (33.2 bits), Expect = 4.2e-11, Sum P(3) = 4.2e-11
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 13 DNDRDGKNQKRRINE----KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRA 68
+ + +GK + E K + +E V RIL G+VIGK GK I ++R + A
Sbjct: 12 NTETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNA 71
Query: 69 RVKVVDPFPGAKDRVVTI 86
V V D +R+++I
Sbjct: 72 SVSVPDS--SGPERILSI 87
Score = 75 (31.5 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 31 KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRVVTI 86
KG++ R+L + G +IG G I +R+ T+ +K+ P + DRVV I
Sbjct: 112 KGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLI 168
Score = 74 (31.1 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
E E +IL+ S + +IGK G IK LR+ S+ V P D+S P ++ D
Sbjct: 38 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD 90
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 106 (42.4 bits), Expect = 4.2e-11, Sum P(3) = 4.2e-11
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
+ +V P + G +IGKGG IK IR SGA I +D+ + ++ +IT+T + D I+
Sbjct: 352 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ--DQIQ 409
Query: 368 SMAVEAVLLLQTKI 381
+ A LLQ +
Sbjct: 410 N----AQYLLQNSV 419
Score = 98 (39.6 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 364 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 416
Score = 93 (37.8 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 33/133 (24%), Positives = 62/133 (46%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA-IES 362
++E+V +R+L G VIGKGG IK++R A + V D+ E +++++A E+
Sbjct: 36 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISADTET 93
Query: 363 PDDIKSMAVEAVLLLQT-KINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKAD 421
+I + + Q K +D D + +RLL+ E+R+ T+
Sbjct: 94 IGEILKKIIPTLEEYQHYKGSDFDCE---LRLLIHQSLAGGIIGVKGAKIKELRENTQTT 150
Query: 422 VRISKGDKPKCAD 434
+++ + P D
Sbjct: 151 IKLFQECCPHSTD 163
Score = 85 (35.0 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVLISGES 201
Q+ +P + +IIGK G IK++R ++ SIK+ P + SE D + I+G
Sbjct: 355 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE---------DRIITITGTQ 405
Query: 202 EAVKKALFAISAIMYKFS 219
+ ++ A + + + ++S
Sbjct: 406 DQIQNAQYLLQNSVKQYS 423
Score = 84 (34.6 bits), Expect = 4.2e-11, Sum P(3) = 4.2e-11
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK LR T+T+IK+ + C D VLI G+
Sbjct: 119 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-------CCPHSTDRVVLIGGK 171
Query: 201 SEAVKKAL 208
+ V + +
Sbjct: 172 PDRVVECI 179
Score = 80 (33.2 bits), Expect = 4.2e-11, Sum P(3) = 4.2e-11
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 13 DNDRDGKNQKRRINE----KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRA 68
+ + +GK + E K + +E V RIL G+VIGK GK I ++R + A
Sbjct: 12 NTETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNA 71
Query: 69 RVKVVDPFPGAKDRVVTI 86
V V D +R+++I
Sbjct: 72 SVSVPDS--SGPERILSI 87
Score = 76 (31.8 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 13 DNDRDGKNQKRRINEKDE----KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRA 68
D + G+ K+ I +E KG++ R+L + G +IG G I +R+ T+
Sbjct: 90 DTETIGEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQT 149
Query: 69 RVKVVDPF-PGAKDRVVTI 86
+K+ P + DRVV I
Sbjct: 150 TIKLFQECCPHSTDRVVLI 168
Score = 74 (31.1 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
E E +IL+ S + +IGK G IK LR+ S+ V P D+S P ++ D
Sbjct: 38 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD 90
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 111 (44.1 bits), Expect = 5.3e-11, Sum P(3) = 5.3e-11
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 73 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 132
Query: 361 ESPDDIKSMAVE-AVLLLQTKINDEDDDTVTI 391
P I + V++L+T ++ VTI
Sbjct: 133 --PQSIIECVKQICVVMLET-LSQSPPKGVTI 161
Score = 91 (37.1 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 79 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 129
Score = 89 (36.4 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 318 KIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAV------ 371
++G +IGK G ++K +R+ SGA+I++ + N E +IT+ + K+ A+
Sbjct: 5 EVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAI-FKAFAMIIDKLE 61
Query: 372 EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVRISKGD 428
E + T VT+RL+V EIR+ T A V+++ GD
Sbjct: 62 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA-GD 117
Score = 84 (34.6 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 298 GLVGASQ--SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVI 355
GL ++Q S EL I P + IG +IG+ G I IRQ SGAQI + + + + +
Sbjct: 216 GLDASAQTTSHELTI----PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQV 271
Query: 356 TVT 358
T+T
Sbjct: 272 TIT 274
Score = 78 (32.5 bits), Expect = 5.3e-11, Sum P(3) = 5.3e-11
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++++ DR I+G+ A+ LI
Sbjct: 235 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 287
Score = 74 (31.1 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+++VP+SQ ++IGK G IK +R T ++V
Sbjct: 82 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 114
Score = 72 (30.4 bits), Expect = 5.3e-11, Sum P(3) = 5.3e-11
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 48 IGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
+GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 6 VGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 42
Score = 52 (23.4 bits), Expect = 5.5e-09, Sum P(3) = 5.5e-09
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAIS 212
+IIGK G ++K++R ++ I + SE +C + + ++G + A+ KA FA+
Sbjct: 8 SIIGKKGESVKKMREESGARINI-----SEG--NCP---ERIITLAGPTNAIFKA-FAM- 55
Query: 213 AIMYKFSPREDIPLETT 229
I+ K EDI T
Sbjct: 56 -IIDKLE--EDISSSMT 69
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 102 (41.0 bits), Expect = 6.0e-11, Sum P(3) = 6.0e-11
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K++ + SGA + + D N E V+TV+ P+ +
Sbjct: 177 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 234
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 235 K-AVE--LIIQ-KIQED 247
Score = 90 (36.7 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 35/140 (25%), Positives = 62/140 (44%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
+ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SGE
Sbjct: 176 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK----PDGINLQE--RVVTVSGE 229
Query: 201 SEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPILP 260
E +KA + I+ K +ED P + G Y N +LP
Sbjct: 230 PEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP 283
Query: 261 SRSVPS-ILGAARVPDLQGY 279
+ + + +LG A + + +
Sbjct: 284 TAAAAAGLLGHANLAGVAAF 303
Score = 89 (36.4 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQKRAAENLI 617
+ G +IGK G+ + + + SGA +++S +RV +SG PEQ R A LI
Sbjct: 184 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELI 240
Score = 85 (35.0 bits), Expect = 6.0e-11, Sum P(3) = 6.0e-11
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+GTP +AA+ LI
Sbjct: 434 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 491
Score = 85 (35.0 bits), Expect = 6.0e-11, Sum P(3) = 6.0e-11
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV------DPFPGAK 80
++ G + ++L P GS+IGK G+ I +++ET A +K+ D +PG
Sbjct: 40 KRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTT 99
Query: 81 DRVVTI 86
+RV I
Sbjct: 100 ERVCLI 105
Score = 82 (33.9 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+PS + +IIGK G TI +L+ +T +IK++ S+ + E LI G E
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTE--RVCLIQGTVE 110
Query: 203 AV 204
A+
Sbjct: 111 AL 112
Score = 79 (32.9 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
S + G ++ + V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 411 SAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 460
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 144 (55.7 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 48/188 (25%), Positives = 82/188 (43%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRV 83
++ G E ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV
Sbjct: 23 KRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 82
Query: 84 VTIYSHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDNDKKRKEKEECQ 143
+ + A+ K + D+ ++ K
Sbjct: 83 CLVQG----TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAK---- 134
Query: 144 ILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEA 203
++VP+S + IIGK GAT+K + ++ ++++ K P E V +SGE E
Sbjct: 135 LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK----PEGINLQE--RVVTVSGEPEQ 188
Query: 204 VKKALFAI 211
V KA+ AI
Sbjct: 189 VHKAVSAI 196
Score = 93 (37.8 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 311 RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIKS 368
+++ P + G +IGKGG T+K++ + SGA + + + N E V+TV+ P+ +
Sbjct: 134 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSG--EPEQVHK 191
Query: 369 MAVEAVL 375
AV A++
Sbjct: 192 -AVSAIV 197
Score = 86 (35.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD---NRDE--CVITVTAIE 361
E ++VL P G +IGKGG TI +++ +GA I + +KD E C++ TA E
Sbjct: 32 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTA-E 90
Query: 362 SPDDIKSMAVEAV 374
+ + + S E V
Sbjct: 91 ALNAVHSFIAEKV 103
Score = 84 (34.6 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDS----KSSRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R RV I+G+P +AA+ LI
Sbjct: 416 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVT-ITGSPAATQAAQYLI 473
Score = 81 (33.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 290 STGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
+ G L + + A ++ELV + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 390 AAGGFLTAEKLAAESAKELV-EIAVPENLVGAILGKGGKTLVEYQELTGARIQI 442
Score = 79 (32.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQ-KRAAENLIQ 618
+ G +IGK G+ + + + SGA +++S +RV +SG PEQ +A ++Q
Sbjct: 140 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQ 198
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 37/138 (26%), Positives = 65/138 (47%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G++ + L IR+L ++G +IGK G ++K +R+ SGA+I++ + N E +IT
Sbjct: 3 TGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAV------EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXX 410
+ + K+ A+ E + T VT+RL+V
Sbjct: 61 LAGPTNAI-FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 411 XNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 120 IKEIRESTGAQVQVA-GD 136
Score = 105 (42.0 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 151
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
P I + V++L++
Sbjct: 152 --PQSIIECVKQICVVMLES 169
Score = 91 (37.1 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 90 (36.7 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 290 STGLSLVSGLVGASQ--SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTK 347
+TG S +GL ++Q S EL I P + IG +IG+ G I IRQ SGAQI + +
Sbjct: 227 NTGFS--AGLDASAQTTSHELTI----PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV 280
Query: 348 DNRDECVITVT 358
+ + +T+T
Sbjct: 281 EGSTDRQVTIT 291
Score = 79 (32.9 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Score = 78 (32.5 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++++ DR I+G+ A+ LI
Sbjct: 252 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 304
Score = 76 (31.8 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G IK +R T ++V T + + I+G +
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST-------ERAITIAGIPQ 153
Query: 203 AVKKALFAISAIMYKFSPR 221
++ + + I +M + P+
Sbjct: 154 SIIECVKQICVVMLESPPK 172
Score = 58 (25.5 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G ++K++R ++ I + SE +C + + ++G +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEG--NCP---ERIITLAGPTN 66
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA FA+ I+ K EDI T
Sbjct: 67 AIFKA-FAM--IIDKLE--EDISSSMT 88
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 106 (42.4 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
+ +V P + G +IGKGG IK IR SGA I +D+ + ++ +IT+T + D I+
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ--DQIQ 445
Query: 368 SMAVEAVLLLQTKI 381
+ A LLQ +
Sbjct: 446 N----AQYLLQNSV 455
Score = 98 (39.6 bits), Expect = 5.9e-10, Sum P(3) = 5.9e-10
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 400 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
Score = 85 (35.0 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVLISGES 201
Q+ +P + +IIGK G IK++R ++ SIK+ P + SE D + I+G
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE---------DRIITITGTQ 441
Query: 202 EAVKKALFAISAIMYKFS 219
+ ++ A + + + ++S
Sbjct: 442 DQIQNAQYLLQNSVKQYS 459
Score = 84 (34.6 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK LR T+T+IK+ + C D VLI G+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-------CCPHSTDRVVLIGGK 198
Query: 201 SEAVKKAL 208
+ V + +
Sbjct: 199 PDRVVECI 206
Score = 83 (34.3 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA-IES 362
++E+V +R+L G VIGKGG IK++R A + V D+ E +++++A IE+
Sbjct: 39 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISADIET 96
Query: 363 PDDI 366
+I
Sbjct: 97 IGEI 100
Score = 81 (33.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 30/97 (30%), Positives = 45/97 (46%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E E +IL+ S + +IGK G IK LR+ S+ V P D+S P ++ D I
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD----I 94
Query: 198 SGESEAVKKALFAISAIMYKFSPR--EDIPLETTVRE 232
E +KK + + + SP +PLE+ E
Sbjct: 95 ETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVE 131
Score = 79 (32.9 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
K + +E V RIL G+VIGK GK I ++R + A V V D +R+++I
Sbjct: 34 KRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSI 90
Score = 79 (32.9 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 25 INEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRV 83
+N + KG++ R+L + G +IG G I +R+ T+ +K+ P + DRV
Sbjct: 133 LNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRV 192
Query: 84 VTI 86
V I
Sbjct: 193 VLI 195
Score = 40 (19.1 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQ 335
+R+L + G +IG G IK +R+
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRE 172
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 106 (42.4 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
+ +V P + G +IGKGG IK IR SGA I +D+ + ++ +IT+T + D I+
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ--DQIQ 445
Query: 368 SMAVEAVLLLQTKI 381
+ A LLQ +
Sbjct: 446 N----AQYLLQNSV 455
Score = 98 (39.6 bits), Expect = 5.9e-10, Sum P(3) = 5.9e-10
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 400 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
Score = 85 (35.0 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVLISGES 201
Q+ +P + +IIGK G IK++R ++ SIK+ P + SE D + I+G
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE---------DRIITITGTQ 441
Query: 202 EAVKKALFAISAIMYKFS 219
+ ++ A + + + ++S
Sbjct: 442 DQIQNAQYLLQNSVKQYS 459
Score = 84 (34.6 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK LR T+T+IK+ + C D VLI G+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-------CCPHSTDRVVLIGGK 198
Query: 201 SEAVKKAL 208
+ V + +
Sbjct: 199 PDRVVECI 206
Score = 83 (34.3 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA-IES 362
++E+V +R+L G VIGKGG IK++R A + V D+ E +++++A IE+
Sbjct: 39 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISADIET 96
Query: 363 PDDI 366
+I
Sbjct: 97 IGEI 100
Score = 81 (33.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 30/97 (30%), Positives = 45/97 (46%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E E +IL+ S + +IGK G IK LR+ S+ V P D+S P ++ D I
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD----I 94
Query: 198 SGESEAVKKALFAISAIMYKFSPR--EDIPLETTVRE 232
E +KK + + + SP +PLE+ E
Sbjct: 95 ETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVE 131
Score = 79 (32.9 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
K + +E V RIL G+VIGK GK I ++R + A V V D +R+++I
Sbjct: 34 KRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSI 90
Score = 79 (32.9 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 25 INEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRV 83
+N + KG++ R+L + G +IG G I +R+ T+ +K+ P + DRV
Sbjct: 133 LNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRV 192
Query: 84 VTI 86
V I
Sbjct: 193 VLI 195
Score = 40 (19.1 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQ 335
+R+L + G +IG G IK +R+
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRE 172
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 106 (42.4 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
+ +V P + G +IGKGG IK IR SGA I +D+ + ++ +IT+T + D I+
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ--DQIQ 445
Query: 368 SMAVEAVLLLQTKI 381
+ A LLQ +
Sbjct: 446 N----AQYLLQNSV 455
Score = 98 (39.6 bits), Expect = 5.9e-10, Sum P(3) = 5.9e-10
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 400 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 452
Score = 85 (35.0 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVLISGES 201
Q+ +P + +IIGK G IK++R ++ SIK+ P + SE D + I+G
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE---------DRIITITGTQ 441
Query: 202 EAVKKALFAISAIMYKFS 219
+ ++ A + + + ++S
Sbjct: 442 DQIQNAQYLLQNSVKQYS 459
Score = 84 (34.6 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK LR T+T+IK+ + C D VLI G+
Sbjct: 146 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-------CCPHSTDRVVLIGGK 198
Query: 201 SEAVKKAL 208
+ V + +
Sbjct: 199 PDRVVECI 206
Score = 83 (34.3 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA-IES 362
++E+V +R+L G VIGKGG IK++R A + V D+ E +++++A IE+
Sbjct: 39 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISADIET 96
Query: 363 PDDI 366
+I
Sbjct: 97 IGEI 100
Score = 81 (33.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 30/97 (30%), Positives = 45/97 (46%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E E +IL+ S + +IGK G IK LR+ S+ V P D+S P ++ D I
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD----I 94
Query: 198 SGESEAVKKALFAISAIMYKFSPR--EDIPLETTVRE 232
E +KK + + + SP +PLE+ E
Sbjct: 95 ETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVE 131
Score = 79 (32.9 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
K + +E V RIL G+VIGK GK I ++R + A V V D +R+++I
Sbjct: 34 KRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSI 90
Score = 79 (32.9 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 25 INEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRV 83
+N + KG++ R+L + G +IG G I +R+ T+ +K+ P + DRV
Sbjct: 133 LNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRV 192
Query: 84 VTI 86
V I
Sbjct: 193 VLI 195
Score = 40 (19.1 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQ 335
+R+L + G +IG G IK +R+
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRE 172
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 119 (46.9 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 49/217 (22%), Positives = 92/217 (42%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G IK +R T ++V T + + I+G +
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST-------ERAITIAGIPQ 153
Query: 203 AVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPILPSR 262
++ + + I +M + SP + + + + + G Y P L ++
Sbjct: 154 SIIECVKQICVVMLE-SPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQ-YAIPQPDL-TK 210
Query: 263 SVPSILGAARVPDLQGYADTGNTWPVYSTGLSLVSGLVGASQSEELVIRVLC-PFNKIGR 321
+ + P G +TG + + S+ + G S + L P + IG
Sbjct: 211 LHQLAMQQSHFPMTHG--NTGFSG-IESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGC 267
Query: 322 VIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
+IG+ G I IRQ SGAQI + + + + +T+T
Sbjct: 268 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 304
Score = 106 (42.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 37/138 (26%), Positives = 65/138 (47%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G++ + L IR+L ++G +IGK G ++K +R+ SGA+I++ + N E +IT
Sbjct: 3 TGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAV------EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXX 410
+ + K+ A+ E + T VT+RL+V
Sbjct: 61 LAGPTNAI-FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 411 XNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 120 IKEIRESTGAQVQVA-GD 136
Score = 105 (42.0 bits), Expect = 8.5e-11, Sum P(3) = 8.5e-11
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 151
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
P I + V++L++
Sbjct: 152 --PQSIIECVKQICVVMLES 169
Score = 91 (37.1 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 79 (32.9 bits), Expect = 8.5e-11, Sum P(3) = 8.5e-11
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Score = 78 (32.5 bits), Expect = 8.5e-11, Sum P(3) = 8.5e-11
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++++ DR I+G+ A+ LI
Sbjct: 265 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 317
Score = 58 (25.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G ++K++R ++ I + SE +C + + ++G +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEG--NCP---ERIITLAGPTN 66
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA FA+ I+ K EDI T
Sbjct: 67 AIFKA-FAM--IIDKLE--EDISSSMT 88
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 144 (55.7 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 48/188 (25%), Positives = 82/188 (43%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRV 83
++ G E ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV
Sbjct: 85 KRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 144
Query: 84 VTIYSHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDNDKKRKEKEECQ 143
+ + A+ K + D+ ++ K
Sbjct: 145 CLVQG----TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAK---- 196
Query: 144 ILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEA 203
++VP+S + IIGK GAT+K + ++ ++++ K P E V +SGE E
Sbjct: 197 LIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK----PEGINLQE--RVVTVSGEPEQ 250
Query: 204 VKKALFAI 211
V KA+ AI
Sbjct: 251 VHKAVSAI 258
Score = 93 (37.8 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 311 RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIKS 368
+++ P + G +IGKGG T+K++ + SGA + + + N E V+TV+ P+ +
Sbjct: 196 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSG--EPEQVHK 253
Query: 369 MAVEAVL 375
AV A++
Sbjct: 254 -AVSAIV 259
Score = 87 (35.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 28/108 (25%), Positives = 50/108 (46%)
Query: 272 RVPDLQGYADTGNTWPVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIK 331
+ P ++ A P+ + + + + E ++VL P G +IGKGG TI
Sbjct: 59 QAPPMESEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIV 118
Query: 332 SIRQASGAQIDVDDTKD---NRDE--CVITVTAIESPDDIKSMAVEAV 374
+++ +GA I + +KD E C++ TA E+ + + S E V
Sbjct: 119 QLQKETGATIKLSKSKDFYPGTTERVCLVQGTA-EALNAVHSFIAEKV 165
Score = 84 (34.6 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDS----KSSRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R RV I+G+P +AA+ LI
Sbjct: 478 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVT-ITGSPAATQAAQYLI 535
Score = 81 (33.6 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 290 STGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
+ G L + + A ++ELV + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 452 AAGGFLTAEKLAAESAKELV-EIAVPENLVGAILGKGGKTLVEYQELTGARIQI 504
Score = 79 (32.9 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQ-KRAAENLIQ 618
+ G +IGK G+ + + + SGA +++S +RV +SG PEQ +A ++Q
Sbjct: 202 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQ 260
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 95 (38.5 bits), Expect = 9.3e-11, Sum P(3) = 9.3e-11
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITVT 358
G + +L + P GRVIGKGG T+ ++ + A++ V D T D D+ V+ +T
Sbjct: 485 GPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKIT 544
Score = 92 (37.4 bits), Expect = 9.3e-11, Sum P(3) = 9.3e-11
Identities = 31/100 (31%), Positives = 47/100 (47%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNF 194
++ E E + +P+ IIGK G IK+L SIK+ P A P M
Sbjct: 405 QQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAP--AEGPDAKLRM----- 457
Query: 195 VLISGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
V+I+G EA KA I + + F P+E++ LE ++
Sbjct: 458 VIITGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLEAHIK 497
Score = 87 (35.7 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 26/121 (21%), Positives = 57/121 (47%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
++ +R+L P +G +IGK G TI++I + + ++ID+ K+N +T +P+
Sbjct: 196 DVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIH-RKENAGAAEKPITIHSTPEGC 254
Query: 367 KSMAVEAVL-LLQTKINDED-DDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVRI 424
S A + ++ ++Q + D + + +++L +I + T + I
Sbjct: 255 -STACKIIMEIMQKEAQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITI 313
Query: 425 S 425
S
Sbjct: 314 S 314
Score = 86 (35.3 bits), Expect = 9.3e-11, Sum P(3) = 9.3e-11
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 5 GKRYRSQRDNDRDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQ 64
G+R QR R G + +K + V R+L P +G++IGK G I +I +
Sbjct: 170 GRRGFGQRGPPRQG-SPSATTRQKPQS----DVPLRMLVPTQFVGAIIGKEGATIRNITK 224
Query: 65 ETRARVKVV-DPFPGAKDRVVTIYS 88
+T++++ + GA ++ +TI+S
Sbjct: 225 QTQSKIDIHRKENAGAAEKPITIHS 249
Score = 83 (34.3 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A AVG +IGK G ++ + + +GA+I+++ ++ R+ +I+G PE + A+ I
Sbjct: 418 ALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPEAQFKAQGRI 474
Score = 78 (32.5 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L N +GR+IGK G +K I Q + +I + +D
Sbjct: 275 TEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQD 318
Score = 78 (32.5 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
K + K E I VPS + +IGK G T+ L++ T + V P+D
Sbjct: 487 KEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRD 530
Score = 74 (31.1 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 27/139 (19%), Positives = 55/139 (39%)
Query: 304 QSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP 363
Q E + + P +G +IGK G IK + + +GA I + + + + + I P
Sbjct: 406 QPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEG--PDAKLRMVIITGP 463
Query: 364 DDIKSMA---VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKA 420
+ + A + L + +++ + + V NE++ T A
Sbjct: 464 PEAQFKAQGRIYGKLKEENFFGPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSA 523
Query: 421 DVRISKGDKPKCADANDEL 439
+V + + P D ND++
Sbjct: 524 EVVVPRDQTP---DENDQV 539
Score = 68 (29.0 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
+D K EE + +IL + +G +IGK G+ + I Q+T ++ +
Sbjct: 270 QDTKFTEE-IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITI 313
Score = 68 (29.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCAM 189
D K E+ +IL ++ +IGK G +K++ T T I ++P +D + P + +
Sbjct: 271 DTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITV 330
Query: 190 EFDNFVLISGESEAVKK 206
+ E E +KK
Sbjct: 331 KGSIETCAKAEEEIMKK 347
Score = 68 (29.0 bits), Expect = 2.3e-06, Sum P(4) = 2.3e-06
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
++LVP+ IIGK GATI+ + +T++ I + K+
Sbjct: 200 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKE 236
Score = 57 (25.1 bits), Expect = 6.5e-07, Sum P(3) = 6.5e-07
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVAL-ISGTPEQKRAAENLIQAFI 621
A G+VIGK G + ++ ++ A + + D D+V + I+G + A+ IQ +
Sbjct: 502 AAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKITGHFYACQLAQRKIQEIL 561
Score = 38 (18.4 bits), Expect = 2.3e-06, Sum P(4) = 2.3e-06
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 47 VIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
V+ S++ + G V N + T VV+ G KD+
Sbjct: 96 VLDSLLAQYGTVENCEQVNTDTETAVVNVTYGNKDQ 131
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 103 (41.3 bits), Expect = 9.5e-11, Sum P(3) = 9.5e-11
Identities = 32/97 (32%), Positives = 47/97 (48%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK G IK+L SIK+ P + P M V+I
Sbjct: 403 EQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRM-----VVI 455
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F P+E++ LET +R
Sbjct: 456 TGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIR 492
Score = 88 (36.0 bits), Expect = 9.5e-11, Sum P(3) = 9.5e-11
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
G + +L + P + GRVIGKGG T+ ++ + A++ V D T D ++ ++ +
Sbjct: 480 GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENEQVIVKI 538
Score = 81 (33.6 bits), Expect = 9.5e-11, Sum P(3) = 9.5e-11
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
R+L P +G++IGK G I +I ++T++++ V GA ++ ++I+S
Sbjct: 199 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISIHS 248
Score = 78 (32.5 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A AVG +IGK G ++ + + + A+I+++ ++ R+ +I+G PE + A+ I
Sbjct: 413 AQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPEAQFKAQGRI 469
Score = 75 (31.5 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 32/152 (21%), Positives = 61/152 (40%)
Query: 294 SLVSGLVGASQ---SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKD 348
S VSG S E+ + V P +G +IGK G IK + + + A I + +T D
Sbjct: 388 SSVSGAAPYSSFMPPEQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPD 447
Query: 349 NRDECVITVTAIESPDDIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXX 407
++ V+ E+ K+ + L + +++ + + V
Sbjct: 448 SKVRMVVITGPPEA--QFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKG 505
Query: 408 XXXXNEIRKRTKADVRISKGDKPKCADANDEL 439
NE++ T A+V + + P D N+++
Sbjct: 506 GKTVNELQNLTAAEVVVPRDQTP---DENEQV 534
Score = 73 (30.8 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
++E+ +++L N +GR+IGK G +K + Q + +I + +D
Sbjct: 274 ADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQD 317
Score = 70 (29.7 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
KD K +E V +IL + +G +IGK G+ + + Q+T ++ +
Sbjct: 269 KDTKTADE-VPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITI 312
Score = 58 (25.5 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT 176
D K ++ +IL ++ +IGK G +K++ T T I ++
Sbjct: 270 DTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITIS 313
Score = 53 (23.7 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
A+A G+VIGK G + ++ ++ A +
Sbjct: 495 ASAAGRVIGKGGKTVNELQNLTAAEV 520
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 106 (42.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 37/138 (26%), Positives = 65/138 (47%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G++ + L IR+L ++G +IGK G ++K +R+ SGA+I++ + N E +IT
Sbjct: 3 TGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAV------EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXX 410
+ + K+ A+ E + T VT+RL+V
Sbjct: 61 LAGPTNAI-FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 411 XNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 120 IKEIRESTGAQVQVA-GD 136
Score = 105 (42.0 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 151
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
P I + V++L++
Sbjct: 152 --PQSIIECVKQICVVMLES 169
Score = 91 (37.1 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 85 (35.0 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 297 SGLVGASQ--SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+GL ++Q S EL I P + IG +IG+ G I IRQ SGAQI + + + +
Sbjct: 276 AGLDASAQTTSHELTI----PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQ 331
Query: 355 ITVT 358
+T+T
Sbjct: 332 VTIT 335
Score = 79 (32.9 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Score = 78 (32.5 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++++ DR I+G+ A+ LI
Sbjct: 296 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 348
Score = 76 (31.8 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G IK +R T ++V T + + I+G +
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST-------ERAITIAGIPQ 153
Query: 203 AVKKALFAISAIMYKFSPR 221
++ + + I +M + P+
Sbjct: 154 SIIECVKQICVVMLESPPK 172
Score = 58 (25.5 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G ++K++R ++ I + SE +C + + ++G +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEG--NCP---ERIITLAGPTN 66
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA FA+ I+ K EDI T
Sbjct: 67 AIFKA-FAM--IIDKLE--EDISSSMT 88
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 96 (38.9 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 32/101 (31%), Positives = 49/101 (48%)
Query: 134 KKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDN 193
+++ E E + +P+ IIGK G IK+L SIK+ P +A P M
Sbjct: 401 EQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA--PDAKVRM---- 454
Query: 194 FVLISGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
V+I+G EA KA I + + SP+E++ LE +R
Sbjct: 455 -VIITGPPEAQFKAQGRIYGKIKEENFVSPKEEVKLEAHIR 494
Score = 95 (38.5 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 300 VGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
V + +L + P GRVIGKGG T+ ++ S A++ V D T D D+ V+ +
Sbjct: 481 VSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDENDQVVVKI 540
Query: 358 T 358
T
Sbjct: 541 T 541
Score = 81 (33.6 bits), Expect = 7.8e-07, Sum P(3) = 7.8e-07
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A +VG +IGK G ++ + + +GA+I+++ +++ R+ +I+G PE + A+ I
Sbjct: 415 ALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKAQGRI 471
Score = 80 (33.2 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
R+L P +G++IGK G I +I ++T++++ V GA ++ +TI S
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILS 248
Score = 78 (32.5 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 26/139 (18%), Positives = 58/139 (41%)
Query: 304 QSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP 363
QSE + + P +G +IGK G IK + + +GA I + + + + + I P
Sbjct: 403 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAE--APDAKVRMVIITGP 460
Query: 364 DDIKSMA---VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKA 420
+ + A + + + ++ +++ + + V NE++ + A
Sbjct: 461 PEAQFKAQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSA 520
Query: 421 DVRISKGDKPKCADANDEL 439
+V + + P D ND++
Sbjct: 521 EVVVPRDQTP---DENDQV 536
Score = 75 (31.5 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++LVP+ IIGK GATI+ + +T++ I V K+ ++ A E + I E
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKE-----NAGAAE--KSITILSTPE 251
Query: 203 AVKKALFAISAIMYKFSP----REDIPLE 227
A +I IM+K + E+IPL+
Sbjct: 252 GTSAACKSILEIMHKEAQDIKFTEEIPLK 280
Score = 74 (31.1 bits), Expect = 7.8e-07, Sum P(3) = 7.8e-07
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L N +GR+IGK G +K I Q + +I + ++
Sbjct: 274 TEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQE 317
Score = 66 (28.3 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
+D K EE + +IL + +G +IGK G+ + I Q+T ++ +
Sbjct: 269 QDIKFTEE-IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITI 312
Score = 63 (27.2 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 19/77 (24%), Positives = 37/77 (48%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCAM 189
D K E+ +IL ++ +IGK G +K++ T T I ++P ++ + P + +
Sbjct: 270 DIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITV 329
Query: 190 EFDNFVLISGESEAVKK 206
+ + E E +KK
Sbjct: 330 KGNVETCAKAEEEIMKK 346
Score = 61 (26.5 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVAL-ISGTPEQKRAAENLIQAFI 621
A G+VIGK G + ++ +S A + + D D+V + I+G + A+ IQ +
Sbjct: 499 AAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKIQEIL 558
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 95 (38.5 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 30/97 (30%), Positives = 44/97 (45%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E E + +P+ IIGK G IK+L SIK+ P D + V+I
Sbjct: 407 ESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGIDAKQ-------RMVII 459
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
SG EA KA I + + F P+E++ LE ++
Sbjct: 460 SGPPEAQFKAQGRIFGKLKEENFFGPKEEVKLEAHIK 496
Score = 94 (38.1 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITVT 358
G + +L + P GRVIGKGG T+ ++ + A++ V D T D D+ V+ +T
Sbjct: 484 GPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKIT 543
Score = 94 (38.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 36/163 (22%), Positives = 69/163 (42%)
Query: 264 VPSILGAARVPDLQGYADTGNTWPVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGRVI 323
+P AA P + G P SL G QS+ + +R+L P +G +I
Sbjct: 154 IPDETAAADAPAVGGRRGFNPRGPPRQGSPSL--GARPKLQSD-VPLRLLVPTQFVGAII 210
Query: 324 GKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLLLQTK-IN 382
GK G TI++I + + ++ID+ K+N +T +P+ S + ++Q + I+
Sbjct: 211 GKEGATIRNITKQTHSKIDIH-RKENAGAAEKPITVHSTPEGCSSACRNIMEIMQKEAID 269
Query: 383 DEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVRIS 425
+ + + +++L +I + T + IS
Sbjct: 270 TKITEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITIS 312
Score = 85 (35.0 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKS-SRGDRVALISGTPEQKRAAENLI 617
A AVG +IGK G ++ + + +GA+I+++ + R+ +ISG PE + A+ I
Sbjct: 417 ALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGIDAKQRMVIISGPPEAQFKAQGRI 473
Score = 82 (33.9 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 16/56 (28%), Positives = 33/56 (58%)
Query: 34 EESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
+ V R+L P +G++IGK G I +I ++T +++ + GA ++ +T++S
Sbjct: 192 QSDVPLRLLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKENAGAAEKPITVHS 247
Score = 78 (32.5 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L N +GR+IGK G +K I Q + +I + +D
Sbjct: 273 TEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQD 316
Score = 75 (31.5 bits), Expect = 9.5e-06, Sum P(3) = 9.5e-06
Identities = 31/142 (21%), Positives = 57/142 (40%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD--DTKDNRDECVITVTAI 360
+Q E + + P +G +IGK G IK + + +GA I + D D + VI I
Sbjct: 404 AQMESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGIDAKQRMVI----I 459
Query: 361 ESPDDIKSMAVEAV---LLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKR 417
P + + A + L + +++ + + V NE++
Sbjct: 460 SGPPEAQFKAQGRIFGKLKEENFFGPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNL 519
Query: 418 TKADVRISKGDKPKCADANDEL 439
T A+V + + P D ND++
Sbjct: 520 TSAEVVVPRDQTP---DENDQV 538
Score = 68 (29.0 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
++LVP+ IIGK GATI+ + +T + I + K+
Sbjct: 198 RLLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKE 234
Score = 67 (28.6 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCAM 189
D K E+ +IL ++ +IGK G +K++ T T I ++P +D + P + +
Sbjct: 269 DTKITEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITV 328
Query: 190 EFDNFVLISGESEAVKK 206
+ E E +KK
Sbjct: 329 KGTLDACAKAEEEIMKK 345
Score = 66 (28.3 bits), Expect = 6.0e-09, Sum P(3) = 6.0e-09
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 29 DEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
D K EE + +IL + +G +IGK G+ + I Q+T ++ +
Sbjct: 269 DTKITEE-IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITI 311
Score = 62 (26.9 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVAL-ISGTPEQKRAAENLIQAFI 621
A G+VIGK G + ++ ++ A + + D D+V + I+G + A+ IQ I
Sbjct: 501 AAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKITGHFYASQLAQRKIQEII 560
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 96 (38.9 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITVT 358
G + +L + P GRVIGKGG T+ ++ + A++ V D T D D+ V+ +T
Sbjct: 493 GPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKIT 552
Query: 359 AIESPDDIKSMAVEAVL 375
+ ++ +L
Sbjct: 553 GHFYASQLAQRKIQEIL 569
Score = 92 (37.4 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 31/100 (31%), Positives = 47/100 (47%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNF 194
++ E E + +P+ IIGK G IK+L SIK+ P A P M
Sbjct: 413 QQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAP--AEGPDAKLRM----- 465
Query: 195 VLISGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
V+I+G EA KA I + + F P+E++ LE ++
Sbjct: 466 VIITGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLEAHIK 505
Score = 90 (36.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 27/121 (22%), Positives = 57/121 (47%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
E+ +R+L P +G +IGK G TI++I + + ++ID+ K+N +T +P+
Sbjct: 204 EVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIH-RKENAGAAEKPITIHSTPEGC 262
Query: 367 KSMAVEAVL-LLQTKINDED-DDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVRI 424
S A + ++ ++Q + D + + +++L +I + T + I
Sbjct: 263 -SAACKIIMEIMQKEAQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITI 321
Query: 425 S 425
S
Sbjct: 322 S 322
Score = 83 (34.3 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 34 EESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
+ V R+L P +G++IGK G I +I ++T++++ + GA ++ +TI+S
Sbjct: 202 QSEVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGAAEKPITIHS 257
Score = 83 (34.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A AVG +IGK G ++ + + +GA+I+++ ++ R+ +I+G PE + A+ I
Sbjct: 426 ALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPEAQFKAQGRI 482
Score = 78 (32.5 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L N +GR+IGK G +K I Q + +I + +D
Sbjct: 283 TEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQD 326
Score = 74 (31.1 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 27/139 (19%), Positives = 55/139 (39%)
Query: 304 QSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP 363
Q E + + P +G +IGK G IK + + +GA I + + + + + I P
Sbjct: 414 QPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEG--PDAKLRMVIITGP 471
Query: 364 DDIKSMA---VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKA 420
+ + A + L + +++ + + V NE++ T A
Sbjct: 472 PEAQFKAQGRIYGKLKEENFFGPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSA 531
Query: 421 DVRISKGDKPKCADANDEL 439
+V + + P D ND++
Sbjct: 532 EVVVPRDQTP---DENDQV 547
Score = 69 (29.3 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCAM 189
D K E+ +IL ++ +IGK G +K++ T T I ++P +D + P + +
Sbjct: 279 DTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITV 338
Query: 190 EFDNFVLISGESEAVKK 206
+ E E +KK
Sbjct: 339 KGSIETCAKAEEEVMKK 355
Score = 69 (29.3 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
K + + ++LVP+ IIGK GATI+ + +T++ I + K+
Sbjct: 200 KPQSEVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKE 244
Score = 68 (29.0 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
+D K EE + +IL + +G +IGK G+ + I Q+T ++ +
Sbjct: 278 QDTKFTEE-IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITI 321
Score = 60 (26.2 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVAL-ISGTPEQKRAAENLIQAFI 621
A G+VIGK G + ++ ++ A + + D D+V + I+G + A+ IQ +
Sbjct: 510 AAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKITGHFYASQLAQRKIQEIL 569
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 141 (54.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 48/184 (26%), Positives = 81/184 (44%)
Query: 31 KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRVVTIY 87
+G E ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV +
Sbjct: 51 RGWEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQ 110
Query: 88 SHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDNDKKRKEKEECQILVP 147
+ A+ K + D+ ++ K ++VP
Sbjct: 111 G----TAEALNAAHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAK----LIVP 162
Query: 148 SSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKA 207
+S + IIGK GAT+K + ++ ++++ K P E V +SGE E V KA
Sbjct: 163 NSTAGLIIGKGGATVKAVMEQSGAWVQLSQK----PEGINLQE--RVVTVSGEPEQVHKA 216
Query: 208 LFAI 211
+ AI
Sbjct: 217 VSAI 220
Score = 93 (37.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 311 RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIKS 368
+++ P + G +IGKGG T+K++ + SGA + + + N E V+TV+ P+ +
Sbjct: 158 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSG--EPEQVHK 215
Query: 369 MAVEAVL 375
AV A++
Sbjct: 216 -AVSAIV 221
Score = 85 (35.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 298 GLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
G G E ++VL P G +IGKGG TI +++ +GA I + +KD
Sbjct: 47 GWGGRGWEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 97
Score = 84 (34.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDS----KSSRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R RV I+G+P +AA+ LI
Sbjct: 440 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVT-ITGSPAATQAAQYLI 497
Score = 84 (34.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 29/108 (26%), Positives = 47/108 (43%)
Query: 250 GLYPNADPILPSRSVPSILGA-ARVPDLQGYADTGNTWPVYSTGLSLVS-----GLVG-- 301
G P A P P LG+ A GY G + G LV+ G G
Sbjct: 359 GAGPGAGAAPPPPPPPGALGSFALAAAANGYLGAGAGGAAGAGGAPLVAAAAAAGAAGGF 418
Query: 302 ------ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
A++S + ++ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 419 LTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 466
Score = 79 (32.9 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQ-KRAAENLIQ 618
+ G +IGK G+ + + + SGA +++S +RV +SG PEQ +A ++Q
Sbjct: 164 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQ 222
>ZFIN|ZDB-GENE-030131-4357 [details] [associations]
symbol:khsrp "KH-type splicing regulatory protein"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-030131-4357 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:AL929150 IPI:IPI00482681
Ensembl:ENSDART00000038330 ArrayExpress:F1QXP8 Bgee:F1QXP8
Uniprot:F1QXP8
Length = 666
Score = 102 (41.0 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 27/89 (30%), Positives = 48/89 (53%)
Query: 2 GDS--GKRYRSQRDNDRDGK--NQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGK 57
GD K+ S RDN Q ++++ + + + YR+ PDG++G +IG+ G+
Sbjct: 70 GDQPESKKMASDRDNAAALSIGAQLAALSKQSVRPSSMTEEYRV--PDGMVGLIIGRGGE 127
Query: 58 VINSIRQETRARVKVVDPFPGAKDRVVTI 86
IN I+Q++ +V++ G DR V+I
Sbjct: 128 QINKIQQDSGCKVQIAPDSGGLPDRSVSI 156
Score = 83 (34.3 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
A+ G VIG+ G N+ I + +GA +E+S GD ++ I G+P+Q A+ LI+
Sbjct: 411 AHKCGLVIGRGGENVKAINQQTGAFVEISRQPPPNGDPNFKLFTIRGSPQQIDHAKQLIE 470
Score = 78 (32.5 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
++VG VIG++G + I+ +G I+ + D++A I G P++ A ++I +
Sbjct: 303 HSVGVVIGRSGEMIKKIQNDAGVRIQFKPDDGTGPDKIAHIMGPPDRCEHAASIINELLQ 362
Query: 623 A 623
+
Sbjct: 363 S 363
Score = 77 (32.2 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTA 359
G E+ + P +K G VIG+GG +K+I Q +GA +++ N D T
Sbjct: 398 GGPPGSEMTFSI--PAHKCGLVIGRGGENVKAINQQTGAFVEISRQPPPNGDPNFKLFTI 455
Query: 360 IESPDDI 366
SP I
Sbjct: 456 RGSPQQI 462
Score = 76 (31.8 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
G+ +E+VI P K G +IGKGG TIK +++ +G ++
Sbjct: 190 GSGHMQEMVI----PAGKAGLIIGKGGETIKQLQERAGVKM 226
Score = 67 (28.6 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASE 182
++++P+ ++ IIGK G TIK+L+ R +K + +DAS+
Sbjct: 196 EMVIPAGKAGLIIGKGGETIKQLQE--RAGVKMILIQDASQ 234
Score = 64 (27.6 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I +++ + +++ P P D V I+G EA++
Sbjct: 113 VPDGMVGLIIGRGGEQINKIQQDSGCKVQIAPDSGGLP--------DRSVSITGGPEAIQ 164
Query: 206 KALFAISAIM 215
KA + I+
Sbjct: 165 KAKMMLDDIV 174
Score = 61 (26.5 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++ VP +IG++G IK++++ I+ P D + P D I G +
Sbjct: 297 EVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKPDDGTGP--------DKIAHIMGPPD 348
Query: 203 AVKKALFAISAIMYKFSPRED 223
+ A I+ ++ RE+
Sbjct: 349 RCEHAASIINELLQSIRVREE 369
Score = 58 (25.5 bits), Expect = 1.7e-10, Sum P(4) = 1.7e-10
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P + +G VIG+ G IK I+ +G +I
Sbjct: 296 IEVPVPRHSVGVVIGRSGEMIKKIQNDAGVRI 327
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 95 (38.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 300 VGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
V + +L + P GRVIGKGG T+ ++ S A++ V D T D D+ V+ +
Sbjct: 480 VSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSAEVVVPRDQTPDENDQVVVKI 539
Query: 358 T 358
T
Sbjct: 540 T 540
Score = 95 (38.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNF 194
++ E E + +P+ IIGK G IK+L SIK+ P +A P M
Sbjct: 401 EQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA--PDAKVRM----- 453
Query: 195 VLISGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
V+I+G EA KA I + + SP+E++ LE +R
Sbjct: 454 VIITGPPEAQFKAQGRIYGKIKEENFVSPKEEVKLEAHIR 493
Score = 81 (33.6 bits), Expect = 7.7e-07, Sum P(3) = 7.7e-07
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A +VG +IGK G ++ + + +GA+I+++ +++ R+ +I+G PE + A+ I
Sbjct: 414 ALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKAQGRI 470
Score = 80 (33.2 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
R+L P +G++IGK G I +I ++T++++ V GA ++ +TI S
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTGAAEKSITILS 248
Score = 78 (32.5 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 26/139 (18%), Positives = 58/139 (41%)
Query: 304 QSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP 363
QSE + + P +G +IGK G IK + + +GA I + + + + + I P
Sbjct: 402 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAE--APDAKVRMVIITGP 459
Query: 364 DDIKSMA---VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKA 420
+ + A + + + ++ +++ + + V NE++ + A
Sbjct: 460 PEAQFKAQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSA 519
Query: 421 DVRISKGDKPKCADANDEL 439
+V + + P D ND++
Sbjct: 520 EVVVPRDQTP---DENDQV 535
Score = 76 (31.8 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 26/85 (30%), Positives = 38/85 (44%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++LVP+ IIGK GATI+ + +T++ I V K E T + G S
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRK---ENTGAAEKSITILSTPEGTSA 255
Query: 203 AVKKALFAISAIMYKFSPREDIPLE 227
A K L + E+IPL+
Sbjct: 256 ACKSILEIMHKEAQDIKFTEEIPLK 280
Score = 74 (31.1 bits), Expect = 7.7e-07, Sum P(3) = 7.7e-07
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L N +GR+IGK G +K I Q + +I + ++
Sbjct: 274 TEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQE 317
Score = 66 (28.3 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
+D K EE + +IL + +G +IGK G+ + I Q+T ++ +
Sbjct: 269 QDIKFTEE-IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITI 312
Score = 62 (26.9 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP 177
D K E+ +IL ++ +IGK G +K++ T T I ++P
Sbjct: 270 DIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISP 314
Score = 61 (26.5 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVAL-ISGTPEQKRAAENLIQAFI 621
A G+VIGK G + ++ +S A + + D D+V + I+G + A+ IQ +
Sbjct: 498 AAGRVIGKGGKTVNELQSLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKIQEIL 557
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 95 (38.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 300 VGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
V + +L + P GRVIGKGG T+ ++ S A++ V D T D D+ V+ +
Sbjct: 480 VSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDENDQVVVKI 539
Query: 358 T 358
T
Sbjct: 540 T 540
Score = 95 (38.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNF 194
++ E E + +P+ IIGK G IK+L SIK+ P +A P M
Sbjct: 401 EQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA--PDAKVRM----- 453
Query: 195 VLISGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
V+I+G EA KA I + + SP+E++ LE +R
Sbjct: 454 VIITGPPEAQFKAQGRIYGKIKEENFVSPKEEVKLEAHIR 493
Score = 81 (33.6 bits), Expect = 7.7e-07, Sum P(3) = 7.7e-07
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A +VG +IGK G ++ + + +GA+I+++ +++ R+ +I+G PE + A+ I
Sbjct: 414 ALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKAQGRI 470
Score = 80 (33.2 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
R+L P +G++IGK G I +I ++T++++ V GA ++ +TI S
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILS 248
Score = 78 (32.5 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 26/139 (18%), Positives = 58/139 (41%)
Query: 304 QSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP 363
QSE + + P +G +IGK G IK + + +GA I + + + + + I P
Sbjct: 402 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAE--APDAKVRMVIITGP 459
Query: 364 DDIKSMA---VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKA 420
+ + A + + + ++ +++ + + V NE++ + A
Sbjct: 460 PEAQFKAQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSA 519
Query: 421 DVRISKGDKPKCADANDEL 439
+V + + P D ND++
Sbjct: 520 EVVVPRDQTP---DENDQV 535
Score = 75 (31.5 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++LVP+ IIGK GATI+ + +T++ I V K+ ++ A E + I E
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKE-----NAGAAE--KSITILSTPE 251
Query: 203 AVKKALFAISAIMYKFSP----REDIPLE 227
A +I IM+K + E+IPL+
Sbjct: 252 GTSAACKSILEIMHKEAQDIKFTEEIPLK 280
Score = 74 (31.1 bits), Expect = 7.7e-07, Sum P(3) = 7.7e-07
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L N +GR+IGK G +K I Q + +I + ++
Sbjct: 274 TEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQE 317
Score = 66 (28.3 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
+D K EE + +IL + +G +IGK G+ + I Q+T ++ +
Sbjct: 269 QDIKFTEE-IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITI 312
Score = 63 (27.2 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 19/77 (24%), Positives = 37/77 (48%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCAM 189
D K E+ +IL ++ +IGK G +K++ T T I ++P ++ + P + +
Sbjct: 270 DIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITV 329
Query: 190 EFDNFVLISGESEAVKK 206
+ + E E +KK
Sbjct: 330 KGNVETCAKAEEEIMKK 346
Score = 61 (26.5 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVAL-ISGTPEQKRAAENLIQAFI 621
A G+VIGK G + ++ +S A + + D D+V + I+G + A+ IQ +
Sbjct: 498 AAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKIQEIL 557
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 95 (38.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 300 VGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
V + +L + P GRVIGKGG T+ ++ S A++ V D T D D+ V+ +
Sbjct: 480 VSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDENDQVVVKI 539
Query: 358 T 358
T
Sbjct: 540 T 540
Score = 95 (38.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNF 194
++ E E + +P+ IIGK G IK+L SIK+ P +A P M
Sbjct: 401 EQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA--PDAKVRM----- 453
Query: 195 VLISGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
V+I+G EA KA I + + SP+E++ LE +R
Sbjct: 454 VIITGPPEAQFKAQGRIYGKIKEENFVSPKEEVKLEAHIR 493
Score = 81 (33.6 bits), Expect = 7.7e-07, Sum P(3) = 7.7e-07
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A +VG +IGK G ++ + + +GA+I+++ +++ R+ +I+G PE + A+ I
Sbjct: 414 ALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKAQGRI 470
Score = 80 (33.2 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
R+L P +G++IGK G I +I ++T++++ V GA ++ +TI S
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILS 248
Score = 78 (32.5 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 26/139 (18%), Positives = 58/139 (41%)
Query: 304 QSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP 363
QSE + + P +G +IGK G IK + + +GA I + + + + + I P
Sbjct: 402 QSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAE--APDAKVRMVIITGP 459
Query: 364 DDIKSMA---VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKA 420
+ + A + + + ++ +++ + + V NE++ + A
Sbjct: 460 PEAQFKAQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSA 519
Query: 421 DVRISKGDKPKCADANDEL 439
+V + + P D ND++
Sbjct: 520 EVVVPRDQTP---DENDQV 535
Score = 75 (31.5 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++LVP+ IIGK GATI+ + +T++ I V K+ ++ A E + I E
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKE-----NAGAAE--KSITILSTPE 251
Query: 203 AVKKALFAISAIMYKFSP----REDIPLE 227
A +I IM+K + E+IPL+
Sbjct: 252 GTSAACKSILEIMHKEAQDIKFTEEIPLK 280
Score = 74 (31.1 bits), Expect = 7.7e-07, Sum P(3) = 7.7e-07
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L N +GR+IGK G +K I Q + +I + ++
Sbjct: 274 TEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQE 317
Score = 66 (28.3 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
+D K EE + +IL + +G +IGK G+ + I Q+T ++ +
Sbjct: 269 QDIKFTEE-IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITI 312
Score = 63 (27.2 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 19/77 (24%), Positives = 37/77 (48%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCAM 189
D K E+ +IL ++ +IGK G +K++ T T I ++P ++ + P + +
Sbjct: 270 DIKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITV 329
Query: 190 EFDNFVLISGESEAVKK 206
+ + E E +KK
Sbjct: 330 KGNVETCAKAEEEIMKK 346
Score = 61 (26.5 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVAL-ISGTPEQKRAAENLIQAFI 621
A G+VIGK G + ++ +S A + + D D+V + I+G + A+ IQ +
Sbjct: 498 AAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKIQEIL 557
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 95 (38.5 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRV 83
++ G E ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV
Sbjct: 47 KRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 106
Query: 84 VTI 86
I
Sbjct: 107 CLI 109
Score = 91 (37.1 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 24/85 (28%), Positives = 48/85 (56%)
Query: 311 RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIKS 368
+++ P + G +IGKGG T+K++ + SGA + + + N E V+TV+ P+ +
Sbjct: 158 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSG--EPEQNRK 215
Query: 369 MAVEAVLLLQTKINDEDDDTVTIRL 393
AVE +++Q KI ++ + + +
Sbjct: 216 -AVE--IIVQ-KIQEDPQSSSCLNI 236
Score = 90 (36.7 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 34/144 (23%), Positives = 66/144 (45%)
Query: 140 EECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISG 199
++ +++VP+S + IIGK GAT+K + ++ ++++ K P E V +SG
Sbjct: 155 KQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK----PEGINLQE--RVVTVSG 208
Query: 200 ESEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPIL 259
E E +KA + I+ K +ED P ++ G + N+ +L
Sbjct: 209 EPEQNRKA---VEIIVQKI--QED-PQSSSCLNISYSNITGPVANSNPTGSPFANSTEVL 262
Query: 260 PSRSVPS----ILGAARVPDLQGY 279
P+ + + +LG A + + G+
Sbjct: 263 PNAAAAATASTLLGQAGLAGMGGF 286
Score = 87 (35.7 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQKRAAENLI 617
+ G +IGK G+ + + + SGA +++S +RV +SG PEQ R A +I
Sbjct: 164 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQNRKAVEII 220
Score = 87 (35.7 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 249 GGLYPNADPILPSRSVPSILGAARVPDLQGYADTGNTWPVYSTGLSLVSGLVGASQSEEL 308
GG +P A P L S+ S+ A + GY + + P+ ++ L L A +E
Sbjct: 359 GGGHPAA-PSLGGFSLGSLAAATGASN--GYLNPSS--PLVASSLLGTEKL--AEGGKE- 410
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 411 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 445
Score = 84 (34.6 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD---NRDE--CVITVTAIE 361
E ++VL P G +IGKGG TI +++ +GA I + +KD E C+I T +E
Sbjct: 56 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-VE 114
Query: 362 SPDDIKSMAVEAV 374
+ + + + E V
Sbjct: 115 ALNGVHNFIAEKV 127
Score = 81 (33.6 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+G+P +AA+ LI
Sbjct: 419 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLI 476
Score = 75 (31.5 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KD 179
++L+PS + +IIGK G TI +L+ +T +IK++ KD
Sbjct: 60 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 97
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 106 (42.4 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 31/91 (34%), Positives = 47/91 (51%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 151
Query: 361 ESPDDIKSMAVEAVLLLQTKINDEDDDTVTI 391
P I +E V + + D VTI
Sbjct: 152 --PQSI----IECVKQICVVMLDPPSKGVTI 176
Score = 105 (42.0 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 37/138 (26%), Positives = 64/138 (46%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G++ + L IR+L ++G +IGK G ++K +R+ SGA I++ + N E +IT
Sbjct: 3 TGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAV------EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXX 410
+ + K+ A+ E + T VT+RL+V
Sbjct: 61 LAGPTNAI-FKAFAMIIDKLEEVISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 411 XNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 120 IKEIRESTGAQVQVA-GD 136
Score = 91 (37.1 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 148
Score = 84 (34.6 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 290 STGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDN 349
+TG S + S EL I P + IG +IG+ G I IRQ SGAQI + + +
Sbjct: 224 NTGFSGSLDASAQTTSHELTI----PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 279
Query: 350 RDECVITVT 358
+ +T+T
Sbjct: 280 STDRQVTIT 288
Score = 78 (32.5 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++++ DR I+G+ A+ LI
Sbjct: 249 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 301
Score = 74 (31.1 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+++VP+SQ ++IGK G IK +R T ++V
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 72 (30.4 bits), Expect = 2.6e-10, Sum P(3) = 2.6e-10
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ A + + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISEG--NCPERIITL 61
Score = 58 (25.5 bits), Expect = 6.7e-09, Sum P(3) = 6.7e-09
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASE 182
++L+ + +IIGK G ++K++R ++ I ++ + E
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGAGINISEGNCPE 56
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 100 (40.3 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 320 GRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLLLQT 379
G +IGKGG IK +R SGA I +D+ + ++ VIT+T + D I++ A LLQ
Sbjct: 376 GSIIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITITGTQ--DQIQN----APYLLQN 429
Query: 380 KI 381
+
Sbjct: 430 SV 431
Score = 94 (38.1 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + +R SGA+I++ + DRV I+GT +Q + A L+Q
Sbjct: 376 GSIIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITITGTQDQIQNAPYLLQ 428
Score = 91 (37.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 31/123 (25%), Positives = 59/123 (47%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA-IES 362
++E+V +R+L G VIGKGG IK++ A + V D+ E +++++A IE+
Sbjct: 39 TDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVPDSSG--PERILSISADIET 96
Query: 363 PDDIKSMAVEAVLLLQT-KINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKAD 421
+I + + Q K +D D + +RLL+ E+R+ T+
Sbjct: 97 IGEILKKIIPTLEEYQHYKGSDFDCE---LRLLIHQSLAGGIIGVKGAKIKELRENTQTT 153
Query: 422 VRI 424
+++
Sbjct: 154 IKL 156
Score = 89 (36.4 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK LR T+T+IK+ + PT D VLI G+
Sbjct: 122 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHPT-------DRVVLIGGK 174
Query: 201 SEAVKKAL 208
+ V + +
Sbjct: 175 PDRVVECI 182
Score = 74 (31.1 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
K + +E V RIL G+VIGK GK I ++ + A V V D +R+++I
Sbjct: 34 KRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVPDS--SGPERILSI 90
Score = 73 (30.8 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 31 KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRVVTI 86
KG++ R+L + G +IG G I +R+ T+ +K+ P DRVV I
Sbjct: 115 KGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHPTDRVVLI 171
Score = 69 (29.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
E E +IL+ S + +IGK G IK L + S+ V P D+S P ++ D
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSV-P-DSSGPERILSISAD 93
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 99 (39.9 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 26/90 (28%), Positives = 45/90 (50%)
Query: 3 DSGKRYRSQRDND--RDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVIN 60
+ K + Q D + R +NQ+ G + RIL ++G++IG+ G I
Sbjct: 57 EGSKLHAEQLDKNQRRSQRNQRNPYPGMPGPGRQADFPLRILVQSEMVGAIIGRQGSTIR 116
Query: 61 SIRQETRARVKVV-DPFPGAKDRVVTIYSH 89
+I Q++RARV V G+ ++ +TIY +
Sbjct: 117 TITQQSRARVDVHRKENVGSLEKSITIYGN 146
Score = 95 (38.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 21/81 (25%), Positives = 43/81 (53%)
Query: 298 GLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITV 357
G+ G + + +R+L +G +IG+ G TI++I Q S A++DV K+N ++
Sbjct: 83 GMPGPGRQADFPLRILVQSEMVGAIIGRQGSTIRTITQQSRARVDVH-RKENVGSLEKSI 141
Query: 358 TAIESPDDIKSMAVEAVLLLQ 378
T +P++ + + ++Q
Sbjct: 142 TIYGNPENCTNACKRILEVMQ 162
Score = 91 (37.1 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 304 QSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRD---ECVITVTAI 360
+ E+ +++L N IGR+IGK G TIK I Q + +I V D E +ITV +
Sbjct: 176 ECSEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDINSFNLERIITVKGL 235
Score = 77 (32.2 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMS--DSKS---SRGDRVALISGTPEQKRAAENLI 617
NAVG +IG GS++ +I + S A+++++ D+ + +R I GTPE + A+ +I
Sbjct: 327 NAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTIVGTPEGQWKAQYMI 386
Score = 77 (32.2 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++LV SSQ IIGK G ++ L+ T + IK+ P+ A P E V I G
Sbjct: 407 ELLVASSQVGRIIGKGGQNVRELQRVTGSVIKL-PEHALAPPSGGDEETP--VHIIGLFY 463
Query: 203 AVKKALFAISAIMYKFSP 220
+V+ A I A+M +P
Sbjct: 464 SVQSAQRRIRAMMLSTNP 481
Score = 75 (31.5 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 12/48 (25%), Positives = 29/48 (60%)
Query: 298 GLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDD 345
G + + L + +L +++GR+IGKGG ++ +++ +G+ I + +
Sbjct: 394 GFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPE 441
Score = 74 (31.1 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 17/68 (25%), Positives = 40/68 (58%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSD---SKSSRGDRVALIS--GTPEQKRAAENL 616
++ VG++IGK G N+ +++++G+ I++ + + S GD + G ++A+
Sbjct: 412 SSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGLFYSVQSAQRR 471
Query: 617 IQAFIMAT 624
I+A +++T
Sbjct: 472 IRAMMLST 479
Score = 74 (31.1 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 139 KEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLIS 198
+E + +P++ IIG G+ I+ + + S+K+ P DA +P + + V I
Sbjct: 317 QETTYLYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQ---QTERKVTIV 373
Query: 199 GESEAVKKALFAI 211
G E KA + I
Sbjct: 374 GTPEGQWKAQYMI 386
Score = 74 (31.1 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 21 QKRRIN-EKDEKGNEESVI-YRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
Q+ I+ K E E S I +IL + +IG +IGKSG I I Q+T ++ V
Sbjct: 162 QQEAISTNKGELSPECSEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITV 215
Score = 72 (30.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMS---DSKSSRGDRVALISGTPEQKRAAENLI 617
N +G++IGK+G+ + I + + I +S D S +R+ + G E AEN I
Sbjct: 189 NLIGRIIGKSGNTIKRIMQDTDTKITVSSINDINSFNLERIITVKGLIENMSRAENQI 246
Score = 68 (29.0 bits), Expect = 9.1e-07, Sum P(3) = 9.1e-07
Identities = 28/121 (23%), Positives = 53/121 (43%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQI-----DVDDTKDNRDECVITVTAIESPDDIKSM 369
P N +G +IG G I+SI + S A + D D D + E +T+ + +P+
Sbjct: 325 PNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTI--VGTPEG---- 378
Query: 370 AVEAVLLLQTKINDE------DDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVR 423
+A ++ K+ +E DD +T+ LLV E+++ T + ++
Sbjct: 379 QWKAQYMIFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIK 438
Query: 424 I 424
+
Sbjct: 439 L 439
Score = 66 (28.3 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 140 EEC-QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT 176
E C +IL ++ IIGK+G TIKR+ T T I V+
Sbjct: 179 EICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVS 216
Score = 60 (26.2 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
+ILV S IIG+ G+TI+ + ++R + V K+
Sbjct: 96 RILVQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKE 132
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 136 (52.9 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 47/181 (25%), Positives = 79/181 (43%)
Query: 34 EESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRVVTIYSHX 90
E ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV +
Sbjct: 2 EGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG-- 59
Query: 91 XXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDNDKKRKEKEECQILVPSSQ 150
+ A+ K + D+ ++ K ++VP+S
Sbjct: 60 --TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAK----LIVPNST 113
Query: 151 SANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFA 210
+ IIGK GAT+K + ++ ++++ K P E V +SGE E V KA+ A
Sbjct: 114 AGLIIGKGGATVKAVMEQSGAWVQLSQK----PEGINLQE--RVVTVSGEPEQVHKAVSA 167
Query: 211 I 211
I
Sbjct: 168 I 168
Score = 93 (37.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 311 RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIKS 368
+++ P + G +IGKGG T+K++ + SGA + + + N E V+TV+ P+ +
Sbjct: 106 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSG--EPEQVHK 163
Query: 369 MAVEAVL 375
AV A++
Sbjct: 164 -AVSAIV 169
Score = 86 (35.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD---NRDE--CVITVTAIE 361
E ++VL P G +IGKGG TI +++ +GA I + +KD E C++ TA E
Sbjct: 4 EYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTA-E 62
Query: 362 SPDDIKSMAVEAV 374
+ + + S E V
Sbjct: 63 ALNAVHSFIAEKV 75
Score = 84 (34.6 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDS----KSSRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R RV I+G+P +AA+ LI
Sbjct: 388 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVT-ITGSPAATQAAQYLI 445
Score = 81 (33.6 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 290 STGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
+ G L + + A ++ELV + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 362 AAGGFLTAEKLAAESAKELV-EIAVPENLVGAILGKGGKTLVEYQELTGARIQI 414
Score = 79 (32.9 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQ-KRAAENLIQ 618
+ G +IGK G+ + + + SGA +++S +RV +SG PEQ +A ++Q
Sbjct: 112 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQ 170
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 106 (42.4 bits), Expect = 4.9e-10, Sum P(3) = 4.9e-10
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
+ +V P + G +IGKGG IK IR SGA I +D+ + ++ +IT+T + D I+
Sbjct: 364 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ--DQIQ 421
Query: 368 SMAVEAVLLLQTKI 381
+ A LLQ +
Sbjct: 422 N----AQYLLQNSV 431
Score = 98 (39.6 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 376 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 428
Score = 85 (35.0 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVLISGES 201
Q+ +P + +IIGK G IK++R ++ SIK+ P + SE D + I+G
Sbjct: 367 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE---------DRIITITGTQ 417
Query: 202 EAVKKALFAISAIMYKFS 219
+ ++ A + + + ++S
Sbjct: 418 DQIQNAQYLLQNSVKQYS 435
Score = 84 (34.6 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 29/94 (30%), Positives = 51/94 (54%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA-IES 362
++E+V +R+L G VIGKGG IK++R A + V D+ E +++++A IE+
Sbjct: 39 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISADIET 96
Query: 363 PDDIKSMAVEAVLLLQT-KINDEDDDTVTIRLLV 395
+I + + Q K +D D + +RLL+
Sbjct: 97 IGEILKKIIPTLEEYQHYKGSDFDCE---LRLLI 127
Score = 79 (32.9 bits), Expect = 4.9e-10, Sum P(3) = 4.9e-10
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
K + +E V RIL G+VIGK GK I ++R + A V V D +R+++I
Sbjct: 34 KRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSI 90
Score = 75 (31.5 bits), Expect = 4.9e-10, Sum P(3) = 4.9e-10
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK+ T+T+IK+ + C D VLI G+
Sbjct: 122 ELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQE-------CCPHSTDRVVLIGGK 174
Query: 201 SEAVKKAL 208
+ V + +
Sbjct: 175 PDRVVECI 182
Score = 74 (31.1 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
E E +IL+ S + +IGK G IK LR+ S+ V P D+S P ++ D
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD 93
Score = 62 (26.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 31 KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRVVTI 86
KG++ R+L + G +IG G I T+ +K+ P + DRVV I
Sbjct: 115 KGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQECCPHSTDRVVLI 171
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 122 (48.0 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 38/155 (24%), Positives = 71/155 (45%)
Query: 20 NQKRRINEKDEKGNEESVI-YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPG 78
+Q + +K N +++I YR+L G +IG +G+VI+SIR ET + + PG
Sbjct: 52 DQSSTLPSLQDKSNIDALINYRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPG 111
Query: 79 AKDRVVTIYSHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDNDKKRKE 138
+ +R++T+ A +A ++ + T N + E
Sbjct: 112 SHERILTVSGKLDDCAKALSYFAQ-------ALINANIESYNYFPLKQLSSTPNTE---E 161
Query: 139 KEECQILVPSSQSANIIGKAGATIKRLRSKTRTSI 173
++L+P+SQ +IG GA I++L++ S+
Sbjct: 162 TTILRLLIPNSQMGTLIGSKGARIQQLQNNFNISM 196
Score = 95 (38.5 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
VG +IGK GS + +RK+SGA I +S++ +RV I+G+ A+ +I
Sbjct: 298 VGALIGKRGSRIDGVRKVSGAMIAISEAIEGENERVFTITGSSHAVDKAKQMI 350
Score = 84 (34.6 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT-AIESPDDIKSM 369
P + +G +IGK G I +R+ SGA I + + + +E V T+T + + D K M
Sbjct: 294 PNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGENERVFTITGSSHAVDKAKQM 349
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 136 (52.9 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 47/181 (25%), Positives = 79/181 (43%)
Query: 34 EESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRVVTIYSHX 90
E ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV +
Sbjct: 40 EGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG-- 97
Query: 91 XXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDNDKKRKEKEECQILVPSSQ 150
+ A+ K + D+ ++ K ++VP+S
Sbjct: 98 --TAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAK----LIVPNST 151
Query: 151 SANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFA 210
+ IIGK GAT+K + ++ ++++ K P E V +SGE E V KA+ A
Sbjct: 152 AGLIIGKGGATVKAVMEQSGAWVQLSQK----PEGINLQE--RVVTVSGEPEQVHKAVSA 205
Query: 211 I 211
I
Sbjct: 206 I 206
Score = 93 (37.8 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 311 RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIKS 368
+++ P + G +IGKGG T+K++ + SGA + + + N E V+TV+ P+ +
Sbjct: 144 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSG--EPEQVHK 201
Query: 369 MAVEAVL 375
AV A++
Sbjct: 202 -AVSAIV 207
Score = 87 (35.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD---NRDE--CVITV 357
++ E ++VL P G +IGKGG TI +++ +GA I + +KD E C++
Sbjct: 38 AEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQG 97
Query: 358 TAIESPDDIKSMAVEAV 374
TA E+ + + S E V
Sbjct: 98 TA-EALNAVHSFIAEKV 113
Score = 84 (34.6 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDS----KSSRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R RV I+G+P +AA+ LI
Sbjct: 426 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVT-ITGSPAATQAAQYLI 483
Score = 81 (33.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 290 STGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
+ G L + + A ++ELV + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 400 AAGGFLTAEKLAAESAKELV-EIAVPENLVGAILGKGGKTLVEYQELTGARIQI 452
Score = 79 (32.9 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQ-KRAAENLIQ 618
+ G +IGK G+ + + + SGA +++S +RV +SG PEQ +A ++Q
Sbjct: 150 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQ 208
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 120 (47.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 38/137 (27%), Positives = 59/137 (43%)
Query: 298 GLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITV 357
G A Q + +R+L G +IGKGG IK +R A + V D+ N E V TV
Sbjct: 40 GFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTV 97
Query: 358 TAIESPDDIKSMAVEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKR 417
TA D+ + + +L + + N + D +R+LV E+R++
Sbjct: 98 TA----DEKTVLNILKDVLPRLEDNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREK 153
Query: 418 TKADVRISKGDKPKCAD 434
A ++I G P D
Sbjct: 154 CSARLKIFTGCAPGSTD 170
Score = 94 (38.1 bits), Expect = 8.6e-10, Sum P(3) = 8.6e-10
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IG+ G +A IR+ SGA I + S + + +R+ I GT +Q +A+ L+Q
Sbjct: 329 GTIIGRGGERIARIRQESGAQITLEQS-NGQPERIITIKGTEQQIHSAQYLLQ 380
Score = 91 (37.1 bits), Expect = 8.6e-10, Sum P(3) = 8.6e-10
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 3 DSGKRYRSQRDND---RDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVI 59
DS K + + DND R G++++ + + E + R+L G++IGK G+ I
Sbjct: 13 DSPKAMKREHDNDDGDRTGRHKRPKTDGFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENI 72
Query: 60 NSIRQETRARVKVVDPFPGAKDRVVTI 86
+R E A V+V D +RV T+
Sbjct: 73 KRLRAEFNAHVQVPDS--NTPERVCTV 97
Score = 87 (35.7 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 139 KEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLIS 198
K E ++LV S + IIGK G IKRLR++ ++V P D++ P C + D +++
Sbjct: 49 KFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV-P-DSNTPERVCTVTADEKTVLN 106
Score = 85 (35.0 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 311 RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIE 361
+V P + G +IG+GG I IRQ SGAQI ++ + + + E +IT+ E
Sbjct: 320 QVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQS-NGQPERIITIKGTE 369
Score = 72 (30.4 bits), Expect = 8.6e-10, Sum P(3) = 8.6e-10
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 138 EKEECQI--LVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFV 195
E++ C++ LV S + +IG+ G+ IK LR K +K+ A T D +
Sbjct: 121 ERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGST-------DRVL 173
Query: 196 LISGESEAVKKALFAISAIMYKFSPREDIPLE 227
+ SGE K L I +M + ++IP++
Sbjct: 174 ITSGEQ---KNVLGIIEEVMKEL---KEIPIK 199
Score = 72 (30.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRVV 84
R+L G++IG++G I +R++ AR+K+ PG+ DRV+
Sbjct: 128 RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVL 173
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 120 (47.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 38/137 (27%), Positives = 59/137 (43%)
Query: 298 GLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITV 357
G A Q + +R+L G +IGKGG IK +R A + V D+ N E V TV
Sbjct: 40 GFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTV 97
Query: 358 TAIESPDDIKSMAVEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKR 417
TA D+ + + +L + + N + D +R+LV E+R++
Sbjct: 98 TA----DEKTVLNILKDVLPRLEDNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREK 153
Query: 418 TKADVRISKGDKPKCAD 434
A ++I G P D
Sbjct: 154 CSARLKIFTGCAPGSTD 170
Score = 94 (38.1 bits), Expect = 8.6e-10, Sum P(3) = 8.6e-10
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IG+ G +A IR+ SGA I + S + + +R+ I GT +Q +A+ L+Q
Sbjct: 329 GTIIGRGGERIARIRQESGAQITLEQS-NGQPERIITIKGTEQQIHSAQYLLQ 380
Score = 91 (37.1 bits), Expect = 8.6e-10, Sum P(3) = 8.6e-10
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 3 DSGKRYRSQRDND---RDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVI 59
DS K + + DND R G++++ + + E + R+L G++IGK G+ I
Sbjct: 13 DSPKAMKREHDNDDGDRTGRHKRPKTDGFTEAIQQGKFEVRLLVSSKSAGAIIGKGGENI 72
Query: 60 NSIRQETRARVKVVDPFPGAKDRVVTI 86
+R E A V+V D +RV T+
Sbjct: 73 KRLRAEFNAHVQVPDS--NTPERVCTV 97
Score = 87 (35.7 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 139 KEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLIS 198
K E ++LV S + IIGK G IKRLR++ ++V P D++ P C + D +++
Sbjct: 49 KFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV-P-DSNTPERVCTVTADEKTVLN 106
Score = 85 (35.0 bits), Expect = 7.5e-09, Sum P(3) = 7.5e-09
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 311 RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIE 361
+V P + G +IG+GG I IRQ SGAQI ++ + + + E +IT+ E
Sbjct: 320 QVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQS-NGQPERIITIKGTE 369
Score = 72 (30.4 bits), Expect = 8.6e-10, Sum P(3) = 8.6e-10
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 138 EKEECQI--LVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFV 195
E++ C++ LV S + +IG+ G+ IK LR K +K+ A T D +
Sbjct: 121 ERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGST-------DRVL 173
Query: 196 LISGESEAVKKALFAISAIMYKFSPREDIPLE 227
+ SGE K L I +M + ++IP++
Sbjct: 174 ITSGEQ---KNVLGIIEEVMKEL---KEIPIK 199
Score = 72 (30.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRVV 84
R+L G++IG++G I +R++ AR+K+ PG+ DRV+
Sbjct: 128 RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVL 173
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 91 (37.1 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 139 KEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLIS 198
+ +++VP+S IIGK GATIK +++ IK++P D + S D V +S
Sbjct: 120 RRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLS-----DRLVTLS 174
Query: 199 GESEAVKKALFAISA 213
G E +A+ I A
Sbjct: 175 GTFEEQMRAIDLILA 189
Score = 89 (36.4 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 30 EKGNEESVIYRI--LCPDGVIGSVIGKSGKVINSIRQETRARVKV--VD-PFPGAKDRVV 84
E GNE RI + P+ G +IGK G I S +E++A +K+ +D F G DR+V
Sbjct: 112 EDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLV 171
Query: 85 TI 86
T+
Sbjct: 172 TL 173
Score = 82 (33.9 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 34 EESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRVVTI 86
E+ R L + GSVIGK G I + ++ AR+++ + FPG DR++ I
Sbjct: 32 EKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMI 87
Score = 78 (32.5 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDS---KSSRGDRVALISGTPEQKRAAENLIQ 618
+G V+G+ G N+ I +++GA I++SD S DR I+G + AE +I+
Sbjct: 266 IGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQAETMIK 322
Score = 76 (31.8 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV---DDTKDNRDECVITVTAIESPDDI 366
IR++ P + G +IGKGG TIKS + S A I + D+T + ++T++
Sbjct: 123 IRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEEQ-- 180
Query: 367 KSMAVEAVLLLQTKINDED 385
+ A+ L+ K+ ++D
Sbjct: 181 ----MRAIDLILAKLTEDD 195
Score = 69 (29.3 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 319 IGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
IG V+G+GG I I Q +GA+I + D D
Sbjct: 266 IGLVLGRGGRNIMEITQMTGARIKISDRGD 295
Score = 64 (27.6 bits), Expect = 5.1e-06, Sum P(3) = 5.1e-06
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+ LV ++ + ++IGK G+TI ++K+ I+++ P + D ++ISG +
Sbjct: 38 RFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTT-----DRIIMISGSIK 92
Query: 203 AVKKAL 208
V L
Sbjct: 93 EVVNGL 98
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 94 (38.1 bits), Expect = 2.1e-09, Sum P(4) = 2.1e-09
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 32 GNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
G SV PDG++G +IG+ G+ I+ ++QE+ ++++ G DR VT+
Sbjct: 85 GPPRSVSEEFKVPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTL 139
Score = 92 (37.4 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDI 366
P K G +IGKGG TIK+I Q SGA+I++ + N D + T SP I
Sbjct: 382 PTMKTGLIIGKGGETIKNISQQSGARIELQRNPPPNSDPNIKIFTVRGSPQQI 434
Score = 84 (34.6 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
AVG VIG++G + I+ +G I+ S +R+A I G P++ + A ++I
Sbjct: 278 AVGIVIGRSGEMIKKIQNDTGVRIQFKPDDGSTPERIAQIMGPPDRAQHAADII 331
Score = 80 (33.2 bits), Expect = 2.1e-09, Sum P(4) = 2.1e-09
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G +IGK G + NI + SGA IE+ + D ++ + G+P+Q A L++
Sbjct: 387 GLIIGKGGETIKNISQQSGARIELQRNPPPNSDPNIKIFTVRGSPQQIDYARQLVE 442
Score = 75 (31.5 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P +K G VIGKGG TIK +++ +G + + + D N
Sbjct: 176 VHEMMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN 217
Score = 72 (30.4 bits), Expect = 7.0e-06, Sum P(3) = 7.0e-06
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 136 RKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFV 195
R EE + VP IIG+ G I RL+ ++ I++ P P D V
Sbjct: 88 RSVSEEFK--VPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMP--------DRSV 137
Query: 196 LISGESEAVKKALFAISAIMYKFSP 220
++G +A+ A +S I+ K P
Sbjct: 138 TLTGSPDAIMTAKRLLSEIVEKGRP 162
Score = 70 (29.7 bits), Expect = 2.1e-09, Sum P(4) = 2.1e-09
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
++++P+S++ +IGK G TIK+L+ R +K V +D + T + D + ISG+
Sbjct: 178 EMMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGA-----DKPLRISGDP 230
Query: 202 EAVKKA 207
V++A
Sbjct: 231 FKVQQA 236
Score = 67 (28.6 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 140 EECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
E + VP +IG++G IK++++ T I+ P D S P
Sbjct: 268 ESLDVPVPRFAVGIVIGRSGEMIKKIQNDTGVRIQFKPDDGSTP 311
Score = 55 (24.4 bits), Expect = 2.1e-09, Sum P(4) = 2.1e-09
Identities = 20/74 (27%), Positives = 30/74 (40%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAI 360
G E L + V P +G VIG+ G IK I+ +G +I + E + I
Sbjct: 263 GGGGGESLDVPV--PRFAVGIVIGRSGEMIKKIQNDTGVRIQFKPDDGSTPE---RIAQI 317
Query: 361 ESPDDIKSMAVEAV 374
P D A + +
Sbjct: 318 MGPPDRAQHAADII 331
>UNIPROTKB|F6Y140 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
OMA:QASGNCH GeneTree:ENSGT00650000093048 EMBL:AAEX03012495
Ensembl:ENSCAFT00000029641 Uniprot:F6Y140
Length = 602
Score = 90 (36.7 bits), Expect = 2.2e-09, Sum P(4) = 2.2e-09
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
YR+ PDG++G +IG+ G+ IN I+Q++ +V++ G +R V++
Sbjct: 5 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSL 50
Score = 82 (33.9 bits), Expect = 2.2e-09, Sum P(4) = 2.2e-09
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G VIG+ G N+ I + +GA +E+S GD ++ +I G+P+Q A+ LI+
Sbjct: 293 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIE 348
Score = 77 (32.2 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P K G VIGKGG TIK +++ +G + I + D N
Sbjct: 91 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN 132
Score = 73 (30.8 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
++VG VIG++G + I+ +G I+ + +++A I G P++ A +I +
Sbjct: 188 HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQ 247
Query: 623 A 623
+
Sbjct: 248 S 248
Score = 73 (30.8 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
P +K G VIG+GG +K+I Q +GA +++
Sbjct: 288 PTHKCGLVIGRGGENVKAINQQTGAFVEI 316
Score = 71 (30.1 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 32 GNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV 73
G + + I+ P G G VIGK G+ I +++ RA VK++
Sbjct: 85 GGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMI 124
Score = 70 (29.7 bits), Expect = 2.2e-09, Sum P(4) = 2.2e-09
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTH 185
+I++P+ ++ +IGK G TIK+L+ R +K + +D S+ T+
Sbjct: 93 EIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTN 134
Score = 61 (26.5 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I +++ + ++++P P S V ++G E+V+
Sbjct: 7 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERS--------VSLTGAPESVQ 58
Query: 206 KALFAISAIM 215
KA + I+
Sbjct: 59 KAKMMLDDIV 68
Score = 56 (24.8 bits), Expect = 2.2e-09, Sum P(4) = 2.2e-09
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P + +G VIG+ G IK I+ +G +I
Sbjct: 181 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRI 212
Score = 48 (22.0 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
VP +IG++G IK++++ I+ D + P
Sbjct: 185 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP 222
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 104 (41.7 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 311 RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMA 370
+V P G +IGKGGG I+ IR S A I +D+ N ++ +IT++ +P I+
Sbjct: 424 QVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISG--TPKQIQM-- 479
Query: 371 VEAVLLLQTKINDE 384
A LLQ +++E
Sbjct: 480 --AQYLLQQSVHEE 491
Score = 102 (41.0 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 37/114 (32%), Positives = 55/114 (48%)
Query: 304 QSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESP 363
+SEE V R+L P + G VIGKGG I+ +R A + VDD++ E I ++A
Sbjct: 20 RSEETV-RILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQG--PERTIQISA---- 72
Query: 364 DDIKSMAVEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKR 417
DI+S +E ++ K +E D+ +RLL+ EIR R
Sbjct: 73 -DIES-TLE-IITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDR 123
Score = 100 (40.3 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR S A I + + + DR+ ISGTP+Q + A+ L+Q
Sbjct: 433 GAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQMAQYLLQ 485
Score = 93 (37.8 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 19/70 (27%), Positives = 39/70 (55%)
Query: 131 DNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAME 190
D + R+ +E +IL+PSS + +IGK G I+++R++ + ++ V E T + +
Sbjct: 14 DQKRNRRSEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISAD 73
Query: 191 FDNFVLISGE 200
++ + I E
Sbjct: 74 IESTLEIITE 83
Score = 88 (36.0 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 11 QRDNDRDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARV 70
+R+ + +G+ + ++K + +EE+V RIL P + G+VIGK G+ I +R + +A V
Sbjct: 2 KREMNDEGEGPQ---DQKRNRRSEETV--RILIPSSIAGAVIGKGGQHIQKMRTQYKATV 56
Query: 71 KVVD 74
V D
Sbjct: 57 SVDD 60
Score = 66 (28.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 34 EESVIYRILCPDGVIGSVIGKSGKVINSIRQETRAR-VKVVDPF-PGAKDRVV 84
+E R+L + G VIGK G+ I IR R +KV P + DRVV
Sbjct: 92 DEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQSTDRVV 144
Score = 63 (27.2 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 304 QSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ 340
+ E+ +R+L + G VIGKGG IK IR G +
Sbjct: 91 RDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCR 127
Score = 56 (24.8 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 134 KKRKEKEECQILVPSSQSANIIGKAGATIKRLRSK 168
++R E + ++L+ S + +IGK G IK +R +
Sbjct: 89 EERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDR 123
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 111 (44.1 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAI 360
GA + L ++ P + +G +IGKGG I IR SG+ I +++ ++N +E ++T+T
Sbjct: 384 GAMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGT 443
Query: 361 E 361
+
Sbjct: 444 Q 444
Score = 94 (38.1 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDD 345
+QS+ +R+L P IG +IGKGG I+ I+ ASGA+++ D
Sbjct: 186 AQSKTYPLRLLIPHILIGSIIGKGGTRIREIQDASGARLNASD 228
Score = 92 (37.4 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAA 613
VG +IGK G+ + IR +SG+ I++++ + + +R+ I+GT E + A
Sbjct: 402 VGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMA 450
Score = 89 (36.4 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 38/131 (29%), Positives = 57/131 (43%)
Query: 269 GAARVPDLQGYADTGNTWPVYSTGLSLVSGLVGASQSEE---------LVIRVLCPFNKI 319
G VPD T P+ ST G +QSE+ + IR + +
Sbjct: 64 GDTVVPDAPK-GGVSETQPIQSTASH---GEAAGNQSEQQRPQDESNWIHIRAVISSQEA 119
Query: 320 GRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLLLQT 379
VIGKGG + IR+ SGA+ V D E ++TV+ P D + A L+++T
Sbjct: 120 ATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSG---PQDAVAKAFG--LIIRT 174
Query: 380 KINDEDDDTVT 390
+N+E D +
Sbjct: 175 -LNNEPLDAAS 184
Score = 75 (31.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 23 RRINEK--DEKGNEESVIY--RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDP-FP 77
R +N + D +S Y R+L P +IGS+IGK G I I+ + AR+ D P
Sbjct: 173 RTLNNEPLDAASTAQSKTYPLRLLIPHILIGSIIGKGGTRIREIQDASGARLNASDACLP 232
Query: 78 GAKDRVVTI 86
+ +R + I
Sbjct: 233 LSTERSLVI 241
Score = 69 (29.3 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 26 NEKDEKGNEESVIY-RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVV 84
+E+ +E + I+ R + +VIGK G+ ++ IR+ + A+ V D GA +R++
Sbjct: 96 SEQQRPQDESNWIHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERIL 155
Query: 85 TI 86
T+
Sbjct: 156 TV 157
Score = 61 (26.5 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 145 LVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAV 204
++ S ++A +IGK G + ++R + K T D S A+E + +SG +AV
Sbjct: 113 VISSQEAATVIGKGGENVSQIRRLS--GAKCTVSDYSRG----AVE--RILTVSGPQDAV 164
Query: 205 KKA 207
KA
Sbjct: 165 AKA 167
Score = 54 (24.1 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 16/73 (21%), Positives = 36/73 (49%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+P +IIGK G I+ ++ + ++ DA P + + ++I G ++
Sbjct: 194 RLLIPHILIGSIIGKGGTRIREIQDAS--GARLNASDACLP-----LSTERSLVILGVAD 246
Query: 203 AVKKALFAISAIM 215
AV A + ++ +
Sbjct: 247 AVHIATYYVAVTL 259
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 98 (39.6 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 34/133 (25%), Positives = 62/133 (46%)
Query: 296 VSGLVGASQ-SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+ G G Q +EL +R+L P +G +IGK G TIK+I + + +++D+ K+N
Sbjct: 47 MGGPQGPRQRQQELPLRILVPTQFVGAIIGKEGLTIKNITKQTQSKVDIH-RKENAGATE 105
Query: 355 ITVTAIESPDDIKSMAVEAVL-LLQTKINDEDD-DTVTIRLLVXXXXXXXXXXXXXXXXN 412
+T I S + S A +L +++ + ND + V +++L
Sbjct: 106 KAIT-IHSSKEGCSQACRMILEIMEKEANDTKIVEEVPLKILAHNSLVGRLIGKEGRNLK 164
Query: 413 EIRKRTKADVRIS 425
+I + T + IS
Sbjct: 165 KIEQDTGTKITIS 177
Score = 87 (35.7 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 34 EESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
++ + RIL P +G++IGK G I +I ++T+++V + GA ++ +TI+S
Sbjct: 57 QQELPLRILVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKENAGATEKAITIHS 112
Score = 86 (35.3 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITV 357
A + +L + P GRVIGKGG T+ ++ + A++ V D T D D+ + +
Sbjct: 349 AKEEVKLEAHIKVPSTAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENDDVFVKI 406
Score = 86 (35.3 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNF 194
K + K E I VPS+ + +IGK G T+ L++ T + + P+D + + D F
Sbjct: 350 KEEVKLEAHIKVPSTAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPDEND-----DVF 403
Query: 195 VLISGESEAVKKALFAISAIMYKFSPRE 222
V I G A + A I I+ + +E
Sbjct: 404 VKIIGHFFASQTAQRKIREIVQQVKQQE 431
Score = 82 (33.9 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 28/98 (28%), Positives = 46/98 (46%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVL 196
E+E + +P+ +IGK G IK L SIK+ P+ EP + V+
Sbjct: 271 EQEVVYLFIPTPAVGALIGKKGQHIKELAHFAGASIKIAAPESPDEP--------ERMVI 322
Query: 197 ISGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
I+G EA KA I + + F+ +E++ LE ++
Sbjct: 323 ITGPPEAQFKAQGRIYGKLKEENFFTAKEEVKLEAHIK 360
Score = 82 (33.9 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKS-SRGDRVALISGTPEQKRAAENLI 617
AVG +IGK G ++ + +GA+I+++ +S +R+ +I+G PE + A+ I
Sbjct: 283 AVGALIGKKGQHIKELAHFAGASIKIAAPESPDEPERMVIITGPPEAQFKAQGRI 337
Score = 81 (33.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 31 KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDP-FPGAKDRVVTI 86
+G E+ V+Y + P +G++IGK G+ I + A +K+ P P +R+V I
Sbjct: 268 QGGEQEVVY-LFIPTPAVGALIGKKGQHIKELAHFAGASIKIAAPESPDEPERMVII 323
Score = 78 (32.5 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 306 EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
EE+ +++L + +GR+IGK G +K I Q +G +I + +D
Sbjct: 139 EEVPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISALQD 181
Score = 78 (32.5 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 26/98 (26%), Positives = 47/98 (47%)
Query: 134 KKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDN 193
++R+++ +ILVP+ IIGK G TIK + +T++ + + K+ + T
Sbjct: 54 RQRQQELPLRILVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKENAGATEKA------ 107
Query: 194 FVLISGESEAVKKALFAISAIMYKFSPR----EDIPLE 227
+ I E +A I IM K + E++PL+
Sbjct: 108 -ITIHSSKEGCSQACRMILEIMEKEANDTKIVEEVPLK 144
Score = 76 (31.8 bits), Expect = 8.3e-07, Sum P(3) = 8.3e-07
Identities = 38/169 (22%), Positives = 72/169 (42%)
Query: 288 VYSTGLSLV---SGLVG-----ASQS------EELVIRVLCPFNKIGRVIGKGGGTIKSI 333
++S+G+S++ SGL G A+ S E+ V+ + P +G +IGK G IK +
Sbjct: 239 IFSSGMSVLPPASGLRGSLSTPANYSPLLQGGEQEVVYLFIPTPAVGALIGKKGQHIKEL 298
Query: 334 RQASGAQIDV--DDTKDNRDECVITVTAIESPDDIKSMA-VEAVLLLQTKINDEDDDTVT 390
+GA I + ++ D + VI E+ K+ + L + +++ +
Sbjct: 299 AHFAGASIKIAAPESPDEPERMVIITGPPEA--QFKAQGRIYGKLKEENFFTAKEEVKLE 356
Query: 391 IRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVRISKGDKPKCADANDEL 439
+ V NE++ T A+V + + P D ND++
Sbjct: 357 AHIKVPSTAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTP---DENDDV 402
Score = 69 (29.3 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 25 INEKDEKGNE--ESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
I EK+ + E V +IL + ++G +IGK G+ + I Q+T ++ +
Sbjct: 127 IMEKEANDTKIVEEVPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITI 176
Score = 67 (28.6 bits), Expect = 8.4e-08, Sum P(3) = 8.4e-08
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 132 NDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT 176
ND K E+ +IL +S +IGK G +K++ T T I ++
Sbjct: 133 NDTKIVEEVPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITIS 177
Score = 49 (22.3 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
+ A G+VIGK G + ++ ++ A +
Sbjct: 363 STAAGRVIGKGGKTVNELQNLTSAEV 388
>UNIPROTKB|F1MHR6 [details] [associations]
symbol:LOC505564 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:DAAA02019565 EMBL:DAAA02019566
IPI:IPI00701919 Ensembl:ENSBTAT00000027991 Uniprot:F1MHR6
Length = 708
Score = 90 (36.7 bits), Expect = 4.5e-09, Sum P(4) = 4.5e-09
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
YR+ PDG++G +IG+ G+ IN I+Q++ +V++ G +R V++
Sbjct: 110 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSL 155
Score = 82 (33.9 bits), Expect = 4.5e-09, Sum P(4) = 4.5e-09
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G VIG+ G N+ I + +GA +E+S GD ++ +I G+P+Q A+ LI+
Sbjct: 398 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIE 453
Score = 77 (32.2 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P K G VIGKGG TIK +++ +G + I + D N
Sbjct: 196 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN 237
Score = 73 (30.8 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
++VG VIG++G + I+ +G I+ + +++A I G P++ A +I +
Sbjct: 293 HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQ 352
Query: 623 A 623
+
Sbjct: 353 S 353
Score = 73 (30.8 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
P +K G VIG+GG +K+I Q +GA +++
Sbjct: 393 PTHKCGLVIGRGGENVKAINQQTGAFVEI 421
Score = 71 (30.1 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 32 GNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV 73
G + + I+ P G G VIGK G+ I +++ RA VK++
Sbjct: 190 GGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMI 229
Score = 70 (29.7 bits), Expect = 4.5e-09, Sum P(4) = 4.5e-09
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTH 185
+I++P+ ++ +IGK G TIK+L+ R +K + +D S+ T+
Sbjct: 198 EIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTN 239
Score = 61 (26.5 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I +++ + ++++P P S V ++G E+V+
Sbjct: 112 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERS--------VSLTGAPESVQ 163
Query: 206 KALFAISAIM 215
KA + I+
Sbjct: 164 KAKMMLDDIV 173
Score = 56 (24.8 bits), Expect = 4.5e-09, Sum P(4) = 4.5e-09
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P + +G VIG+ G IK I+ +G +I
Sbjct: 286 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRI 317
Score = 48 (22.0 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
VP +IG++G IK++++ I+ D + P
Sbjct: 290 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP 327
>UNIPROTKB|Q92945 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005654 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 GO:GO:0051028
GO:GO:0000375 eggNOG:NOG300923 HOGENOM:HOG000231552
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:U94832 EMBL:AC011491 EMBL:AC011539 EMBL:BC085004
EMBL:AF093747 EMBL:AF093745 EMBL:AF093748 EMBL:U69126 EMBL:AB209662
IPI:IPI00479786 IPI:IPI00855957 RefSeq:NP_003676.2
UniGene:Hs.727344 PDB:2HH2 PDB:2HH3 PDB:2JVZ PDB:2OPU PDB:2OPV
PDB:4B8T PDBsum:2HH2 PDBsum:2HH3 PDBsum:2JVZ PDBsum:2OPU
PDBsum:2OPV PDBsum:4B8T ProteinModelPortal:Q92945 SMR:Q92945
DIP:DIP-48484N IntAct:Q92945 STRING:Q92945 PhosphoSite:Q92945
DMDM:160380711 REPRODUCTION-2DPAGE:Q92945 PaxDb:Q92945 PRIDE:Q92945
Ensembl:ENST00000398148 GeneID:8570 KEGG:hsa:8570 UCSC:uc002mer.4
GeneCards:GC19M006413 H-InvDB:HIX0040083 HGNC:HGNC:6316
HPA:HPA034739 MIM:603445 neXtProt:NX_Q92945 PharmGKB:PA30097
InParanoid:Q92945 OMA:QASGNCH PhylomeDB:Q92945 ChEMBL:CHEMBL1795105
ChiTaRS:KHSRP EvolutionaryTrace:Q92945 GenomeRNAi:8570
NextBio:32149 PMAP-CutDB:Q92945 ArrayExpress:Q92945 Bgee:Q92945
CleanEx:HS_KHSRP Genevestigator:Q92945 GermOnline:ENSG00000088247
Uniprot:Q92945
Length = 711
Score = 90 (36.7 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
YR+ PDG++G +IG+ G+ IN I+Q++ +V++ G +R V++
Sbjct: 149 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSL 194
Score = 82 (33.9 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G VIG+ G N+ I + +GA +E+S GD ++ +I G+P+Q A+ LI+
Sbjct: 437 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIE 492
Score = 77 (32.2 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P K G VIGKGG TIK +++ +G + I + D N
Sbjct: 235 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN 276
Score = 73 (30.8 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
++VG VIG++G + I+ +G I+ + +++A I G P++ A +I +
Sbjct: 332 HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQ 391
Query: 623 A 623
+
Sbjct: 392 S 392
Score = 73 (30.8 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
P +K G VIG+GG +K+I Q +GA +++
Sbjct: 432 PTHKCGLVIGRGGENVKAINQQTGAFVEI 460
Score = 71 (30.1 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 32 GNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV 73
G + + I+ P G G VIGK G+ I +++ RA VK++
Sbjct: 229 GGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMI 268
Score = 70 (29.7 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTH 185
+I++P+ ++ +IGK G TIK+L+ R +K + +D S+ T+
Sbjct: 237 EIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTN 278
Score = 61 (26.5 bits), Expect = 4.7e-05, Sum P(3) = 4.7e-05
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I +++ + ++++P P S V ++G E+V+
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERS--------VSLTGAPESVQ 202
Query: 206 KALFAISAIM 215
KA + I+
Sbjct: 203 KAKMMLDDIV 212
Score = 56 (24.8 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P + +G VIG+ G IK I+ +G +I
Sbjct: 325 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRI 356
Score = 48 (22.0 bits), Expect = 4.1e-05, Sum P(3) = 4.1e-05
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
VP +IG++G IK++++ I+ D + P
Sbjct: 329 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP 366
>UNIPROTKB|F1NYJ3 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00819889
Ensembl:ENSGALT00000006277 ArrayExpress:F1NYJ3 Uniprot:F1NYJ3
Length = 508
Score = 90 (36.7 bits), Expect = 4.7e-09, Sum P(4) = 4.7e-09
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDS---KSSRGDRVALISGTPEQKRAAENLIQ 618
A+ G VIGK G N+ +I + SGA +E+ + + G R+ I G P+Q A +LI
Sbjct: 352 ADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIELARHLID 411
Query: 619 AFIMAT 624
+ T
Sbjct: 412 EKVGGT 417
Score = 90 (36.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 36/158 (22%), Positives = 62/158 (39%)
Query: 29 DEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVD--PFPGAKDRVVTI 86
D GN S I IL P +G VIGK G+ I +++ T ++ ++ P P D+ + I
Sbjct: 146 DVDGN--STIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGADKPLRI 203
Query: 87 YSHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDND-KKRKEKEECQIL 145
+ A++ +L++ ND R ++
Sbjct: 204 ---------------TGDAFKVQQAREMVLEIIREKDQADFRGVRNDFSSRMGGGSIEVS 248
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
VP +IG+ G IK++++ I+ P D P
Sbjct: 249 VPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP 286
Score = 88 (36.0 bits), Expect = 8.3e-07, Sum P(3) = 8.3e-07
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDIK 367
P +K G VIGKGG IKSI Q SGA +++ + N D V T P I+
Sbjct: 351 PADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIE 404
Score = 84 (34.6 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 34/149 (22%), Positives = 59/149 (39%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDE--CVITVTAIESPDDIKSMAVE 372
P +G +IG+GG I I+ SG +I + E CV+T T ES + K + +
Sbjct: 74 PDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVLTGTP-ESIEQAKRLLGQ 132
Query: 373 AVLLLQTKI---NDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKAD-VRISKGD 428
V + ND D ++ +L+ ++++RT + I G
Sbjct: 133 IVDRCRNGPGFHNDVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGP 192
Query: 429 KPKCADANDELXXXXXXXXXXRDALVQII 457
P AD + R+ +++II
Sbjct: 193 MPTGADKPLRITGDAFKVQQAREMVLEII 221
Score = 80 (33.2 bits), Expect = 4.7e-09, Sum P(4) = 4.7e-09
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+IL+P+S+ +IGK G TIK+L+ RT +K + +D PT + D + I+G++
Sbjct: 155 EILIPASKVGLVIGKGGETIKQLQE--RTGVKMIMIQDGPMPTGA-----DKPLRITGDA 207
Query: 202 EAVKKA 207
V++A
Sbjct: 208 FKVQQA 213
Score = 80 (33.2 bits), Expect = 5.1e-07, Sum P(3) = 5.1e-07
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 312 VLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
+L P +K+G VIGKGG TIK +++ +G ++
Sbjct: 156 ILIPASKVGLVIGKGGETIKQLQERTGVKM 185
Score = 78 (32.5 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
AVG VIG+ G + I+ +G I+ +RVA + G P++ + A ++I I+
Sbjct: 253 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERVAQVMGLPDRCQHAAHIISELIL 311
Score = 64 (27.6 bits), Expect = 4.7e-09, Sum P(4) = 4.7e-09
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 4 SGKRYRSQRDNDRDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIR 63
SG RD +R G NQ + + E+ +++ PD ++G +IG+ G+ I+ I+
Sbjct: 40 SGLHGAQIRDTERIG-NQLGALVHQRAVITED---FKV--PDKMVGFIIGRGGEQISRIQ 93
Query: 64 QETRARVKVVDPFPGAKDR 82
E+ ++++ G +R
Sbjct: 94 IESGCKIQIAPDSGGMPER 112
Score = 63 (27.2 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAM 189
VP IIG+ G I R++ ++ I++ P P C +
Sbjct: 73 VPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVL 116
Score = 57 (25.1 bits), Expect = 4.7e-09, Sum P(4) = 4.7e-09
Identities = 22/75 (29%), Positives = 33/75 (44%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I E V V + PD +
Sbjct: 245 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERVAQVMGL--PDRCQHA 302
Query: 370 A-VEAVLLLQTKIND 383
A + + L+L + D
Sbjct: 303 AHIISELILTAQERD 317
>UNIPROTKB|E2QVT3 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
Ensembl:ENSCAFT00000029641 Uniprot:E2QVT3
Length = 743
Score = 90 (36.7 bits), Expect = 5.6e-09, Sum P(4) = 5.6e-09
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
YR+ PDG++G +IG+ G+ IN I+Q++ +V++ G +R V++
Sbjct: 146 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSL 191
Score = 82 (33.9 bits), Expect = 5.6e-09, Sum P(4) = 5.6e-09
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G VIG+ G N+ I + +GA +E+S GD ++ +I G+P+Q A+ LI+
Sbjct: 434 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIE 489
Score = 77 (32.2 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P K G VIGKGG TIK +++ +G + I + D N
Sbjct: 232 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN 273
Score = 73 (30.8 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
++VG VIG++G + I+ +G I+ + +++A I G P++ A +I +
Sbjct: 329 HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQ 388
Query: 623 A 623
+
Sbjct: 389 S 389
Score = 73 (30.8 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
P +K G VIG+GG +K+I Q +GA +++
Sbjct: 429 PTHKCGLVIGRGGENVKAINQQTGAFVEI 457
Score = 71 (30.1 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 32 GNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV 73
G + + I+ P G G VIGK G+ I +++ RA VK++
Sbjct: 226 GGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMI 265
Score = 70 (29.7 bits), Expect = 5.6e-09, Sum P(4) = 5.6e-09
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTH 185
+I++P+ ++ +IGK G TIK+L+ R +K + +D S+ T+
Sbjct: 234 EIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTN 275
Score = 61 (26.5 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I +++ + ++++P P S V ++G E+V+
Sbjct: 148 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERS--------VSLTGAPESVQ 199
Query: 206 KALFAISAIM 215
KA + I+
Sbjct: 200 KAKMMLDDIV 209
Score = 56 (24.8 bits), Expect = 5.6e-09, Sum P(4) = 5.6e-09
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P + +G VIG+ G IK I+ +G +I
Sbjct: 322 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRI 353
Score = 48 (22.0 bits), Expect = 4.8e-05, Sum P(3) = 4.8e-05
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
VP +IG++G IK++++ I+ D + P
Sbjct: 326 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP 363
>UNIPROTKB|F1SBT6 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:CU929921
Ensembl:ENSSSCT00000014785 Uniprot:F1SBT6
Length = 747
Score = 90 (36.7 bits), Expect = 5.8e-09, Sum P(4) = 5.8e-09
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
YR+ PDG++G +IG+ G+ IN I+Q++ +V++ G +R V++
Sbjct: 149 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSL 194
Score = 82 (33.9 bits), Expect = 5.8e-09, Sum P(4) = 5.8e-09
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G VIG+ G N+ I + +GA +E+S GD ++ +I G+P+Q A+ LI+
Sbjct: 437 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIE 492
Score = 77 (32.2 bits), Expect = 6.3e-08, Sum P(3) = 6.3e-08
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P K G VIGKGG TIK +++ +G + I + D N
Sbjct: 235 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN 276
Score = 73 (30.8 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
++VG VIG++G + I+ +G I+ + +++A I G P++ A +I +
Sbjct: 332 HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQ 391
Query: 623 A 623
+
Sbjct: 392 S 392
Score = 73 (30.8 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
P +K G VIG+GG +K+I Q +GA +++
Sbjct: 432 PTHKCGLVIGRGGENVKAINQQTGAFVEI 460
Score = 71 (30.1 bits), Expect = 0.00066, Sum P(3) = 0.00066
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 32 GNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV 73
G + + I+ P G G VIGK G+ I +++ RA VK++
Sbjct: 229 GGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMI 268
Score = 70 (29.7 bits), Expect = 5.8e-09, Sum P(4) = 5.8e-09
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTH 185
+I++P+ ++ +IGK G TIK+L+ R +K + +D S+ T+
Sbjct: 237 EIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTN 278
Score = 61 (26.5 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I +++ + ++++P P S V ++G E+V+
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERS--------VSLTGAPESVQ 202
Query: 206 KALFAISAIM 215
KA + I+
Sbjct: 203 KAKMMLDDIV 212
Score = 56 (24.8 bits), Expect = 5.8e-09, Sum P(4) = 5.8e-09
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P + +G VIG+ G IK I+ +G +I
Sbjct: 325 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRI 356
Score = 48 (22.0 bits), Expect = 4.8e-05, Sum P(3) = 4.8e-05
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
VP +IG++G IK++++ I+ D + P
Sbjct: 329 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP 366
>RGD|621828 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621828 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0043025 GO:GO:0030425
GO:GO:0006397 GO:GO:0006351 GO:GO:0003730 GO:GO:0051028
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:AF308818 IPI:IPI00200920 RefSeq:NP_598286.1
UniGene:Rn.92643 ProteinModelPortal:Q99PF5 SMR:Q99PF5
PhosphoSite:Q99PF5 REPRODUCTION-2DPAGE:Q99PF5 PRIDE:Q99PF5
GeneID:171137 KEGG:rno:171137 NextBio:621918 Genevestigator:Q99PF5
Uniprot:Q99PF5
Length = 721
Score = 90 (36.7 bits), Expect = 6.2e-09, Sum P(4) = 6.2e-09
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
YR+ PDG++G +IG+ G+ IN I+Q++ +V++ G +R V++
Sbjct: 150 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSL 195
Score = 81 (33.6 bits), Expect = 6.2e-09, Sum P(4) = 6.2e-09
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G VIG+ G N+ I + +GA +E+S GD ++ +I G+P+Q A+ LI+
Sbjct: 438 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIE 493
Score = 77 (32.2 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P K G VIGKGG TIK +++ +G + I + D N
Sbjct: 236 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN 277
Score = 73 (30.8 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
++VG VIG++G + I+ +G I+ + +++A I G P++ A +I +
Sbjct: 333 HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQ 392
Query: 623 A 623
+
Sbjct: 393 S 393
Score = 73 (30.8 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
P +K G VIG+GG +K+I Q +GA +++
Sbjct: 433 PTHKCGLVIGRGGENVKAINQQTGAFVEI 461
Score = 71 (30.1 bits), Expect = 0.00076, Sum P(3) = 0.00076
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 32 GNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV 73
G + + I+ P G G VIGK G+ I +++ RA VK++
Sbjct: 230 GGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMI 269
Score = 70 (29.7 bits), Expect = 6.2e-09, Sum P(4) = 6.2e-09
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTH 185
+I++P+ ++ +IGK G TIK+L+ R +K + +D S+ T+
Sbjct: 238 EIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTN 279
Score = 61 (26.5 bits), Expect = 6.3e-05, Sum P(3) = 6.3e-05
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I +++ + ++++P P S V ++G E+V+
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERS--------VSLTGAPESVQ 203
Query: 206 KALFAISAIM 215
KA + I+
Sbjct: 204 KAKMMLDDIV 213
Score = 56 (24.8 bits), Expect = 6.2e-09, Sum P(4) = 6.2e-09
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P + +G VIG+ G IK I+ +G +I
Sbjct: 326 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRI 357
Score = 48 (22.0 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
VP +IG++G IK++++ I+ D + P
Sbjct: 330 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP 367
>UNIPROTKB|F1NGC0 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00578263
Ensembl:ENSGALT00000039554 ArrayExpress:F1NGC0 Uniprot:F1NGC0
Length = 539
Score = 90 (36.7 bits), Expect = 6.3e-09, Sum P(4) = 6.3e-09
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDS---KSSRGDRVALISGTPEQKRAAENLIQ 618
A+ G VIGK G N+ +I + SGA +E+ + + G R+ I G P+Q A +LI
Sbjct: 381 ADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIELARHLID 440
Query: 619 AFIMAT 624
+ T
Sbjct: 441 EKVGGT 446
Score = 90 (36.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 36/158 (22%), Positives = 62/158 (39%)
Query: 29 DEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVD--PFPGAKDRVVTI 86
D GN S I IL P +G VIGK G+ I +++ T ++ ++ P P D+ + I
Sbjct: 175 DVDGN--STIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGADKPLRI 232
Query: 87 YSHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDND-KKRKEKEECQIL 145
+ A++ +L++ ND R ++
Sbjct: 233 ---------------TGDAFKVQQAREMVLEIIREKDQADFRGVRNDFSSRMGGGSIEVS 277
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
VP +IG+ G IK++++ I+ P D P
Sbjct: 278 VPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP 315
Score = 88 (36.0 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDIK 367
P +K G VIGKGG IKSI Q SGA +++ + N D V T P I+
Sbjct: 380 PADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIE 433
Score = 84 (34.6 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 34/149 (22%), Positives = 59/149 (39%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDE--CVITVTAIESPDDIKSMAVE 372
P +G +IG+GG I I+ SG +I + E CV+T T ES + K + +
Sbjct: 103 PDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVLTGTP-ESIEQAKRLLGQ 161
Query: 373 AVLLLQTKI---NDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKAD-VRISKGD 428
V + ND D ++ +L+ ++++RT + I G
Sbjct: 162 IVDRCRNGPGFHNDVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGP 221
Query: 429 KPKCADANDELXXXXXXXXXXRDALVQII 457
P AD + R+ +++II
Sbjct: 222 MPTGADKPLRITGDAFKVQQAREMVLEII 250
Score = 80 (33.2 bits), Expect = 6.3e-09, Sum P(4) = 6.3e-09
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+IL+P+S+ +IGK G TIK+L+ RT +K + +D PT + D + I+G++
Sbjct: 184 EILIPASKVGLVIGKGGETIKQLQE--RTGVKMIMIQDGPMPTGA-----DKPLRITGDA 236
Query: 202 EAVKKA 207
V++A
Sbjct: 237 FKVQQA 242
Score = 80 (33.2 bits), Expect = 6.4e-07, Sum P(3) = 6.4e-07
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 312 VLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
+L P +K+G VIGKGG TIK +++ +G ++
Sbjct: 185 ILIPASKVGLVIGKGGETIKQLQERTGVKM 214
Score = 78 (32.5 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
AVG VIG+ G + I+ +G I+ +RVA + G P++ + A ++I I+
Sbjct: 282 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERVAQVMGLPDRCQHAAHIISELIL 340
Score = 64 (27.6 bits), Expect = 6.3e-09, Sum P(4) = 6.3e-09
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 4 SGKRYRSQRDNDRDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIR 63
SG RD +R G NQ + + E+ +++ PD ++G +IG+ G+ I+ I+
Sbjct: 69 SGLHGAQIRDTERIG-NQLGALVHQRAVITED---FKV--PDKMVGFIIGRGGEQISRIQ 122
Query: 64 QETRARVKVVDPFPGAKDR 82
E+ ++++ G +R
Sbjct: 123 IESGCKIQIAPDSGGMPER 141
Score = 63 (27.2 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAM 189
VP IIG+ G I R++ ++ I++ P P C +
Sbjct: 102 VPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVL 145
Score = 57 (25.1 bits), Expect = 6.3e-09, Sum P(4) = 6.3e-09
Identities = 22/75 (29%), Positives = 33/75 (44%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I E V V + PD +
Sbjct: 274 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERVAQVMGL--PDRCQHA 331
Query: 370 A-VEAVLLLQTKIND 383
A + + L+L + D
Sbjct: 332 AHIISELILTAQERD 346
>MGI|MGI:1336214 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0030425 "dendrite"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0051028 "mRNA transport" evidence=IEA] Reactome:REACT_78136
Reactome:REACT_88316 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS00178 PROSITE:PS50084 SMART:SM00322
MGI:MGI:1336214 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003723 GO:GO:0051028 GO:GO:0010494 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8570 OMA:QASGNCH EMBL:AK156541
EMBL:CT571247 EMBL:BC064454 EMBL:BC108414 IPI:IPI00462934
RefSeq:NP_034743.3 UniGene:Mm.34296 HSSP:Q91WJ8
ProteinModelPortal:Q3U0V1 SMR:Q3U0V1 IntAct:Q3U0V1 STRING:Q3U0V1
PhosphoSite:Q3U0V1 PaxDb:Q3U0V1 PRIDE:Q3U0V1 DNASU:16549
Ensembl:ENSMUST00000007814 GeneID:16549 KEGG:mmu:16549
UCSC:uc008ddr.2 GeneTree:ENSGT00650000093048 InParanoid:Q3U0V1
OrthoDB:EOG451DQX NextBio:290019 Bgee:Q3U0V1 CleanEx:MM_KHSRP
Genevestigator:Q3U0V1 Uniprot:Q3U0V1
Length = 748
Score = 90 (36.7 bits), Expect = 7.3e-09, Sum P(4) = 7.3e-09
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
YR+ PDG++G +IG+ G+ IN I+Q++ +V++ G +R V++
Sbjct: 150 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSL 195
Score = 81 (33.6 bits), Expect = 7.3e-09, Sum P(4) = 7.3e-09
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G VIG+ G N+ I + +GA +E+S GD ++ +I G+P+Q A+ LI+
Sbjct: 438 GLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIE 493
Score = 77 (32.2 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P K G VIGKGG TIK +++ +G + I + D N
Sbjct: 236 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN 277
Score = 73 (30.8 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
++VG VIG++G + I+ +G I+ + +++A I G P++ A +I +
Sbjct: 333 HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQ 392
Query: 623 A 623
+
Sbjct: 393 S 393
Score = 73 (30.8 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
P +K G VIG+GG +K+I Q +GA +++
Sbjct: 433 PTHKCGLVIGRGGENVKAINQQTGAFVEI 461
Score = 71 (30.1 bits), Expect = 0.00085, Sum P(3) = 0.00085
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 32 GNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV 73
G + + I+ P G G VIGK G+ I +++ RA VK++
Sbjct: 230 GGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMI 269
Score = 70 (29.7 bits), Expect = 7.3e-09, Sum P(4) = 7.3e-09
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTH 185
+I++P+ ++ +IGK G TIK+L+ R +K + +D S+ T+
Sbjct: 238 EIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMILIQDGSQNTN 279
Score = 61 (26.5 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I +++ + ++++P P S V ++G E+V+
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERS--------VSLTGAPESVQ 203
Query: 206 KALFAISAIM 215
KA + I+
Sbjct: 204 KAKMMLDDIV 213
Score = 56 (24.8 bits), Expect = 7.3e-09, Sum P(4) = 7.3e-09
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P + +G VIG+ G IK I+ +G +I
Sbjct: 326 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRI 357
Score = 48 (22.0 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
VP +IG++G IK++++ I+ D + P
Sbjct: 330 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP 367
>UNIPROTKB|J9P1I9 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
EMBL:AAEX03006837 EMBL:AAEX03006838 Ensembl:ENSCAFT00000048747
Uniprot:J9P1I9
Length = 487
Score = 89 (36.4 bits), Expect = 7.7e-09, Sum P(4) = 7.7e-09
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
A+ G VIGK G N+ +I + SGA +E+ + D R+ I G P+Q A +LI
Sbjct: 363 ADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEVARHLID 422
Query: 619 AFIMAT 624
+ T
Sbjct: 423 EKVGGT 428
Score = 88 (36.0 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 300 VGASQS-EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITV 357
VGA +E+ V P +K G VIGKGG IKSI Q SGA +++ + N D +
Sbjct: 348 VGAPGGVQEITYTV--PADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIF 405
Query: 358 TAIESPDDIK 367
T P I+
Sbjct: 406 TIRGIPQQIE 415
Score = 87 (35.7 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 44/194 (22%), Positives = 71/194 (36%)
Query: 296 VSGLVGASQSEELVI--RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDE- 352
V +GA + VI P +G +IG+GG I I+ SG +I + E
Sbjct: 64 VGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Query: 353 -CVITVTAIESPDDIKSMAVEAVLLLQTKI---NDEDDDTVTIRLLVXXXXXXXXXXXXX 408
CV+T T ES + K + + V + ND D ++ +L+
Sbjct: 124 PCVLTGTP-ESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQEILIPASKVGLVIGKGG 182
Query: 409 XXXNEIRKRTKAD-VRISKGDKPKCADANDELXXXXXXXXXXRDALVQIIXXXXXXXXXX 467
++++RT V I G P AD + R+ +++II
Sbjct: 183 ETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMVLEIIREKDQADFRG 242
Query: 468 XXGSRNPPVGADHI 481
G + VG I
Sbjct: 243 VRGDFSARVGGGSI 256
Score = 80 (33.2 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 29 DEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVD--PFPGAKDRVVTI 86
D GN S I IL P +G VIGK G+ I +++ T ++ ++ P P D+ + I
Sbjct: 157 DIDGN--STIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRI 214
Score = 78 (32.5 bits), Expect = 7.7e-09, Sum P(4) = 7.7e-09
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+IL+P+S+ +IGK G TIK+L+ RT +K V +D PT + D + I+G+
Sbjct: 166 EILIPASKVGLVIGKGGETIKQLQE--RTGVKMVMIQDGPLPTGA-----DKPLRITGDP 218
Query: 202 EAVKKA 207
V++A
Sbjct: 219 FKVQQA 224
Score = 73 (30.8 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
AVG VIG+ G + I+ +G I+ +R A + G P++ + A ++I I+
Sbjct: 264 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVINELIL 322
Score = 67 (28.6 bits), Expect = 7.7e-09, Sum P(4) = 7.7e-09
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 44 PDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
PD ++G +IG+ G+ I+ I+ E+ ++++ G +R
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Score = 60 (26.2 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAM 189
VP IIG+ G I R+++++ I++ + + P C +
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVL 127
Score = 54 (24.1 bits), Expect = 7.7e-09, Sum P(4) = 7.7e-09
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P +G VIG+ G IK I+ +G +I
Sbjct: 256 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRI 287
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 105 (42.0 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 53 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 112
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
P I + V++L++
Sbjct: 113 --PQSIIECVKQICVVMLES 130
Score = 91 (37.1 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 59 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 109
Score = 85 (35.0 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 297 SGLVGASQ--SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+GL ++Q S EL I P + IG +IG+ G I IRQ SGAQI + + + +
Sbjct: 237 AGLDASAQTTSHELTI----PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQ 292
Query: 355 ITVT 358
+T+T
Sbjct: 293 VTIT 296
Score = 78 (32.5 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++++ DR I+G+ A+ LI
Sbjct: 257 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 309
Score = 76 (31.8 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G IK +R T ++V T + + I+G +
Sbjct: 62 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST-------ERAITIAGIPQ 114
Query: 203 AVKKALFAISAIMYKFSPR 221
++ + + I +M + P+
Sbjct: 115 SIIECVKQICVVMLESPPK 133
Score = 59 (25.8 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQE 65
E G ++ R+L +GS+IGK G+ + +R+E
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREE 42
Score = 58 (25.5 bits), Expect = 9.8e-09, Sum P(3) = 9.8e-09
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
++L+ + +IIGK G ++K++R + +S AS P
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREEDISSSMTNSTAASRP 57
>UNIPROTKB|F1PEW1 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
OMA:AAPHQNT EMBL:AAEX03006837 EMBL:AAEX03006838
Ensembl:ENSCAFT00000031728 Uniprot:F1PEW1
Length = 547
Score = 89 (36.4 bits), Expect = 1.3e-08, Sum P(4) = 1.3e-08
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
A+ G VIGK G N+ +I + SGA +E+ + D R+ I G P+Q A +LI
Sbjct: 363 ADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEVARHLID 422
Query: 619 AFIMAT 624
+ T
Sbjct: 423 EKVGGT 428
Score = 88 (36.0 bits), Expect = 8.7e-07, Sum P(3) = 8.7e-07
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 300 VGASQS-EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITV 357
VGA +E+ V P +K G VIGKGG IKSI Q SGA +++ + N D +
Sbjct: 348 VGAPGGVQEITYTV--PADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIF 405
Query: 358 TAIESPDDIK 367
T P I+
Sbjct: 406 TIRGIPQQIE 415
Score = 87 (35.7 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 44/194 (22%), Positives = 71/194 (36%)
Query: 296 VSGLVGASQSEELVI--RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDE- 352
V +GA + VI P +G +IG+GG I I+ SG +I + E
Sbjct: 64 VGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Query: 353 -CVITVTAIESPDDIKSMAVEAVLLLQTKI---NDEDDDTVTIRLLVXXXXXXXXXXXXX 408
CV+T T ES + K + + V + ND D ++ +L+
Sbjct: 124 PCVLTGTP-ESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQEILIPASKVGLVIGKGG 182
Query: 409 XXXNEIRKRTKAD-VRISKGDKPKCADANDELXXXXXXXXXXRDALVQIIXXXXXXXXXX 467
++++RT V I G P AD + R+ +++II
Sbjct: 183 ETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMVLEIIREKDQADFRG 242
Query: 468 XXGSRNPPVGADHI 481
G + VG I
Sbjct: 243 VRGDFSARVGGGSI 256
Score = 80 (33.2 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 29 DEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVD--PFPGAKDRVVTI 86
D GN S I IL P +G VIGK G+ I +++ T ++ ++ P P D+ + I
Sbjct: 157 DIDGN--STIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRI 214
Score = 78 (32.5 bits), Expect = 1.3e-08, Sum P(4) = 1.3e-08
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+IL+P+S+ +IGK G TIK+L+ RT +K V +D PT + D + I+G+
Sbjct: 166 EILIPASKVGLVIGKGGETIKQLQE--RTGVKMVMIQDGPLPTGA-----DKPLRITGDP 218
Query: 202 EAVKKA 207
V++A
Sbjct: 219 FKVQQA 224
Score = 73 (30.8 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
AVG VIG+ G + I+ +G I+ +R A + G P++ + A ++I I+
Sbjct: 264 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVINELIL 322
Score = 67 (28.6 bits), Expect = 1.3e-08, Sum P(4) = 1.3e-08
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 44 PDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
PD ++G +IG+ G+ I+ I+ E+ ++++ G +R
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Score = 60 (26.2 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAM 189
VP IIG+ G I R+++++ I++ + + P C +
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVL 127
Score = 54 (24.1 bits), Expect = 1.3e-08, Sum P(4) = 1.3e-08
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P +G VIG+ G IK I+ +G +I
Sbjct: 256 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRI 287
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 106 (42.4 bits), Expect = 0.00060, P = 0.00060
Identities = 37/138 (26%), Positives = 65/138 (47%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G++ + L IR+L ++G +IGK G ++K +R+ SGA+I++ + N E +IT
Sbjct: 3 TGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAV------EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXX 410
+ + K+ A+ E + T VT+RL+V
Sbjct: 61 LAGPTNAI-FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 411 XNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 120 IKEIRESTGAQVQVA-GD 136
Score = 104 (41.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 151
Score = 79 (32.9 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Score = 74 (31.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
+++VP+SQ ++IGK G IK +R T ++V
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 71 (30.1 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGK G + IR+ +GA ++++ D + +R I+G P+
Sbjct: 106 ASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQ 153
Score = 58 (25.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G ++K++R ++ I + SE +C + + ++G +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEG--NCP---ERIITLAGPTN 66
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA FA+ I+ K EDI T
Sbjct: 67 AIFKA-FAM--IIDKLE--EDISSSMT 88
>FB|FBgn0261552 [details] [associations]
symbol:ps "pasilla" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEP] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0000398 HSSP:Q9UNW9 FlyBase:FBgn0261552 EMBL:BT001623
ProteinModelPortal:Q8IGS7 PRIDE:Q8IGS7 InParanoid:Q8IGS7
ArrayExpress:Q8IGS7 Bgee:Q8IGS7 Uniprot:Q8IGS7
Length = 605
Score = 134 (52.2 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 47/171 (27%), Positives = 81/171 (47%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRVVTIYSHXXXXXXX 96
+IL P G++IGK G+ I S++++T ARVK+ D +PG +RV I
Sbjct: 102 KILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLI----TGSTEA 157
Query: 97 XXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDNDKKRKEKEECQILVPSSQSANIIG 156
+ D K+ TD+ + ++ ++ +ILVP+S + IIG
Sbjct: 158 IMVVMEFIMDKIREKPDLTNKI---------VDTDSKQTQERDKQVKILVPNSTAGMIIG 208
Query: 157 KAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKA 207
K GA IK+++ ++ + ++++ K PT E + I G+ E K A
Sbjct: 209 KGGAFIKQIKEESGSYVQISQK----PTDVSLQE--RCITIIGDKENNKNA 253
Score = 74 (31.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDS---KSSRGDRVALISGTPEQKRAAENLIQ 618
+G ++G +G +L I+ +SGA +++S +R+ I+G P A+ LI+
Sbjct: 528 IGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIE 584
Score = 68 (29.0 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 33/130 (25%), Positives = 60/130 (46%)
Query: 268 LGAARVPDLQGYADTGNTWPVYST-GLSLVSGLVGASQSE---ELVIR----VLCPFNKI 319
LG+A P + N++ + +T G + + L G S+S +L + V P I
Sbjct: 469 LGSATAPAATPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDLSSKDSKNVEVPEVII 528
Query: 320 GRVIGKGGGTIKSIRQASGAQIDVDD----TKDNRDECVITVTAIESPDDIKSMAVEAVL 375
G ++G G ++ I+ SGA + + R+ ++T+T P I +A
Sbjct: 529 GAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNR-IVTITG--QPSAI----AKAQY 581
Query: 376 LLQTKINDED 385
L++ KIN+E+
Sbjct: 582 LIEQKINEEE 591
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 90 (36.7 bits), Expect = 1.7e-08, Sum P(4) = 1.7e-08
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLI 617
A+ G VIGK G N+ +I + SGA +E+ + D RV I G P+Q A +LI
Sbjct: 363 ADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGLRVFTIRGVPQQIEVARHLI 421
Score = 87 (35.7 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 41/170 (24%), Positives = 65/170 (38%)
Query: 296 VSGLVGASQSEELVI--RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDE- 352
V +GA + VI P +G +IG+GG I I+ SG +I + E
Sbjct: 64 VGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Query: 353 -CVITVTAIESPDDIKSMAVEAVLLLQTKI---NDEDDDTVTIRLLVXXXXXXXXXXXXX 408
CV+T T ES + K + + V + ND D + LL+
Sbjct: 124 PCVLTGTP-ESIEQAKRLLGQIVDRCRNGPGFHNDVDGSSTIQELLIPASKVGLVIGKGG 182
Query: 409 XXXNEIRKRTKAD-VRISKGDKPKCADANDELXXXXXXXXXXRDALVQII 457
++++RT V I G P AD + R+ +++II
Sbjct: 183 ETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMVLEII 232
Score = 86 (35.3 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDIK 367
P +K G VIGKGG IKSI Q SGA +++ + N D + T P I+
Sbjct: 362 PADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGLRVFTIRGVPQQIE 415
Score = 77 (32.2 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 31/151 (20%), Positives = 58/151 (38%)
Query: 36 SVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVD--PFPGAKDRVVTIYSHXXXX 93
S I +L P +G VIGK G+ I +++ T ++ ++ P P D+ + I
Sbjct: 162 STIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRI------- 214
Query: 94 XXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDND-KKRKEKEECQILVPSSQSA 152
+ A++ +L++ D R ++ VP
Sbjct: 215 --------TGDPFKVQQAREMVLEIIREKDQADFRGVRGDFSSRMGGGSIEVSVPRFAVG 266
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
+IG+ G IK++++ I+ P D P
Sbjct: 267 IVIGRNGEMIKKIQNDAGVRIQFKPDDGISP 297
Score = 76 (31.8 bits), Expect = 1.7e-08, Sum P(4) = 1.7e-08
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
++L+P+S+ +IGK G TIK+L+ RT +K V +D PT + D + I+G+
Sbjct: 166 ELLIPASKVGLVIGKGGETIKQLQE--RTGVKMVMIQDGPLPTGA-----DKPLRITGDP 218
Query: 202 EAVKKA 207
V++A
Sbjct: 219 FKVQQA 224
Score = 73 (30.8 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
AVG VIG+ G + I+ +G I+ +R A + G P++ + A ++I I+
Sbjct: 264 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVISELIL 322
Score = 67 (28.6 bits), Expect = 1.7e-08, Sum P(4) = 1.7e-08
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 44 PDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
PD ++G +IG+ G+ I+ I+ E+ ++++ G +R
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Score = 60 (26.2 bits), Expect = 0.00062, Sum P(3) = 0.00062
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAM 189
VP IIG+ G I R+++++ I++ + + P C +
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVL 127
Score = 54 (24.1 bits), Expect = 1.7e-08, Sum P(4) = 1.7e-08
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P +G VIG+ G IK I+ +G +I
Sbjct: 256 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRI 287
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 103 (41.3 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK GA IK+L SIK+ P A P S + V+I
Sbjct: 304 EQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAP--AEGPDVS-----ERMVII 356
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F+P+E++ LE +R
Sbjct: 357 TGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIR 393
Score = 96 (38.9 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 301 GASQSEEL--VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
G+SQ+ ++ +R+L P +G +IGK G TIK+I + + +++D+ K+N VT
Sbjct: 106 GSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIH-RKENSGAAEKPVT 164
Query: 359 AIESPDDIKSMAVEAVLLLQTKINDE 384
+P+ S A +L + K DE
Sbjct: 165 IHATPEGT-SEACRMILEIMQKEADE 189
Score = 86 (35.3 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAAENLI 617
AVG +IGK G+++ + + +GA+I+++ ++ +R+ +I+G PE + A+ I
Sbjct: 316 AVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 370
Score = 86 (35.3 bits), Expect = 8.7e-07, Sum P(3) = 8.7e-07
Identities = 29/140 (20%), Positives = 60/140 (42%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD-NRDECVITVTAIE 361
S E+ ++ + P +G +IGK G IK + + +GA I + + + E ++ +T
Sbjct: 301 SYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG-- 358
Query: 362 SPD-DIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
P+ K+ + L + N +++ + + V NE++ T
Sbjct: 359 PPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTS 418
Query: 420 ADVRISKGDKPKCADANDEL 439
A+V + + P D N+E+
Sbjct: 419 AEVIVPRDQTP---DENEEV 435
Score = 85 (35.0 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
RIL P +G++IGK G I +I ++T++RV + GA ++ VTI++
Sbjct: 118 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHA 167
Score = 83 (34.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
K + K E I VPSS + +IGK G T+ L++ T + + P+D
Sbjct: 383 KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRD 426
Score = 78 (32.5 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
E DE E + +IL +G++G +IGK G+ + I ET ++ +
Sbjct: 186 EADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITI 231
Score = 77 (32.2 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L +GR+IGK G +K I +G +I + +D
Sbjct: 193 AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 236
Score = 73 (30.8 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+ILVP+ IIGK G TIK + +T++ + + K+ +S A E V I E
Sbjct: 118 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE-----NSGAAEKP--VTIHATPE 170
Query: 203 AVKKALFAISAIMYKFSPR----EDIPLE 227
+A I IM K + E+IPL+
Sbjct: 171 GTSEACRMILEIMQKEADETKLAEEIPLK 199
Score = 60 (26.2 bits), Expect = 8.7e-07, Sum P(3) = 8.7e-07
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 132 NDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCA 188
++ K E+ +IL + +IGK G +K++ +T T I ++ +D S P +
Sbjct: 188 DETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTIT 247
Query: 189 MEFDNFVLISGESEAVKK 206
++ + E E +KK
Sbjct: 248 VKGTVEACANAEIEIMKK 265
Score = 46 (21.3 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
++ G+VIGK G + ++ ++ A +
Sbjct: 396 SSTAGRVIGKGGKTVNELQNLTSAEV 421
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 89 (36.4 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLI 617
A+ G VIGK G N+ +I + SGA +E+ + D R+ I G P+Q A +LI
Sbjct: 363 ADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEVARHLI 421
Score = 88 (36.0 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDIK 367
P +K G VIGKGG IKSI Q SGA +++ + N D + T +P I+
Sbjct: 362 PADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIE 415
Score = 87 (35.7 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 41/170 (24%), Positives = 66/170 (38%)
Query: 296 VSGLVGASQSEELVI--RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDE- 352
V +GA + VI P +G +IG+GG I I+ SG +I + E
Sbjct: 64 VGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Query: 353 -CVITVTAIESPDDIKSMAVEAVLLLQTKI---NDEDDDTVTIRLLVXXXXXXXXXXXXX 408
CV+T T ES + K + + V + ND D ++ LL+
Sbjct: 124 PCVLTGTP-ESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQELLIPASKVGLVIGKGG 182
Query: 409 XXXNEIRKRTKAD-VRISKGDKPKCADANDELXXXXXXXXXXRDALVQII 457
++++RT V I G P AD + R+ +++II
Sbjct: 183 ETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMVLEII 232
Score = 83 (34.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 35/158 (22%), Positives = 63/158 (39%)
Query: 29 DEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVD--PFPGAKDRVVTI 86
D GN S I +L P +G VIGK G+ I +++ T ++ ++ P P D+ + I
Sbjct: 157 DIDGN--STIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRI 214
Query: 87 YSHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDND-KKRKEKEECQIL 145
+ A++ +L++ +D R ++
Sbjct: 215 ---------------TGDPFKVQQAREMVLEIIREKDQADFRGVRSDFTSRAGGGSIEVS 259
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
VP +IG+ G IK++++ T I+ P D P
Sbjct: 260 VPRFVVGIVIGRNGEMIKKIQNGTGVRIQFKPDDGISP 297
Score = 76 (31.8 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
++L+P+S+ +IGK G TIK+L+ RT +K V +D PT + D + I+G+
Sbjct: 166 ELLIPASKVGLVIGKGGETIKQLQE--RTGVKMVMIQDGPLPTGA-----DKPLRITGDP 218
Query: 202 EAVKKA 207
V++A
Sbjct: 219 FKVQQA 224
Score = 68 (29.0 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
VG VIG+ G + I+ +G I+ +R A + G P++ + A +I I+
Sbjct: 265 VGIVIGRNGEMIKKIQNGTGVRIQFKPDDGISPERAAQVMGPPDRCQHAARIINELIL 322
Score = 67 (28.6 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 44 PDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
PD ++G +IG+ G+ I+ I+ E+ ++++ G +R
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Score = 60 (26.2 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAM 189
VP IIG+ G I R+++++ I++ + + P C +
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVL 127
Score = 55 (24.4 bits), Expect = 2.0e-08, Sum P(4) = 2.0e-08
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P +G VIG+ G IK I+ +G +I
Sbjct: 256 IEVSVPRFVVGIVIGRNGEMIKKIQNGTGVRI 287
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 103 (41.3 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK GA IK+L SIK+ P A P S + V+I
Sbjct: 325 EQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAP--AEGPDVS-----ERMVII 377
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F+P+E++ LE +R
Sbjct: 378 TGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIR 414
Score = 96 (38.9 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 301 GASQSEEL--VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
G+SQ+ ++ +R+L P +G +IGK G TIK+I + + +++D+ K+N VT
Sbjct: 84 GSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIH-RKENSGAAEKPVT 142
Query: 359 AIESPDDIKSMAVEAVLLLQTKINDE 384
+P+ S A +L + K DE
Sbjct: 143 IHATPEGT-SEACRMILEIMQKEADE 167
Score = 86 (35.3 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAAENLI 617
AVG +IGK G+++ + + +GA+I+++ ++ +R+ +I+G PE + A+ I
Sbjct: 337 AVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 391
Score = 86 (35.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 29/140 (20%), Positives = 60/140 (42%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD-NRDECVITVTAIE 361
S E+ ++ + P +G +IGK G IK + + +GA I + + + E ++ +T
Sbjct: 322 SYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG-- 379
Query: 362 SPD-DIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
P+ K+ + L + N +++ + + V NE++ T
Sbjct: 380 PPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTS 439
Query: 420 ADVRISKGDKPKCADANDEL 439
A+V + + P D N+E+
Sbjct: 440 AEVIVPRDQTP---DENEEV 456
Score = 85 (35.0 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
RIL P +G++IGK G I +I ++T++RV + GA ++ VTI++
Sbjct: 96 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHA 145
Score = 83 (34.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
K + K E I VPSS + +IGK G T+ L++ T + + P+D
Sbjct: 404 KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRD 447
Score = 78 (32.5 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
E DE E + +IL +G++G +IGK G+ + I ET ++ +
Sbjct: 164 EADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITI 209
Score = 77 (32.2 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L +GR+IGK G +K I +G +I + +D
Sbjct: 171 AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 214
Score = 73 (30.8 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+ILVP+ IIGK G TIK + +T++ + + K+ +S A E V I E
Sbjct: 96 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE-----NSGAAEKP--VTIHATPE 148
Query: 203 AVKKALFAISAIMYKFSPR----EDIPLE 227
+A I IM K + E+IPL+
Sbjct: 149 GTSEACRMILEIMQKEADETKLAEEIPLK 177
Score = 46 (21.3 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
++ G+VIGK G + ++ ++ A +
Sbjct: 417 SSTAGRVIGKGGKTVNELQNLTSAEV 442
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 103 (41.3 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK GA IK+L SIK+ P A P S + V+I
Sbjct: 347 EQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAP--AEGPDVS-----ERMVII 399
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F+P+E++ LE +R
Sbjct: 400 TGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIR 436
Score = 96 (38.9 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 301 GASQSEEL--VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
G+SQ+ ++ +R+L P +G +IGK G TIK+I + + +++D+ K+N VT
Sbjct: 106 GSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIH-RKENSGAAEKPVT 164
Query: 359 AIESPDDIKSMAVEAVLLLQTKINDE 384
+P+ S A +L + K DE
Sbjct: 165 IHATPEGT-SEACRMILEIMQKEADE 189
Score = 86 (35.3 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAAENLI 617
AVG +IGK G+++ + + +GA+I+++ ++ +R+ +I+G PE + A+ I
Sbjct: 359 AVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 413
Score = 86 (35.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 29/140 (20%), Positives = 60/140 (42%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD-NRDECVITVTAIE 361
S E+ ++ + P +G +IGK G IK + + +GA I + + + E ++ +T
Sbjct: 344 SYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG-- 401
Query: 362 SPD-DIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
P+ K+ + L + N +++ + + V NE++ T
Sbjct: 402 PPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTS 461
Query: 420 ADVRISKGDKPKCADANDEL 439
A+V + + P D N+E+
Sbjct: 462 AEVIVPRDQTP---DENEEV 478
Score = 85 (35.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
RIL P +G++IGK G I +I ++T++RV + GA ++ VTI++
Sbjct: 118 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHA 167
Score = 83 (34.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
K + K E I VPSS + +IGK G T+ L++ T + + P+D
Sbjct: 426 KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRD 469
Score = 78 (32.5 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
E DE E + +IL +G++G +IGK G+ + I ET ++ +
Sbjct: 186 EADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITI 231
Score = 77 (32.2 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L +GR+IGK G +K I +G +I + +D
Sbjct: 193 AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 236
Score = 73 (30.8 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+ILVP+ IIGK G TIK + +T++ + + K+ +S A E V I E
Sbjct: 118 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE-----NSGAAEKP--VTIHATPE 170
Query: 203 AVKKALFAISAIMYKFSPR----EDIPLE 227
+A I IM K + E+IPL+
Sbjct: 171 GTSEACRMILEIMQKEADETKLAEEIPLK 199
Score = 46 (21.3 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
++ G+VIGK G + ++ ++ A +
Sbjct: 439 SSTAGRVIGKGGKTVNELQNLTSAEV 464
>WB|WBGene00007534 [details] [associations]
symbol:C12D8.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0016246
GO:GO:0003723 EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 92 (37.4 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 39/110 (35%), Positives = 48/110 (43%)
Query: 253 PNADPILPSRSVPSILGAARVPDLQGYADTGN-TWPVYSTGLSLVSG--LVGASQSEEL- 308
P+ DP P R I+G D Q Y T T V + + G + GA S E
Sbjct: 286 PDDDPSTPERCAV-IMGTR---D-QIYRATERITELVKKSTMQQGGGGNVAGAMVSNEAS 340
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITV 357
+ P K G VIGKGG TIK I SGA ++ D N DE V +
Sbjct: 341 TFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPTGNADEKVFVI 390
Score = 90 (36.7 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAM 189
+++VP S IIGK G TIKRL +T T I+ P D CA+
Sbjct: 252 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAV 298
Score = 76 (31.8 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 291 TGLSL--VSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDT 346
+GL + G GAS E+V+ P + +G +IGK G TIK + +G +I DD
Sbjct: 234 SGLQMHHAGGGGGASARGEVVV----PRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDD 289
Query: 347 KDNRDECVI 355
+ C +
Sbjct: 290 PSTPERCAV 298
Score = 74 (31.1 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPEQ-KRAAENLIQ 618
++VG +IGK G + + +G I+ D S +R A+I GT +Q RA E + +
Sbjct: 258 SSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRDQIYRATERITE 315
Score = 73 (30.8 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDNRDE 352
+ I + P N+ G +IGK G TI+ +++ SG + I V D + D+
Sbjct: 154 QTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQ 200
Score = 70 (29.7 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPEQKRAAENLIQ 618
G VIGK G + I SGA E+S D + ++V +I G A++LI+
Sbjct: 352 GLVIGKGGETIKQINSESGAHCELSRDPTGNADEKVFVIKGGKRAIEHAKHLIR 405
Score = 68 (29.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 33 NEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
+ E+V + P+ +G VIG+ G I I+ + RV++ D P + R+VT+
Sbjct: 66 DNEAVNEKYPIPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTL 120
Score = 59 (25.8 bits), Expect = 0.00093, Sum P(3) = 0.00093
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
+P S +IG+ G+ I+ +++K ++++P DA +P+ M V + G V+
Sbjct: 76 IPESAVGIVIGRGGSEIQGIQAKAGCRVQMSP-DA-DPSSGVRM-----VTLEGSRSNVE 128
Query: 206 KALFAISAIMYKF-SPR 221
A I+ ++ + +PR
Sbjct: 129 TAKHLINEVVARSQNPR 145
Score = 57 (25.1 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 144 ILVPSSQSANIIGKAGATIKRLRSKT 169
I +P ++ IIGK+G TI++L+ K+
Sbjct: 159 IAIPPNRCGLIIGKSGDTIRQLQEKS 184
Score = 51 (23.0 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 41 ILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
I P G +IGKSG I +++++ ++ +V D+
Sbjct: 159 IAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQ 200
>UNIPROTKB|Q17936 [details] [associations]
symbol:C12D8.1 "Protein C12D8.1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0016246 GO:GO:0003723
EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 92 (37.4 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 39/110 (35%), Positives = 48/110 (43%)
Query: 253 PNADPILPSRSVPSILGAARVPDLQGYADTGN-TWPVYSTGLSLVSG--LVGASQSEEL- 308
P+ DP P R I+G D Q Y T T V + + G + GA S E
Sbjct: 286 PDDDPSTPERCAV-IMGTR---D-QIYRATERITELVKKSTMQQGGGGNVAGAMVSNEAS 340
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITV 357
+ P K G VIGKGG TIK I SGA ++ D N DE V +
Sbjct: 341 TFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPTGNADEKVFVI 390
Score = 90 (36.7 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAM 189
+++VP S IIGK G TIKRL +T T I+ P D CA+
Sbjct: 252 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAV 298
Score = 76 (31.8 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 291 TGLSL--VSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDT 346
+GL + G GAS E+V+ P + +G +IGK G TIK + +G +I DD
Sbjct: 234 SGLQMHHAGGGGGASARGEVVV----PRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDD 289
Query: 347 KDNRDECVI 355
+ C +
Sbjct: 290 PSTPERCAV 298
Score = 74 (31.1 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPEQ-KRAAENLIQ 618
++VG +IGK G + + +G I+ D S +R A+I GT +Q RA E + +
Sbjct: 258 SSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRDQIYRATERITE 315
Score = 73 (30.8 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDNRDE 352
+ I + P N+ G +IGK G TI+ +++ SG + I V D + D+
Sbjct: 154 QTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQ 200
Score = 70 (29.7 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPEQKRAAENLIQ 618
G VIGK G + I SGA E+S D + ++V +I G A++LI+
Sbjct: 352 GLVIGKGGETIKQINSESGAHCELSRDPTGNADEKVFVIKGGKRAIEHAKHLIR 405
Score = 68 (29.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 33 NEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
+ E+V + P+ +G VIG+ G I I+ + RV++ D P + R+VT+
Sbjct: 66 DNEAVNEKYPIPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTL 120
Score = 59 (25.8 bits), Expect = 0.00093, Sum P(3) = 0.00093
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
+P S +IG+ G+ I+ +++K ++++P DA +P+ M V + G V+
Sbjct: 76 IPESAVGIVIGRGGSEIQGIQAKAGCRVQMSP-DA-DPSSGVRM-----VTLEGSRSNVE 128
Query: 206 KALFAISAIMYKF-SPR 221
A I+ ++ + +PR
Sbjct: 129 TAKHLINEVVARSQNPR 145
Score = 57 (25.1 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 144 ILVPSSQSANIIGKAGATIKRLRSKT 169
I +P ++ IIGK+G TI++L+ K+
Sbjct: 159 IAIPPNRCGLIIGKSGDTIRQLQEKS 184
Score = 51 (23.0 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 41 ILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
I P G +IGKSG I +++++ ++ +V D+
Sbjct: 159 IAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQ 200
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 103 (41.3 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK GA IK+L SIK+ P A P S + V+I
Sbjct: 351 EQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAP--AEGPDVS-----ERMVII 403
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F+P+E++ LE +R
Sbjct: 404 TGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIR 440
Score = 96 (38.9 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 301 GASQSEEL--VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
G+SQ+ ++ +R+L P +G +IGK G TIK+I + + +++D+ K+N VT
Sbjct: 110 GSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIH-RKENSGAAEKPVT 168
Query: 359 AIESPDDIKSMAVEAVLLLQTKINDE 384
+P+ S A +L + K DE
Sbjct: 169 IHATPEGT-SEACRMILEIMQKEADE 193
Score = 86 (35.3 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAAENLI 617
AVG +IGK G+++ + + +GA+I+++ ++ +R+ +I+G PE + A+ I
Sbjct: 363 AVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 417
Score = 86 (35.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 29/140 (20%), Positives = 60/140 (42%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD-NRDECVITVTAIE 361
S E+ ++ + P +G +IGK G IK + + +GA I + + + E ++ +T
Sbjct: 348 SYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG-- 405
Query: 362 SPD-DIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
P+ K+ + L + N +++ + + V NE++ T
Sbjct: 406 PPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTS 465
Query: 420 ADVRISKGDKPKCADANDEL 439
A+V + + P D N+E+
Sbjct: 466 AEVIVPRDQTP---DENEEV 482
Score = 85 (35.0 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
RIL P +G++IGK G I +I ++T++RV + GA ++ VTI++
Sbjct: 122 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHA 171
Score = 83 (34.3 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
K + K E I VPSS + +IGK G T+ L++ T + + P+D
Sbjct: 430 KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRD 473
Score = 78 (32.5 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
E DE E + +IL +G++G +IGK G+ + I ET ++ +
Sbjct: 190 EADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITI 235
Score = 77 (32.2 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L +GR+IGK G +K I +G +I + +D
Sbjct: 197 AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 240
Score = 73 (30.8 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+ILVP+ IIGK G TIK + +T++ + + K+ +S A E V I E
Sbjct: 122 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE-----NSGAAEKP--VTIHATPE 174
Query: 203 AVKKALFAISAIMYKFSPR----EDIPLE 227
+A I IM K + E+IPL+
Sbjct: 175 GTSEACRMILEIMQKEADETKLAEEIPLK 203
Score = 46 (21.3 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
++ G+VIGK G + ++ ++ A +
Sbjct: 443 SSTAGRVIGKGGKTVNELQNLTSAEV 468
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 103 (41.3 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK GA IK+L SIK+ P A P S + V+I
Sbjct: 358 EQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAP--AEGPDVS-----ERMVII 410
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F+P+E++ LE +R
Sbjct: 411 TGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIR 447
Score = 96 (38.9 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 301 GASQSEEL--VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
G+SQ+ ++ +R+L P +G +IGK G TIK+I + + +++D+ K+N VT
Sbjct: 117 GSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIH-RKENSGAAEKPVT 175
Query: 359 AIESPDDIKSMAVEAVLLLQTKINDE 384
+P+ S A +L + K DE
Sbjct: 176 IHATPEGT-SEACRMILEIMQKEADE 200
Score = 86 (35.3 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAAENLI 617
AVG +IGK G+++ + + +GA+I+++ ++ +R+ +I+G PE + A+ I
Sbjct: 370 AVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 424
Score = 86 (35.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 29/140 (20%), Positives = 60/140 (42%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD-NRDECVITVTAIE 361
S E+ ++ + P +G +IGK G IK + + +GA I + + + E ++ +T
Sbjct: 355 SYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG-- 412
Query: 362 SPD-DIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
P+ K+ + L + N +++ + + V NE++ T
Sbjct: 413 PPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTS 472
Query: 420 ADVRISKGDKPKCADANDEL 439
A+V + + P D N+E+
Sbjct: 473 AEVIVPRDQTP---DENEEV 489
Score = 85 (35.0 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
RIL P +G++IGK G I +I ++T++RV + GA ++ VTI++
Sbjct: 129 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHA 178
Score = 83 (34.3 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
K + K E I VPSS + +IGK G T+ L++ T + + P+D
Sbjct: 437 KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRD 480
Score = 78 (32.5 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
E DE E + +IL +G++G +IGK G+ + I ET ++ +
Sbjct: 197 EADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITI 242
Score = 77 (32.2 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L +GR+IGK G +K I +G +I + +D
Sbjct: 204 AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 247
Score = 73 (30.8 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+ILVP+ IIGK G TIK + +T++ + + K+ +S A E V I E
Sbjct: 129 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE-----NSGAAEKP--VTIHATPE 181
Query: 203 AVKKALFAISAIMYKFSPR----EDIPLE 227
+A I IM K + E+IPL+
Sbjct: 182 GTSEACRMILEIMQKEADETKLAEEIPLK 210
Score = 46 (21.3 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
++ G+VIGK G + ++ ++ A +
Sbjct: 450 SSTAGRVIGKGGKTVNELQNLTSAEV 475
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 103 (41.3 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK GA IK+L SIK+ P A P S + V+I
Sbjct: 383 EQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAP--AEGPDVS-----ERMVII 435
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F+P+E++ LE +R
Sbjct: 436 TGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIR 472
Score = 95 (38.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 301 GASQSEEL--VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
G SQ+ ++ +R+L P +G +IGK G TIK+I + + +++D+ K+N VT
Sbjct: 185 GTSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIH-RKENSGAAEKPVT 243
Query: 359 AIESPDDIKSMAVEAVLLLQTKINDE 384
+P+ S A +L + K DE
Sbjct: 244 IHATPEGT-SEACRMILEIMQKEADE 268
Score = 86 (35.3 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAAENLI 617
AVG +IGK G+++ + + +GA+I+++ ++ +R+ +I+G PE + A+ I
Sbjct: 395 AVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 449
Score = 86 (35.3 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 29/140 (20%), Positives = 60/140 (42%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD-NRDECVITVTAIE 361
S E+ ++ + P +G +IGK G IK + + +GA I + + + E ++ +T
Sbjct: 380 SYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG-- 437
Query: 362 SPD-DIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
P+ K+ + L + N +++ + + V NE++ T
Sbjct: 438 PPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTS 497
Query: 420 ADVRISKGDKPKCADANDEL 439
A+V + + P D N+E+
Sbjct: 498 AEVIVPRDQTP---DENEEV 514
Score = 85 (35.0 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
RIL P +G++IGK G I +I ++T++RV + GA ++ VTI++
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHA 246
Score = 83 (34.3 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
K + K E I VPSS + +IGK G T+ L++ T + + P+D
Sbjct: 462 KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRD 505
Score = 78 (32.5 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
E DE E + +IL +G++G +IGK G+ + I ET ++ +
Sbjct: 265 EADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITI 310
Score = 77 (32.2 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L +GR+IGK G +K I +G +I + +D
Sbjct: 272 AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 315
Score = 73 (30.8 bits), Expect = 4.8e-07, Sum P(3) = 4.8e-07
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+ILVP+ IIGK G TIK + +T++ + + K+ +S A E V I E
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE-----NSGAAEKP--VTIHATPE 249
Query: 203 AVKKALFAISAIMYKFSPR----EDIPLE 227
+A I IM K + E+IPL+
Sbjct: 250 GTSEACRMILEIMQKEADETKLAEEIPLK 278
Score = 63 (27.2 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 132 NDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCA 188
++ K E+ +IL + +IGK G +K++ +T T I ++ +D S P +
Sbjct: 267 DETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTIT 326
Query: 189 MEFDNFVLISGESEAVKK 206
++ S E E +KK
Sbjct: 327 VKGTVEACASAEIEIMKK 344
Score = 46 (21.3 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
++ G+VIGK G + ++ ++ A +
Sbjct: 475 SSTAGRVIGKGGKTVNELQNLTSAEV 500
>UNIPROTKB|G3V829 [details] [associations]
symbol:Fubp3 "RCG45587" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 EMBL:CH474001
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:AC108321 Ensembl:ENSRNOT00000021871 Uniprot:G3V829
Length = 569
Score = 89 (36.4 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLI 617
A+ G VIGK G N+ +I + SGA +E+ + D R+ I G P+Q A +LI
Sbjct: 363 ADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEVARHLI 421
Score = 88 (36.0 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDIK 367
P +K G VIGKGG IKSI Q SGA +++ + N D + T +P I+
Sbjct: 362 PADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIE 415
Score = 87 (35.7 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 41/170 (24%), Positives = 66/170 (38%)
Query: 296 VSGLVGASQSEELVI--RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDE- 352
V +GA + VI P +G +IG+GG I I+ SG +I + E
Sbjct: 64 VGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Query: 353 -CVITVTAIESPDDIKSMAVEAVLLLQTKI---NDEDDDTVTIRLLVXXXXXXXXXXXXX 408
CV+T T ES + K + + V + ND D ++ LL+
Sbjct: 124 PCVLTGTP-ESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQELLIPASKVGLVIGKGG 182
Query: 409 XXXNEIRKRTKAD-VRISKGDKPKCADANDELXXXXXXXXXXRDALVQII 457
++++RT V I G P AD + R+ +++II
Sbjct: 183 ETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMVLEII 232
Score = 79 (32.9 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 34/158 (21%), Positives = 62/158 (39%)
Query: 29 DEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVD--PFPGAKDRVVTI 86
D GN S I +L P +G VIGK G+ I +++ T ++ ++ P P D+ + I
Sbjct: 157 DIDGN--STIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRI 214
Query: 87 YSHXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDND-KKRKEKEECQIL 145
+ A++ +L++ +D R ++
Sbjct: 215 ---------------TGDPFKVQQAREMVLEIIREKDQADFRGVRSDFTSRAGGGSIEVS 259
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
VP +IG+ G IK++++ I+ P D P
Sbjct: 260 VPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP 297
Score = 76 (31.8 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
++L+P+S+ +IGK G TIK+L+ RT +K V +D PT + D + I+G+
Sbjct: 166 ELLIPASKVGLVIGKGGETIKQLQE--RTGVKMVMIQDGPLPTGA-----DKPLRITGDP 218
Query: 202 EAVKKA 207
V++A
Sbjct: 219 FKVQQA 224
Score = 69 (29.3 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
VG VIG+ G + I+ +G I+ +R A + G P++ + A +I I+
Sbjct: 265 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAARIINELIL 322
Score = 67 (28.6 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 44 PDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
PD ++G +IG+ G+ I+ I+ E+ ++++ G +R
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Score = 53 (23.7 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P +G VIG+ G IK I+ +G +I
Sbjct: 256 IEVSVPRFVVGIVIGRNGEMIKKIQNDAGVRI 287
>FB|FBgn0039920 [details] [associations]
symbol:CG11360 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR001841 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50089
SMART:SM00184 SMART:SM00322 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
EMBL:AE014135 GO:GO:0000381 KO:K15686 GeneTree:ENSGT00390000018714
EMBL:BT132709 RefSeq:NP_651934.2 UniGene:Dm.24122 SMR:Q9V4F3
EnsemblMetazoa:FBtr0089091 EnsemblMetazoa:FBtr0310539
EnsemblMetazoa:FBtr0310540 EnsemblMetazoa:FBtr0310541 GeneID:43810
KEGG:dme:Dmel_CG11360 UCSC:CG11360-RA FlyBase:FBgn0039920
InParanoid:Q9V4F3 OMA:ATIKHIQ OrthoDB:EOG4J3TZX GenomeRNAi:43810
NextBio:835995 Uniprot:Q9V4F3
Length = 628
Score = 107 (42.7 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 36/90 (40%), Positives = 45/90 (50%)
Query: 131 DNDKKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAM 189
D KK + EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 115 DRSKKSQNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEPV----- 167
Query: 190 EFDNFVLISGESEAVKKALFAISAIMYKFS 219
FV ++G E V KA I + FS
Sbjct: 168 ----FV-VTGRKEDVNKAKREILSAADHFS 192
Score = 100 (40.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 36/130 (27%), Positives = 58/130 (44%)
Query: 266 SILGAARVP--DLQGYADTGNTWPVYSTGLSLVSGLVGAS-QSEELVIRVLCPFNKIGRV 322
S++ A+R P D Q G+T S+G V + G ++ I+V P+ +G V
Sbjct: 192 SLIRASRKPVSDSQNNGMVGSTT---SSGGGAVPRMSGPPCMPGQVTIQVRVPYRVVGLV 248
Query: 323 IGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLLLQTKIN 382
+G G TIK I+Q + I T E + VT + D +EA + L+T
Sbjct: 249 VGPKGATIKHIQQETQTYIV---TPSREKEPIFEVTGLPDNVDTARKQIEAHIALRTGSG 305
Query: 383 DEDDDTVTIR 392
D +T++
Sbjct: 306 SGSGDAITMQ 315
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 124 (48.7 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 48/180 (26%), Positives = 80/180 (44%)
Query: 33 NEESVIY-RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRVVTIYS 88
+EE + ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV I
Sbjct: 58 HEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQG 117
Query: 89 HXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDNDKKRKEKEECQILVPS 148
+AQ K + D+ ++ K ++VP+
Sbjct: 118 TVEALNNVHDFIAEKVREMPQSAQ----KTEPVSILQPQTTVNPDRVKQAK----LVVPN 169
Query: 149 SQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKAL 208
S + IIGK GAT+K + ++ ++++ K P E V ISGE E +KA+
Sbjct: 170 STAGLIIGKGGATVKAVMEQSGAWVQLSQK----PDGINLQE--RVVTISGEPEQNRKAV 223
Score = 97 (39.2 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD---NRDE- 352
S +VG + E ++VL P G +IGKGG TI +++ +GA I + +KD E
Sbjct: 52 SDIVGFHEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTER 111
Query: 353 -CVITVTAIESPDDIKSMAVEAV 374
C+I T +E+ +++ E V
Sbjct: 112 VCLIQGT-VEALNNVHDFIAEKV 133
Score = 88 (36.0 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQKRAAENLI 617
+ G +IGK G+ + + + SGA +++S +RV ISG PEQ R A +I
Sbjct: 170 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTISGEPEQNRKAVEII 226
Score = 78 (32.5 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 280 ADTGNTWPVYSTGLSLV-SGLVGASQSEEL---VIRVLCPFNKIGRVIGKGGGTIKSIRQ 335
A TG T S LV S L+ + E V+ + P N +G ++GKGG T+ ++
Sbjct: 385 AATGATNGYLSAASPLVASSLLATEKLAEGAKDVVEIAVPENLVGAILGKGGKTLVEYQE 444
Query: 336 ASGAQIDV 343
+GA+I +
Sbjct: 445 LTGARIQI 452
Score = 67 (28.6 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTP 607
N VG ++GK G L ++++GA I++S +R I+G+P
Sbjct: 426 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGSP 473
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 103 (41.3 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK GA IK+L SIK+ P A P S + V+I
Sbjct: 426 EQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAP--AEGPDVS-----ERMVII 478
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F+P+E++ LE +R
Sbjct: 479 TGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIR 515
Score = 95 (38.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 301 GASQSEEL--VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
G SQ+ ++ +R+L P +G +IGK G TIK+I + + +++D+ K+N VT
Sbjct: 185 GTSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIH-RKENSGAAEKPVT 243
Query: 359 AIESPDDIKSMAVEAVLLLQTKINDE 384
+P+ S A +L + K DE
Sbjct: 244 IHATPEGT-SEACRMILEIMQKEADE 268
Score = 86 (35.3 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAAENLI 617
AVG +IGK G+++ + + +GA+I+++ ++ +R+ +I+G PE + A+ I
Sbjct: 438 AVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 492
Score = 86 (35.3 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 29/140 (20%), Positives = 60/140 (42%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD-NRDECVITVTAIE 361
S E+ ++ + P +G +IGK G IK + + +GA I + + + E ++ +T
Sbjct: 423 SYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG-- 480
Query: 362 SPD-DIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
P+ K+ + L + N +++ + + V NE++ T
Sbjct: 481 PPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTS 540
Query: 420 ADVRISKGDKPKCADANDEL 439
A+V + + P D N+E+
Sbjct: 541 AEVIVPRDQTP---DENEEV 557
Score = 85 (35.0 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
RIL P +G++IGK G I +I ++T++RV + GA ++ VTI++
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHA 246
Score = 83 (34.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
K + K E I VPSS + +IGK G T+ L++ T + + P+D
Sbjct: 505 KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRD 548
Score = 78 (32.5 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
E DE E + +IL +G++G +IGK G+ + I ET ++ +
Sbjct: 265 EADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITI 310
Score = 77 (32.2 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L +GR+IGK G +K I +G +I + +D
Sbjct: 272 AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 315
Score = 73 (30.8 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+ILVP+ IIGK G TIK + +T++ + + K+ +S A E V I E
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE-----NSGAAEKP--VTIHATPE 249
Query: 203 AVKKALFAISAIMYKFSPR----EDIPLE 227
+A I IM K + E+IPL+
Sbjct: 250 GTSEACRMILEIMQKEADETKLAEEIPLK 278
Score = 63 (27.2 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 132 NDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCA 188
++ K E+ +IL + +IGK G +K++ +T T I ++ +D S P +
Sbjct: 267 DETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTIT 326
Query: 189 MEFDNFVLISGESEAVKK 206
++ S E E +KK
Sbjct: 327 VKGTVEACASAEIEIMKK 344
Score = 46 (21.3 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
++ G+VIGK G + ++ ++ A +
Sbjct: 518 SSTAGRVIGKGGKTVNELQNLTSAEV 543
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 103 (41.3 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK GA IK+L SIK+ P A P S + V+I
Sbjct: 426 EQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAP--AEGPDVS-----ERMVII 478
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F+P+E++ LE +R
Sbjct: 479 TGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIR 515
Score = 96 (38.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 301 GASQSEEL--VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
G+SQ+ ++ +R+L P +G +IGK G TIK+I + + +++D+ K+N VT
Sbjct: 185 GSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIH-RKENSGAAEKPVT 243
Query: 359 AIESPDDIKSMAVEAVLLLQTKINDE 384
+P+ S A +L + K DE
Sbjct: 244 IHATPEGT-SEACRMILEIMQKEADE 268
Score = 86 (35.3 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAAENLI 617
AVG +IGK G+++ + + +GA+I+++ ++ +R+ +I+G PE + A+ I
Sbjct: 438 AVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 492
Score = 86 (35.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 29/140 (20%), Positives = 60/140 (42%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD-NRDECVITVTAIE 361
S E+ ++ + P +G +IGK G IK + + +GA I + + + E ++ +T
Sbjct: 423 SYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG-- 480
Query: 362 SPD-DIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
P+ K+ + L + N +++ + + V NE++ T
Sbjct: 481 PPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTS 540
Query: 420 ADVRISKGDKPKCADANDEL 439
A+V + + P D N+E+
Sbjct: 541 AEVIVPRDQTP---DENEEV 557
Score = 85 (35.0 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
RIL P +G++IGK G I +I ++T++RV + GA ++ VTI++
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHA 246
Score = 83 (34.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
K + K E I VPSS + +IGK G T+ L++ T + + P+D
Sbjct: 505 KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRD 548
Score = 78 (32.5 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
E DE E + +IL +G++G +IGK G+ + I ET ++ +
Sbjct: 265 EADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITI 310
Score = 77 (32.2 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L +GR+IGK G +K I +G +I + +D
Sbjct: 272 AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 315
Score = 73 (30.8 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+ILVP+ IIGK G TIK + +T++ + + K+ +S A E V I E
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE-----NSGAAEKP--VTIHATPE 249
Query: 203 AVKKALFAISAIMYKFSPR----EDIPLE 227
+A I IM K + E+IPL+
Sbjct: 250 GTSEACRMILEIMQKEADETKLAEEIPLK 278
Score = 46 (21.3 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
++ G+VIGK G + ++ ++ A +
Sbjct: 518 SSTAGRVIGKGGKTVNELQNLTSAEV 543
>UNIPROTKB|Q8UVD9 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9031 "Gallus gallus" [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0005737 GO:GO:0003730
GO:GO:0008298 GO:GO:0051028 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 EMBL:AF461020 IPI:IPI00589044
RefSeq:NP_989608.1 UniGene:Gga.94 ProteinModelPortal:Q8UVD9
SMR:Q8UVD9 PRIDE:Q8UVD9 GeneID:374140 KEGG:gga:374140 CTD:8570
NextBio:20813655 Uniprot:Q8UVD9
Length = 769
Score = 90 (36.7 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
YR+ PDG++G +IG+ G+ IN I+Q++ +V++ G +R V++
Sbjct: 213 YRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSL 258
Score = 78 (32.5 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P K G VIGKGG TIK +++ +G + I + D N
Sbjct: 298 VQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMIFIQDGSQN 339
Score = 76 (31.8 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
++VG VIG++G + I+ +G I+ + +++A I G PE+ A +I +
Sbjct: 395 HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPERCEHAARIINDLLQ 454
Query: 623 A 623
+
Sbjct: 455 S 455
Score = 75 (31.5 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G VIG+ G N+ I + GA +E+S GD ++ +I G+P+Q A+ I+
Sbjct: 499 GLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEHAKQPIE 554
Score = 71 (30.1 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
P +K G VIG+GG +K+I Q GA +++
Sbjct: 494 PTHKCGLVIGRGGENVKAINQQRGAFVEI 522
Score = 69 (29.3 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTH 185
+I++P+ ++ +IGK G TIK+L+ R +K + +D S+ T+
Sbjct: 300 EIMIPAGKAGLVIGKGGETIKQLQE--RAGVKMIFIQDGSQNTN 341
Score = 65 (27.9 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I +++ + ++++P P S V ++G EAV+
Sbjct: 215 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERS--------VSLTGSPEAVQ 266
Query: 206 KALFAISAIM 215
KA + I+
Sbjct: 267 KAKLMLDDIV 276
Score = 56 (24.8 bits), Expect = 4.0e-08, Sum P(4) = 4.0e-08
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P + +G VIG+ G IK I+ +G +I
Sbjct: 388 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRI 419
Score = 48 (22.0 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
VP +IG++G IK++++ I+ D + P
Sbjct: 392 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGP 429
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 103 (41.3 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK GA IK+L SIK+ P A P S + V+I
Sbjct: 432 EQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAP--AEGPDVS-----ERMVII 484
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F+P+E++ LE +R
Sbjct: 485 TGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIR 521
Score = 95 (38.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 301 GASQSEEL--VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
G SQ+ ++ +R+L P +G +IGK G TIK+I + + +++D+ K+N VT
Sbjct: 191 GTSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIH-RKENSGAAEKPVT 249
Query: 359 AIESPDDIKSMAVEAVLLLQTKINDE 384
+P+ S A +L + K DE
Sbjct: 250 IHATPEGT-SEACRMILEIMQKEADE 274
Score = 86 (35.3 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAAENLI 617
AVG +IGK G+++ + + +GA+I+++ ++ +R+ +I+G PE + A+ I
Sbjct: 444 AVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI 498
Score = 86 (35.3 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 29/140 (20%), Positives = 60/140 (42%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD-NRDECVITVTAIE 361
S E+ ++ + P +G +IGK G IK + + +GA I + + + E ++ +T
Sbjct: 429 SYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG-- 486
Query: 362 SPD-DIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTK 419
P+ K+ + L + N +++ + + V NE++ T
Sbjct: 487 PPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTS 546
Query: 420 ADVRISKGDKPKCADANDEL 439
A+V + + P D N+E+
Sbjct: 547 AEVIVPRDQTP---DENEEV 563
Score = 85 (35.0 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
RIL P +G++IGK G I +I ++T++RV + GA ++ VTI++
Sbjct: 203 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHA 252
Score = 83 (34.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
K + K E I VPSS + +IGK G T+ L++ T + + P+D
Sbjct: 511 KEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRD 554
Score = 78 (32.5 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
E DE E + +IL +G++G +IGK G+ + I ET ++ +
Sbjct: 271 EADETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITI 316
Score = 77 (32.2 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L +GR+IGK G +K I +G +I + +D
Sbjct: 278 AEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQD 321
Score = 73 (30.8 bits), Expect = 6.5e-07, Sum P(3) = 6.5e-07
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+ILVP+ IIGK G TIK + +T++ + + K+ +S A E V I E
Sbjct: 203 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE-----NSGAAEKP--VTIHATPE 255
Query: 203 AVKKALFAISAIMYKFSPR----EDIPLE 227
+A I IM K + E+IPL+
Sbjct: 256 GTSEACRMILEIMQKEADETKLAEEIPLK 284
Score = 63 (27.2 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 132 NDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCA 188
++ K E+ +IL + +IGK G +K++ +T T I ++ +D S P +
Sbjct: 273 DETKLAEEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTIT 332
Query: 189 MEFDNFVLISGESEAVKK 206
++ S E E +KK
Sbjct: 333 VKGTVEACASAEIEIMKK 350
Score = 46 (21.3 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
++ G+VIGK G + ++ ++ A +
Sbjct: 524 SSTAGRVIGKGGKTVNELQNLTSAEV 549
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 153 (58.9 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 75/348 (21%), Positives = 141/348 (40%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSH 89
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL--- 61
Query: 90 XXXXXXXXXXXXXXXXXPLCAAQDAL-LKVHXXXXXXXXXXTDNDKKRKEKEECQILVPS 148
P A A + + T++ + +++VP+
Sbjct: 62 ---------------AGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPA 106
Query: 149 SQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKAL 208
SQ ++IGK G IK +R T ++V T + + I+G +++ + +
Sbjct: 107 SQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST-------ERAITIAGIPQSIIECV 159
Query: 209 FAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGG---LYPNADPIL---PSR 262
I +M + SP + + + + + G +P+ P + P
Sbjct: 160 KQICVVMLE-SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDL 218
Query: 263 SVP-----SILGAARVPD-----LQGYADTGNTWPVYSTGLSLVSGLVGASQ--SEELVI 310
P +I G +P L A + +P+ +GL ++Q S EL I
Sbjct: 219 EGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTI 278
Query: 311 RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
P + IG +IG+ G I IRQ SGAQI + + + + +T+T
Sbjct: 279 ----PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 322
Score = 106 (42.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 37/138 (26%), Positives = 65/138 (47%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G++ + L IR+L ++G +IGK G ++K +R+ SGA+I++ + N E +IT
Sbjct: 3 TGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAV------EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXX 410
+ + K+ A+ E + T VT+RL+V
Sbjct: 61 LAGPTNAI-FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 411 XNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 120 IKEIRESTGAQVQVA-GD 136
Score = 105 (42.0 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 151
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
P I + V++L++
Sbjct: 152 --PQSIIECVKQICVVMLES 169
Score = 78 (32.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++++ DR I+G+ A+ LI
Sbjct: 283 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 335
>MGI|MGI:1196294 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1196294 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625
InterPro:IPR015096 Pfam:PF09005 EMBL:BC014763 EMBL:AK029458
IPI:IPI00467635 IPI:IPI00874931 UniGene:Mm.278922 PDB:1X4M PDB:1X4N
PDBsum:1X4M PDBsum:1X4N ProteinModelPortal:Q91WJ8 SMR:Q91WJ8
IntAct:Q91WJ8 STRING:Q91WJ8 PhosphoSite:Q91WJ8
REPRODUCTION-2DPAGE:Q91WJ8 PaxDb:Q91WJ8 PRIDE:Q91WJ8
UCSC:uc008rsv.1 InParanoid:Q91WJ8 EvolutionaryTrace:Q91WJ8
CleanEx:MM_FUBP1 Genevestigator:Q91WJ8
GermOnline:ENSMUSG00000028034 Uniprot:Q91WJ8
Length = 651
Score = 91 (37.1 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 313 LCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD-NRDECVITVTAIESPDDI 366
+ P K G +IGKGG TIKSI Q SGA+I++ + N D + T +P I
Sbjct: 378 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQI 432
Score = 82 (33.9 bits), Expect = 5.5e-08, Sum P(4) = 5.5e-08
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G +IGK G + +I + SGA IE+ S D ++ I GTP+Q A LI+
Sbjct: 385 GLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQLIE 440
Score = 81 (33.6 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAE 614
AVG VIG+ G + I+ +G I+ + DR+A I+G P++ + AAE
Sbjct: 282 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAE 333
Score = 80 (33.2 bits), Expect = 5.5e-08, Sum P(4) = 5.5e-08
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
Y++ PDG++G +IG+ G+ I+ I+QE+ ++++ G +R
Sbjct: 101 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 142
Score = 77 (32.2 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P +K G VIGKGG TIK +++ +G + + + D N
Sbjct: 183 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN 224
Score = 74 (31.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I R++ ++ I++ P P SC +++G E+V+
Sbjct: 103 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSC--------MLTGTPESVQ 154
Query: 206 KALFAISAIMYKFSP 220
A + I+ K P
Sbjct: 155 SAKRLLDQIVEKGRP 169
Score = 71 (30.1 bits), Expect = 5.5e-08, Sum P(4) = 5.5e-08
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I++P+S++ +IGK G TIK+L+ R +K V +D + T + D + I+G+
Sbjct: 185 EIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGA-----DKPLRITGDP 237
Query: 202 EAVKKA 207
V++A
Sbjct: 238 YKVQQA 243
Score = 53 (23.7 bits), Expect = 5.5e-08, Sum P(4) = 5.5e-08
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I + + +T P D
Sbjct: 274 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITG---PPDRCQH 330
Query: 370 AVEAV 374
A E +
Sbjct: 331 AAEII 335
>UNIPROTKB|Q96AE4 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003700 GO:GO:0003723
GO:GO:0006366 GO:GO:0003697 GO:GO:0010628 EMBL:U05040 EMBL:AC096948
EMBL:BC017247 IPI:IPI00375441 IPI:IPI00853059 PIR:A53184
RefSeq:NP_003893.2 UniGene:Hs.567380 PDB:1J4W PDB:2KXH PDBsum:1J4W
PDBsum:2KXH ProteinModelPortal:Q96AE4 SMR:Q96AE4 DIP:DIP-47273N
IntAct:Q96AE4 MINT:MINT-1374324 STRING:Q96AE4 PhosphoSite:Q96AE4
DMDM:116241370 REPRODUCTION-2DPAGE:IPI00375441 PaxDb:Q96AE4
PRIDE:Q96AE4 DNASU:8880 Ensembl:ENST00000294623
Ensembl:ENST00000370768 GeneID:8880 KEGG:hsa:8880 UCSC:uc001dii.3
CTD:8880 GeneCards:GC01M078400 HGNC:HGNC:4004 HPA:HPA006149
MIM:603444 neXtProt:NX_Q96AE4 PharmGKB:PA28420 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
ChiTaRS:FUBP1 EvolutionaryTrace:Q96AE4 GenomeRNAi:8880
NextBio:33343 ArrayExpress:Q96AE4 Bgee:Q96AE4 CleanEx:HS_FUBP1
Genevestigator:Q96AE4 GermOnline:ENSG00000162613 InterPro:IPR015096
Pfam:PF09005 Uniprot:Q96AE4
Length = 644
Score = 92 (37.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 313 LCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDI 366
+ P K G +IGKGG TIKSI Q SGA+I++ + N D + T +P I
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQI 436
Score = 80 (33.2 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
Y++ PDG++G +IG+ G+ I+ I+QE+ ++++ G +R
Sbjct: 105 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 146
Score = 79 (32.9 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G +IGK G + +I + SGA IE+ + D ++ I GTP+Q A LI+
Sbjct: 389 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 444
Score = 77 (32.2 bits), Expect = 9.0e-07, Sum P(3) = 9.0e-07
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P +K G VIGKGG TIK +++ +G + + + D N
Sbjct: 187 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN 228
Score = 77 (32.2 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAE 614
AVG VIG+ G + I+ +G I+ + +R+A I+G P++ + AAE
Sbjct: 286 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAE 337
Score = 74 (31.1 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I R++ ++ I++ P P SC +++G E+V+
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSC--------MLTGTPESVQ 158
Query: 206 KALFAISAIMYKFSP 220
A + I+ K P
Sbjct: 159 SAKRLLDQIVEKGRP 173
Score = 71 (30.1 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I++P+S++ +IGK G TIK+L+ R +K V +D + T + D + I+G+
Sbjct: 189 EIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGA-----DKPLRITGDP 241
Query: 202 EAVKKA 207
V++A
Sbjct: 242 YKVQQA 247
Score = 56 (24.8 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I E + +T P D
Sbjct: 278 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITG---PPDRCQH 334
Query: 370 AVEAV 374
A E +
Sbjct: 335 AAEII 339
>UNIPROTKB|Q96I24 [details] [associations]
symbol:FUBP3 "Far upstream element-binding protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:U69127 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 EMBL:CH471090
GO:GO:0006351 GO:GO:0003723 EMBL:AL359092 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 EMBL:AK295155
EMBL:AL353695 EMBL:BC001325 EMBL:BC007874 EMBL:BC137338
EMBL:BC137340 IPI:IPI00063245 IPI:IPI00377261 RefSeq:NP_003925.1
UniGene:Hs.673029 UniGene:Hs.98751 ProteinModelPortal:Q96I24
SMR:Q96I24 DIP:DIP-50124N IntAct:Q96I24 STRING:Q96I24
PhosphoSite:Q96I24 DMDM:37078499 REPRODUCTION-2DPAGE:IPI00377261
PaxDb:Q96I24 PRIDE:Q96I24 DNASU:8939 Ensembl:ENST00000319725
Ensembl:ENST00000372376 GeneID:8939 KEGG:hsa:8939 UCSC:uc004bzr.1
UCSC:uc010mzd.1 CTD:8939 GeneCards:GC09P133454 HGNC:HGNC:4005
HPA:HPA047658 MIM:603536 neXtProt:NX_Q96I24 PharmGKB:PA28421
InParanoid:Q96I24 OMA:AAPHQNT OrthoDB:EOG4X97H1 PhylomeDB:Q96I24
GenomeRNAi:8939 NextBio:33614 ArrayExpress:Q96I24 Bgee:Q96I24
CleanEx:HS_FUBP3 Genevestigator:Q96I24 GermOnline:ENSG00000107164
Uniprot:Q96I24
Length = 572
Score = 92 (37.4 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 44/194 (22%), Positives = 71/194 (36%)
Query: 296 VSGLVGASQSEELVI--RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDE- 352
V +GA + VI P +G +IG+GG I I+ SG +I + E
Sbjct: 64 VGNQLGALVHQRTVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Query: 353 -CVITVTAIESPDDIKSMAVEAVLLLQTKI---NDEDDDTVTIRLLVXXXXXXXXXXXXX 408
CV+T T ES + K + + V + ND D ++ +L+
Sbjct: 124 PCVLTGTP-ESIEQAKRLLGQIVDRCRNGPGFHNDIDSNSTIQEILIPASKVGLVIGRGG 182
Query: 409 XXXNEIRKRTKAD-VRISKGDKPKCADANDELXXXXXXXXXXRDALVQIIXXXXXXXXXX 467
++++RT V I G P AD + R+ +++II
Sbjct: 183 ETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQQAREMVLEIIREKDQADFRG 242
Query: 468 XXGSRNPPVGADHI 481
G N +G I
Sbjct: 243 VRGDFNSRMGGGSI 256
Score = 87 (35.7 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 300 VGASQS-EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITV 357
VGA +E+ V P +K G VIGKGG IKSI Q SGA +++ + N D +
Sbjct: 348 VGAPGGVQEITYTV--PADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRF 405
Query: 358 TAIESPDDIK 367
T P I+
Sbjct: 406 TIRGVPQQIE 415
Score = 85 (35.0 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
A+ G VIGK G N+ +I + SGA +E+ + D R I G P+Q A LI
Sbjct: 363 ADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQLID 422
Query: 619 AFIMAT 624
+ T
Sbjct: 423 EKVGGT 428
Score = 79 (32.9 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 31/154 (20%), Positives = 59/154 (38%)
Query: 33 NEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVD--PFPGAKDRVVTIYSHX 90
+ S I IL P +G VIG+ G+ I +++ T ++ ++ P P D+ + I
Sbjct: 159 DSNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRI---- 214
Query: 91 XXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDND-KKRKEKEECQILVPSS 149
+ A++ +L++ D R ++ VP
Sbjct: 215 -----------TGDAFKVQQAREMVLEIIREKDQADFRGVRGDFNSRMGGGSIEVSVPRF 263
Query: 150 QSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
+IG+ G IK++++ I+ P D P
Sbjct: 264 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISP 297
Score = 77 (32.2 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+IL+P+S+ +IG+ G TIK+L+ RT +K V +D PT + D + I+G++
Sbjct: 166 EILIPASKVGLVIGRGGETIKQLQE--RTGVKMVMIQDGPLPTGA-----DKPLRITGDA 218
Query: 202 EAVKKA 207
V++A
Sbjct: 219 FKVQQA 224
Score = 74 (31.1 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
AVG VIG+ G + I+ +G I+ +R A + G P++ + A ++I I+
Sbjct: 264 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIISELIL 322
Score = 67 (28.6 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 44 PDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
PD ++G +IG+ G+ I+ I+ E+ ++++ G +R
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Score = 54 (24.1 bits), Expect = 5.6e-08, Sum P(4) = 5.6e-08
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P +G VIG+ G IK I+ +G +I
Sbjct: 256 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRI 287
>UNIPROTKB|E9PEB5 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 InterPro:IPR015096
Pfam:PF09005 IPI:IPI00644386 ProteinModelPortal:E9PEB5 SMR:E9PEB5
PRIDE:E9PEB5 Ensembl:ENST00000370767 ArrayExpress:E9PEB5
Bgee:E9PEB5 Uniprot:E9PEB5
Length = 655
Score = 92 (37.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 313 LCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDI 366
+ P K G +IGKGG TIKSI Q SGA+I++ + N D + T +P I
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQI 436
Score = 80 (33.2 bits), Expect = 6.0e-08, Sum P(4) = 6.0e-08
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
Y++ PDG++G +IG+ G+ I+ I+QE+ ++++ G +R
Sbjct: 105 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 146
Score = 79 (32.9 bits), Expect = 6.0e-08, Sum P(4) = 6.0e-08
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G +IGK G + +I + SGA IE+ + D ++ I GTP+Q A LI+
Sbjct: 389 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 444
Score = 77 (32.2 bits), Expect = 9.5e-07, Sum P(3) = 9.5e-07
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P +K G VIGKGG TIK +++ +G + + + D N
Sbjct: 187 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN 228
Score = 77 (32.2 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAE 614
AVG VIG+ G + I+ +G I+ + +R+A I+G P++ + AAE
Sbjct: 286 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAE 337
Score = 74 (31.1 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I R++ ++ I++ P P SC +++G E+V+
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSC--------MLTGTPESVQ 158
Query: 206 KALFAISAIMYKFSP 220
A + I+ K P
Sbjct: 159 SAKRLLDQIVEKGRP 173
Score = 71 (30.1 bits), Expect = 6.0e-08, Sum P(4) = 6.0e-08
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I++P+S++ +IGK G TIK+L+ R +K V +D + T + D + I+G+
Sbjct: 189 EIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGA-----DKPLRITGDP 241
Query: 202 EAVKKA 207
V++A
Sbjct: 242 YKVQQA 247
Score = 56 (24.8 bits), Expect = 6.0e-08, Sum P(4) = 6.0e-08
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I E + +T P D
Sbjct: 278 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITG---PPDRCQH 334
Query: 370 AVEAV 374
A E +
Sbjct: 335 AAEII 339
>UNIPROTKB|B4DT31 [details] [associations]
symbol:FUBP1 "cDNA FLJ53425, highly similar to Far upstream
element-binding protein 1" species:9606 "Homo sapiens" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 EMBL:AC096948 UniGene:Hs.567380
HGNC:HGNC:4004 HOGENOM:HOG000231552 HOVERGEN:HBG000625
ChiTaRS:FUBP1 InterPro:IPR015096 Pfam:PF09005 EMBL:AK300032
IPI:IPI00641948 SMR:B4DT31 STRING:B4DT31 Ensembl:ENST00000436586
UCSC:uc010orm.2 OMA:NGQEGDQ Uniprot:B4DT31
Length = 665
Score = 92 (37.4 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 313 LCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDI 366
+ P K G +IGKGG TIKSI Q SGA+I++ + N D + T +P I
Sbjct: 403 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQI 457
Score = 80 (33.2 bits), Expect = 6.4e-08, Sum P(4) = 6.4e-08
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
Y++ PDG++G +IG+ G+ I+ I+QE+ ++++ G +R
Sbjct: 126 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 167
Score = 79 (32.9 bits), Expect = 6.4e-08, Sum P(4) = 6.4e-08
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G +IGK G + +I + SGA IE+ + D ++ I GTP+Q A LI+
Sbjct: 410 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 465
Score = 77 (32.2 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P +K G VIGKGG TIK +++ +G + + + D N
Sbjct: 208 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN 249
Score = 77 (32.2 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAE 614
AVG VIG+ G + I+ +G I+ + +R+A I+G P++ + AAE
Sbjct: 307 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAE 358
Score = 74 (31.1 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I R++ ++ I++ P P SC +++G E+V+
Sbjct: 128 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSC--------MLTGTPESVQ 179
Query: 206 KALFAISAIMYKFSP 220
A + I+ K P
Sbjct: 180 SAKRLLDQIVEKGRP 194
Score = 71 (30.1 bits), Expect = 6.4e-08, Sum P(4) = 6.4e-08
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I++P+S++ +IGK G TIK+L+ R +K V +D + T + D + I+G+
Sbjct: 210 EIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGA-----DKPLRITGDP 262
Query: 202 EAVKKA 207
V++A
Sbjct: 263 YKVQQA 268
Score = 56 (24.8 bits), Expect = 6.4e-08, Sum P(4) = 6.4e-08
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I E + +T P D
Sbjct: 299 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITG---PPDRCQH 355
Query: 370 AVEAV 374
A E +
Sbjct: 356 AAEII 360
>UNIPROTKB|E1BX03 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AADN02012752
IPI:IPI00679838 Ensembl:ENSGALT00000014525 ArrayExpress:E1BX03
Uniprot:E1BX03
Length = 645
Score = 92 (37.4 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 313 LCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDI 366
+ P K G +IGKGG TIKSI Q SGA+I++ + N D + T +P I
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQI 436
Score = 81 (33.6 bits), Expect = 8.6e-08, Sum P(4) = 8.6e-08
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 2 GDSGKRYRSQRDNDRDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINS 61
GD + ND G NQ ++++ E Y++ PDG++G +IG+ G+ I+
Sbjct: 68 GDQPDAKKVAPQNDSFG-NQLPPMHQQQRSVMTEE--YKV--PDGMVGFIIGRGGEQISR 122
Query: 62 IRQETRARVKV 72
I+QE+ ++++
Sbjct: 123 IQQESGCKIQI 133
Score = 81 (33.6 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAE 614
AVG VIG+ G + I+ +G I+ + DR+A I+G P++ + AAE
Sbjct: 285 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAE 336
Score = 79 (32.9 bits), Expect = 8.6e-08, Sum P(4) = 8.6e-08
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G +IGK G + +I + SGA IE+ + D ++ I GTP+Q A LI+
Sbjct: 389 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQLIE 444
Score = 77 (32.2 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P +K G VIGKGG TIK +++ +G + + + D N
Sbjct: 186 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN 227
Score = 71 (30.1 bits), Expect = 8.6e-08, Sum P(4) = 8.6e-08
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I++P+S++ +IGK G TIK+L+ R +K V +D + T + D + I+G+
Sbjct: 188 EIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGA-----DKPLRITGDP 240
Query: 202 EAVKKA 207
V++A
Sbjct: 241 YKVQQA 246
Score = 64 (27.6 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPK-DASE-PTHSCAMEFDNFVLISGESEA 203
VP IIG+ G I R++ ++ I++ P D+ P SC +++G E+
Sbjct: 104 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPALDSGGLPERSC--------MLTGTPES 155
Query: 204 VKKALFAISAIMYKFSP 220
V+ A + I+ K P
Sbjct: 156 VQSAKRLLDQIVEKGRP 172
Score = 53 (23.7 bits), Expect = 8.6e-08, Sum P(4) = 8.6e-08
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I + + +T P D
Sbjct: 277 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITG---PPDRCQH 333
Query: 370 AVEAV 374
A E +
Sbjct: 334 AAEII 338
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 105 (42.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 151
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
P I + V++L++
Sbjct: 152 --PQSIIECVKQICVVMLES 169
Score = 79 (32.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Score = 76 (31.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP+SQ ++IGK G IK +R T ++V T + + I+G +
Sbjct: 101 RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNST-------ERAITIAGIPQ 153
Query: 203 AVKKALFAISAIMYKFSPR 221
++ + + I +M + P+
Sbjct: 154 SIIECVKQICVVMLESPPK 172
Score = 58 (25.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G ++K++R ++ I + SE +C + + ++G +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEG--NCP---ERIITLAGPTN 66
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA FA+ I+ K EDI T
Sbjct: 67 AIFKA-FAM--IIDKLE--EDISSSMT 88
>RGD|1591892 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1591892
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 92 (37.4 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 313 LCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDI 366
+ P K G +IGKGG TIKSI Q SGA+I++ + N D + T +P I
Sbjct: 377 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQI 431
Score = 81 (33.6 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAE 614
AVG VIG+ G + I+ +G I+ + DR+A I+G P++ + AAE
Sbjct: 281 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAE 332
Score = 80 (33.2 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
Y++ PDG++G +IG+ G+ I+ I+QE+ ++++ G +R
Sbjct: 100 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 141
Score = 79 (32.9 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G +IGK G + +I + SGA IE+ + D ++ I GTP+Q A LI+
Sbjct: 384 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 439
Score = 77 (32.2 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P +K G VIGKGG TIK +++ +G + + + D N
Sbjct: 182 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN 223
Score = 74 (31.1 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I R++ ++ I++ P P SC +++G E+V+
Sbjct: 102 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSC--------MLTGTPESVQ 153
Query: 206 KALFAISAIMYKFSP 220
A + I+ K P
Sbjct: 154 SAKRLLDQIVEKGRP 168
Score = 71 (30.1 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I++P+S++ +IGK G TIK+L+ R +K V +D + T + D + I+G+
Sbjct: 184 EIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGA-----DKPLRITGDP 236
Query: 202 EAVKKA 207
V++A
Sbjct: 237 YKVQQA 242
Score = 53 (23.7 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I + + +T P D
Sbjct: 273 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITG---PPDRCQH 329
Query: 370 AVEAV 374
A E +
Sbjct: 330 AAEII 334
>UNIPROTKB|Q32PX7 [details] [associations]
symbol:Fubp1 "Far upstream element-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0010628 "positive regulation
of gene expression" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591892 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 92 (37.4 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 313 LCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDI 366
+ P K G +IGKGG TIKSI Q SGA+I++ + N D + T +P I
Sbjct: 377 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQI 431
Score = 81 (33.6 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAE 614
AVG VIG+ G + I+ +G I+ + DR+A I+G P++ + AAE
Sbjct: 281 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAE 332
Score = 80 (33.2 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
Y++ PDG++G +IG+ G+ I+ I+QE+ ++++ G +R
Sbjct: 100 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 141
Score = 79 (32.9 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G +IGK G + +I + SGA IE+ + D ++ I GTP+Q A LI+
Sbjct: 384 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 439
Score = 77 (32.2 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P +K G VIGKGG TIK +++ +G + + + D N
Sbjct: 182 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN 223
Score = 74 (31.1 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I R++ ++ I++ P P SC +++G E+V+
Sbjct: 102 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSC--------MLTGTPESVQ 153
Query: 206 KALFAISAIMYKFSP 220
A + I+ K P
Sbjct: 154 SAKRLLDQIVEKGRP 168
Score = 71 (30.1 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I++P+S++ +IGK G TIK+L+ R +K V +D + T + D + I+G+
Sbjct: 184 EIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGA-----DKPLRITGDP 236
Query: 202 EAVKKA 207
V++A
Sbjct: 237 YKVQQA 242
Score = 53 (23.7 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I + + +T P D
Sbjct: 273 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITG---PPDRCQH 329
Query: 370 AVEAV 374
A E +
Sbjct: 330 AAEII 334
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 100 (40.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAIESPDDI 366
+ +R++ P ++ G +IGK G IK IR+ +GAQ+ V D N E +TV+ + PD I
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGV--PDAI 159
Score = 81 (33.6 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPE 608
A+ G +IGKAG+ + IR+ +GA ++++ D + +R +SG P+
Sbjct: 110 ASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPD 157
Score = 80 (33.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHXXXXXXXXXX 99
R+L +GS+IGK G+ + IR+++ AR+ + + +R+ TI
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTAAVFHAVSM 78
Query: 100 XXXXXXXPLCAA 111
LCAA
Sbjct: 79 IAFKLDEDLCAA 90
Score = 76 (31.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
++++P+SQ ++IGKAG IK +R T ++V
Sbjct: 105 RLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
Score = 70 (29.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+KR+R ++ S ++T + S P + I+G +
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQS--SARITISEGSCP--------ERITTITGSTA 70
Query: 203 AVKKALFAISAIMYKFSPREDI 224
AV A+S I +K ED+
Sbjct: 71 AV---FHAVSMIAFKLD--EDL 87
>UNIPROTKB|J9P014 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AAEX03004886
Ensembl:ENSCAFT00000046408 Uniprot:J9P014
Length = 644
Score = 92 (37.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 313 LCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDI 366
+ P K G +IGKGG TIKSI Q SGA+I++ + N D + T +P I
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQI 436
Score = 81 (33.6 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAE 614
AVG VIG+ G + I+ +G I+ + DR+A I+G P++ + AAE
Sbjct: 286 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAE 337
Score = 80 (33.2 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
Y++ PDG++G +IG+ G+ I+ I+QE+ ++++ G +R
Sbjct: 105 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 146
Score = 79 (32.9 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G +IGK G + +I + SGA IE+ + D ++ I GTP+Q A LI+
Sbjct: 389 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 444
Score = 77 (32.2 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P +K G VIGKGG TIK +++ +G + + + D N
Sbjct: 187 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN 228
Score = 74 (31.1 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I R++ ++ I++ P P SC +++G E+V+
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSC--------MLTGTPESVQ 158
Query: 206 KALFAISAIMYKFSP 220
A + I+ K P
Sbjct: 159 SAKRLLDQIVEKGRP 173
Score = 71 (30.1 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I++P+S++ +IGK G TIK+L+ R +K V +D + T + D + I+G+
Sbjct: 189 EIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGA-----DKPLRITGDP 241
Query: 202 EAVKKA 207
V++A
Sbjct: 242 YKVQQA 247
Score = 53 (23.7 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I + + +T P D
Sbjct: 278 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITG---PPDRCQH 334
Query: 370 AVEAV 374
A E +
Sbjct: 335 AAEII 339
>UNIPROTKB|F1S9S5 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:CU695021
Ensembl:ENSSSCT00000004173 Uniprot:F1S9S5
Length = 645
Score = 92 (37.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 313 LCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDI 366
+ P K G +IGKGG TIKSI Q SGA+I++ + N D + T +P I
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQI 436
Score = 81 (33.6 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAE 614
AVG VIG+ G + I+ +G I+ + DR+A I+G P++ + AAE
Sbjct: 286 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAE 337
Score = 80 (33.2 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
Y++ PDG++G +IG+ G+ I+ I+QE+ ++++ G +R
Sbjct: 105 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 146
Score = 79 (32.9 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G +IGK G + +I + SGA IE+ + D ++ I GTP+Q A LI+
Sbjct: 389 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 444
Score = 77 (32.2 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P +K G VIGKGG TIK +++ +G + + + D N
Sbjct: 187 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN 228
Score = 74 (31.1 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I R++ ++ I++ P P SC +++G E+V+
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSC--------MLTGTPESVQ 158
Query: 206 KALFAISAIMYKFSP 220
A + I+ K P
Sbjct: 159 SAKRLLDQIVEKGRP 173
Score = 71 (30.1 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I++P+S++ +IGK G TIK+L+ R +K V +D + T + D + I+G+
Sbjct: 189 EIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGA-----DKPLRITGDP 241
Query: 202 EAVKKA 207
V++A
Sbjct: 242 YKVQQA 247
Score = 53 (23.7 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I + + +T P D
Sbjct: 278 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITG---PPDRCQH 334
Query: 370 AVEAV 374
A E +
Sbjct: 335 AAEII 339
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 100 (40.3 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 29/97 (29%), Positives = 48/97 (49%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK G IK+L SIK+ P + + T + V+I
Sbjct: 377 EQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDAT-------ERMVII 429
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F+P+E++ LE ++
Sbjct: 430 TGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIK 466
Score = 93 (37.8 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 301 GASQSEEL--VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
G+SQ ++L +R+L P +G +IGK G TIK++ + + +++D+ K+N +T
Sbjct: 158 GSSQPKQLDFPLRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIH-RKENAGAAEKPIT 216
Query: 359 AIESPDDIKSMAVEAVLLLQTKINDEDDDTVTIRLLV 395
+P+ S A +L + K DE I L +
Sbjct: 217 IHATPEGC-SEACRMILDIMQKEADETKSAEEIPLKI 252
Score = 89 (36.4 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 37/168 (22%), Positives = 74/168 (44%)
Query: 288 VYSTGLSLV---SGLVGASQS----------EELVIRVLCPFNKIGRVIGKGGGTIKSIR 334
++STGLS++ +G GA+ + E+ V+ + P +G +IGK G IK +
Sbjct: 346 IFSTGLSMLPSSAGARGAAAAAPYHPFAQLPEQEVVNLFIPTQAVGAIIGKKGQHIKQLA 405
Query: 335 QASGAQIDVDDTKD-NRDECVITVTAIESPD-DIKSMA-VEAVLLLQTKINDEDDDTVTI 391
+ +GA I + + + E ++ +T P+ K+ + L + N +++ +
Sbjct: 406 RFAGASIKIAPAEGPDATERMVIITG--PPEAQFKAQGRIFGKLKEENFFNPKEEVKLEA 463
Query: 392 RLLVXXXXXXXXXXXXXXXXNEIRKRTKADVRISKGDKPKCADANDEL 439
+ V NE++ T A+V + + P D N+E+
Sbjct: 464 HIKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTP---DENEEV 508
Score = 85 (35.0 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG-DRVALISGTPEQKRAAENLI 617
AVG +IGK G ++ + + +GA+I+++ ++ +R+ +I+G PE + A+ I
Sbjct: 389 AVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQFKAQGRI 443
Score = 81 (33.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+EE+ +++L + +GR+IGK G +K I Q +G +I + +D
Sbjct: 245 AEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQD 288
Score = 78 (32.5 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
E DE + E + +IL + ++G +IGK G+ + I Q+T ++ +
Sbjct: 238 EADETKSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITI 283
Score = 76 (31.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
R+L P +G++IGK G I ++ ++T+++V + GA ++ +TI++
Sbjct: 170 RMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHA 219
Score = 72 (30.4 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 132 NDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCA 188
++ K E+ +IL +S +IGK G +K++ T T I ++P +D + P +
Sbjct: 240 DETKSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLTIYNPERTIT 299
Query: 189 MEFDNFVLISGESEAVKK 206
++ + E E +KK
Sbjct: 300 VKGSTEACSNAEVEIMKK 317
Score = 69 (29.3 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++LVP+ IIGK G TIK L +T++ + + K E + G SE
Sbjct: 170 RMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRK---ENAGAAEKPITIHATPEGCSE 226
Query: 203 AVKKALFAISAIMYKFSPREDIPLE 227
A + L + + E+IPL+
Sbjct: 227 ACRMILDIMQKEADETKSAEEIPLK 251
Score = 48 (22.0 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 564 AVGKVIGKAGSNLANIRKISGATI 587
A G+VIGK G + ++ ++ A +
Sbjct: 471 AAGRVIGKGGKTVNELQNLTSAEV 494
>UNIPROTKB|F1NV59 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AADN02012752 IPI:IPI00579990
Ensembl:ENSGALT00000014526 ArrayExpress:F1NV59 Uniprot:F1NV59
Length = 632
Score = 86 (35.3 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 2 GDSGKRYRSQRDNDRDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINS 61
GD + ND G NQ ++++ E Y++ PDG++G +IG+ G+ I+
Sbjct: 68 GDQPDAKKVAPQNDSFG-NQLPPMHQQQRSVMTEE--YKV--PDGMVGFIIGRGGEQISR 122
Query: 62 IRQETRARVKVVDPFPGAKDR 82
I+QE+ ++++ G +R
Sbjct: 123 IQQESGCKIQIAPDSGGLPER 143
Score = 81 (33.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAE 614
AVG VIG+ G + I+ +G I+ + DR+A I+G P++ + AAE
Sbjct: 267 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAE 318
Score = 77 (32.2 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P +K G VIGKGG TIK +++ +G + + + D N
Sbjct: 184 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN 225
Score = 75 (31.5 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 313 LCPFNKIGRVIGKG-----GGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDI 366
+ P K G +IGKG G TIKSI Q SGA+I++ + N D + T +P I
Sbjct: 364 IVPTGKTGLIIGKGNVSLRGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQI 423
Score = 74 (31.1 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I R++ ++ I++ P P SC +++G E+V+
Sbjct: 104 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSC--------MLTGTPESVQ 155
Query: 206 KALFAISAIMYKFSP 220
A + I+ K P
Sbjct: 156 SAKRLLDQIVEKGRP 170
Score = 71 (30.1 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I++P+S++ +IGK G TIK+L+ R +K V +D + T + D + I+G+
Sbjct: 186 EIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGA-----DKPLRITGDP 238
Query: 202 EAVKKA 207
V++A
Sbjct: 239 YKVQQA 244
Score = 62 (26.9 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 566 GKVIGKA-----GSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLI 617
G +IGK G + +I + SGA IE+ + D ++ I GTP+Q A LI
Sbjct: 371 GLIIGKGNVSLRGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQLI 430
Query: 618 Q 618
+
Sbjct: 431 E 431
Score = 51 (23.0 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 319 IGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAV 374
+G VIG+ G IK I+ +G +I + + +T P D A E +
Sbjct: 268 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITG---PPDRCQHAAEII 320
>UNIPROTKB|E2RJQ2 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AAEX03004886
Ensembl:ENSCAFT00000032426 Uniprot:E2RJQ2
Length = 668
Score = 92 (37.4 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 313 LCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDI 366
+ P K G +IGKGG TIKSI Q SGA+I++ + N D + T +P I
Sbjct: 405 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQI 459
Score = 81 (33.6 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAE 614
AVG VIG+ G + I+ +G I+ + DR+A I+G P++ + AAE
Sbjct: 309 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAE 360
Score = 80 (33.2 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
Y++ PDG++G +IG+ G+ I+ I+QE+ ++++ G +R
Sbjct: 128 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 169
Score = 79 (32.9 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G +IGK G + +I + SGA IE+ + D ++ I GTP+Q A LI+
Sbjct: 412 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 467
Score = 77 (32.2 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P +K G VIGKGG TIK +++ +G + + + D N
Sbjct: 210 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN 251
Score = 74 (31.1 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I R++ ++ I++ P P SC +++G E+V+
Sbjct: 130 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSC--------MLTGTPESVQ 181
Query: 206 KALFAISAIMYKFSP 220
A + I+ K P
Sbjct: 182 SAKRLLDQIVEKGRP 196
Score = 71 (30.1 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I++P+S++ +IGK G TIK+L+ R +K V +D + T + D + I+G+
Sbjct: 212 EIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGA-----DKPLRITGDP 264
Query: 202 EAVKKA 207
V++A
Sbjct: 265 YKVQQA 270
Score = 53 (23.7 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I + + +T P D
Sbjct: 301 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITG---PPDRCQH 357
Query: 370 AVEAV 374
A E +
Sbjct: 358 AAEII 362
>UNIPROTKB|F1NP95 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02003296
EMBL:AADN02003297 EMBL:AADN02003298 EMBL:AADN02003299
EMBL:AADN02003300 EMBL:AADN02003301 EMBL:AADN02003302
EMBL:AADN02003303 EMBL:AADN02003304 EMBL:AADN02003305
EMBL:AADN02003306 EMBL:AADN02003307 EMBL:AADN02003308
EMBL:AADN02003309 EMBL:AADN02003310 EMBL:AADN02003311
EMBL:AADN02003312 EMBL:AADN02003313 EMBL:AADN02003314
EMBL:AADN02003315 IPI:IPI00814536 Ensembl:ENSGALT00000016012
ArrayExpress:F1NP95 Uniprot:F1NP95
Length = 345
Score = 103 (41.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K+I + SGA + + D N E V+TV+ P+ +
Sbjct: 133 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 190
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 191 K-AVE--LIIQ-KIQED 203
Score = 92 (37.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 35/141 (24%), Positives = 63/141 (44%)
Query: 140 EECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISG 199
++ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SG
Sbjct: 131 KQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQE--RVVTVSG 184
Query: 200 ESEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPIL 259
E E +KA + I+ K +ED P + G Y N +L
Sbjct: 185 EPEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVL 238
Query: 260 PSRSVPS-ILGAARVPDLQGY 279
P+ + + +LG A + + +
Sbjct: 239 PTAAAAAGLLGHANLAGVAAF 259
Score = 91 (37.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRV 83
++ G + ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV
Sbjct: 23 KRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 82
Query: 84 VTI 86
I
Sbjct: 83 CLI 85
Score = 90 (36.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQKRAAENLI 617
+ G +IGK G+ + I + SGA +++S +RV +SG PEQ R A LI
Sbjct: 140 STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELI 196
Score = 80 (33.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
++VL P G +IGKGG TI +++ +GA I + +KD
Sbjct: 35 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 73
Score = 75 (31.5 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KD 179
++L+PS + +IIGK G TI +L+ +T +IK++ KD
Sbjct: 36 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 73
>GENEDB_PFALCIPARUM|PFF0250w [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 92 (37.4 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
+R+L P +IG+ G IK I + SG+QI V K++ +E ++ +T SP+ K +
Sbjct: 464 MRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKESENEKLVLITG--SPE-AKIL 520
Query: 370 AVEAVLLLQTKINDEDDDTVTIRLLV 395
A +VL+LQ K+ + ++ + LV
Sbjct: 521 A--SVLVLQ-KLEEYENPAIAREGLV 543
Score = 88 (36.0 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
A +IG+ GS + I + SG+ I+++ +K S +++ LI+G+PE K A L+
Sbjct: 472 AASFLIGRKGSIIKYITEQSGSQIQVAKNKESENEKLVLITGSPEAKILASVLV 525
Score = 87 (35.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 32/130 (24%), Positives = 54/130 (41%)
Query: 312 VLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNR-----DECVITVTAIESPDDI 366
+L P IG VIGK G ++ I +A GA I D E ++T+ + +
Sbjct: 63 LLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSVYPPPSEKILTIFGKK---EN 119
Query: 367 KSMAVEAVLLLQTKIND--EDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVRI 424
K A+E VL + D E+D +I ++V + + +R+ ++ +
Sbjct: 120 KKKALELVLGKSKSVMDFQEEDGKESIVIIVPTRSIPIIIGQKGSKISSLSERSSCEINV 179
Query: 425 SKGDKPKCAD 434
K D P D
Sbjct: 180 HKDDVPGIKD 189
Score = 82 (33.9 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 1 MGDSGKRYRSQRDNDRDGKNQKRRINEKDEKGN-----EESVIYRILCPDGVIGSVIGKS 55
+ D + QR+ R + R ++D K N E + Y +L P+ IG VIGKS
Sbjct: 21 ISDEENIIKRQRNESR---SSTRSYMDEDGKSNCATSTEMRIPYCLLLPNRAIGYVIGKS 77
Query: 56 GKVINSIRQETRARVKV-----VDPFPGAKDRVVTIY 87
G + I + A +K V +P ++++TI+
Sbjct: 78 GNNVREIEKACGAVIKCQKEFDVSVYPPPSEKILTIF 114
Score = 81 (33.6 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 21 QKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV-VDPFPGA 79
+ + + + E+ +ES++ I+ P I +IG+ G I+S+ + + + V D PG
Sbjct: 130 KSKSVMDFQEEDGKESIV--IIVPTRSIPIIIGQKGSKISSLSERSSCEINVHKDDVPGI 187
Query: 80 KDRVVTIYS 88
KD+ + I S
Sbjct: 188 KDKAIFIKS 196
Score = 71 (30.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 134 KKRKEKEECQI--LVPSSQSANIIGKAGATIKRLRSKTRT-SIKVTPKDASEPTHSCAME 190
K KE C + ++ +A IIGKAG IK +RS T ++ V D E +C
Sbjct: 373 KYGKEVSPCVVRFVLDVETTAWIIGKAGCHIKEIRSVTGAGAVIVDAPDNIENVKTC--- 429
Query: 191 FDNFVLISGESEAVKKAL 208
D + +SG +E AL
Sbjct: 430 -DRILTLSGSAENKFNAL 446
Score = 70 (29.7 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSS-----RGDRVALISGTPEQKRAAENLI 617
+IGKAG ++ IR ++GA + D+ + DR+ +SG+ E K A LI
Sbjct: 395 IIGKAGCHIKEIRSVTGAGAVIVDAPDNIENVKTCDRILTLSGSAENKFNALKLI 449
Score = 59 (25.8 bits), Expect = 6.6e-06, Sum P(3) = 6.6e-06
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECV 354
I ++ P I +IG+ G I S+ + S +I+V DD +D+ +
Sbjct: 146 IVIIVPTRSIPIIIGQKGSKISSLSERSSCEINVHKDDVPGIKDKAI 192
Score = 55 (24.4 bits), Expect = 6.2e-06, Sum P(3) = 6.2e-06
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 139 KEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
KE I+VP+ IIG+ G+ I L ++ I V D
Sbjct: 143 KESIVIIVPTRSIPIIIGQKGSKISSLSERSSCEINVHKDD 183
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 258 ILPSRSVPSILG 269
I+P+RS+P I+G
Sbjct: 149 IVPTRSIPIIIG 160
>UNIPROTKB|C6KSP9 [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 92 (37.4 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
+R+L P +IG+ G IK I + SG+QI V K++ +E ++ +T SP+ K +
Sbjct: 464 MRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKESENEKLVLITG--SPE-AKIL 520
Query: 370 AVEAVLLLQTKINDEDDDTVTIRLLV 395
A +VL+LQ K+ + ++ + LV
Sbjct: 521 A--SVLVLQ-KLEEYENPAIAREGLV 543
Score = 88 (36.0 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
A +IG+ GS + I + SG+ I+++ +K S +++ LI+G+PE K A L+
Sbjct: 472 AASFLIGRKGSIIKYITEQSGSQIQVAKNKESENEKLVLITGSPEAKILASVLV 525
Score = 87 (35.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 32/130 (24%), Positives = 54/130 (41%)
Query: 312 VLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNR-----DECVITVTAIESPDDI 366
+L P IG VIGK G ++ I +A GA I D E ++T+ + +
Sbjct: 63 LLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSVYPPPSEKILTIFGKK---EN 119
Query: 367 KSMAVEAVLLLQTKIND--EDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVRI 424
K A+E VL + D E+D +I ++V + + +R+ ++ +
Sbjct: 120 KKKALELVLGKSKSVMDFQEEDGKESIVIIVPTRSIPIIIGQKGSKISSLSERSSCEINV 179
Query: 425 SKGDKPKCAD 434
K D P D
Sbjct: 180 HKDDVPGIKD 189
Score = 82 (33.9 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 1 MGDSGKRYRSQRDNDRDGKNQKRRINEKDEKGN-----EESVIYRILCPDGVIGSVIGKS 55
+ D + QR+ R + R ++D K N E + Y +L P+ IG VIGKS
Sbjct: 21 ISDEENIIKRQRNESR---SSTRSYMDEDGKSNCATSTEMRIPYCLLLPNRAIGYVIGKS 77
Query: 56 GKVINSIRQETRARVKV-----VDPFPGAKDRVVTIY 87
G + I + A +K V +P ++++TI+
Sbjct: 78 GNNVREIEKACGAVIKCQKEFDVSVYPPPSEKILTIF 114
Score = 81 (33.6 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 21 QKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV-VDPFPGA 79
+ + + + E+ +ES++ I+ P I +IG+ G I+S+ + + + V D PG
Sbjct: 130 KSKSVMDFQEEDGKESIV--IIVPTRSIPIIIGQKGSKISSLSERSSCEINVHKDDVPGI 187
Query: 80 KDRVVTIYS 88
KD+ + I S
Sbjct: 188 KDKAIFIKS 196
Score = 71 (30.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 134 KKRKEKEECQI--LVPSSQSANIIGKAGATIKRLRSKTRT-SIKVTPKDASEPTHSCAME 190
K KE C + ++ +A IIGKAG IK +RS T ++ V D E +C
Sbjct: 373 KYGKEVSPCVVRFVLDVETTAWIIGKAGCHIKEIRSVTGAGAVIVDAPDNIENVKTC--- 429
Query: 191 FDNFVLISGESEAVKKAL 208
D + +SG +E AL
Sbjct: 430 -DRILTLSGSAENKFNAL 446
Score = 70 (29.7 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSS-----RGDRVALISGTPEQKRAAENLI 617
+IGKAG ++ IR ++GA + D+ + DR+ +SG+ E K A LI
Sbjct: 395 IIGKAGCHIKEIRSVTGAGAVIVDAPDNIENVKTCDRILTLSGSAENKFNALKLI 449
Score = 59 (25.8 bits), Expect = 6.6e-06, Sum P(3) = 6.6e-06
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECV 354
I ++ P I +IG+ G I S+ + S +I+V DD +D+ +
Sbjct: 146 IVIIVPTRSIPIIIGQKGSKISSLSERSSCEINVHKDDVPGIKDKAI 192
Score = 55 (24.4 bits), Expect = 6.2e-06, Sum P(3) = 6.2e-06
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 139 KEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
KE I+VP+ IIG+ G+ I L ++ I V D
Sbjct: 143 KESIVIIVPTRSIPIIIGQKGSKISSLSERSSCEINVHKDD 183
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 258 ILPSRSVPSILG 269
I+P+RS+P I+G
Sbjct: 149 IVPTRSIPIIIG 160
>UNIPROTKB|F1S9S9 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:CU695021
Ensembl:ENSSSCT00000004169 Uniprot:F1S9S9
Length = 708
Score = 92 (37.4 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 313 LCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDI 366
+ P K G +IGKGG TIKSI Q SGA+I++ + N D + T +P I
Sbjct: 422 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQI 476
Score = 81 (33.6 bits), Expect = 7.7e-07, Sum P(3) = 7.7e-07
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAE 614
AVG VIG+ G + I+ +G I+ + DR+A I+G P++ + AAE
Sbjct: 326 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAE 377
Score = 80 (33.2 bits), Expect = 1.7e-07, Sum P(4) = 1.7e-07
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
Y++ PDG++G +IG+ G+ I+ I+QE+ ++++ G +R
Sbjct: 145 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 186
Score = 79 (32.9 bits), Expect = 1.7e-07, Sum P(4) = 1.7e-07
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G +IGK G + +I + SGA IE+ + D ++ I GTP+Q A LI+
Sbjct: 429 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 484
Score = 77 (32.2 bits), Expect = 7.7e-07, Sum P(3) = 7.7e-07
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
V ++ P +K G VIGKGG TIK +++ +G + + + D N
Sbjct: 227 VQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN 268
Score = 74 (31.1 bits), Expect = 4.9e-06, Sum P(3) = 4.9e-06
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVK 205
VP IIG+ G I R++ ++ I++ P P SC +++G E+V+
Sbjct: 147 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSC--------MLTGTPESVQ 198
Query: 206 KALFAISAIMYKFSP 220
A + I+ K P
Sbjct: 199 SAKRLLDQIVEKGRP 213
Score = 71 (30.1 bits), Expect = 1.7e-07, Sum P(4) = 1.7e-07
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I++P+S++ +IGK G TIK+L+ R +K V +D + T + D + I+G+
Sbjct: 229 EIMIPASKAGLVIGKGGETIKQLQE--RAGVKMVMIQDGPQNTGA-----DKPLRITGDP 281
Query: 202 EAVKKA 207
V++A
Sbjct: 282 YKVQQA 287
Score = 53 (23.7 bits), Expect = 1.7e-07, Sum P(4) = 1.7e-07
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I + + +T P D
Sbjct: 318 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITG---PPDRCQH 374
Query: 370 AVEAV 374
A E +
Sbjct: 375 AAEII 379
>ZFIN|ZDB-GENE-041121-12 [details] [associations]
symbol:zgc:101598 "zgc:101598" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-041121-12 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 OrthoDB:EOG4X97H1 EMBL:BC085379
IPI:IPI00487369 RefSeq:NP_001007777.1 UniGene:Dr.76973
ProteinModelPortal:Q5RKQ3 SMR:Q5RKQ3 STRING:Q5RKQ3 GeneID:493616
KEGG:dre:493616 InParanoid:Q5RKQ3 NextBio:20865427
ArrayExpress:Q5RKQ3 Uniprot:Q5RKQ3
Length = 572
Score = 96 (38.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDIKSMAVEA 373
P +K G VIGKGG TIK+I Q SGA +++ + N D V T + SP ++ MA +
Sbjct: 367 PADKCGLVIGKGGETIKNINQQSGAHVELQRNPPPNTDPNVRTFSIRGSPQQME-MARQL 425
Query: 374 V 374
+
Sbjct: 426 I 426
Score = 86 (35.3 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
A+ G VIGK G + NI + SGA +E+ + D R I G+P+Q A LI
Sbjct: 368 ADKCGLVIGKGGETIKNINQQSGAHVELQRNPPPNTDPNVRTFSIRGSPQQMEMARQLID 427
Query: 619 AFIMAT 624
I A+
Sbjct: 428 DKIGAS 433
Score = 83 (34.3 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
S + G+S +E++I P +K+G VIGKGG TIK +++ +G ++
Sbjct: 162 SQMDGSSAVQEILI----PASKVGLVIGKGGDTIKQLQERTGVKM 202
Score = 83 (34.3 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
AVG VIG+ G + I+ +G I+ DRVA + G PE+ + A +LI +
Sbjct: 269 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPDRVAQVMGQPERCQHAVHLINELV 326
Score = 83 (34.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 36/189 (19%), Positives = 72/189 (38%)
Query: 36 SVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV--DPFPGAKDRVVTIYSHXXXX 93
S + IL P +G VIGK G I +++ T ++ ++ DP P D+ + I
Sbjct: 168 SAVQEILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMPTGSDKPLRI------- 220
Query: 94 XXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDNDKKRKEKEECQILVPSSQSAN 153
+ A++ ++++ +D + + VP
Sbjct: 221 --------SGDPYKVQQARELVVEIIREKDQGDFRSGRSDFGSRLGSSIDVAVPRFAVGI 272
Query: 154 IIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISA 213
+IG+ G IK++++ I+ P D P D + G+ E + A+ I+
Sbjct: 273 VIGRNGEMIKKIQNDAGVRIQFKPDDGISP--------DRVAQVMGQPERCQHAVHLINE 324
Query: 214 IMYKFSPRE 222
++ R+
Sbjct: 325 LVQTAQERD 333
Score = 72 (30.4 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 44 PDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
PD ++G +IG+ G+ I I+ E+ ++++ G DR T+
Sbjct: 91 PDKMVGFIIGRGGEQITRIQLESNCKIQIAADSGGMMDRPCTL 133
Score = 53 (23.7 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P +G VIG+ G IK I+ +G +I
Sbjct: 261 IDVAVPRFAVGIVIGRNGEMIKKIQNDAGVRI 292
Score = 47 (21.6 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAM 189
VP IIG+ G I R++ ++ I++ C +
Sbjct: 90 VPDKMVGFIIGRGGEQITRIQLESNCKIQIAADSGGMMDRPCTL 133
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 102 (41.0 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K++ + SGA + + D N E V+TV+ P+ +
Sbjct: 133 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 190
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 191 K-AVE--LIIQ-KIQED 203
Score = 90 (36.7 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 35/140 (25%), Positives = 62/140 (44%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
+ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SGE
Sbjct: 132 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK----PDGINLQE--RVVTVSGE 185
Query: 201 SEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPILP 260
E +KA + I+ K +ED P + G Y N +LP
Sbjct: 186 PEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP 239
Query: 261 SRSVPS-ILGAARVPDLQGY 279
+ + + +LG A + + +
Sbjct: 240 TAAAAAGLLGHANLAGVAAF 259
Score = 89 (36.4 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG--DRVALISGTPEQKRAAENLI 617
+ G +IGK G+ + + + SGA +++S +RV +SG PEQ R A LI
Sbjct: 140 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELI 196
Score = 87 (35.7 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 33 NEESVIY--RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRVVTI 86
+EE Y ++L P GS+IGK G+ I +++ET A +K+ D +PG +RV I
Sbjct: 3 SEEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI 61
Score = 81 (33.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
+ + + ++VL P G +IGKGG TI +++ +GA I + +KD
Sbjct: 3 SEEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 49
Score = 75 (31.5 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KD 179
++L+PS + +IIGK G TI +L+ +T +IK++ KD
Sbjct: 12 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 49
>UNIPROTKB|A6QP83 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
GeneTree:ENSGT00650000093048 CTD:8939 OMA:AAPHQNT OrthoDB:EOG4X97H1
EMBL:DAAA02032235 EMBL:DAAA02032236 EMBL:BC149198 IPI:IPI00714784
RefSeq:NP_001094687.1 UniGene:Bt.2190 SMR:A6QP83
Ensembl:ENSBTAT00000017383 GeneID:541080 KEGG:bta:541080
InParanoid:A6QP83 NextBio:20878996 Uniprot:A6QP83
Length = 572
Score = 85 (35.0 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
A+ G VIGK G N+ +I + SGA +E+ + D R+ I G P Q A +LI
Sbjct: 363 ADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPSTDPNLRIFTIRGLPPQIEVARHLID 422
Query: 619 AFIMAT 624
+ T
Sbjct: 423 EKVGGT 428
Score = 84 (34.6 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
P +K G VIGKGG IKSI Q SGA +++
Sbjct: 362 PADKCGLVIGKGGENIKSINQQSGAHVEL 390
Score = 80 (33.2 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 39/170 (22%), Positives = 65/170 (38%)
Query: 296 VSGLVGASQSEELVI--RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDE- 352
V +GA + VI P +G +IG+GG I I+ SG +I + E
Sbjct: 64 VGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Query: 353 -CVITVTAIESPDDIKSMAVEAVLLLQTKI---NDEDDDTVTIRLLVXXXXXXXXXXXXX 408
CV+T T ES + K + + V + ND D ++ + +
Sbjct: 124 PCVLTGTP-ESIEQAKRLLGQIVDRCRNGPGFHNDVDGNSTVQEIPIPASKVGLVIGKGG 182
Query: 409 XXXNEIRKRTKAD-VRISKGDKPKCADANDELXXXXXXXXXXRDALVQII 457
++++RT V I G P AD + R+ +++II
Sbjct: 183 ETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQAREMVLEII 232
Score = 73 (30.8 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622
AVG VIG+ G + I+ +G I+ +R A + G P++ + A ++I I+
Sbjct: 264 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVISELIL 322
Score = 71 (30.1 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I +P+S+ +IGK G TIK+L+ RT +K V +D PT + D + I+G+
Sbjct: 166 EIPIPASKVGLVIGKGGETIKQLQE--RTGVKMVMIQDGPLPTGA-----DKPLRITGDP 218
Query: 202 EAVKKA 207
V++A
Sbjct: 219 FKVQQA 224
Score = 67 (28.6 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 44 PDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
PD ++G +IG+ G+ I+ I+ E+ ++++ G +R
Sbjct: 85 PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPER 123
Score = 54 (24.1 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I V P +G VIG+ G IK I+ +G +I
Sbjct: 256 IEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRI 287
>ZFIN|ZDB-GENE-030131-2032 [details] [associations]
symbol:hdlbp "high density lipoprotein-binding
protein (vigilin)" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0042221 "response to chemical stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-030131-2032
GO:GO:0042221 GO:GO:0003723 GeneTree:ENSGT00690000102206
EMBL:BX957353 IPI:IPI00771212 Ensembl:ENSDART00000055771
ArrayExpress:E7F9M4 Bgee:E7F9M4 Uniprot:E7F9M4
Length = 1285
Score = 87 (35.7 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIES 362
++S + +R ++K +IGKGGG I+ +R ++GA+I + T +++D +ITV E
Sbjct: 731 TKSHTVELRAKPEYHKF--LIGKGGGNIRKVRDSTGARI-IFPTAEDKDHELITVIGTEE 787
Query: 363 PDDIKSMAVEAVL 375
+EA++
Sbjct: 788 AVAEAQKELEALI 800
Score = 76 (31.8 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPT 184
++K+K + V SQ +IG G T++ + +T S+++ P D+S T
Sbjct: 292 EEKKKNATTIAVEVKKSQHKYVIGPKGNTLQEILERTGVSVEIPPLDSSSET 343
Score = 76 (31.8 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 316 FNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
F+K +IGKGG IK IR+ + +ID+ N + VIT
Sbjct: 598 FHK--NIIGKGGANIKKIREETNTKIDLPAENSNSEMIVIT 636
Score = 70 (29.7 bits), Expect = 8.9e-07, Sum P(4) = 8.9e-07
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDAS 181
NIIGK GA IK++R +T T I + ++++
Sbjct: 601 NIIGKGGANIKKIREETNTKIDLPAENSN 629
Score = 69 (29.3 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 144 ILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEA 203
+ +P +IGK+G ++ L KT T I++ D +P+ N + ISG E
Sbjct: 158 VAIPKEHHRFVIGKSGEKLQELELKTATKIQIPRPD--DPS--------NQIKISGTKEG 207
Query: 204 VKKALFAISAI 214
++KA I I
Sbjct: 208 LEKAKHEILLI 218
Score = 65 (27.9 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 567 KVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
K+IG+ G+ +++IR I+ + D++ I+G + AA + IQA +
Sbjct: 1078 KIIGRKGAIISHIRHDHEVNIQFPEKNDENQDQIT-ITGYEQNAIAARDAIQAIV 1131
Score = 65 (27.9 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
+IGK G N+ +R +GA I ++ + + +I GT E A+ ++A I
Sbjct: 748 LIGKGGGNIRKVRDSTGARIIFPTAEDKDHELITVI-GTEEAVAEAQKELEALI 800
Score = 64 (27.6 bits), Expect = 2.3e-07, Sum P(4) = 2.3e-07
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVT 85
E+D++ E I ++ P + G GK++ + QET AR+ V P + V+T
Sbjct: 221 EQDKRAVERMNIDKVFHP-----FITGAHGKLVGDLMQETGARINVPPPSVNKTEIVIT 274
Score = 47 (21.6 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP 75
VIGKSG+ + + +T ++++ P
Sbjct: 168 VIGKSGEKLQELELKTATKIQIPRP 192
Score = 41 (19.5 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 50 SVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
++IG+ G+ I IR + V + P P K +V +
Sbjct: 527 AIIGQKGEKIKEIRDKF-PEVIINFPDPAQKSDIVQL 562
Score = 41 (19.5 bits), Expect = 0.00054, Sum P(4) = 0.00054
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 136 RKEKEECQ-ILVPSSQSANIIGKAGATIKRLRSK 168
R E E + +++ IIG+ G IK +R K
Sbjct: 509 RMENERTKDMIIEQRFHRAIIGQKGEKIKEIRDK 542
Score = 40 (19.1 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVV 84
VIG G + I + T V++ P + + V+
Sbjct: 313 VIGPKGNTLQEILERTGVSVEI-PPLDSSSETVI 345
Score = 38 (18.4 bits), Expect = 9.3e-05, Sum P(4) = 9.3e-05
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 583 SGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMAT 624
+G E D + + V ++SG E+ AA ++A + T
Sbjct: 945 NGEVKEPVDPTAPKKCDVIVLSGRKERCEAAVEALKALVPVT 986
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 111 (44.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 34 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 93
Query: 361 ESPDDIKSMAVE-AVLLLQTKINDEDDDTVTI 391
P I + V++L+T ++ VTI
Sbjct: 94 --PQSIIECVKQICVVMLET-LSQSPPKGVTI 122
Score = 91 (37.1 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTI 86
V R++ P GS+IGK G I IR+ T A+V+V D P + +R +TI
Sbjct: 40 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITI 90
Score = 85 (35.0 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 297 SGLVGASQ--SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+GL ++Q S EL I P + IG +IG+ G I IRQ SGAQI + + + +
Sbjct: 222 AGLDASAQTTSHELTI----PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQ 277
Query: 355 ITVT 358
+T+T
Sbjct: 278 VTIT 281
Score = 78 (32.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++++ DR I+G+ A+ LI
Sbjct: 242 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 294
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 116 (45.9 bits), Expect = 0.00023, P = 0.00023
Identities = 39/127 (30%), Positives = 63/127 (49%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
L IR+L ++G +IGK G T+K +R+ SGA+I++ D + E ++T+T S K
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISD--GSSPERIVTITGA-SEVIFK 73
Query: 368 SMAVEAVL----LLQTKINDE--DDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKAD 421
+ A+ A +L + IN VT+RL+ EIR+ T A
Sbjct: 74 AFAMIAEKFEEDILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQ 133
Query: 422 VRISKGD 428
V+++ GD
Sbjct: 134 VQVA-GD 139
Score = 95 (38.5 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVT 358
+ +R++ P ++ G +IGKGG IK IR+++GAQ+ V D + E +T++
Sbjct: 101 VTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDLLPDSTERAVTIS 152
Score = 90 (36.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 25 INEKD----EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAK 80
+NE++ E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + D +
Sbjct: 1 MNEREGGVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISDG--SSP 58
Query: 81 DRVVTI 86
+R+VTI
Sbjct: 59 ERIVTI 64
Score = 82 (33.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G T+K++R ++ I ++ D S P + V I+G SE
Sbjct: 20 RLLMHGKEVGSIIGKKGETVKKMREESGARINIS--DGSSP--------ERIVTITGASE 69
Query: 203 AVKKALFAISAIMYKFSPREDI 224
+ KA FA+ I KF EDI
Sbjct: 70 VIFKA-FAM--IAEKFE--EDI 86
Score = 82 (33.9 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTP 607
A+ G +IGK GS + IR+ +GA ++++ D +R ISGTP
Sbjct: 109 ASQCGSLIGKGGSKIKEIRESTGAQVQVAGDLLPDSTERAVTISGTP 155
Score = 81 (33.6 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++ P+SQ ++IGK G+ IK +R T ++V + T + V ISG
Sbjct: 104 RLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDLLPDST-------ERAVTISGTPH 156
Query: 203 AVKKALFAISAIMYKFSPR 221
A+ + + I +M + P+
Sbjct: 157 AITQCVKHICTVMLESPPK 175
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 107 (42.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 71/313 (22%), Positives = 120/313 (38%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
D K E +IL +S +IGK G +K++ T T K+T + T +
Sbjct: 272 DTKVTEDIPLKILAHNSLVGRLIGKEGRNLKKIEEDTET--KITISSLQDLT---IYNPE 326
Query: 193 NFVLISGESEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLY 252
+++ G EA +A I M K RE E V A G++
Sbjct: 327 RTIIVKGSIEACCRAEVEI---MKKL--RE--AYENDVA-AINQQSNLIPGLSLSALGIF 378
Query: 253 PNADPILPSRSVPSILGAARVPDLQGYAD-TGNTWPVYST-GLSLVSGLVGASQS-EELV 309
+LP + P G VP GY G++ + G+ SG+ + E+ V
Sbjct: 379 STGLSVLPPAAGPR--GIPPVPPT-GYNPFLGHSSQLGGLYGVPPASGISHQHTAPEQEV 435
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD--DTKDNRDECVITVTAIESPDDIK 367
+ + P +G +IGK G IK + + +GA I + ++ D VI E+ K
Sbjct: 436 VYLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVIITGPPEA--QFK 493
Query: 368 SMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVRISK 426
+ + L + +++ + + V NE++ T A+V + +
Sbjct: 494 AQGRIFGKLKEENFFTAKEEVKLETHIKVPSSAAGRVIGKGGKTVNELQNLTSAEVIVPR 553
Query: 427 GDKPKCADANDEL 439
P D NDE+
Sbjct: 554 DQTP---DENDEV 563
Score = 91 (37.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV--DDTKDNRDECVITVT 358
A + +L + P + GRVIGKGG T+ ++ + A++ V D T D DE + ++
Sbjct: 510 AKEEVKLETHIKVPSSAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENDEVFVKIS 568
Score = 90 (36.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNF 194
K + K E I VPSS + +IGK G T+ L++ T + + P+D + + + F
Sbjct: 511 KEEVKLETHIKVPSSAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPDEND-----EVF 564
Query: 195 VLISGESEAVKKALFAISAIMYKFSPRE 222
V ISG A + A I I+ + +E
Sbjct: 565 VKISGHFFASQTAQRKIREIIQQVKQQE 592
Score = 89 (36.4 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 27/129 (20%), Positives = 61/129 (47%)
Query: 300 VGASQSE-ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
+G+ Q + + +R+L P +G +IGK G TIK+I + + +++D+ K+N +T
Sbjct: 189 LGSRQKQPDFPLRMLVPTQFVGAIIGKEGLTIKNITKQTQSKVDIH-RKENAGAAEKPIT 247
Query: 359 AIESPDDIKSMAVEAVLLLQTK--INDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRK 416
+P+ S A ++ + K ++ + + + +++L +I +
Sbjct: 248 IHSTPEGC-STACHMIMDIMQKEAVDTKVTEDIPLKILAHNSLVGRLIGKEGRNLKKIEE 306
Query: 417 RTKADVRIS 425
T+ + IS
Sbjct: 307 DTETKITIS 315
Score = 85 (35.0 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAAENLI 617
AVG +IGK G ++ + + +GA+I+++ ++S R+ +I+G PE + A+ I
Sbjct: 444 AVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVIITGPPEAQFKAQGRI 498
Score = 81 (33.6 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
R+L P +G++IGK G I +I ++T+++V + GA ++ +TI+S
Sbjct: 201 RMLVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKENAGAAEKPITIHS 250
Score = 73 (30.8 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 17/67 (25%), Positives = 36/67 (53%)
Query: 300 VGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD----NRDECVI 355
V +E++ +++L + +GR+IGK G +K I + + +I + +D N + +I
Sbjct: 271 VDTKVTEDIPLKILAHNSLVGRLIGKEGRNLKKIEEDTETKITISSLQDLTIYNPERTII 330
Query: 356 TVTAIES 362
+IE+
Sbjct: 331 VKGSIEA 337
Score = 68 (29.0 bits), Expect = 6.6e-06, Sum P(3) = 6.6e-06
Identities = 27/89 (30%), Positives = 42/89 (47%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++LVP+ IIGK G TIK + +T++ + + K+ ++ A E + I E
Sbjct: 201 RMLVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKE-----NAGAAEKP--ITIHSTPE 253
Query: 203 AVKKALFAISAIMYKFSP----REDIPLE 227
A I IM K + EDIPL+
Sbjct: 254 GCSTACHMIMDIMQKEAVDTKVTEDIPLK 282
Score = 59 (25.8 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVAL-ISGTPEQKRAAENLIQA 619
++A G+VIGK G + ++ ++ A + + D D V + ISG + A+ I+
Sbjct: 524 SSAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENDEVFVKISGHFFASQTAQRKIRE 583
Query: 620 FI 621
I
Sbjct: 584 II 585
>ZFIN|ZDB-GENE-060929-1258 [details] [associations]
symbol:igf2bp1 "insulin-like growth factor 2 mRNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322
SMART:SM00360 ZFIN:ZDB-GENE-060929-1258 GO:GO:0005634 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0070937
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T EMBL:BC124196 IPI:IPI00800578
RefSeq:NP_001070027.1 UniGene:Dr.81351 ProteinModelPortal:Q08CK7
SMR:Q08CK7 PRIDE:Q08CK7 GeneID:558182 KEGG:dre:558182
InParanoid:Q08CK7 NextBio:20882359 Uniprot:Q08CK7
Length = 598
Score = 102 (41.0 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 31/99 (31%), Positives = 49/99 (49%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ +IGK G IK+L SIK+ P +A P M V++
Sbjct: 406 EQETVHVYIPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEA--PDSKMRM-----VIV 458
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVREA 233
+G EA KA I + + F P+E++ LET ++ A
Sbjct: 459 TGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIKVA 497
Score = 101 (40.6 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 30/101 (29%), Positives = 52/101 (51%)
Query: 290 STGLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDN 349
S +S SG+ Q ++ +R+L P +G +IGK G TI++I + + ++IDV K+N
Sbjct: 181 SRQMSPGSGIPSKHQHADIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVH-RKEN 239
Query: 350 RDECVITVTAIESPDDIKSMAVEAVLLLQTKINDEDDDTVT 390
++ +P+ S A +L + +N E DT T
Sbjct: 240 AGAAEKPISIHSTPEGC-SAACRMILEI---MNQEAKDTKT 276
Score = 84 (34.6 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD-RVALISGTPEQKRAAENLI 617
A AVG +IGK G ++ + + +GA+I+++ +++ R+ +++G PE + A+ I
Sbjct: 416 AQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPDSKMRMVIVTGPPEAQFKAQGRI 472
Score = 83 (34.3 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 32/145 (22%), Positives = 61/145 (42%)
Query: 298 GLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD--DTKDNRDECVI 355
G +GAS+ E + V P +G +IGK G IK + + +GA I + + D++ VI
Sbjct: 400 GPMGASEQE--TVHVYIPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPDSKMRMVI 457
Query: 356 TVTAIESPDDIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEI 414
E+ K+ + L + +++ + + V NE+
Sbjct: 458 VTGPPEA--QFKAQGRIYGKLKEENFFGPKEEVKLETHIKVAAAAAGRVIGKGGKTVNEL 515
Query: 415 RKRTKADVRISKGDKPKCADANDEL 439
+ T A+V + + P D +D++
Sbjct: 516 QNLTAAEVVVPREQTP---DEHDQV 537
Score = 80 (33.2 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 31 KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
K + R+L P +G++IGK G I +I ++T++++ V GA ++ ++I+S
Sbjct: 193 KHQHADIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKPISIHS 251
Score = 74 (31.1 bits), Expect = 4.1e-07, Sum P(3) = 4.1e-07
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
++E+ ++VL N +GR+IGK G +K + Q + +I + +D
Sbjct: 277 ADEVPLKVLAHNNFVGRLIGKEGRNLKKVEQDTDTKITISPLQD 320
Score = 72 (30.4 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
++LVP+ IIGK GATI+ + +T++ I V K+
Sbjct: 202 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKE 238
Score = 67 (28.6 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
KD K +E V ++L + +G +IGK G+ + + Q+T ++ +
Sbjct: 272 KDTKTADE-VPLKVLAHNNFVGRLIGKEGRNLKKVEQDTDTKITI 315
Score = 64 (27.6 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KDAS--EPTHSCAM 189
D K ++ ++L ++ +IGK G +K++ T T I ++P +D + P + +
Sbjct: 273 DTKTADEVPLKVLAHNNFVGRLIGKEGRNLKKVEQDTDTKITISPLQDLTLYNPERTITV 332
Query: 190 EFDNFVLISGESEAVKK 206
+ E E +KK
Sbjct: 333 KGSIEACCLAEQEIMKK 349
Score = 50 (22.7 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
A A G+VIGK G + ++ ++ A +
Sbjct: 498 AAAAGRVIGKGGKTVNELQNLTAAEV 523
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 138 (53.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 75/348 (21%), Positives = 137/348 (39%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSH 89
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL--- 61
Query: 90 XXXXXXXXXXXXXXXXXPLCAAQDAL-LKVHXXXXXXXXXXTDNDKKRKEKEECQILVPS 148
P A A + + T++ + +++VP+
Sbjct: 62 ---------------AGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPA 106
Query: 149 SQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKAL 208
SQ ++IGK G IK +R T ++V T A+ + E VK+
Sbjct: 107 SQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTER-AITIAG--IPQSIIECVKQIC 163
Query: 209 FAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGG---LYPNADPIL---PSR 262
+ + + SP + + + + + G +P+ P + P
Sbjct: 164 VVMLETLSQ-SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDL 222
Query: 263 SVP-----SILGAARVPD-----LQGYADTGNTWPVYSTGLSLVSGLVGASQ--SEELVI 310
P +I G +P L A + +P+ +GL ++Q S EL I
Sbjct: 223 EGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTI 282
Query: 311 RVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
P + IG +IG+ G I IRQ SGAQI + + + + +T+T
Sbjct: 283 ----PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTIT 326
Score = 111 (44.1 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 151
Query: 361 ESPDDIKSMAVE-AVLLLQTKINDEDDDTVTI 391
P I + V++L+T ++ VTI
Sbjct: 152 --PQSIIECVKQICVVMLET-LSQSPPKGVTI 180
Score = 106 (42.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 37/138 (26%), Positives = 65/138 (47%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVIT 356
+G++ + L IR+L ++G +IGK G ++K +R+ SGA+I++ + N E +IT
Sbjct: 3 TGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIIT 60
Query: 357 VTAIESPDDIKSMAV------EAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXX 410
+ + K+ A+ E + T VT+RL+V
Sbjct: 61 LAGPTNAI-FKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCK 119
Query: 411 XNEIRKRTKADVRISKGD 428
EIR+ T A V+++ GD
Sbjct: 120 IKEIRESTGAQVQVA-GD 136
Score = 78 (32.5 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + IR++SGA I++++ DR I+G+ A+ LI
Sbjct: 287 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 339
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 106 (42.4 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
+ +V P + G +IGKGG IK IR SGA I +D+ + ++ +IT+T + D I+
Sbjct: 353 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ--DQIQ 410
Query: 368 SMAVEAVLLLQTKI 381
+ A LLQ +
Sbjct: 411 N----AQYLLQNSV 420
Score = 98 (39.6 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 365 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 417
Score = 84 (34.6 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK LR T+T+IK+ + C D VLI G+
Sbjct: 111 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-------CCPHSTDRVVLIGGK 163
Query: 201 SEAVKKAL 208
+ V + +
Sbjct: 164 PDRVVECI 171
Score = 75 (31.5 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 31 KGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPF-PGAKDRVVTI 86
KG++ R+L + G +IG G I +R+ T+ +K+ P + DRVV I
Sbjct: 104 KGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLI 160
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 88 (36.0 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAA 613
A+ VG +IG+AGS ++ IRK SGA I ++ + G+R+ I G+ + A
Sbjct: 296 ADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGSAKANETA 348
Score = 79 (32.9 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 29 DEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
DE+ + + R + G +IGK GK + +R ET + V G DRV+TI
Sbjct: 38 DEEYAQAQLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTI 95
Score = 75 (31.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
+L +R + + G +IGKGG + +R +G + V + V+T+T + I
Sbjct: 45 QLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG--GCEGI 102
Query: 367 -KSMAVEAVLLLQ 378
K+ AV A LL+
Sbjct: 103 SKAYAVVARALLE 115
Score = 70 (29.7 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 306 EELVIR-VLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTK-DNRDECVITV 357
EE+ + + P + +G +IG+ G I IR+ SGA+I + D E + T+
Sbjct: 285 EEIQTQNISIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTI 338
Score = 63 (27.2 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 19/76 (25%), Positives = 34/76 (44%)
Query: 145 LVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAV 204
+V S ++ IIGK G + LR +T +K + H D + I+G E +
Sbjct: 51 IVSSKEAGVIIGKGGKNVADLRDET--GVKAGVSKVVQGVH------DRVLTITGGCEGI 102
Query: 205 KKALFAISAIMYKFSP 220
KA ++ + + +P
Sbjct: 103 SKAYAVVARALLEGAP 118
Score = 60 (26.2 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
I++L N++G +IG+ G IK I+ SG ++
Sbjct: 134 IKLLISHNQMGTIIGRQGLKIKHIQDVSGVRM 165
Score = 50 (22.7 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 14/69 (20%), Positives = 34/69 (49%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ +Q IIG+ G IK ++ + +++ + P + + V + G E
Sbjct: 135 KLLISHNQMGTIIGRQGLKIKHIQDVS--GVRMVAQKEMLPQST-----ERVVEVQGTPE 187
Query: 203 AVKKALFAI 211
+++A++ I
Sbjct: 188 GIQRAVWEI 196
>UNIPROTKB|G3N2N4 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048 KO:K14944
EMBL:DAAA02052552 EMBL:DAAA02052553 RefSeq:XP_001257255.3
Ensembl:ENSBTAT00000065126 GeneID:790874 KEGG:bta:790874
NextBio:20930383 Uniprot:G3N2N4
Length = 385
Score = 103 (41.3 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K+I + SGA + + D N E V+TV+ P+ +
Sbjct: 52 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 109
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 110 K-AVE--LIIQ-KIQED 122
Score = 91 (37.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 35/140 (25%), Positives = 62/140 (44%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
+ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SGE
Sbjct: 51 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQE--RVVTVSGE 104
Query: 201 SEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPILP 260
E +KA + I+ K +ED P + G Y N +LP
Sbjct: 105 PEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP 158
Query: 261 SRSVPS-ILGAARVPDLQGY 279
+ + + +LG A + + +
Sbjct: 159 TAAAAAGLLGHANLAGVAAF 178
Score = 85 (35.0 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+GTP +AA+ LI
Sbjct: 309 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 366
Score = 79 (32.9 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
S + G ++ + V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 286 SAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 335
>UNIPROTKB|F1MBI6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:DAAA02052552
EMBL:DAAA02052553 IPI:IPI01028075 Ensembl:ENSBTAT00000031237
Uniprot:F1MBI6
Length = 389
Score = 103 (41.3 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K+I + SGA + + D N E V+TV+ P+ +
Sbjct: 56 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 113
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 114 K-AVE--LIIQ-KIQED 126
Score = 92 (37.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 35/141 (24%), Positives = 63/141 (44%)
Query: 140 EECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISG 199
++ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SG
Sbjct: 54 KQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQE--RVVTVSG 107
Query: 200 ESEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPIL 259
E E +KA + I+ K +ED P + G Y N +L
Sbjct: 108 EPEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVL 161
Query: 260 PSRSVPS-ILGAARVPDLQGY 279
P+ + + +LG A + + +
Sbjct: 162 PTAAAAAGLLGHANLAGVAAF 182
Score = 85 (35.0 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+GTP +AA+ LI
Sbjct: 313 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 370
Score = 79 (32.9 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
S + G ++ + V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 290 SAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 339
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 105 (42.0 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 151
Query: 361 ESPDDIKSMAVE-AVLLLQT 379
P I + V++L++
Sbjct: 152 --PQSIIECVKQICVVMLES 169
Score = 79 (32.9 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITL 61
Score = 58 (25.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +IIGK G ++K++R ++ I + SE +C + + ++G +
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINI-----SEG--NCP---ERIITLAGPTN 66
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA FA+ I+ K EDI T
Sbjct: 67 AIFKA-FAM--IIDKLE--EDISSSMT 88
>UNIPROTKB|F1NP94 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:AADN02003296 EMBL:AADN02003297 EMBL:AADN02003298
EMBL:AADN02003299 EMBL:AADN02003300 EMBL:AADN02003301
EMBL:AADN02003302 EMBL:AADN02003303 EMBL:AADN02003304
EMBL:AADN02003305 EMBL:AADN02003306 EMBL:AADN02003307
EMBL:AADN02003308 EMBL:AADN02003309 EMBL:AADN02003310
EMBL:AADN02003311 EMBL:AADN02003312 EMBL:AADN02003313
EMBL:AADN02003314 EMBL:AADN02003315 IPI:IPI00584544
Ensembl:ENSGALT00000016013 ArrayExpress:F1NP94 Uniprot:F1NP94
Length = 413
Score = 103 (41.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K+I + SGA + + D N E V+TV+ P+ +
Sbjct: 80 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 137
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 138 K-AVE--LIIQ-KIQED 150
Score = 91 (37.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 35/140 (25%), Positives = 62/140 (44%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
+ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SGE
Sbjct: 79 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQE--RVVTVSGE 132
Query: 201 SEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPILP 260
E +KA + I+ K +ED P + G Y N +LP
Sbjct: 133 PEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP 186
Query: 261 SRSVPS-ILGAARVPDLQGY 279
+ + + +LG A + + +
Sbjct: 187 TAAAAAGLLGHANLAGVAAF 206
Score = 85 (35.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+GTP +AA+ LI
Sbjct: 337 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 394
Score = 79 (32.9 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
S + G ++ + V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 314 SAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 363
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 115 (45.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 67/316 (21%), Positives = 124/316 (39%)
Query: 132 NDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEF 191
++ K E+ +IL +S +IGK G +K++ T T I ++P + T
Sbjct: 240 DETKSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISP--LQDLT---IYNP 294
Query: 192 DNFVLISGESEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGL 251
+ + + G +EA A I M K + + ++A G+
Sbjct: 295 ERTITVKGSTEACSNAEVEI---MKKLREAYENDIVAVNQQANLIPGLNLSAL-----GI 346
Query: 252 YPNADPILPSRSVPSILGAARVPDLQGYADTGNTWPVYSTGLSLVSGLVGASQS-----E 306
+ +LPS + GAA +A + Y +GL S VGA E
Sbjct: 347 FSTGLSMLPSSA--GARGAAAAAPYHPFASSS----AYLSGLYGASP-VGAFPHQHPLPE 399
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD-NRDECVITVTAIESPD- 364
+ V+ + P +G +IGK G IK + + +GA I + + + E ++ +T P+
Sbjct: 400 QEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITG--PPEA 457
Query: 365 DIKSMA-VEAVLLLQTKINDEDDDTVTIRLLVXXXXXXXXXXXXXXXXNEIRKRTKADVR 423
K+ + L + N +++ + + V NE++ T A+V
Sbjct: 458 QFKAQGRIFGKLKEENFFNPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVI 517
Query: 424 ISKGDKPKCADANDEL 439
+ + P D N+E+
Sbjct: 518 VPRDQTP---DENEEV 530
Score = 93 (37.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 301 GASQSEEL--VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVT 358
G+SQ ++L +R+L P +G +IGK G TIK++ + + +++D+ K+N +T
Sbjct: 158 GSSQPKQLDFPLRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIH-RKENAGAAEKPIT 216
Query: 359 AIESPDDIKSMAVEAVLLLQTKINDEDDDTVTIRLLV 395
+P+ S A +L + K DE I L +
Sbjct: 217 IHATPEGC-SEACRMILDIMQKEADETKSAEEIPLKI 252
Score = 85 (35.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG-DRVALISGTPEQKRAAENLI 617
AVG +IGK G ++ + + +GA+I+++ ++ +R+ +I+G PE + A+ I
Sbjct: 411 AVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQFKAQGRI 465
Score = 76 (31.8 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV-DPFPGAKDRVVTIYS 88
R+L P +G++IGK G I ++ ++T+++V + GA ++ +TI++
Sbjct: 170 RMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGAAEKPITIHA 219
>UNIPROTKB|F1SGT5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:CT826400 Ensembl:ENSSSCT00000031969 Uniprot:F1SGT5
Length = 417
Score = 103 (41.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K+I + SGA + + D N E V+TV+ P+ +
Sbjct: 84 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 141
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 142 K-AVE--LIIQ-KIQED 154
Score = 91 (37.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 35/140 (25%), Positives = 62/140 (44%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
+ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SGE
Sbjct: 83 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK----PDGINLQE--RVVTVSGE 136
Query: 201 SEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPILP 260
E +KA + I+ K +ED P + G Y N +LP
Sbjct: 137 PEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP 190
Query: 261 SRSVPS-ILGAARVPDLQGY 279
+ + + +LG A + + +
Sbjct: 191 TAAAAAGLLGHANLAGVAAF 210
Score = 85 (35.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+GTP +AA+ LI
Sbjct: 341 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 398
Score = 79 (32.9 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
S + G ++ + V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 318 SAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 367
>UNIPROTKB|B7Z770 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003729 GO:GO:0000398 IPI:IPI00019244
UniGene:Hs.31588 HGNC:HGNC:7886 HOVERGEN:HBG082048 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 EMBL:AK301526 ProteinModelPortal:B7Z770
SMR:B7Z770 STRING:B7Z770 PRIDE:B7Z770 Ensembl:ENST00000267422
ArrayExpress:B7Z770 Bgee:B7Z770 Uniprot:B7Z770
Length = 385
Score = 102 (41.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K++ + SGA + + D N E V+TV+ P+ +
Sbjct: 52 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 109
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 110 K-AVE--LIIQ-KIQED 122
Score = 90 (36.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 35/140 (25%), Positives = 62/140 (44%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
+ +I+VP+S + IIGK GAT+K + ++ ++++ K P E V +SGE
Sbjct: 51 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK----PDGINLQE--RVVTVSGE 104
Query: 201 SEAVKKALFAISAIMYKFSPREDIPLETTVREAXXXXXXXXXXXXXXXGGLYPNADPILP 260
E +KA + I+ K +ED P + G Y N +LP
Sbjct: 105 PEQNRKA---VELIIQKI--QED-PQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP 158
Query: 261 SRSVPS-ILGAARVPDLQGY 279
+ + + +LG A + + +
Sbjct: 159 TAAAAAGLLGHANLAGVAAF 178
Score = 85 (35.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 563 NAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLI 617
N VG ++GK G L ++++GA I++S +R I+GTP +AA+ LI
Sbjct: 309 NLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLI 366
Score = 79 (32.9 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
S + G ++ + V+ + P N +G ++GKGG T+ ++ +GA+I +
Sbjct: 286 SAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 335
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
+ +V P + G +IGKGG IK IR SGA I +D+ + ++ +IT+T + D I+
Sbjct: 324 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ--DQIQ 381
Query: 368 SMAVEAVLLLQTKI 381
+ A LLQ +
Sbjct: 382 N----AQYLLQNSV 391
Score = 98 (39.6 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IGK G + IR SGA+I++ + DR+ I+GT +Q + A+ L+Q
Sbjct: 336 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 388
Score = 85 (35.0 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVT-PKDASEPTHSCAMEFDNFVLISGES 201
Q+ +P + +IIGK G IK++R ++ SIK+ P + SE D + I+G
Sbjct: 327 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE---------DRIITITGTQ 377
Query: 202 EAVKKALFAISAIMYKFS 219
+ ++ A + + + ++S
Sbjct: 378 DQIQNAQYLLQNSVKQYS 395
Score = 83 (34.3 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 305 SEELV-IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTA-IES 362
++E+V +R+L G VIGKGG IK++R A + V D+ E +++++A IE+
Sbjct: 13 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISADIET 70
Query: 363 PDDI 366
+I
Sbjct: 71 IGEI 74
Score = 81 (33.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 30/97 (30%), Positives = 45/97 (46%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E E +IL+ S + +IGK G IK LR+ S+ V P D+S P ++ D I
Sbjct: 15 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-P-DSSGPERILSISAD----I 68
Query: 198 SGESEAVKKALFAISAIMYKFSPR--EDIPLETTVRE 232
E +KK + + + SP +PLE+ E
Sbjct: 69 ETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVE 105
Score = 79 (32.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
K + +E V RIL G+VIGK GK I ++R + A V V D +R+++I
Sbjct: 8 KRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSI 64
>UNIPROTKB|F1MX51 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:DAAA02008247
EMBL:DAAA02008246 IPI:IPI00698543 Ensembl:ENSBTAT00000011751
Uniprot:F1MX51
Length = 602
Score = 92 (37.4 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 313 LCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVITVTAIESPDDI 366
+ P K G +IGKGG TIKSI Q SGA+I++ + N D + T +P I
Sbjct: 339 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQI 393
Score = 81 (33.6 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAE 614
AVG VIG+ G + I+ +G I+ + DR+A I+G P++ + AAE
Sbjct: 243 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAE 294
Score = 80 (33.2 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDR 82
Y++ PDG++G +IG+ G+ I+ I+QE+ ++++ G +R
Sbjct: 65 YKV--PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPER 106
Score = 79 (32.9 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGD---RVALISGTPEQKRAAENLIQ 618
G +IGK G + +I + SGA IE+ + D ++ I GTP+Q A LI+
Sbjct: 346 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 401
Score = 59 (25.8 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIK-VTPKDASEPTHSCAMEFDNFVLISGES 201
+I++P+S+ A ++GK G TI S+ R +K V +D + T + D + I+G+
Sbjct: 147 EIMIPASK-AGLVGKGGETINN--SEERAGVKMVMIQDGPQNTGA-----DKPLRITGDP 198
Query: 202 EAVKKA 207
V++A
Sbjct: 199 YKVQQA 204
Score = 56 (24.8 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 312 VLCPFNKIGRVIGKGGGTIKSIRQASGAQ-IDVDDTKDN 349
++ P +K G ++GKGG TI + + +G + + + D N
Sbjct: 148 IMIPASKAG-LVGKGGETINNSEERAGVKMVMIQDGPQN 185
Score = 53 (23.7 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
I V P +G VIG+ G IK I+ +G +I + + +T P D
Sbjct: 235 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITG---PPDRCQH 291
Query: 370 AVEAV 374
A E +
Sbjct: 292 AAEII 296
Score = 53 (23.7 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 140 EECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
E + +P +IG+ G IK++++ I+ P D + P
Sbjct: 233 EGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTP 276
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 102 (41.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 29/94 (30%), Positives = 47/94 (50%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + + ++ P ++ G +IGKGG IK IR+++G Q+ V D N E IT+ I
Sbjct: 80 AASRPRVTVWLVVPASQCGSLIGKGGCKIKEIRESTGVQVQVAGDMLPNSTERAITIAGI 139
Query: 361 ESPDDIKSMAVEAVLLLQTKINDEDDDTVTIRLL 394
P I V+ + ++ K + VTI L
Sbjct: 140 --PQSIIE-CVKQICVVMLKTLSQSPKGVTIPYL 170
Score = 74 (31.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
R+L +GS+IGK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 7 RLLMHGKEVGSIIGKDGESVKKMRKESGARISISEG--NCPERIITL 51
Score = 61 (26.5 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCA--MEFDNFVLISGE 200
++L+ + +IIGK G ++K++R ++ I ++ + E + A F +F +I +
Sbjct: 7 RLLMHGKEVGSIIGKDGESVKKMRKESGARISISEGNCPERIITLAGPTNFKSFAMIIDK 66
Query: 201 SE 202
E
Sbjct: 67 LE 68
>UNIPROTKB|F1LT74 [details] [associations]
symbol:F1LT74 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 IPI:IPI00568045
Ensembl:ENSRNOT00000050969 OMA:YNISMIA Uniprot:F1LT74
Length = 320
Score = 96 (38.9 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 32/109 (29%), Positives = 49/109 (44%)
Query: 274 PDLQGYADT-GNT-WPVYSTGLSLVSGLVGASQSEELVIRVLC-PFNKIGRVIGKGGGTI 330
PDL T GNT + + V G +G +S + L P + IG +IG+ G I
Sbjct: 208 PDLTKLHQTHGNTGFSGIESSSPEVKGYLGLDESAQTTSHELTLPNDLIGCIIGRQGAKI 267
Query: 331 KSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLLLQT 379
IRQ SGAQI + + + +T+T + + + A L +T
Sbjct: 268 NEIRQMSGAQIKTANPVEGSTDRQVTITGPAASISLAQYLINARLSSET 316
Score = 87 (35.7 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVI 355
S + ++ + + V+ P ++ G +IGKG TIK IR+++GAQ+ + N E I
Sbjct: 87 SSMTNSTAASRPPVTVV-PASQCGSLIGKG--TIKEIRESTGAQVQAAGNMLPNSTERAI 143
Query: 356 TVTAIESPDDIKSMAVEAVLLLQT 379
T+ I P I+ + V++L+T
Sbjct: 144 TIAGI-LPSIIECVKQICVVMLET 166
Score = 78 (32.5 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ G+ + IR++SGA I+ ++ DR I+G A+ LI A
Sbjct: 256 IGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGPAASISLAQYLINA 310
Score = 56 (24.8 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+I KS + + + QE AR+ + + +R++T+
Sbjct: 10 EGGLNVTLTIRLLMHGKEVGSIIRKSRESVKKL-QEKSARINISEG--NCPERIITL 63
Score = 56 (24.8 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 145 LVPSSQSANIIGKAGATIKRLRSKTRTSIK 174
+VP+SQ ++IGK TIK +R T ++
Sbjct: 102 VVPASQCGSLIGKG--TIKEIRESTGAQVQ 129
Score = 48 (22.0 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +II K+ ++K+L+ K S ++ + + P + + ++G +
Sbjct: 20 RLLMHGKEVGSIIRKSRESVKKLQEK---SARINISEGNCP--------ERIITLAGPTN 68
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA FA+ I+ K P EDI T
Sbjct: 69 AIFKA-FAM--IIDK--PEEDISSSMT 90
>WB|WBGene00013347 [details] [associations]
symbol:Y59A8B.10 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 eggNOG:NOG258094
KO:K14944 EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10
CTD:180183 HSSP:P51513 RefSeq:NP_001256769.1
ProteinModelPortal:Q9GRY9 SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9
MINT:MINT-1109012 STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9
EnsemblMetazoa:Y59A8B.10a UCSC:Y59A8B.10 WormBase:Y59A8B.10a
HOGENOM:HOG000017831 InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344
ArrayExpress:Q9GRY9 Uniprot:Q9GRY9
Length = 413
Score = 139 (54.0 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 44/184 (23%), Positives = 82/184 (44%)
Query: 3 DSGKRYRSQRDNDR-DGK-NQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVIN 60
DS + +R D DG N+K ++E G+ S+ +IL P +G++IGK G+ +
Sbjct: 8 DSKTQQGVKRTQDASDGPANKKAHFGGEEEGGDHLSI--KILIPSNAVGAIIGKGGEAMR 65
Query: 61 SIRQETRARVKVV---DPFPGAKDRVVTIYSHXXXXXXXXXXXXXXXXXPLCAAQDALLK 117
+++ + RV++ + +PG +R+ + + QD K
Sbjct: 66 NLKNDNNCRVQMSKNSETYPGTSERICLVKGRLNNIMAVIE-----------SIQD---K 111
Query: 118 VHXXXXXXXXXXTDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP 177
+ + K E +I++P++ + +IGK+GA IK +R + I+V P
Sbjct: 112 IREKCADQGGSDAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYP 171
Query: 178 KDAS 181
K S
Sbjct: 172 KAGS 175
>UNIPROTKB|Q9GRY9 [details] [associations]
symbol:Y59A8B.10 "Protein Y59A8B.10, isoform a"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00650000093048 eggNOG:NOG258094 KO:K14944
EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10 CTD:180183
HSSP:P51513 RefSeq:NP_001256769.1 ProteinModelPortal:Q9GRY9
SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9 MINT:MINT-1109012
STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9 EnsemblMetazoa:Y59A8B.10a
UCSC:Y59A8B.10 WormBase:Y59A8B.10a HOGENOM:HOG000017831
InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344 ArrayExpress:Q9GRY9
Uniprot:Q9GRY9
Length = 413
Score = 139 (54.0 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 44/184 (23%), Positives = 82/184 (44%)
Query: 3 DSGKRYRSQRDNDR-DGK-NQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVIN 60
DS + +R D DG N+K ++E G+ S+ +IL P +G++IGK G+ +
Sbjct: 8 DSKTQQGVKRTQDASDGPANKKAHFGGEEEGGDHLSI--KILIPSNAVGAIIGKGGEAMR 65
Query: 61 SIRQETRARVKVV---DPFPGAKDRVVTIYSHXXXXXXXXXXXXXXXXXPLCAAQDALLK 117
+++ + RV++ + +PG +R+ + + QD K
Sbjct: 66 NLKNDNNCRVQMSKNSETYPGTSERICLVKGRLNNIMAVIE-----------SIQD---K 111
Query: 118 VHXXXXXXXXXXTDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP 177
+ + K E +I++P++ + +IGK+GA IK +R + I+V P
Sbjct: 112 IREKCADQGGSDAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYP 171
Query: 178 KDAS 181
K S
Sbjct: 172 KAGS 175
>UNIPROTKB|E1C3A9 [details] [associations]
symbol:HDLBP "Vigilin" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0003723
GeneTree:ENSGT00690000102206 OMA:YEKNTEA EMBL:AADN02024240
EMBL:AADN02024241 EMBL:AADN02024242 EMBL:AADN02024243
IPI:IPI00820163 Ensembl:ENSGALT00000009355 ArrayExpress:E1C3A9
Uniprot:E1C3A9
Length = 1267
Score = 90 (36.7 bits), Expect = 2.9e-05, Sum P(5) = 2.9e-05
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 322 VIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLLLQTKI 381
+IGKGGG I+ +R +GA+I + T +++D+ +IT+ E + +K E L++
Sbjct: 741 LIGKGGGNIRKVRDNTGARI-IFPTSEDKDQELITIMGTE--EAVKEAQKELEALIKNLD 797
Query: 382 NDEDDDTV 389
N +D V
Sbjct: 798 NVVEDSMV 805
Score = 84 (34.6 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+V+ LV S S + + + F+K +IGKGG IK IR+ S +ID+ N + V
Sbjct: 572 MVADLVENSFS--ISVPIFKQFHK--NIIGKGGANIKKIREESNTKIDLPAENSNSETIV 627
Query: 355 IT 356
IT
Sbjct: 628 IT 629
Score = 82 (33.9 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
++K+K+ + V SQ +IG G +++ + KT S+++ P D+S T
Sbjct: 288 EEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILEKTGVSVEIPPTDSSSET-------- 339
Query: 193 NFVLISGESEAVKKALFAISAIMYKFS 219
V++ GE E + +AL + A F+
Sbjct: 340 --VILRGEPEKLGQALTEVYAKANSFT 364
Score = 70 (29.7 bits), Expect = 0.00038, Sum P(5) = 0.00038
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEPT 184
NIIGK GA IK++R ++ T I + ++++ T
Sbjct: 594 NIIGKGGANIKKIREESNTKIDLPAENSNSET 625
Score = 69 (29.3 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
+IGK G N+ +R +GA I S+ + + I GT E + A+ ++A I
Sbjct: 741 LIGKGGGNIRKVRDNTGARIIFPTSED-KDQELITIMGTEEAVKEAQKELEALI 793
Score = 53 (23.7 bits), Expect = 2.9e-05, Sum P(5) = 2.9e-05
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 567 KVIGKAGSNLANIRKISGATIEM--SDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
K+IG+ G+ + IR I+ D +S D++ I+G + AA + I +
Sbjct: 1065 KIIGRKGAVITQIRTEHEVNIQFPDKDDESQAQDQIT-ITGYEKNAEAARDAIMKIV 1120
Score = 50 (22.7 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 590 SDSKSSRGDRVALISGTPEQKRAAENLIQAFIMAT 624
+D S R + +ISG E+ AA+ +QA + T
Sbjct: 939 ADPSSPRKCDIIIISGRREKCEAAKEALQALVPVT 973
Score = 44 (20.5 bits), Expect = 4.2e-06, Sum P(4) = 4.2e-06
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP 75
VIGK+G+ + + +T ++++ P
Sbjct: 164 VIGKNGEKLQDLELKTATKIQIPRP 188
Score = 44 (20.5 bits), Expect = 2.9e-05, Sum P(5) = 2.9e-05
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVT 85
E+D++ E + ++ P + G K+++ + Q+T R+ + P + V T
Sbjct: 217 EQDKRAVERLDVEKVYHP-----FIAGPYNKLVSELMQDTGTRINIPPPSVNKTEIVFT 270
Score = 41 (19.5 bits), Expect = 0.00071, Sum P(5) = 0.00071
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
+IGK+G IN I+ + V++ P K ++ I
Sbjct: 449 LIGKNGANINRIKDLYKVSVRI--PPDNEKSNLIRI 482
Score = 41 (19.5 bits), Expect = 0.00071, Sum P(5) = 0.00071
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 50 SVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
++IG+ G+ I IR++ V + P P K +V +
Sbjct: 520 TIIGQKGERIREIREKF-PEVIINFPDPAHKSDIVQL 555
Score = 38 (18.4 bits), Expect = 2.9e-05, Sum P(5) = 2.9e-05
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 419 KADVRISKGDKPKCADANDEL 439
K D+ I G + KC A + L
Sbjct: 946 KCDIIIISGRREKCEAAKEAL 966
>WB|WBGene00016489 [details] [associations]
symbol:C36E6.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096
Pfam:PF09005 GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080802
GeneID:181773 KEGG:cel:CELE_C36E6.1 CTD:181773 HOGENOM:HOG000018892
RefSeq:NP_510825.1 ProteinModelPortal:Q9BLA0 SMR:Q9BLA0
STRING:Q9BLA0 PaxDb:Q9BLA0 PRIDE:Q9BLA0 EnsemblMetazoa:C36E6.1b
UCSC:C36E6.1a WormBase:C36E6.1b InParanoid:Q9BLA0 OMA:IQLIQEN
NextBio:915282 ArrayExpress:Q9BLA0 Uniprot:Q9BLA0
Length = 641
Score = 100 (40.3 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 41/163 (25%), Positives = 69/163 (42%)
Query: 22 KRRINEKDEKGNEESVIYRILCP--DGVIGSVIGKSGKVINSIRQETRARVKV-VDPFPG 78
KR + D + ++ +I ++ P + +G VIG++G + +I Q++ RV+V V P
Sbjct: 38 KRPREDTDHRMDQNGLIVKVAVPVPEQCVGLVIGRNGAEVQAISQKSGCRVQVTVQP-SS 96
Query: 79 AKDRVVTIYS------HXXXXXXXXXXXXXXXXXPLCAAQDALLKVHXXXXXXXXXXTDN 132
R+V IY PLC Q VH D
Sbjct: 97 TGFRLVEIYGIPENIERAKAYISEVVTRGTRQPGPLC--QPV---VHVQTHGIKSPVVDQ 151
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
K E I +P+++ IIGK G +++LRS T ++++
Sbjct: 152 GDPSKITIE--IPIPANKCGAIIGKGGEQMRKLRSWTNCNVQL 192
Score = 87 (35.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 27/85 (31%), Positives = 40/85 (47%)
Query: 283 GNTWPVYSTGLSLVSGLVGASQSEE----LVIRVLCPFNKIGRVIGKGGGTIKSIRQASG 338
GN VY L+ +V A+ ++ ++ P +K G VIG+GG TIK I Q SG
Sbjct: 298 GNKNKVYVCA-QLIKAIVEANSEAANAPVVLFYMVIPASKCGLVIGRGGETIKQINQESG 356
Query: 339 AQIDVD-DTKDNRDECVITVTAIES 362
A ++ D N E + E+
Sbjct: 357 AHCELSRDPNTNPIEKTFVIRGSEA 381
Score = 73 (30.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPEQKRAAENLIQ 618
A+ G VIG+ G + I + SGA E+S D ++ ++ +I G+ Q A++LI+
Sbjct: 334 ASKCGLVIGRGGETIKQINQESGAHCELSRDPNTNPIEKTFVIRGSEAQVEHAKHLIR 391
Score = 61 (26.5 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
Q+ VP I+G G IK+L +T T I+ P D
Sbjct: 249 QVKVPRCTVGAIMGLQGKNIKKLSDETGTKIQFLPDD 285
Score = 59 (25.8 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVV 73
++G+ + I P G++IGK G+ + +R T V+++
Sbjct: 150 DQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTNCNVQLL 193
>UNIPROTKB|F1LXN9 [details] [associations]
symbol:F1LXN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 IPI:IPI00777906
Ensembl:ENSRNOT00000017403 Uniprot:F1LXN9
Length = 376
Score = 87 (35.7 bits), Expect = 6.6e-06, Sum P(3) = 6.6e-06
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 566 GKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618
G +IG+ G + I SGA+I+ + + S DR+ +I+GT +Q + A+ L+Q
Sbjct: 311 GSIIGEGGQRIKQICHESGASIKTDELEGSE-DRIIIITGTQDQIQNAQYLLQ 362
Score = 82 (33.9 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIK 367
+ ++ P + G +IG+GG IK I SGA I D+ + + D +I +T + D I+
Sbjct: 299 ITTQITIPKDLTGSIIGEGGQRIKQICHESGASIKTDELEGSEDRIII-ITGTQ--DQIQ 355
Query: 368 SMAVEAVLLLQTKI 381
+ A LLQ +
Sbjct: 356 N----AQYLLQNSV 365
Score = 75 (31.5 bits), Expect = 6.6e-06, Sum P(3) = 6.6e-06
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E +L+ S + IIG GA +K LR T+T++K + C D VLI G+
Sbjct: 93 ELGLLIQQSLAGGIIGVKGAKVKELRENTQTTVKRFQE-------WCPHSTDRVVLIGGK 145
Query: 201 SEAVKKALFAISAIMYKFSP 220
+ V + + I ++ + SP
Sbjct: 146 PDRVVECIKIIPDLVSE-SP 164
Score = 56 (24.8 bits), Expect = 6.6e-06, Sum P(3) = 6.6e-06
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 26 NEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVD 74
N K + +E V RIL G+VIGK+ I ++R + A + V D
Sbjct: 6 NFKRSRNTDEMVESRILLQSENAGAVIGKN---IKALRTDYSASISVPD 51
>WB|WBGene00022738 [details] [associations]
symbol:ZK418.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080150
HOGENOM:HOG000018892 PIR:T27855 RefSeq:NP_001023000.1
ProteinModelPortal:Q23487 SMR:Q23487 STRING:Q23487 PaxDb:Q23487
PRIDE:Q23487 EnsemblMetazoa:ZK418.9a GeneID:175989
KEGG:cel:CELE_ZK418.9 UCSC:ZK418.9b.2 CTD:175989 WormBase:ZK418.9a
InParanoid:Q23487 OMA:NCTIEGP NextBio:890626 ArrayExpress:Q23487
Uniprot:Q23487
Length = 557
Score = 80 (33.2 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 301 GASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASG 338
GA+ E + +L P +KIG VIGKGG TI+ +++ SG
Sbjct: 132 GAAPGE-VTEEMLIPADKIGLVIGKGGETIRIVQEQSG 168
Score = 78 (32.5 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
+++VP + IIGK G IKRL ++T T I+ P + P D +I G +
Sbjct: 243 EVIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPD--TNPNSE-----DRIAVIMGTRD 295
Query: 203 AVKKALFAISAIM 215
+ +A I+ I+
Sbjct: 296 QIYRATERITEIV 308
Score = 77 (32.2 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPEQ-KRAAENLIQ 618
+ G +IGK G + + +G I+ D+ + DR+A+I GT +Q RA E + +
Sbjct: 250 SAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVIMGTRDQIYRATERITE 306
Score = 72 (30.4 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 298 GLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVI 355
G G + + + P K G VIGKGG IK I + +GA + + N DE V
Sbjct: 322 GSAGTVLPGQSIFYMHVPAGKCGLVIGKGGENIKQIERETGATCGLAPAAEQKNEDEKVF 381
Query: 356 TV 357
+
Sbjct: 382 EI 383
Score = 70 (29.7 bits), Expect = 3.3e-05, Sum P(3) = 3.3e-05
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD--RVALISGTPEQKRAAENLIQ 618
A G VIGK G N+ I + +GAT ++ + + + +V I G+ Q A +L++
Sbjct: 340 AGKCGLVIGKGGENIKQIERETGATCGLAPAAEQKNEDEKVFEIKGSQLQIHHASHLVR 398
Score = 68 (29.0 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 32 GNEESV--IYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDP 75
G+ + + IY + P+ V+G VIGK G I I+Q + RV++ DP
Sbjct: 49 GDSDKITDIYPV--PEKVVGLVIGKGGSEIRLIQQTSGCRVQM-DP 91
Score = 67 (28.6 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 298 GLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD-DTKDNRDECVIT 356
G GA +++ V+ P G +IGKGG IK + +G +I DT N ++ +
Sbjct: 231 GGYGAQEAQAKG-EVIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAV 289
Query: 357 V 357
+
Sbjct: 290 I 290
Score = 49 (22.3 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKT 169
++L+P+ + +IGK G TI+ ++ ++
Sbjct: 141 EMLIPADKIGLVIGKGGETIRIVQEQS 167
Score = 46 (21.3 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 146 VPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDAS-EPTHSCAME 190
VP +IGK G+ I+ ++ + +++ P S +C +E
Sbjct: 60 VPEKVVGLVIGKGGSEIRLIQQTSGCRVQMDPDHQSVNGFRNCTIE 105
>RGD|1311196 [details] [associations]
symbol:Tdrkh "tudor and KH domain containing" species:10116
"Rattus norvegicus" [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1311196 GO:GO:0003723 EMBL:CH474015 eggNOG:NOG262512
HOGENOM:HOG000037932 OrthoDB:EOG4T4CV4 UniGene:Rn.98848
EMBL:BC059161 IPI:IPI00370637 SMR:Q6PCT7 UCSC:RGD:1311196
HOVERGEN:HBG062756 InParanoid:Q6PCT7 Genevestigator:Q6PCT7
Uniprot:Q6PCT7
Length = 296
Score = 96 (38.9 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAV 374
P +GR+IG+GG TI+SI +ASGA+I D K++ +++ I+ K +A
Sbjct: 132 PQRSVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLS-RLIKISGTQKEVAAAKH 188
Query: 375 LLLQTKINDED 385
L+L+ DE+
Sbjct: 189 LILEKVSEDEE 199
Score = 92 (37.4 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 306 EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD 365
+++ I + P + +IG+ G IK +R+ +GA+IDVD T+D DE V+ ++
Sbjct: 51 DDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVD-TEDVGDERVLLISGFPVQVC 109
Query: 366 IKSMAVEAVLLLQTKINDE 384
A+ +L T + ++
Sbjct: 110 KAKAAIHQILTENTPVFEQ 128
Score = 84 (34.6 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG----DRVALISGTPEQKRAAENLI 617
+VG++IG+ G + +I K SGA I K S G R+ ISGT ++ AA++LI
Sbjct: 135 SVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLSRLIKISGTQKEVAAAKHLI 190
Score = 80 (33.2 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++ VP IIG+ GA IK+LR +T I V +D + + +LISG
Sbjct: 54 EIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGD---------ERVLLISGF 104
Query: 201 SEAVKKALFAISAIMYKFSP 220
V KA AI I+ + +P
Sbjct: 105 PVQVCKAKAAIHQILTENTP 124
Score = 61 (26.5 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 23 RRINEKDEKG----NEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPG 78
RR E E+ E+ + + P + +IG+ G I +R++T AR+ V D
Sbjct: 35 RRYRESREERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV-DTEDV 93
Query: 79 AKDRVVTI 86
+RV+ I
Sbjct: 94 GDERVLLI 101
>UNIPROTKB|J9P026 [details] [associations]
symbol:MEX3B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00390000018714
EMBL:AAEX03002364 EMBL:AAEX03002365 Ensembl:ENSCAFT00000048532
Uniprot:J9P026
Length = 480
Score = 95 (38.5 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
KK EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 74 KKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 122
Score = 86 (35.3 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
+ I+V P+ +G V+G G TIK I+Q + I V ++D E V VT + D
Sbjct: 173 QTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYI-VTPSRDK--EPVFEVTGMPENVDR 229
Query: 367 KSMAVEAVLLLQT----KINDEDD 386
+EA + L+T ++ DE+D
Sbjct: 230 AREEIEAHIALRTGGIIELTDEND 253
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 104 (41.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 302 ASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAI 360
A+ + +R++ P ++ G +IGKGG IK IR+++GAQ+ V D N E IT+ I
Sbjct: 84 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGI 143
Score = 52 (23.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 53 GKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
GK G+ + +R+E+ AR+ + + +R++T+
Sbjct: 22 GKKGESVKKMREESGARINISEG--NCPERIITL 53
>ZFIN|ZDB-GENE-030131-2628 [details] [associations]
symbol:mex3b "mex-3 homolog B (C. elegans)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50089
SMART:SM00184 SMART:SM00322 ZFIN:ZDB-GENE-030131-2628 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
HOVERGEN:HBG071698 KO:K15686 CTD:84206 eggNOG:NOG260228
HOGENOM:HOG000236282 OMA:SPDGCPE OrthoDB:EOG4XPQG9
GeneTree:ENSGT00390000018714 EMBL:CU929131 EMBL:BC131871
IPI:IPI00610368 RefSeq:NP_001074462.1 UniGene:Dr.105567 SMR:A2RRV6
Ensembl:ENSDART00000101537 GeneID:569582 KEGG:dre:569582
NextBio:20889751 Uniprot:A2RRV6
Length = 537
Score = 99 (39.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 131 DNDKKRKEKE--ECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
DN+ ++K EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 48 DNEPRKKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 101
Score = 82 (33.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
+ I+V P+ +G V+G G TIK I+Q + I V ++D E V VT + D
Sbjct: 154 QTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYI-VTPSRDK--EPVFEVTGMPENVDR 210
Query: 367 KSMAVEAVLLLQT----KINDEDD 386
+EA + ++T + DE+D
Sbjct: 211 AREEIEAHIAMRTGGLIEFTDEND 234
>UNIPROTKB|F8VWX1 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01020747
ProteinModelPortal:F8VWX1 SMR:F8VWX1 Ensembl:ENST00000549571
ArrayExpress:F8VWX1 Bgee:F8VWX1 Uniprot:F8VWX1
Length = 173
Score = 86 (35.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVV---DPFPGAKDRVVTI 86
++L P GS+IGK G+ I +++ET A +K+ D +PG +RV I
Sbjct: 16 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI 65
Score = 79 (32.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
++++ P + G +IGKGG T+K++ + SGA + +
Sbjct: 137 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL 170
Score = 75 (31.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP-KD 179
++L+PS + +IIGK G TI +L+ +T +IK++ KD
Sbjct: 16 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 53
Score = 69 (29.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPK 178
+ +I+VP+S + IIGK GAT+K + ++ ++++ K
Sbjct: 136 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK 173
>UNIPROTKB|I3LP40 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 InterPro:IPR002999
GO:GO:0005739 GO:GO:0003723 Pfam:PF00567 PROSITE:PS50304
GeneTree:ENSGT00530000063224 OMA:FHADEYL EMBL:FP340554
Ensembl:ENSSSCT00000032144 Uniprot:I3LP40
Length = 558
Score = 97 (39.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 306 EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD 365
+++ I + P + +IG+ G IK +R+ +GA+IDVD T+D DE V+ ++
Sbjct: 51 DDIEIEMRVPQESVKLIIGRQGANIKQLRKQTGARIDVD-TEDIGDERVLLISGFPVQVC 109
Query: 366 IKSMAVEAVLLLQTKINDE 384
A+ +L T ++++
Sbjct: 110 KAKAAIHQILTENTPVSEQ 128
Score = 97 (39.2 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPD 364
SE+L + P +GR+IG+GG TI+SI +ASGA+I D K++ +++ I+
Sbjct: 126 SEQLSV----PQRSVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLS-RLIKISG 178
Query: 365 DIKSMAVEAVLLLQTKINDED 385
K +A L+L+ DE+
Sbjct: 179 TQKEVAAAKHLILEKVSEDEE 199
Score = 84 (34.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG----DRVALISGTPEQKRAAENLI 617
+VG++IG+ G + +I K SGA I K S G R+ ISGT ++ AA++LI
Sbjct: 135 SVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLSRLIKISGTQKEVAAAKHLI 190
Score = 80 (33.2 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++ VP IIG+ GA IK+LR +T I V +D + + +LISG
Sbjct: 54 EIEMRVPQESVKLIIGRQGANIKQLRKQTGARIDVDTEDIGD---------ERVLLISGF 104
Query: 201 SEAVKKALFAISAIMYKFSP 220
V KA AI I+ + +P
Sbjct: 105 PVQVCKAKAAIHQILTENTP 124
>UNIPROTKB|F1PM07 [details] [associations]
symbol:MEX3B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50089 SMART:SM00184 SMART:SM00322 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000018714 EMBL:AAEX03002364 EMBL:AAEX03002365
Ensembl:ENSCAFT00000021833 Uniprot:F1PM07
Length = 567
Score = 95 (38.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
KK EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 61 KKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 109
Score = 86 (35.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
+ I+V P+ +G V+G G TIK I+Q + I V ++D E V VT + D
Sbjct: 160 QTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYI-VTPSRDK--EPVFEVTGMPENVDR 216
Query: 367 KSMAVEAVLLLQT----KINDEDD 386
+EA + L+T ++ DE+D
Sbjct: 217 AREEIEAHIALRTGGIIELTDEND 240
>UNIPROTKB|Q6ZN04 [details] [associations]
symbol:MEX3B "RNA-binding protein MEX3B" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005509 "calcium ion binding"
evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
[GO:0046777 "protein autophosphorylation" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001841
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50089 SMART:SM00184 SMART:SM00322 Prosite:PS00518
GO:GO:0005634 GO:GO:0005737 GO:GO:0008270 GO:GO:0005509
GO:GO:0046777 GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0000932 HOVERGEN:HBG071698 KO:K15686 EMBL:AY950678
EMBL:AK131424 EMBL:AB095929 EMBL:BC036211 EMBL:BC111545
EMBL:AL136778 IPI:IPI00300213 IPI:IPI00829592 RefSeq:NP_115622.2
UniGene:Hs.104744 HSSP:Q96AE4 ProteinModelPortal:Q6ZN04 SMR:Q6ZN04
IntAct:Q6ZN04 MINT:MINT-1420202 STRING:Q6ZN04 PhosphoSite:Q6ZN04
DMDM:74762391 PaxDb:Q6ZN04 PRIDE:Q6ZN04 DNASU:84206
Ensembl:ENST00000329713 Ensembl:ENST00000558133 GeneID:84206
KEGG:hsa:84206 UCSC:uc002bgq.1 CTD:84206 GeneCards:GC15M082334
HGNC:HGNC:25297 HPA:HPA041093 MIM:611008 neXtProt:NX_Q6ZN04
PharmGKB:PA162395820 eggNOG:NOG260228 HOGENOM:HOG000236282
InParanoid:Q6ZN04 OMA:SPDGCPE OrthoDB:EOG4XPQG9 PhylomeDB:Q6ZN04
GenomeRNAi:84206 NextBio:73616 Bgee:Q6ZN04 CleanEx:HS_MEX3B
Genevestigator:Q6ZN04 Uniprot:Q6ZN04
Length = 569
Score = 95 (38.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
KK EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 61 KKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 109
Score = 86 (35.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
+ I+V P+ +G V+G G TIK I+Q + I V ++D E V VT + D
Sbjct: 160 QTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYI-VTPSRDK--EPVFEVTGMPENVDR 216
Query: 367 KSMAVEAVLLLQT----KINDEDD 386
+EA + L+T ++ DE+D
Sbjct: 217 AREEIEAHIALRTGGIIELTDEND 240
>UNIPROTKB|J9JHU9 [details] [associations]
symbol:MEX3B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50089 SMART:SM00184 SMART:SM00322 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
OMA:SPDGCPE GeneTree:ENSGT00390000018714 EMBL:AAEX03002364
EMBL:AAEX03002365 Ensembl:ENSCAFT00000048946 Uniprot:J9JHU9
Length = 580
Score = 95 (38.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
KK EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 74 KKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 122
Score = 86 (35.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
+ I+V P+ +G V+G G TIK I+Q + I V ++D E V VT + D
Sbjct: 173 QTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYI-VTPSRDK--EPVFEVTGMPENVDR 229
Query: 367 KSMAVEAVLLLQT----KINDEDD 386
+EA + L+T ++ DE+D
Sbjct: 230 AREEIEAHIALRTGGIIELTDEND 253
>UNIPROTKB|P81021 [details] [associations]
symbol:HDLBP "Vigilin" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0003723 eggNOG:NOG313207 EMBL:X65292 IPI:IPI00583171
PIR:S23464 RefSeq:NP_990427.1 UniGene:Gga.6253
ProteinModelPortal:P81021 SMR:P81021 STRING:P81021 PRIDE:P81021
GeneID:395984 KEGG:gga:395984 CTD:3069 HOGENOM:HOG000007687
HOVERGEN:HBG054107 NextBio:20816048 Uniprot:P81021
Length = 1270
Score = 90 (36.7 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 322 VIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLLLQTKI 381
+IGKGGG I+ +R +GA+I + T +++D+ +IT+ E + +K E L++
Sbjct: 742 LIGKGGGNIRKVRDNTGARI-IFPTSEDKDQELITIMGTE--EAVKEAQKELEALIKNLD 798
Query: 382 NDEDDDTV 389
N +D V
Sbjct: 799 NVVEDSMV 806
Score = 85 (35.0 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 23/87 (26%), Positives = 44/87 (50%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
++K+K+ + V SQ +IG+ G +++ + KT S+++ P D+S T
Sbjct: 288 EEKKKKTTTIAVEVKKSQHKYVIGRKGNSLQEILEKTGVSVEIPPTDSSSET-------- 339
Query: 193 NFVLISGESEAVKKALFAISAIMYKFS 219
V++ GE E + +AL + A F+
Sbjct: 340 --VILRGEPEKLGQALTEVYAKANSFT 364
Score = 70 (29.7 bits), Expect = 4.7e-05, Sum P(4) = 4.7e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
+V+ LV S S + + + F+K +IGKGG IK IR+ S +ID+
Sbjct: 572 MVADLVENSFS--ISVPIFKQFHK--NIIGKGGANIKKIREESNTKIDL 616
Score = 69 (29.3 bits), Expect = 4.7e-05, Sum P(4) = 4.7e-05
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
+IGK G N+ +R +GA I S+ + + I GT E + A+ ++A I
Sbjct: 742 LIGKGGGNIRKVRDNTGARIIFPTSED-KDQELITIMGTEEAVKEAQKELEALI 794
Score = 67 (28.6 bits), Expect = 0.00072, Sum P(5) = 0.00072
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFV-LISGESEAVKKALFAI 211
NIIGK GA IK++R ++ T I + ++ + + + V L+ A++K L I
Sbjct: 594 NIIGKGGANIKKIREESNTKIDLPGREQATQRQLLSQGREQTVKLLRHRILAIQKELANI 653
Query: 212 SAI 214
+ +
Sbjct: 654 TEV 656
Score = 53 (23.7 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 567 KVIGKAGSNLANIRKISGATIEM--SDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
K+IG+ G+ + IR I+ D +S D++ I+G + AA + I +
Sbjct: 1068 KIIGRKGAVITQIRTEHEVNIQFPDKDDESQAQDQIT-ITGYEKNAEAARDAIMKIV 1123
Score = 50 (22.7 bits), Expect = 3.5e-05, Sum P(4) = 3.5e-05
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 590 SDSKSSRGDRVALISGTPEQKRAAENLIQAFIMAT 624
+D S R + +ISG E+ AA+ +QA + T
Sbjct: 941 ADPSSPRKCDIIIISGRREKCEAAKEALQALVPVT 975
Score = 44 (20.5 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP 75
VIGK+G+ + + +T ++++ P
Sbjct: 164 VIGKNGEKLQDLELKTATKIQIPRP 188
Score = 44 (20.5 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVT 85
E+D++ E + ++ P + G K+++ + Q+T R+ + P + V T
Sbjct: 217 EQDKRAVERLDVEKVYHP-----FIAGPYNKLVSELMQDTGTRINIPPPSVNKTEIVFT 270
Score = 38 (18.4 bits), Expect = 1.5e-05, Sum P(5) = 1.5e-05
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 419 KADVRISKGDKPKCADANDEL 439
K D+ I G + KC A + L
Sbjct: 948 KCDIIIISGRREKCEAAKEAL 968
>UNIPROTKB|I3LKC4 [details] [associations]
symbol:MEX3D "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50089
SMART:SM00184 SMART:SM00322 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00390000018714 OMA:KAPNPGR EMBL:CU972485
Ensembl:ENSSSCT00000022668 Uniprot:I3LKC4
Length = 593
Score = 95 (38.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
KK EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 113 KKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 161
Score = 86 (35.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 294 SLVSGLVGASQSE-----ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
S GL GA+Q + I+V P+ +G V+G G TIK I+Q + I V +D
Sbjct: 194 SKAGGLPGATQGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYI-VTPGRD 252
Query: 349 NRDECVITVTAIESPDDIKSMAVEAVLLLQT 379
E V VT + D +EA + L+T
Sbjct: 253 K--EPVFAVTGMPENVDRAREEIEAHITLRT 281
>UNIPROTKB|B3KM64 [details] [associations]
symbol:PCBP4 "cDNA FLJ10382 fis, clone NT2RM2002088, highly
similar to Poly(rC)-binding protein 4" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HOVERGEN:HBG053520 UniGene:Hs.20930 HGNC:HGNC:8652 EMBL:AK001244
IPI:IPI00788617 SMR:B3KM64 STRING:B3KM64 Ensembl:ENST00000395013
UCSC:uc003dci.2 Uniprot:B3KM64
Length = 243
Score = 98 (39.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G VIG+ GS ++ IR++SGA I++ + G+R I+G+P A+ LI A
Sbjct: 93 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITA 147
Score = 89 (36.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDEC 353
S+V GL +Q+ L P + IG VIG+ G I IRQ SGA I + + + E
Sbjct: 70 SVVPGLDPGTQTSSQ--EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGER 127
Query: 354 VITVTAIESPDDI 366
+T+T SP I
Sbjct: 128 HVTITG--SPVSI 138
Score = 71 (30.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTR 170
++++P+SQ ++IGKAG IK +R T+
Sbjct: 28 RLVIPASQCGSLIGKAGTKIKEIREVTK 55
Score = 63 (27.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVV 84
V R++ P GS+IGK+G I IR+ T+ + P A VV
Sbjct: 25 VTLRLVIPASQCGSLIGKAGTKIKEIREVTKLQQLSSHAVPFATPSVV 72
Score = 62 (26.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQ 340
+ +R++ P ++ G +IGK G IK IR+ + Q
Sbjct: 25 VTLRLVIPASQCGSLIGKAGTKIKEIREVTKLQ 57
>UNIPROTKB|Q9Y2W6 [details] [associations]
symbol:TDRKH "Tudor and KH domain-containing protein"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 GO:GO:0005739 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 EMBL:CH471121 EMBL:AL589765
EMBL:AF119121 EMBL:AF227192 EMBL:BC022467 IPI:IPI00009982
IPI:IPI01013931 RefSeq:NP_001077432.1 RefSeq:NP_001077433.1
RefSeq:NP_001077434.1 RefSeq:NP_006853.2 UniGene:Hs.144439 PDB:2DIQ
PDB:3FDR PDBsum:2DIQ PDBsum:3FDR ProteinModelPortal:Q9Y2W6
SMR:Q9Y2W6 DIP:DIP-59459N STRING:Q9Y2W6 PhosphoSite:Q9Y2W6
DMDM:39932455 PaxDb:Q9Y2W6 PRIDE:Q9Y2W6 DNASU:11022
Ensembl:ENST00000368822 Ensembl:ENST00000368824
Ensembl:ENST00000368825 Ensembl:ENST00000368827
Ensembl:ENST00000458431 GeneID:11022 KEGG:hsa:11022 UCSC:uc001eyy.2
CTD:11022 GeneCards:GC01M151745 HGNC:HGNC:11713 HPA:HPA016419
HPA:HPA019625 MIM:609501 neXtProt:NX_Q9Y2W6 PharmGKB:PA36431
eggNOG:NOG262512 HOGENOM:HOG000037932 HOVERGEN:HBG055309
InParanoid:Q9Y2W6 OMA:FHADEYL OrthoDB:EOG4T4CV4 PhylomeDB:Q9Y2W6
EvolutionaryTrace:Q9Y2W6 GenomeRNAi:11022 NextBio:41878
ArrayExpress:Q9Y2W6 Bgee:Q9Y2W6 CleanEx:HS_TDRKH
Genevestigator:Q9Y2W6 GermOnline:ENSG00000182134 Uniprot:Q9Y2W6
Length = 561
Score = 97 (39.2 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPD 364
SE+L + P +GR+IG+GG TI+SI +ASGA+I D K++ +++ I+
Sbjct: 126 SEQLSV----PQRSVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLS-RLIKISG 178
Query: 365 DIKSMAVEAVLLLQTKINDED 385
K +A L+L+ DE+
Sbjct: 179 TQKEVAAAKHLILEKVSEDEE 199
Score = 96 (38.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 306 EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD 365
+++ I + P + +IG+ G IK +R+ +GA+IDVD T+D DE V+ ++
Sbjct: 51 DDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVD-TEDVGDERVLLISGFPVQVC 109
Query: 366 IKSMAVEAVLLLQTKINDE 384
A+ +L T ++++
Sbjct: 110 KAKAAIHQILTENTPVSEQ 128
Score = 84 (34.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG----DRVALISGTPEQKRAAENLI 617
+VG++IG+ G + +I K SGA I K S G R+ ISGT ++ AA++LI
Sbjct: 135 SVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLSRLIKISGTQKEVAAAKHLI 190
Score = 80 (33.2 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++ VP IIG+ GA IK+LR +T I V +D + + +LISG
Sbjct: 54 EIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGD---------ERVLLISGF 104
Query: 201 SEAVKKALFAISAIMYKFSP 220
V KA AI I+ + +P
Sbjct: 105 PVQVCKAKAAIHQILTENTP 124
>UNIPROTKB|F1MUI1 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 InterPro:IPR002999
GO:GO:0005739 GO:GO:0003723 Pfam:PF00567 PROSITE:PS50304
GeneTree:ENSGT00530000063224 OMA:FHADEYL EMBL:DAAA02007247
IPI:IPI00703713 Ensembl:ENSBTAT00000028777 Uniprot:F1MUI1
Length = 566
Score = 97 (39.2 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPD 364
SE+L + P +GR+IG+GG TI+SI +ASGA+I D K++ +++ I+
Sbjct: 126 SEQLSV----PQRSVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLS-RLIKISG 178
Query: 365 DIKSMAVEAVLLLQTKINDED 385
K +A L+L+ DE+
Sbjct: 179 TQKEVAAAKHLILEKVSEDEE 199
Score = 96 (38.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 306 EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD 365
+++ I + P + +IG+ G IK +R+ +GA+IDVD T+D DE V+ ++
Sbjct: 51 DDIEIEMRVPQEAVKLIIGRQGANIKQLRKKTGARIDVD-TEDIGDERVLLISGFPVQVC 109
Query: 366 IKSMAVEAVLLLQTKINDE 384
A+ +L T ++++
Sbjct: 110 KAKAAIHQILTENTPVSEQ 128
Score = 84 (34.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG----DRVALISGTPEQKRAAENLI 617
+VG++IG+ G + +I K SGA I K S G R+ ISGT ++ AA++LI
Sbjct: 135 SVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLSRLIKISGTQKEVAAAKHLI 190
Score = 83 (34.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++ VP IIG+ GA IK+LR KT I V +D + + +LISG
Sbjct: 54 EIEMRVPQEAVKLIIGRQGANIKQLRKKTGARIDVDTEDIGD---------ERVLLISGF 104
Query: 201 SEAVKKALFAISAIMYKFSP 220
V KA AI I+ + +P
Sbjct: 105 PVQVCKAKAAIHQILTENTP 124
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 81 (33.6 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 26 NEKDEKGNEESVIY-RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVV 84
N+ D N S ++ R+LC ++G G I+ I+ ET AR+ + + G +R+V
Sbjct: 55 NDHDSPDNVPSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIV 114
Query: 85 TI 86
+
Sbjct: 115 YV 116
Score = 72 (30.4 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
VG VIGK G ++ ++++ +G +I + D +R I GT +AA LI
Sbjct: 342 VGNVIGKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTFMASQAAIMLI 394
Score = 70 (29.7 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 319 IGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLLLQ 378
+G VIGK G I S+++++G I + D + E +T+ + S A A++L+
Sbjct: 342 VGNVIGKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTF----MASQA--AIMLIS 395
Query: 379 TKI 381
KI
Sbjct: 396 NKI 398
Score = 63 (27.2 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 16/71 (22%), Positives = 34/71 (47%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDN-RDECVITVTAIESPDD 365
E+ I +L P + +G +IGK G ++ I S A++ + ++ ++T+ +
Sbjct: 148 EISINLLIPHHLMGCIIGKRGSRLREIEDLSAAKLFASPNQLLLSNDRILTINGVPDAIH 207
Query: 366 IKSMAVEAVLL 376
I + + LL
Sbjct: 208 IATFYISQTLL 218
Score = 63 (27.2 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 19/84 (22%), Positives = 39/84 (46%)
Query: 144 ILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEA 203
+L+P IIGK G+ ++ + + + +P + + D + I+G +A
Sbjct: 153 LLIPHHLMGCIIGKRGSRLREIEDLSAAKLFASP-------NQLLLSNDRILTINGVPDA 205
Query: 204 VKKALFAISAIMYKF---SPREDI 224
+ A F IS + F SP++++
Sbjct: 206 IHIATFYISQTLLNFQMESPQKNV 229
>UNIPROTKB|Q86XN8 [details] [associations]
symbol:MEX3D "RNA-binding protein MEX3D" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0061157 "mRNA destabilization"
evidence=NAS] [GO:0010609 "mRNA localization resulting in
posttranscriptional regulation of gene expression" evidence=NAS]
[GO:0017091 "AU-rich element binding" evidence=IDA] [GO:0042981
"regulation of apoptotic process" evidence=NAS] InterPro:IPR001841
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50089 SMART:SM00184 SMART:SM00322 EMBL:AF458084
Prosite:PS00518 GO:GO:0005634 GO:GO:0048471 GO:GO:0042981
GO:GO:0046872 GO:GO:0008270 GO:GO:0017091 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0061157 HOVERGEN:HBG071698 KO:K15686
eggNOG:NOG260228 HOGENOM:HOG000236282 OrthoDB:EOG4XPQG9
EMBL:AY950680 EMBL:AB107353 EMBL:BC113384 EMBL:BC113741
IPI:IPI00478085 IPI:IPI00783891 RefSeq:NP_001167589.1
RefSeq:NP_976049.3 UniGene:Hs.436495 PDB:2DGR PDBsum:2DGR
ProteinModelPortal:Q86XN8 SMR:Q86XN8 STRING:Q86XN8
PhosphoSite:Q86XN8 DMDM:134047829 PRIDE:Q86XN8
Ensembl:ENST00000402693 GeneID:399664 KEGG:hsa:399664
UCSC:uc010dsn.3 CTD:399664 GeneCards:GC19M001554 HGNC:HGNC:16734
MIM:611009 neXtProt:NX_Q86XN8 PharmGKB:PA162395829
EvolutionaryTrace:Q86XN8 GenomeRNAi:399664 NextBio:105463
ArrayExpress:Q86XN8 Bgee:Q86XN8 CleanEx:HS_MEX3D
Genevestigator:Q86XN8 GermOnline:ENSG00000181588 GO:GO:0010609
Uniprot:Q86XN8
Length = 651
Score = 95 (38.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
KK EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 174 KKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 222
Score = 86 (35.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 294 SLVSGLVGASQSE-----ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
S GL GA+Q + I+V P+ +G V+G G TIK I+Q + I V +D
Sbjct: 255 SKAGGLPGAAQGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYI-VTPGRD 313
Query: 349 NRDECVITVTAIESPDDIKSMAVEAVLLLQT 379
E V VT + D +EA + L+T
Sbjct: 314 K--EPVFAVTGMPENVDRAREEIEAHITLRT 342
>ASPGD|ASPL0000048811 [details] [associations]
symbol:AN2068 species:162425 "Emericella nidulans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0042175 "nuclear outer
membrane-endoplasmic reticulum membrane network" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0034605 "cellular response
to heat" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000032 eggNOG:NOG313207 RefSeq:XP_659672.1
ProteinModelPortal:Q5BBL2 EnsemblFungi:CADANIAT00008738
GeneID:2875227 KEGG:ani:AN2068.2 HOGENOM:HOG000183013 OMA:FPDKGDE
OrthoDB:EOG40ZV5P Uniprot:Q5BBL2
Length = 1305
Score = 101 (40.6 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 139 KEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNF-VLI 197
K+ ++ +P+S +IIGK GA ++ L+ +T ++V P+ A EPT + D VLI
Sbjct: 213 KQSVRVPIPTSARPHIIGKQGAVVQELQQRTGARVQV-PR-AEEPTGDEDEDNDTIDVLI 270
Query: 198 SGESEAVKKALFAISAIM 215
G++ A + A I AI+
Sbjct: 271 EGDAVAAEMARREIEAIV 288
Score = 84 (34.6 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 283 GNTWPVYSTGLSLVSGLVGASQSEELVIRVLCPFNKIGR-VIGKGGGTIKSIRQASGAQI 341
G+T V +L + ASQ +L P K R V+G+GG I SIR+ +G +I
Sbjct: 1206 GSTDNVNKAKAALEKAIAAASQQSATGYLIL-PDPKTYRFVVGQGGSQINSIRKQTGCRI 1264
Query: 342 DVDDTKDN-RDECVITVTAIESPDDIKSMAVEAV 374
+V KD + E + + E+ D + + +EAV
Sbjct: 1265 NVP--KDQAKGEAIEIKGSKENLDKARDLILEAV 1296
Score = 66 (28.3 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 318 KIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLLL 377
+I +IG+ G + +R +GAQIDV D D I+ K EA +L
Sbjct: 893 QIPSLIGQRGREMDKLRADTGAQIDVPGANDAPDTSGRVEIKIKGT---KKQVEEAKKIL 949
Query: 378 QTKINDEDDDTVT 390
Q + + E D TVT
Sbjct: 950 QQR-SSEFDATVT 961
Score = 64 (27.6 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMA 623
V+G+ GS + +IRK +G I + ++ +G+ + I G+ E A +LI + A
Sbjct: 1245 VVGQGGSQINSIRKQTGCRINVPKDQA-KGEAIE-IKGSKENLDKARDLILEAVRA 1298
>UNIPROTKB|E1B8C6 [details] [associations]
symbol:E1B8C6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:DAAA02008155
IPI:IPI00701183 Ensembl:ENSBTAT00000038517 OMA:YLINARE
Uniprot:E1B8C6
Length = 116
Score = 109 (43.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
+ + P+ +IG +IG+ G IN IRQ +RA++K+ +P G+ R VTI
Sbjct: 42 HELTIPNNLIGCIIGRQGANINEIRQMSRAQIKIANPVEGSSGRQVTI 89
>UNIPROTKB|E9PAL6 [details] [associations]
symbol:MEX3D "RNA-binding protein MEX3D" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50089
SMART:SM00184 SMART:SM00322 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC005943
KO:K15686 IPI:IPI00783891 RefSeq:NP_001167589.1 UniGene:Hs.436495
GeneID:399664 KEGG:hsa:399664 CTD:399664 HGNC:HGNC:16734
GenomeRNAi:399664 NextBio:105463 EMBL:AC027307
ProteinModelPortal:E9PAL6 SMR:E9PAL6 Ensembl:ENST00000388824
UCSC:uc021uml.1 OMA:KAPNPGR ArrayExpress:E9PAL6 Bgee:E9PAL6
Uniprot:E9PAL6
Length = 666
Score = 95 (38.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
KK EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 174 KKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 222
Score = 86 (35.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 294 SLVSGLVGASQSE-----ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
S GL GA+Q + I+V P+ +G V+G G TIK I+Q + I V +D
Sbjct: 255 SKAGGLPGAAQGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYI-VTPGRD 313
Query: 349 NRDECVITVTAIESPDDIKSMAVEAVLLLQT 379
E V VT + D +EA + L+T
Sbjct: 314 K--EPVFAVTGMPENVDRAREEIEAHITLRT 342
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 94 (38.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAIESPDDI 366
+ +RV+ P + G +IGKGG IK IR+A+GA I V + + E +T++ ++
Sbjct: 153 ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINL 212
Query: 367 KSMAVEAVLL 376
V +LL
Sbjct: 213 CMTQVCQILL 222
Score = 92 (37.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPT-HSCAMEFDNFVLISGES 201
+++VP++Q ++IGK G+ IK +R T SI+V ASE HS + V +SG +
Sbjct: 156 RVIVPATQCGSLIGKGGSKIKDIREATGASIQV----ASEMLPHST----ERAVTLSGTA 207
Query: 202 EAVKKALFAISAIMYKFSPR 221
+A+ + + I+ + P+
Sbjct: 208 DAINLCMTQVCQILLEAPPK 227
Score = 82 (33.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 40 RILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
R+L +GS+IGK G I IR+E+ A++ + D +R+VTI
Sbjct: 75 RLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDG--SCPERIVTI 119
>UNIPROTKB|E2RBJ9 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 GO:GO:0005739 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 GeneTree:ENSGT00530000063224
CTD:11022 EMBL:AAEX03011058 EMBL:AAEX03011059 RefSeq:XP_851426.2
Ensembl:ENSCAFT00000020405 GeneID:609125 KEGG:cfa:609125
Uniprot:E2RBJ9
Length = 563
Score = 97 (39.2 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPD 364
SE+L + P +GR+IG+GG TI+SI +ASGA+I D K++ +++ I+
Sbjct: 126 SEQLSV----PQRSVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLS-RLIKISG 178
Query: 365 DIKSMAVEAVLLLQTKINDED 385
K +A L+L+ DE+
Sbjct: 179 TQKEVAAAKHLILEKVSEDEE 199
Score = 94 (38.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 306 EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD 365
+++ I + P + +IG+ G IK +R+ +GA+IDVD T+D DE V+ ++
Sbjct: 51 DDIEIEMRVPQEAVKLIIGRQGTNIKQLRKQTGARIDVD-TEDVGDERVLLISGFPVQVC 109
Query: 366 IKSMAVEAVLLLQTKINDE 384
A+ +L T ++++
Sbjct: 110 KAKAAIHQILTENTPVSEQ 128
Score = 84 (34.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG----DRVALISGTPEQKRAAENLI 617
+VG++IG+ G + +I K SGA I K S G R+ ISGT ++ AA++LI
Sbjct: 135 SVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLSRLIKISGTQKEVAAAKHLI 190
Score = 76 (31.8 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++ VP IIG+ G IK+LR +T I V +D + + +LISG
Sbjct: 54 EIEMRVPQEAVKLIIGRQGTNIKQLRKQTGARIDVDTEDVGD---------ERVLLISGF 104
Query: 201 SEAVKKALFAISAIMYKFSP 220
V KA AI I+ + +P
Sbjct: 105 PVQVCKAKAAIHQILTENTP 124
>UNIPROTKB|F1NNX1 [details] [associations]
symbol:HDLBP "Vigilin" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00690000102206
IPI:IPI00583171 EMBL:AADN02024240 EMBL:AADN02024241
EMBL:AADN02024242 EMBL:AADN02024243 Ensembl:ENSGALT00000041042
ArrayExpress:F1NNX1 Uniprot:F1NNX1
Length = 1264
Score = 90 (36.7 bits), Expect = 2.9e-05, Sum P(5) = 2.9e-05
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 322 VIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLLLQTKI 381
+IGKGGG I+ +R +GA+I + T +++D+ +IT+ E + +K E L++
Sbjct: 738 LIGKGGGNIRKVRDNTGARI-IFPTSEDKDQELITIMGTE--EAVKEAQKELEALIKNLD 794
Query: 382 NDEDDDTV 389
N +D V
Sbjct: 795 NVVEDSMV 802
Score = 82 (33.9 bits), Expect = 2.9e-05, Sum P(5) = 2.9e-05
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
++K+K+ + V SQ +IG G +++ + KT S+++ P D+S T
Sbjct: 288 EEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILEKTGVSVEIPPTDSSSET-------- 339
Query: 193 NFVLISGESEAVKKALFAISAIMYKFS 219
V++ GE E + +AL + A F+
Sbjct: 340 --VILRGEPEKLGQALTEVYAKANSFT 364
Score = 70 (29.7 bits), Expect = 9.5e-05, Sum P(4) = 9.5e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
+V+ LV S S + + + F+K +IGKGG IK IR+ S +ID+
Sbjct: 572 MVADLVENSFS--ISVPIFKQFHK--NIIGKGGANIKKIREESNTKIDL 616
Score = 70 (29.7 bits), Expect = 0.00038, Sum P(5) = 0.00038
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASE 182
NIIGK GA IK++R ++ T I + + A++
Sbjct: 594 NIIGKGGANIKKIREESNTKIDLPQRTATQ 623
Score = 69 (29.3 bits), Expect = 9.5e-05, Sum P(4) = 9.5e-05
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
+IGK G N+ +R +GA I S+ + + I GT E + A+ ++A I
Sbjct: 738 LIGKGGGNIRKVRDNTGARIIFPTSED-KDQELITIMGTEEAVKEAQKELEALI 790
Score = 53 (23.7 bits), Expect = 2.9e-05, Sum P(5) = 2.9e-05
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 567 KVIGKAGSNLANIRKISGATIEM--SDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
K+IG+ G+ + IR I+ D +S D++ I+G + AA + I +
Sbjct: 1062 KIIGRKGAVITQIRTEHEVNIQFPDKDDESQAQDQIT-ITGYEKNAEAARDAIMKIV 1117
Score = 50 (22.7 bits), Expect = 6.6e-05, Sum P(4) = 6.6e-05
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 590 SDSKSSRGDRVALISGTPEQKRAAENLIQAFIMAT 624
+D S R + +ISG E+ AA+ +QA + T
Sbjct: 936 ADPSSPRKCDIIIISGRREKCEAAKEALQALVPVT 970
Score = 44 (20.5 bits), Expect = 2.9e-05, Sum P(5) = 2.9e-05
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP 75
VIGK+G+ + + +T ++++ P
Sbjct: 164 VIGKNGEKLQDLELKTATKIQIPRP 188
Score = 44 (20.5 bits), Expect = 2.9e-05, Sum P(5) = 2.9e-05
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 27 EKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVT 85
E+D++ E + ++ P + G K+++ + Q+T R+ + P + V T
Sbjct: 217 EQDKRAVERLDVEKVYHP-----FIAGPYNKLVSELMQDTGTRINIPPPSVNKTEIVFT 270
Score = 41 (19.5 bits), Expect = 0.00070, Sum P(5) = 0.00070
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
+IGK+G IN I+ + V++ P K ++ I
Sbjct: 449 LIGKNGANINRIKDLYKVSVRI--PPDNEKSNLIRI 482
Score = 41 (19.5 bits), Expect = 0.00070, Sum P(5) = 0.00070
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 50 SVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
++IG+ G+ I IR++ V + P P K +V +
Sbjct: 520 TIIGQKGERIREIREKF-PEVIINFPDPAHKSDIVQL 555
Score = 38 (18.4 bits), Expect = 2.9e-05, Sum P(5) = 2.9e-05
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 419 KADVRISKGDKPKCADANDEL 439
K D+ I G + KC A + L
Sbjct: 943 KCDIIIISGRREKCEAAKEAL 963
>UNIPROTKB|F1SI06 [details] [associations]
symbol:HDLBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0003723 GeneTree:ENSGT00690000102206 OMA:YEKNTEA
EMBL:FP102549 Ensembl:ENSSSCT00000017834 Uniprot:F1SI06
Length = 1095
Score = 86 (35.3 bits), Expect = 3.2e-05, Sum P(4) = 3.2e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+V+ LV S S + + + F+K +IGKGG IK IR+ S +ID+ N + V
Sbjct: 572 MVADLVENSYS--ISVPIFKQFHK--NIIGKGGANIKKIREESNTKIDLPAENSNSETIV 627
Query: 355 IT 356
IT
Sbjct: 628 IT 629
Score = 77 (32.2 bits), Expect = 3.2e-05, Sum P(4) = 3.2e-05
Identities = 21/87 (24%), Positives = 43/87 (49%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
++K+K+ + V SQ +IG G +++ + +T S+++ P D++ T
Sbjct: 288 EEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSASET-------- 339
Query: 193 NFVLISGESEAVKKALFAISAIMYKFS 219
V++ GE E + +AL + A F+
Sbjct: 340 --VILRGEPEKLGQALTEVYAKANSFT 364
Score = 60 (26.2 bits), Expect = 3.2e-05, Sum P(4) = 3.2e-05
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
+IGK G + +R +GA I ++ D + +I G + R A+ ++A I
Sbjct: 741 LIGKGGGKIRKVRDSTGARIIFPAAEDKDQDLITII-GREDAVREAQRELEALI 793
Score = 44 (20.5 bits), Expect = 3.2e-05, Sum P(4) = 3.2e-05
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP 75
VIGK+G+ + + +T ++++ P
Sbjct: 165 VIGKNGEKLQDLELKTATKIQIPRP 189
Score = 39 (18.8 bits), Expect = 9.6e-05, Sum P(4) = 9.6e-05
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 57 KVINSIRQETRARVKVVDPFPGAKDRVVT 85
++++ I QET R+ + P + V T
Sbjct: 242 RLVSEIMQETGTRINIPPPSVNRTEIVFT 270
>UNIPROTKB|J9P0T0 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 InterPro:IPR002999 Pfam:PF01281 GO:GO:0003723
Pfam:PF00567 SMART:SM00333 PROSITE:PS50304 Gene3D:3.40.5.10
InterPro:IPR009027 InterPro:IPR020070 SUPFAM:SSF55658
GeneTree:ENSGT00530000063224 EMBL:AAEX03011058 EMBL:AAEX03011059
Ensembl:ENSCAFT00000048274 Uniprot:J9P0T0
Length = 605
Score = 97 (39.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPD 364
SE+L + P +GR+IG+GG TI+SI +ASGA+I D K++ +++ I+
Sbjct: 126 SEQLSV----PQRSVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLS-RLIKISG 178
Query: 365 DIKSMAVEAVLLLQTKINDED 385
K +A L+L+ DE+
Sbjct: 179 TQKEVAAAKHLILEKVSEDEE 199
Score = 94 (38.1 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 306 EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD 365
+++ I + P + +IG+ G IK +R+ +GA+IDVD T+D DE V+ ++
Sbjct: 51 DDIEIEMRVPQEAVKLIIGRQGTNIKQLRKQTGARIDVD-TEDVGDERVLLISGFPVQVC 109
Query: 366 IKSMAVEAVLLLQTKINDE 384
A+ +L T ++++
Sbjct: 110 KAKAAIHQILTENTPVSEQ 128
Score = 84 (34.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG----DRVALISGTPEQKRAAENLI 617
+VG++IG+ G + +I K SGA I K S G R+ ISGT ++ AA++LI
Sbjct: 135 SVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLSRLIKISGTQKEVAAAKHLI 190
Score = 76 (31.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++ VP IIG+ G IK+LR +T I V +D + + +LISG
Sbjct: 54 EIEMRVPQEAVKLIIGRQGTNIKQLRKQTGARIDVDTEDVGD---------ERVLLISGF 104
Query: 201 SEAVKKALFAISAIMYKFSP 220
V KA AI I+ + +P
Sbjct: 105 PVQVCKAKAAIHQILTENTP 124
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 84 (34.6 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 28 KDEKGNEESVI-YRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
K E+ +S++ R + G +IGK+GK + +R ET + V PG DRV+T+
Sbjct: 217 KTEEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTV 276
Score = 77 (32.2 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSR-GDRVALISGTPEQKRAAENLI 617
A+ VG +IG+ G+ + IR+ SGA I ++ + G+R+ I G+ + A L+
Sbjct: 470 ADMVGCIIGRGGTKITEIRRSSGARISIAKAPHDETGERMFTIMGSAQANEKALYLL 526
Score = 74 (31.1 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 306 EELVIR-VLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTK-DNRDECVITV 357
EE+ + + P + +G +IG+GG I IR++SGA+I + D E + T+
Sbjct: 459 EEIQTQNISIPADMVGCIIGRGGTKITEIRRSSGARISIAKAPHDETGERMFTI 512
Score = 56 (24.8 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 15/69 (21%), Positives = 34/69 (49%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ +Q IIG+ G IK ++ + +++ + P + + V + G E
Sbjct: 316 RLLISHNQMGTIIGRQGLKIKHIQDAS--GVRMVAQKEMLPQST-----ERIVEVQGTPE 368
Query: 203 AVKKALFAI 211
++KA++ I
Sbjct: 369 GIEKAIWEI 377
>POMBASE|SPCC757.09c [details] [associations]
symbol:rnc1 "RNA-binding protein that suppresses
calcineurin deletion Rnc1" species:4896 "Schizosaccharomyces pombe"
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IGI]
[GO:0048255 "mRNA stabilization" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
PomBase:SPCC757.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003729 GO:GO:0048255 GO:GO:0043409
HSSP:Q91WJ8 OrthoDB:EOG4Z65XM eggNOG:NOG315872 PIR:T41600
RefSeq:NP_587684.1 ProteinModelPortal:O74919 STRING:O74919
PRIDE:O74919 EnsemblFungi:SPCC757.09c.1 GeneID:2539434
KEGG:spo:SPCC757.09c HOGENOM:HOG000184255 OMA:NCESIAY
NextBio:20800596 Uniprot:O74919
Length = 398
Score = 90 (36.7 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPEQKRAA 613
A+ VG +IG+ GS ++ IR+ SG+ I ++ + G+R+ I+GT E+ A
Sbjct: 329 ADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITGTHEENEKA 381
Score = 87 (35.7 bits), Expect = 8.1e-05, Sum P(3) = 8.1e-05
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 304 QSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVITVTAIES 362
Q ++ + P + +G +IG+GG I IR+ SG++I + + D E + T+T
Sbjct: 317 QQPKVTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITGTHE 376
Query: 363 PDDIKSMAVEAVLLLQTKINDEDD 386
++ +A+ LL ++ E D
Sbjct: 377 ENE------KALFLLYQQLEMEKD 394
Score = 76 (31.8 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 35 ESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
+ + R L G +IGK+GK + +R T + V P DRV+TI
Sbjct: 92 QQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVPNVHDRVLTI 143
Score = 66 (28.3 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 27/79 (34%), Positives = 34/79 (43%)
Query: 145 LVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAV 204
L+ + ++ IIGKAG + LRS T VT A H D + ISG E V
Sbjct: 99 LLSTREAGIIIGKAGKNVAELRSTTNVKAGVTK--AVPNVH------DRVLTISGPLENV 150
Query: 205 KKALFAISAIMYKFSPRED 223
+A I I K S D
Sbjct: 151 VRAYRFIIDIFAKNSTNPD 169
Score = 45 (20.9 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 130 TDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
T +D K ++L+ S +IIG+ G IK ++ K + + KD
Sbjct: 171 TPSDANTPRK--LRLLIAHSLMGSIIGRNGLRIKLIQDKCSCRM-IASKD 217
Score = 42 (19.8 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIR 334
+R+L + +G +IG+ G IK I+
Sbjct: 181 LRLLIAHSLMGSIIGRNGLRIKLIQ 205
>UNIPROTKB|D4ADH2 [details] [associations]
symbol:D4ADH2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00197192
PRIDE:D4ADH2 Ensembl:ENSRNOT00000026359 OMA:IFHICAV Uniprot:D4ADH2
Length = 311
Score = 81 (33.6 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 297 SGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV-DDTKDNRDECVI 355
S + ++ + + V+ P ++ G +IGKG IK IR+++GAQ+ + N E I
Sbjct: 84 SSMTNSTAASRPPVTVV-PASQCGSLIGKG--KIKEIRESTGAQVQAAGNMLPNSTERAI 140
Query: 356 TVTAIESPDDIKSMAVEAVLLLQT 379
T+ I P I+ + V++L+T
Sbjct: 141 TIAGI-LPSIIECVKQICVVMLET 163
Score = 71 (30.1 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G +IG+ + + IR++SGA I+ ++ DR I+G A+ LI A
Sbjct: 245 IGCIIGRQDAKINEIRQMSGAQIKTANPVEGSTDRQVTITGPAASISLAQYLINA 299
Score = 55 (24.4 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+I KS + + + QE AR+ + + +R++T+
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIRKSRESVKKL-QEKGARINISEG--NCPERIITL 60
Score = 44 (20.5 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 21/87 (24%), Positives = 43/87 (49%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+ + +II K+ ++K+L+ K ++ + + P + + ++G +
Sbjct: 17 RLLMHGKEVGSIIRKSRESVKKLQEK---GARINISEGNCP--------ERIITLAGPTN 65
Query: 203 AVKKALFAISAIMYKFSPREDIPLETT 229
A+ KA FA+ I+ K P EDI T
Sbjct: 66 AIFKA-FAM--IIDK--PEEDISSSMT 87
>MGI|MGI:1919884 [details] [associations]
symbol:Tdrkh "tudor and KH domain containing protein"
species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 InterPro:IPR002999 MGI:MGI:1919884 GO:GO:0005739
GO:GO:0003723 Pfam:PF00567 SMART:SM00333 PROSITE:PS50304
GeneTree:ENSGT00530000063224 CTD:11022 eggNOG:NOG262512
HOGENOM:HOG000037932 HOVERGEN:HBG055309 OMA:FHADEYL
OrthoDB:EOG4T4CV4 EMBL:BC049363 IPI:IPI00330464 RefSeq:NP_082583.1
UniGene:Mm.331198 UniGene:Mm.470795 PDB:1WE8 PDBsum:1WE8
ProteinModelPortal:Q80VL1 SMR:Q80VL1 STRING:Q80VL1
PhosphoSite:Q80VL1 PaxDb:Q80VL1 PRIDE:Q80VL1
Ensembl:ENSMUST00000045245 Ensembl:ENSMUST00000166032 GeneID:72634
KEGG:mmu:72634 UCSC:uc008qge.1 InParanoid:Q80VL1
EvolutionaryTrace:Q80VL1 NextBio:336631 Bgee:Q80VL1
CleanEx:MM_TDRKH Genevestigator:Q80VL1
GermOnline:ENSMUSG00000041912 Uniprot:Q80VL1
Length = 560
Score = 96 (38.9 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAV 374
P +GR+IG+GG TI+SI +ASGA+I D K++ +++ I+ K +A
Sbjct: 132 PQRSVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLS-RLIKISGTQKEVAAAKH 188
Query: 375 LLLQTKINDED 385
L+L+ DE+
Sbjct: 189 LILEKVSEDEE 199
Score = 92 (37.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 306 EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD 365
+++ I + P + +IG+ G IK +R+ +GA+IDVD T+D DE V+ ++
Sbjct: 51 DDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVD-TEDVGDERVLLISGFPVQVC 109
Query: 366 IKSMAVEAVLLLQTKINDE 384
A+ +L T + ++
Sbjct: 110 KAKAAIHQILTENTPVFEQ 128
Score = 84 (34.6 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG----DRVALISGTPEQKRAAENLI 617
+VG++IG+ G + +I K SGA I K S G R+ ISGT ++ AA++LI
Sbjct: 135 SVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLSRLIKISGTQKEVAAAKHLI 190
Score = 80 (33.2 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++ VP IIG+ GA IK+LR +T I V +D + + +LISG
Sbjct: 54 EIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGD---------ERVLLISGF 104
Query: 201 SEAVKKALFAISAIMYKFSP 220
V KA AI I+ + +P
Sbjct: 105 PVQVCKAKAAIHQILTENTP 124
>UNIPROTKB|G3V8T7 [details] [associations]
symbol:Tdrkh "RCG51933, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 RGD:1311196 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 EMBL:CH474015
GeneTree:ENSGT00530000063224 CTD:11022 EMBL:AC133978
RefSeq:NP_001014060.2 UniGene:Rn.98848 PRIDE:G3V8T7
Ensembl:ENSRNOT00000028299 GeneID:310652 KEGG:rno:310652
NextBio:662332 Uniprot:G3V8T7
Length = 560
Score = 96 (38.9 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 315 PFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAV 374
P +GR+IG+GG TI+SI +ASGA+I D K++ +++ I+ K +A
Sbjct: 132 PQRSVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLS-RLIKISGTQKEVAAAKH 188
Query: 375 LLLQTKINDED 385
L+L+ DE+
Sbjct: 189 LILEKVSEDEE 199
Score = 92 (37.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 306 EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD 365
+++ I + P + +IG+ G IK +R+ +GA+IDVD T+D DE V+ ++
Sbjct: 51 DDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVD-TEDVGDERVLLISGFPVQVC 109
Query: 366 IKSMAVEAVLLLQTKINDE 384
A+ +L T + ++
Sbjct: 110 KAKAAIHQILTENTPVFEQ 128
Score = 84 (34.6 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 564 AVGKVIGKAGSNLANIRKISGATIEMSDSKSSRG----DRVALISGTPEQKRAAENLI 617
+VG++IG+ G + +I K SGA I K S G R+ ISGT ++ AA++LI
Sbjct: 135 SVGRIIGRGGETIRSICKASGAKITCD--KESEGTLLLSRLIKISGTQKEVAAAKHLI 190
Score = 80 (33.2 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++ VP IIG+ GA IK+LR +T I V +D + + +LISG
Sbjct: 54 EIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGD---------ERVLLISGF 104
Query: 201 SEAVKKALFAISAIMYKFSP 220
V KA AI I+ + +P
Sbjct: 105 PVQVCKAKAAIHQILTENTP 124
>UNIPROTKB|G4N6Y1 [details] [associations]
symbol:MGG_06496 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CM001234
RefSeq:XP_003717064.1 ProteinModelPortal:G4N6Y1
EnsemblFungi:MGG_06496T0 GeneID:2684651 KEGG:mgr:MGG_06496
Uniprot:G4N6Y1
Length = 1256
Score = 79 (32.9 bits), Expect = 4.8e-05, Sum P(3) = 4.8e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 139 KEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLIS 198
K+ + VP S +IIGK GA IK L+ +T I++ PKD + E V+I
Sbjct: 188 KQTVTVSVPQSVRPHIIGKQGAAIKALQERTGARIQL-PKDNNAQPIDDDDEAMVDVVIE 246
Query: 199 GESEAVKKALFAI 211
G + + + A AI
Sbjct: 247 GNAVSARAAQDAI 259
Score = 77 (32.2 bits), Expect = 4.8e-05, Sum P(3) = 4.8e-05
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 293 LSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDE 352
LSLV L S + + ++ ++ IG GG + ++RQ +GA+ID+ + +D D
Sbjct: 829 LSLVQYLKDNSFTATITVQQ----KQLPHFIGSGGSNMDALRQQTGAKIDIPNGRDTPDS 884
Query: 353 CVITVTAIESPDDIKSMAVEAVLLLQTKINDEDDDTV 389
V + I+ KS A +L+ K DDTV
Sbjct: 885 TVEIL--IKGT---KSQVAAAKKILEEK-KSVFDDTV 915
Score = 72 (30.4 bits), Expect = 4.8e-05, Sum P(3) = 4.8e-05
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
VIG+ GS + IRK SG TI + K D + ++ GT E A++LI A +
Sbjct: 1195 VIGQGGSKVNQIRKQSGCTITVP--KQGSDDPIEVV-GTKEGIEKAKDLILAAV 1245
Score = 62 (26.9 bits), Expect = 0.00038, Sum P(4) = 0.00038
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 7 RYRSQRDNDRDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQET 66
R R + D NQ R + + G +++V + P V +IGK G I ++++ T
Sbjct: 162 RLRFEATGPSDVANQALR-DLVQQIGAKQTVTVSV--PQSVRPHIIGKQGAAIKALQERT 218
Query: 67 RARVKV 72
AR+++
Sbjct: 219 GARIQL 224
Score = 48 (22.0 bits), Expect = 0.00038, Sum P(4) = 0.00038
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 130 TDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175
T+++K+R + P + ++IGK G+ I+ L+ + I+V
Sbjct: 669 TEDEKERGFTLDFDF--PQKFANHLIGKGGSNIRELKERFDVDIQV 712
>UNIPROTKB|D4A2R5 [details] [associations]
symbol:Mex3c "Protein Mex3c" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IEA] InterPro:IPR001841
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50089 SMART:SM00184 SMART:SM00322 RGD:1309023
GO:GO:0043231 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:CH473971 KO:K15686
CTD:51320 GeneTree:ENSGT00390000018714 IPI:IPI00560031
RefSeq:NP_001100847.1 UniGene:Rn.8138 Ensembl:ENSRNOT00000041227
GeneID:307271 KEGG:rno:307271 NextBio:657191 Uniprot:D4A2R5
Length = 464
Score = 92 (37.4 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
+K EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 32 RKSVNTTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 80
Score = 81 (33.6 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 29/99 (29%), Positives = 48/99 (48%)
Query: 292 GLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRD 351
GLS L G + ++V P+ +G V+G G TIK I+Q + I V ++D
Sbjct: 121 GLSCSPNLPG-----QTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYI-VTPSRDK-- 172
Query: 352 ECVITVTAIESPDDIKSMAVEAVLLLQT----KINDEDD 386
E V VT + D +E + ++T ++N+E+D
Sbjct: 173 EPVFEVTGMPENVDRAREEIEMHIAMRTGNYIELNEEND 211
>MGI|MGI:2681847 [details] [associations]
symbol:Mex3d "mex3 homolog D (C. elegans)" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006402
"mRNA catabolic process" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=NAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0050779 "RNA destabilization" evidence=ISO] [GO:0061157 "mRNA
destabilization" evidence=NAS] InterPro:IPR001841
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50089 SMART:SM00184 SMART:SM00322 MGI:MGI:2681847
Prosite:PS00518 GO:GO:0005634 GO:GO:0048471 GO:GO:0042981
GO:GO:0046872 GO:GO:0008270 GO:GO:0017091 Gene3D:3.30.40.10
InterPro:IPR013083 HSSP:Q00341 GO:GO:0061157 HOVERGEN:HBG071698
KO:K15686 eggNOG:NOG260228 HOGENOM:HOG000236282 CTD:399664
EMBL:CAAA01108096 EMBL:AC152062 EMBL:AK149801 IPI:IPI00831125
IPI:IPI00957037 RefSeq:NP_941017.2 UniGene:Mm.268389
ProteinModelPortal:Q3UE17 SMR:Q3UE17 PhosphoSite:Q3UE17
PaxDb:Q3UE17 PRIDE:Q3UE17 GeneID:237400 KEGG:mmu:237400
InParanoid:Q3UE17 NextBio:383340 CleanEx:MM_MEX3D
Genevestigator:Q3UE17 Uniprot:Q3UE17
Length = 643
Score = 95 (38.5 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
KK EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 155 KKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 203
Score = 81 (33.6 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 31/101 (30%), Positives = 45/101 (44%)
Query: 294 SLVSGLVGASQSE-----ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
S GL GA+ + I+V P+ +G V+G G TIK I+Q + I V +D
Sbjct: 235 SKAGGLSGATPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYI-VTPGRD 293
Query: 349 NRDECVITVTAIESPDDIKSMAVEAVLLLQT-KINDEDDDT 388
E V VT + D +EA + L+T D D+
Sbjct: 294 K--EPVFAVTGMPENVDRAREEIEAHITLRTGAFTDSGPDS 332
>UNIPROTKB|F1M336 [details] [associations]
symbol:Mex3d "Protein Mex3d" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50089 SMART:SM00184 SMART:SM00322 RGD:1310576
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000018714 IPI:IPI00948007
Ensembl:ENSRNOT00000065974 ArrayExpress:F1M336 Uniprot:F1M336
Length = 618
Score = 95 (38.5 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
KK EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 128 KKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 176
Score = 80 (33.2 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 294 SLVSGLVGASQSE-----ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
S GL GA+ + I+V P+ +G V+G G TIK I+Q + I V +D
Sbjct: 209 SKAGGLSGATPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYI-VTPGRD 267
Query: 349 NRDECVITVTAIESPDDIKSMAVEAVLLLQT 379
E V VT + D +EA + L+T
Sbjct: 268 K--EPVFAVTGMPENVDRAREEIEAHITLRT 296
>RGD|1309023 [details] [associations]
symbol:Mex3c "mex-3 homolog C (C. elegans)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA;ISO]
InterPro:IPR001841 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50089 SMART:SM00184
SMART:SM00322 RGD:1309023 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
Gene3D:3.30.40.10 InterPro:IPR013083 IPI:IPI00766855
Ensembl:ENSRNOT00000021130 Uniprot:F1M8U4
Length = 511
Score = 92 (37.4 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
+K EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 79 RKSVNTTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 127
Score = 81 (33.6 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 29/99 (29%), Positives = 48/99 (48%)
Query: 292 GLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRD 351
GLS L G + ++V P+ +G V+G G TIK I+Q + I V ++D
Sbjct: 168 GLSCSPNLPG-----QTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYI-VTPSRDK-- 219
Query: 352 ECVITVTAIESPDDIKSMAVEAVLLLQT----KINDEDD 386
E V VT + D +E + ++T ++N+E+D
Sbjct: 220 EPVFEVTGMPENVDRAREEIEMHIAMRTGNYIELNEEND 258
>UNIPROTKB|F1N0W7 [details] [associations]
symbol:MEX3C "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50089 SMART:SM00184 SMART:SM00322 GO:GO:0043231
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 OMA:SQTIWTP GeneTree:ENSGT00390000018714
EMBL:DAAA02057036 IPI:IPI00838311 UniGene:Bt.54148
Ensembl:ENSBTAT00000019818 NextBio:20875011 Uniprot:F1N0W7
Length = 516
Score = 92 (37.4 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
+K EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 84 RKSVNTTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 132
Score = 81 (33.6 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 29/99 (29%), Positives = 48/99 (48%)
Query: 292 GLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRD 351
GLS L G + ++V P+ +G V+G G TIK I+Q + I V ++D
Sbjct: 173 GLSCSPNLPG-----QTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYI-VTPSRDK-- 224
Query: 352 ECVITVTAIESPDDIKSMAVEAVLLLQT----KINDEDD 386
E V VT + D +E + ++T ++N+E+D
Sbjct: 225 EPVFEVTGMPENVDRAREEIEMHIAMRTGNYIELNEEND 263
>ZFIN|ZDB-GENE-030131-6822 [details] [associations]
symbol:wu:fa07b03 "wu:fa07b03" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-6822 GO:GO:0003723
GeneTree:ENSGT00690000102206 EMBL:AL929346 IPI:IPI00485868
Ensembl:ENSDART00000128279 ArrayExpress:E7FCA5 Bgee:E7FCA5
Uniprot:E7FCA5
Length = 1259
Score = 81 (33.6 bits), Expect = 7.7e-05, Sum P(4) = 7.7e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
L++ LV +S S + I F+K +IGKGG IK IR+ + +ID+ N + V
Sbjct: 570 LIAELVESSFSISVPIHK--QFHK--NIIGKGGANIKKIREETNTKIDLPTENSNSEVIV 625
Query: 355 IT 356
IT
Sbjct: 626 IT 627
Score = 70 (29.7 bits), Expect = 7.7e-05, Sum P(4) = 7.7e-05
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 130 TDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPT 184
T +KKRK + V SQ I+G G T++ + T S+++ P D++ T
Sbjct: 284 TYEEKKRKTTT-ISVEVKKSQHKYIVGPKGNTLQEILENTGVSVEMPPLDSASET 337
Score = 66 (28.3 bits), Expect = 7.7e-05, Sum P(4) = 7.7e-05
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 567 KVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMA 623
K+IG+ G+ ++ IRK ++ D + D V +ISG A++ I+ + A
Sbjct: 1050 KIIGRKGAVISQIRKEYDVNVQFPDKGDEQQD-VIVISGYERNANDAKSAIEQLVAA 1105
Score = 59 (25.8 bits), Expect = 0.00085, Sum P(4) = 0.00085
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKA 207
++IGK GA I R++ + + S+++ P+D+ C + V I G+ + V+ A
Sbjct: 446 HLIGKNGANINRIKEQYKVSVRI-PQDSER----CGL-----VRIEGDPQGVQLA 490
Score = 49 (22.3 bits), Expect = 7.7e-05, Sum P(4) = 7.7e-05
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP-FPGAKDRVV 84
+ G +++ + QET AR+ + P P KD +V
Sbjct: 234 IAGAYNRLVQELSQETGARISIPPPSIP--KDEIV 266
Score = 40 (19.1 bits), Expect = 0.00055, Sum P(4) = 0.00055
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 51 VIGKSGKVINSIRQETRARVKVV-DPFPGAKDRV 83
VIGK+G+ + + +T ++ + P A R+
Sbjct: 162 VIGKNGEKLQELELKTATKIAIPRSDDPNANIRI 195
>RGD|1310576 [details] [associations]
symbol:Mex3d "mex-3 homolog D (C. elegans)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001841 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50089 SMART:SM00184
SMART:SM00322 RGD:1310576 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00390000018714
IPI:IPI00369458 Ensembl:ENSRNOT00000040170 ArrayExpress:F1M5V7
Uniprot:F1M5V7
Length = 692
Score = 95 (38.5 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
KK EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 202 KKSVNMTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 250
Score = 80 (33.2 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 294 SLVSGLVGASQSE-----ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD 348
S GL GA+ + I+V P+ +G V+G G TIK I+Q + I V +D
Sbjct: 283 SKAGGLSGATPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYI-VTPGRD 341
Query: 349 NRDECVITVTAIESPDDIKSMAVEAVLLLQT 379
E V VT + D +EA + L+T
Sbjct: 342 K--EPVFAVTGMPENVDRAREEIEAHITLRT 370
>TAIR|locus:2043530 [details] [associations]
symbol:AT2G25970 "AT2G25970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 EMBL:AC004747 EMBL:AC005395
eggNOG:NOG300923 KO:K13210 HSSP:Q9UNW9 EMBL:AY078954 EMBL:AK226845
IPI:IPI00540360 PIR:T02627 RefSeq:NP_180167.1 UniGene:At.21555
ProteinModelPortal:O82762 SMR:O82762 STRING:O82762 PaxDb:O82762
PRIDE:O82762 ProMEX:O82762 EnsemblPlants:AT2G25970.1 GeneID:817137
KEGG:ath:AT2G25970 TAIR:At2g25970 HOGENOM:HOG000242545
InParanoid:O82762 OMA:AANSTQD PhylomeDB:O82762
ProtClustDB:CLSN2913011 ArrayExpress:O82762 Genevestigator:O82762
Uniprot:O82762
Length = 632
Score = 112 (44.5 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 254 NADPILPSRSV-----PSILGAAR--VPDLQGYADTGNTWPVYSTGLSLVSGLVGASQSE 306
+ADP +R+V P + A + D+ A+ GNT G + G GA Q
Sbjct: 174 DADPNCATRTVDLTGTPDQISKAEQLITDVLQEAEAGNTAGSGGGGGRRMGGQAGADQ-- 231
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV 343
V+++ P NK+G +IGKGG TIKS++ +GA+I V
Sbjct: 232 -FVMKI--PNNKVGLIIGKGGETIKSMQAKTGARIQV 265
Score = 61 (26.5 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 32 GNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV---VDPFPGAKDRVVTI 86
G+ + +I P+ +G +IGK G+ I ++ ++ A+++V +D P R V +
Sbjct: 129 GSFQGTTKKIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDL 186
>UNIPROTKB|E2RNS5 [details] [associations]
symbol:HDLBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00690000102206
EMBL:AAEX03014560 Ensembl:ENSCAFT00000038084 Uniprot:E2RNS5
Length = 1177
Score = 90 (36.7 bits), Expect = 0.00033, Sum P(5) = 0.00033
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
IR ++K +IGKGGG I+ +R +GA+I + T +++D+ +IT+ E D ++
Sbjct: 641 IRAKPEYHKF--LIGKGGGKIRKVRDNTGARI-IFPTAEDKDQDLITIIGKE--DAVREA 695
Query: 370 AVEAVLLLQTKINDEDD 386
E L+Q N +D
Sbjct: 696 QKELEALIQNLDNVVED 712
Score = 85 (35.0 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+V+ LV S S + + + F+K +IGKGG IK IR+ S +ID+ N + +
Sbjct: 482 MVADLVENSYS--ISVPIFKQFHK--NIIGKGGANIKKIREESNTKIDLPAENSNSETII 537
Query: 355 IT 356
IT
Sbjct: 538 IT 539
Score = 74 (31.1 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
++K+K+ + V SQ +IG G +++ + +T S+++ P D+ T
Sbjct: 198 EEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISET-------- 249
Query: 193 NFVLISGESEAVKKALFAISAIMYKFS 219
V++ GE E + +AL + A F+
Sbjct: 250 --VILRGEPEKLGQALTEVYAKANSFT 274
Score = 70 (29.7 bits), Expect = 0.00033, Sum P(5) = 0.00033
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEPT 184
NIIGK GA IK++R ++ T I + ++++ T
Sbjct: 504 NIIGKGGANIKKIREESNTKIDLPAENSNSET 535
Score = 60 (26.2 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
+IGK G + +R +GA I ++ D + +I G + R A+ ++A I
Sbjct: 651 LIGKGGGKIRKVRDNTGARIIFPTAEDKDQDLITII-GKEDAVREAQKELEALI 703
Score = 49 (22.3 bits), Expect = 0.00033, Sum P(5) = 0.00033
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
+IGKSG IN I+ + + V++ P K ++ I
Sbjct: 359 LIGKSGANINRIKDQYKVSVRI--PPDSEKSNLIRI 392
Score = 48 (22.0 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 584 GATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMAT 624
G + +D S R + +ISG E+ AA+ ++A + T
Sbjct: 843 GRDAKEADPGSPRRCDIIIISGRKEKCEAAKEALEALVPVT 883
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(5) = 0.00033
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 567 KVIGKAGSNLANIRKISGATIEMSDSK--SSRGDRVALISGTPEQKRAAENLI 617
K+IG+ G+ + IR I+ D S D++ I+G + AA + I
Sbjct: 975 KIIGRKGAVITQIRLEHDVNIQFPDKDDGSQPQDQIT-ITGYEKNTEAARDAI 1026
Score = 44 (20.5 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP 75
VIGK+G+ + + +T ++++ P
Sbjct: 74 VIGKNGEKLQDLELKTATKIQIPRP 98
Score = 43 (20.2 bits), Expect = 0.00050, Sum P(5) = 0.00050
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVT 85
+ G +++ I QET R+ + P + V T
Sbjct: 146 IAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFT 180
Score = 38 (18.4 bits), Expect = 0.00033, Sum P(5) = 0.00033
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 419 KADVRISKGDKPKCADANDEL 439
+ D+ I G K KC A + L
Sbjct: 856 RCDIIIISGRKEKCEAAKEAL 876
>RGD|620962 [details] [associations]
symbol:Hdlbp "high density lipoprotein binding protein"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006869 "lipid transport"
evidence=IEA] [GO:0008203 "cholesterol metabolic process"
evidence=IEA] [GO:0034364 "high-density lipoprotein particle"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:620962 GO:GO:0005634
GO:GO:0005737 GO:GO:0006869 GO:GO:0008203 GO:GO:0003723
GO:GO:0034364 eggNOG:NOG313207 HOGENOM:HOG000007687
HOVERGEN:HBG054107 OrthoDB:EOG4M65GT EMBL:U90725 IPI:IPI00208598
UniGene:Rn.8515 ProteinModelPortal:Q9Z1A6 SMR:Q9Z1A6 IntAct:Q9Z1A6
PhosphoSite:Q9Z1A6 PRIDE:Q9Z1A6 UCSC:RGD:620962 InParanoid:Q9Z1A6
ArrayExpress:Q9Z1A6 Genevestigator:Q9Z1A6
GermOnline:ENSRNOG00000031479 Uniprot:Q9Z1A6
Length = 1268
Score = 88 (36.0 bits), Expect = 0.00095, Sum P(4) = 0.00095
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
IR ++K +IGKGGG I+ +R ++GA+I + +++D+ +IT+ E D ++
Sbjct: 732 IRAKPEYHKF--LIGKGGGKIRKVRDSTGARI-IFPAAEDKDQDLITIIGKE--DAVREA 786
Query: 370 AVEAVLLLQTKINDEDD 386
E L+Q N +D
Sbjct: 787 QKELEALIQNLDNVVED 803
Score = 86 (35.3 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+V+ LV S S + + + F+K +IGKGG IK IR+ S +ID+ N + V
Sbjct: 573 MVADLVENSYS--ISVPIFKQFHK--NIIGKGGANIKKIREESNTKIDLPAENSNSETIV 628
Query: 355 IT 356
IT
Sbjct: 629 IT 630
Score = 74 (31.1 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
++K+K+ + V SQ +IG G +++ + +T S+++ P D+ T
Sbjct: 289 EEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISET-------- 340
Query: 193 NFVLISGESEAVKKALFAISAIMYKFS 219
V++ GE E + +AL + A F+
Sbjct: 341 --VILRGEPEKLGQALTEVYAKANSFT 365
Score = 70 (29.7 bits), Expect = 0.00095, Sum P(4) = 0.00095
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEPT 184
NIIGK GA IK++R ++ T I + ++++ T
Sbjct: 595 NIIGKGGANIKKIREESNTKIDLPAENSNSET 626
Score = 66 (28.3 bits), Expect = 0.00064, Sum P(4) = 0.00064
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKA 207
++IGK+GA I R++ + + S+++ P D+ E N + I G+ + V++A
Sbjct: 449 HLIGKSGANINRIKDQYKVSVRIPP-DS---------EKSNLIRIEGDPQGVQQA 493
Score = 60 (26.2 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
+IGK G + +R +GA I ++ D + +I G + R A+ ++A I
Sbjct: 742 LIGKGGGKIRKVRDSTGARIIFPAAEDKDQDLITII-GKEDAVREAQKELEALI 794
Score = 49 (22.3 bits), Expect = 0.00095, Sum P(4) = 0.00095
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
+IGKSG IN I+ + + V++ P K ++ I
Sbjct: 450 LIGKSGANINRIKDQYKVSVRI--PPDSEKSNLIRI 483
Score = 47 (21.6 bits), Expect = 0.00095, Sum P(4) = 0.00095
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 584 GATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMAT 624
G + +D S R + +ISG E+ AA+ ++A + T
Sbjct: 934 GREAKETDPGSPRRCDIIVISGRKEKCEAAKEALEALVPVT 974
Score = 44 (20.5 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP 75
VIGK+G+ + + +T ++++ P
Sbjct: 165 VIGKNGEKLQDLELKTATKIQIPRP 189
Score = 43 (20.2 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVT 85
+ G +++ I QET R+ + P + V T
Sbjct: 237 IAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFT 271
>UNIPROTKB|Q3KRF2 [details] [associations]
symbol:Hdlbp "High density lipoprotein binding protein,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:620962 GO:GO:0005737 GO:GO:0003723 EMBL:CH473997
GeneTree:ENSGT00690000102206 CTD:3069 HOVERGEN:HBG054107
OMA:YEKNTEA UniGene:Rn.8515 EMBL:BC105748 IPI:IPI00882548
RefSeq:NP_742036.2 SMR:Q3KRF2 Ensembl:ENSRNOT00000051155
GeneID:64474 KEGG:rno:64474 InParanoid:Q3KRF2 NextBio:613266
Genevestigator:Q3KRF2 Uniprot:Q3KRF2
Length = 1268
Score = 88 (36.0 bits), Expect = 0.00095, Sum P(4) = 0.00095
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
IR ++K +IGKGGG I+ +R ++GA+I + +++D+ +IT+ E D ++
Sbjct: 732 IRAKPEYHKF--LIGKGGGKIRKVRDSTGARI-IFPAAEDKDQDLITIIGKE--DAVREA 786
Query: 370 AVEAVLLLQTKINDEDD 386
E L+Q N +D
Sbjct: 787 QKELEALIQNLDNVVED 803
Score = 86 (35.3 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+V+ LV S S + + + F+K +IGKGG IK IR+ S +ID+ N + V
Sbjct: 573 MVADLVENSYS--ISVPIFKQFHK--NIIGKGGANIKKIREESNTKIDLPAENSNSETIV 628
Query: 355 IT 356
IT
Sbjct: 629 IT 630
Score = 74 (31.1 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
++K+K+ + V SQ +IG G +++ + +T S+++ P D+ T
Sbjct: 289 EEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISET-------- 340
Query: 193 NFVLISGESEAVKKALFAISAIMYKFS 219
V++ GE E + +AL + A F+
Sbjct: 341 --VILRGEPEKLGQALTEVYAKANSFT 365
Score = 70 (29.7 bits), Expect = 0.00095, Sum P(4) = 0.00095
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEPT 184
NIIGK GA IK++R ++ T I + ++++ T
Sbjct: 595 NIIGKGGANIKKIREESNTKIDLPAENSNSET 626
Score = 66 (28.3 bits), Expect = 0.00064, Sum P(4) = 0.00064
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKA 207
++IGK+GA I R++ + + S+++ P D+ E N + I G+ + V++A
Sbjct: 449 HLIGKSGANINRIKDQYKVSVRIPP-DS---------EKSNLIRIEGDPQGVQQA 493
Score = 60 (26.2 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
+IGK G + +R +GA I ++ D + +I G + R A+ ++A I
Sbjct: 742 LIGKGGGKIRKVRDSTGARIIFPAAEDKDQDLITII-GKEDAVREAQKELEALI 794
Score = 49 (22.3 bits), Expect = 0.00095, Sum P(4) = 0.00095
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
+IGKSG IN I+ + + V++ P K ++ I
Sbjct: 450 LIGKSGANINRIKDQYKVSVRI--PPDSEKSNLIRI 483
Score = 47 (21.6 bits), Expect = 0.00095, Sum P(4) = 0.00095
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 584 GATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMAT 624
G + +D S R + +ISG E+ AA+ ++A + T
Sbjct: 934 GREAKETDPGSPRRCDIIVISGRKEKCEAAKEALEALVPVT 974
Score = 44 (20.5 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP 75
VIGK+G+ + + +T ++++ P
Sbjct: 165 VIGKNGEKLQDLELKTATKIQIPRP 189
Score = 43 (20.2 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVT 85
+ G +++ I QET R+ + P + V T
Sbjct: 237 IAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFT 271
>UNIPROTKB|G8JLA5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:G8JLA5 SMR:G8JLA5
Ensembl:ENST00000347476 Bgee:G8JLA5 Uniprot:G8JLA5
Length = 109
Score = 102 (41.0 bits), Expect = 0.00012, P = 0.00012
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIESPDDIK 367
++++ P + G +IGKGG T+K++ + SGA + + D N E V+TV+ P+ +
Sbjct: 28 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSG--EPEQNR 85
Query: 368 SMAVEAVLLLQTKINDE 384
AVE L++Q KI ++
Sbjct: 86 K-AVE--LIIQ-KIQED 98
>MGI|MGI:2652843 [details] [associations]
symbol:Mex3c "mex3 homolog C (C. elegans)" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50089 SMART:SM00184 SMART:SM00322 MGI:MGI:2652843
Prosite:PS00518 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0016874 GO:GO:0008270 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 HOVERGEN:HBG071698 KO:K15686 eggNOG:NOG260228
HOGENOM:HOG000236282 CTD:51320 OMA:SQTIWTP OrthoDB:EOG4PK27W
EMBL:AC134447 EMBL:BC108422 EMBL:BC125427 IPI:IPI00788371
RefSeq:NP_001034303.3 UniGene:Mm.24131 UniGene:Mm.436942
ProteinModelPortal:Q05A36 SMR:Q05A36 STRING:Q05A36
PhosphoSite:Q05A36 PRIDE:Q05A36 Ensembl:ENSMUST00000091852
GeneID:240396 KEGG:mmu:240396 UCSC:uc008fot.2
GeneTree:ENSGT00390000018714 InParanoid:Q05A36 NextBio:384570
Bgee:Q05A36 CleanEx:MM_MEX3C Genevestigator:Q05A36 Uniprot:Q05A36
Length = 652
Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
+K EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 220 RKSVNTTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 268
Score = 81 (33.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 29/99 (29%), Positives = 48/99 (48%)
Query: 292 GLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRD 351
GLS L G + ++V P+ +G V+G G TIK I+Q + I V ++D
Sbjct: 309 GLSCSPNLPG-----QTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYI-VTPSRDK-- 360
Query: 352 ECVITVTAIESPDDIKSMAVEAVLLLQT----KINDEDD 386
E V VT + D +E + ++T ++N+E+D
Sbjct: 361 EPVFEVTGMPENVDRAREEIEMHIAMRTGNYIELNEEND 399
>UNIPROTKB|Q5U5Q3 [details] [associations]
symbol:MEX3C "RNA-binding E3 ubiquitin-protein ligase
MEX3C" species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016874
"ligase activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR001841
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50089 SMART:SM00184 SMART:SM00322 Prosite:PS00518
GO:GO:0043231 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0016874 GO:GO:0008270 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 HOVERGEN:HBG071698 KO:K15686 eggNOG:NOG260228
HOGENOM:HOG000236282 EMBL:AY950679 EMBL:AC090330 EMBL:BC041122
EMBL:AF208855 IPI:IPI00790901 RefSeq:NP_057710.3 UniGene:Hs.465144
ProteinModelPortal:Q5U5Q3 SMR:Q5U5Q3 IntAct:Q5U5Q3 STRING:Q5U5Q3
PhosphoSite:Q5U5Q3 DMDM:134047827 PRIDE:Q5U5Q3 DNASU:51320
Ensembl:ENST00000406189 GeneID:51320 KEGG:hsa:51320 UCSC:uc002lfc.4
CTD:51320 GeneCards:GC18M048700 HGNC:HGNC:28040 HPA:HPA040603
MIM:611005 neXtProt:NX_Q5U5Q3 PharmGKB:PA162395821
InParanoid:Q5U5Q3 OMA:SQTIWTP OrthoDB:EOG4PK27W GenomeRNAi:51320
NextBio:54697 ArrayExpress:Q5U5Q3 Bgee:Q5U5Q3 CleanEx:HS_MEX3C
Genevestigator:Q5U5Q3 Uniprot:Q5U5Q3
Length = 659
Score = 92 (37.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 134 KKRKEKEECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
+K EC + VPSS+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 227 RKSVNTTEC-VPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 275
Score = 81 (33.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 29/99 (29%), Positives = 48/99 (48%)
Query: 292 GLSLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRD 351
GLS L G + ++V P+ +G V+G G TIK I+Q + I V ++D
Sbjct: 316 GLSCSPNLPG-----QTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYI-VTPSRDK-- 367
Query: 352 ECVITVTAIESPDDIKSMAVEAVLLLQT----KINDEDD 386
E V VT + D +E + ++T ++N+E+D
Sbjct: 368 EPVFEVTGMPENVDRAREEIEMHIAMRTGNYIELNEEND 406
>UNIPROTKB|E2RET1 [details] [associations]
symbol:HDLBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0003723 GeneTree:ENSGT00690000102206 OMA:YEKNTEA
EMBL:AAEX03014560 Ensembl:ENSCAFT00000020547 NextBio:20852909
Uniprot:E2RET1
Length = 1268
Score = 90 (36.7 bits), Expect = 0.00047, Sum P(5) = 0.00047
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
IR ++K +IGKGGG I+ +R +GA+I + T +++D+ +IT+ E D ++
Sbjct: 732 IRAKPEYHKF--LIGKGGGKIRKVRDNTGARI-IFPTAEDKDQDLITIIGKE--DAVREA 786
Query: 370 AVEAVLLLQTKINDEDD 386
E L+Q N +D
Sbjct: 787 QKELEALIQNLDNVVED 803
Score = 85 (35.0 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+V+ LV S S + + + F+K +IGKGG IK IR+ S +ID+ N + +
Sbjct: 573 MVADLVENSYS--ISVPIFKQFHK--NIIGKGGANIKKIREESNTKIDLPAENSNSETII 628
Query: 355 IT 356
IT
Sbjct: 629 IT 630
Score = 74 (31.1 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
++K+K+ + V SQ +IG G +++ + +T S+++ P D+ T
Sbjct: 289 EEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISET-------- 340
Query: 193 NFVLISGESEAVKKALFAISAIMYKFS 219
V++ GE E + +AL + A F+
Sbjct: 341 --VILRGEPEKLGQALTEVYAKANSFT 365
Score = 70 (29.7 bits), Expect = 0.00047, Sum P(5) = 0.00047
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEPT 184
NIIGK GA IK++R ++ T I + ++++ T
Sbjct: 595 NIIGKGGANIKKIREESNTKIDLPAENSNSET 626
Score = 60 (26.2 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
+IGK G + +R +GA I ++ D + +I G + R A+ ++A I
Sbjct: 742 LIGKGGGKIRKVRDNTGARIIFPTAEDKDQDLITII-GKEDAVREAQKELEALI 794
Score = 49 (22.3 bits), Expect = 0.00047, Sum P(5) = 0.00047
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
+IGKSG IN I+ + + V++ P K ++ I
Sbjct: 450 LIGKSGANINRIKDQYKVSVRI--PPDSEKSNLIRI 483
Score = 48 (22.0 bits), Expect = 0.00048, Sum P(4) = 0.00048
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 584 GATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMAT 624
G + +D S R + +ISG E+ AA+ ++A + T
Sbjct: 934 GRDAKEADPGSPRRCDIIIISGRKEKCEAAKEALEALVPVT 974
Score = 47 (21.6 bits), Expect = 0.00047, Sum P(5) = 0.00047
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 567 KVIGKAGSNLANIRKISGATIEMSDSK--SSRGDRVALISGTPEQKRAAENLI 617
K+IG+ G+ + IR I+ D S D++ I+G + AA + I
Sbjct: 1066 KIIGRKGAVITQIRLEHDVNIQFPDKDDGSQPQDQIT-ITGYEKNTEAARDAI 1117
Score = 44 (20.5 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP 75
VIGK+G+ + + +T ++++ P
Sbjct: 165 VIGKNGEKLQDLELKTATKIQIPRP 189
Score = 43 (20.2 bits), Expect = 0.00072, Sum P(5) = 0.00071
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVT 85
+ G +++ I QET R+ + P + V T
Sbjct: 237 IAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFT 271
Score = 38 (18.4 bits), Expect = 0.00047, Sum P(5) = 0.00047
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 419 KADVRISKGDKPKCADANDEL 439
+ D+ I G K KC A + L
Sbjct: 947 RCDIIIISGRKEKCEAAKEAL 967
>MGI|MGI:99256 [details] [associations]
symbol:Hdlbp "high density lipoprotein (HDL) binding protein"
species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006629 "lipid metabolic process"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0006869
"lipid transport" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008202 "steroid metabolic process" evidence=IEA]
[GO:0008203 "cholesterol metabolic process" evidence=IEA]
[GO:0034364 "high-density lipoprotein particle" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:99256 GO:GO:0005634 GO:GO:0005737
GO:GO:0006869 GO:GO:0008203 GO:GO:0003723 GO:GO:0034364
eggNOG:NOG313207 GeneTree:ENSGT00690000102206 CTD:3069
HOGENOM:HOG000007687 HOVERGEN:HBG054107 OMA:YEKNTEA
OrthoDB:EOG4M65GT ChiTaRS:HDLBP EMBL:BC021765 EMBL:BC023806
EMBL:BC025648 EMBL:BC027779 EMBL:BC027788 EMBL:BC035301
IPI:IPI00123379 RefSeq:NP_598569.1 UniGene:Mm.30012
ProteinModelPortal:Q8VDJ3 SMR:Q8VDJ3 STRING:Q8VDJ3
PhosphoSite:Q8VDJ3 PaxDb:Q8VDJ3 PRIDE:Q8VDJ3
Ensembl:ENSMUST00000042498 Ensembl:ENSMUST00000170883 GeneID:110611
KEGG:mmu:110611 InParanoid:Q8VDJ3 NextBio:364327 Bgee:Q8VDJ3
CleanEx:MM_HDLBP Genevestigator:Q8VDJ3
GermOnline:ENSMUSG00000034088 Uniprot:Q8VDJ3
Length = 1268
Score = 88 (36.0 bits), Expect = 0.00077, Sum P(4) = 0.00077
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
IR ++K +IGKGGG I+ +R ++GA+I + +++D+ +IT+ E D ++
Sbjct: 732 IRAKPEYHKF--LIGKGGGKIRKVRDSTGARI-IFPAAEDKDQDLITIIGKE--DAVREA 786
Query: 370 AVEAVLLLQTKINDEDD 386
E L+Q N +D
Sbjct: 787 QKELEALIQNLENVVED 803
Score = 85 (35.0 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+V+ LV S S + + + F+K +IGKGG IK IR+ S +ID+ N + +
Sbjct: 573 MVADLVENSYS--ISVPIFKQFHK--NIIGKGGANIKKIREESNTKIDLPAENSNSETII 628
Query: 355 IT 356
IT
Sbjct: 629 IT 630
Score = 74 (31.1 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
++K+K+ + V SQ +IG G +++ + +T S+++ P D+ T
Sbjct: 289 EEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISET-------- 340
Query: 193 NFVLISGESEAVKKALFAISAIMYKFS 219
V++ GE E + +AL + A F+
Sbjct: 341 --VILRGEPEKLGQALTEVYAKANSFT 365
Score = 70 (29.7 bits), Expect = 0.00077, Sum P(4) = 0.00077
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEPT 184
NIIGK GA IK++R ++ T I + ++++ T
Sbjct: 595 NIIGKGGANIKKIREESNTKIDLPAENSNSET 626
Score = 60 (26.2 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
+IGK G + +R +GA I ++ D + +I G + R A+ ++A I
Sbjct: 742 LIGKGGGKIRKVRDSTGARIIFPAAEDKDQDLITII-GKEDAVREAQKELEALI 794
Score = 49 (22.3 bits), Expect = 0.00077, Sum P(4) = 0.00077
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
+IGKSG IN I+ + + V++ P K ++ I
Sbjct: 450 LIGKSGANINRIKDQYKVSVRI--PPDSEKSNLIRI 483
Score = 48 (22.0 bits), Expect = 0.00077, Sum P(4) = 0.00077
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 584 GATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMAT 624
G + +D S R + +ISG E+ AA+ ++A + T
Sbjct: 934 GREAKETDPGSPRRCDIIIISGRKEKCEAAKEALEALVPVT 974
Score = 44 (20.5 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP 75
VIGK+G+ + + +T ++++ P
Sbjct: 165 VIGKNGEKLQDLELKTATKIQIPRP 189
>WB|WBGene00010908 [details] [associations]
symbol:M88.5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:Z34802 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 PIR:T23837 RefSeq:NP_001022695.1
ProteinModelPortal:Q21605 SMR:Q21605 IntAct:Q21605 STRING:Q21605
PaxDb:Q21605 PRIDE:Q21605 EnsemblMetazoa:M88.5a GeneID:175595
KEGG:cel:CELE_M88.5 UCSC:M88.5a CTD:175595 WormBase:M88.5a
HOGENOM:HOG000021364 InParanoid:Q21605 OMA:FPIHSAS NextBio:888828
ArrayExpress:Q21605 Uniprot:Q21605
Length = 828
Score = 87 (35.7 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 288 VYSTGLSLVSGLVGASQSEELVIR--VLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDD 345
+ T SL S + +S L IR V P IGR+IGKGG ++ +++ +GA + + +
Sbjct: 660 IAETSSSLPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPE 719
Query: 346 TKDNRDE 352
+ N E
Sbjct: 720 EERNGGE 726
Score = 74 (31.1 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 10/34 (29%), Positives = 25/34 (73%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGD 598
+G++IGK G N+ +++I+GA +++ + + + G+
Sbjct: 693 IGRIIGKGGQNVRELQRITGAVVKIPEEERNGGE 726
Score = 71 (30.1 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 154 IIGKAGATIKRLRSKTRTSIKVT-----PKDASEPTHSCAMEF-DNFVLISGES-EAVKK 206
+IGKAG++IK + KT T+I VT P S T + + + +++ G S EAV +
Sbjct: 413 LIGKAGSSIKEIMQKTGTNITVTKYIEPPGGISGLTANELLGLMERTIMVRGPSIEAVVQ 472
Query: 207 ALFAISAIMYK 217
A ISA + K
Sbjct: 473 AEALISAKLKK 483
Score = 58 (25.5 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVD--DTKDNRD 351
+R+ P + IG +IG G IK I + +GA + ++ + K R+
Sbjct: 543 VRMWVPDSMIGALIGAKGKNIKMIIRDTGASVKIEAPEEKTQRE 586
Score = 53 (23.7 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 51 VIGKSGKVINSIRQETRARVKVVD------PFPGAKDRVVTIY 87
+IG +G I I TR RV V+ G DR++T++
Sbjct: 325 IIGPNGSTIKDIASSTRCRVDFVNLSKKERTVLGNNDRILTVH 367
>WB|WBGene00019692 [details] [associations]
symbol:M01A10.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0006898 GO:GO:0003723 eggNOG:NOG300923
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:FO081508 RefSeq:NP_491627.2 ProteinModelPortal:P91393
SMR:P91393 STRING:P91393 PaxDb:P91393 EnsemblMetazoa:M01A10.1
GeneID:187350 KEGG:cel:CELE_M01A10.1 UCSC:M01A10.1 CTD:187350
WormBase:M01A10.1 HOGENOM:HOG000018892 InParanoid:P91393
OMA:KARIMET NextBio:934978 Uniprot:P91393
Length = 586
Score = 80 (33.2 bits), Expect = 0.00016, Sum P(3) = 0.00015
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 312 VLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAV 371
+L P +K G VIG+GG TI+ I + SGA ++ +RD +++AIE I+
Sbjct: 321 MLIPASKCGLVIGRGGETIRQINKESGAYCEM-----SRDP---SISAIEKQFVIRGSET 372
Query: 372 E---AVLLLQTKINDEDDDT 388
+ A L++ K+ D +T
Sbjct: 373 QVEHAKHLIRVKVGDIPPNT 392
Score = 79 (32.9 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEMS-DSKSSRGDRVALISGTPEQKRAAENLIQ 618
A+ G VIG+ G + I K SGA EMS D S ++ +I G+ Q A++LI+
Sbjct: 325 ASKCGLVIGRGGETIRQINKESGAYCEMSRDPSISAIEKQFVIRGSETQVEHAKHLIR 382
Score = 69 (29.3 bits), Expect = 0.00016, Sum P(3) = 0.00015
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179
Q+ VP S I+G G+ IK++ ++T T I+ P D
Sbjct: 240 QVKVPRSTVGAIMGLQGSNIKKISNETETKIQFMPDD 276
Score = 63 (27.2 bits), Expect = 0.00016, Sum P(3) = 0.00015
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 44 PDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIY 87
P+ +G VIG++G I +I Q++ RV++V R V IY
Sbjct: 59 PEESVGLVIGRNGVEIQAISQKSGCRVQIVAEPSTTGYRSVDIY 102
>UNIPROTKB|Q00341 [details] [associations]
symbol:HDLBP "Vigilin" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006869 "lipid
transport" evidence=IEA] [GO:0008203 "cholesterol metabolic
process" evidence=IEA] [GO:0034364 "high-density lipoprotein
particle" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=TAS] [GO:0008289 "lipid
binding" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
GO:GO:0006869 GO:GO:0008203 GO:GO:0003723 GO:GO:0008289
EMBL:AC104841 GO:GO:0034364 eggNOG:NOG313207 CTD:3069
HOGENOM:HOG000007687 HOVERGEN:HBG054107 EMBL:M64098 EMBL:AK300312
EMBL:BC001179 IPI:IPI00022228 IPI:IPI00894287 PIR:A44125
RefSeq:NP_001230829.1 RefSeq:NP_005327.1 RefSeq:NP_976221.1
UniGene:Hs.471851 UniGene:Hs.732361 PDB:1VIG PDB:1VIH PDB:2CTE
PDB:2CTF PDB:2CTJ PDB:2CTK PDB:2CTL PDB:2CTM PDBsum:1VIG
PDBsum:1VIH PDBsum:2CTE PDBsum:2CTF PDBsum:2CTJ PDBsum:2CTK
PDBsum:2CTL PDBsum:2CTM ProteinModelPortal:Q00341 SMR:Q00341
IntAct:Q00341 MINT:MINT-1189333 STRING:Q00341 PhosphoSite:Q00341
DMDM:218511884 PaxDb:Q00341 PeptideAtlas:Q00341 PRIDE:Q00341
DNASU:3069 Ensembl:ENST00000310931 Ensembl:ENST00000391975
Ensembl:ENST00000391976 Ensembl:ENST00000427183 GeneID:3069
KEGG:hsa:3069 UCSC:uc002waz.3 GeneCards:GC02M242188 HGNC:HGNC:4857
HPA:CAB026457 HPA:HPA004189 MIM:142695 neXtProt:NX_Q00341
PharmGKB:PA29235 InParanoid:Q00341 OMA:YEKNTEA OrthoDB:EOG4M65GT
PhylomeDB:Q00341 ChiTaRS:HDLBP EvolutionaryTrace:Q00341
GenomeRNAi:3069 NextBio:12141 ArrayExpress:Q00341 Bgee:Q00341
CleanEx:HS_HDLBP Genevestigator:Q00341 GermOnline:ENSG00000115677
Uniprot:Q00341
Length = 1268
Score = 85 (35.0 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+V+ LV S S + + + F+K +IGKGG IK IR+ S +ID+ N + +
Sbjct: 573 MVADLVENSYS--ISVPIFKQFHK--NIIGKGGANIKKIREESNTKIDLPAENSNSETII 628
Query: 355 IT 356
IT
Sbjct: 629 IT 630
Score = 74 (31.1 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
++K+K+ + V SQ +IG G +++ + +T S+++ P D+ T
Sbjct: 289 EEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISET-------- 340
Query: 193 NFVLISGESEAVKKALFAISAIMYKFS 219
V++ GE E + +AL + A F+
Sbjct: 341 --VILRGEPEKLGQALTEVYAKANSFT 365
Score = 59 (25.8 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
+IGK G + +R +GA + ++ D + +I G + R A+ ++A I
Sbjct: 742 LIGKGGGKIRKVRDSTGARVIFPAAEDKDQDLITII-GKEDAVREAQKELEALI 794
Score = 44 (20.5 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP 75
VIGK+G+ + + +T ++++ P
Sbjct: 165 VIGKNGEKLQDLELKTATKIQIPRP 189
Score = 43 (20.2 bits), Expect = 0.00022, Sum P(4) = 0.00022
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVT 85
+ G +++ I QET R+ + P + V T
Sbjct: 237 IAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFT 271
>UNIPROTKB|F1RLQ1 [details] [associations]
symbol:MEX3A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50089
SMART:SM00184 SMART:SM00322 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083 OMA:GYSGYLF
GeneTree:ENSGT00390000018714 EMBL:CU302298
Ensembl:ENSSSCT00000007116 Uniprot:F1RLQ1
Length = 424
Score = 87 (35.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 141 ECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
EC + VP+S+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 39 EC-VPVPTSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 80
Score = 80 (33.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
++ IRV P+ +G V+G G TIK I+Q + I + ++D RD V +T +
Sbjct: 128 QVTIRVRVPYRVVGLVVGPKGATIKRIQQQTNTYI-ITPSRD-RDP-VFEITGAPGNVER 184
Query: 367 KSMAVEAVLLLQT-KI---NDEDD 386
+E + ++T KI N+E+D
Sbjct: 185 AREEIETHIAVRTGKILEYNNEND 208
>CGD|CAL0001510 [details] [associations]
symbol:PBP2 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0010834 "telomere maintenance via
telomere shortening" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 CGD:CAL0001510 GO:GO:0003723
EMBL:AACQ01000046 EMBL:AACQ01000047 eggNOG:NOG315872
RefSeq:XP_718039.1 RefSeq:XP_718106.1 ProteinModelPortal:Q5A8H8
STRING:Q5A8H8 GeneID:3640267 GeneID:3640340 KEGG:cal:CaO19.13193
KEGG:cal:CaO19.5771 HOGENOM:HOG000247928 Uniprot:Q5A8H8
Length = 529
Score = 90 (36.7 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 14/74 (18%), Positives = 37/74 (50%)
Query: 13 DNDRDGKNQKRRINEKDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKV 72
D + + + ++ ++ + + R+ CP +++G+ G+ IN +R++ R+ V
Sbjct: 136 DQNTGSSSSSKPVSNHRDRDDPTFIQLRMYCPVKEASTIVGRKGETINHLREKANVRITV 195
Query: 73 VDPFPGAKDRVVTI 86
+ G +R+V +
Sbjct: 196 SENLKGVPERIVAV 209
Score = 62 (26.9 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 563 NAVGKVIGKAGSNLANIRKISGAT 586
+++G VIGK G+N+ +IR+ S T
Sbjct: 451 SSIGSVIGKRGNNIKHIRETSACT 474
Score = 59 (25.8 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 27/86 (31%), Positives = 38/86 (44%)
Query: 253 PNADPILPSRSVPSILGAARVPDLQGYADT-GNTWPVYSTGLSLVSGLVGASQSEELVIR 311
PNA + P PS+ +P + D GNT G + + + A Q ++
Sbjct: 397 PNA--VSPVGMQPSV----NIPPQNQFTDEFGNT----IVGEVITTPPIQAGQ-DKYNQD 445
Query: 312 VLCPFNKIGRVIGKGGGTIKSIRQAS 337
V + IG VIGK G IK IR+ S
Sbjct: 446 VFVANSSIGSVIGKRGNNIKHIRETS 471
Score = 56 (24.8 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQI 341
S++ +++L P IG +IGK G + I + S A++
Sbjct: 240 SQQYNLKLLIPHPMIGFIIGKQGLKFREIEENSAAKL 276
Score = 55 (24.4 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 16/73 (21%), Positives = 34/73 (46%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESE 202
++L+P IIGK G + + + +K A+E ++ D + + G +
Sbjct: 246 KLLIPHPMIGFIIGKQGLKFREIEENSAAKLK-----AAE--NALPYSTDRVLSVMGVGD 298
Query: 203 AVKKALFAISAIM 215
A+ A++ I+ +M
Sbjct: 299 AIHIAVYYIAQVM 311
>UNIPROTKB|E1B7I1 [details] [associations]
symbol:MEX3A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50089
SMART:SM00184 SMART:SM00322 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083 OMA:GYSGYLF
GeneTree:ENSGT00390000018714 EMBL:DAAA02007146 IPI:IPI00715039
Ensembl:ENSBTAT00000025498 Uniprot:E1B7I1
Length = 484
Score = 87 (35.7 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 141 ECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
EC + VP+S+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 98 EC-VPVPTSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 139
Score = 80 (33.2 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
++ IRV P+ +G V+G G TIK I+Q + I + ++D RD V +T +
Sbjct: 187 QVTIRVRVPYRVVGLVVGPKGATIKRIQQQTNTYI-ITPSRD-RDP-VFEITGAPGNVER 243
Query: 367 KSMAVEAVLLLQT-KI---NDEDD 386
+E + ++T KI N+E+D
Sbjct: 244 AREEIETHIAVRTGKILEYNNEND 267
>UNIPROTKB|Q9GZT1 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IDA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IDA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=IDA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007050 "cell
cycle arrest" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0008630
GO:GO:0006977 EMBL:CH471055 GO:GO:0007050 GO:GO:0003723
EMBL:AC115284 HOGENOM:HOG000182823 HOVERGEN:HBG053520
UniGene:Hs.20930 HGNC:HGNC:8652 NextBio:62848 EMBL:AF257770
EMBL:AF257772 IPI:IPI00006997 HSSP:Q9UNW9 SMR:Q9GZT1 STRING:Q9GZT1
Ensembl:ENST00000395014 UCSC:uc003dcc.2 Uniprot:Q9GZT1
Length = 424
Score = 98 (39.6 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQA 619
+G VIG+ GS ++ IR++SGA I++ + G+R I+G+P A+ LI A
Sbjct: 274 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITA 328
Score = 66 (28.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 143 QILVPSSQSANIIGKAGATIKRLR 166
++++P+SQ ++IGKAG IK +R
Sbjct: 71 RLVIPASQCGSLIGKAGTKIKEIR 94
Score = 64 (27.6 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 308 LVIRVLCPFNKIGRVIGKGGGTIKSIRQASG 338
+ +R++ P ++ G +IGK G IK IR+ G
Sbjct: 68 VTLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
>UNIPROTKB|A1L020 [details] [associations]
symbol:MEX3A "RNA-binding protein MEX3A" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50089 SMART:SM00184
SMART:SM00322 Prosite:PS00518 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0000932 EMBL:AY950677 IPI:IPI00385217 RefSeq:NP_001087194.1
UniGene:Hs.591496 ProteinModelPortal:A1L020 SMR:A1L020
PhosphoSite:A1L020 PRIDE:A1L020 Ensembl:ENST00000532414
GeneID:92312 KEGG:hsa:92312 UCSC:uc001fnd.4 CTD:92312
GeneCards:GC01M156041 HGNC:HGNC:33482 MIM:611007 neXtProt:NX_A1L020
PharmGKB:PA162395812 HOVERGEN:HBG071698 KO:K15686 OMA:GYSGYLF
GenomeRNAi:92312 NextBio:77692 Bgee:A1L020 CleanEx:HS_MEX3A
Genevestigator:A1L020 Uniprot:A1L020
Length = 520
Score = 87 (35.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 141 ECQILVPSSQS-ANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
EC + VP+S+ A I+G+ G IK LR+KT T IK TP EP
Sbjct: 134 EC-VPVPTSEHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 175
Score = 80 (33.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 307 ELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDI 366
++ IRV P+ +G V+G G TIK I+Q + I + ++D RD V +T +
Sbjct: 223 QVTIRVRVPYRVVGLVVGPKGATIKRIQQQTNTYI-ITPSRD-RDP-VFEITGAPGNVER 279
Query: 367 KSMAVEAVLLLQT-KI---NDEDD 386
+E + ++T KI N+E+D
Sbjct: 280 AREEIETHIAVRTGKILEYNNEND 303
>UNIPROTKB|H0Y394 [details] [associations]
symbol:HDLBP "Vigilin" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:AC104841 HGNC:HGNC:4857 ChiTaRS:HDLBP
ProteinModelPortal:H0Y394 Ensembl:ENST00000373292 Uniprot:H0Y394
Length = 973
Score = 87 (35.7 bits), Expect = 0.00065, Sum P(4) = 0.00065
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 310 IRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSM 369
IR ++K +IGKGGG I+ +R ++GA++ + +++D+ +IT+ E D ++
Sbjct: 541 IRAKPEYHKF--LIGKGGGKIRKVRDSTGARV-IFPAAEDKDQDLITIIGKE--DAVREA 595
Query: 370 AVEAVLLLQTKINDEDD 386
E L+Q N +D
Sbjct: 596 QKELEALIQNLDNVVED 612
Score = 85 (35.0 bits), Expect = 0.00035, Sum P(4) = 0.00035
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+V+ LV S S + + + F+K +IGKGG IK IR+ S +ID+ N + +
Sbjct: 382 MVADLVENSYS--ISVPIFKQFHK--NIIGKGGANIKKIREESNTKIDLPAENSNSETII 437
Query: 355 IT 356
IT
Sbjct: 438 IT 439
Score = 70 (29.7 bits), Expect = 0.00065, Sum P(4) = 0.00065
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEPT 184
NIIGK GA IK++R ++ T I + ++++ T
Sbjct: 404 NIIGKGGANIKKIREESNTKIDLPAENSNSET 435
Score = 66 (28.3 bits), Expect = 0.00035, Sum P(4) = 0.00035
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 153 NIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKA 207
++IGK+GA I R++ + + S+++ P D+ E N + I G+ + V++A
Sbjct: 258 HLIGKSGANINRIKDQYKVSVRIPP-DS---------EKSNLIRIEGDPQGVQQA 302
Score = 59 (25.8 bits), Expect = 0.00035, Sum P(4) = 0.00035
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621
+IGK G + +R +GA + ++ D + +I G + R A+ ++A I
Sbjct: 551 LIGKGGGKIRKVRDSTGARVIFPAAEDKDQDLITII-GKEDAVREAQKELEALI 603
Score = 49 (22.3 bits), Expect = 0.00065, Sum P(4) = 0.00065
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
+IGKSG IN I+ + + V++ P K ++ I
Sbjct: 259 LIGKSGANINRIKDQYKVSVRI--PPDSEKSNLIRI 292
Score = 45 (20.9 bits), Expect = 0.00065, Sum P(4) = 0.00065
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 591 DSKSSRGDRVALISGTPEQKRAAENLIQAFIMAT 624
D S R + +ISG E+ AA+ ++A + T
Sbjct: 750 DPGSPRRCDIIIISGRKEKCEAAKEALEALVPVT 783
Score = 44 (20.5 bits), Expect = 0.00035, Sum P(4) = 0.00035
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP 75
VIGK+G+ + + +T ++++ P
Sbjct: 43 VIGKNGEKLQDLELKTATKIQIPRP 67
>SGD|S000003616 [details] [associations]
symbol:SCP160 "Essential RNA-binding G protein effector of
mating response pathway" species:4932 "Saccharomyces cerevisiae"
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0000750 "pheromone-dependent signal
transduction involved in conjugation with cellular fusion"
evidence=IGI] [GO:0006348 "chromatin silencing at telomere"
evidence=IGI;IMP] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0045141 "meiotic telomere
clustering" evidence=IMP] [GO:0005789 "endoplasmic reticulum
membrane" evidence=IEA;IDA] [GO:0008298 "intracellular mRNA
localization" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0005844 "polysome"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=IEA]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0042175
"nuclear outer membrane-endoplasmic reticulum membrane network"
evidence=IDA] [GO:0001965 "G-protein alpha-subunit binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 SGD:S000003616 GO:GO:0007059
EMBL:BK006943 GO:GO:0005789 GO:GO:0031965 GO:GO:0003723
GO:GO:0030466 GO:GO:0006348 GO:GO:0000750 GO:GO:0005844 EMBL:X83502
EMBL:X88851 GO:GO:0008298 GO:GO:0045141 EMBL:Z49354 EMBL:X65645
EMBL:Z49355 EMBL:X04679 PIR:S56030 RefSeq:NP_012455.1
ProteinModelPortal:P06105 SMR:P06105 DIP:DIP-2742N IntAct:P06105
MINT:MINT-629783 STRING:P06105 PaxDb:P06105 PeptideAtlas:P06105
PRIDE:P06105 EnsemblFungi:YJL080C GeneID:853365 KEGG:sce:YJL080C
CYGD:YJL080c eggNOG:NOG313207 GeneTree:ENSGT00690000102206
HOGENOM:HOG000246781 OMA:DLDYELF OrthoDB:EOG4ZKNVH NextBio:973795
Genevestigator:P06105 GermOnline:YJL080C Uniprot:P06105
Length = 1222
Score = 85 (35.0 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDN---RDECV-ITVT 358
S S + + V P N + R+IG G ++ IR+ QID+ + ++N +D+ V +T+T
Sbjct: 630 SPSSKSKMTVNIPANSVARLIGNKGSNLQQIREKFACQIDIPNEENNNASKDKTVEVTLT 689
Query: 359 AIE 361
+E
Sbjct: 690 GLE 692
Score = 76 (31.8 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 28/94 (29%), Positives = 45/94 (47%)
Query: 134 KKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAME-FD 192
KK + I VPS A+IIG G TI+ + I V+ K+ +E ++ M+
Sbjct: 172 KKLTKPINAVIEVPSKCKASIIGSGGRTIREISDAYEVKINVS-KEVNENSYDEDMDDTT 230
Query: 193 NFVLISGESEAVKKALFAISAIMYKFSPREDIPL 226
+ V + G+ E+V A I AI+ + + I L
Sbjct: 231 SNVSLFGDFESVNLAKAKILAIVKEETKNATIKL 264
Score = 57 (25.1 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATIEM----SDSKSSRGDRVAL-ISGTPEQKRAAENL 616
A V ++IGK G N+ +IR G ++ +D K+ V L I+G+ + + A
Sbjct: 791 AEHVPRIIGKNGDNINDIRAEYGVEMDFLQKSTDPKAQETGEVELEITGSRQNIKDAAKR 850
Query: 617 IQAFI 621
+++ +
Sbjct: 851 VESIV 855
Score = 56 (24.8 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 568 VIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQ-KRAAENLIQA 619
++G GSN+ IR+ + I + KS + + V I GT ++A E ++++
Sbjct: 1168 IVGPGGSNIKKIREAADVIINVP-RKSDKVNDVVYIRGTKAGVEKAGEMVLKS 1219
>UNIPROTKB|Q5T6W2 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00910458 SMR:Q5T6W2 Ensembl:ENST00000457156
Uniprot:Q5T6W2
Length = 379
Score = 84 (34.6 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGE 200
E ++L+ S + IIG GA IK LR T+T+IK+ + C D VLI G+
Sbjct: 122 ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-------CCPHSTDRVVLIGGK 174
Query: 201 SEAVKKAL 208
+ V + +
Sbjct: 175 PDRVVECI 182
Score = 79 (32.9 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 28 KDEKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
K + +E V RIL G+VIGK GK I ++R + A V V D +R+++I
Sbjct: 34 KRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS--SGPERILSI 90
>UNIPROTKB|F1LU04 [details] [associations]
symbol:F1LU04 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 IPI:IPI00777998
Ensembl:ENSRNOT00000016081 Uniprot:F1LU04
Length = 358
Score = 71 (30.1 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 565 VGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLI 617
+G +IG+ G+ + I ++SGA I++++ + S DR I+G A+ LI
Sbjct: 293 IGCIIGRQGAKINEIHQMSGAQIKIANPEGST-DRQVTITGPAASISLAQYLI 344
Score = 66 (28.3 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 305 SEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPD 364
S + R++ P ++ G +IGKG IK + + +G D N E I + +I P
Sbjct: 103 SRPVTSRLVVPDSQCGSLIGKGICKIKEVGETTGPVQVAGDMLPNSSEQAIPIASI--PQ 160
Query: 365 DIKSMAVE-AVLLLQTK 380
I + V++L+T+
Sbjct: 161 SIIECVNQIGVVMLETQ 177
Score = 63 (27.2 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 30 EKGNEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
E G ++ R+L +GS+IGK G+ + R+E+ A + + + +R++T+
Sbjct: 19 EGGLNVTLTIRLLMQGKEVGSIIGKKGESVKK-REESGAHLNISEG--NCPERIITL 72
>UNIPROTKB|E9PKN8 [details] [associations]
symbol:TDRKH "Tudor and KH domain-containing protein"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005739 GO:GO:0003723 EMBL:AL589765 HGNC:HGNC:11713
IPI:IPI00981760 ProteinModelPortal:E9PKN8 SMR:E9PKN8
Ensembl:ENST00000526378 ArrayExpress:E9PKN8 Bgee:E9PKN8
Uniprot:E9PKN8
Length = 131
Score = 96 (38.9 bits), Expect = 0.00051, P = 0.00051
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 306 EELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDD 365
+++ I + P + +IG+ G IK +R+ +GA+IDVD T+D DE V+ ++
Sbjct: 51 DDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVD-TEDVGDERVLLISGFPVQVC 109
Query: 366 IKSMAVEAVLLLQTKINDE 384
A+ +L T ++++
Sbjct: 110 KAKAAIHQILTENTPVSEQ 128
>UNIPROTKB|F1PAZ0 [details] [associations]
symbol:MEX3C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50089 SMART:SM00184
SMART:SM00322 GO:GO:0043231 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 Gene3D:3.30.40.10 InterPro:IPR013083 OMA:SQTIWTP
GeneTree:ENSGT00390000018714 EMBL:AAEX03000158 EMBL:AAEX03000159
Ensembl:ENSCAFT00000000262 Uniprot:F1PAZ0
Length = 621
Score = 85 (35.0 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEP 183
EC + VP A I+G+ G IK LR+KT T IK TP EP
Sbjct: 197 EC-VPVPRYHVAEIVGRQGCKIKALRAKTNTYIK-TPVRGEEP 237
Score = 82 (33.9 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 27/96 (28%), Positives = 48/96 (50%)
Query: 296 VSGL-VGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+ GL G + + ++V P+ +G V+G G TIK I+Q + I V ++D E V
Sbjct: 276 LGGLSCGPNLPGQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYI-VTPSRDK--EPV 332
Query: 355 ITVTAIESPDDIKSMAVEAVLLLQT----KINDEDD 386
VT + D +E + ++T ++N+E+D
Sbjct: 333 FEVTGMPENVDRAREEIEMHIAMRTGNYIELNEEND 368
>UNIPROTKB|K7GM69 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000034893 Uniprot:K7GM69
Length = 202
Score = 103 (41.3 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLI 197
E+E + +P+ IIGK GA IK+L SIK+ P A P S + V+I
Sbjct: 21 EQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAP--AEGPDVS-----ERMVII 73
Query: 198 SGESEAVKKALFAISAIMYK---FSPREDIPLETTVR 231
+G EA KA I + + F+P+E++ LE +R
Sbjct: 74 TGPPEAQFKAQGRIFGKLKEENFFNPKEEVKLEAHIR 110
Score = 46 (21.3 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 562 ANAVGKVIGKAGSNLANIRKISGATI 587
++ G+VIGK G + ++ ++ A +
Sbjct: 113 SSTAGRVIGKGGKTVNELQNLTSAEV 138
>UNIPROTKB|H3BSS4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 PRIDE:H3BSS4 Ensembl:ENST00000547859
Uniprot:H3BSS4
Length = 184
Score = 109 (43.4 bits), Expect = 0.00073, P = 0.00073
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 35 ESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTI 86
++ + + P+ +IG +IG+ G IN IRQ + A++K+ +P G+ DR VTI
Sbjct: 105 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 156
>SGD|S000000128 [details] [associations]
symbol:HEK2 "RNA binding protein involved in asymmetric
localization of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0008298 "intracellular mRNA localization" evidence=IMP;IPI]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0007004 "telomere maintenance via
telomerase" evidence=IMP;IPI] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=IDA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IGI;IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 SGD:S000000128 GO:GO:0006417
GO:GO:0003729 GO:GO:0016568 EMBL:BK006936 GO:GO:0048255 EMBL:X77291
GO:GO:0000932 GO:GO:0008298 GO:GO:0051028 GO:GO:0000784
GO:GO:0007004 EMBL:Z35793 EMBL:AY692814 PIR:S45766
RefSeq:NP_009521.1 ProteinModelPortal:P38199 SMR:P38199
DIP:DIP-3934N IntAct:P38199 MINT:MINT-506819 STRING:P38199
PaxDb:P38199 PeptideAtlas:P38199 EnsemblFungi:YBL032W GeneID:852248
KEGG:sce:YBL032W CYGD:YBL032w eggNOG:NOG294694 OMA:NSHISSI
OrthoDB:EOG4Z65XM NextBio:970814 Genevestigator:P38199
GermOnline:YBL032W Uniprot:P38199
Length = 381
Score = 73 (30.8 bits), Expect = 0.00073, Sum P(3) = 0.00073
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 143 QILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNF 194
+++V +S ++IIGKAGATIK L +K I V KD + +E F
Sbjct: 160 RLIVANSHISSIIGKAGATIKSLINKHGVKI-VASKDFLPASDERIIEIQGF 210
Score = 65 (27.9 bits), Expect = 0.00073, Sum P(3) = 0.00073
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 34 EESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVT 85
+ ++ +R+L +IG G I+ IR ++ + + PG DR+++
Sbjct: 41 QPTINHRLLLSLKEAAKIIGTKGSTISRIRAANAVKIGISEKVPGCSDRILS 92
Score = 61 (26.5 bits), Expect = 0.00073, Sum P(3) = 0.00073
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 303 SQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDV----DDTKDNRDECVITVT 358
S S I + P +G +IG+G IK+++ + I V DD KD I +T
Sbjct: 254 STSSNTRIELKIPELYVGAIIGRGMNRIKNLKTFTKTNIVVERKDDDDKDENFRKFI-IT 312
Query: 359 AIESPDDIKSMAVEAVLL--LQTKINDEDD 386
+ + P ++K E++LL L T+I ++
Sbjct: 313 S-KFPKNVK--LAESMLLKNLNTEIEKREN 339
>TAIR|locus:2012713 [details] [associations]
symbol:AT1G33680 "AT1G33680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084 SMART:SM00322
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0003723
eggNOG:NOG300923 KO:K13210 UniGene:At.39892 UniGene:At.71035
HOGENOM:HOG000242545 EMBL:AK229850 EMBL:AK229909 EMBL:AK230055
IPI:IPI00786006 RefSeq:NP_174629.3 ProteinModelPortal:Q0WLY0
SMR:Q0WLY0 STRING:Q0WLY0 PaxDb:Q0WLY0 PRIDE:Q0WLY0
EnsemblPlants:AT1G33680.1 GeneID:840259 KEGG:ath:AT1G33680
TAIR:At1g33680 InParanoid:Q0WLY0 OMA:PSYGSTP PhylomeDB:Q0WLY0
ProtClustDB:CLSN2690290 Genevestigator:Q0WLY0 Uniprot:Q0WLY0
Length = 763
Score = 99 (39.9 bits), Expect = 0.00084, Sum P(3) = 0.00084
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 140 EECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISG 199
E+ +I VPS + IIG+ G TIK +++K+R I++ P++ + + + V ISG
Sbjct: 320 EQMEIKVPSDKVGVIIGRGGETIKNMQTKSRARIQLIPQNEGDASK------ERTVRISG 373
Query: 200 ESEAVKKALFAISAIMYK 217
+ + A I +MY+
Sbjct: 374 DKRQIDIATALIKDVMYQ 391
Score = 67 (28.6 bits), Expect = 0.00084, Sum P(3) = 0.00084
Identities = 16/74 (21%), Positives = 36/74 (48%)
Query: 2 GDSGKRYRSQRDNDRDGKNQKRRIN---EKDEKGNEESVIYRILCPDGVIGSVIGKSGKV 58
G K +D G ++ + +N E + +S RI P +G++IGK G++
Sbjct: 195 GGESKEVNGSVSHDEIG-DESKEVNGGSTHKEVDDTQSTTRRIDVPSSKVGTLIGKGGEM 253
Query: 59 INSIRQETRARVKV 72
+ ++ + A++++
Sbjct: 254 VRYLQVNSGAKIQI 267
Score = 41 (19.5 bits), Expect = 0.00084, Sum P(3) = 0.00084
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 269 GAARVPDLQGYADTGNTWPVYSTGLSLVSGLVG 301
G +VP GY+ +T P Y + +G G
Sbjct: 677 GYGQVPPTGGYSSYPSTQPAYGNTPAQSNGNYG 709
>UNIPROTKB|F1MT25 [details] [associations]
symbol:HDLBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0003723 GeneTree:ENSGT00690000102206 OMA:YEKNTEA
EMBL:DAAA02009526 EMBL:DAAA02009521 EMBL:DAAA02009522
EMBL:DAAA02009523 EMBL:DAAA02009524 EMBL:DAAA02009525
IPI:IPI00688673 Ensembl:ENSBTAT00000005656 Uniprot:F1MT25
Length = 1257
Score = 86 (35.3 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 295 LVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECV 354
+V+ LV S S + + + F+K +IGKGG IK IR+ S +ID+ N + V
Sbjct: 573 MVADLVENSYS--ISVPIFKQFHK--NIIGKGGANIKKIREESNTKIDLPAENSNSETIV 628
Query: 355 IT 356
IT
Sbjct: 629 IT 630
Score = 77 (32.2 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 21/87 (24%), Positives = 43/87 (49%)
Query: 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFD 192
++K+K+ + V SQ +IG G +++ + +T S+++ P D++ T
Sbjct: 289 EEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSASET-------- 340
Query: 193 NFVLISGESEAVKKALFAISAIMYKFS 219
V++ GE E + +AL + A F+
Sbjct: 341 --VILRGEPEKLGQALTEVYAKANSFT 365
Score = 47 (21.6 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 567 KVIGKAGSNLANIRKISGATIEMSDSK--SSRGDRVALISGTPEQKRAAENLI 617
K+IG+ G+ + IR I+ D S D++ I+G + AA + I
Sbjct: 1055 KIIGRKGAVITQIRLEHDVNIQFPDKDDGSQPQDQIT-ITGYEKNTEAARDAI 1106
Score = 44 (20.5 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDP 75
VIGK+G+ + + +T ++++ P
Sbjct: 165 VIGKNGEKLQDLELKTATKIQIPRP 189
Score = 44 (20.5 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 51 VIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVT 85
+ G ++++ I QET R+ + P + V T
Sbjct: 237 IAGPYNRLVSEIMQETGTRINIPPPSVSRTEIVFT 271
Score = 37 (18.1 bits), Expect = 0.00092, Sum P(5) = 0.00092
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 419 KADVRISKGDKPKCADANDEL 439
+ D+ + G K KC A + L
Sbjct: 936 RCDIIVISGRKEKCEAAKEAL 956
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 624 474 0.0010 118 3 11 23 0.45 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 248
No. of states in DFA: 607 (65 KB)
Total size of DFA: 228 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.85u 0.09s 34.94t Elapsed: 00:00:02
Total cpu time: 34.91u 0.09s 35.00t Elapsed: 00:00:02
Start: Sat May 11 04:22:34 2013 End: Sat May 11 04:22:36 2013
WARNINGS ISSUED: 1