BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006944
(624 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 89 RTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA 148
RTPL +AA G +++++L+L E+GADVN N + T LH AA G L +VVKLLL A
Sbjct: 3 RTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGR-TPLHLAARNGHL---EVVKLLLEA 57
Query: 149 GADPNFVDAKGHHPVDVIVVPPKFQDVRLTLE 180
GAD N D G P+ + + V+L LE
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 89 RTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA 148
RTPL +AA G +++++L+L E+GADVN N + T LH AA G L +VVKLLL A
Sbjct: 36 RTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGR-TPLHLAARNGHL---EVVKLLLEA 90
Query: 149 GA 150
GA
Sbjct: 91 GA 92
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 89 RTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA 148
RTPL +AA G +++++L+L E+GADVN N + T LH AA G L +VVKLLL A
Sbjct: 3 RTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGR-TPLHLAARNGHL---EVVKLLLEA 57
Query: 149 GADPNFVDAKGHHPVDVIVVPPKFQDVRLTLE 180
GAD N D G P+ + + V+L LE
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 89 RTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA 148
RTPL +AA G +++++L+L E+GADVN N + T LH AA G L +VVKLLL A
Sbjct: 36 RTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGR-TPLHLAARNGHL---EVVKLLLEA 90
Query: 149 GADPNFVDAKGHHPVDVIVVPPKFQDVRLTLE 180
GAD N D G P+ + + V+L LE
Sbjct: 91 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 89 RTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA 148
RTPL +AA G +++++L+L E+GADVN N + T LH AA G L +VVKLLL A
Sbjct: 69 RTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGR-TPLHLAARNGHL---EVVKLLLEA 123
Query: 149 GA 150
GA
Sbjct: 124 GA 125
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 72/140 (51%), Gaps = 24/140 (17%)
Query: 45 LLELAANNDVEGFKRSIV--CDPSGVDEVG---LWYGRQKGSKQMV-------------- 85
L+E A N + + K + DP+ D G L Y + G K++V
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 86 NEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLL 145
++ RTPL AA G +I++L+LS+ GAD N +D T LH AA G ++VKLL
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSK-GADPNAK-DSDGRTPLHYAAENGH---KEIVKLL 122
Query: 146 LAAGADPNFVDAKGHHPVDV 165
L+ GADPN D+ G P+D+
Sbjct: 123 LSKGADPNTSDSDGRTPLDL 142
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 86 NEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLL 145
++ +TPL +AA G ++++L+LS+ GAD N +D T LH AA G +VVKLL
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQ-GADPNAK-DSDGKTPLHLAAENGH---KEVVKLL 122
Query: 146 LAAGADPNFVDAKGHHPVDV 165
L+ GADPN D+ G P+D+
Sbjct: 123 LSQGADPNTSDSDGRTPLDL 142
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 86 NEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLL 145
++ +TPL +AA G ++++L+LS+ GAD N +D T LH AA G +VVKLL
Sbjct: 35 SDGKTPLHLAAENGHKEVVKLLLSQ-GADPNAK-DSDGKTPLHLAAENGH---KEVVKLL 89
Query: 146 LAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEE 181
L+ GADPN D+ G P+ + + V+L L +
Sbjct: 90 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 92 LMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGAD 151
L+ AA G+ D ++ +L E+GADVN S +D T LH AA G +VVKLLL+ GAD
Sbjct: 8 LIEAAENGNKDRVKDLL-ENGADVNAS-DSDGKTPLHLAAENGH---KEVVKLLLSQGAD 62
Query: 152 PNFVDAKGHHPVDVIVVPPKFQDVRLTLEE 181
PN D+ G P+ + + V+L L +
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 35/195 (17%)
Query: 13 SPRSPHISFDESRHTNVDMNHLTVE--------TDDAFASLLELAANNDVEGFKRSI--- 61
+ RSP + E+ H VD+ H+ V+ ++D L+E A NN +E K I
Sbjct: 10 NKRSPLHAAAEAGH--VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 62 -VCDPSGVD-EVGLWYGRQKGSKQMV-----NEQR----------TPLMVAATYGSIDII 104
+ DP + L +KG ++V N Q TP++ A Y +D++
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 105 RLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVD 164
+L+LS+ G+D+N+ N+++ LH AA G VD+ ++LLAA D + V+ G P+
Sbjct: 128 KLLLSK-GSDINIR-DNEENICLHWAAFSGC---VDIAEILLAAKCDLHAVNIHGDSPLH 182
Query: 165 VIVVPPKFQDVRLTL 179
+ ++ V L L
Sbjct: 183 IAARENRYDCVVLFL 197
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 24/140 (17%)
Query: 45 LLELAANNDVEGFKRSIV--CDPSGVDEVG---LWYGRQKGSKQMV-------------- 85
L+E A N + + K I D + D G L Y ++G K++V
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 86 NEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLL 145
++ RTPL AA G +I++L++S+ GADVN +D T LH AA G ++VKLL
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISK-GADVNAK-DSDGRTPLHYAAKEGH---KEIVKLL 122
Query: 146 LAAGADPNFVDAKGHHPVDV 165
++ GAD N D+ G P+D+
Sbjct: 123 ISKGADVNTSDSDGRTPLDL 142
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL +AATYG ++I+ ++L + GADVN + ST LH AA G L ++V++LL G
Sbjct: 49 TPLHLAATYGHLEIVEVLL-KHGADVN-AIDIXGSTPLHLAALIGHL---EIVEVLLKHG 103
Query: 150 ADPNFVDAKGHHPVDVIVVPPKFQDVRLTLE 180
AD N VD G P+ + + + V + L+
Sbjct: 104 ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 89 RTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA 148
RTPL +AA G ++I+ ++L +GADVN + + +T LH AAS G L ++V++LL
Sbjct: 36 RTPLHMAAAVGHLEIVEVLL-RNGADVN-AVDTNGTTPLHLAASLGHL---EIVEVLLKY 90
Query: 149 GADPNFVDAKGHHPV 163
GAD N DA G P+
Sbjct: 91 GADVNAKDATGITPL 105
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 5/80 (6%)
Query: 86 NEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLL 145
++ RTPL AA G ++++L++S+ GADVN +D T LH AA G +VVKLL
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISK-GADVNAK-DSDGRTPLHHAAENGH---KEVVKLL 122
Query: 146 LAAGADPNFVDAKGHHPVDV 165
++ GAD N D+ G P+D+
Sbjct: 123 ISKGADVNTSDSDGRTPLDL 142
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 69 DEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKS--TA 126
DEV + N+ TPL +AA+ G ++I+ ++L ++GADVN S D + T
Sbjct: 28 DEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNAS---DLTGITP 83
Query: 127 LHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPV 163
LH AA+ G L ++V++LL GAD N D GH P+
Sbjct: 84 LHLAAATGHL---EIVEVLLKHGADVNAYDNDGHTPL 117
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL +AA G ++I+ ++L + GADVN + ND T LH AA G L ++V++LL G
Sbjct: 82 TPLHLAAATGHLEIVEVLL-KHGADVN-AYDNDGHTPLHLAAKYGHL---EIVEVLLKHG 136
Query: 150 ADPNFVDAKGHHPVDVIV 167
AD N D G D+ +
Sbjct: 137 ADVNAQDKFGKTAFDISI 154
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 86 NEQRTPLMVAATYGSIDIIRLILSESGADVN 116
N+ TPL +AA YG ++I+ ++L + GADVN
Sbjct: 111 NDGHTPLHLAAKYGHLEIVEVLL-KHGADVN 140
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL +AATYG ++I+ ++L + GADVN + ST LH AA G L ++V++LL G
Sbjct: 49 TPLHLAATYGHLEIVEVLL-KHGADVN-AIDIMGSTPLHLAALIGHL---EIVEVLLKHG 103
Query: 150 ADPNFVDAKGHHPVDVIVVPPKFQDVRLTLE 180
AD N VD G P+ + + + V + L+
Sbjct: 104 ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL +AA G ++I+ ++L ++GADVN D T LH AA G L ++V++LL AG
Sbjct: 70 TPLHLAAREGHLEIVEVLL-KAGADVNAK-DKDGYTPLHLAAREGHL---EIVEVLLKAG 124
Query: 150 ADPNFVDAKGHHPVDVIV 167
AD N D G P D+ +
Sbjct: 125 ADVNAQDKFGKTPFDLAI 142
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL +AA G ++I+ ++L ++GADVN D T LH AA G L ++V++LL AG
Sbjct: 70 TPLHLAAREGHLEIVEVLL-KAGADVNAK-DKDGYTPLHLAAREGHL---EIVEVLLKAG 124
Query: 150 ADPNFVDAKGHHPVDVIV 167
AD N D G P D+ +
Sbjct: 125 ADVNAQDKFGKTPFDLAI 142
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL +AA Y ++I+ ++L + GADVN + ND ST LH AA G L ++V++LL G
Sbjct: 49 TPLHLAADYDHLEIVEVLL-KHGADVN-AHDNDGSTPLHLAALFGHL---EIVEVLLKHG 103
Query: 150 ADPNFVDAKGHHPVDVIV 167
AD N D G D+ +
Sbjct: 104 ADVNAQDKFGKTAFDISI 121
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 87 EQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLL 146
E TPLM AA +G I ++ +L ++GAD L G + +AL A S G D+VK+LL
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLL-QNGADPQL-LGKGRESALSLACSKG---YTDIVKMLL 89
Query: 147 AAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190
G D N D G P+ V + V++ LE D ++E
Sbjct: 90 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIE 131
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 32 NHLTVETDDAFASLLELAA---------NNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSK 82
N L+V A +L LA + D EGF + G V + +
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 83 QMVNEQR-TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDV 141
Q++ + R + L +A + G DI++++L + G DVN N + L+ A G N V
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTPLLY-AVHG---NHVKC 117
Query: 142 VKLLLAAGADPNFVDAKGHHPVDVIV 167
VK+LL +GADP G++ +D+ V
Sbjct: 118 VKMLLESGADPTIETDSGYNSMDLAV 143
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 87 EQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLL 146
E TPLM AA +G I ++ +L ++GAD L G + +AL A S G D+VK+LL
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLL-QNGADPQL-LGKGRESALSLACSKG---YTDIVKMLL 105
Query: 147 AAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190
G D N D G P+ V + V++ LE D ++E
Sbjct: 106 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIE 147
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 32 NHLTVETDDAFASLLELAA---------NNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSK 82
N L+V A +L LA + D EGF + G V + +
Sbjct: 19 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 78
Query: 83 QMVNEQR-TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDV 141
Q++ + R + L +A + G DI++++L + G DVN N + L+ A G N V
Sbjct: 79 QLLGKGRESALSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTPLLY-AVHG---NHVKC 133
Query: 142 VKLLLAAGADPNFVDAKGHHPVDVIV 167
VK+LL +GADP G++ +D+ V
Sbjct: 134 VKMLLESGADPTIETDSGYNSMDLAV 159
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 87 EQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLL 146
E TPLM AA +G I ++ +L ++GAD L G + +AL A S G D+VK+LL
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLL-QNGADPQL-LGKGRESALSLACSKG---YTDIVKMLL 87
Query: 147 AAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190
G D N D G P+ V + V++ LE D ++E
Sbjct: 88 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIE 129
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 32 NHLTVETDDAFASLLELAA---------NNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSK 82
N L+V A +L LA + D EGF + G V + +
Sbjct: 1 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 60
Query: 83 QMVNEQR-TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDV 141
Q++ + R + L +A + G DI++++L + G DVN N + L+ A G N V
Sbjct: 61 QLLGKGRESALSLACSKGYTDIVKMLL-DCGVDVNEYDWNGGTPLLY-AVHG---NHVKC 115
Query: 142 VKLLLAAGADPNFVDAKGHHPVDVIV 167
VK+LL +GADP G++ +D+ V
Sbjct: 116 VKMLLESGADPTIETDSGYNSMDLAV 141
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL +AA YG ++I+ ++L ++GADVN + T LH AA G L ++V++LL G
Sbjct: 82 TPLHLAALYGHLEIVEVLL-KNGADVN-ATDTYGFTPLHLAADAGHL---EIVEVLLKYG 136
Query: 150 ADPNFVDAKGHHPVDVIV 167
AD N D G D+ +
Sbjct: 137 ADVNAQDKFGKTAFDISI 154
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 89 RTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA 148
TPL +AA G ++ + +L ++ A VN +D+ T LHCAA G N +VKLLL
Sbjct: 48 ETPLHMAARAGHTEVAKYLL-QNKAKVNAKAKDDQ-TPLHCAARIGHTN---MVKLLLEN 102
Query: 149 GADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEE 181
A+PN GH P+ + + V LE+
Sbjct: 103 NANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL VA+ YG+I +++ +L ADVN S LH AA G D+V LLL G
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYS-PLHQAAQQGH---TDIVTLLLKNG 367
Query: 150 ADPNFVDAKGHHPVDV 165
A PN V + G P+ +
Sbjct: 368 ASPNEVSSDGTTPLAI 383
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 84 MVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVK 143
M + TPL VAA YG + + L+L E A N + G + T LH A N +D+VK
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAELLL-ERDAHPN-AAGKNGLTPLHVAVHH---NNLDIVK 196
Query: 144 LLLAAGADPNFVDAKGHHPVDV 165
LLL G P+ G+ P+ +
Sbjct: 197 LLLPRGGSPHSPAWNGYTPLHI 218
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL VA + ++DI++L+L G+ S + T LH AA N V+V + LL G
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSP--HSPAWNGYTPLHIAAKQ---NQVEVARSLLQYG 235
Query: 150 ADPNFVDAKGHHPVDV 165
N +G P+ +
Sbjct: 236 GSANAESVQGVTPLHL 251
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 69 DEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALH 128
DEV + M + TPL +AA G ++I+ ++L + GADVN S + T LH
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDSWGR-TPLH 85
Query: 129 CAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIV 167
AA+ G L ++V++LL GAD N D G D+ +
Sbjct: 86 LAATVGHL---EIVEVLLEYGADVNAQDKFGKTAFDISI 121
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTAL-HCAASGGALNAVDVVKLLLAA 148
T LM AA G +++++++L E GADVN +C N AL H S + + LLL
Sbjct: 170 TALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDH 228
Query: 149 GADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEE 181
GAD N +G P+ + V V+ LE+
Sbjct: 229 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TP ++AA GS+ +++L LS+ GADVN C TA AA G + A +K L G
Sbjct: 94 TPFILAAIAGSVKLLKLFLSK-GADVN-ECDFYGFTAFMEAAVYGKVKA---LKFLYKRG 148
Query: 150 ADPNF 154
A+ N
Sbjct: 149 ANVNL 153
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 92 LMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGAD 151
L+ A +D+++ +L E GA+VN T LH A ++ D+V+LLL GAD
Sbjct: 29 LIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQ---MSREDIVELLLRHGAD 84
Query: 152 PNFVDAKGHHPVDVIVVPPKFQDVRLTL 179
P G P + + + ++L L
Sbjct: 85 PVLRKKNGATPFILAAIAGSVKLLKLFL 112
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 92 LMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGAD 151
L+ AA G D +R++++ +GADV N ST LH AA G L +VVKLLL AGAD
Sbjct: 10 LLEAARAGQDDEVRILMA-NGADVAAKDKNG-STPLHLAARNGHL---EVVKLLLEAGAD 64
Query: 152 PNFVDAKGHHPVDVIV 167
N D G D+ +
Sbjct: 65 VNAQDKFGKTAFDISI 80
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL +AA G ++I+ ++L ++GADVN + + T L AA G L ++V++LL G
Sbjct: 49 TPLHLAAFNGHLEIVEVLL-KNGADVN-AVDHAGMTPLRLAALFGHL---EIVEVLLKNG 103
Query: 150 ADPNFVDAKGHHPV 163
AD N D +GH P+
Sbjct: 104 ADVNANDMEGHTPL 117
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 75 YGRQKGSKQMVNEQR--TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAAS 132
Y Q GS V + TPL A +G + ++ L+L A VN + G + LH AA
Sbjct: 28 YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK-ALVN-TTGYQNDSPLHDAAK 85
Query: 133 GGALNAVDVVKLLLAAGADPNFVDAKGHHPVD 164
G VD+VKLLL+ GA N V+ G PVD
Sbjct: 86 NGH---VDIVKLLLSYGASRNAVNIFGLRPVD 114
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 69 DEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALH 128
DEV + M + TPL +AA G ++I+ ++L + GADVN S + T LH
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDIWGR-TPLH 85
Query: 129 CAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIV 167
AA+ G L ++V++LL GAD N D G D+ +
Sbjct: 86 LAATVGHL---EIVEVLLEYGADVNAQDKFGKTAFDISI 121
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTAL-HCAASGGALNAVDVVKLLLAA 148
T LM AA G +++++++L E GADVN +C N AL H S + + LLL
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Query: 149 GADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEE 181
GAD N +G P+ + V V+ LE+
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TP ++AA GS+ +++L LS+ GADVN C TA AA G + A +K L G
Sbjct: 74 TPFLLAAIAGSVKLLKLFLSK-GADVN-ECDFYGFTAFMEAAVYGKVKA---LKFLYKRG 128
Query: 150 ADPNF 154
A+ N
Sbjct: 129 ANVNL 133
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 87 EQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLL 146
E L+ A +D+++ +L E GA+VN T LH A ++ D+V+LLL
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQ---MSREDIVELLL 59
Query: 147 AAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTL 179
GADP G P + + + ++L L
Sbjct: 60 RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL 92
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
T L +A+ +G + I+ L++S GADVN + TALH A L D+V LLL G
Sbjct: 119 TCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVD---LQNPDLVSLLLKCG 174
Query: 150 ADPNFVDAKGHHPVDVIVVPP----KFQDVRLTLEEL 182
AD N V +G+ P + P + Q +LTLE L
Sbjct: 175 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 76 GRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGA 135
G GSK + TPL AA G + ++ +LS+ GADVN D +T LH AA G
Sbjct: 1 GHMWGSK----DGNTPLHNAAKNGHAEEVKKLLSK-GADVNAR-SKDGNTPLHLAAKNGH 54
Query: 136 LNAVDVVKLLLAAGADPNFVDAKGHHP 162
++VKLLLA GAD N G+ P
Sbjct: 55 ---AEIVKLLLAKGADVNARSKDGNTP 78
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL +AA G +I++L+L++ GADVN D +T H A G ++VKLL A G
Sbjct: 44 TPLHLAAKNGHAEIVKLLLAK-GADVNAR-SKDGNTPEHLAKKNGHH---EIVKLLDAKG 98
Query: 150 ADPN 153
AD N
Sbjct: 99 ADVN 102
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 69 DEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALH 128
DEV + N TPL +AA G ++I+ ++L + GADV+ S T LH
Sbjct: 28 DEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLL-KHGADVDAS-DVFGYTPLH 85
Query: 129 CAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPV 163
AA G L ++V++LL GAD N +D+ G P+
Sbjct: 86 LAAYWGHL---EIVEVLLKNGADVNAMDSDGMTPL 117
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 69 DEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALH 128
DEV + + + TPL +AA G ++I+ ++L + GADVN N T LH
Sbjct: 28 DEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAE-DNFGITPLH 85
Query: 129 CAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIV 167
AA G L ++V++LL GAD N D G D+ +
Sbjct: 86 LAAIRGHL---EIVEVLLKHGADVNAQDKFGKTAFDISI 121
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
T L +A+ +G + I+ L++S GADVN + TALH A L D+V LLL G
Sbjct: 116 TCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVD---LQNPDLVSLLLKCG 171
Query: 150 ADPNFVDAKGHHPVDVIVVPP----KFQDVRLTLEEL 182
AD N V +G+ P + P + Q +LTLE L
Sbjct: 172 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 208
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 69 DEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGND--KSTA 126
DEV + M + TPL +AA G ++I+ ++L + GADVN D T
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVN---ARDIWGRTP 83
Query: 127 LHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIV 167
LH AA+ G L ++V++LL GAD N D G D+ +
Sbjct: 84 LHLAATVGHL---EIVEVLLEYGADVNAQDKFGKTAFDISI 121
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 69 DEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALH 128
DEV + + N TPL +AA G ++I+ ++L + GADV+ + T LH
Sbjct: 28 DEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLL-KHGADVD-AADVYGFTPLH 85
Query: 129 CAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPV 163
AA G L ++V++LL GAD N D G P+
Sbjct: 86 LAAMTGHL---EIVEVLLKYGADVNAFDMTGSTPL 117
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 92 LMVAATYGSIDIIRLILSESGADVNLSCGNDKS--TALHCAASGGALNAVDVVKLLLAAG 149
L+ AA G D +R++++ +GADVN DK T LH AA L ++V++LL G
Sbjct: 18 LLEAARAGQDDEVRILMA-NGADVN---AEDKVGLTPLHLAAMNDHL---EIVEVLLKNG 70
Query: 150 ADPNFVDAKGHHPVDVIVVPPKFQDVRLTLE 180
AD N +DA G P+ ++ + + V + L+
Sbjct: 71 ADVNAIDAIGETPLHLVAMYGHLEIVEVLLK 101
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVN 116
TPL + A YG ++I+ ++L + GADVN
Sbjct: 82 TPLHLVAMYGHLEIVEVLL-KHGADVN 107
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 92 LMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGAD 151
L+ AA G D +R++++ +GADV N ST LH AA G L +VVKLLL AGAD
Sbjct: 28 LLEAARAGQDDEVRILMA-NGADVAAKDKNG-STPLHLAARNGHL---EVVKLLLEAGAD 82
Query: 152 PNFVDAKGHHPVDVIV 167
D G D+ +
Sbjct: 83 VXAQDKFGKTAFDISI 98
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 18/142 (12%)
Query: 53 DVEGFKRSIVCDPSGVDEVGLW-YGRQKGSKQMVNEQ--RTPLMVAATYGSIDIIRLILS 109
D+EG + + + +G + V + Y Q G+ ++ PL A +YG ++ L++
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV- 99
Query: 110 ESGADVNLSCGND--KSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIV 167
+ GA VN++ D K T LH AA+ G ++ KLLL GADP + G+ P+D++
Sbjct: 100 KHGAVVNVA---DLWKFTPLHEAAAKGKY---EICKLLLQHGADPTKKNRDGNTPLDLV- 152
Query: 168 VPPKFQDVRLTLEELLATDGSV 189
+D +++LL D ++
Sbjct: 153 -----KDGDTDIQDLLRGDAAL 169
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNL---SCGNDKSTALHCAASGGALNAVDVVKLLL 146
TPL VA + +++RL L ++GAD+N +CG T LH A A V++LLL
Sbjct: 160 TPLHVAVIHKDAEMVRL-LRDAGADLNKPEPTCGR---TPLHLAVEA---QAASVLELLL 212
Query: 147 AAGADPNFVDAKGHHPVDVIVVPP 170
AGADP G P+ ++ P
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRP 236
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNL---SCGNDKSTALHCAASGGALNAVDVVKLLL 146
TPL VA + +++RL L ++GAD+N +CG T LH A A V++LLL
Sbjct: 160 TPLHVAVIHKDAEMVRL-LRDAGADLNKPEPTCGR---TPLHLAVEA---QAASVLELLL 212
Query: 147 AAGADPNFVDAKGHHPVDVIVVPP 170
AGADP G P+ ++ P
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRP 236
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 18/142 (12%)
Query: 53 DVEGFKRSIVCDPSGVDEVGLW-YGRQKGSKQMVNEQ--RTPLMVAATYGSIDIIRLILS 109
D+EG + + + +G + V + Y Q G+ ++ PL A +YG ++ L++
Sbjct: 39 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV- 97
Query: 110 ESGADVNLSCGND--KSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIV 167
+ GA VN++ D K T LH AA+ G ++ KLLL GADP + G+ P+D++
Sbjct: 98 KHGAVVNVA---DLWKFTPLHEAAAKGKY---EICKLLLQHGADPTKKNRDGNTPLDLV- 150
Query: 168 VPPKFQDVRLTLEELLATDGSV 189
+D +++LL D ++
Sbjct: 151 -----KDGDTDIQDLLRGDAAL 167
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 18/142 (12%)
Query: 53 DVEGFKRSIVCDPSGVDEVGLW-YGRQKGSKQMVNEQ--RTPLMVAATYGSIDIIRLILS 109
D+EG + + + +G + V + Y Q G+ ++ PL A +YG ++ L++
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV- 95
Query: 110 ESGADVNLSCGND--KSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIV 167
+ GA VN++ D K T LH AA+ G ++ KLLL GADP + G+ P+D++
Sbjct: 96 KHGAVVNVA---DLWKFTPLHEAAAKGKY---EICKLLLQHGADPTKKNRDGNTPLDLV- 148
Query: 168 VPPKFQDVRLTLEELLATDGSV 189
+D +++LL D ++
Sbjct: 149 -----KDGDTDIQDLLRGDAAL 165
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
PL A +YG ++ L+L + GA VN + + T LH AAS N V+V LLL+ G
Sbjct: 93 VPLHNACSYGHYEVTELLL-KHGACVN-AMDLWQFTPLHEAASK---NRVEVCSLLLSHG 147
Query: 150 ADPNFVDAKGHHPVDVIVVPPKFQDVRLTLE 180
ADP V+ G VD+ P + RLT E
Sbjct: 148 ADPTLVNCHGKSAVDMAPTPELRE--RLTYE 176
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 85 VNEQR----TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVD 140
VNE+ TPL VAA D++ +L + GA +N + + TALH AA G L
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVME-VLHKHGAKMN-ALDSLGQTALHRAALAGHLQ--- 294
Query: 141 VVKLLLAAGADPNFVDAKG 159
+LLL+ G+DP+ + +G
Sbjct: 295 TCRLLLSYGSDPSIISLQG 313
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 88 QRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLA 147
++ L+ AA G+ + + +L+ + + S G KST LH AA N V +V+LLL
Sbjct: 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGR-KSTPLHLAA---GYNRVRIVQLLLQ 79
Query: 148 AGADPNFVDAKGHHPV 163
GAD + D G P+
Sbjct: 80 HGADVHAKDKGGLVPL 95
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 92 LMVAATYGSIDIIRLILSESGADVNLSCGNDKS--TALHCAASGGALNAVDVVKLLLAAG 149
L+ AA G D +R++++ +GADVN D+ T L+ A + G L ++V++LL G
Sbjct: 18 LLEAARAGQDDEVRILMA-NGADVN---AKDEYGLTPLYLATAHGHL---EIVEVLLKNG 70
Query: 150 ADPNFVDAKGHHPV 163
AD N VDA G P+
Sbjct: 71 ADVNAVDAIGFTPL 84
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 90 TPLMVAATYG-SIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA 148
TPLM AA S+D RL+L+ + VNL K+TALH A G V+ LLL A
Sbjct: 144 TPLMWAAYRTHSVDPTRLLLTFN-VSVNLGDKYHKNTALHWAVLAGN---TTVISLLLEA 199
Query: 149 GADPNFVDAKGHHPVDV 165
GA+ + + KG +D+
Sbjct: 200 GANVDAQNIKGESALDL 216
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 84 MVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVK 143
+ E+ + L +A+T G DI+ L+L E D+N+ N + L+ A G N V V+
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL-ERDVDINIYDWNGGTPLLY-AVRG---NHVKCVE 119
Query: 144 LLLAAGADPNFVDAKGHHPVDVIV 167
LLA GAD G+ P+D+ V
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAV 143
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 84 MVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVK 143
+ E+ + L +A+T G DI+ L+L E D+N+ N + L+ A G N V V+
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL-ERDVDINIYDWNGGTPLLY-AVHG---NHVKCVE 119
Query: 144 LLLAAGADPNFVDAKGHHPVDVIV 167
LLA GAD G+ P+D+ V
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAV 143
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
+PL VAA +G D+I L+L + GA+ D++ LH A G VVK LL +
Sbjct: 88 SPLHVAALHGRADLIPLLL-KHGANAGAR-NADQAVPLHLACQQGHFQ---VVKCLLDSN 142
Query: 150 ADPNFVDAKGHHPV 163
A PN D G+ P+
Sbjct: 143 AKPNKKDLSGNTPL 156
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL +A ++ +L ESGADVN G D + LH A + ++ LL+ G
Sbjct: 136 TPLYLACENQQRACVKKLL-ESGADVNQGKGQD--SPLHAVARTAS---EELACLLMDFG 189
Query: 150 ADPNFVDAKGHHPVDVIVVPPKFQDVRLTLE 180
AD +A+G PV+ +VPP+ +L LE
Sbjct: 190 ADTQAKNAEGKRPVE--LVPPESPLAQLFLE 218
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
+P+ AA +G +R ++S+ G VN+ D + LH A GG L+ V K+LL G
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQ-GWAVNIITA-DHVSPLHEACLGGHLSCV---KILLKHG 59
Query: 150 ADPNFVDAKGHHPVDVIVVPPKFQDVRLTLE 180
A N V A H P+ V + V L L+
Sbjct: 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQ 90
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 89 RTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA 148
RT L+ A GS +RL L+E+GAD++ TALH AA G + +VV+ L+
Sbjct: 77 RTALLFVAGLGSDKCVRL-LAEAGADLDHRDMRGGLTALHMAA--GYVRP-EVVEALVEL 132
Query: 149 GADPNFVDAKG 159
GAD D +G
Sbjct: 133 GADIEVEDERG 143
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 89 RTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA 148
RT L+ A GS +RL L+E+GAD++ TALH AA G + +VV+ L+
Sbjct: 78 RTALLFVAGLGSDKCVRL-LAEAGADLDHRDMRGGLTALHMAA--GYVRP-EVVEALVEL 133
Query: 149 GADPNFVDAKG 159
GAD D +G
Sbjct: 134 GADIEVEDERG 144
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 68 VDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTAL 127
+DEV + + + + + R PL AA G ++I+ +L + GAD+N + + L
Sbjct: 15 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLL 73
Query: 128 HCAASGGALNAVDVVKLLLAAGAD 151
G V VKLLL+ GAD
Sbjct: 74 SAVYEG----HVSCVKLLLSKGAD 93
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 68 VDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTAL 127
+DEV + + + + + R PL AA G ++I+ +L + GAD+N + + L
Sbjct: 20 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLL 78
Query: 128 HCAASGGALNAVDVVKLLLAAGAD 151
G V VKLLL+ GAD
Sbjct: 79 SAVYEG----HVSCVKLLLSKGAD 98
>pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064
Protein
Length = 98
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 19/79 (24%)
Query: 288 GENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSC 347
GE ++R+ KF+ + G C R + C Y HG F C L+ + T C +G
Sbjct: 7 GELPKKRELCKFYIT---------GFCARAENCPYMHGDFPCKLY---HTTGNCINGDD- 53
Query: 348 ARRVCFFAHTP--EELRPL 364
C F+H P EE R L
Sbjct: 54 ----CMFSHDPLTEETREL 68
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 85 VNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKL 144
++ TPL +A ++ +L ESGADVN G D + LH + ++ L
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLL-ESGADVNQGKGQD--SPLHAVVR---TASEELACL 240
Query: 145 LLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLE 180
L+ GAD +A+G PV+ +VPP+ +L LE
Sbjct: 241 LMDFGADTQAKNAEGKRPVE--LVPPESPLAQLFLE 274
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
+P+ AA +G +R ++S+ G VN+ D + LH A GG L+ V K+LL G
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQ-GWAVNIITA-DHVSPLHEACLGGHLSCV---KILLKHG 115
Query: 150 ADPNFVDAKGHHPVDVIVVPPKFQDVRLTLE 180
A N V A H P+ V + V L L+
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQ 146
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
+PL +AA YG ++L +G + D+ T LH AAS G N +V++LL G
Sbjct: 36 SPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDR-TPLHMAASEGHAN---IVEVLLKHG 90
Query: 150 ADPNFVD 156
AD N D
Sbjct: 91 ADVNAKD 97
>pdb|2E5S|A Chain A, Solution Structure Of The Zf-Ccchx2 Domain Of Muscleblind-
Like 2, Isoform 1 [homo Sapiens]
Length = 98
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 306 CPDFRKGACRRGDM-CEYAHGVFECWLHPAQYRTRLCKD--GTSCARRVCFFAHTPEELR 362
C +F++G C RG+ C +AH + + +C D C R C + H P L+
Sbjct: 23 CREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQ 82
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 92 LMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASG---GALNAVDVVKLLLAA 148
L+ AA G ID ++L+L + D++ ND A G G D+VKLL+
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQ--NDFGYTALIEAVGLREGNQLYQDIVKLLMEN 167
Query: 149 GADPNFVDAKGHHPVD 164
GAD + D G +D
Sbjct: 168 GADQSIKDNSGRTAMD 183
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 43 ASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSID 102
+LLE A D + K + VDEV E TPL +A I+
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQVDEVD-------------TEGNTPLNIAVHNNDIE 53
Query: 103 IIRLILSESGADVNLSCGNDKSTALHCAASG 133
I + ++ + GAD+NL S L+ A G
Sbjct: 54 IAKALI-DRGADINLQNSISDSPYLYAGAQG 83
>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of
Nup475TTPTIS11
Length = 77
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 312 GACRRGDMCEYAHGVFECWL---HPAQYRTRLCK----DGTSCARRVCFFAHTPEE 360
G CR G C++AHG+ E HP +Y+T LC G C F H P E
Sbjct: 22 GRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76
>pdb|4II1|A Chain A, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|B Chain B, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|C Chain C, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|D Chain D, Crystal Structure Of The Zinc Finger Of Zgpat
Length = 167
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 300 HYSCVPCPDFRKGACRRGDMCEYAHG 325
H S PCP F +G CR + C ++HG
Sbjct: 73 HKSLKPCPFFLEGKCRFKENCRFSHG 98
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 131 ASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVV 168
A+ A V+ V+ LL AGADPN ++ G P+ V+++
Sbjct: 17 ATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM 54
>pdb|3TE9|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Fructose 6-Phosphate
pdb|3TE9|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Fructose 6-Phosphate
pdb|3TKF|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Sedoheptulose 7-Phosphate.
pdb|3TKF|B Chain B, 1.5 Angstrom Resolution Crystal Structure Of K135m Mutant
Of Transaldolase B (Tala) From Francisella Tularensis In
Complex With Sedoheptulose 7-Phosphate
Length = 345
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 89 RTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASG 133
R +M+AAT+ I +L L + G + NL+ DK+ A CA +G
Sbjct: 155 RVLIMIAATWEGIKAAKL-LQKEGINCNLTLIFDKAQAKACAEAG 198
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au-
Rich Element By The Tandem Zinc Finger Domain Of Tis11d
Length = 70
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 307 PDFRKGACRRGDMCEYAHGVFE---CWLHPAQYRTRLCKD----GTSCARRVCFFAHTPE 359
P G C+ G+ C++AHG E HP +Y+T LC+ G C F H +
Sbjct: 11 PFEESGTCKYGEKCQFAHGFHELRSLTRHP-KYKTELCRTFHTIGFCPYGPRCHFIHNAD 69
Query: 360 E 360
E
Sbjct: 70 E 70
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 102 DIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHH 161
+++RL+ E GAD+N + D TALH A + VD+VK L+ GA+ N D +G
Sbjct: 55 EVLRLL--ERGADINYA-NVDGLTALHQACID---DNVDMVKFLVENGANINQPDNEGWI 108
Query: 162 PV 163
P+
Sbjct: 109 PL 110
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 87 EQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLL 145
E TPL+VA+ YG +I++ +L E GAD++ T L AS +V+K+
Sbjct: 133 EGETPLIVASKYGRSEIVKKLL-ELGADISAR----DLTGLTAEASARIFGRQEVIKIF 186
>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
Length = 72
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 304 VPCPDFRKGACRRGDMCEYAH-----GVFECWLHPAQYRTRLCKDGTSCARRVCFFAHTP 358
V C + +G C++GD CE+ H + EC+ + K G C+ + C F H
Sbjct: 17 VVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYS--------KFG-ECSNKECPFLHID 67
Query: 359 EE 360
E
Sbjct: 68 PE 69
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL +AA++G DI++ +L + AD+N + + LH A G V + L+A G
Sbjct: 74 TPLHLAASHGHRDIVQKLL-QYKADIN-AVNEHGNVPLHYACFWG---QDQVAEDLVANG 128
Query: 150 ADPNFVDAKGHHPVDVIVVPPK 171
A + + G PVD P +
Sbjct: 129 ALVSICNKYGEMPVDKAKAPLR 150
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 90 TPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG 149
TPL +AA++G DI++ +L + AD+N + + LH A G V + L+A G
Sbjct: 69 TPLHLAASHGHRDIVQKLL-QYKADIN-AVNEHGNVPLHYACFWG---QDQVAEDLVANG 123
Query: 150 ADPNFVDAKGHHPVDVIVVP 169
A + + G PVD P
Sbjct: 124 ALVSICNKYGEMPVDKAKAP 143
>pdb|3D2N|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 1 And 2
Domain
Length = 83
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 266 FKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAH 324
F+ CSR TEC F HP ++ + + R + C D KG C R + C+Y H
Sbjct: 15 FQRGTCSRPD----TECKFAHPSKSCQVENGR-----VIACFDSLKGRCSR-ENCKYLH 63
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 131 ASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVV 168
A+ A V+ V+ LL AGA+PN ++ G P+ V+++
Sbjct: 17 ATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM 54
>pdb|2RPP|A Chain A, Solution Structure Of Tandem Zinc Finger Domain 12 In
Muscleblind-Like Protein 2
Length = 89
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 306 CPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDGTS--CARRVCFFAHTPEELR 362
C F++G C R D C++AH C + R C D C+R C + H P L+
Sbjct: 20 CRQFQRGTCSRSDEECKFAHPPKSCQVENG--RVIACFDSLKGRCSRENCKYLHPPTHLK 77
Query: 363 P-LYVSTG 369
L +++G
Sbjct: 78 TQLEINSG 85
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 90 TPLMVAA--TYGSIDIIRLILSE-SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLL 146
+P+M+ A T + D I +L ++N TAL A S G VDVVK LL
Sbjct: 147 SPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGR---VDVVKALL 203
Query: 147 AAGADPNFVDAKG 159
A AD N D G
Sbjct: 204 ACEADVNVQDDDG 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,905,574
Number of Sequences: 62578
Number of extensions: 636178
Number of successful extensions: 1636
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1535
Number of HSP's gapped (non-prelim): 128
length of query: 624
length of database: 14,973,337
effective HSP length: 105
effective length of query: 519
effective length of database: 8,402,647
effective search space: 4360973793
effective search space used: 4360973793
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)