Query 006943
Match_columns 624
No_of_seqs 293 out of 2499
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 13:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3krm_A Insulin-like growth fac 99.9 7.6E-25 2.6E-29 203.6 14.2 153 388-623 2-156 (163)
2 2anr_A Neuro-oncological ventr 99.9 6.5E-25 2.2E-29 207.0 11.5 159 33-219 2-177 (178)
3 2jzx_A Poly(RC)-binding protei 99.9 9.3E-25 3.2E-29 202.3 11.8 157 386-623 2-159 (160)
4 2jvz_A KH type-splicing, FAR u 99.9 2.3E-24 8E-29 200.6 14.3 159 389-623 2-160 (164)
5 3krm_A Insulin-like growth fac 99.9 2.5E-24 8.6E-29 200.1 13.2 156 37-220 3-159 (163)
6 2jzx_A Poly(RC)-binding protei 99.9 4.5E-24 1.5E-28 197.7 11.5 156 35-217 3-159 (160)
7 1j4w_A FUSE binding protein; s 99.9 6.8E-24 2.3E-28 199.2 11.6 170 388-621 2-174 (174)
8 2anr_A Neuro-oncological ventr 99.9 5.3E-24 1.8E-28 200.8 10.8 171 386-623 3-175 (178)
9 3n89_A Defective in GERM LINE 99.9 6.2E-24 2.1E-28 217.0 11.6 227 136-460 26-259 (376)
10 1j4w_A FUSE binding protein; s 99.9 2.3E-23 8E-28 195.5 11.7 160 36-215 2-174 (174)
11 3n89_A Defective in GERM LINE 99.9 4.1E-23 1.4E-27 210.9 13.6 220 304-621 26-259 (376)
12 2jvz_A KH type-splicing, FAR u 99.9 1.1E-22 3.8E-27 189.2 13.0 152 37-218 2-161 (164)
13 2qnd_A FMR1 protein; KH domain 99.8 1.4E-18 4.8E-23 156.5 9.3 134 388-623 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 3.2E-17 1.1E-21 147.6 9.7 137 36-217 3-142 (144)
15 1zzk_A Heterogeneous nuclear r 99.6 1.3E-15 4.3E-20 123.4 9.4 72 552-623 5-76 (82)
16 2e3u_A PH-DIM2P, hypothetical 99.6 1.5E-15 5.1E-20 145.3 10.5 142 388-622 33-190 (219)
17 2p2r_A Poly(RC)-binding protei 99.6 8.3E-16 2.8E-20 122.7 7.2 72 553-624 4-75 (76)
18 1wvn_A Poly(RC)-binding protei 99.6 1.5E-15 5.1E-20 123.0 7.5 72 552-623 4-75 (82)
19 1x4n_A FAR upstream element bi 99.6 8E-15 2.7E-19 121.3 8.8 71 553-623 14-84 (92)
20 1dtj_A RNA-binding neurooncolo 99.5 6.7E-15 2.3E-19 117.5 7.1 70 554-623 3-75 (76)
21 1j5k_A Heterogeneous nuclear r 99.5 6.1E-15 2.1E-19 121.3 6.4 72 552-623 12-83 (89)
22 2axy_A Poly(RC)-binding protei 99.5 9E-15 3.1E-19 115.4 7.0 69 553-623 4-72 (73)
23 2e3u_A PH-DIM2P, hypothetical 99.5 1.6E-14 5.3E-19 138.3 10.0 144 37-217 34-191 (219)
24 2hh2_A KH-type splicing regula 99.5 2.2E-14 7.5E-19 122.1 7.7 70 554-623 7-79 (107)
25 1ec6_A RNA-binding protein NOV 99.5 2.1E-14 7E-19 117.7 7.1 70 554-623 3-75 (87)
26 2hh3_A KH-type splicing regula 99.5 2.5E-14 8.4E-19 121.0 7.6 69 555-623 12-80 (106)
27 1x4m_A FAR upstream element bi 99.5 3.4E-14 1.2E-18 118.0 7.8 73 551-623 12-86 (94)
28 2dgr_A Ring finger and KH doma 99.5 1.7E-14 5.7E-19 116.2 5.6 68 552-622 8-75 (83)
29 1tua_A Hypothetical protein AP 99.5 5.3E-14 1.8E-18 131.0 8.6 140 391-623 6-160 (191)
30 2opv_A KHSRP protein; KH domai 99.5 9.8E-14 3.4E-18 113.0 9.0 70 553-622 13-84 (85)
31 2ctm_A Vigilin; K homology typ 99.4 4.9E-13 1.7E-17 110.8 9.6 75 547-622 10-84 (95)
32 2axy_A Poly(RC)-binding protei 99.4 1E-13 3.6E-18 109.3 5.0 70 138-217 3-72 (73)
33 1vig_A Vigilin; RNA-binding pr 99.4 1.8E-13 6.3E-18 107.1 6.1 67 553-621 4-70 (71)
34 1we8_A Tudor and KH domain con 99.4 2.8E-13 9.6E-18 114.7 7.5 69 554-622 15-85 (104)
35 2ctl_A Vigilin; K homology typ 99.4 8.6E-13 3E-17 109.9 8.7 70 553-622 16-86 (97)
36 1tua_A Hypothetical protein AP 99.4 1.1E-12 3.9E-17 122.0 10.1 142 38-216 5-159 (191)
37 2cte_A Vigilin; K homology typ 99.4 6.6E-13 2.3E-17 110.1 7.4 73 548-622 11-83 (94)
38 2p2r_A Poly(RC)-binding protei 99.4 3.8E-13 1.3E-17 107.2 4.8 72 138-217 3-74 (76)
39 1zzk_A Heterogeneous nuclear r 99.4 8.6E-13 2.9E-17 106.6 6.5 73 138-218 5-77 (82)
40 1dtj_A RNA-binding neurooncolo 99.4 6.1E-13 2.1E-17 106.1 5.5 73 139-216 2-74 (76)
41 1wvn_A Poly(RC)-binding protei 99.4 5.9E-13 2E-17 107.7 5.5 74 137-218 3-76 (82)
42 1j5k_A Heterogeneous nuclear r 99.3 1.1E-12 3.6E-17 107.8 5.0 75 137-219 11-85 (89)
43 1ec6_A RNA-binding protein NOV 99.3 1.3E-12 4.6E-17 106.9 5.2 74 140-218 3-76 (87)
44 2dgr_A Ring finger and KH doma 99.3 8.6E-13 2.9E-17 106.2 2.8 70 136-216 6-75 (83)
45 1x4n_A FAR upstream element bi 99.3 3.5E-12 1.2E-16 105.4 6.4 74 137-218 12-85 (92)
46 2opv_A KHSRP protein; KH domai 99.3 5.2E-12 1.8E-16 102.8 7.1 73 138-216 12-84 (85)
47 2ctk_A Vigilin; K homology typ 99.3 4.7E-12 1.6E-16 106.8 6.8 67 554-622 17-83 (104)
48 1x4m_A FAR upstream element bi 99.3 2.6E-12 9E-17 106.6 4.5 76 136-217 11-86 (94)
49 2hh2_A KH-type splicing regula 99.3 4.4E-12 1.5E-16 107.8 5.7 72 141-217 8-79 (107)
50 2ctj_A Vigilin; K homology typ 99.2 1.5E-11 5E-16 101.7 8.4 73 548-622 11-84 (95)
51 2hh3_A KH-type splicing regula 99.2 6.1E-12 2.1E-16 106.3 5.7 72 140-219 11-82 (106)
52 2ctm_A Vigilin; K homology typ 99.2 8.1E-12 2.8E-16 103.5 5.3 77 135-220 12-88 (95)
53 1vig_A Vigilin; RNA-binding pr 99.2 6E-12 2E-16 98.5 3.8 68 138-215 3-70 (71)
54 2cte_A Vigilin; K homology typ 99.2 9.5E-12 3.3E-16 103.1 4.6 74 136-219 13-86 (94)
55 1we8_A Tudor and KH domain con 99.2 1.9E-11 6.4E-16 103.5 6.1 77 386-464 12-88 (104)
56 2ctl_A Vigilin; K homology typ 99.2 3.1E-11 1.1E-15 100.4 6.2 73 387-462 15-87 (97)
57 2ctf_A Vigilin; K homology typ 99.1 7.6E-11 2.6E-15 98.8 7.7 64 554-622 27-91 (102)
58 2ctj_A Vigilin; K homology typ 99.0 1.2E-10 4E-15 96.2 4.9 76 134-219 11-87 (95)
59 2ctk_A Vigilin; K homology typ 99.0 1.2E-10 4.2E-15 98.1 4.6 71 139-219 16-86 (104)
60 2ctf_A Vigilin; K homology typ 99.0 8.5E-10 2.9E-14 92.4 7.1 68 387-463 25-93 (102)
61 2cpq_A FragIle X mental retard 98.9 4.6E-10 1.6E-14 90.7 4.4 62 553-619 14-77 (91)
62 1k1g_A SF1-BO isoform; splicin 98.7 3.8E-08 1.3E-12 86.0 7.9 71 552-622 5-98 (131)
63 2cpq_A FragIle X mental retard 98.6 1.5E-08 5.2E-13 81.8 4.0 69 133-214 8-78 (91)
64 2yqr_A KIAA0907 protein; struc 98.6 1.2E-07 4.1E-12 81.1 9.0 70 554-623 12-99 (119)
65 1k1g_A SF1-BO isoform; splicin 98.4 6E-07 2.1E-11 78.4 6.9 80 138-217 5-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.3 6.1E-07 2.1E-11 76.7 5.4 80 139-218 11-100 (119)
67 2bl5_A MGC83862 protein, quaki 98.1 2.2E-06 7.4E-11 75.2 4.5 68 555-622 3-100 (140)
68 3u1k_A Polyribonucleotide nucl 98.0 6.7E-06 2.3E-10 90.5 7.3 61 555-621 568-629 (630)
69 3v69_A Protein filia; RNA-bind 98.0 1.9E-05 6.5E-10 67.5 8.1 67 555-622 57-123 (140)
70 2bl5_A MGC83862 protein, quaki 98.0 1.8E-05 6E-10 69.4 8.2 74 308-381 2-99 (140)
71 3u1k_A Polyribonucleotide nucl 97.7 1.9E-05 6.5E-10 87.0 5.3 93 108-215 536-629 (630)
72 4aid_A Polyribonucleotide nucl 97.4 9E-05 3.1E-09 82.5 4.5 62 555-622 571-633 (726)
73 2cxc_A NUSA; transcription ter 97.4 7.3E-05 2.5E-09 65.9 2.8 102 37-177 36-140 (144)
74 3v69_A Protein filia; RNA-bind 97.2 0.00031 1E-08 60.1 5.2 69 140-217 56-124 (140)
75 4aid_A Polyribonucleotide nucl 97.2 0.00019 6.5E-09 79.9 4.1 96 108-218 539-635 (726)
76 2cxc_A NUSA; transcription ter 97.1 4.6E-05 1.6E-09 67.2 -0.9 101 309-425 37-139 (144)
77 1k0r_A NUSA; two component arr 95.3 0.019 6.6E-07 58.3 5.8 95 46-179 249-346 (366)
78 2asb_A Transcription elongatio 95.2 0.016 5.6E-07 55.5 4.8 94 46-178 126-222 (251)
79 3cdi_A Polynucleotide phosphor 95.1 0.0074 2.5E-07 67.5 2.5 61 555-621 561-622 (723)
80 1e3p_A Guanosine pentaphosphat 94.6 0.0039 1.3E-07 70.1 -1.5 61 555-621 599-660 (757)
81 3cdi_A Polynucleotide phosphor 94.5 0.012 4.2E-07 65.7 2.2 94 108-216 529-623 (723)
82 1e3p_A Guanosine pentaphosphat 94.5 0.0059 2E-07 68.6 -0.4 92 108-215 568-660 (757)
83 1k0r_A NUSA; two component arr 94.1 0.013 4.4E-07 59.6 1.3 93 317-427 249-345 (366)
84 2asb_A Transcription elongatio 93.7 0.031 1E-06 53.6 2.8 94 317-428 126-223 (251)
85 1hh2_P NUSA, N utilization sub 92.9 0.083 2.9E-06 53.4 4.8 94 46-178 245-341 (344)
86 1hh2_P NUSA, N utilization sub 89.7 0.12 4E-06 52.4 2.0 93 317-426 245-340 (344)
87 1wh9_A 40S ribosomal protein S 75.8 1.1 3.8E-05 35.9 1.8 29 38-66 36-64 (92)
88 2pt7_G HP1451, hypothetical pr 59.3 3.6 0.00012 36.3 1.7 31 309-339 34-64 (152)
89 2pt7_G HP1451, hypothetical pr 53.2 6.8 0.00023 34.5 2.5 30 38-67 34-63 (152)
90 1wh9_A 40S ribosomal protein S 47.0 7.3 0.00025 31.1 1.5 28 555-582 36-63 (92)
91 2ba0_A Archeal exosome RNA bin 44.7 42 0.0014 31.6 6.7 57 556-618 138-194 (229)
92 3j20_C 30S ribosomal protein S 42.8 8.5 0.00029 35.8 1.5 28 39-66 42-69 (210)
93 3u5c_D RP13, YS3, 40S ribosoma 41.7 8.5 0.00029 36.4 1.3 28 39-66 46-73 (240)
94 2xzm_C KH domain containing pr 40.7 11 0.00039 35.7 2.0 29 38-66 48-76 (243)
95 3iz6_B 40S ribosomal protein S 38.9 8.8 0.0003 36.1 0.9 30 38-67 45-74 (227)
96 3eik_A Tata-box-binding protei 36.7 1.7E+02 0.006 27.1 9.3 103 355-463 99-215 (218)
97 3r8n_C 30S ribosomal protein S 34.7 9.4 0.00032 35.4 0.4 28 39-66 63-90 (206)
98 2zkq_c 40S ribosomal protein S 34.3 10 0.00036 35.9 0.6 30 38-67 45-74 (243)
99 3gku_A Probable RNA-binding pr 33.5 27 0.00091 32.8 3.3 58 116-173 67-125 (225)
100 3i1m_C 30S ribosomal protein S 31.7 11 0.00038 35.5 0.4 28 39-66 64-91 (233)
101 2z0s_A Probable exosome comple 31.7 1.2E+02 0.004 28.6 7.6 58 556-619 150-208 (235)
102 2vqe_C 30S ribosomal protein S 28.5 16 0.00056 34.6 0.9 27 40-66 65-91 (239)
103 1ytb_A Protein (tata binding p 27.8 3.3E+02 0.011 24.3 9.6 104 355-463 61-177 (180)
104 3iev_A GTP-binding protein ERA 25.4 29 0.00099 34.2 2.2 37 554-590 240-285 (308)
105 3bbn_C Ribosomal protein S3; s 24.5 15 0.00051 34.4 -0.2 28 39-66 72-99 (218)
106 3gku_A Probable RNA-binding pr 21.1 33 0.0011 32.2 1.5 32 39-70 94-125 (225)
107 3u5c_D RP13, YS3, 40S ribosoma 20.5 37 0.0013 32.1 1.6 28 555-582 45-72 (240)
No 1
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.92 E-value=7.6e-25 Score=203.58 Aligned_cols=153 Identities=22% Similarity=0.413 Sum_probs=128.9
Q ss_pred cEEEEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCCCCCCCCCCCcEEEEEeehHHHHHHHHHHHHHHhhccccC
Q 006943 388 TVTIRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKCADANDELVEVVGEVGSVRDALVQIILRLRDDALKD 467 (624)
Q Consensus 388 ~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~e~~~~~ 467 (624)
+.+++|+||.+++|.|||++|++|++|+++|||+|+|+++..| +..+|+|+|+|+++++.+|+.+|.+.+.+.....
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~---~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~ 78 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETP---DSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFG 78 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSST---TCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHhcccccc
Confidence 3578999999999999999999999999999999999876544 4678999999999999999999998887641100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 006943 468 RDGSRNPPVGADHIYSSGTGISMPPLLPSIPPVGPLGYDQRADSGSGIGMLSSSSLYGYGSLSMGDSPYGSMSSYSSKLY 547 (624)
Q Consensus 468 ~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (624)
|.
T Consensus 79 ------~~------------------------------------------------------------------------ 80 (163)
T 3krm_A 79 ------PK------------------------------------------------------------------------ 80 (163)
T ss_dssp ------SS------------------------------------------------------------------------
T ss_pred ------cc------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCC-CCCC-CeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 548 GGLPPPLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSK-SSRG-DRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 548 ~~~~~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~-~~~~-~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
.....+.++.||.+++|+||||+|++|++|++.|||+|+|+++. +..+ ++.|+|+|++++|+.|+.+|+++|..
T Consensus 81 --~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 81 --EEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQ 156 (163)
T ss_dssp --CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred --cCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 00123779999999999999999999999999999999998764 2233 34899999999999999999999864
No 2
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.91 E-value=6.5e-25 Score=207.02 Aligned_cols=159 Identities=28% Similarity=0.424 Sum_probs=125.0
Q ss_pred CCceEEEEEEecCcccceeccCCchHHHHHHHhcCCeEEeeCC---CCCCCceEEEEEccCCcccccccccccCCCCccc
Q 006943 33 NEESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDP---FPGAKDRVVTIYSHVKDKEDVEVDDEFNDKEPLC 109 (624)
Q Consensus 33 ~~~~~~~~ilvp~~~~g~vIGk~G~~I~~i~~etg~~I~v~~~---~~~~~er~i~I~G~~~~~~~~~~~~~~~~~~~~~ 109 (624)
.++.++++|+||.+++|.||||+|++|++|+++|||+|.|++. .+++.+|+|+|+|..+++
T Consensus 2 l~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v---------------- 65 (178)
T 2anr_A 2 LGSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEAL---------------- 65 (178)
T ss_dssp -CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHH----------------
T ss_pred CCCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHH----------------
Confidence 4667999999999999999999999999999999999999763 467899999999986653
Q ss_pred HHHHHHHHHHHHHHHhhhccCCC--------------cccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEE
Q 006943 110 AAQDALLKVHAAIANAVANATDN--------------DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKV 175 (624)
Q Consensus 110 ~a~~ai~~v~~~i~~~~~~~~~~--------------~~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i 175 (624)
.++.+.|.+.+....+. ........+++|+||.+++|+||||+|++|++|+++|||+|+|
T Consensus 66 ------~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i 139 (178)
T 2anr_A 66 ------NAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL 139 (178)
T ss_dssp ------HHHHHHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEE
T ss_pred ------HHHHHHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEE
Confidence 22223333322221110 0012235789999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHhhcC
Q 006943 176 TPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMYKFS 219 (624)
Q Consensus 176 ~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~~~~ 219 (624)
.+.. .++.++++.|+|+|++++|.+|+.+|.++|++.+
T Consensus 140 ~~~~------~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 140 SQKP------DGINLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp CCCC----------CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred eCCC------CCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 8643 2344678999999999999999999999997643
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.91 E-value=9.3e-25 Score=202.32 Aligned_cols=157 Identities=29% Similarity=0.542 Sum_probs=131.2
Q ss_pred CCcEEEEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCCCCCCCCCCCcEEEEEeehHHHHHHHHHHHHHHhhccc
Q 006943 386 DDTVTIRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKCADANDELVEVVGEVGSVRDALVQIILRLRDDAL 465 (624)
Q Consensus 386 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~e~~~ 465 (624)
+.+++++|.||..++|.|||++|++|++|+++|||+|+|++.. ..++.|+|+|+.++|.+|+.+|.+.+.+...
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~------~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~ 75 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN------CPERIITLAGPTNAIFKAFAMIIDKLEEDIS 75 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCT------TTEEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCC------CCceEEEEEeCHHHHHHHHHHHHHHHHhhcc
Confidence 4578899999999999999999999999999999999998642 4578999999999999999999988877532
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 006943 466 KDRDGSRNPPVGADHIYSSGTGISMPPLLPSIPPVGPLGYDQRADSGSGIGMLSSSSLYGYGSLSMGDSPYGSMSSYSSK 545 (624)
Q Consensus 466 ~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (624)
..... + .
T Consensus 76 ~~~~~---------------------------------~-------------------------------~--------- 82 (160)
T 2jzx_A 76 SSMTN---------------------------------S-------------------------------T--------- 82 (160)
T ss_dssp SCCCS---------------------------------S-------------------------------S---------
T ss_pred ccCCC---------------------------------C-------------------------------c---------
Confidence 11000 0 0
Q ss_pred cCCCCCCCcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCC-CCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 546 LYGGLPPPLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSK-SSRGDRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 546 ~~~~~~~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~-~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
.......+.++.||.+++|+||||+|++|++|++.|||+|+|++.. +...++.|+|+|++++++.|+.+|.+++..
T Consensus 83 --~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 83 --AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp --CCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred --cCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 0000124899999999999999999999999999999999998642 446789999999999999999999999875
No 4
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=200.63 Aligned_cols=159 Identities=21% Similarity=0.400 Sum_probs=128.5
Q ss_pred EEEEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCCCCCCCCCCCcEEEEEeehHHHHHHHHHHHHHHhhccccCC
Q 006943 389 VTIRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKCADANDELVEVVGEVGSVRDALVQIILRLRDDALKDR 468 (624)
Q Consensus 389 ~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~e~~~~~~ 468 (624)
++.+|.||.+++|.|||++|++||+|+++|||+|++.++.. .....+++|+|+|++++|.+|+.+|.+.+.+....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~--~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~-- 77 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS--QNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQG-- 77 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTT--SSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSC--
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCC--
Confidence 57899999999999999999999999999999999986431 12356889999999999999999998877653110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 006943 469 DGSRNPPVGADHIYSSGTGISMPPLLPSIPPVGPLGYDQRADSGSGIGMLSSSSLYGYGSLSMGDSPYGSMSSYSSKLYG 548 (624)
Q Consensus 469 ~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (624)
.+.+. ..|+.
T Consensus 78 --~~~~~----------------------------------------------------------~~~~~---------- 87 (164)
T 2jvz_A 78 --GFGDR----------------------------------------------------------NEYGS---------- 87 (164)
T ss_dssp --CCSSC----------------------------------------------------------SSCTT----------
T ss_pred --CCCCc----------------------------------------------------------cccCC----------
Confidence 00000 00000
Q ss_pred CCCCCcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 549 GLPPPLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 549 ~~~~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
....+.++.||.+++|+||||+|.+|++|++.|||+|+|++..+...++.|+|+|++++++.|+.+|+++|..
T Consensus 88 --~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 88 --RIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp --SCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred --CCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHHhh
Confidence 0012567899999999999999999999999999999999876666689999999999999999999998863
No 5
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=200.07 Aligned_cols=156 Identities=24% Similarity=0.339 Sum_probs=125.4
Q ss_pred EEEEEEecCcccceeccCCchHHHHHHHhcCCeEEeeCC-CCCCCceEEEEEccCCcccccccccccCCCCcccHHHHHH
Q 006943 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDP-FPGAKDRVVTIYSHVKDKEDVEVDDEFNDKEPLCAAQDAL 115 (624)
Q Consensus 37 ~~~~ilvp~~~~g~vIGk~G~~I~~i~~etg~~I~v~~~-~~~~~er~i~I~G~~~~~~~~~~~~~~~~~~~~~~a~~ai 115 (624)
-+++|+||.+++|.||||+|++|++|+++|||+|.|++. .+++.+|+|+|+|+++++ .+|.
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v------------------~~A~ 64 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQ------------------FKAQ 64 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHH------------------HHHH
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHH------------------HHHH
Confidence 589999999999999999999999999999999999874 678899999999987652 3455
Q ss_pred HHHHHHHHHhhhccCCCcccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceE
Q 006943 116 LKVHAAIANAVANATDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFV 195 (624)
Q Consensus 116 ~~v~~~i~~~~~~~~~~~~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V 195 (624)
..+++.+.+.. ..........+++|+||.+++|+||||+|++|++|+++|||+|.|.....+. ..+++.|
T Consensus 65 ~~I~~~~~e~~----~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~------~~~~~~v 134 (163)
T 3krm_A 65 GRIYGKLKEEN----FFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPD------ENDQVIV 134 (163)
T ss_dssp HHHHHHHHHTT----SSCSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCC------TTSEEEE
T ss_pred HHHHHHHhccc----ccccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCC------CCCceEE
Confidence 55555443321 1111223457889999999999999999999999999999999997643211 1334589
Q ss_pred EEecCHHHHHHHHHHHHHHHhhcCC
Q 006943 196 LISGESEAVKKALFAISAIMYKFSP 220 (624)
Q Consensus 196 ~I~G~~~~V~~A~~~I~~~l~~~~~ 220 (624)
+|+|++++|.+|+.+|.+++++...
T Consensus 135 ~I~G~~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 135 KIIGHFYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEeCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987554
No 6
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.90 E-value=4.5e-24 Score=197.74 Aligned_cols=156 Identities=21% Similarity=0.417 Sum_probs=126.2
Q ss_pred ceEEEEEEecCcccceeccCCchHHHHHHHhcCCeEEeeCCCCCCCceEEEEEccCCcccccccccccCCCCcccHHHHH
Q 006943 35 ESVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHVKDKEDVEVDDEFNDKEPLCAAQDA 114 (624)
Q Consensus 35 ~~~~~~ilvp~~~~g~vIGk~G~~I~~i~~etg~~I~v~~~~~~~~er~i~I~G~~~~~~~~~~~~~~~~~~~~~~a~~a 114 (624)
..++++|+||.+.+|.||||+|++|++|+++|||+|.|++. ++.+|+|+|+|+.+++ .+|
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~v------------------~~A 62 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAI------------------FKA 62 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHHH------------------HHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHHH------------------HHH
Confidence 46899999999999999999999999999999999999885 6789999999996653 234
Q ss_pred HHHHHHHHHHhhhcc-CCCcccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCc
Q 006943 115 LLKVHAAIANAVANA-TDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDN 193 (624)
Q Consensus 115 i~~v~~~i~~~~~~~-~~~~~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r 193 (624)
...+.+.+.+.+... ..+.......++++|+||.+++|+||||+|++|++|+++|||+|+|.+.. ++.++++
T Consensus 63 ~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~-------~~~~~~~ 135 (160)
T 2jzx_A 63 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-------LPNSTER 135 (160)
T ss_dssp HHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCC-------STTCCEE
T ss_pred HHHHHHHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCC-------CCCCCce
Confidence 454554444433221 11111123358999999999999999999999999999999999997532 2346789
Q ss_pred eEEEecCHHHHHHHHHHHHHHHhh
Q 006943 194 FVLISGESEAVKKALFAISAIMYK 217 (624)
Q Consensus 194 ~V~I~G~~~~V~~A~~~I~~~l~~ 217 (624)
.|+|+|++++|.+|+.+|.+++.+
T Consensus 136 ~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 136 AITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998865
No 7
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.90 E-value=6.8e-24 Score=199.22 Aligned_cols=170 Identities=25% Similarity=0.406 Sum_probs=126.3
Q ss_pred cEEEEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCCCCCCCCCCCcEEEEEeehHHHHHHHHHHHHHHhhccccC
Q 006943 388 TVTIRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKCADANDELVEVVGEVGSVRDALVQIILRLRDDALKD 467 (624)
Q Consensus 388 ~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~e~~~~~ 467 (624)
..+++|.||.+++|.||||+|++|++|+++|||+|+|.+.. + ...+++|+|+|++++|.+|+.+|.+.+.+.....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~-~---~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~ 77 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-G---TTPERIAQITGPPDRAQHAAEIITDLLRSVQAGN 77 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT-T---SCSEEEEEEEECHHHHHHHHHHHHHHHHHHC---
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCC
Confidence 46789999999999999999999999999999999998632 2 3568999999999999999999988887642100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 006943 468 RDGSRNPPVGADHIYSSGTGISMPPLLPSIPPVGPLGYDQRADSGSGIGMLSSSSLYGYGSLSMGDSPYGSMSSYSSKLY 547 (624)
Q Consensus 468 ~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (624)
+.++ .|. + .+++.. ...|..
T Consensus 78 ----~~~~--------------~p~-----------~--------~~~~~~-------~~~~~~---------------- 97 (174)
T 1j4w_A 78 ----PGGP--------------GPG-----------G--------RGRGRG-------QGNWNM---------------- 97 (174)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----CCCC--------------CCC-----------C--------CCCCCC-------CCcccc----------------
Confidence 0000 000 0 000000 000000
Q ss_pred CCCCCCcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCC---CCCCeEEEEEcCHHHHHHHHHHHHHHH
Q 006943 548 GGLPPPLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLIQAFI 621 (624)
Q Consensus 548 ~~~~~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~---~~~~r~v~I~Gt~e~v~~A~~lI~~~i 621 (624)
+......+.++.||.+++|+||||+|++|++|++.|||+|+|++..+ +..++.|+|+|++++++.|+.||+++|
T Consensus 98 ~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 98 GPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp ------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 00011348899999999999999999999999999999999997632 356799999999999999999999875
No 8
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.90 E-value=5.3e-24 Score=200.80 Aligned_cols=171 Identities=26% Similarity=0.403 Sum_probs=130.7
Q ss_pred CCcEEEEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCCCCCCCCCCCcEEEEEeehHHHHHHHHHHHHHHhhccc
Q 006943 386 DDTVTIRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKCADANDELVEVVGEVGSVRDALVQIILRLRDDAL 465 (624)
Q Consensus 386 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~e~~~ 465 (624)
...++++|.||.+++|.||||+|++|++|+++|||+|+|++.... .....+|+|+|+|++++|.+|+.+|.+.+.+...
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~-~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF-YPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQ 81 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCB-CTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCC-CCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCC
Confidence 456899999999999999999999999999999999999864321 1135689999999999999999999888765421
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 006943 466 KDRDGSRNPPVGADHIYSSGTGISMPPLLPSIPPVGPLGYDQRADSGSGIGMLSSSSLYGYGSLSMGDSPYGSMSSYSSK 545 (624)
Q Consensus 466 ~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (624)
..... + . .. ..+ + . .
T Consensus 82 ~~~~~--------~-~------~~---~~~------~------------------------~--------~--------- 96 (178)
T 2anr_A 82 NVAKT--------E-P------VS---ILQ------P------------------------Q--------T--------- 96 (178)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred ccccC--------C-c------cc---ccC------C------------------------c--------c---------
Confidence 10000 0 0 00 000 0 0 0
Q ss_pred cCCCCCCCcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCC--CCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 546 LYGGLPPPLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKS--SRGDRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 546 ~~~~~~~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~--~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
........+.+|.||.+++|+||||+|++|++|++.|||+|+|++... ...++.|+|+|++++|+.|+.+|.++|..
T Consensus 97 -~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 97 -TVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQE 175 (178)
T ss_dssp ----CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred -CCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 000011358899999999999999999999999999999999997642 34679999999999999999999999864
No 9
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.90 E-value=6.2e-24 Score=216.96 Aligned_cols=227 Identities=14% Similarity=0.167 Sum_probs=159.5
Q ss_pred CCCceeEEEEEeccceeEEEeCCc--hHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHH
Q 006943 136 RKEKEECQILVPSSQSANIIGKAG--ATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISA 213 (624)
Q Consensus 136 ~~~~~~~~llvp~~~~g~iIGk~G--~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~ 213 (624)
..+.+|+.+.||..+|++||||+| ++|++|+++|||+|+|+..+... ..+......|+|+|.+++|++|+.+|.+
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~---~~~~~ks~~VtItG~~enVE~AR~~I~~ 102 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGG---TTPDPFAQQVTITGYFGDVDRARMLMRR 102 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCS---SSCCTTTTEEEEEEEHHHHHHHHHHHHH
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccc---cCCcCCCCeEEEEcCHHHHHHHHHHHHh
Confidence 467899999999999999999999 99999999999999997644100 1122455789999999999999998877
Q ss_pred HHhhcCCCCCCCCCCccCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006943 214 IMYKFSPREDIPLETTVREAPPSIIIPSDVPIYPPGGLYPNADPILPSRSVPSILGAARVPDLQGYADTGNTWPVYSTGL 293 (624)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~ 293 (624)
++
T Consensus 103 l~------------------------------------------------------------------------------ 104 (376)
T 3n89_A 103 NC------------------------------------------------------------------------------ 104 (376)
T ss_dssp SC------------------------------------------------------------------------------
T ss_pred cC------------------------------------------------------------------------------
Confidence 43
Q ss_pred ccccCCCCCCCCccEEEEEEecCCccceeeccCcchHHHHHhHhCCeEEEcCCCC--CCCceEEEEeecC-CchhHHHHH
Q 006943 294 SLVSGLVGASQSEELVIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKD--NRDECVITVTAIE-SPDDIKSMA 370 (624)
Q Consensus 294 p~~~~~~~~~~~~~~~~~i~vp~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~--~~~er~i~I~G~~-~~~~a~~~~ 370 (624)
.+++.+.+|...++. ..-+..|.+ ++.++++|.|+.... +.....|+|+|++ ++++++.++
T Consensus 105 -------------Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~ 168 (376)
T 3n89_A 105 -------------HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAA 168 (376)
T ss_dssp -------------EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHH
T ss_pred -------------CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHH
Confidence 235556666543332 111234544 567899999964322 1125679999963 344444333
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEEecCCeeeEEEcCCC--chHHHHHHhcCceEEEeCCCCCCCCCCCCcEEEEEeehHH
Q 006943 371 VEAVLLLQTKINDEDDDTVTIRLLVSSKVIGCIIGKSG--SIINEIRKRTKADVRISKGDKPKCADANDELVEVVGEVGS 448 (624)
Q Consensus 371 ~~~i~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G--~~Ik~I~~~tga~I~i~~~~~p~~~~~~~~~v~I~G~~~~ 448 (624)
...+..+.+. .......+++.|.|+..+|..|||++| ..|++|+++|||+|.|++.+.+.........|+|+|..++
T Consensus 169 ~~Ll~~l~~~-e~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~ 247 (376)
T 3n89_A 169 KRLNEILFRE-SPAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDN 247 (376)
T ss_dssp HHHHHHHCC---CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHH
T ss_pred HHHHHHHHhh-hcccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHH
Confidence 3333333322 122345789999999999999999999 5679999999999999865443211133567999999999
Q ss_pred HHHHHHHHHHHH
Q 006943 449 VRDALVQIILRL 460 (624)
Q Consensus 449 v~~A~~~I~~~l 460 (624)
|.+|..+|.+.|
T Consensus 248 V~~Ark~I~~lL 259 (376)
T 3n89_A 248 VLKARRYIMDLL 259 (376)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhhC
Confidence 999999998877
No 10
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.89 E-value=2.3e-23 Score=195.54 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=120.5
Q ss_pred eEEEEEEecCcccceeccCCchHHHHHHHhcCCeEEeeCCCCCCCceEEEEEccCCcccccccccccCCCCcccHHHHHH
Q 006943 36 SVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHVKDKEDVEVDDEFNDKEPLCAAQDAL 115 (624)
Q Consensus 36 ~~~~~ilvp~~~~g~vIGk~G~~I~~i~~etg~~I~v~~~~~~~~er~i~I~G~~~~~~~~~~~~~~~~~~~~~~a~~ai 115 (624)
..+++|+||.+++|.||||+|++|++|+++|||+|.|.+..++..+|+|+|+|+.+++. .|.+.|
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~---------------~A~~~I 66 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQ---------------HAAEII 66 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHH---------------HHHHHH
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHH---------------HHHHHH
Confidence 46899999999999999999999999999999999998766678899999999977633 233333
Q ss_pred HHHHHHHHHhhhcc----------C--CCc-ccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCC
Q 006943 116 LKVHAAIANAVANA----------T--DND-KKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASE 182 (624)
Q Consensus 116 ~~v~~~i~~~~~~~----------~--~~~-~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~ 182 (624)
..++.......... . +.. ..+...++++|+||.+++|+||||+|++|++|+++|||+|+|....
T Consensus 67 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--- 143 (174)
T 1j4w_A 67 TDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--- 143 (174)
T ss_dssp HHHHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC---
T ss_pred HHHHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC---
Confidence 33332211000000 0 000 0112357889999999999999999999999999999999998642
Q ss_pred CCCcccccCCceEEEecCHHHHHHHHHHHHHHH
Q 006943 183 PTHSCAMEFDNFVLISGESEAVKKALFAISAIM 215 (624)
Q Consensus 183 ~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l 215 (624)
+.+..++++.|+|+|++++|.+|+.+|.++|
T Consensus 144 --~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 144 --PPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp --TTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred --CCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 1233467899999999999999999998764
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.89 E-value=4.1e-23 Score=210.94 Aligned_cols=220 Identities=9% Similarity=0.078 Sum_probs=151.6
Q ss_pred CCccEEEEEEecCCccceeeccCc--chHHHHHhHhCCeEEEcCCC--C---CCCceEEEEeec-CCchhHHHHHHHHHH
Q 006943 304 QSEELVIRVLCPFNKIGRVIGKGG--GTIKSIRQASGAQIDVDDTK--D---NRDECVITVTAI-ESPDDIKSMAVEAVL 375 (624)
Q Consensus 304 ~~~~~~~~i~vp~~~vg~IIGk~G--~~Ik~I~~~tga~I~v~~~~--~---~~~er~i~I~G~-~~~~~a~~~~~~~i~ 375 (624)
..+.+++.+.||..+|+.||||+| ++|++|+++|||+|+|++.. . ......|+|+|. ++++.|+. .|
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~----~I- 100 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARM----LM- 100 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHH----HH-
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHH----HH-
Confidence 457899999999999999999999 99999999999999998765 1 123457999996 44444433 22
Q ss_pred HHhhccCCCCCCcEEEEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCCCCCCCCCCCcEEEEEeehHHHHHHHHH
Q 006943 376 LLQTKINDEDDDTVTIRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKCADANDELVEVVGEVGSVRDALVQ 455 (624)
Q Consensus 376 ~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~ 455 (624)
... .++++.+.+|...+.. ...+..|.+ ++.++++|.|+..... .......|+|+|...+|.+|...
T Consensus 101 --~~l------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~--~~~~sd~V~IrG~~~nv~~akeA 167 (376)
T 3n89_A 101 --RRN------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEK--NGIVTTYLRITAREKNQHELIEA 167 (376)
T ss_dssp --HHS------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-------CEEEEEEEEEGGGHHHHHHH
T ss_pred --Hhc------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccc--cCCCCCEEEEEcChhhHHHHHHH
Confidence 221 2567778887643322 111234544 5689999999654211 01124568999999777665554
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006943 456 IILRLRDDALKDRDGSRNPPVGADHIYSSGTGISMPPLLPSIPPVGPLGYDQRADSGSGIGMLSSSSLYGYGSLSMGDSP 535 (624)
Q Consensus 456 I~~~l~e~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 535 (624)
+...|......+. .
T Consensus 168 ~~~Ll~~l~~~e~-~----------------------------------------------------------------- 181 (376)
T 3n89_A 168 AKRLNEILFRESP-A----------------------------------------------------------------- 181 (376)
T ss_dssp HHHHHHHHCC--C-C-----------------------------------------------------------------
T ss_pred HHHHHHHHHhhhc-c-----------------------------------------------------------------
Confidence 4433332111100 0
Q ss_pred CCCCCCcccccCCCCCCCcEEEEEeccccccceeccCC--chHHHHHHHhCCEEEEeCCCCC----CCCeEEEEEcCHHH
Q 006943 536 YGSMSSYSSKLYGGLPPPLTLEVLVPANAVGKVIGKAG--SNLANIRKISGATIEMSDSKSS----RGDRVALISGTPEQ 609 (624)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~i~VP~~~vg~IIGkgG--~~I~~I~~~sGa~I~i~~~~~~----~~~r~v~I~Gt~e~ 609 (624)
....++.+|.|+.+++..|||++| ..|++|+++|||+|.+++..+. .+...|+|+|++++
T Consensus 182 --------------~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~ 247 (376)
T 3n89_A 182 --------------PENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDN 247 (376)
T ss_dssp --------------CSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHH
T ss_pred --------------cccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHH
Confidence 011248999999999999999999 4569999999999999976431 23468999999999
Q ss_pred HHHHHHHHHHHH
Q 006943 610 KRAAENLIQAFI 621 (624)
Q Consensus 610 v~~A~~lI~~~i 621 (624)
|..|+.+|+++|
T Consensus 248 V~~Ark~I~~lL 259 (376)
T 3n89_A 248 VLKARRYIMDLL 259 (376)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhhC
Confidence 999999999875
No 12
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=189.23 Aligned_cols=152 Identities=18% Similarity=0.310 Sum_probs=119.6
Q ss_pred EEEEEEecCcccceeccCCchHHHHHHHhcCCeEEeeCC--CCCCCceEEEEEccCCcccccccccccCCCCcccHHHHH
Q 006943 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDP--FPGAKDRVVTIYSHVKDKEDVEVDDEFNDKEPLCAAQDA 114 (624)
Q Consensus 37 ~~~~ilvp~~~~g~vIGk~G~~I~~i~~etg~~I~v~~~--~~~~~er~i~I~G~~~~~~~~~~~~~~~~~~~~~~a~~a 114 (624)
++++|+||.+++|.||||+|++|++|+++|||+|.|.+. .++..+|+|+|+|+.+++. .|
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~------------------~A 63 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQ------------------QA 63 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHH------------------HH
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHH------------------HH
Confidence 688999999999999999999999999999999999753 3567899999999866532 23
Q ss_pred HHHHHHHHHHhhhccCCCc------ccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCccc
Q 006943 115 LLKVHAAIANAVANATDND------KKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCA 188 (624)
Q Consensus 115 i~~v~~~i~~~~~~~~~~~------~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~ 188 (624)
+..+.+ .+....... ......++++|+||.+++|+||||+|++|++|+++|||+|.|.+.+ +
T Consensus 64 ~~~I~~----ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--------~ 131 (164)
T 2jvz_A 64 CEMVMD----ILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--------G 131 (164)
T ss_dssp HHHHHH----HTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--------T
T ss_pred HHHHHH----HHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--------C
Confidence 333333 232211000 0111135688999999999999999999999999999999998643 1
Q ss_pred ccCCceEEEecCHHHHHHHHHHHHHHHhhc
Q 006943 189 MEFDNFVLISGESEAVKKALFAISAIMYKF 218 (624)
Q Consensus 189 ~~~~r~V~I~G~~~~V~~A~~~I~~~l~~~ 218 (624)
.+.++.|+|+|++++|.+|+.+|.+++++.
T Consensus 132 ~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 132 TGPEKIAHIMGPPDRCEHAARIINDLLQSL 161 (164)
T ss_dssp TSSEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 246899999999999999999999998753
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.76 E-value=1.4e-18 Score=156.51 Aligned_cols=134 Identities=21% Similarity=0.253 Sum_probs=105.6
Q ss_pred cEEEEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCCCCCCCCCCCcEEEEEeehHHHHHHHHHHHHHHhhccccC
Q 006943 388 TVTIRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKCADANDELVEVVGEVGSVRDALVQIILRLRDDALKD 467 (624)
Q Consensus 388 ~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~e~~~~~ 467 (624)
.++.+|.||...+|.+||++|++|+.|++++|+++....+ ..+.++...++++.|.+|..++ +.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~-------~~~~~i~~~~~p~~v~~~~~~l-----~~---- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE-------DTCTFHIYGEDQDAVKKARSFL-----EF---- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET-------TTTEEEEEESSHHHHHHHHHHH-----CE----
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC-------CchheeeccCCHHHHHHHHHhh-----hc----
Confidence 4678999999999999999999999999999944333221 2244554445789998885421 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 006943 468 RDGSRNPPVGADHIYSSGTGISMPPLLPSIPPVGPLGYDQRADSGSGIGMLSSSSLYGYGSLSMGDSPYGSMSSYSSKLY 547 (624)
Q Consensus 468 ~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (624)
T Consensus 67 -------------------------------------------------------------------------------- 66 (144)
T 2qnd_A 67 -------------------------------------------------------------------------------- 66 (144)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcEEEEEeccccccceeccCCchHHHHHHHhCC-EEEEeCCCCC---CCC--eEEEEEcCHHHHHHHHHHHHHHH
Q 006943 548 GGLPPPLTLEVLVPANAVGKVIGKAGSNLANIRKISGA-TIEMSDSKSS---RGD--RVALISGTPEQKRAAENLIQAFI 621 (624)
Q Consensus 548 ~~~~~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa-~I~i~~~~~~---~~~--r~v~I~Gt~e~v~~A~~lI~~~i 621 (624)
...+|.||.+.+|++|||+|+||+.|++.||| +|+|+...+. .++ +.|+|+|++++|+.|+.||++.|
T Consensus 67 ------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l 140 (144)
T 2qnd_A 67 ------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHL 140 (144)
T ss_dssp ------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHH
Confidence 03679999999999999999999999999997 9999975432 123 35899999999999999999998
Q ss_pred hh
Q 006943 622 MA 623 (624)
Q Consensus 622 ~~ 623 (624)
.+
T Consensus 141 ~~ 142 (144)
T 2qnd_A 141 NY 142 (144)
T ss_dssp HT
T ss_pred Hh
Confidence 75
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.70 E-value=3.2e-17 Score=147.62 Aligned_cols=137 Identities=15% Similarity=0.237 Sum_probs=101.7
Q ss_pred eEEEEEEecCcccceeccCCchHHHHHHHhcCCeEEeeCCCCCCCceEEEEEccCCcccccccccccCCCCcccHHHHHH
Q 006943 36 SVIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHVKDKEDVEVDDEFNDKEPLCAAQDAL 115 (624)
Q Consensus 36 ~~~~~ilvp~~~~g~vIGk~G~~I~~i~~etg~~I~v~~~~~~~~er~i~I~G~~~~~~~~~~~~~~~~~~~~~~a~~ai 115 (624)
.++.+|+||.+.+|++||++|++|++|++++| |.+.+. ...+++.+...+.++. +
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~-~~~~~~~i~~~~~p~~----------------------v 57 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDL-DEDTCTFHIYGEDQDA----------------------V 57 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEE-ETTTTEEEEEESSHHH----------------------H
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEecc-CCCchheeeccCCHHH----------------------H
Confidence 46789999999999999999999999999999 444321 1234555544434433 2
Q ss_pred HHHHHHHHHhhhccCCCcccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCC-eEEEccCCCCCCCCcccccCCc-
Q 006943 116 LKVHAAIANAVANATDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRT-SIKVTPKDASEPTHSCAMEFDN- 193 (624)
Q Consensus 116 ~~v~~~i~~~~~~~~~~~~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga-~I~i~~~~~~~~~~~~~~~~~r- 193 (624)
.++.. +. . ..+.++.||.+++|.+|||+|.+|+.|++.||| +|+|.+.+... . ..+++
T Consensus 58 ~~~~~-~l---~-----------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~----~-~~~~~~ 117 (144)
T 2qnd_A 58 KKARS-FL---E-----------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN----V-PQEEGM 117 (144)
T ss_dssp HHHHH-HH---C-----------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC----C-CCCTTE
T ss_pred HHHHH-hh---h-----------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC----c-cccCCe
Confidence 22211 11 1 123889999999999999999999999999997 99998754221 1 12344
Q ss_pred -eEEEecCHHHHHHHHHHHHHHHhh
Q 006943 194 -FVLISGESEAVKKALFAISAIMYK 217 (624)
Q Consensus 194 -~V~I~G~~~~V~~A~~~I~~~l~~ 217 (624)
.|+|+|++++|..|+.+|.++|..
T Consensus 118 ~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 118 VPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999864
No 15
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.62 E-value=1.3e-15 Score=123.41 Aligned_cols=72 Identities=33% Similarity=0.586 Sum_probs=67.0
Q ss_pred CCcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 552 PPLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 552 ~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
+.++.+|.||.+++|+||||+|++|++|+++|||+|+|++..++..++.|+|+|++++++.|+.||++++..
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 456999999999999999999999999999999999999876677889999999999999999999999863
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.61 E-value=1.5e-15 Score=145.34 Aligned_cols=142 Identities=21% Similarity=0.254 Sum_probs=108.3
Q ss_pred cEEEEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCCCCCCCCCCCcEEEEEee-----hHHHHHHHHHHHHHHhh
Q 006943 388 TVTIRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKCADANDELVEVVGE-----VGSVRDALVQIILRLRD 462 (624)
Q Consensus 388 ~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~p~~~~~~~~~v~I~G~-----~~~v~~A~~~I~~~l~e 462 (624)
+...++.||...++.|||++|.+|+.|+++|||+|.+.. .++.|+|.|+ ++++.+|..+|.+..+.
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~---------~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg 103 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS---------ETGEVWITSTKETEDPLAVWKARDIVLAIGRG 103 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT---------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc---------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcc
Confidence 446789999999999999999999999999999999963 2567889986 69999999888776532
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 006943 463 DALKDRDGSRNPPVGADHIYSSGTGISMPPLLPSIPPVGPLGYDQRADSGSGIGMLSSSSLYGYGSLSMGDSPYGSMSSY 542 (624)
Q Consensus 463 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (624)
.....-. .++.
T Consensus 104 ~~~e~g~----------~ll~----------------------------------------------------------- 114 (219)
T 2e3u_A 104 FSPERAF----------RLLN----------------------------------------------------------- 114 (219)
T ss_dssp CCHHHHG----------GGGS-----------------------------------------------------------
T ss_pred CCccccc----------eecc-----------------------------------------------------------
Confidence 1000000 0000
Q ss_pred ccccCCCCCCCcEEEEEec-----------cccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHH
Q 006943 543 SSKLYGGLPPPLTLEVLVP-----------ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKR 611 (624)
Q Consensus 543 ~~~~~~~~~~~~~~~i~VP-----------~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~ 611 (624)
.+.....+.|+ ...+|+||||+|.+|+.|++.|||+|.|.+ +.|+|.|++++++
T Consensus 115 --------dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~-------~~v~i~G~~~~i~ 179 (219)
T 2e3u_A 115 --------EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG-------KTVAIIGNPIQIE 179 (219)
T ss_dssp --------TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET-------TEEEEEECHHHHH
T ss_pred --------CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC-------eEEEEEeCHHHHH
Confidence 00001112222 236899999999999999999999999974 4699999999999
Q ss_pred HHHHHHHHHHh
Q 006943 612 AAENLIQAFIM 622 (624)
Q Consensus 612 ~A~~lI~~~i~ 622 (624)
.|+.+|+++|.
T Consensus 180 ~A~~~i~~li~ 190 (219)
T 2e3u_A 180 IAKTAIEKLAR 190 (219)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999999985
No 17
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.61 E-value=8.3e-16 Score=122.68 Aligned_cols=72 Identities=26% Similarity=0.509 Sum_probs=67.5
Q ss_pred CcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHhhC
Q 006943 553 PLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMAT 624 (624)
Q Consensus 553 ~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~~ 624 (624)
.++.+|.||.+++|+||||+|++|++|++.|||+|+|+++.++..++.|+|+|++++++.|+.||++++.++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 468999999999999999999999999999999999998777778999999999999999999999998753
No 18
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.59 E-value=1.5e-15 Score=123.05 Aligned_cols=72 Identities=31% Similarity=0.532 Sum_probs=66.5
Q ss_pred CCcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 552 PPLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 552 ~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|++..++..++.|+|+|++++++.|+.||++++..
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSS 75 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC-
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999999999999999999999876677899999999999999999999998864
No 19
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.56 E-value=8e-15 Score=121.32 Aligned_cols=71 Identities=28% Similarity=0.542 Sum_probs=66.7
Q ss_pred CcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 553 PLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 553 ~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
.++.+|.||.+++|+||||+|++|++|+++|||+|+|++..++..++.|+|+|++++++.|+.||+++|..
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEK 84 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999887667789999999999999999999999864
No 20
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.55 E-value=6.7e-15 Score=117.53 Aligned_cols=70 Identities=31% Similarity=0.545 Sum_probs=63.8
Q ss_pred cEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCC---CCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 554 LTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSK---SSRGDRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 554 ~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~---~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
.+.++.||.+++|+||||+|++|++|++.|||+|+|++.. ++..++.|+|+|++++++.|+.+|++++..
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4889999999999999999999999999999999999763 355689999999999999999999998764
No 21
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.54 E-value=6.1e-15 Score=121.28 Aligned_cols=72 Identities=33% Similarity=0.586 Sum_probs=66.9
Q ss_pred CCcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 552 PPLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 552 ~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
..++.+|.||.+++|.||||+|++|++|+++|||+|+|++..++..++.|+|+|++++++.|+.+|++++..
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999999999999999999999876677889999999999999999999999864
No 22
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.54 E-value=9e-15 Score=115.39 Aligned_cols=69 Identities=28% Similarity=0.459 Sum_probs=64.4
Q ss_pred CcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 553 PLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 553 ~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
.++.++.||.+++|.||||+|++|++|+++|||+|+|++. +..+|.|+|+|++++++.|+.+|.++|..
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999986 45789999999999999999999999864
No 23
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.54 E-value=1.6e-14 Score=138.27 Aligned_cols=144 Identities=20% Similarity=0.212 Sum_probs=100.3
Q ss_pred EEEEEEecCcccceeccCCchHHHHHHHhcCCeEEeeCCCCCCCceEEEEEccCCcccccccccccCCCCcccHHHHHHH
Q 006943 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHVKDKEDVEVDDEFNDKEPLCAAQDALL 116 (624)
Q Consensus 37 ~~~~ilvp~~~~g~vIGk~G~~I~~i~~etg~~I~v~~~~~~~~er~i~I~G~~~~~~~~~~~~~~~~~~~~~~a~~ai~ 116 (624)
-..++.||.+.+|.|||++|++|+.|+++|||+|.+.. .++.|+|++....-. .+++.
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d-----------------~~~i~ 91 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETED-----------------PLAVW 91 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCS-----------------HHHHH
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCC-----------------HHHHH
Confidence 46699999999999999999999999999999999963 356799998752211 12333
Q ss_pred HHHHHHHHhhhccC--CCcccCCCceeEE-EEE-----e------ccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCC
Q 006943 117 KVHAAIANAVANAT--DNDKKRKEKEECQ-ILV-----P------SSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASE 182 (624)
Q Consensus 117 ~v~~~i~~~~~~~~--~~~~~~~~~~~~~-llv-----p------~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~ 182 (624)
++.+.|.+-..... +...-..+...+. +-+ + ...+|+||||+|.+|+.|++.|||+|.|.
T Consensus 92 kA~~~I~~i~rg~~~e~g~~ll~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~------ 165 (219)
T 2e3u_A 92 KARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY------ 165 (219)
T ss_dssp HHHHHHHHHHTTCCHHHHGGGGSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE------
T ss_pred HHHHHHHHHhccCCccccceeccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC------
Confidence 33333322110000 0000001111121 222 2 23689999999999999999999999985
Q ss_pred CCCcccccCCceEEEecCHHHHHHHHHHHHHHHhh
Q 006943 183 PTHSCAMEFDNFVLISGESEAVKKALFAISAIMYK 217 (624)
Q Consensus 183 ~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~~ 217 (624)
++.|.|.|+.++|..|..+|.+++..
T Consensus 166 ---------~~~v~i~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 166 ---------GKTVAIIGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp ---------TTEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ---------CeEEEEEeCHHHHHHHHHHHHHHHcC
Confidence 35699999999999999999999954
No 24
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-14 Score=122.06 Aligned_cols=70 Identities=29% Similarity=0.467 Sum_probs=63.6
Q ss_pred cEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCC---CCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 554 LTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKS---SRGDRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 554 ~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~---~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.+..+ +..++.|+|+|++++|+.|+.+|+++|..
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCS
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999999999999998742 34679999999999999999999998753
No 25
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.51 E-value=2.1e-14 Score=117.72 Aligned_cols=70 Identities=31% Similarity=0.553 Sum_probs=64.4
Q ss_pred cEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCC---CCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 554 LTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSK---SSRGDRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 554 ~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~---~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
.+.+|.||.+++|+||||+|++|++|++.|||+|+|++.. ++..++.|+|+|++++++.|+.||+++|..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4889999999999999999999999999999999999863 356789999999999999999999999864
No 26
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2.5e-14 Score=121.01 Aligned_cols=69 Identities=26% Similarity=0.544 Sum_probs=64.7
Q ss_pred EEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 555 TLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 555 ~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
+.+|.||.+++|+||||+|++|++|+++|||+|+|+++.+...+|.|+|+|+++++++|+.||++++..
T Consensus 12 ~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 12 GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999999776666789999999999999999999999864
No 27
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.50 E-value=3.4e-14 Score=118.01 Aligned_cols=73 Identities=25% Similarity=0.490 Sum_probs=66.2
Q ss_pred CCCcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCC--CCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 006943 551 PPPLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKS--SRGDRVALISGTPEQKRAAENLIQAFIMA 623 (624)
Q Consensus 551 ~~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~--~~~~r~v~I~Gt~e~v~~A~~lI~~~i~~ 623 (624)
+..++.+|.||.+++|+||||+|++|++|+++|||+|+|.+... ...+|.|+|+|++++++.|+.||++++..
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 44679999999999999999999999999999999999998643 34689999999999999999999999864
No 28
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.7e-14 Score=116.18 Aligned_cols=68 Identities=28% Similarity=0.411 Sum_probs=62.3
Q ss_pred CCcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHh
Q 006943 552 PPLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622 (624)
Q Consensus 552 ~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~ 622 (624)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|++.. +++.|+|+|++++++.|+++|++++.
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~---~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD---KEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS---SCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC---CCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 356899999999999999999999999999999999999653 35889999999999999999999775
No 29
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.48 E-value=5.3e-14 Score=131.05 Aligned_cols=140 Identities=19% Similarity=0.239 Sum_probs=109.2
Q ss_pred EEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCCCCCCCCCCCcEEEEE-----eehHHHHHHHHHHHHHHhhccc
Q 006943 391 IRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKCADANDELVEVV-----GEVGSVRDALVQIILRLRDDAL 465 (624)
Q Consensus 391 ~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~p~~~~~~~~~v~I~-----G~~~~v~~A~~~I~~~l~e~~~ 465 (624)
.++.||...+|.|||++|++++.|++.+|++|++.. .++.|+|. |++.++.+|...|.+..+....
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~---------~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~ 76 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT---------ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPP 76 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET---------TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc---------CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCH
Confidence 689999999999999999999999999999999963 36778898 9999999999888765554211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 006943 466 KDRDGSRNPPVGADHIYSSGTGISMPPLLPSIPPVGPLGYDQRADSGSGIGMLSSSSLYGYGSLSMGDSPYGSMSSYSSK 545 (624)
Q Consensus 466 ~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (624)
.+-. .
T Consensus 77 e~A~---------------------------------------------------------------------------~ 81 (191)
T 1tua_A 77 EKAF---------------------------------------------------------------------------R 81 (191)
T ss_dssp HHHG---------------------------------------------------------------------------G
T ss_pred HHhh---------------------------------------------------------------------------h
Confidence 1000 0
Q ss_pred cCCCCCCCcEEEEEec----------cccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHH
Q 006943 546 LYGGLPPPLTLEVLVP----------ANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAEN 615 (624)
Q Consensus 546 ~~~~~~~~~~~~i~VP----------~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~ 615 (624)
+.. ++.....+.++ ...+|+||||+|.||+.|++.|||+|.|.+ +.|.|.|++++++.|+.
T Consensus 82 Ll~--Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~-------~~v~i~G~~~~i~~Ar~ 152 (191)
T 1tua_A 82 LLE--EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE-------YEVAIIGDYERAMAAKQ 152 (191)
T ss_dssp GGS--TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS-------SEEEEEEEHHHHHHHHH
T ss_pred ccc--CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC-------CEEEEEeChHHHHHHHH
Confidence 000 00011222233 346899999999999999999999999974 36999999999999999
Q ss_pred HHHHHHhh
Q 006943 616 LIQAFIMA 623 (624)
Q Consensus 616 lI~~~i~~ 623 (624)
.|+.+|..
T Consensus 153 ~i~~li~g 160 (191)
T 1tua_A 153 AIEMLAEG 160 (191)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99999863
No 30
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.48 E-value=9.8e-14 Score=113.05 Aligned_cols=70 Identities=23% Similarity=0.418 Sum_probs=64.0
Q ss_pred CcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCC--CCCCeEEEEEcCHHHHHHHHHHHHHHHh
Q 006943 553 PLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKS--SRGDRVALISGTPEQKRAAENLIQAFIM 622 (624)
Q Consensus 553 ~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~--~~~~r~v~I~Gt~e~v~~A~~lI~~~i~ 622 (624)
..+.+|.||.+++|.||||+|++|++|+++|||+|.|.++.. ...+|.|+|+|++++++.|+.+|++++.
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 358899999999999999999999999999999999998643 4578999999999999999999999875
No 31
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=4.9e-13 Score=110.81 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=66.3
Q ss_pred CCCCCCCcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHh
Q 006943 547 YGGLPPPLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622 (624)
Q Consensus 547 ~~~~~~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~ 622 (624)
+..+...++.+|.||.+++|.|||++|++|++|+++|||+|+|+++.. .+++.|+|+|++++++.|+.+|+.++.
T Consensus 10 v~~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~-~~~~~V~I~G~~e~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 10 VGELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA-PDPNCVTVTGLPENVEEAIDHILNLEE 84 (95)
T ss_dssp CCCTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC-SCTTEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC-CCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 344556789999999999999999999999999999999999987632 346789999999999999999999875
No 32
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.42 E-value=1e-13 Score=109.27 Aligned_cols=70 Identities=20% Similarity=0.378 Sum_probs=64.2
Q ss_pred CceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHhh
Q 006943 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMYK 217 (624)
Q Consensus 138 ~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~~ 217 (624)
..++++|+||.+++|.||||+|++|++|+++|||+|+|.+.+ ..+|+|+|.|++++|.+|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~----------~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN----------CPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSC----------CSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCC----------CCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 358899999999999999999999999999999999998642 4589999999999999999999999864
No 33
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.41 E-value=1.8e-13 Score=107.15 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=61.3
Q ss_pred CcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Q 006943 553 PLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFI 621 (624)
Q Consensus 553 ~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i 621 (624)
..+.++.||.+++|.|||++|++|++|+++|||+|+|+++. ..++.|+|+|++++++.|+.+|++++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g--~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS--EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC--SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC--CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999999999764 36689999999999999999999864
No 34
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.41 E-value=2.8e-13 Score=114.71 Aligned_cols=69 Identities=32% Similarity=0.465 Sum_probs=63.4
Q ss_pred cEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCC--CCCeEEEEEcCHHHHHHHHHHHHHHHh
Q 006943 554 LTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSS--RGDRVALISGTPEQKRAAENLIQAFIM 622 (624)
Q Consensus 554 ~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~--~~~r~v~I~Gt~e~v~~A~~lI~~~i~ 622 (624)
.+.+|.||.+++|.||||+|++|++|+++|||+|+|++..++ ..++.|+|+|++++++.|+.||++++.
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVS 85 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999986543 257999999999999999999999985
No 35
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=8.6e-13 Score=109.88 Aligned_cols=70 Identities=23% Similarity=0.344 Sum_probs=63.5
Q ss_pred CcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCC-CCCCeEEEEEcCHHHHHHHHHHHHHHHh
Q 006943 553 PLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKS-SRGDRVALISGTPEQKRAAENLIQAFIM 622 (624)
Q Consensus 553 ~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~-~~~~r~v~I~Gt~e~v~~A~~lI~~~i~ 622 (624)
.++.+|.||.+++|.|||++|++|++|+++|||+|+|+++.. ...++.|+|+|++++++.|+.+|+.++.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVG 86 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999998653 2367899999999999999999999875
No 36
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.38 E-value=1.1e-12 Score=122.05 Aligned_cols=142 Identities=20% Similarity=0.198 Sum_probs=101.8
Q ss_pred EEEEEecCcccceeccCCchHHHHHHHhcCCeEEeeCCCCCCCceEEEEEccCCcccccccccccCCCCcccHHHHHHHH
Q 006943 38 IYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHVKDKEDVEVDDEFNDKEPLCAAQDALLK 117 (624)
Q Consensus 38 ~~~ilvp~~~~g~vIGk~G~~I~~i~~etg~~I~v~~~~~~~~er~i~I~G~~~~~~~~~~~~~~~~~~~~~~a~~ai~~ 117 (624)
.++++||...+|.|||++|++++.|+++++++|.+.. .++.++|+....... ..++.+
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~d-----------------p~~i~K 62 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIP-----------------PVNLMK 62 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSC-----------------HHHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCC-----------------HHHHHH
Confidence 3689999999999999999999999999999999964 577888885433211 123444
Q ss_pred HHHHHHHhhhccC--CCcccCCCceeEEE-EEe----------ccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCC
Q 006943 118 VHAAIANAVANAT--DNDKKRKEKEECQI-LVP----------SSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPT 184 (624)
Q Consensus 118 v~~~i~~~~~~~~--~~~~~~~~~~~~~l-lvp----------~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~ 184 (624)
+.+.|.+-....+ +...-..+...+.+ -++ ....|+||||+|.+++.|++.|||+|.|..
T Consensus 63 A~dlI~ai~rgf~~e~A~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~------- 135 (191)
T 1tua_A 63 AAEVVKAISLGFPPEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE------- 135 (191)
T ss_dssp HHHHHHHHHHTCCHHHHGGGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS-------
T ss_pred HHHHHHHHHcCCCHHHhhhcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC-------
Confidence 4444322111110 00111122233332 233 236899999999999999999999999853
Q ss_pred CcccccCCceEEEecCHHHHHHHHHHHHHHHh
Q 006943 185 HSCAMEFDNFVLISGESEAVKKALFAISAIMY 216 (624)
Q Consensus 185 ~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~ 216 (624)
+.|.|.|+.+++..|...|.+++.
T Consensus 136 --------~~v~i~G~~~~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 136 --------YEVAIIGDYERAMAAKQAIEMLAE 159 (191)
T ss_dssp --------SEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred --------CEEEEEeChHHHHHHHHHHHHHHc
Confidence 479999999999999999999995
No 37
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=6.6e-13 Score=110.13 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=65.0
Q ss_pred CCCCCCcEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHh
Q 006943 548 GGLPPPLTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622 (624)
Q Consensus 548 ~~~~~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~ 622 (624)
..+...++.+|.||.+++|.|||+||.+|++|+++|||+|+|++..+ .++.|+|+|++++++.|+.+|++++.
T Consensus 11 ~~l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~--~~~~V~I~G~~e~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 11 ARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDD--PSNQIKITGTKEGIEKARHEVLLISA 83 (94)
T ss_dssp CCCCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTS--SCCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHhCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCC--CCCeEEEEECHHHHHHHHHHHHHHhh
Confidence 34556789999999999999999999999999999999999997532 34789999999999999999999875
No 38
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.36 E-value=3.8e-13 Score=107.18 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=65.0
Q ss_pred CceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHhh
Q 006943 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMYK 217 (624)
Q Consensus 138 ~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~~ 217 (624)
..++++|+||.+++|.||||+|++|++|+++|||+|+|... ++.+++|.|+|+|++++|.+|+.+|.+++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--------~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP--------VEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC--------CTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC--------CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 46889999999999999999999999999999999999752 2346799999999999999999999999853
No 39
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.35 E-value=8.6e-13 Score=106.64 Aligned_cols=73 Identities=23% Similarity=0.439 Sum_probs=65.5
Q ss_pred CceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHhh
Q 006943 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMYK 217 (624)
Q Consensus 138 ~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~~ 217 (624)
..++++|+||.+++|.||||+|++|++|+++|||+|+|... ++.+++|.|+|+|++++|.+|+.+|.+++.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--------~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--------LEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--------TSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--------CCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999752 2235789999999999999999999999976
Q ss_pred c
Q 006943 218 F 218 (624)
Q Consensus 218 ~ 218 (624)
.
T Consensus 77 ~ 77 (82)
T 1zzk_A 77 Y 77 (82)
T ss_dssp H
T ss_pred c
Confidence 4
No 40
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.35 E-value=6.1e-13 Score=106.10 Aligned_cols=73 Identities=26% Similarity=0.335 Sum_probs=64.3
Q ss_pred ceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHh
Q 006943 139 KEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMY 216 (624)
Q Consensus 139 ~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~ 216 (624)
..+++|+||.+++|.||||+|++|++|+++|||+|+|.+.+. .++.++++.|+|+|++++|.+|+.+|.+++.
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~-----~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGE-----FLPGTRNRRVTITGSPAATQAAQYLISQRVT 74 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTC-----CSTTCCEEEEEEEESHHHHHHHHHHHHHHCC
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCC-----CCCCCceeEEEEEeCHHHHHHHHHHHHHHHh
Confidence 367899999999999999999999999999999999987432 2334678999999999999999999999874
No 41
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=5.9e-13 Score=107.66 Aligned_cols=74 Identities=22% Similarity=0.339 Sum_probs=65.1
Q ss_pred CCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHh
Q 006943 137 KEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMY 216 (624)
Q Consensus 137 ~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~ 216 (624)
...++++|+||.+++|.||||+|++|++|+++|||+|+|... ++.+++|.|+|+|++++|.+|+.+|.+++.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--------~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP--------VEGSSGRQVTITGSAASISLAQYLINARLS 74 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC--------CTTCSEEEEEEEECHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC--------CCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999763 233679999999999999999999999986
Q ss_pred hc
Q 006943 217 KF 218 (624)
Q Consensus 217 ~~ 218 (624)
+.
T Consensus 75 ~~ 76 (82)
T 1wvn_A 75 SE 76 (82)
T ss_dssp --
T ss_pred hh
Confidence 53
No 42
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.31 E-value=1.1e-12 Score=107.84 Aligned_cols=75 Identities=24% Similarity=0.432 Sum_probs=66.8
Q ss_pred CCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHh
Q 006943 137 KEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMY 216 (624)
Q Consensus 137 ~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~ 216 (624)
...++++|+||.+++|.||||+|++|++|+++|||+|+|... ++.+++|.|+|+|++++|.+|+.+|.+++.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--------~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--------LEGSEDRIITITGTQDQIQNAQYLLQNSVK 82 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--------CSSSSEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--------CCCCCccEEEEEcCHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999752 233678999999999999999999999997
Q ss_pred hcC
Q 006943 217 KFS 219 (624)
Q Consensus 217 ~~~ 219 (624)
+.+
T Consensus 83 e~~ 85 (89)
T 1j5k_A 83 QYS 85 (89)
T ss_dssp HHC
T ss_pred hhh
Confidence 653
No 43
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=1.3e-12 Score=106.85 Aligned_cols=74 Identities=26% Similarity=0.296 Sum_probs=65.4
Q ss_pred eeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHhhc
Q 006943 140 EECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMYKF 218 (624)
Q Consensus 140 ~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~~~ 218 (624)
++++|+||.+++|.||||+|++|++|+++|||+|.|...+. .++.++++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-----~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGE-----FLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTC-----BSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCC-----CCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 67899999999999999999999999999999999986421 234467899999999999999999999998653
No 44
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=8.6e-13 Score=106.15 Aligned_cols=70 Identities=27% Similarity=0.364 Sum_probs=63.2
Q ss_pred CCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHH
Q 006943 136 RKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIM 215 (624)
Q Consensus 136 ~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l 215 (624)
....++++|.||.+++|+||||+|++||+|+++|||+|+|++. .++++|+|+|.+++|++|+.+|.+++
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~-----------~~~~~v~ItG~~e~v~~A~~~I~~~i 74 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR-----------DKEPVFAVTGMPENVDRAREEIEAHI 74 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS-----------SSCCEEEEEECTTTHHHHHHHHHHHH
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC-----------CCCCeEEEEcCHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999753 24689999999999999999999987
Q ss_pred h
Q 006943 216 Y 216 (624)
Q Consensus 216 ~ 216 (624)
.
T Consensus 75 ~ 75 (83)
T 2dgr_A 75 T 75 (83)
T ss_dssp H
T ss_pred h
Confidence 4
No 45
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.28 E-value=3.5e-12 Score=105.37 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=66.2
Q ss_pred CCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHh
Q 006943 137 KEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMY 216 (624)
Q Consensus 137 ~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~ 216 (624)
...++.+|+||.+++|.||||+|++|++|+++|||+|+|.... +...+|.|+|+|++++|.+|+.+|.+++.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--------~g~~~r~v~I~G~~e~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS--------GGLPERSCMLTGTPESVQSAKRLLDQIVE 83 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC--------TTCSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC--------CCCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999998642 12468999999999999999999999997
Q ss_pred hc
Q 006943 217 KF 218 (624)
Q Consensus 217 ~~ 218 (624)
+.
T Consensus 84 ~~ 85 (92)
T 1x4n_A 84 KG 85 (92)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 46
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.28 E-value=5.2e-12 Score=102.78 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=64.4
Q ss_pred CceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHh
Q 006943 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMY 216 (624)
Q Consensus 138 ~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~ 216 (624)
...+.+|.||.+++|.||||+|++|++|+++|||+|.|..... .+.+.+|.|+|+|++++|.+|+.+|.++++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~------~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS------QNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSC------SSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCC------CCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 4577899999999999999999999999999999999987432 123678999999999999999999999875
No 47
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=4.7e-12 Score=106.80 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=61.5
Q ss_pred cEEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHh
Q 006943 554 LTLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622 (624)
Q Consensus 554 ~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~ 622 (624)
.+.+|.||.+++|.|||+||++|++|+++|||+|+|+++.. ..+.|+|+|++++++.|+.+|++++.
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~--~~~~V~I~G~~e~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL--QSDIIAITGLAANLDRAKAGLLERVK 83 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT--TCCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC--CcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999997643 34689999999999999999999875
No 48
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.26 E-value=2.6e-12 Score=106.58 Aligned_cols=76 Identities=21% Similarity=0.349 Sum_probs=66.8
Q ss_pred CCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHH
Q 006943 136 RKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIM 215 (624)
Q Consensus 136 ~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l 215 (624)
....++.+|+||.+++|.||||+|++|++|+++|||+|+|...... ...++|.|+|+|++++|.+|+.+|.+++
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~------~~~~~r~v~I~G~~~~v~~A~~~I~~~i 84 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ------NTGADKPLRITGDPYKVQQAKEMVLELI 84 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC------SSCSCEEEEEEECTTTHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCC------CCCCceEEEEEeCHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999864321 1247899999999999999999999999
Q ss_pred hh
Q 006943 216 YK 217 (624)
Q Consensus 216 ~~ 217 (624)
.+
T Consensus 85 ~~ 86 (94)
T 1x4m_A 85 RD 86 (94)
T ss_dssp CC
T ss_pred hc
Confidence 65
No 49
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=4.4e-12 Score=107.80 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=63.3
Q ss_pred eEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHhh
Q 006943 141 ECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMYK 217 (624)
Q Consensus 141 ~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~~ 217 (624)
+++|+||.+++|.||||+|++|++|+++|||+|+|...... ....++++|+|+|+.++|.+|+.+|.+++.+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~-----~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPP-----NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT-----TCCTTEEEEEEESCHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCC-----CCCCCceEEEEECCHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999874321 1224679999999999999999999999865
No 50
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=1.5e-11 Score=101.67 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=65.5
Q ss_pred CCCCCCcEEEEEeccccccceeccCCchHHHHHHHh-CCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHh
Q 006943 548 GGLPPPLTLEVLVPANAVGKVIGKAGSNLANIRKIS-GATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622 (624)
Q Consensus 548 ~~~~~~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~s-Ga~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~ 622 (624)
..+.+.++.+|.||.++++.|||++|.+|++|+++| ||+|.|+++. ...+.|+|+|+.+++++|+.+|++++.
T Consensus 11 ~e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g--~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 11 KDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG--SGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CCCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT--TTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC--CCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 445667899999999999999999999999999999 9999998763 345689999999999999999999875
No 51
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=6.1e-12 Score=106.30 Aligned_cols=72 Identities=18% Similarity=0.348 Sum_probs=63.7
Q ss_pred eeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHhhcC
Q 006943 140 EECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMYKFS 219 (624)
Q Consensus 140 ~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~~~~ 219 (624)
.+++|+||.++++.||||+|++|++|+++|||+|+|.++.. ...+|+|+|+|++++|.+|+.+|.+++.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~--------~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG--------TGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS--------SSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC--------CCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 47899999999999999999999999999999999986431 2468999999999999999999999997643
No 52
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.22 E-value=8.1e-12 Score=103.46 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=67.5
Q ss_pred cCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHH
Q 006943 135 KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAI 214 (624)
Q Consensus 135 ~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~ 214 (624)
..+..++..|.||..+++.|||++|++|++|+++|||+|+|+.... .+++.|+|+|.+++|.+|+.+|..+
T Consensus 12 ~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~---------~~~~~V~I~G~~e~v~~A~~~I~~i 82 (95)
T 2ctm_A 12 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA---------PDPNCVTVTGLPENVEEAIDHILNL 82 (95)
T ss_dssp CTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC---------SCTTEEEEESCHHHHHHHHHHHHHH
T ss_pred hhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC---------CCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 3566799999999999999999999999999999999999975321 2468999999999999999999999
Q ss_pred HhhcCC
Q 006943 215 MYKFSP 220 (624)
Q Consensus 215 l~~~~~ 220 (624)
+.++..
T Consensus 83 ~~e~~~ 88 (95)
T 2ctm_A 83 EEEYLA 88 (95)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 877543
No 53
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.21 E-value=6e-12 Score=98.50 Aligned_cols=68 Identities=24% Similarity=0.474 Sum_probs=60.2
Q ss_pred CceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHH
Q 006943 138 EKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIM 215 (624)
Q Consensus 138 ~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l 215 (624)
...+..|.||..+++.|||++|++|++|+++|||+|+|+..+ ..++.|+|+|+.++|.+|+.+|..++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g----------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS----------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC----------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC----------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 356788999999999999999999999999999999997632 24689999999999999999998754
No 54
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=9.5e-12 Score=103.11 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=65.5
Q ss_pred CCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHH
Q 006943 136 RKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIM 215 (624)
Q Consensus 136 ~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l 215 (624)
....++..|.||..++|.|||++|++|++|+++|||+|+|+..+ ..++.|+|+|++++|.+|+.+|..++
T Consensus 13 l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~----------~~~~~V~I~G~~e~v~~A~~~I~~i~ 82 (94)
T 2cte_A 13 LQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD----------DPSNQIKITGTKEGIEKARHEVLLIS 82 (94)
T ss_dssp CCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT----------SSCCEEEEEECHHHHHHHHHHHHHHH
T ss_pred hCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC----------CCCCeEEEEECHHHHHHHHHHHHHHh
Confidence 45578999999999999999999999999999999999997532 23578999999999999999999998
Q ss_pred hhcC
Q 006943 216 YKFS 219 (624)
Q Consensus 216 ~~~~ 219 (624)
.+..
T Consensus 83 ~~~~ 86 (94)
T 2cte_A 83 AEQD 86 (94)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7643
No 55
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.19 E-value=1.9e-11 Score=103.46 Aligned_cols=77 Identities=25% Similarity=0.350 Sum_probs=66.6
Q ss_pred CCcEEEEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCCCCCCCCCCCcEEEEEeehHHHHHHHHHHHHHHhhcc
Q 006943 386 DDTVTIRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKCADANDELVEVVGEVGSVRDALVQIILRLRDDA 464 (624)
Q Consensus 386 ~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~e~~ 464 (624)
..+++.+|.||.+++|.|||++|++|++|+++|||+|+|.+...+. ...++.|+|+|+.+++.+|+.+|.+.+.+..
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT--LLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS--SSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC--CCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 3567899999999999999999999999999999999998654321 2358999999999999999999999887653
No 56
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.16 E-value=3.1e-11 Score=100.41 Aligned_cols=73 Identities=18% Similarity=0.326 Sum_probs=63.7
Q ss_pred CcEEEEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCCCCCCCCCCCcEEEEEeehHHHHHHHHHHHHHHhh
Q 006943 387 DTVTIRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKCADANDELVEVVGEVGSVRDALVQIILRLRD 462 (624)
Q Consensus 387 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~e 462 (624)
..+++.|.||..+|+.|||++|++|++|+++|||+|+|+++..| ...++.|+|+|+.+++.+|+.+|...+.+
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDG---NQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTC---SSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCC---CCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999875543 23678999999999999999988876654
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.14 E-value=7.6e-11 Score=98.81 Aligned_cols=64 Identities=27% Similarity=0.405 Sum_probs=59.2
Q ss_pred cEEEEEeccccccceeccCCchHHHHHHH-hCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHh
Q 006943 554 LTLEVLVPANAVGKVIGKAGSNLANIRKI-SGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622 (624)
Q Consensus 554 ~~~~i~VP~~~vg~IIGkgG~~I~~I~~~-sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~ 622 (624)
++.+|.||..++++|||++|++|++|+++ ++++|+|++ .++.|+|+|++++|++|+.+|+.++.
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTEDVSVAQEQIEGMVK 91 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999997 599999997 24689999999999999999999875
No 58
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.05 E-value=1.2e-10 Score=96.24 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=67.1
Q ss_pred ccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhc-CCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHH
Q 006943 134 KKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKT-RTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAIS 212 (624)
Q Consensus 134 ~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~s-ga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~ 212 (624)
+..++.++..|.||..+++.|||++|++|++|+++| ||+|+|+..+ +..+.|+|.|+.++|.+|+.+|.
T Consensus 11 ~e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g----------~~~~~V~I~G~~~~v~~A~~~I~ 80 (95)
T 2ctj_A 11 KDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG----------SGSDTVVIRGPSSDVEKAKKQLL 80 (95)
T ss_dssp CCCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT----------TTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC----------CCcceEEEEcCHHHHHHHHHHHH
Confidence 346778999999999999999999999999999999 9999997532 34578999999999999999999
Q ss_pred HHHhhcC
Q 006943 213 AIMYKFS 219 (624)
Q Consensus 213 ~~l~~~~ 219 (624)
.++.+..
T Consensus 81 ~iv~e~e 87 (95)
T 2ctj_A 81 HLAEEKQ 87 (95)
T ss_dssp HHHHHHS
T ss_pred HHHhhhh
Confidence 9997643
No 59
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.04 E-value=1.2e-10 Score=98.07 Aligned_cols=71 Identities=15% Similarity=0.290 Sum_probs=62.4
Q ss_pred ceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHhhc
Q 006943 139 KEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMYKF 218 (624)
Q Consensus 139 ~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~~~ 218 (624)
..+..|.||..+++.|||++|++|++|+++|||+|+|+..+ ...+.|+|+|+.++|.+|+.+|..++.+.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g----------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE----------LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT----------TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC----------CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 36788999999999999999999999999999999997632 13468999999999999999999988664
Q ss_pred C
Q 006943 219 S 219 (624)
Q Consensus 219 ~ 219 (624)
.
T Consensus 86 e 86 (104)
T 2ctk_A 86 Q 86 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.97 E-value=8.5e-10 Score=92.42 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=59.8
Q ss_pred CcEEEEEEecCCeeeEEEcCCCchHHHHHHh-cCceEEEeCCCCCCCCCCCCcEEEEEeehHHHHHHHHHHHHHHhhc
Q 006943 387 DTVTIRLLVSSKVIGCIIGKSGSIINEIRKR-TKADVRISKGDKPKCADANDELVEVVGEVGSVRDALVQIILRLRDD 463 (624)
Q Consensus 387 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~-tga~I~i~~~~~p~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~e~ 463 (624)
..++.+|.||..+|++|||++|++|++|+++ ++++|+|++ .++.|+|+|+++.|.+|..+|...+.+.
T Consensus 25 ~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~---------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 25 SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE---------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS---------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC---------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 3488999999999999999999999999997 499999975 2568999999999999999997777553
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.95 E-value=4.6e-10 Score=90.70 Aligned_cols=62 Identities=27% Similarity=0.483 Sum_probs=56.6
Q ss_pred CcEEEEEeccccccceeccCCchHHHHHHHhCCE-EEEeCCCCCCCCeEEEEEc-CHHHHHHHHHHHHH
Q 006943 553 PLTLEVLVPANAVGKVIGKAGSNLANIRKISGAT-IEMSDSKSSRGDRVALISG-TPEQKRAAENLIQA 619 (624)
Q Consensus 553 ~~~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~-I~i~~~~~~~~~r~v~I~G-t~e~v~~A~~lI~~ 619 (624)
.+..++.||.+++|.|||++|.+|++|+++|||+ |.|.++ +..|+|.| +.+++++|+.+|+.
T Consensus 14 ~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed-----dG~V~I~g~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 14 AFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED-----TGTFRIYGESADAVKKARGFLEF 77 (91)
T ss_dssp SEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHSC
T ss_pred ceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC-----CCEEEEEECCHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999998 999852 36799999 89999999999964
No 62
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.68 E-value=3.8e-08 Score=86.02 Aligned_cols=71 Identities=28% Similarity=0.388 Sum_probs=60.0
Q ss_pred CCcEEEEEeccc------cccceeccCCchHHHHHHHhCCEEEEeCCCC----------------CCCCeEEEEEc-CHH
Q 006943 552 PPLTLEVLVPAN------AVGKVIGKAGSNLANIRKISGATIEMSDSKS----------------SRGDRVALISG-TPE 608 (624)
Q Consensus 552 ~~~~~~i~VP~~------~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~----------------~~~~r~v~I~G-t~e 608 (624)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..... ...+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 456899999988 8899999999999999999999999986321 11245788999 689
Q ss_pred HHHHHHHHHHHHHh
Q 006943 609 QKRAAENLIQAFIM 622 (624)
Q Consensus 609 ~v~~A~~lI~~~i~ 622 (624)
.++.|..+|+.++.
T Consensus 85 ~~~~A~~~I~~ll~ 98 (131)
T 1k1g_A 85 NVKKAVEQIRNILK 98 (131)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999985
No 63
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.65 E-value=1.5e-08 Score=81.85 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=59.5
Q ss_pred cccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCe-EEEccCCCCCCCCcccccCCceEEEec-CHHHHHHHHHH
Q 006943 133 DKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTS-IKVTPKDASEPTHSCAMEFDNFVLISG-ESEAVKKALFA 210 (624)
Q Consensus 133 ~~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~-I~i~~~~~~~~~~~~~~~~~r~V~I~G-~~~~V~~A~~~ 210 (624)
.+.....+...|.||...++.+||++|++|++|+++|||+ |.|.. ++..|+|.| +.+++.+|+.+
T Consensus 8 ~~~~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-------------ddG~V~I~g~~~ea~~~A~~~ 74 (91)
T 2cpq_A 8 TKQLAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-------------DTGTFRIYGESADAVKKARGF 74 (91)
T ss_dssp CSSSSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-------------TTTEEEEEESSHHHHHHHHHH
T ss_pred hhhccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-------------CCCEEEEEECCHHHHHHHHHH
Confidence 3455667888999999999999999999999999999998 99952 358899999 79999999987
Q ss_pred HHHH
Q 006943 211 ISAI 214 (624)
Q Consensus 211 I~~~ 214 (624)
|..+
T Consensus 75 I~~i 78 (91)
T 2cpq_A 75 LEFV 78 (91)
T ss_dssp HSCC
T ss_pred HHhh
Confidence 7543
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=1.2e-07 Score=81.11 Aligned_cols=70 Identities=24% Similarity=0.242 Sum_probs=55.7
Q ss_pred cEEEEEeccc-------cccceeccCCchHHHHHHHhCCEEEEeCCCCC----------CCCeEEEEEc-CHHHHHHHHH
Q 006943 554 LTLEVLVPAN-------AVGKVIGKAGSNLANIRKISGATIEMSDSKSS----------RGDRVALISG-TPEQKRAAEN 615 (624)
Q Consensus 554 ~~~~i~VP~~-------~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~----------~~~r~v~I~G-t~e~v~~A~~ 615 (624)
.+.+|.||-+ ++|.|||++|.+|++|+++|||+|.|...... ..+-.|.|++ +++++++|+.
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 4677877765 78999999999999999999999999743210 1233577775 6999999999
Q ss_pred HHHHHHhh
Q 006943 616 LIQAFIMA 623 (624)
Q Consensus 616 lI~~~i~~ 623 (624)
||++++..
T Consensus 92 ~Ie~Ll~~ 99 (119)
T 2yqr_A 92 LCENLLQT 99 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 99999863
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.36 E-value=6e-07 Score=78.41 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=62.2
Q ss_pred CceeEEEEEecc------ceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCC--------CcccccCCceEEEecC-HH
Q 006943 138 EKEECQILVPSS------QSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPT--------HSCAMEFDNFVLISGE-SE 202 (624)
Q Consensus 138 ~~~~~~llvp~~------~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~--------~~~~~~~~r~V~I~G~-~~ 202 (624)
..++.+|.||.. ++|.|||++|.+||+|+++|||+|.|..+...... +......+-.|.|++. .+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 357889999988 78899999999999999999999999875321100 0001123557889995 79
Q ss_pred HHHHHHHHHHHHHhh
Q 006943 203 AVKKALFAISAIMYK 217 (624)
Q Consensus 203 ~V~~A~~~I~~~l~~ 217 (624)
++.+|+.+|..+|.+
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999965
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=6.1e-07 Score=76.70 Aligned_cols=80 Identities=10% Similarity=0.074 Sum_probs=59.2
Q ss_pred ceeEEEEEecc-------ceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCC--CcccccCCceEEEecC-HHHHHHHH
Q 006943 139 KEECQILVPSS-------QSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPT--HSCAMEFDNFVLISGE-SEAVKKAL 208 (624)
Q Consensus 139 ~~~~~llvp~~-------~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~--~~~~~~~~r~V~I~G~-~~~V~~A~ 208 (624)
.++.+|.||-. ++|.|||++|.+||+|+++|||+|.|..+...... ......++-.|.|.+. .+++.+|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 46677888765 78999999999999999999999999865321100 0001123446778765 89999999
Q ss_pred HHHHHHHhhc
Q 006943 209 FAISAIMYKF 218 (624)
Q Consensus 209 ~~I~~~l~~~ 218 (624)
.+|.+++.+.
T Consensus 91 ~~Ie~Ll~~v 100 (119)
T 2yqr_A 91 KLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhch
Confidence 9999999754
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.09 E-value=2.2e-06 Score=75.16 Aligned_cols=68 Identities=19% Similarity=0.339 Sum_probs=53.0
Q ss_pred EEEEEeccc------cccceeccCCchHHHHHHHhCCEEEEeCCCCC------------------CCCeEEEEEcC-HH-
Q 006943 555 TLEVLVPAN------AVGKVIGKAGSNLANIRKISGATIEMSDSKSS------------------RGDRVALISGT-PE- 608 (624)
Q Consensus 555 ~~~i~VP~~------~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~------------------~~~r~v~I~Gt-~e- 608 (624)
+.+|.||-+ ++|.|||++|.++|+|+++|||+|.|....+. ..+--|.|++. ++
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 556777744 48999999999999999999999999965321 01126788883 43
Q ss_pred ----HHHHHHHHHHHHHh
Q 006943 609 ----QKRAAENLIQAFIM 622 (624)
Q Consensus 609 ----~v~~A~~lI~~~i~ 622 (624)
.++.|+.+|+.++.
T Consensus 83 ~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHCC
Confidence 78999999999875
No 68
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.00 E-value=6.7e-06 Score=90.55 Aligned_cols=61 Identities=25% Similarity=0.368 Sum_probs=53.9
Q ss_pred EEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcC-HHHHHHHHHHHHHHH
Q 006943 555 TLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGT-PEQKRAAENLIQAFI 621 (624)
Q Consensus 555 ~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt-~e~v~~A~~lI~~~i 621 (624)
...+.||.+++|.|||+||.+|+.|+++|||+|.|.++ ..|.|.|+ .++.++|+.+|++++
T Consensus 568 ~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~------G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 568 VETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE------ETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS------SEEEEEESSHHHHHHHHHHTTC--
T ss_pred EEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCC------cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999999853 45899886 788999999998765
No 69
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.98 E-value=1.9e-05 Score=67.51 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=60.7
Q ss_pred EEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHh
Q 006943 555 TLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQAFIM 622 (624)
Q Consensus 555 ~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~~~i~ 622 (624)
-..+.|....++.|+|++|+.|+.|+..|.|.|+|..-.+ ++...|+|.|++..-..|+.||+.+..
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999998754 467789999999999999999998753
No 70
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.98 E-value=1.8e-05 Score=69.39 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=52.3
Q ss_pred EEEEEEecCC------ccceeeccCcchHHHHHhHhCCeEEEcCCCC------------------CCCceEEEEeecCCc
Q 006943 308 LVIRVLCPFN------KIGRVIGKGGGTIKSIRQASGAQIDVDDTKD------------------NRDECVITVTAIESP 363 (624)
Q Consensus 308 ~~~~i~vp~~------~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~------------------~~~er~i~I~G~~~~ 363 (624)
++.++.||.+ ++|.|||++|.++|+|+++|||+|.|..... ..+.-.|.|++....
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 4567777754 4899999999999999999999999974221 112236888886444
Q ss_pred hhHHHHHHHHHHHHhhcc
Q 006943 364 DDIKSMAVEAVLLLQTKI 381 (624)
Q Consensus 364 ~~a~~~~~~~i~~~~~~~ 381 (624)
..|...+..|+..+...+
T Consensus 82 ~~~~~~l~~A~~~I~~lL 99 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLL 99 (140)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHC
Confidence 445555666666666544
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.74 E-value=1.9e-05 Score=86.97 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=69.6
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCcccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcc
Q 006943 108 LCAAQDALLKVHAAIANAVANATDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSC 187 (624)
Q Consensus 108 ~~~a~~ai~~v~~~i~~~~~~~~~~~~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~ 187 (624)
+..|.+++..+++.+.+.+....... ...-.....|.||.+.++.|||++|++||.|+++|||+|.|.
T Consensus 536 L~~A~~g~~~I~~~m~~al~~~~~~~-~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~----------- 603 (630)
T 3u1k_A 536 IQQASVAKKEILQIMNKTISKPRASR-KENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV----------- 603 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCSSC-CTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-cccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-----------
Confidence 44566777777777666665432211 122234667899999999999999999999999999999985
Q ss_pred cccCCceEEEecC-HHHHHHHHHHHHHHH
Q 006943 188 AMEFDNFVLISGE-SEAVKKALFAISAIM 215 (624)
Q Consensus 188 ~~~~~r~V~I~G~-~~~V~~A~~~I~~~l 215 (624)
++..|.|.|+ .+++.+|+.+|..++
T Consensus 604 ---d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 604 ---DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp ---SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 3567999998 588999999886654
No 72
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.39 E-value=9e-05 Score=82.49 Aligned_cols=62 Identities=23% Similarity=0.407 Sum_probs=11.3
Q ss_pred EEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEc-CHHHHHHHHHHHHHHHh
Q 006943 555 TLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISG-TPEQKRAAENLIQAFIM 622 (624)
Q Consensus 555 ~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~G-t~e~v~~A~~lI~~~i~ 622 (624)
..++.||.++++.|||+||.+|+.|.++||++|.|.++ -.|.|.+ ..++.+.|+.+|+.++.
T Consensus 571 ~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd------G~v~I~~~~~~~~~~A~~~i~~i~~ 633 (726)
T 4aid_A 571 IETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD------GVVKVSASDGAKIKAAIDWIKSITD 633 (726)
T ss_dssp -------------------------------------------------CCSCHHHHHHHHHC------
T ss_pred EEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC------ceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 56789999999999999999999999999999999853 3477766 48899999999988764
No 73
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.36 E-value=7.3e-05 Score=65.94 Aligned_cols=102 Identities=24% Similarity=0.370 Sum_probs=73.9
Q ss_pred EEEEEEecCcccceeccCCchHHHHHHHhcCCeEEeeCCCCCCCceEEEEEccCCcccccccccccCCCCcccHHHHHHH
Q 006943 37 VIYRILCPDGVIGSVIGKSGKVINSIRQETRARVKVVDPFPGAKDRVVTIYSHVKDKEDVEVDDEFNDKEPLCAAQDALL 116 (624)
Q Consensus 37 ~~~~ilvp~~~~g~vIGk~G~~I~~i~~etg~~I~v~~~~~~~~er~i~I~G~~~~~~~~~~~~~~~~~~~~~~a~~ai~ 116 (624)
-.+.++|+...+|+.||++|++|+.|+++.|-+|.|-+-. ++
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s--------------~d------------------------ 77 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYS--------------SD------------------------ 77 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECC--------------SS------------------------
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcC--------------CC------------------------
Confidence 5678899999999999999999999999999999885421 01
Q ss_pred HHHHHHHHhhhccC--C-CcccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEcc
Q 006943 117 KVHAAIANAVANAT--D-NDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTP 177 (624)
Q Consensus 117 ~v~~~i~~~~~~~~--~-~~~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~ 177 (624)
..+.+...+.+.. . ...+.++.....+.||..+.+..|||+|.+++-...-||.+|.|..
T Consensus 78 -~~~fI~naLsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 78 -LERIVKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp -HHHHHHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred -HHHHHHHhcCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 0011222222110 0 0000133567788999999999999999999999999999887753
No 74
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.24 E-value=0.00031 Score=60.11 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=60.7
Q ss_pred eeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcccccCCceEEEecCHHHHHHHHHHHHHHHhh
Q 006943 140 EECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSCAMEFDNFVLISGESEAVKKALFAISAIMYK 217 (624)
Q Consensus 140 ~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~~~~~~r~V~I~G~~~~V~~A~~~I~~~l~~ 217 (624)
-++.+.+...+++.|+|++|+.|+.|+..|++.|+|...+. ++.-.|+|.|++..=..|+.+|..+..-
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s---------~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP---------ERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT---------TSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC---------CCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999987542 3456799999999999999999887743
No 75
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.17 E-value=0.00019 Score=79.92 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCcccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcc
Q 006943 108 LCAAQDALLKVHAAIANAVANATDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSC 187 (624)
Q Consensus 108 ~~~a~~ai~~v~~~i~~~~~~~~~~~~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~ 187 (624)
+..|.+++..+++.+.+.+...-...+ ..-.....+.||.+.++.|||++|++||+|.++||++|.|.
T Consensus 539 L~~A~~g~~~I~~~m~~al~~~r~~~~-~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~----------- 606 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDAPRADVG-DFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN----------- 606 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCSSCC-SSCCC-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhc-ccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-----------
Confidence 445666666666666555543211111 11123456899999999999999999999999999999885
Q ss_pred cccCCceEEEecC-HHHHHHHHHHHHHHHhhc
Q 006943 188 AMEFDNFVLISGE-SEAVKKALFAISAIMYKF 218 (624)
Q Consensus 188 ~~~~~r~V~I~G~-~~~V~~A~~~I~~~l~~~ 218 (624)
++..|.|.+. .+++.+|+.+|..++.+.
T Consensus 607 ---ddG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 607 ---DDGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp ----------CCSCHHHHHHHHHC--------
T ss_pred ---CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 2456788877 789999999998887543
No 76
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.15 E-value=4.6e-05 Score=67.22 Aligned_cols=101 Identities=23% Similarity=0.305 Sum_probs=72.0
Q ss_pred EEEEEecCCccceeeccCcchHHHHHhHhCCeEEEcCCCCCCCceEEEEeecCCchhHHHHHHHHHH--HHhhccCCCCC
Q 006943 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVL--LLQTKINDEDD 386 (624)
Q Consensus 309 ~~~i~vp~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~er~i~I~G~~~~~~a~~~~~~~i~--~~~~~~~~~~~ 386 (624)
...|.|+...+|..||++|+.|+.|+++.|-+|.+-.-.. +. ...+..++. .+..-.....+
T Consensus 37 r~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~-------------d~---~~fI~naLsPA~V~~V~i~~~~ 100 (144)
T 2cxc_A 37 RLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSS-------------DL---ERIVKNLFPGVKIESINVRERN 100 (144)
T ss_dssp EEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS-------------SH---HHHHHHHSTTSCEEEEEEEEET
T ss_pred EEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCC-------------CH---HHHHHHhcCCceEEEEEEeecC
Confidence 6678899999999999999999999999999998743211 11 111222221 00000000013
Q ss_pred CcEEEEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEe
Q 006943 387 DTVTIRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRIS 425 (624)
Q Consensus 387 ~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~ 425 (624)
+.....+.||..+.+..|||+|.+++-..+-||.+|.|.
T Consensus 101 ~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 101 GVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp TEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred CcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 456788999999999999999999999999999887664
No 77
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.27 E-value=0.019 Score=58.25 Aligned_cols=95 Identities=21% Similarity=0.281 Sum_probs=67.0
Q ss_pred cccceeccCCchHHHHHHHhc-CCeEEeeCCCCCCCceEEEEEccCCcccccccccccCCCCcccHHHHHHHHHHHHHHH
Q 006943 46 GVIGSVIGKSGKVINSIRQET-RARVKVVDPFPGAKDRVVTIYSHVKDKEDVEVDDEFNDKEPLCAAQDALLKVHAAIAN 124 (624)
Q Consensus 46 ~~~g~vIGk~G~~I~~i~~et-g~~I~v~~~~~~~~er~i~I~G~~~~~~~~~~~~~~~~~~~~~~a~~ai~~v~~~i~~ 124 (624)
+-+|+.||++|++|+.|.++. |=+|.|-+-. ++ ....+..
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s--------------~d-------------------------p~~fi~n 289 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD--------------DD-------------------------PARFVAN 289 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC--------------SS-------------------------HHHHHHH
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcC--------------CC-------------------------HHHHHHH
Confidence 558999999999999999998 8899885421 11 0111222
Q ss_pred hhhccC-CCc-ccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCC
Q 006943 125 AVANAT-DND-KKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKD 179 (624)
Q Consensus 125 ~~~~~~-~~~-~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~ 179 (624)
++.... ..- .-........+.||..+.+..|||+|.+++-...-||.+|.|....
T Consensus 290 alsPA~V~~V~~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 290 ALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp HTTTSCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred hcCCcceeEEEEEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 222210 000 0001235678999999999999999999999999999999998643
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.22 E-value=0.016 Score=55.53 Aligned_cols=94 Identities=20% Similarity=0.284 Sum_probs=64.7
Q ss_pred cccceeccCCchHHHHHH-HhcCCeEEeeCCCCCCCceEEEEEccCCcccccccccccCCCCcccHHHHHHHHHHHHHHH
Q 006943 46 GVIGSVIGKSGKVINSIR-QETRARVKVVDPFPGAKDRVVTIYSHVKDKEDVEVDDEFNDKEPLCAAQDALLKVHAAIAN 124 (624)
Q Consensus 46 ~~~g~vIGk~G~~I~~i~-~etg~~I~v~~~~~~~~er~i~I~G~~~~~~~~~~~~~~~~~~~~~~a~~ai~~v~~~i~~ 124 (624)
+-+|+-||++|++|+.|. +-.|=+|.|-+-. ++ ....+..
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s--------------~d-------------------------p~~fi~n 166 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD--------------DD-------------------------PARFVAN 166 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC--------------SS-------------------------HHHHHHH
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEec--------------CC-------------------------HHHHHHh
Confidence 458999999999999995 5568899884421 01 0112222
Q ss_pred hhhccC-CCcc-cCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccC
Q 006943 125 AVANAT-DNDK-KRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPK 178 (624)
Q Consensus 125 ~~~~~~-~~~~-~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~ 178 (624)
++.... ..-. .......+.+.||..+.+.-|||+|.+++--..-||.+|.|...
T Consensus 167 alsPA~V~~V~i~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 167 ALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp HTTTSCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred ccCCcceEEEEEEcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 332210 0000 00112467889999999999999999999999999999999864
No 79
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.14 E-value=0.0074 Score=67.53 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=0.0
Q ss_pred EEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEc-CHHHHHHHHHHHHHHH
Q 006943 555 TLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISG-TPEQKRAAENLIQAFI 621 (624)
Q Consensus 555 ~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~G-t~e~v~~A~~lI~~~i 621 (624)
...+.||.++++.|||+||.+|+.|.+++|+.|.|.++ ..|.|++ ..+..+.|+.+|+.++
T Consensus 561 ~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~d------g~v~I~~~~~~~~~~a~~~i~~i~ 622 (723)
T 3cdi_A 561 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD------GTVKIAATDGEKAKHAIRRIEEIT 622 (723)
T ss_dssp --------------------------------------------------------------------
T ss_pred EEEEEECHHHhcccccccceeeeeeehhhCceEEecCC------ccEEEecCCHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999988852 4477766 4667788888887664
No 80
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.61 E-value=0.0039 Score=70.07 Aligned_cols=61 Identities=26% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcC-HHHHHHHHHHHHHHH
Q 006943 555 TLEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGT-PEQKRAAENLIQAFI 621 (624)
Q Consensus 555 ~~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt-~e~v~~A~~lI~~~i 621 (624)
...+.||.+++|.|||++|.+|+.|++++|+.|.|.+ +..|.|++. .+..+.|+.+|+.+.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC--------------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3457899999999999999999999999999999984 245777774 677788887777654
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.50 E-value=0.012 Score=65.73 Aligned_cols=94 Identities=24% Similarity=0.328 Sum_probs=12.1
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCcccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcc
Q 006943 108 LCAAQDALLKVHAAIANAVANATDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSC 187 (624)
Q Consensus 108 ~~~a~~ai~~v~~~i~~~~~~~~~~~~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~ 187 (624)
+..|.++...+++.+.+.+....... ...-.....+-||....+.+||++|.+|+.|.++||+.|.|..
T Consensus 529 l~~A~~~~~~I~~~m~~al~~~~~~~-~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---------- 597 (723)
T 3cdi_A 529 LNQAKGARLHILGVMEQAINAPRGDI-SEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---------- 597 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhc-cccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC----------
Confidence 34556666666666666554431111 1112234567899999999999999999999999999998753
Q ss_pred cccCCceEEEecC-HHHHHHHHHHHHHHHh
Q 006943 188 AMEFDNFVLISGE-SEAVKKALFAISAIMY 216 (624)
Q Consensus 188 ~~~~~r~V~I~G~-~~~V~~A~~~I~~~l~ 216 (624)
+..|.|.+. .+.+.+|..+|..++.
T Consensus 598 ----dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 598 ----DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ------------------------------
T ss_pred ----CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 455777765 5677788877766653
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.47 E-value=0.0059 Score=68.56 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCcccCCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccCCCCCCCCcc
Q 006943 108 LCAAQDALLKVHAAIANAVANATDNDKKRKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPKDASEPTHSC 187 (624)
Q Consensus 108 ~~~a~~ai~~v~~~i~~~~~~~~~~~~~~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~ 187 (624)
+..|.++...+++.+.+.+... .... ..-.....+.||....+.+||++|++|+.|.+++|+.|.|..
T Consensus 568 L~~A~~~~~~I~~~m~~al~~~-~~~~-~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---------- 635 (757)
T 1e3p_A 568 LKQARDARLHILDVMMEAIDTP-DEMS-PNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---------- 635 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSC-CCCC-TTSCBCCCC------------------CTTCCCCCSCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHhccc-cccc-ccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC----------
Confidence 4456677777777766666543 2111 111223357899999999999999999999999999998853
Q ss_pred cccCCceEEEecC-HHHHHHHHHHHHHHH
Q 006943 188 AMEFDNFVLISGE-SEAVKKALFAISAIM 215 (624)
Q Consensus 188 ~~~~~r~V~I~G~-~~~V~~A~~~I~~~l 215 (624)
+..|.|... .++..+|+..|..+.
T Consensus 636 ----dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 636 ----DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp --------CCCBSSHHHHCC---------
T ss_pred ----CceEEEecCCHHHHHHHHHHHHHhc
Confidence 455777765 566777766665543
No 83
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.14 E-value=0.013 Score=59.55 Aligned_cols=93 Identities=22% Similarity=0.300 Sum_probs=66.1
Q ss_pred CccceeeccCcchHHHHHhHh-CCeEEEcCCCCCCCceEEEEeecCCchhHHHHHHHHHHH--Hhhc-cCCCCCCcEEEE
Q 006943 317 NKIGRVIGKGGGTIKSIRQAS-GAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLL--LQTK-INDEDDDTVTIR 392 (624)
Q Consensus 317 ~~vg~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~~~er~i~I~G~~~~~~a~~~~~~~i~~--~~~~-~~~~~~~~~~~~ 392 (624)
+-+|..||++|++|+.|.++. |=+|.|-.- ++++ ...+..++.- +..- +.+ ++.....
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~-------------s~dp---~~fi~nalsPA~V~~V~~~~--~~~~~a~ 310 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY-------------DDDP---ARFVANALSPAKVVSVSVID--QTARAAR 310 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC-------------CSSH---HHHHHHHTTTSCCSEEEEEE--TTTTEEE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEc-------------CCCH---HHHHHHhcCCcceeEEEEEc--CCCcEEE
Confidence 578999999999999999999 888887321 1111 1222333220 1110 111 1245688
Q ss_pred EEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCC
Q 006943 393 LLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKG 427 (624)
Q Consensus 393 l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~ 427 (624)
+.||..+.+..|||+|.+++-..+-||.+|.|...
T Consensus 311 V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 311 VVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp EEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred EEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 99999999999999999999999999999999754
No 84
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=93.68 E-value=0.031 Score=53.64 Aligned_cols=94 Identities=23% Similarity=0.342 Sum_probs=64.1
Q ss_pred CccceeeccCcchHHHH-HhHhCCeEEEcCCCCCCCceEEEEeecCCchhHHHHHHHHHHH--Hhhc-cCCCCCCcEEEE
Q 006943 317 NKIGRVIGKGGGTIKSI-RQASGAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVLL--LQTK-INDEDDDTVTIR 392 (624)
Q Consensus 317 ~~vg~IIGk~G~~Ik~I-~~~tga~I~v~~~~~~~~er~i~I~G~~~~~~a~~~~~~~i~~--~~~~-~~~~~~~~~~~~ 392 (624)
+-+|..||++|++|+.| ++-.|=+|.|-.-.. +. ...+..++.- +..- +.++ ......
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~-------------dp---~~fi~nalsPA~V~~V~i~~~--~~~~a~ 187 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD-------------DP---ARFVANALSPAKVVSVSVIDQ--TARAAR 187 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS-------------SH---HHHHHHHTTTSCCSEEEEEET--TTTEEE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecC-------------CH---HHHHHhccCCcceEEEEEEcC--CCcEEE
Confidence 56899999999999999 555577787732111 11 1122233220 0000 1111 224678
Q ss_pred EEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCC
Q 006943 393 LLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGD 428 (624)
Q Consensus 393 l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~ 428 (624)
+.||..+.+..|||+|.+++--.+-||.+|.|....
T Consensus 188 V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 188 VVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp EEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred EEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 999999999999999999999999999999997543
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=92.93 E-value=0.083 Score=53.43 Aligned_cols=94 Identities=32% Similarity=0.401 Sum_probs=65.7
Q ss_pred cccceeccCCchHHHHHHHhc-CCeEEeeCCCCCCCceEEEEEccCCcccccccccccCCCCcccHHHHHHHHHHHHHHH
Q 006943 46 GVIGSVIGKSGKVINSIRQET-RARVKVVDPFPGAKDRVVTIYSHVKDKEDVEVDDEFNDKEPLCAAQDALLKVHAAIAN 124 (624)
Q Consensus 46 ~~~g~vIGk~G~~I~~i~~et-g~~I~v~~~~~~~~er~i~I~G~~~~~~~~~~~~~~~~~~~~~~a~~ai~~v~~~i~~ 124 (624)
+-+|+.||.+|.+|+.+.++. |=+|.|-+-. ++ ....+..
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s--------------~d-------------------------~~~fi~n 285 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWS--------------DD-------------------------PKQLIAN 285 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECC--------------SS-------------------------HHHHHHH
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecC--------------CC-------------------------HHHHHHH
Confidence 458999999999999999998 7788874321 11 1112333
Q ss_pred hhhccC-CCccc-CCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeEEEccC
Q 006943 125 AVANAT-DNDKK-RKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSIKVTPK 178 (624)
Q Consensus 125 ~~~~~~-~~~~~-~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I~i~~~ 178 (624)
++.... ..-.- ..+...+.+.||..+.+.-|||+|.+++--..-||.+|.|...
T Consensus 286 al~Pa~v~~v~~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 286 ALAPATVIEVEILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp HTCSSCCSEEEEEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred hcCccEEEEEEEEcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 332210 00000 0123567899999999999999999999999999999999753
No 86
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=89.73 E-value=0.12 Score=52.37 Aligned_cols=93 Identities=27% Similarity=0.375 Sum_probs=64.3
Q ss_pred CccceeeccCcchHHHHHhHh-CCeEEEcCCCCCCCceEEEEeecCCchhHHHHHHHHHH--HHhhccCCCCCCcEEEEE
Q 006943 317 NKIGRVIGKGGGTIKSIRQAS-GAQIDVDDTKDNRDECVITVTAIESPDDIKSMAVEAVL--LLQTKINDEDDDTVTIRL 393 (624)
Q Consensus 317 ~~vg~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~~~er~i~I~G~~~~~~a~~~~~~~i~--~~~~~~~~~~~~~~~~~l 393 (624)
+-+|+.||.+|..|+.|.++. |=+|.+-.- . +++ ...+..++. .+..-.. ..+......+
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~------------s-~d~---~~fi~nal~Pa~v~~v~~-~d~~~~~~~v 307 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKW------------S-DDP---KQLIANALAPATVIEVEI-LDKENKAARV 307 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC------------C-SSH---HHHHHHHTCSSCCSEEEE-EETTTTEEEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEec------------C-CCH---HHHHHHhcCccEEEEEEE-EcCCCCEEEE
Confidence 567999999999999999999 667776321 1 111 112233321 0000000 0122346889
Q ss_pred EecCCeeeEEEcCCCchHHHHHHhcCceEEEeC
Q 006943 394 LVSSKVIGCIIGKSGSIINEIRKRTKADVRISK 426 (624)
Q Consensus 394 ~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~ 426 (624)
.||..+.+.-|||+|.+++--..-||.+|.|..
T Consensus 308 ~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 308 LVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp EECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 999999999999999999999999999999864
No 87
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=75.81 E-value=1.1 Score=35.95 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=24.7
Q ss_pred EEEEEecCcccceeccCCchHHHHHHHhc
Q 006943 38 IYRILCPDGVIGSVIGKSGKVINSIRQET 66 (624)
Q Consensus 38 ~~~ilvp~~~~g~vIGk~G~~I~~i~~et 66 (624)
..++.|...+.|.|||++|+.|.+|+++.
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~l 64 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHHH
Confidence 36777888899999999999999998763
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=59.31 E-value=3.6 Score=36.27 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=26.0
Q ss_pred EEEEEecCCccceeeccCcchHHHHHhHhCC
Q 006943 309 VIRVLCPFNKIGRVIGKGGGTIKSIRQASGA 339 (624)
Q Consensus 309 ~~~i~vp~~~vg~IIGk~G~~Ik~I~~~tga 339 (624)
++.|.+..+..|.+|||.|.|++.|+--+..
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~ 64 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFN 64 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHH
Confidence 5667788899999999999999999876633
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=53.18 E-value=6.8 Score=34.49 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=24.6
Q ss_pred EEEEEecCcccceeccCCchHHHHHHHhcC
Q 006943 38 IYRILCPDGVIGSVIGKSGKVINSIRQETR 67 (624)
Q Consensus 38 ~~~ilvp~~~~g~vIGk~G~~I~~i~~etg 67 (624)
++.+-+..+..|.+|||.|.+++.|+--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 355556788999999999999999987664
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=47.03 E-value=7.3 Score=31.10 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=23.0
Q ss_pred EEEEEeccccccceeccCCchHHHHHHH
Q 006943 555 TLEVLVPANAVGKVIGKAGSNLANIRKI 582 (624)
Q Consensus 555 ~~~i~VP~~~vg~IIGkgG~~I~~I~~~ 582 (624)
..+|.|-...-|.|||++|..|.+|+..
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 5677777778899999999999987653
No 91
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=44.70 E-value=42 Score=31.59 Aligned_cols=57 Identities=23% Similarity=0.273 Sum_probs=45.8
Q ss_pred EEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEcCHHHHHHHHHHHH
Q 006943 556 LEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISGTPEQKRAAENLIQ 618 (624)
Q Consensus 556 ~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~Gt~e~v~~A~~lI~ 618 (624)
+-+.++...+.+++|+++..++.|.+.+++.|.+-.. .+ |-|+++......+...|.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N-----G~-IWi~~~~~~~~~~~~ai~ 194 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQN-----GL-IWVNGDRRKVSIAEEAIY 194 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTT-----SE-EEEESCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECC-----cE-EEEeCCchhHHHHHHHHH
Confidence 4578999999999999999999999999999999743 35 779998776555554443
No 92
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.79 E-value=8.5 Score=35.76 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=23.5
Q ss_pred EEEEecCcccceeccCCchHHHHHHHhc
Q 006943 39 YRILCPDGVIGSVIGKSGKVINSIRQET 66 (624)
Q Consensus 39 ~~ilvp~~~~g~vIGk~G~~I~~i~~et 66 (624)
.++.|...+-|.|||++|+.|++|+.+.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l 69 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRIL 69 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 4667777889999999999999988653
No 93
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=41.71 E-value=8.5 Score=36.40 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=24.5
Q ss_pred EEEEecCcccceeccCCchHHHHHHHhc
Q 006943 39 YRILCPDGVIGSVIGKSGKVINSIRQET 66 (624)
Q Consensus 39 ~~ilvp~~~~g~vIGk~G~~I~~i~~et 66 (624)
.++.|...+-|.|||++|..|++|+.+.
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 5777888899999999999999998764
No 94
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=40.74 E-value=11 Score=35.67 Aligned_cols=29 Identities=24% Similarity=0.111 Sum_probs=25.0
Q ss_pred EEEEEecCcccceeccCCchHHHHHHHhc
Q 006943 38 IYRILCPDGVIGSVIGKSGKVINSIRQET 66 (624)
Q Consensus 38 ~~~ilvp~~~~g~vIGk~G~~I~~i~~et 66 (624)
..++.|.....|.|||++|+.|++|+++.
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 46777888899999999999999998764
No 95
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=38.87 E-value=8.8 Score=36.06 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=25.5
Q ss_pred EEEEEecCcccceeccCCchHHHHHHHhcC
Q 006943 38 IYRILCPDGVIGSVIGKSGKVINSIRQETR 67 (624)
Q Consensus 38 ~~~ilvp~~~~g~vIGk~G~~I~~i~~etg 67 (624)
-.++.|...+-|.|||++|+.|++|+++..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l~ 74 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 367788889999999999999999987643
No 96
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=36.67 E-value=1.7e+02 Score=27.05 Aligned_cols=103 Identities=14% Similarity=0.046 Sum_probs=56.0
Q ss_pred EEEeecCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCCCCCC--
Q 006943 355 ITVTAIESPDDIKSMAVEAVLLLQTKINDEDDDTVTIRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKC-- 432 (624)
Q Consensus 355 i~I~G~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~p~~-- 432 (624)
++++|..+.+++...+.+....+++.--+.....+.++-.|-...++ -.-.+..|....+..+...++..|..
T Consensus 99 iV~TGAkS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~-----f~I~Le~la~~~~~~~~YEPE~fPGliy 173 (218)
T 3eik_A 99 MVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIK-----FSIRLEGLAYAHSNYCSYEPELFPGLIY 173 (218)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECS-----SCBCHHHHHHHSTTTEECCTTTSSSEEE
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECC-----CcCcHHHHHHhccCCcEECCccCceEEE
Confidence 77888777788877776666655542111111223333333222221 12246677665554444444332211
Q ss_pred ----------CCCCCcEEEEEee--hHHHHHHHHHHHHHHhhc
Q 006943 433 ----------ADANDELVEVVGE--VGSVRDALVQIILRLRDD 463 (624)
Q Consensus 433 ----------~~~~~~~v~I~G~--~~~v~~A~~~I~~~l~e~ 463 (624)
-.. ...|.|+|. .+.+.+|+..|...|.+.
T Consensus 174 R~~~pkvt~lIF~-SGKiviTGaks~~d~~~A~~~I~p~L~~f 215 (218)
T 3eik_A 174 RMVKPKIVLLIFV-SGKIVLTGAKVRDDIYQAFNNIYPVLIQH 215 (218)
T ss_dssp EETTTTEEEEECT-TSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred EcCCCCEEEEEeC-CCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 011 223669995 689999999999888764
No 97
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=34.67 E-value=9.4 Score=35.37 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=22.7
Q ss_pred EEEEecCcccceeccCCchHHHHHHHhc
Q 006943 39 YRILCPDGVIGSVIGKSGKVINSIRQET 66 (624)
Q Consensus 39 ~~ilvp~~~~g~vIGk~G~~I~~i~~et 66 (624)
+++.|.....|.|||++|+.|++|+++-
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l 90 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVV 90 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHH
Confidence 4556667788999999999999988653
No 98
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=34.33 E-value=10 Score=35.93 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=25.1
Q ss_pred EEEEEecCcccceeccCCchHHHHHHHhcC
Q 006943 38 IYRILCPDGVIGSVIGKSGKVINSIRQETR 67 (624)
Q Consensus 38 ~~~ilvp~~~~g~vIGk~G~~I~~i~~etg 67 (624)
..++.|...+.|.|||++|+.|++|+++..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L~ 74 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVVQ 74 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHHH
Confidence 456777888899999999999999988743
No 99
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=33.50 E-value=27 Score=32.83 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhccCCCccc-CCCceeEEEEEeccceeEEEeCCchHHHHHHHhcCCeE
Q 006943 116 LKVHAAIANAVANATDNDKK-RKEKEECQILVPSSQSANIIGKAGATIKRLRSKTRTSI 173 (624)
Q Consensus 116 ~~v~~~i~~~~~~~~~~~~~-~~~~~~~~llvp~~~~g~iIGk~G~~Ik~I~~~sga~I 173 (624)
...++.+.+.+....+-... ....-.+.+.+.....|.||||.|++++.||.-+..-+
T Consensus 67 ~~~L~~ll~~m~~~~~i~~~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 67 IEFLEQVFDAMNMAVDISVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 44555555555433221111 11123456667788899999999999999998776444
No 100
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=31.72 E-value=11 Score=35.54 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=22.8
Q ss_pred EEEEecCcccceeccCCchHHHHHHHhc
Q 006943 39 YRILCPDGVIGSVIGKSGKVINSIRQET 66 (624)
Q Consensus 39 ~~ilvp~~~~g~vIGk~G~~I~~i~~et 66 (624)
+++.|.....|.|||++|+.|++|+.+.
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~L 91 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKVV 91 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHH
Confidence 4566677788999999999999988653
No 101
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=31.69 E-value=1.2e+02 Score=28.57 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=45.6
Q ss_pred EEEEeccccccceeccCCchHHHHHHHhCCEEEEeCCCCCCCCeEEEEEc-CHHHHHHHHHHHHH
Q 006943 556 LEVLVPANAVGKVIGKAGSNLANIRKISGATIEMSDSKSSRGDRVALISG-TPEQKRAAENLIQA 619 (624)
Q Consensus 556 ~~i~VP~~~vg~IIGkgG~~I~~I~~~sGa~I~i~~~~~~~~~r~v~I~G-t~e~v~~A~~lI~~ 619 (624)
+-+.++...+.+++|++|..+..|.+.+++.|-+-.. .+ |-|++ ++..+..+...|..
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~N-----G~-IWi~~~~~~~~~~~~~ai~~ 208 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARN-----GR-IHLECPNEDLEAIAVMAIKI 208 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEETT-----TE-EEEECSCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeCC-----CE-EEEecCCHHHHHHHHHHHHH
Confidence 5578999999999999999999999999999999753 34 66875 66666655555543
No 102
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=28.51 E-value=16 Score=34.57 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=22.0
Q ss_pred EEEecCcccceeccCCchHHHHHHHhc
Q 006943 40 RILCPDGVIGSVIGKSGKVINSIRQET 66 (624)
Q Consensus 40 ~ilvp~~~~g~vIGk~G~~I~~i~~et 66 (624)
++.|.....|.|||++|+.|++|+++.
T Consensus 65 ~I~I~tarPg~vIGkkG~~I~~L~~~L 91 (239)
T 2vqe_C 65 AVTVHVAKPGVVIGRGGERIRVLREEL 91 (239)
T ss_dssp CCEEEESCGGGTSCSSSSHHHHHHHHH
T ss_pred EEEEEeCCCcceecCCchHHHHHHHHH
Confidence 455566778999999999999998763
No 103
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=27.84 E-value=3.3e+02 Score=24.32 Aligned_cols=104 Identities=15% Similarity=0.053 Sum_probs=55.5
Q ss_pred EEEeecCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCeeeEEEcCCCchHHHHHHhcCceEEEeCCCCCCCC-
Q 006943 355 ITVTAIESPDDIKSMAVEAVLLLQTKINDEDDDTVTIRLLVSSKVIGCIIGKSGSIINEIRKRTKADVRISKGDKPKCA- 433 (624)
Q Consensus 355 i~I~G~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~vp~~~~g~iIGk~G~~Ik~I~~~tga~I~i~~~~~p~~~- 433 (624)
++++|..+.+++..++......+++.--+.....+.++=.| ..+=+ +-.-.+..|....+..+...++..|..-
T Consensus 61 iv~TGaks~e~~~~a~~~i~~~L~~lg~~~~~~~~~i~NIv----as~dl-~~~I~Le~la~~~~~~~~YEPE~fPGliy 135 (180)
T 1ytb_A 61 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIV----GSCDV-KFPIRLEGLAFSHGTFSSYEPELFPGLIY 135 (180)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEE----EEEEC-SSCBCHHHHHHHTTTTEECCTTTCSSEEE
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEE----EEEEC-CCccCHHHHHHhcccceEECCccCCcEEE
Confidence 78888766777766666555544432111111222222222 11111 1234677777666655555554433211
Q ss_pred ---C-------CCCcEEEEEee--hHHHHHHHHHHHHHHhhc
Q 006943 434 ---D-------ANDELVEVVGE--VGSVRDALVQIILRLRDD 463 (624)
Q Consensus 434 ---~-------~~~~~v~I~G~--~~~v~~A~~~I~~~l~e~ 463 (624)
+ -...-|.|+|. .+.+.+|+..|...|.+.
T Consensus 136 R~~~pkv~~lIF~SGkivitGak~~~~~~~a~~~i~p~L~~~ 177 (180)
T 1ytb_A 136 RMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 177 (180)
T ss_dssp ECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred EeCCCcEEEEEecCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 0 01122669994 689999999999888663
No 104
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=25.37 E-value=29 Score=34.20 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=28.1
Q ss_pred cEEEEEeccccc-cceeccCCchHHHHH--------HHhCCEEEEe
Q 006943 554 LTLEVLVPANAV-GKVIGKAGSNLANIR--------KISGATIEMS 590 (624)
Q Consensus 554 ~~~~i~VP~~~v-g~IIGkgG~~I~~I~--------~~sGa~I~i~ 590 (624)
+...|.|..+.. +-||||+|+.|++|. +..|++|.+.
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 467788887755 899999999999664 4567776654
No 105
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.45 E-value=15 Score=34.41 Aligned_cols=28 Identities=7% Similarity=0.164 Sum_probs=22.1
Q ss_pred EEEEecCcccceeccCCchHHHHHHHhc
Q 006943 39 YRILCPDGVIGSVIGKSGKVINSIRQET 66 (624)
Q Consensus 39 ~~ilvp~~~~g~vIGk~G~~I~~i~~et 66 (624)
+++.|.....|.||||+|+.|++|+++-
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHH
Confidence 3445566778999999999999998764
No 106
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=21.15 E-value=33 Score=32.18 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=25.4
Q ss_pred EEEEecCcccceeccCCchHHHHHHHhcCCeE
Q 006943 39 YRILCPDGVIGSVIGKSGKVINSIRQETRARV 70 (624)
Q Consensus 39 ~~ilvp~~~~g~vIGk~G~~I~~i~~etg~~I 70 (624)
+.|.+.....|.+|||.|+++..|+--++..+
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 34445677899999999999999998876444
No 107
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=20.53 E-value=37 Score=32.07 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=23.0
Q ss_pred EEEEEeccccccceeccCCchHHHHHHH
Q 006943 555 TLEVLVPANAVGKVIGKAGSNLANIRKI 582 (624)
Q Consensus 555 ~~~i~VP~~~vg~IIGkgG~~I~~I~~~ 582 (624)
..+|.|-...-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4677777788899999999999987654
Done!