Query 006944
Match_columns 624
No_of_seqs 563 out of 2350
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:05:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 99.9 3.7E-27 1.3E-31 225.2 17.6 143 43-215 6-148 (169)
2 4gpm_A Engineered protein OR26 99.9 2.5E-26 8.5E-31 219.4 15.4 138 30-190 26-163 (169)
3 4b93_B Ankyrin repeat domain-c 99.9 3E-26 1E-30 233.8 15.1 156 29-214 74-229 (269)
4 2rfa_A Transient receptor pote 99.9 1.4E-25 4.7E-30 219.7 17.2 170 31-215 27-209 (232)
5 2rfm_A Putative ankyrin repeat 99.9 6.7E-26 2.3E-30 216.6 13.6 152 34-215 28-179 (192)
6 3hra_A Ankyrin repeat family p 99.9 3.3E-25 1.1E-29 211.9 17.7 158 33-215 31-190 (201)
7 1oy3_D Transcription factor in 99.9 4.9E-25 1.7E-29 220.5 16.9 166 33-214 37-269 (282)
8 3v31_A Ankyrin repeat family A 99.9 3.1E-25 1.1E-29 207.0 14.3 146 40-215 2-147 (167)
9 2y1l_E Darpin-8.4; hydrolase-i 99.9 8E-25 2.7E-29 205.6 17.1 150 36-215 9-158 (169)
10 3twr_A Tankyrase-2; ankyrin re 99.9 5.5E-25 1.9E-29 204.9 15.5 148 36-212 3-150 (165)
11 1yyh_A HN1;, notch 1, ankyrin 99.9 5.4E-25 1.9E-29 219.9 16.0 163 36-215 52-235 (253)
12 1awc_B Protein (GA binding pro 99.9 8E-25 2.7E-29 202.0 15.1 145 40-215 1-145 (153)
13 3f6q_A Integrin-linked protein 99.9 7.1E-25 2.4E-29 207.5 14.8 147 39-214 3-149 (179)
14 1k1a_A B-cell lymphoma 3-encod 99.9 1E-24 3.5E-29 213.6 16.2 169 30-214 35-227 (241)
15 2f8y_A Notch homolog 1, transl 99.9 2.7E-24 9.2E-29 208.9 18.5 162 37-215 21-203 (223)
16 1d9s_A Cyclin-dependent kinase 99.9 4.1E-25 1.4E-29 200.6 11.6 133 32-188 3-136 (136)
17 3v30_A DNA-binding protein rfx 99.9 1.1E-24 3.6E-29 204.4 14.6 146 41-215 2-147 (172)
18 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.1E-24 3.9E-29 201.5 14.0 146 39-215 3-149 (162)
19 3b7b_A Euchromatic histone-lys 99.9 2.3E-24 8E-29 211.3 16.6 165 34-214 4-188 (237)
20 4b93_B Ankyrin repeat domain-c 99.9 1.6E-24 5.3E-29 221.1 15.6 162 36-214 6-196 (269)
21 2rfa_A Transient receptor pote 99.9 2.6E-24 9E-29 210.6 16.6 147 40-215 2-166 (232)
22 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.1E-24 1.1E-28 197.7 15.9 144 41-215 2-145 (156)
23 1oy3_D Transcription factor in 99.9 1.3E-24 4.5E-29 217.4 14.4 164 34-214 2-236 (282)
24 3b7b_A Euchromatic histone-lys 99.9 4.2E-24 1.4E-28 209.4 17.6 169 30-215 33-222 (237)
25 1ikn_D Protein (I-kappa-B-alph 99.9 1.6E-24 5.6E-29 213.3 14.6 153 33-215 37-196 (236)
26 3aji_A 26S proteasome non-ATPa 99.9 4.8E-24 1.6E-28 208.2 17.3 153 33-215 32-184 (231)
27 3aji_A 26S proteasome non-ATPa 99.9 3.1E-24 1.1E-28 209.6 15.5 155 30-214 62-216 (231)
28 2xai_A ASB-9, ankyrin repeat a 99.9 4.2E-24 1.4E-28 214.7 16.4 152 31-214 26-177 (261)
29 2etb_A Transient receptor pote 99.9 7.9E-25 2.7E-29 218.2 10.9 177 31-215 29-233 (256)
30 1s70_B 130 kDa myosin-binding 99.9 4.7E-24 1.6E-28 216.3 15.7 147 38-214 37-243 (299)
31 2dzn_A Probable 26S proteasome 99.9 6.1E-24 2.1E-28 206.7 15.8 153 34-213 29-184 (228)
32 2vge_A RELA-associated inhibit 99.9 1.8E-24 6.1E-29 215.4 12.1 138 30-190 10-150 (229)
33 1bi7_B P16INK4A, MTS1, multipl 99.9 1.2E-24 4.1E-29 202.1 10.1 143 35-208 6-149 (156)
34 4hbd_A KN motif and ankyrin re 99.9 3.8E-24 1.3E-28 218.1 14.3 152 34-215 104-262 (276)
35 3jxi_A Vanilloid receptor-rela 99.9 1.9E-24 6.7E-29 215.5 11.1 170 38-215 43-237 (260)
36 3ljn_A Hypothetical protein; a 99.9 4.9E-24 1.7E-28 223.6 14.0 167 32-215 44-256 (364)
37 1sw6_A Regulatory protein SWI6 99.9 2.9E-24 1E-28 224.2 12.2 156 30-214 119-327 (327)
38 1yyh_A HN1;, notch 1, ankyrin 99.9 2.6E-24 9E-29 215.0 11.2 153 33-214 2-168 (253)
39 2dzn_A Probable 26S proteasome 99.9 1.9E-23 6.5E-28 203.2 16.6 152 33-214 63-219 (228)
40 1k1a_A B-cell lymphoma 3-encod 99.9 2E-23 6.7E-28 204.5 16.7 165 34-214 2-194 (241)
41 3f6q_A Integrin-linked protein 99.9 2.8E-23 9.4E-28 196.6 16.3 137 31-190 29-165 (179)
42 3utm_A Tankyrase-1; tankyrase, 99.9 3.8E-23 1.3E-27 212.5 18.6 103 31-152 48-150 (351)
43 3d9h_A CDNA FLJ77766, highly s 99.9 2.2E-23 7.5E-28 213.0 16.6 164 32-214 50-233 (285)
44 2pnn_A Transient receptor pote 99.9 4.1E-24 1.4E-28 215.4 10.9 172 36-215 49-245 (273)
45 2xai_A ASB-9, ankyrin repeat a 99.9 2E-23 6.8E-28 209.8 15.9 145 40-215 2-146 (261)
46 3d9h_A CDNA FLJ77766, highly s 99.9 2.7E-23 9.2E-28 212.3 16.9 129 69-214 73-201 (285)
47 3v30_A DNA-binding protein rfx 99.9 7.9E-24 2.7E-28 198.4 11.9 135 33-190 28-162 (172)
48 2jab_A H10-2-G3; HER2, darpin, 99.9 1.9E-23 6.6E-28 189.5 13.9 128 36-186 9-136 (136)
49 2fo1_E LIN-12 protein; beta-ba 99.9 2.7E-23 9.2E-28 220.5 16.4 170 30-215 155-358 (373)
50 1s70_B 130 kDa myosin-binding 99.9 3.4E-23 1.1E-27 210.0 15.6 153 30-214 62-276 (299)
51 3ljn_A Hypothetical protein; a 99.9 2E-23 6.7E-28 218.9 14.3 154 32-215 11-223 (364)
52 3hra_A Ankyrin repeat family p 99.9 5.7E-23 2E-27 196.3 16.2 148 39-215 3-152 (201)
53 1wdy_A 2-5A-dependent ribonucl 99.9 1.5E-22 5.2E-27 201.5 19.2 171 33-215 30-231 (285)
54 1n11_A Ankyrin; clathrin, BAND 99.9 5.3E-23 1.8E-27 220.6 16.8 167 32-215 203-389 (437)
55 4g8k_A 2-5A-dependent ribonucl 99.9 8.3E-23 2.8E-27 212.0 17.7 173 31-215 48-251 (337)
56 3c5r_A BARD-1, BRCA1-associate 99.9 2E-23 7E-28 189.0 11.5 129 36-187 5-133 (137)
57 2y1l_E Darpin-8.4; hydrolase-i 99.9 6.7E-23 2.3E-27 192.4 15.4 134 30-186 36-169 (169)
58 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.2E-23 1.8E-27 181.1 13.6 126 40-188 1-126 (126)
59 1ihb_A P18-INK4C(INK6), cyclin 99.9 3.5E-23 1.2E-27 191.4 12.8 135 30-188 27-162 (162)
60 3t8k_A Uncharacterized protein 99.9 1.8E-23 6.3E-28 202.4 11.1 151 41-215 6-166 (186)
61 1n11_A Ankyrin; clathrin, BAND 99.9 5.9E-23 2E-27 220.3 15.6 153 33-215 6-158 (437)
62 3kea_A K1L; tropism, ANK repea 99.9 1.9E-23 6.4E-28 213.8 11.0 133 32-189 22-155 (285)
63 3twr_A Tankyrase-2; ankyrin re 99.9 8.2E-23 2.8E-27 190.2 14.3 132 32-187 33-164 (165)
64 3utm_A Tankyrase-1; tankyrase, 99.9 2E-22 6.9E-27 207.1 16.8 159 30-214 80-291 (351)
65 1wdy_A 2-5A-dependent ribonucl 99.9 2.4E-22 8.2E-27 200.1 16.3 155 39-215 3-160 (285)
66 2etb_A Transient receptor pote 99.9 5.9E-23 2E-27 204.6 11.8 149 41-214 2-183 (256)
67 3aaa_C Myotrophin, protein V-1 99.9 1.7E-22 5.9E-27 179.8 13.4 119 38-179 4-122 (123)
68 1ycs_B 53BP2, P53BP2; ankyrin 99.9 4.6E-23 1.6E-27 205.1 10.7 160 32-215 29-193 (239)
69 3v31_A Ankyrin repeat family A 99.9 3.4E-22 1.2E-26 186.3 15.9 134 31-187 26-159 (167)
70 3eu9_A Huntingtin-interacting 99.9 3.6E-22 1.2E-26 194.2 16.1 153 34-215 2-154 (240)
71 1ycs_B 53BP2, P53BP2; ankyrin 99.9 4.2E-23 1.4E-27 205.3 9.6 145 39-214 3-150 (239)
72 2rfm_A Putative ankyrin repeat 99.9 1.8E-22 6.2E-27 192.7 13.0 133 31-186 58-190 (192)
73 2pnn_A Transient receptor pote 99.9 7.1E-23 2.4E-27 206.2 10.4 156 35-215 7-196 (273)
74 3eu9_A Huntingtin-interacting 99.9 4.9E-22 1.7E-26 193.3 15.9 157 30-214 31-188 (240)
75 3ehr_A Osteoclast-stimulating 99.9 7.5E-23 2.6E-27 200.2 9.9 132 37-190 69-200 (222)
76 1ikn_D Protein (I-kappa-B-alph 99.9 4.2E-22 1.4E-26 196.0 14.9 163 28-212 65-228 (236)
77 1awc_B Protein (GA binding pro 99.9 4.3E-22 1.5E-26 183.6 13.9 123 37-182 30-152 (153)
78 4g8k_A 2-5A-dependent ribonucl 99.9 3.2E-22 1.1E-26 207.5 13.8 161 33-215 160-325 (337)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.2E-22 1.4E-26 183.4 12.4 127 33-184 28-154 (156)
80 2f8y_A Notch homolog 1, transl 99.9 1.2E-21 4.1E-26 190.2 16.3 151 31-190 48-218 (223)
81 2b0o_E UPLC1; arfgap, structur 99.9 5.9E-22 2E-26 205.7 13.3 149 37-215 147-298 (301)
82 2fo1_E LIN-12 protein; beta-ba 99.9 3.1E-22 1.1E-26 212.4 11.3 165 32-215 115-291 (373)
83 3t8k_A Uncharacterized protein 99.9 5E-22 1.7E-26 192.3 9.9 137 34-186 30-181 (186)
84 3jxi_A Vanilloid receptor-rela 99.9 6.8E-22 2.3E-26 197.0 10.4 153 38-215 2-188 (260)
85 3deo_A Signal recognition part 99.9 3.1E-21 1.1E-25 183.9 13.1 113 37-168 40-152 (183)
86 1d9s_A Cyclin-dependent kinase 99.8 5E-21 1.7E-25 173.5 11.1 117 82-215 6-123 (136)
87 3ui2_A Signal recognition part 99.8 8.1E-21 2.8E-25 190.1 12.9 132 38-188 42-185 (244)
88 3c5r_A BARD-1, BRCA1-associate 99.8 7.8E-21 2.7E-25 171.9 11.3 115 84-214 6-120 (137)
89 4hbd_A KN motif and ankyrin re 99.8 6.3E-21 2.2E-25 194.3 10.6 132 32-186 136-273 (276)
90 3lvq_E ARF-GAP with SH3 domain 99.8 2.3E-20 8E-25 206.2 15.8 137 37-190 128-267 (497)
91 1dcq_A PYK2-associated protein 99.8 3.6E-20 1.2E-24 190.0 14.0 137 37-190 126-265 (278)
92 3jue_A Arfgap with coiled-coil 99.8 2.4E-20 8.1E-25 199.8 12.4 157 33-214 191-348 (368)
93 3kea_A K1L; tropism, ANK repea 99.8 8.4E-21 2.9E-25 194.0 8.4 145 39-214 60-206 (285)
94 3aaa_C Myotrophin, protein V-1 99.8 4.2E-20 1.4E-24 164.3 10.2 113 85-213 4-116 (123)
95 2jab_A H10-2-G3; HER2, darpin, 99.8 5E-20 1.7E-24 166.9 10.6 115 85-215 11-125 (136)
96 2l6b_A NR1C; ankyrin, consensu 99.8 2.9E-20 9.9E-25 163.2 8.3 109 36-163 4-112 (115)
97 1sw6_A Regulatory protein SWI6 99.8 7.4E-21 2.5E-25 198.4 4.8 182 26-215 37-295 (327)
98 2vge_A RELA-associated inhibit 99.8 8.2E-20 2.8E-24 181.6 12.0 131 57-214 1-134 (229)
99 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.1E-19 3.9E-24 154.1 11.0 93 87-188 1-93 (93)
100 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.6E-19 5.3E-24 153.3 11.5 93 40-151 1-93 (93)
101 1n0r_A 4ANK, 4 ankyrin repeats 99.8 3.4E-19 1.1E-23 156.6 12.4 113 87-215 1-113 (126)
102 1bi7_B P16INK4A, MTS1, multipl 99.8 1.6E-19 5.6E-24 167.3 9.2 115 84-215 8-123 (156)
103 3ehr_A Osteoclast-stimulating 99.8 2.1E-19 7.3E-24 175.5 8.1 116 83-214 68-184 (222)
104 2l6b_A NR1C; ankyrin, consensu 99.8 4.2E-19 1.4E-23 155.7 8.3 99 83-190 4-102 (115)
105 3deo_A Signal recognition part 99.8 2.6E-19 9E-24 170.5 7.0 116 83-215 39-155 (183)
106 3ui2_A Signal recognition part 99.7 2E-18 7E-23 172.6 7.9 114 85-215 42-156 (244)
107 2b0o_E UPLC1; arfgap, structur 99.7 1.9E-18 6.6E-23 179.3 7.7 110 37-171 186-298 (301)
108 2aja_A Ankyrin repeat family p 99.7 1E-19 3.4E-24 195.3 -2.2 130 37-187 88-223 (376)
109 2zgd_A 3 repeat synthetic anky 99.7 5.8E-17 2E-21 142.2 9.0 93 81-182 17-109 (110)
110 3lvq_E ARF-GAP with SH3 domain 99.7 7.9E-17 2.7E-21 177.9 11.6 106 38-168 168-276 (497)
111 1dcq_A PYK2-associated protein 99.7 1.5E-16 5.2E-21 163.0 11.1 99 34-151 162-263 (278)
112 2zgd_A 3 repeat synthetic anky 99.7 2.2E-16 7.7E-21 138.4 10.6 94 33-145 16-109 (110)
113 3jue_A Arfgap with coiled-coil 99.7 1.8E-16 6E-21 169.7 11.4 113 87-215 198-313 (368)
114 2aja_A Ankyrin repeat family p 99.6 5E-18 1.7E-22 182.1 -3.8 127 36-190 123-252 (376)
115 1m9o_A Tristetraproline; Cys3H 99.4 6.3E-14 2.1E-18 117.1 2.0 61 299-360 8-76 (77)
116 3d2q_A Muscleblind-like protei 99.0 5E-11 1.7E-15 98.0 -0.9 62 302-363 5-69 (70)
117 1m9o_A Tristetraproline; Cys3H 98.6 1E-08 3.5E-13 85.2 2.9 62 266-328 10-76 (77)
118 2cqe_A KIAA1064 protein; CCCH 98.6 2.9E-08 1E-12 86.7 4.5 49 300-360 10-62 (98)
119 2e5s_A Otthump00000018578; ZF- 98.5 5E-09 1.7E-13 91.6 -2.6 63 301-363 18-83 (98)
120 2d9m_A Zinc finger CCCH-type d 98.5 8.8E-09 3E-13 83.5 -1.9 50 291-343 11-63 (69)
121 2d9n_A Cleavage and polyadenyl 98.4 4.9E-08 1.7E-12 81.5 2.1 58 298-362 5-65 (77)
122 2rhk_C Cleavage and polyadenyl 98.2 1.3E-07 4.4E-12 78.0 -0.1 56 300-362 13-71 (72)
123 3d2n_A Muscleblind-like protei 98.1 7.3E-07 2.5E-11 75.5 1.2 63 300-364 6-71 (83)
124 2d9m_A Zinc finger CCCH-type d 97.8 2.4E-06 8.1E-11 69.3 -0.7 36 329-364 10-49 (69)
125 2rpp_A Muscleblind-like protei 97.8 3.5E-06 1.2E-10 72.2 -0.1 62 300-363 14-78 (89)
126 2cqe_A KIAA1064 protein; CCCH 97.5 4.6E-05 1.6E-09 66.4 3.3 47 266-327 11-61 (98)
127 2d9n_A Cleavage and polyadenyl 97.4 4.7E-05 1.6E-09 63.4 1.9 61 266-344 8-72 (77)
128 3d2q_A Muscleblind-like protei 97.3 4.4E-05 1.5E-09 62.4 0.9 54 273-330 14-68 (70)
129 2e5s_A Otthump00000018578; ZF- 96.8 0.00022 7.4E-09 62.2 0.2 60 267-330 19-82 (98)
130 2rhk_C Cleavage and polyadenyl 96.4 0.00065 2.2E-08 55.8 0.8 53 266-329 14-70 (72)
131 2lhn_A Nuclear polyadenylated 94.4 0.0026 8.9E-08 53.2 0.0 64 269-360 10-74 (80)
132 3d2n_A Muscleblind-like protei 95.1 0.0062 2.1E-07 51.3 1.4 57 267-329 8-68 (83)
133 2lhn_A Nuclear polyadenylated 93.0 0.01 3.4E-07 49.7 0.0 42 303-357 9-50 (80)
134 2rpp_A Muscleblind-like protei 93.4 0.017 5.9E-07 49.2 0.5 50 273-328 25-75 (89)
135 2fc6_A Nuclear, target of EGR1 89.1 0.075 2.6E-06 40.1 0.0 27 301-327 18-45 (50)
136 2fc6_A Nuclear, target of EGR1 85.1 0.28 9.6E-06 37.0 1.2 24 336-359 18-45 (50)
137 3u1l_A PRE-mRNA-splicing facto 77.8 0.37 1.3E-05 48.2 -0.6 24 303-326 70-93 (240)
138 3v33_A Ribonuclease ZC3H12A; r 66.7 1.4 4.8E-05 43.5 0.5 32 292-325 181-212 (223)
139 3u9g_A Zinc finger CCCH-type a 65.9 3.3 0.00011 40.9 3.0 45 300-360 148-199 (229)
140 4g26_A Pentatricopeptide repea 24.4 1.2E+02 0.004 32.8 7.0 130 40-190 62-209 (501)
141 3v33_A Ribonuclease ZC3H12A; r 22.5 18 0.00063 35.6 0.0 23 337-359 191-214 (223)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=3.7e-27 Score=225.19 Aligned_cols=143 Identities=34% Similarity=0.501 Sum_probs=135.5
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCC
Q 006944 43 ASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGND 122 (624)
Q Consensus 43 TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~ 122 (624)
+.|+.||..|++++|+.||+ .|+|+|.+ |.+|+||||+|+..|+.+++++||+. |+|++.+ +.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~-------------d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~-d~~ 69 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE-NGADVNAS-------------DSDGRTPLHHAAENGHKEVVKLLISK-GADVNAK-DSD 69 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTT
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhh-ccC
Confidence 57999999999999999999 99999987 68999999999999999999999998 9999999 999
Q ss_pred CChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCC
Q 006944 123 KSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNS 202 (624)
Q Consensus 123 G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~ 202 (624)
|+||||+|+..|+ .++|++||++|+|+|.+|.+|+||||+|+. .+..+++++|++.|++++ ..+..
T Consensus 70 g~TpLh~A~~~g~---~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~gad~~-------~~d~~ 135 (169)
T 4gpm_A 70 GRTPLHHAAENGH---KEVVKLLISKGADVNAKDSDGRTPLHHAAE----NGHKEVVKLLISKGADVN-------TSDSD 135 (169)
T ss_dssp SCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------CCCTT
T ss_pred CCCHHHHHHHcCC---HHHHHHHHHCcCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc-------ccCCC
Confidence 9999999999999 999999999999999999999999999999 455678999999999998 78899
Q ss_pred CCChhhhhhhcCC
Q 006944 203 NSPPLSPALENGS 215 (624)
Q Consensus 203 g~TpL~lAle~Gs 215 (624)
|.|||++|++.|.
T Consensus 136 G~TpL~~A~~~g~ 148 (169)
T 4gpm_A 136 GRTPLDLAREHGN 148 (169)
T ss_dssp SCCHHHHHHHTTC
T ss_pred CCCHHHHHHHcCC
Confidence 9999999999984
No 2
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.94 E-value=2.5e-26 Score=219.43 Aligned_cols=138 Identities=33% Similarity=0.431 Sum_probs=126.1
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHH
Q 006944 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILS 109 (624)
Q Consensus 30 ~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe 109 (624)
..-+++.+|.+|.||||.|+..++.++++.||+ .|++++.. |.+|+||||+||..|+.++|++||+
T Consensus 26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~-------------d~~g~TpLh~A~~~g~~~~v~~Ll~ 91 (169)
T 4gpm_A 26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAK-------------DSDGRTPLHHAAENGHKEVVKLLIS 91 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhh-------------ccCCCCHHHHHHHcCCHHHHHHHHH
Confidence 445788999999999999999999999999999 99999987 6899999999999999999999999
Q ss_pred hcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCC
Q 006944 110 ESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSV 189 (624)
Q Consensus 110 ~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv 189 (624)
+ |+|||.+ +.+|+||||+|+..|+ .++|++||++|+|++.+|..|+||||+|+. .+..+++++|+++|+++
T Consensus 92 ~-gadvn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~----~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 92 K-GADVNAK-DSDGRTPLHHAAENGH---KEVVKLLISKGADVNTSDSDGRTPLDLARE----HGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp T-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHTC----
T ss_pred C-cCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCc
Confidence 9 9999999 9999999999999999 999999999999999999999999999999 55678999999999998
Q ss_pred c
Q 006944 190 E 190 (624)
Q Consensus 190 ~ 190 (624)
+
T Consensus 163 e 163 (169)
T 4gpm_A 163 E 163 (169)
T ss_dssp -
T ss_pred C
Confidence 7
No 3
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.93 E-value=3e-26 Score=233.77 Aligned_cols=156 Identities=22% Similarity=0.273 Sum_probs=145.5
Q ss_pred ccCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHH
Q 006944 29 VDMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLIL 108 (624)
Q Consensus 29 ~~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLL 108 (624)
...-+++..|.+|.||||+||..|+.++|+.||+ .|++++.. +.+|.||||+|+..++.+++++||
T Consensus 74 ~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~~a~~~~~-------------~~~g~t~l~~a~~~~~~~~~~~Ll 139 (269)
T 4b93_B 74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGAR-------------NADQAVPLHLACQQGHFQVVKCLL 139 (269)
T ss_dssp -CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCcCcc-------------CCCCCCccccccccChHHHHHHHH
Confidence 3445788999999999999999999999999999 89998877 689999999999999999999999
Q ss_pred HhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCC
Q 006944 109 SESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGS 188 (624)
Q Consensus 109 e~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gad 188 (624)
+. |+++|.+ +..|+||||+|+..|+ .++|++||++|+|+|.+|..|+||||+|+. .+..+++++|++.|++
T Consensus 140 ~~-g~~~n~~-d~~g~TpL~~A~~~g~---~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~Gad 210 (269)
T 4b93_B 140 DS-NAKPNKK-DLSGNTPLIYACSGGH---HELVALLLQHGASINASNNKGNTALHEAVI----EKHVFVVELLLLHGAS 210 (269)
T ss_dssp HT-TCCSCCC-CTTCCCHHHHHHHTTC---GGGHHHHHHTTCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHTTCC
T ss_pred HC-CCCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHHCCCCCCccccCCCcHHHHHHH----cCCHHHHHHHHHCCCC
Confidence 99 9999999 9999999999999999 999999999999999999999999999999 4556789999999999
Q ss_pred CcccccccccccCCCCChhhhhhhcC
Q 006944 189 VERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 189 v~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
++ ..+..|.|||++|+++|
T Consensus 211 ~~-------~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 211 VQ-------VLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp SC-------CCCTTSCCSGGGSCTTC
T ss_pred CC-------CcCCCCCCHHHHHHhCC
Confidence 98 78899999999998877
No 4
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.93 E-value=1.4e-25 Score=219.72 Aligned_cols=170 Identities=19% Similarity=0.216 Sum_probs=148.9
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006944 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~ 110 (624)
..+++..+.+|.||||.||..|+.++|+.||+ .|+++... ..+..|.+|.||||+|+..|+.++|++||++
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 97 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLME-AAPELVFE--------PMTSELYEGQTALHIAVINQNVNLVRALLAR 97 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGC--------CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCchhccc--------cccccCCCCcCHHHHHHHcCCHHHHHHHHhC
Confidence 45688889999999999999999999999999 77775332 1233478999999999999999999999999
Q ss_pred cCCCccccCCC-------------CCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHH
Q 006944 111 SGADVNLSCGN-------------DKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRL 177 (624)
Q Consensus 111 ~GADVN~~~d~-------------~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~ 177 (624)
|++++.. +. .|.||||+|+..|+ .++|++|+++|+|++.+|..|+||||+|+..++.+....
T Consensus 98 -g~~~~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~ 172 (232)
T 2rfa_A 98 -GASVSAR-ATGSVFHYRPHNLIYYGEHPLSFAACVGS---EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQ 172 (232)
T ss_dssp -TCCTTCC-CCSGGGSCCTTCSCCCCSSHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHH
T ss_pred -CCCCCcc-cCCcceeecccccccCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHH
Confidence 9999987 54 79999999999999 999999999999999999999999999999998888888
Q ss_pred HHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 178 TLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 178 lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
++++|++.|++... ..+....+..|.|||++|++.|.
T Consensus 173 i~~~Ll~~g~~~~~-~~~~~~~~~~g~tpl~~A~~~g~ 209 (232)
T 2rfa_A 173 MYNLLLSYDGGDHL-KSLELVPNNQGLTPFKLAGVEGN 209 (232)
T ss_dssp HHHHHHHTTCSCSS-CCGGGCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHhcCCchhh-hhhhccCCCCCCCHHHHHHHcCC
Confidence 99999999998741 12223678899999999999994
No 5
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=6.7e-26 Score=216.62 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=142.6
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCC
Q 006944 34 LTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGA 113 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GA 113 (624)
++.+|..|.|+||.||..|+.++|+.|++ .|++++.. |..|.||||+|+..|+.++|++|+++ |+
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~ 92 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVE-NFDKLEDK-------------DIEGSTALIWAVKNNRLGIAEKLLSK-GS 92 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHH-HHCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-TC
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHH-hccccccc-------------cccCccHHHHHHHcCCHHHHHHHHHC-CC
Confidence 46689999999999999999999999999 78888876 68899999999999999999999999 99
Q ss_pred CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccc
Q 006944 114 DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNL 193 (624)
Q Consensus 114 DVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~ 193 (624)
+++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+. .+..+++++|++.|++++
T Consensus 93 ~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~--- 161 (192)
T 2rfm_A 93 NVNTK-DFSGKTPLMWSIIFGY---SEMSYFLLEHGANVNDRNLEGETPLIVASK----YGRSEIVKKLLELGADIS--- 161 (192)
T ss_dssp CTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCTT---
T ss_pred CCCCC-CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC---
Confidence 99999 9999999999999999 999999999999999999999999999998 566789999999999988
Q ss_pred cccccccCCCCChhhhhhhcCC
Q 006944 194 RVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 194 ~l~~a~~~~g~TpL~lAle~Gs 215 (624)
..+..|.|||++|+..|.
T Consensus 162 ----~~~~~g~t~l~~A~~~~~ 179 (192)
T 2rfm_A 162 ----ARDLTGLTAEASARIFGR 179 (192)
T ss_dssp ----CBCTTSCBHHHHHHHTTC
T ss_pred ----CcCCCCCCHHHHHHHhCc
Confidence 778899999999999884
No 6
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.93 E-value=3.3e-25 Score=211.90 Aligned_cols=158 Identities=23% Similarity=0.227 Sum_probs=147.1
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006944 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~G 112 (624)
+++..+.+|.||||.|+..|+.++|+.||+ .|++++.. +..|.||||+|+..|+.+++++|++..+
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 96 (201)
T 3hra_A 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQ-------------NSISDSPYLYAGAQGRTEILAYMLKHAT 96 (201)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 788889999999999999999999999999 89999887 6899999999999999999999997768
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCC-CCCCCcCCCCCcHHHHHhcCCC-hhhHHHHHHHHHHCCCCCc
Q 006944 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG-ADPNFVDAKGHHPVDVIVVPPK-FQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 113 ADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~G-AD~n~~D~~G~TPLhlAa~~g~-~~~~~~lLe~LL~~gadv~ 190 (624)
++++.. +..|.||||+|+..|+ .++|++|++.| ++++.+|..|+||||+|+..+. ..+..+++++|++.|++++
T Consensus 97 ~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 97 PDLNKH-NRYGGNALIPAAEKGH---IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp CCTTCC-CTTSCCSHHHHHHTTC---HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred cccccc-cCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 999998 9999999999999999 99999999999 9999999999999999998655 4556899999999999998
Q ss_pred ccccccccccCCCCChhhhhhhcCC
Q 006944 191 RNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 191 ~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
..+..|.|||++|++.|.
T Consensus 173 -------~~~~~g~t~l~~A~~~~~ 190 (201)
T 3hra_A 173 -------IKDNSGRTAMDYANQKGY 190 (201)
T ss_dssp -------CCCTTSCCHHHHHHHHTC
T ss_pred -------ccCCCCCCHHHHHHHcCC
Confidence 778899999999999984
No 7
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.92 E-value=4.9e-25 Score=220.52 Aligned_cols=166 Identities=22% Similarity=0.236 Sum_probs=115.7
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccc--------------
Q 006944 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQ-------------- 78 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~r~-------------- 78 (624)
.++..+..|.||||+||..|+.++|+.||+ .|++++..+ +++..+
T Consensus 37 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 115 (282)
T 1oy3_D 37 YLDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115 (282)
T ss_dssp GGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------
T ss_pred cccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhc
Confidence 377888899999999999999999999998 899988653 111111
Q ss_pred ---------------------------------cCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCCh
Q 006944 79 ---------------------------------KGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKST 125 (624)
Q Consensus 79 ---------------------------------~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~T 125 (624)
.+.+..+..|.||||+|+..|+.++|++||++ |++++...+..|.|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t 194 (282)
T 1oy3_D 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRT 194 (282)
T ss_dssp ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCC
T ss_pred ccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcC
Confidence 12445667788888888888888888888877 78888772244888
Q ss_pred HHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCC
Q 006944 126 ALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSP 205 (624)
Q Consensus 126 pLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~T 205 (624)
|||+|+..|+ .++|++||++|+|++.+|..|+||||+|+. .+..+++++|+++|++++ ..+..|.|
T Consensus 195 pL~~A~~~~~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~-------~~~~~g~t 260 (282)
T 1oy3_D 195 PLHLAVEAQA---ASVLELLLKAGADPTARMYGGRTPLGSALL----RPNPILARLLRAHGAPEP-------EDGGDKLS 260 (282)
T ss_dssp HHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHT----SSCHHHHHHHHHTTCCCC-------CCC-----
T ss_pred HHHHHHHcCC---HHHHHHHHHcCCCCcccccCCCCHHHHHHH----cCCcHHHHHHHHcCCCcC-------cCCCcccc
Confidence 8888888887 888888888888888888888888888887 445567777888888777 67777888
Q ss_pred hhhhhhhcC
Q 006944 206 PLSPALENG 214 (624)
Q Consensus 206 pL~lAle~G 214 (624)
||++|....
T Consensus 261 pl~~a~~~~ 269 (282)
T 1oy3_D 261 PCSSSGSDS 269 (282)
T ss_dssp ---------
T ss_pred cccccCCcc
Confidence 888776554
No 8
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.92 E-value=3.1e-25 Score=207.05 Aligned_cols=146 Identities=29% Similarity=0.358 Sum_probs=136.8
Q ss_pred cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccC
Q 006944 40 DAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSC 119 (624)
Q Consensus 40 dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~ 119 (624)
+|.|+||.||..|++++|+.|++ .+.++|.. |..|.||||+|+..|+.++|++||++ |++++..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~- 65 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIE-QENVINHT-------------DEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLL- 65 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHH-HSSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCcchHHHHHHCCCHHHHHHHHH-cCCCcCCC-------------CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCc-
Confidence 57899999999999999999999 78888877 68999999999999999999999999 9999998
Q ss_pred CCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccc
Q 006944 120 GNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTT 199 (624)
Q Consensus 120 d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~ 199 (624)
+..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|++.|++++ ..
T Consensus 66 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~-------~~ 131 (167)
T 3v31_A 66 GKGRESALSLACSKGY---TDIVKMLLDCGVDVNEYDWNGGTPLLYAVH----GNHVKCVKMLLESGADPT-------IE 131 (167)
T ss_dssp CTTCCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------CC
T ss_pred CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCcCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC-------Cc
Confidence 9999999999999999 999999999999999999999999999998 456678999999999988 67
Q ss_pred cCCCCChhhhhhhcCC
Q 006944 200 SNSNSPPLSPALENGS 215 (624)
Q Consensus 200 ~~~g~TpL~lAle~Gs 215 (624)
+..|.|||++|+..|.
T Consensus 132 ~~~g~t~l~~A~~~~~ 147 (167)
T 3v31_A 132 TDSGYNSMDLAVALGY 147 (167)
T ss_dssp CTTSCCHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHcCc
Confidence 8899999999999984
No 9
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.92 E-value=8e-25 Score=205.58 Aligned_cols=150 Identities=27% Similarity=0.370 Sum_probs=137.3
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCc
Q 006944 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADV 115 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADV 115 (624)
.....+.++|++||..|++++|+.|++ .|+++|.. |..|.||||+|+..|+.++|++||++ |+++
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~ 73 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMA-NGADVNAE-------------DASGWTPLHLAAFNGHLEIVEVLLKN-GADV 73 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence 345567899999999999999999999 89999877 68999999999999999999999999 9999
Q ss_pred cccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccc
Q 006944 116 NLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRV 195 (624)
Q Consensus 116 N~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l 195 (624)
+.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+. .+..+++++|++.|++++
T Consensus 74 ~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~----- 140 (169)
T 2y1l_E 74 NAV-DHAGMTPLRLAALFGH---LEIVEVLLKNGADVNANDMEGHTPLHLAAM----FGHLEIVEVLLKNGADVN----- 140 (169)
T ss_dssp TCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT-----
T ss_pred Ccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC-----
Confidence 999 9999999999999999 999999999999999999999999999999 455678999999999988
Q ss_pred cccccCCCCChhhhhhhcCC
Q 006944 196 STTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 196 ~~a~~~~g~TpL~lAle~Gs 215 (624)
..+..|.|||++|++.|.
T Consensus 141 --~~~~~g~t~l~~A~~~~~ 158 (169)
T 2y1l_E 141 --AQDKFGKTAFDISIDNGN 158 (169)
T ss_dssp --CCCTTSCCHHHHHHHTTC
T ss_pred --CcCCCCCCHHHHHHHhCC
Confidence 778899999999999984
No 10
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=5.5e-25 Score=204.94 Aligned_cols=148 Identities=26% Similarity=0.337 Sum_probs=134.6
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCc
Q 006944 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADV 115 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADV 115 (624)
+.+.++.++||.|+..|+++.|+.|++..+.+++.. +..|.||||+|+..|+.++|++||++ |+++
T Consensus 3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~ 68 (165)
T 3twr_A 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-------------EGRQSTPLHFAAGYNRVSVVEYLLQH-GADV 68 (165)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-------------TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-------------ccCCCCHHHHHHHcChHHHHHHHHhc-CCCC
Confidence 457889999999999999999999999666666655 67899999999999999999999999 9999
Q ss_pred cccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccc
Q 006944 116 NLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRV 195 (624)
Q Consensus 116 N~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l 195 (624)
+.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|++.|++++
T Consensus 69 ~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~----- 135 (165)
T 3twr_A 69 HAK-DKGGLVPLHNACSYGH---YEVAELLVKHGAVVNVADLWKFTPLHEAAA----KGKYEICKLLLQHGADPT----- 135 (165)
T ss_dssp TCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT-----
T ss_pred Ccc-CCCCCCHHHHHHHcCc---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCc-----
Confidence 999 9999999999999999 999999999999999999999999999999 456678999999999988
Q ss_pred cccccCCCCChhhhhhh
Q 006944 196 STTTSNSNSPPLSPALE 212 (624)
Q Consensus 196 ~~a~~~~g~TpL~lAle 212 (624)
..+..|.|||++|.+
T Consensus 136 --~~~~~g~t~l~~a~~ 150 (165)
T 3twr_A 136 --KKNRDGNTPLDLVKD 150 (165)
T ss_dssp --CCCTTSCCTGGGSCT
T ss_pred --ccCCCCCChhHhHhc
Confidence 788899999999876
No 11
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.92 E-value=5.4e-25 Score=219.94 Aligned_cols=163 Identities=20% Similarity=0.208 Sum_probs=134.8
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------ccccccc-CCccccCCCCchHHH
Q 006944 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQK-GSKQMVNEQRTPLMV 94 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~r~~-~~~~~D~~G~TPLhl 94 (624)
..+.+|.|+||.||..|+.++|+.||+ .|++++..+ +++..+. +.+..+.+|.||||+
T Consensus 52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~ 130 (253)
T 1yyh_A 52 QTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 130 (253)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHH
Confidence 457899999999999999999999999 899988764 2233333 566777888888888
Q ss_pred HHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhh
Q 006944 95 AATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQD 174 (624)
Q Consensus 95 AA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~ 174 (624)
|+..|+.++|++||+. |+++|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+
T Consensus 131 A~~~~~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~----~~ 201 (253)
T 1yyh_A 131 AARLAVEGMLEDLINS-HADVNAV-DDLGKSALHWAAAVNN---VDAAVVLLKNGANKDMQNNREETPLFLAAR----EG 201 (253)
T ss_dssp HHHHTCSSHHHHHHHT-TCCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----HT
T ss_pred HHHcChHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----CC
Confidence 8888888888888887 8888888 8888888888888888 888888888888888888888888888887 55
Q ss_pred HHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 175 VRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 175 ~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
..+++++|++.|++++ ..+..|.||+++|+++|.
T Consensus 202 ~~~~v~~Ll~~ga~~~-------~~d~~g~tpl~~A~~~g~ 235 (253)
T 1yyh_A 202 SYETAKVLLDHFANRD-------ITDHMDRLPRDIAQERMH 235 (253)
T ss_dssp CHHHHHHHHHTTCCTT-------CCCTTCCCHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCCcc-------ccccCCCCHHHHHHHcCC
Confidence 5678888888888877 677788888888888884
No 12
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=8e-25 Score=201.97 Aligned_cols=145 Identities=24% Similarity=0.294 Sum_probs=134.2
Q ss_pred cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccC
Q 006944 40 DAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSC 119 (624)
Q Consensus 40 dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~ 119 (624)
|..++|+.|+..|+.++|+.|++ .|.+++. +..|.||||+|+..|+.++|++|++. |++++.+
T Consensus 1 d~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~--------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~- 63 (153)
T 1awc_B 1 DLGKKLLEAARAGQDDEVRILMA-NGAPFTT--------------DWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDAR- 63 (153)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH-HTCCCCC--------------CTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC-
T ss_pred CccHHHHHHHHcCCHHHHHHHHH-cCCCCCc--------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-
Confidence 35689999999999999999999 7777663 57899999999999999999999998 9999998
Q ss_pred CCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccc
Q 006944 120 GNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTT 199 (624)
Q Consensus 120 d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~ 199 (624)
+..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|++.|++++ ..
T Consensus 64 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~-------~~ 129 (153)
T 1awc_B 64 TKVDRTPLHMAASEGH---ANIVEVLLKHGADVNAKDMLKMTALHWATE----HNHQEVVELLIKYGADVH-------TQ 129 (153)
T ss_dssp CTTCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------CC
T ss_pred CCCCCCHHHHHHHcCh---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc-------cc
Confidence 9999999999999999 999999999999999999999999999999 455688999999999988 77
Q ss_pred cCCCCChhhhhhhcCC
Q 006944 200 SNSNSPPLSPALENGS 215 (624)
Q Consensus 200 ~~~g~TpL~lAle~Gs 215 (624)
+..|.|||++|+..|.
T Consensus 130 ~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 130 SKFCKTAFDISIDNGN 145 (153)
T ss_dssp CTTSCCHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHcCC
Confidence 8899999999999984
No 13
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=7.1e-25 Score=207.52 Aligned_cols=147 Identities=20% Similarity=0.266 Sum_probs=133.0
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcccc
Q 006944 39 DDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLS 118 (624)
Q Consensus 39 ~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~ 118 (624)
.++.++||.||..|++++|+.||+..+.+++.. |..|.||||+||..|+.++|++||++ |++++.+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~ 68 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-------------DDHGFSPLHWACREGRSAVVEMLIMR-GARINVM 68 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCc
Confidence 467889999999999999999999768888876 68999999999999999999999999 9999998
Q ss_pred CCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccccccccc
Q 006944 119 CGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTT 198 (624)
Q Consensus 119 ~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a 198 (624)
+..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+.. +..+++++|++.|++++ .
T Consensus 69 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~-------~ 133 (179)
T 3f6q_A 69 -NRGDDTPLHLAASHGH---RDIVQKLLQYKADINAVNEHGNVPLHYACFW----GQDQVAEDLVANGALVS-------I 133 (179)
T ss_dssp -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCSS-------B
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCcc-------h
Confidence 9999999999999999 9999999999999999999999999999984 45678999999999988 7
Q ss_pred ccCCCCChhhhhhhcC
Q 006944 199 TSNSNSPPLSPALENG 214 (624)
Q Consensus 199 ~~~~g~TpL~lAle~G 214 (624)
.+..|.|||++|+..+
T Consensus 134 ~~~~g~tpl~~A~~~~ 149 (179)
T 3f6q_A 134 CNKYGEMPVDKAKAPL 149 (179)
T ss_dssp CCTTSCCGGGGSCHHH
T ss_pred hccCCCCcHHHHHHHH
Confidence 7889999999998776
No 14
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.92 E-value=1e-24 Score=213.60 Aligned_cols=169 Identities=15% Similarity=0.124 Sum_probs=106.9
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------ccccccc----CCcccc
Q 006944 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQK----GSKQMV 85 (624)
Q Consensus 30 ~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~r~~----~~~~~D 85 (624)
...+++..+..|.||||.|+..|+.++++.|++ .|++++..+ +++..+. +.+..+
T Consensus 35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 113 (241)
T 1k1a_A 35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113 (241)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCC
T ss_pred cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccC
Confidence 345677888889999999999999999999998 888887653 1122222 344455
Q ss_pred CCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHH
Q 006944 86 NEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDV 165 (624)
Q Consensus 86 ~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhl 165 (624)
..|.||||+|+..|+.+++++|+++ |++++...+..|.||||+|+..|+ .++|++|+++|+|++.+|..|+||||+
T Consensus 114 ~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 189 (241)
T 1k1a_A 114 YDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNS---LSMVQLLLQHGANVNAQMYSGSSALHS 189 (241)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 5566666666666666666666655 566665511556666666666666 666666666666666666666666666
Q ss_pred HhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006944 166 IVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 166 Aa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
|+. .+..+++++|++.|++++ ..+..|.|||++|++.|
T Consensus 190 A~~----~~~~~~v~~Ll~~ga~~~-------~~~~~g~tpl~~A~~~~ 227 (241)
T 1k1a_A 190 ASG----RGLLPLVRTLVRSGADSS-------LKNCHNDTPLMVARSRR 227 (241)
T ss_dssp HHH----HTCHHHHHHHHHTTCCTT-------CCCTTSCCTTTTCSSHH
T ss_pred HHH----cCCHHHHHHHHhcCCCCC-------CcCCCCCCHHHHHHhcC
Confidence 665 334455556666666555 45555666666665554
No 15
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.92 E-value=2.7e-24 Score=208.88 Aligned_cols=162 Identities=20% Similarity=0.212 Sum_probs=120.9
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------ccccccc-CCccccCCCCchHHHH
Q 006944 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQK-GSKQMVNEQRTPLMVA 95 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~r~~-~~~~~D~~G~TPLhlA 95 (624)
.+.+|.|+||.||..|+.++|+.|++ .|++++..+ +++..+. +.+..+..|.||||+|
T Consensus 21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 99 (223)
T 2f8y_A 21 TDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 99 (223)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHH
T ss_pred cCCCCCchHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHH
Confidence 47889999999999999999999998 788887653 1222222 4455567777777777
Q ss_pred HhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhH
Q 006944 96 ATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDV 175 (624)
Q Consensus 96 A~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~ 175 (624)
+..|+.+++++|+++ |++++.. +..|.||||+|+..|+ .++|++|++.|++++.+|..|+||||+|+. .+.
T Consensus 100 ~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~ 170 (223)
T 2f8y_A 100 ARLAVEGMLEDLINS-HADVNAV-DDLGKSALHWAAAVNN---VDAAVVLLKNGANKDMQNNREETPLFLAAR----EGS 170 (223)
T ss_dssp HHHTCHHHHHHHHHT-TCCTTCB-CTTSCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH----HTC
T ss_pred HHhCcHHHHHHHHHc-CCCCcCc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCcCHHHHHHH----cCC
Confidence 777777777777776 7777777 7777777777777777 777777777777777777777777777777 455
Q ss_pred HHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 176 RLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 176 ~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
.+++++|++.|++++ ..+..|.|||++|++.|.
T Consensus 171 ~~~v~~Ll~~ga~~~-------~~~~~g~t~l~~A~~~~~ 203 (223)
T 2f8y_A 171 YETAKVLLDHFANRD-------ITDHMDRLPRDIAQERMH 203 (223)
T ss_dssp HHHHHHHHHTTCCTT-------CCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCc-------cccccCCCHHHHHHHhcc
Confidence 567777777777776 566677777777777763
No 16
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=4.1e-25 Score=200.56 Aligned_cols=133 Identities=27% Similarity=0.308 Sum_probs=124.7
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhc
Q 006944 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSES 111 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~ 111 (624)
.+++..+..|.|+||.|+..|+.++|+.||+ .|+++|.. |..|+||||+|+. |+.++|++||++
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~-~~~~~v~~Ll~~- 66 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNAL-------------NRFGRRPIQVMMM-GSAQVAELLLLH- 66 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCTTTTTSTT-SCHHHHHHHHHH-
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCc-------------CCCCCCHHHHHHc-CCHHHHHHHHHC-
Confidence 4678899999999999999999999999999 89999887 6899999999999 999999999999
Q ss_pred CCCccccCCCC-CChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCC
Q 006944 112 GADVNLSCGND-KSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGS 188 (624)
Q Consensus 112 GADVN~~~d~~-G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gad 188 (624)
|+++|.+ +.. |.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|+++|++
T Consensus 67 g~~~~~~-~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~----~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 67 GAEPNCA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVCDAWGRLPVDLAEE----QGHRDIARYLHAATGD 136 (136)
T ss_dssp TCCSSCC-BTTTTBCHHHHHHHHTC---HHHHHHHHHTCCCCCCCSSSSSCHHHHHHH----HTCHHHHHHHHHHHCC
T ss_pred CCCCCCc-CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCC
Confidence 9999999 888 9999999999999 999999999999999999999999999998 5667888999988875
No 17
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.92 E-value=1.1e-24 Score=204.37 Aligned_cols=146 Identities=29% Similarity=0.412 Sum_probs=132.6
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCC
Q 006944 41 AFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCG 120 (624)
Q Consensus 41 g~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d 120 (624)
+.++||.||..|+++.|+.||+..+.+++.. |..|.||||+|+..|+.++|++||++ |++++.+ +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~ 66 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-------------DERGFTPLIWASAFGEIETVRFLLEW-GADPHIL-A 66 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCC-C
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhh-c
Confidence 4689999999999999999999433336665 68999999999999999999999999 9999999 9
Q ss_pred CCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccccccccccc
Q 006944 121 NDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTS 200 (624)
Q Consensus 121 ~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~ 200 (624)
..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|++.|++++ ..+
T Consensus 67 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~-------~~~ 132 (172)
T 3v30_A 67 KERESALSLASTGGY---TDIVGLLLERDVDINIYDWNGGTPLLYAVR----GNHVKCVEALLARGADLT-------TEA 132 (172)
T ss_dssp TTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------CCC
T ss_pred ccCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc-------ccC
Confidence 999999999999999 999999999999999999999999999998 456778999999999988 778
Q ss_pred CCCCChhhhhhhcCC
Q 006944 201 NSNSPPLSPALENGS 215 (624)
Q Consensus 201 ~~g~TpL~lAle~Gs 215 (624)
..|.|||++|+..|.
T Consensus 133 ~~g~t~l~~A~~~~~ 147 (172)
T 3v30_A 133 DSGYTPMDLAVALGY 147 (172)
T ss_dssp TTSCCHHHHHHHHTC
T ss_pred CCCCCHHHHHHHhCc
Confidence 899999999999984
No 18
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.92 E-value=1.1e-24 Score=201.52 Aligned_cols=146 Identities=24% Similarity=0.258 Sum_probs=133.8
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcccc
Q 006944 39 DDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLS 118 (624)
Q Consensus 39 ~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~ 118 (624)
+...|+||.|+..|++++|+.||+ .|+++|.. |..|+||||+|+. |+.++|++|+++ |++++.+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~ 66 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQ-NNVNVNAQ-------------NGFGRTALQVMKL-GNPEIARRLLLR-GANPDLK 66 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCC-------------CTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCC
T ss_pred chHhhHHHHHHHcCCHHHHHHHHh-CCCCcccc-------------CccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCC
Confidence 456799999999999999999998 89998877 6899999999999 999999999999 9999999
Q ss_pred CCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCC-cccccccc
Q 006944 119 CGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSV-ERNLRVST 197 (624)
Q Consensus 119 ~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv-~~~~~l~~ 197 (624)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+. .+..+++++|++.|++. +
T Consensus 67 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~------- 131 (162)
T 1ihb_A 67 -DRTGFAVIHDAARAGF---LDTLQTLLEFQADVNIEDNEGNLPLHLAAK----EGHLRVVEFLVKHTASNVG------- 131 (162)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHSCCCTT-------
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHccCCCCC-------
Confidence 9999999999999999 999999999999999999999999999998 45567899999999874 5
Q ss_pred cccCCCCChhhhhhhcCC
Q 006944 198 TTSNSNSPPLSPALENGS 215 (624)
Q Consensus 198 a~~~~g~TpL~lAle~Gs 215 (624)
..+..|.|||++|+..|.
T Consensus 132 ~~~~~g~t~l~~A~~~~~ 149 (162)
T 1ihb_A 132 HRNHKGDTACDLARLYGR 149 (162)
T ss_dssp CCCTTSCCHHHHHHHTTC
T ss_pred CcCCCCCcHHHHHHHcCC
Confidence 677889999999999884
No 19
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.92 E-value=2.3e-24 Score=211.28 Aligned_cols=165 Identities=22% Similarity=0.214 Sum_probs=105.1
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccccCCccccCCCCchHH
Q 006944 34 LTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQKGSKQMVNEQRTPLM 93 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~r~~~~~~~D~~G~TPLh 93 (624)
++.++.+|.|+||.||..|+.++|++|++ .|++++..+ +++..+.+.+..+..|.||||
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHH-cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 44455555555555555555555555555 455544432 223334444445667777777
Q ss_pred HHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChh
Q 006944 94 VAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQ 173 (624)
Q Consensus 94 lAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~ 173 (624)
+|+..|+.+++++|++.+.++++.. +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+. .
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~----~ 154 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQ-DDGGWTPMIWATEYKH---VDLVKLLLSKGSDINIRDNEENICLHWAAF----S 154 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----H
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccC-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCccCCCCCCHHHHHHH----C
Confidence 7777777777777777633677766 6677777777777777 777777777777777777777777777776 4
Q ss_pred hHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006944 174 DVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 174 ~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
+..+++++|++.|++++ ..+..|.|||++|++.|
T Consensus 155 ~~~~~~~~Ll~~g~~~~-------~~~~~g~t~L~~A~~~~ 188 (237)
T 3b7b_A 155 GCVDIAEILLAAKCDLH-------AVNIHGDSPLHIAAREN 188 (237)
T ss_dssp CCHHHHHHHHTTTCCTT-------CCCTTCCCHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCCC-------CcCCCCCCHHHHHHHhC
Confidence 44566777777777666 45566677777666554
No 20
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=221.12 Aligned_cols=162 Identities=25% Similarity=0.300 Sum_probs=138.6
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCC--------cc---------------------cccccccccCCccccC
Q 006944 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGV--------DE---------------------VGLWYGRQKGSKQMVN 86 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~Gadv--------N~---------------------~~l~~~r~~~~~~~D~ 86 (624)
.+|..+.++|+.||..|++++|+.||+ .|.+. +. ..++...+.+++..|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~-~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLE-WTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHT-CC----------------------------------------CCCCTTCCCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHH-CCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence 457778899999999999999999998 55432 11 1134556778888999
Q ss_pred CCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 006944 87 EQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVI 166 (624)
Q Consensus 87 ~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlA 166 (624)
+|+||||+||..|+.++|++||+. |++++.. +.+|.||||+|+..++ .+++++|++.|++++.+|..|+||||+|
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~-~~~g~t~l~~a~~~~~---~~~~~~Ll~~g~~~n~~d~~g~TpL~~A 159 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKH-GANAGAR-NADQAVPLHLACQQGH---FQVVKCLLDSNAKPNKKDLSGNTPLIYA 159 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhc-CCCcCcc-CCCCCCccccccccCh---HHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999998 9999999 9999999999999999 9999999999999999999999999999
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006944 167 VVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 167 a~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
+..|+ .+++++|++.|++++ ..+..|.||||+|+..|
T Consensus 160 ~~~g~----~~~v~~Ll~~gadvn-------~~~~~g~t~Lh~A~~~g 196 (269)
T 4b93_B 160 CSGGH----HELVALLLQHGASIN-------ASNNKGNTALHEAVIEK 196 (269)
T ss_dssp HHTTC----GGGHHHHHHTTCCTT-------CBCTTSCBHHHHHHHTT
T ss_pred HHCCC----HHHHHHHHHCCCCCC-------ccccCCCcHHHHHHHcC
Confidence 99554 457888899999998 77888999999998876
No 21
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.92 E-value=2.6e-24 Score=210.60 Aligned_cols=147 Identities=20% Similarity=0.246 Sum_probs=135.6
Q ss_pred cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCc----
Q 006944 40 DAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADV---- 115 (624)
Q Consensus 40 dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADV---- 115 (624)
.|.||||.||..|+.++|+.||+..|+++|.. |.+|+||||+|+..|+.++|++||++ |+++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~ 67 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-------------GAMGETALHIAALYDNLEAAMVLMEA-APELVFEP 67 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-Cchhcccc
Confidence 48899999999999999999999659999987 68999999999999999999999999 8887
Q ss_pred -cccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCC-------------CCCcHHHHHhcCCChhhHHHHHHH
Q 006944 116 -NLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDA-------------KGHHPVDVIVVPPKFQDVRLTLEE 181 (624)
Q Consensus 116 -N~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~-------------~G~TPLhlAa~~g~~~~~~~lLe~ 181 (624)
+.. +..|.||||+|+..|+ .++|++|+++|++++..+. .|+||||+|+. .+..+++++
T Consensus 68 ~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~ 139 (232)
T 2rfa_A 68 MTSE-LYEGQTALHIAVINQN---VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC----VGSEEIVRL 139 (232)
T ss_dssp CCST-TTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHH----HTCHHHHHH
T ss_pred cccc-CCCCcCHHHHHHHcCC---HHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHH----cCCHHHHHH
Confidence 555 7789999999999999 9999999999999999876 79999999998 566789999
Q ss_pred HHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 182 LLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 182 LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
|++.|++++ ..+..|.||||+|+..|.
T Consensus 140 Ll~~ga~~~-------~~d~~g~t~L~~A~~~~~ 166 (232)
T 2rfa_A 140 LIEHGADIR-------AQDSLGNTVLHILILQPN 166 (232)
T ss_dssp HHHTTCCTT-------CCCTTSCCHHHHHHTCSC
T ss_pred HHHCCCCCC-------CCCCCCCCHHHHHHHcCC
Confidence 999999998 788999999999999884
No 22
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=3.1e-24 Score=197.70 Aligned_cols=144 Identities=28% Similarity=0.359 Sum_probs=132.9
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCC
Q 006944 41 AFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCG 120 (624)
Q Consensus 41 g~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d 120 (624)
+.|+||.||..|+.+.|+.||+..+.+++.. |..|.||||+ |..|+.++|++|+++ |++++.+ +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~-~ 65 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-------------NRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQ-D 65 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-------------CTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCC-C
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-------------CCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCc-C
Confidence 5799999999999999999999645677776 6889999999 999999999999999 9999999 9
Q ss_pred CCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccccccccccc
Q 006944 121 NDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTS 200 (624)
Q Consensus 121 ~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~ 200 (624)
..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|++. ++++ ..+
T Consensus 66 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~-~~~~-------~~~ 130 (156)
T 1bd8_A 66 TSGTSPVHDAARTGF---LDTLKVLVEHGADVNVPDGTGALPIHLAVQ----EGHTAVVSFLAAE-SDLH-------RRD 130 (156)
T ss_dssp TTSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHH----HTCHHHHHHHHTT-SCTT-------CCC
T ss_pred CCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHH----hChHHHHHHHHhc-cCCC-------CcC
Confidence 999999999999999 999999999999999999999999999998 5667888999988 7777 678
Q ss_pred CCCCChhhhhhhcCC
Q 006944 201 NSNSPPLSPALENGS 215 (624)
Q Consensus 201 ~~g~TpL~lAle~Gs 215 (624)
..|.|||++|++.|.
T Consensus 131 ~~g~t~l~~A~~~~~ 145 (156)
T 1bd8_A 131 ARGLTPLELALQRGA 145 (156)
T ss_dssp TTSCCHHHHHHHSCC
T ss_pred CCCCCHHHHHHHcCc
Confidence 899999999999984
No 23
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.91 E-value=1.3e-24 Score=217.42 Aligned_cols=164 Identities=21% Similarity=0.210 Sum_probs=113.8
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHhcCCCC---Ccccc--------------------cccccccCCccccCCCCc
Q 006944 34 LTVETDDAFASLLELAANNDVEGFKRSIVCDPSG---VDEVG--------------------LWYGRQKGSKQMVNEQRT 90 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~Gad---vN~~~--------------------l~~~r~~~~~~~D~~G~T 90 (624)
++..|.+|.||||.||..|+.++|+.||+ .|++ +|..+ +++..+.+.+..|..|+|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 46789999999999999999999999998 7776 44432 334445555556666666
Q ss_pred hHHHHHhcCCHHHHHHHHHhcCCC-----------------------------------------------ccccCCCCC
Q 006944 91 PLMVAATYGSIDIIRLILSESGAD-----------------------------------------------VNLSCGNDK 123 (624)
Q Consensus 91 PLhlAA~~G~~dIVklLLe~~GAD-----------------------------------------------VN~~~d~~G 123 (624)
|||+|+..|+.++|++|+++ |++ ++.. +..|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g 158 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDG 158 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSS-CCSSCCCC-----------------------------------CCCGGGGTTCC-CTTS
T ss_pred HHHHHHHcCCcchhHhhhcc-CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc-CCCC
Confidence 66666666666666666654 333 4444 5566
Q ss_pred ChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCC-CCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCC
Q 006944 124 STALHCAASGGALNAVDVVKLLLAAGADPNFVDAK-GHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNS 202 (624)
Q Consensus 124 ~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~-G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~ 202 (624)
.||||+|+..|+ .++|++||++|++++..+.. |+||||+|+. .+..+++++|++.|++++ ..+..
T Consensus 159 ~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~gad~~-------~~d~~ 224 (282)
T 1oy3_D 159 HTPLHVAVIHKD---AEMVRLLRDAGADLNKPEPTCGRTPLHLAVE----AQAASVLELLLKAGADPT-------ARMYG 224 (282)
T ss_dssp CCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------CCCTT
T ss_pred cCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCcCHHHHHHH----cCCHHHHHHHHHcCCCCc-------ccccC
Confidence 677777777776 77777777777777777643 7777777776 344566777777777776 56667
Q ss_pred CCChhhhhhhcC
Q 006944 203 NSPPLSPALENG 214 (624)
Q Consensus 203 g~TpL~lAle~G 214 (624)
|.|||++|+..|
T Consensus 225 g~tpL~~A~~~~ 236 (282)
T 1oy3_D 225 GRTPLGSALLRP 236 (282)
T ss_dssp SCCHHHHHHTSS
T ss_pred CCCHHHHHHHcC
Confidence 777777776665
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.91 E-value=4.2e-24 Score=209.43 Aligned_cols=169 Identities=27% Similarity=0.386 Sum_probs=152.6
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccc-cCCccccCCC
Q 006944 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQ-KGSKQMVNEQ 88 (624)
Q Consensus 30 ~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~r~-~~~~~~D~~G 88 (624)
...+++..+.+|.|+||.|+..|+.++|+.|++ .|++++..+ +++..+ .+.+..+..|
T Consensus 33 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 111 (237)
T 3b7b_A 33 AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG 111 (237)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTS
T ss_pred cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCC
Confidence 345678889999999999999999999999999 899887654 333444 5677788999
Q ss_pred CchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhc
Q 006944 89 RTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVV 168 (624)
Q Consensus 89 ~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~ 168 (624)
.||||+|+..|+.+++++|+++ |++++.+ +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+.
T Consensus 112 ~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 186 (237)
T 3b7b_A 112 WTPMIWATEYKHVDLVKLLLSK-GSDINIR-DNEENICLHWAAFSGC---VDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHCC---HHHHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHC-CCCCCcc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 9999999999999999999998 9999998 9999999999999999 999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 169 PPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 169 ~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
.+..+++++|+++|++++ ..+..|.|||++|+.+|.
T Consensus 187 ----~~~~~~v~~Ll~~gad~~-------~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 187 ----ENRYDCVVLFLSRDSDVT-------LKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp ----TTCHHHHHHHHTTTCCTT-------CCCTTSCCHHHHSCTTCH
T ss_pred ----hCCHhHHHHHHHcCCCCC-------ccCCCCCCHHHHHHHHHH
Confidence 556678999999999998 778999999999999883
No 25
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.91 E-value=1.6e-24 Score=213.28 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=140.8
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006944 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~G 112 (624)
+++..+..|.||||.|+..|+.++|+.||+ .|++++.. |..|.||||+|+..|+.++|++|++. |
T Consensus 37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~ 101 (236)
T 1ikn_D 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELR-------------DFRGNTPLHLACEQGCLASVGVLTQS-C 101 (236)
T ss_dssp CCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHS-T
T ss_pred HhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-c
Confidence 688899999999999999999999999999 89999887 68999999999999999999999998 7
Q ss_pred CC------ccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCC-CCCcHHHHHhcCCChhhHHHHHHHHHHC
Q 006944 113 AD------VNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDA-KGHHPVDVIVVPPKFQDVRLTLEELLAT 185 (624)
Q Consensus 113 AD------VN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~-~G~TPLhlAa~~g~~~~~~~lLe~LL~~ 185 (624)
++ ++.. +..|.||||+|+..|+ .++|++||++|++++.+|. .|+||||+|+. .+..+++++|++.
T Consensus 102 ~~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ 173 (236)
T 1ikn_D 102 TTPHLHSILKAT-NYNGHTCLHLASIHGY---LGIVELLVSLGADVNAQEPCNGRTALHLAVD----LQNPDLVSLLLKC 173 (236)
T ss_dssp TTTSSSCGGGCC-CTTCCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHTT
T ss_pred cchhHHHHhhcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHc
Confidence 65 5666 8889999999999999 9999999999999999998 99999999998 4556899999999
Q ss_pred CCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 186 DGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 186 gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
|++++ ..+..|.|||++|+..|.
T Consensus 174 ga~~~-------~~~~~g~tpl~~A~~~~~ 196 (236)
T 1ikn_D 174 GADVN-------RVTYQGYSPYQLTWGRPS 196 (236)
T ss_dssp TCCSC-------CCCTTCCCGGGGCTTSSC
T ss_pred CCCCC-------cccCCCCCHHHHHHccCc
Confidence 99998 778889999999988874
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.91 E-value=4.8e-24 Score=208.23 Aligned_cols=153 Identities=22% Similarity=0.254 Sum_probs=138.0
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006944 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~G 112 (624)
.++..+.+|.|+||.|+..|+.++|+.|++ .|++++.. |..|.||||+|+..|+.++|++|+++ |
T Consensus 32 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g 96 (231)
T 3aji_A 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDK-------------DDAGWSPLHIAASAGXDEIVKALLVK-G 96 (231)
T ss_dssp GGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-T
T ss_pred hhhcCCCCCCCHHHHHHHcCcHHHHHHHHH-hCCCCCCc-------------CCCCCCHHHHHHHcCHHHHHHHHHHc-C
Confidence 366778999999999999999999999999 89998876 68899999999999999999999988 8
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccc
Q 006944 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERN 192 (624)
Q Consensus 113 ADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~ 192 (624)
++++.+ +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+. .+..+++++|++.|++++
T Consensus 97 ~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~-- 166 (231)
T 3aji_A 97 AHVNAV-NQNGCTPLHYAASKNR---HEIAVMLLEGGANPDAKDHYDATAMHRAAA----KGNLKMVHILLFYKASTN-- 166 (231)
T ss_dssp CCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCSC--
T ss_pred CCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHH----cCCHHHHHHHHhcCCCcc--
Confidence 999988 8899999999999999 999999999999999999999999999998 556778889999999887
Q ss_pred ccccccccCCCCChhhhhhhcCC
Q 006944 193 LRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 193 ~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
..+..|.|||++|+..|.
T Consensus 167 -----~~~~~g~t~L~~A~~~~~ 184 (231)
T 3aji_A 167 -----IQDTEGNTPLHLACDEER 184 (231)
T ss_dssp -----CCCTTSCCHHHHHHHTTC
T ss_pred -----ccCCCCCCHHHHHHHCCC
Confidence 677889999999988874
No 27
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.91 E-value=3.1e-24 Score=209.59 Aligned_cols=155 Identities=23% Similarity=0.262 Sum_probs=143.8
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHH
Q 006944 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILS 109 (624)
Q Consensus 30 ~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe 109 (624)
...+++..+..|.||||.|+..|+.++++.|++ .|++++.. |..|.||||+|+..|+.+++++|++
T Consensus 62 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~ 127 (231)
T 3aji_A 62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV-KGAHVNAV-------------NQNGCTPLHYAASKNRHEIAVMLLE 127 (231)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred hCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 345677889999999999999999999999999 89998876 6899999999999999999999999
Q ss_pred hcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCC
Q 006944 110 ESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSV 189 (624)
Q Consensus 110 ~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv 189 (624)
+ |++++.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+. .+..+++++|++.|+++
T Consensus 128 ~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~ 198 (231)
T 3aji_A 128 G-GANPDAK-DHYDATAMHRAAAKGN---LKMVHILLFYKASTNIQDTEGNTPLHLACD----EERVEEAKFLVTQGASI 198 (231)
T ss_dssp T-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCS
T ss_pred c-CCCCCCc-CCCCCcHHHHHHHcCC---HHHHHHHHhcCCCccccCCCCCCHHHHHHH----CCCHHHHHHHHHCCCCC
Confidence 9 9999998 9999999999999999 999999999999999999999999999998 45567899999999999
Q ss_pred cccccccccccCCCCChhhhhhhcC
Q 006944 190 ERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 190 ~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
+ ..+..|.|||++|.+.+
T Consensus 199 ~-------~~~~~g~t~l~~A~~~~ 216 (231)
T 3aji_A 199 Y-------IENKEEKTPLQVAKGGL 216 (231)
T ss_dssp C-------CCCTTSCCHHHHSCHHH
T ss_pred C-------CCCCCCCCHHHHHHhhH
Confidence 8 77889999999998766
No 28
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.91 E-value=4.2e-24 Score=214.75 Aligned_cols=152 Identities=24% Similarity=0.319 Sum_probs=127.5
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006944 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~ 110 (624)
..+++..+.+|.||||.||..|+.++|+.|++ .|+++|.. |.+|.||||+|+..|+.++|++|+++
T Consensus 26 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 91 (261)
T 2xai_A 26 GWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGV-------------TADWHTPLFNACVSGSWDCVNLLLQH 91 (261)
T ss_dssp TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 34678889999999999999999999999999 88998877 67888999999999999999999988
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006944 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 111 ~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
|++++.. .+|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|++.|++++
T Consensus 92 -g~~~~~~--~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~ 161 (261)
T 2xai_A 92 -GASVQPE--SDLASPIHEAARRGH---VECVNSLIAYGGNIDHKISHLGTPLYLACE----NQQRACVKKLLESGADVN 161 (261)
T ss_dssp -TCCSSCS--CTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCBTTTBCHHHHHHH----TTCHHHHHHHHHHTCCTT
T ss_pred -CCCCCCC--CCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCcCCCCCCCHHHHHHH----hCCHHHHHHHHHcCCCCC
Confidence 8888854 568899999999888 889999999999999888889999999988 445567888888888776
Q ss_pred ccccccccccCCCCChhhhhhhcC
Q 006944 191 RNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 191 ~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
.+..|.||||+|+..|
T Consensus 162 --------~~~~g~t~Lh~A~~~~ 177 (261)
T 2xai_A 162 --------QGKGQDSPLHAVARTA 177 (261)
T ss_dssp --------CCBTTBCHHHHHHHHT
T ss_pred --------CCCCCCChHHHHHHcC
Confidence 2567778888776554
No 29
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.91 E-value=7.9e-25 Score=218.18 Aligned_cols=177 Identities=19% Similarity=0.187 Sum_probs=146.2
Q ss_pred CCCCcc----cCccChHHHHHHHHc---CCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHH
Q 006944 31 MNHLTV----ETDDAFASLLELAAN---NDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDI 103 (624)
Q Consensus 31 ~~~ini----~d~dg~TpLh~AA~~---Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dI 103 (624)
..+++. .+.+|.||||.||.. |+.++|+.||+ .|++++....+. .......|..|.||||+|+..|+.++
T Consensus 29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~ 105 (256)
T 2etb_A 29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ-IDKDSGNPKPLV--NAQCTDEFYQGHSALHIAIEKRSLQC 105 (256)
T ss_dssp TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH-HHHHTTCSSCGG--GCCCCSTTTTTCCHHHHHHHTTCHHH
T ss_pred CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHh-cCCcccchhhhc--ccccccccccCCCHHHHHHHcCCHHH
Confidence 445666 789999999999999 99999999999 888776543111 11223346789999999999999999
Q ss_pred HHHHHHhcCCCccccCCCC-------------CChHHHHHHhCCCCChHHHHHHHHH---CCCCCCCcCCCCCcHHHHHh
Q 006944 104 IRLILSESGADVNLSCGND-------------KSTALHCAASGGALNAVDVVKLLLA---AGADPNFVDAKGHHPVDVIV 167 (624)
Q Consensus 104 VklLLe~~GADVN~~~d~~-------------G~TpLH~AA~~G~~~~~eiVklLL~---~GAD~n~~D~~G~TPLhlAa 167 (624)
|++||++ |+++|.+ +.. |.||||+|+..|+ .++|++||+ .|+|++.+|..|+||||+|+
T Consensus 106 v~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~ 180 (256)
T 2etb_A 106 VKLLVEN-GADVHLR-ACGRFFQKHQGTCFYFGELPLSLAACTKQ---WDVVTYLLENPHQPASLEATDSLGNTVLHALV 180 (256)
T ss_dssp HHHHHHT-TCCTTCC-CCSGGGSCCSSSCCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHc-CCCCCcc-cccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCcCccCCCCCCHHHHHH
Confidence 9999999 9999998 665 9999999999999 999999999 99999999999999999999
Q ss_pred c--CCChh---hHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 168 V--PPKFQ---DVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 168 ~--~g~~~---~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
. .++.+ ...+++++|++.|++++....+....+..|.|||++|++.|.
T Consensus 181 ~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 233 (256)
T 2etb_A 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233 (256)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence 7 44433 123489999999988842222223788999999999999994
No 30
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.91 E-value=4.7e-24 Score=216.33 Aligned_cols=147 Identities=23% Similarity=0.312 Sum_probs=105.1
Q ss_pred CccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccc
Q 006944 38 TDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNL 117 (624)
Q Consensus 38 d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~ 117 (624)
+.++.|+||.||..|++++|+.||+ .|+++|.. |.+|.||||+||..|+.++|++||++ |+++|.
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~ 101 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLE-RGADINYA-------------NVDGLTALHQACIDDNVDMVKFLVEN-GANINQ 101 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCB-------------CTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTC
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHH-cCCCCccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCC
Confidence 4456777888888888888888877 67777765 46677777777777777777777776 777777
Q ss_pred cCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcC-----------------------------------------
Q 006944 118 SCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVD----------------------------------------- 156 (624)
Q Consensus 118 ~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D----------------------------------------- 156 (624)
. +..|.||||+|+..|+ .++|++|+++|++++.+|
T Consensus 102 ~-~~~g~tpL~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 177 (299)
T 1s70_B 102 P-DNEGWIPLHAAASCGY---LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177 (299)
T ss_dssp C-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred C-CCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHH
Confidence 6 6777777777777777 777777777777776554
Q ss_pred -------------------CCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006944 157 -------------------AKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 157 -------------------~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
..|.||||+|+. .+..+++++|++.|++++ ..+..|.||||+|+..|
T Consensus 178 ~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~g~d~~-------~~d~~g~tpL~~A~~~~ 243 (299)
T 1s70_B 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAA----KGYTEVLKLLIQARYDVN-------IKDYDGWTPLHAAAHWG 243 (299)
T ss_dssp HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHH----HTCHHHHHHHHTTTCCTT-------CCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHhccCcchhhhcCCCCCHHHHHHH----CCcHHHHHHHHHcCCCCC-------CcCCCCCcHHHHHHhcC
Confidence 246677777777 445567777777777776 55666777777766554
No 31
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.91 E-value=6.1e-24 Score=206.69 Aligned_cols=153 Identities=19% Similarity=0.177 Sum_probs=103.5
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC-
Q 006944 34 LTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG- 112 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~G- 112 (624)
++..+.+|.|+||.|+..|+.++++.|++ .|++++... ..+..|.||||+|+..|+.+++++|+++ |
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~----------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~ 96 (228)
T 2dzn_A 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDD----------YPDDSGWTPFHIACSVGNLEVVKSLYDR-PL 96 (228)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TCTTCCGGG----------CCCTTSCCHHHHHHHHCCHHHHHHHHSS-SS
T ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHh-ccccccccc----------cCCCCCCCHHHHHHHcCCHHHHHHHHhC-CC
Confidence 34578889999999999999999999998 774443321 0145666777777777777777777766 5
Q ss_pred -CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCC-CCCc
Q 006944 113 -ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATD-GSVE 190 (624)
Q Consensus 113 -ADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~g-adv~ 190 (624)
++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+. .+..+++++|++.| ++++
T Consensus 97 ~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~ 168 (228)
T 2dzn_A 97 KPDLNKI-TNQGVTCLHLAVGKKW---FEVSQFLIENGASVRIKDKFNQIPLHRAAS----VGSLKLIELLCGLGKSAVN 168 (228)
T ss_dssp CCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHTTTCCCSC
T ss_pred CcccccC-CcCCCCHHHHHHHcCC---HhHHHHHHHcCCCccccCCCCCCHHHHHHH----cCCHHHHHHHHhcCccccc
Confidence 666666 6667777777777666 677777777777777777777777777766 33445666666666 5555
Q ss_pred ccccccccccCCCCChhhhhhhc
Q 006944 191 RNLRVSTTTSNSNSPPLSPALEN 213 (624)
Q Consensus 191 ~~~~l~~a~~~~g~TpL~lAle~ 213 (624)
..+..|.|||++|+..
T Consensus 169 -------~~d~~g~t~L~~A~~~ 184 (228)
T 2dzn_A 169 -------WQDKQGWTPLFHALAE 184 (228)
T ss_dssp -------CCCTTSCCHHHHHHHT
T ss_pred -------CcCCCCCCHHHHHHHc
Confidence 4555666666666543
No 32
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=215.37 Aligned_cols=138 Identities=19% Similarity=0.199 Sum_probs=125.0
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHH
Q 006944 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILS 109 (624)
Q Consensus 30 ~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe 109 (624)
+.+..+..+.++.|+||.||..|+.++|+.||+ .|+++|.. |.+|+||||+||..|+.++|++||+
T Consensus 10 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~tpLh~A~~~g~~~~v~~Ll~ 75 (229)
T 2vge_A 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQP-------------NEEGITALHNAICGANYSIVDFLIT 75 (229)
T ss_dssp CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCccccccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 344455667889999999999999999999999 89999887 6899999999999999999999999
Q ss_pred hcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcC-CCCCcHHHHH--hcCCChhhHHHHHHHHHHCC
Q 006944 110 ESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVD-AKGHHPVDVI--VVPPKFQDVRLTLEELLATD 186 (624)
Q Consensus 110 ~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D-~~G~TPLhlA--a~~g~~~~~~~lLe~LL~~g 186 (624)
. |+++|.+ +..|+||||+|+..|+ .++|++||+.|++++.+| ..|+||||+| +. .+..+++++|++.|
T Consensus 76 ~-ga~~n~~-d~~g~tpLh~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~----~~~~~~v~~Ll~~g 146 (229)
T 2vge_A 76 A-GANVNSP-DSHGWTPLHCAASCND---TVICMALVQHGAAIFATTLSDGATAFEKCDPYR----EGYADCATYLADVE 146 (229)
T ss_dssp T-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTS----TTHHHHHHHHHHHH
T ss_pred C-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHh----cChHHHHHHHHHcC
Confidence 9 9999999 9999999999999999 999999999999999997 5999999999 77 66778888888887
Q ss_pred CCCc
Q 006944 187 GSVE 190 (624)
Q Consensus 187 adv~ 190 (624)
++++
T Consensus 147 a~~~ 150 (229)
T 2vge_A 147 QSMG 150 (229)
T ss_dssp HHTT
T ss_pred CCcc
Confidence 7665
No 33
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.2e-24 Score=202.06 Aligned_cols=143 Identities=24% Similarity=0.258 Sum_probs=117.9
Q ss_pred cccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCC
Q 006944 35 TVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGAD 114 (624)
Q Consensus 35 ni~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GAD 114 (624)
...++.|.|+||.||..|++++|+.||+ .|+++|.. |..|+||||+|+ .|+.++|++||++ |++
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~ 69 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLE-AGANPNAP-------------NSYGRRPIQVMM-MGSARVAELLLLH-GAE 69 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCC-------------CSSSCCTTTSSC-TTCHHHHHHHHTT-TCC
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHH-cCCHHHHHHHHHc-CCC
Confidence 3567789999999999999999999999 79999887 689999999986 9999999999998 999
Q ss_pred ccccCCCCCCh-HHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccc
Q 006944 115 VNLSCGNDKST-ALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNL 193 (624)
Q Consensus 115 VN~~~d~~G~T-pLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~ 193 (624)
+|.+ +..|.| |||+|+..|+ .++|++||++|++++.+|..|+||||+|+. .+..+++++|+++|++++
T Consensus 70 ~~~~-d~~g~ttpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~----~~~~~~v~~Ll~~ga~~~--- 138 (156)
T 1bi7_B 70 PNCA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVRDAWGRLPVDLAEE----LGHRDVARYLRAAAGGTR--- 138 (156)
T ss_dssp CCCC-CTTTCCCHHHHHHHHTC---HHHHHHHHHHTCCSSCCCTTCCCHHHHHHH----HTCHHHHHHHSSCC-------
T ss_pred CCCc-CCCCCcHHHHHHHHCCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHH----hCHHHHHHHHHHcCCCCC---
Confidence 9999 999999 9999999999 999999999999999999999999999998 566789999999999998
Q ss_pred cccccccCCCCChhh
Q 006944 194 RVSTTTSNSNSPPLS 208 (624)
Q Consensus 194 ~l~~a~~~~g~TpL~ 208 (624)
..+..|.|+.+
T Consensus 139 ----~~~~~g~t~~~ 149 (156)
T 1bi7_B 139 ----GSNHARIDAAE 149 (156)
T ss_dssp ---------------
T ss_pred ----ccCcCcCcccc
Confidence 56666666665
No 34
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.91 E-value=3.8e-24 Score=218.12 Aligned_cols=152 Identities=24% Similarity=0.266 Sum_probs=141.6
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHhcCCC-CCcccccccccccCCccccCCCCchHHHHH-----hcCCHHHHHHH
Q 006944 34 LTVETDDAFASLLELAANNDVEGFKRSIVCDPS-GVDEVGLWYGRQKGSKQMVNEQRTPLMVAA-----TYGSIDIIRLI 107 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~Ga-dvN~~~l~~~r~~~~~~~D~~G~TPLhlAA-----~~G~~dIVklL 107 (624)
++..|.+|.||||+||..|+.++|+.||+ .|+ +++.. +..|.||||+|+ ..++.+++++|
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~~g~tpL~~a~~~~~~~~~~~~~v~~L 169 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLD-SGVCKVDKQ-------------NRAGYSPIMLTALATLKTQDDIETVLQL 169 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TSCCCTTCC-------------CTTSCCHHHHGGGCCCCSHHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCcCCCC-------------CCCCCCHHHHHHHHHhhhhhhHHHHHHH
Confidence 77889999999999999999999999999 676 88877 689999999999 67899999999
Q ss_pred HHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHH-CC
Q 006944 108 LSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLA-TD 186 (624)
Q Consensus 108 Le~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~-~g 186 (624)
++. |++++.. +..|+||||+|+..|+ .++|++||++|+|+|.+|..|+||||+|+. .+..+++++|++ .|
T Consensus 170 l~~-g~~~~~~-~~~g~tpLh~A~~~g~---~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~----~g~~~iv~~Ll~~~g 240 (276)
T 4hbd_A 170 FRL-GNINAKA-SQAGQTALMLAVSHGR---VDVVKALLACEADVNVQDDDGSTALMCACE----HGHKEIAGLLLAVPS 240 (276)
T ss_dssp HHH-SCTTCCC-TTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHTSTT
T ss_pred HHc-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHhCCCCCCCCCCCCCCHHHHHHH----CCCHHHHHHHHhcCC
Confidence 999 8998887 8899999999999999 999999999999999999999999999999 566789999999 89
Q ss_pred CCCcccccccccccCCCCChhhhhhhcCC
Q 006944 187 GSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 187 adv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
++++ ..+..|.|||++|++.|.
T Consensus 241 ad~~-------~~d~~g~TpL~~A~~~g~ 262 (276)
T 4hbd_A 241 CDIS-------LTDRDGSTALMVALDAGQ 262 (276)
T ss_dssp CCTT-------CCCTTSCCHHHHHHHHTC
T ss_pred CCCc-------CcCCCCCCHHHHHHHcCC
Confidence 9988 788999999999999984
No 35
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.91 E-value=1.9e-24 Score=215.48 Aligned_cols=170 Identities=16% Similarity=0.146 Sum_probs=141.0
Q ss_pred CccChHHHHHHH---HcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCC
Q 006944 38 TDDAFASLLELA---ANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGAD 114 (624)
Q Consensus 38 d~dg~TpLh~AA---~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GAD 114 (624)
+.+|.||||.|+ ..|+.++|+.||+ .|++++....+ .....+..|.+|+||||+||..|+.++|++||++ |++
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~--~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~ 118 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLD-IAEKTGNMREF--INSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GAD 118 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHH-HHHHTTCHHHH--HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHH-hcccccchHhh--hcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCC
Confidence 377999999999 6799999999999 66654432110 1122334467999999999999999999999998 999
Q ss_pred ccccCC--------------CCCChHHHHHHhCCCCChHHHHHHHHH---CCCCCCCcCCCCCcHHHHHhcCCC-----h
Q 006944 115 VNLSCG--------------NDKSTALHCAASGGALNAVDVVKLLLA---AGADPNFVDAKGHHPVDVIVVPPK-----F 172 (624)
Q Consensus 115 VN~~~d--------------~~G~TpLH~AA~~G~~~~~eiVklLL~---~GAD~n~~D~~G~TPLhlAa~~g~-----~ 172 (624)
+|.. + ..|.||||+|+..|+ .++|++||+ .|+|++.+|..|+||||+|+..++ .
T Consensus 119 ~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~ 194 (260)
T 3jxi_A 119 VHAQ-ARGRFFQPKDEGGYFYFGELPLSLAACTNQ---PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENT 194 (260)
T ss_dssp TTCC-CEECCCSSSCCCCSCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHH
T ss_pred cCcc-ccccccCcccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHH
Confidence 9998 6 689999999999999 999999999 999999999999999999996443 2
Q ss_pred hhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 173 QDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 173 ~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
....+++++|++.|++++....+....+..|.|||++|++.|.
T Consensus 195 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 195 KFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence 2336899999999998854333445788999999999999994
No 36
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.90 E-value=4.9e-24 Score=223.57 Aligned_cols=167 Identities=11% Similarity=0.080 Sum_probs=135.8
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc------------------ccccc----ccCCcc------
Q 006944 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG------------------LWYGR----QKGSKQ------ 83 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~------------------l~~~r----~~~~~~------ 83 (624)
-+++..+..|.||||+||..|+.++|++||+ .|++++... +++.. +...+.
T Consensus 44 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 122 (364)
T 3ljn_A 44 VSPTIQNRFGCTALHLACKFGCVDTAKYLAS-VGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECD 122 (364)
T ss_dssp CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHH-HCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCC
T ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcc
Confidence 3566677777777777777777777777777 666665421 11111 222222
Q ss_pred -----------ccCCCCchHHHHHhcC--CHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCC
Q 006944 84 -----------MVNEQRTPLMVAATYG--SIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGA 150 (624)
Q Consensus 84 -----------~D~~G~TPLhlAA~~G--~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GA 150 (624)
.|.+|.||||+|+..| +.++|++||++ |+++|.+ +..|.||||+|+..|+ .++|++||++|+
T Consensus 123 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~g~ 197 (364)
T 3ljn_A 123 EREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAK-DKADETPLMRAMEFRN---REALDLMMDTVP 197 (364)
T ss_dssp CCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHCS
T ss_pred hHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHhccc
Confidence 7788999999999999 99999999999 8999998 8999999999999999 999999999999
Q ss_pred C-----CCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 151 D-----PNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 151 D-----~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
+ ++.+|..|+||||+|+. .+..+++++|++.|++++ ..+..|.|||++|++.|.
T Consensus 198 ~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~gad~~-------~~d~~g~tpL~~A~~~g~ 256 (364)
T 3ljn_A 198 SKSSLRLDYANKQGNSHLHWAIL----INWEDVAMRFVEMGIDVN-------MEDNEHTVPLYLSVRAAM 256 (364)
T ss_dssp CSSSCCTTCCCTTCCCTTHHHHT----TTCHHHHHHHHTTTCCTT-------CCCTTSCCHHHHHHHTCC
T ss_pred ccccccccccCCCCCcHHHHHHH----cCCHHHHHHHHHcCCCCC-------CCCCCCCCHHHHHHHhCh
Confidence 8 99999999999999998 455678899999999988 778899999999999884
No 37
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.90 E-value=2.9e-24 Score=224.20 Aligned_cols=156 Identities=15% Similarity=0.037 Sum_probs=140.0
Q ss_pred cCCCCcc-cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCC---HHHHH
Q 006944 30 DMNHLTV-ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGS---IDIIR 105 (624)
Q Consensus 30 ~~~~ini-~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~---~dIVk 105 (624)
..-+++. .+.+|.||||+||..|+.++|+.||+ .|+++|.. |.+|+||||+|+..|+ .++++
T Consensus 119 ~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~-------------d~~g~TpLh~A~~~g~~~~~~~~~ 184 (327)
T 1sw6_A 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYG-------------DNMGESCLVKAVKSVNNYDSGTFE 184 (327)
T ss_dssp SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBC-------------CTTCCCHHHHHHHSSHHHHTTCHH
T ss_pred cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHhcccccHHHHH
Confidence 3467788 89999999999999999999999999 89999987 6899999999999999 78999
Q ss_pred HHHHhcCCCccccCCCCCChHHHHHHh----CCCCChHHHHHHHHHCCC-------------------------------
Q 006944 106 LILSESGADVNLSCGNDKSTALHCAAS----GGALNAVDVVKLLLAAGA------------------------------- 150 (624)
Q Consensus 106 lLLe~~GADVN~~~d~~G~TpLH~AA~----~G~~~~~eiVklLL~~GA------------------------------- 150 (624)
.||+..+++++.+ +..|+||||+|+. .|+ .++|++|++.++
T Consensus 185 ~ll~~~~~~~~~~-d~~g~tpLh~A~~~~~~~g~---~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t 260 (327)
T 1sw6_A 185 ALLDYLYPCLILE-DSMNRTILHHIIITSGMTGC---SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 260 (327)
T ss_dssp HHHHHHGGGGGEE-CTTCCCHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHGGGCCEEEC----------------C
T ss_pred HHHHhhhccccCC-CCCCCCHHHHHHHHcccccc---HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCC
Confidence 9998855899999 9999999999999 899 999999998743
Q ss_pred --------------CCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006944 151 --------------DPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 151 --------------D~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
+++.+|..|+||||+|+. .+..+++++|+++|++++ ..+..|.|||++|+++|
T Consensus 261 ~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~Gad~~-------~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 261 SILENLDLKWIIANMLNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADPF-------IANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCTT-------CCCTTSCCGGGGTCC--
T ss_pred hhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCc-------ccCCCCCCHHHHHHhcC
Confidence 688889999999999998 556789999999999998 88899999999998876
No 38
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.90 E-value=2.6e-24 Score=214.97 Aligned_cols=153 Identities=23% Similarity=0.271 Sum_probs=76.7
Q ss_pred CCcccCccChHHHHHHHHcC-------------CHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcC
Q 006944 33 HLTVETDDAFASLLELAANN-------------DVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYG 99 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~G-------------dle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G 99 (624)
+++.+|.+|.||||.|+..| +.++++.||+ .|++++... |.+|+||||+||..|
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~------------d~~g~t~L~~A~~~g 68 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY-QGASLHNQT------------DRTGETALHLAARYS 68 (253)
T ss_dssp ---------------------------------------------------CC------------CTTSCCHHHHHHHTT
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHH-ccCCccccc------------CCCCCcHHHHHHHcC
Confidence 57889999999999999987 9999999999 888876542 566677777777777
Q ss_pred CHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCC-CCCCcCCCCCcHHHHHhcCCChhhHHHH
Q 006944 100 SIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGA-DPNFVDAKGHHPVDVIVVPPKFQDVRLT 178 (624)
Q Consensus 100 ~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GA-D~n~~D~~G~TPLhlAa~~g~~~~~~~l 178 (624)
+.++|++||++ |++++.+ +..|.||||+|+..|+ .+++++|++.|+ +++.+|..|.||||+|+. .+..++
T Consensus 69 ~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~----~~~~~~ 139 (253)
T 1yyh_A 69 RSDAAKRLLEA-SADANIQ-DNMGRTPLHAAVSADA---QGVFQILIRNRATDLDARMHDGTTPLILAAR----LAVEGM 139 (253)
T ss_dssp CHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH----HTCSSH
T ss_pred CHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCcHHHHHHH----cChHHH
Confidence 77777777766 6777766 6667777777777666 677777777665 666666677777777766 333445
Q ss_pred HHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006944 179 LEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 179 Le~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
+++|++.|++++ ..+..|.||||+|+..|
T Consensus 140 v~~Ll~~g~~~~-------~~d~~g~t~L~~A~~~~ 168 (253)
T 1yyh_A 140 LEDLINSHADVN-------AVDDLGKSALHWAAAVN 168 (253)
T ss_dssp HHHHHHTTCCTT-------CBCTTSCBHHHHHHHHT
T ss_pred HHHHHHcCCCCC-------CcCCCCCCHHHHHHHcC
Confidence 666666666665 45556666666666655
No 39
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.90 E-value=1.9e-23 Score=203.20 Aligned_cols=152 Identities=19% Similarity=0.262 Sum_probs=129.1
Q ss_pred CCcc-cCccChHHHHHHHHcCCHHHHHHHHhcCC--CCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHH
Q 006944 33 HLTV-ETDDAFASLLELAANNDVEGFKRSIVCDP--SGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILS 109 (624)
Q Consensus 33 ~ini-~d~dg~TpLh~AA~~Gdle~Vk~LLe~~G--advN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe 109 (624)
+++. .+..|.||||.|+..|+.++++.|++ .| ++++.. +..|.||||+|+..|+.+++++|++
T Consensus 63 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~ 128 (228)
T 2dzn_A 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKI-------------TNQGVTCLHLAVGKKWFEVSQFLIE 128 (228)
T ss_dssp CGGGCCCTTSCCHHHHHHHHCCHHHHHHHHS-SSSCCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCcccccC-------------CcCCCCHHHHHHHcCCHhHHHHHHH
Confidence 3444 67889999999999999999999998 66 666655 6788999999999999999999998
Q ss_pred hcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCC-CCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHH-HCCC
Q 006944 110 ESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG-ADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELL-ATDG 187 (624)
Q Consensus 110 ~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~G-AD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL-~~ga 187 (624)
+ |++++.+ +..|.||||+|+..|+ .+++++|++.| ++++.+|..|+||||+|+. .+..+++++|+ +.|+
T Consensus 129 ~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~~ga 199 (228)
T 2dzn_A 129 N-GASVRIK-DKFNQIPLHRAASVGS---LKLIELLCGLGKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGA 199 (228)
T ss_dssp T-TCCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCC
T ss_pred c-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHhcCcccccCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCC
Confidence 8 8999988 8889999999999998 99999999998 8999999999999999998 44567788888 7888
Q ss_pred CCcccccccccccCCCCChhhhhhhcC
Q 006944 188 SVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 188 dv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
+++ ..+..|.|||++|.+.+
T Consensus 200 ~~~-------~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 200 EYD-------LVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp CSC-------CBCTTSCBGGGGCSSTT
T ss_pred CCC-------ccCCCCCcHHHHHHHHH
Confidence 888 77888999999987654
No 40
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.90 E-value=2e-23 Score=204.47 Aligned_cols=165 Identities=24% Similarity=0.248 Sum_probs=103.9
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHh---cCCCCCcccc--------------------cccccccCCccccCCCCc
Q 006944 34 LTVETDDAFASLLELAANNDVEGFKRSIV---CDPSGVDEVG--------------------LWYGRQKGSKQMVNEQRT 90 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe---~~GadvN~~~--------------------l~~~r~~~~~~~D~~G~T 90 (624)
++.+|.+|.|+||.||..|++++|+.|++ +.|.++|..+ +++..+.+.+..|..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 81 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT 81 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence 45688999999999999999999999997 4788888763 233344445555555666
Q ss_pred hHHHHHhcCCHHHHHHHHHhcCC----CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcC-CCCCcHHHH
Q 006944 91 PLMVAATYGSIDIIRLILSESGA----DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVD-AKGHHPVDV 165 (624)
Q Consensus 91 PLhlAA~~G~~dIVklLLe~~GA----DVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D-~~G~TPLhl 165 (624)
|||+|+..|+.+++++|++. |+ +++.. +..|.||||+|+..|+ .+++++|++.|++++..+ ..|.||||+
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~g~t~L~~ 156 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDS-AAPGTLDLEAR-NYDGLTALHVAVNTEC---QETVQLLLERGADIDAVDIKSGRSPLIH 156 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-SCTTSCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCcccccccc-CcCCCcHHHHHHHcCC---HHHHHHHHHcCCCcccccccCCCcHHHH
Confidence 66666666666666666655 44 55555 5556666666666666 666666666666666665 556666666
Q ss_pred HhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006944 166 IVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 166 Aa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
|+. .+..+++++|++.|++++ ..+..|.||||+|+..|
T Consensus 157 A~~----~~~~~~v~~Ll~~g~~~~-------~~~~~g~t~L~~A~~~~ 194 (241)
T 1k1a_A 157 AVE----NNSLSMVQLLLQHGANVN-------AQMYSGSSALHSASGRG 194 (241)
T ss_dssp HHH----TTCHHHHHHHHHTTCCTT-------CBCTTSCBHHHHHHHHT
T ss_pred HHH----cCCHHHHHHHHHcCCCCC-------CcCCCCCCHHHHHHHcC
Confidence 665 333455566666666655 44556666666666655
No 41
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.90 E-value=2.8e-23 Score=196.57 Aligned_cols=137 Identities=24% Similarity=0.254 Sum_probs=130.5
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006944 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~ 110 (624)
..+++..+..|.|+||.||..|+.++|+.||+ .|++++.. |..|.||||+|+..|+.++|++||++
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 94 (179)
T 3f6q_A 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVM-------------NRGDDTPLHLAASHGHRDIVQKLLQY 94 (179)
T ss_dssp TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 45678889999999999999999999999999 89999987 68999999999999999999999999
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006944 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 111 ~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
|+++|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|.|||++|+. .+..+++++|++.|++++
T Consensus 95 -g~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~----~~~~~~~~~L~~~g~~~~ 165 (179)
T 3f6q_A 95 -KADINAV-NEHGNVPLHYACFWGQ---DQVAEDLVANGALVSICNKYGEMPVDKAKA----PLRELLRERAEKMGQNLN 165 (179)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCSSBCCTTSCCGGGGSCH----HHHHHHHHHHHHTTCCCS
T ss_pred -CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCcchhccCCCCcHHHHHH----HHHHHHHHHHHHhhcCcc
Confidence 9999999 9999999999999999 999999999999999999999999999998 888999999999999987
No 42
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.90 E-value=3.8e-23 Score=212.49 Aligned_cols=103 Identities=30% Similarity=0.311 Sum_probs=63.4
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006944 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~ 110 (624)
..+++..+..|.||||.||..|+.++|+.||+ .|+++|..+ .+|.||||+|+..|+.++|++||++
T Consensus 48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~g~~~iv~~Ll~~ 113 (351)
T 3utm_A 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAKD-------------KGGLVPLHNACSYGHYEVTELLLKH 113 (351)
T ss_dssp TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccC-------------CCCCcHHHHHHHCCCHHHHHHHHHC
Confidence 34567778889999999999999999999998 888888763 4444555555555555555555444
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCC
Q 006944 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADP 152 (624)
Q Consensus 111 ~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~ 152 (624)
|++++.. +..|.||||+|+..|+ .++|++|+++|+++
T Consensus 114 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~ 150 (351)
T 3utm_A 114 -GACVNAM-DLWQFTPLHEAASKNR---VEVCSLLLSHGADP 150 (351)
T ss_dssp -TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCT
T ss_pred -CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCC
Confidence 4444444 4444444444444444 44444444444433
No 43
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.90 E-value=2.2e-23 Score=213.00 Aligned_cols=164 Identities=21% Similarity=0.310 Sum_probs=139.3
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccccCCccccCCCCch
Q 006944 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQKGSKQMVNEQRTP 91 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~r~~~~~~~D~~G~TP 91 (624)
+.++.++.+|.|+||.||..|+.++|+.||+ .|+++|..+ +++..+.+.+..|.+|.||
T Consensus 50 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~ 128 (285)
T 3d9h_A 50 NPLMGDAVSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP 128 (285)
T ss_dssp CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHH-TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCH
T ss_pred CcccCCCccCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 3466778888888888888888888888888 788877654 4455667777889999999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCC
Q 006944 92 LMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPK 171 (624)
Q Consensus 92 LhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~ 171 (624)
||+|+..|+.++|++|++. |++++.. .+|.||||+|+..|+ .++|++|++.|++++.+|..|+||||+|+.
T Consensus 129 L~~A~~~~~~~~v~~Ll~~-g~~~~~~--~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~--- 199 (285)
T 3d9h_A 129 LFNACVSGSWDCVNLLLQH-GASVQPE--SDLASPIHEAARRGH---VECVNSLIAYGGNIDHKISHLGTPLYLACE--- 199 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHT-TCCSSCS--CTTSCHHHHHHHHTC---HHHHHHHHHTTCCTTCCBTTTBCHHHHHHH---
T ss_pred HHHHHHcCHHHHHHHHHHC-CCCCCCC--CCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHH---
Confidence 9999999999999999998 8999865 569999999999999 999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006944 172 FQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 172 ~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
.+..+++++|++.|++++ .+..|.|||++|+..|
T Consensus 200 -~~~~~~v~~Ll~~ga~~~--------~~~~g~t~L~~A~~~~ 233 (285)
T 3d9h_A 200 -NQQRACVKKLLESGADVN--------QGKGQDSPLHAVVRTA 233 (285)
T ss_dssp -TTCHHHHHHHHHTTCCTT--------CCBTTBCHHHHHHHTT
T ss_pred -cCcHHHHHHHHHCCCCCC--------CCCCCCCHHHHHHHcC
Confidence 455678899999998886 2567888888887665
No 44
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.90 E-value=4.1e-24 Score=215.36 Aligned_cols=172 Identities=20% Similarity=0.250 Sum_probs=141.7
Q ss_pred ccCccChHHHHHHHHc---CCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006944 36 VETDDAFASLLELAAN---NDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~---Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~G 112 (624)
..+.+|.||||+||.. |+.++|+.||+ .|++++....+. .......|..|.||||+|+..|+.++|++||++ |
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~-~ga~~~~~~~~i--~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g 124 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLD-VARKTDSLKQFV--NASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-G 124 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHH-HHHHTTCHHHHH--TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHH-hhccccchhHHh--hcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-C
Confidence 3578999999999987 99999999999 776644321111 112233467999999999999999999999999 9
Q ss_pred CCccccCCC--------------CCChHHHHHHhCCCCChHHHHHHHHH---CCCCCCCcCCCCCcHHHHHhcCCCh---
Q 006944 113 ADVNLSCGN--------------DKSTALHCAASGGALNAVDVVKLLLA---AGADPNFVDAKGHHPVDVIVVPPKF--- 172 (624)
Q Consensus 113 ADVN~~~d~--------------~G~TpLH~AA~~G~~~~~eiVklLL~---~GAD~n~~D~~G~TPLhlAa~~g~~--- 172 (624)
++++.+ +. .|.||||+|+..|+ .++|++||+ .|+|++.+|..|+||||+|+..|+.
T Consensus 125 a~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~ 200 (273)
T 2pnn_A 125 ADVQAA-ANGDFFKKTKGRPGFYFGELPLSLAACTNQ---LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD 200 (273)
T ss_dssp CCTTCC-BCSGGGSSCSSSCCCCSCBSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred CCcCcc-ccccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchh
Confidence 999998 65 79999999999999 999999999 9999999999999999999985441
Q ss_pred --hhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 173 --QDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 173 --~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
....+++++|++.|++++....+....+..|.|||++|++.|.
T Consensus 201 ~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~ 245 (273)
T 2pnn_A 201 NTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence 1126789999999988873333334578899999999999994
No 45
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=209.82 Aligned_cols=145 Identities=23% Similarity=0.307 Sum_probs=132.7
Q ss_pred cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccC
Q 006944 40 DAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSC 119 (624)
Q Consensus 40 dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~ 119 (624)
+|+||||.||..|+.++|+.|++ .|+++|.. |.+|.||||+|+..|+.++|++||++ |+++|.+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~- 65 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS-QGWAVNII-------------TADHVSPLHEACLGGHLSCVKILLKH-GAQVNGV- 65 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCSSCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-
Confidence 58899999999999999999999 89999887 68999999999999999999999999 9999999
Q ss_pred CCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccc
Q 006944 120 GNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTT 199 (624)
Q Consensus 120 d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~ 199 (624)
+.+|.||||+|+..|+ .++|++|+++|++++. +..|.||||+|+. .+..+++++|++.|++++ ..
T Consensus 66 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~-------~~ 130 (261)
T 2xai_A 66 TADWHTPLFNACVSGS---WDCVNLLLQHGASVQP-ESDLASPIHEAAR----RGHVECVNSLIAYGGNID-------HK 130 (261)
T ss_dssp CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSC-SCTTCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------CC
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCC-CCCCCCHHHHHHH----cCcHHHHHHHHHcCCCCC-------cC
Confidence 9999999999999999 9999999999999986 5569999999999 455678999999999988 67
Q ss_pred cCCCCChhhhhhhcCC
Q 006944 200 SNSNSPPLSPALENGS 215 (624)
Q Consensus 200 ~~~g~TpL~lAle~Gs 215 (624)
+..|.||||+|++.|.
T Consensus 131 ~~~g~t~L~~A~~~~~ 146 (261)
T 2xai_A 131 ISHLGTPLYLACENQQ 146 (261)
T ss_dssp BTTTBCHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHhCC
Confidence 8889999999998873
No 46
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=212.34 Aligned_cols=129 Identities=23% Similarity=0.264 Sum_probs=80.8
Q ss_pred cccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHC
Q 006944 69 DEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA 148 (624)
Q Consensus 69 N~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~ 148 (624)
+.+.+++..+.+.+..|.+|+||||+||..|+.++|++||++ |++++.+ +..|.||||+|+..|+ .++|++|++.
T Consensus 73 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ 147 (285)
T 3d9h_A 73 LSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGV-TADWHTPLFNACVSGS---WDCVNLLLQH 147 (285)
T ss_dssp HHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCC-CTTCCCHHHHHHHHTC---HHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCH---HHHHHHHHHC
Confidence 333344555556666666666666666666666666666666 6666666 6666666666666666 6666666666
Q ss_pred CCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006944 149 GADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 149 GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
|++++..+ .|.||||+|+. .+..+++++|++.|++++ ..+..|.|||++|+..|
T Consensus 148 g~~~~~~~-~g~t~L~~A~~----~g~~~~v~~Ll~~g~~~~-------~~d~~g~t~L~~A~~~~ 201 (285)
T 3d9h_A 148 GASVQPES-DLASPIHEAAR----RGHVECVNSLIAYGGNID-------HKISHLGTPLYLACENQ 201 (285)
T ss_dssp TCCSSCSC-TTSCHHHHHHH----HTCHHHHHHHHHTTCCTT-------CCBTTTBCHHHHHHHTT
T ss_pred CCCCCCCC-CCCCHHHHHHH----cCCHHHHHHHHHCCCCCC-------CcCCCCCCHHHHHHHcC
Confidence 66665433 36666666666 444556666666666665 55666777777777666
No 47
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.90 E-value=7.9e-24 Score=198.41 Aligned_cols=135 Identities=24% Similarity=0.270 Sum_probs=124.3
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006944 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~G 112 (624)
.++..+..|.|+||.|+..|+.++|+.||+ .|++++.. |..|.||||+|+..|+.++|++|+++ |
T Consensus 28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g 92 (172)
T 3v30_A 28 LVNKPDERGFTPLIWASAFGEIETVRFLLE-WGADPHIL-------------AKERESALSLASTGGYTDIVGLLLER-D 92 (172)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHTT-T
T ss_pred cccCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhh-------------cccCCCHHHHHHHCCCHHHHHHHHHc-C
Confidence 377888999999999999999999999999 89999887 68999999999999999999999998 9
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006944 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 113 ADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
++++.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|++++++..
T Consensus 93 ~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~----~~~~~~~~~L~~~~~~~~ 162 (172)
T 3v30_A 93 VDINIY-DWNGGTPLLYAVRGNH---VKCVEALLARGADLTTEADSGYTPMDLAVA----LGYRKVQQVIENHILKLF 162 (172)
T ss_dssp CCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHHHHHHS
T ss_pred CCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHH----hCcHHHHHHHHHHHHHHh
Confidence 999999 9999999999999999 999999999999999999999999999999 556677777777776554
No 48
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=1.9e-23 Score=189.52 Aligned_cols=128 Identities=27% Similarity=0.309 Sum_probs=116.1
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCc
Q 006944 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADV 115 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADV 115 (624)
.....+.|+||+||..|+.++|+.||+ .|+++|.. |..|.||||+|+..|+.++|++||++ |+++
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~ 73 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMA-NGADVNAK-------------DEYGLTPLYLATAHGHLEIVEVLLKN-GADV 73 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCT
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence 345678999999999999999999999 89999877 68999999999999999999999999 9999
Q ss_pred cccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCC
Q 006944 116 NLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATD 186 (624)
Q Consensus 116 N~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~g 186 (624)
|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|++.|
T Consensus 74 ~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~----~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 74 NAV-DAIGFTPLHLAAFIGH---LEIAEVLLKHGADVNAQDKFGKTAFDISIG----NGNEDLAEILQKLN 136 (136)
T ss_dssp TCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHC-
T ss_pred CcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcCcCCCCCCHHHHHHH----CCCHHHHHHHHHcC
Confidence 998 9999999999999999 999999999999999999999999999999 45567788887765
No 49
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.90 E-value=2.7e-23 Score=220.53 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=148.3
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccc---cCCccccC
Q 006944 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQ---KGSKQMVN 86 (624)
Q Consensus 30 ~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~r~---~~~~~~D~ 86 (624)
...+++..|.+|.||||.|+..|+.++|+.||+ .|++++..+ +++..+ .+.+..|.
T Consensus 155 ~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~ 233 (373)
T 2fo1_E 155 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233 (373)
T ss_dssp TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred cCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC
Confidence 345788899999999999999999999999999 899998754 233333 57778899
Q ss_pred CCCchHHHHHhcC---CHHHHHHHHHhcCCCcccc-------CCCCCChHHHHHHhCCCCChHHHHHHHHHCC-CCCCCc
Q 006944 87 EQRTPLMVAATYG---SIDIIRLILSESGADVNLS-------CGNDKSTALHCAASGGALNAVDVVKLLLAAG-ADPNFV 155 (624)
Q Consensus 87 ~G~TPLhlAA~~G---~~dIVklLLe~~GADVN~~-------~d~~G~TpLH~AA~~G~~~~~eiVklLL~~G-AD~n~~ 155 (624)
.|.||||+|+..| +.++|++|+++ |++++.. .+..|.||||+|+..|+ .++|++||+.| ++++.+
T Consensus 234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~n~~ 309 (373)
T 2fo1_E 234 NGMTALMIVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKYKGRTALHYAAQVSN---MPIVKYLVGEKGSNKDKQ 309 (373)
T ss_dssp TSCCHHHHHHHSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC---HHHHHHHHHHSCCCTTCC
T ss_pred CCCCHHHHHHHhCCcchHHHHHHHHHC-CCCcccccccccCcccccCCCHHHHHHHhCC---HHHHHHHHHhcCCCccCc
Confidence 9999999999988 89999999999 8999862 16689999999999999 99999999875 999999
Q ss_pred CCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 156 DAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 156 D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
|..|+||||+|+. .+..+++++|+++|++++ ..+..|.|||++|+++|.
T Consensus 310 d~~g~TpL~~A~~----~g~~~iv~~Ll~~gad~~-------~~d~~g~t~l~~A~~~g~ 358 (373)
T 2fo1_E 310 DEDGKTPIMLAAQ----EGRIEVVMYLIQQGASVE-------AVDATDHTARQLAQANNH 358 (373)
T ss_dssp CTTCCCHHHHHHH----HTCHHHHHHHHHTTCCSS-------CCCSSSCCHHHHHHHTTC
T ss_pred CCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc-------CCCCCCCCHHHHHHHcCC
Confidence 9999999999998 566788999999999988 778899999999999984
No 50
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.90 E-value=3.4e-23 Score=210.04 Aligned_cols=153 Identities=24% Similarity=0.301 Sum_probs=135.7
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHH
Q 006944 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILS 109 (624)
Q Consensus 30 ~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe 109 (624)
...+++..+.+|.||||.||..|+.++|+.||+ .|+++|.. |..|.||||+|+..|+.++|++||+
T Consensus 62 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~tpL~~A~~~g~~~~v~~Ll~ 127 (299)
T 1s70_B 62 RGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQP-------------DNEGWIPLHAAASCGYLDIAEYLIS 127 (299)
T ss_dssp HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 345788899999999999999999999999999 89999987 6899999999999999999999999
Q ss_pred hcCCCccccCCC------------------------------------------------------------CCChHHHH
Q 006944 110 ESGADVNLSCGN------------------------------------------------------------DKSTALHC 129 (624)
Q Consensus 110 ~~GADVN~~~d~------------------------------------------------------------~G~TpLH~ 129 (624)
+ |++++.. +. .|.||||+
T Consensus 128 ~-g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~ 205 (299)
T 1s70_B 128 Q-GAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHV 205 (299)
T ss_dssp T-TCCTTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHH
T ss_pred C-CCCCCCc-CCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHH
Confidence 9 9999976 43 46788889
Q ss_pred HHhCCCCChHHHHHHHHHCCCCCCCcCC--CCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChh
Q 006944 130 AASGGALNAVDVVKLLLAAGADPNFVDA--KGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPL 207 (624)
Q Consensus 130 AA~~G~~~~~eiVklLL~~GAD~n~~D~--~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL 207 (624)
|+..|+ .++|++|+++|+|++ -. .|+||||+|+. .+..+++++|++.|++++ ..+..|.|||
T Consensus 206 A~~~g~---~~~v~~Ll~~g~d~~--~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~gad~~-------~~d~~g~t~l 269 (299)
T 1s70_B 206 AAAKGY---TEVLKLLIQARYDVN--IKDYDGWTPLHAAAH----WGKEEACRILVENLCDME-------AVNKVGQTAF 269 (299)
T ss_dssp HHHHTC---HHHHHHHHTTTCCTT--CCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------CCCTTSCCTT
T ss_pred HHHCCc---HHHHHHHHHcCCCCC--CcCCCCCcHHHHHHh----cCCHHHHHHHHHcCCCCC-------CcCCCCCCHH
Confidence 999999 999999999998863 43 69999999999 455678999999999998 7889999999
Q ss_pred hhhhhcC
Q 006944 208 SPALENG 214 (624)
Q Consensus 208 ~lAle~G 214 (624)
++|.+..
T Consensus 270 ~~A~~~~ 276 (299)
T 1s70_B 270 DVADEDI 276 (299)
T ss_dssp TSCCSGG
T ss_pred HHHHHHH
Confidence 9997644
No 51
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.90 E-value=2e-23 Score=218.95 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=116.7
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhc
Q 006944 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSES 111 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~ 111 (624)
-+.+..|.+|.|+||.||..|++++|++||+ .|+++|.. |..|.||||+||..|+.++|++||++
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~- 75 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQ-------------NRFGCTALHLACKFGCVDTAKYLASV- 75 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHCCHHHHHHHHHH-
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-------------CCCCCcHHHHHHHcCCHHHHHHHHHC-
Confidence 3455678899999999999999999999999 89999887 46667777777777777777777766
Q ss_pred CCCccc----------------------------------------------------cCCCCCChHHHHHHhCC--CCC
Q 006944 112 GADVNL----------------------------------------------------SCGNDKSTALHCAASGG--ALN 137 (624)
Q Consensus 112 GADVN~----------------------------------------------------~~d~~G~TpLH~AA~~G--~~~ 137 (624)
|++++. . +..|.||||+|+..| +
T Consensus 76 g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~-- 152 (364)
T 3ljn_A 76 GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVK-HCKGQTALHWCVGLGPEY-- 152 (364)
T ss_dssp CCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEE-EESCCCHHHHHHHSCGGG--
T ss_pred CCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccC-CCCCCCHHHHHHHcCCch--
Confidence 555543 4 556788888888888 7
Q ss_pred hHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCC-----CcccccccccccCCCCChhhhhhh
Q 006944 138 AVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGS-----VERNLRVSTTTSNSNSPPLSPALE 212 (624)
Q Consensus 138 ~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gad-----v~~~~~l~~a~~~~g~TpL~lAle 212 (624)
.++|++||++|+|++.+|..|+||||+|+. .+..+++++|++.|++ ++ ..+..|.||||+|+.
T Consensus 153 -~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~g~~~~~~~~~-------~~~~~g~t~L~~A~~ 220 (364)
T 3ljn_A 153 -LEMIKILVQLGASPTAKDKADETPLMRAME----FRNREALDLMMDTVPSKSSLRLD-------YANKQGNSHLHWAIL 220 (364)
T ss_dssp -HHHHHHHHHHTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHCSCSSSCCTT-------CCCTTCCCTTHHHHT
T ss_pred -HHHHHHHHHcCCCCcccCCCCCCHHHHHHH----cCCHHHHHHHHhccccccccccc-------ccCCCCCcHHHHHHH
Confidence 888888888888888888888888888887 4455677777777777 44 566778888888887
Q ss_pred cCC
Q 006944 213 NGS 215 (624)
Q Consensus 213 ~Gs 215 (624)
.|.
T Consensus 221 ~g~ 223 (364)
T 3ljn_A 221 INW 223 (364)
T ss_dssp TTC
T ss_pred cCC
Confidence 774
No 52
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.89 E-value=5.7e-23 Score=196.33 Aligned_cols=148 Identities=22% Similarity=0.266 Sum_probs=135.4
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcccc
Q 006944 39 DDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLS 118 (624)
Q Consensus 39 ~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~ 118 (624)
..+.|+||.||..|+.+.|+.||+..+.++|.. |.+|.||||+|+..|+.++|++||++ |++++.+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~ 68 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-------------DTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQ 68 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC
Confidence 457899999999999999999999666688877 68999999999999999999999999 9999998
Q ss_pred CCCCCChHHHHHHhCCCCChHHHHHHHH-HCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCC-CCCccccccc
Q 006944 119 CGNDKSTALHCAASGGALNAVDVVKLLL-AAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATD-GSVERNLRVS 196 (624)
Q Consensus 119 ~d~~G~TpLH~AA~~G~~~~~eiVklLL-~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~g-adv~~~~~l~ 196 (624)
+..|.||||+|+..|+ .+++++|+ ..+++++..|..|.||||+|+. .+..+++++|++.| ++++
T Consensus 69 -~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~------ 134 (201)
T 3hra_A 69 -NSISDSPYLYAGAQGR---TEILAYMLKHATPDLNKHNRYGGNALIPAAE----KGHIDNVKLLLEDGREDID------ 134 (201)
T ss_dssp -CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHH----TTCHHHHHHHHHHCCCCTT------
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHhccCcccccccCCCCcHHHHHHH----cCCHHHHHHHHHcCCCCcC------
Confidence 9999999999999999 99999999 6688999999999999999999 45567889999988 7777
Q ss_pred ccccCCCCChhhhhhhcCC
Q 006944 197 TTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 197 ~a~~~~g~TpL~lAle~Gs 215 (624)
..+..|.||||+|+..|.
T Consensus 135 -~~~~~g~t~L~~A~~~~~ 152 (201)
T 3hra_A 135 -FQNDFGYTALIEAVGLRE 152 (201)
T ss_dssp -CCCTTSCCHHHHHHHSSC
T ss_pred -CCCCCCCCHHHHHHHhcc
Confidence 678899999999998874
No 53
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.89 E-value=1.5e-22 Score=201.55 Aligned_cols=171 Identities=23% Similarity=0.286 Sum_probs=132.0
Q ss_pred CCccc-CccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccccCCccccCCCCch
Q 006944 33 HLTVE-TDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQKGSKQMVNEQRTP 91 (624)
Q Consensus 33 ~ini~-d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~r~~~~~~~D~~G~TP 91 (624)
+++.. +..|.|+||.|+..|+.++|+.|++ .|++++..+ +++..+.+.+..|..|.||
T Consensus 30 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 108 (285)
T 1wdy_A 30 NVNFQEEEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA 108 (285)
T ss_dssp CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBH
T ss_pred CcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCH
Confidence 34444 5667777777777777777777777 677766542 3334455555667888888
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCccccC---------CCCCChHHHHHHhCCCCChHHHHHHHHHC-CCCCCCcCCCCCc
Q 006944 92 LMVAATYGSIDIIRLILSESGADVNLSC---------GNDKSTALHCAASGGALNAVDVVKLLLAA-GADPNFVDAKGHH 161 (624)
Q Consensus 92 LhlAA~~G~~dIVklLLe~~GADVN~~~---------d~~G~TpLH~AA~~G~~~~~eiVklLL~~-GAD~n~~D~~G~T 161 (624)
||+|+..|+.+++++|+++ |++++... +..|.||||+|+..|+ .+++++|++. |++++.+|..|+|
T Consensus 109 L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~g~t 184 (285)
T 1wdy_A 109 FMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVLKILLDEMGADVNACDNMGRN 184 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC---HHHHHHHHHTSCCCTTCCCTTSCC
T ss_pred HHHHHHhCCHHHHHHHHHh-CCCcccccccHHHHHhhccCCCcHHHHHHHcCC---HHHHHHHHHhcCCCCCccCCCCCC
Confidence 8888888888888888887 78887652 4568888888888888 8888888887 8888888888888
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 162 PVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 162 PLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
|||+|+..++.....+++++|++.|++++ ..+..|.||||+|++.|.
T Consensus 185 ~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~-------~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 185 ALIHALLSSDDSDVEAITHLLLDHGADVN-------VRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HHHHHHHCSCTTTHHHHHHHHHHTTCCSS-------CCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHccccchHHHHHHHHHHcCCCCC-------CcCCCCCcHHHHHHHcCC
Confidence 88888887777777888888888888887 667788999999988874
No 54
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.89 E-value=5.3e-23 Score=220.63 Aligned_cols=167 Identities=22% Similarity=0.236 Sum_probs=140.7
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccccCCccccCCCCch
Q 006944 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQKGSKQMVNEQRTP 91 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~r~~~~~~~D~~G~TP 91 (624)
.+++..+.+|.|+||.|+..|+.++++.|++ .|+++|..+ +++..+.+.+..+..|.||
T Consensus 203 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~ 281 (437)
T 1n11_A 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP 281 (437)
T ss_dssp CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCH
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 3455566667777777777777777777777 666666542 3344555566668999999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCC
Q 006944 92 LMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPK 171 (624)
Q Consensus 92 LhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~ 171 (624)
||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .++|++|+++|+|+|.+|..|+||||+|+.
T Consensus 282 L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~--- 353 (437)
T 1n11_A 282 LHLVAQEGHVPVADVLIKH-GVMVDAT-TRMGYTPLHVASHYGN---IKLVKFLLQHQADVNAKTKLGYSPLHQAAQ--- 353 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHH-TCCTTCC-CSSCCCHHHHHHHSSC---SHHHHHHHHTTCCTTCCCTTSCCHHHHHHH---
T ss_pred HHHHHHcCCHHHHHHHHhC-CccCCCC-CCCCCCHHHHHHHcCc---HHHHHHHHhcCCCCCCCCCCCCCHHHHHHH---
Confidence 9999999999999999999 9999998 8999999999999999 999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 172 FQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 172 ~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
.+..+++++|+++|++++ ..+..|.|||++|.+.|.
T Consensus 354 -~g~~~iv~~Ll~~ga~~~-------~~~~~g~t~l~~A~~~g~ 389 (437)
T 1n11_A 354 -QGHTDIVTLLLKNGASPN-------EVSSDGTTPLAIAKRLGY 389 (437)
T ss_dssp -TTCHHHHHHHHHTTCCSC-------CCCSSSCCHHHHHHHTTC
T ss_pred -CChHHHHHHHHHCcCCCC-------CCCCCCCCHHHHHHHcCc
Confidence 455678999999999998 778899999999999984
No 55
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.89 E-value=8.3e-23 Score=211.96 Aligned_cols=173 Identities=23% Similarity=0.274 Sum_probs=148.9
Q ss_pred CCCCcccCc-cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccccCCccccCCCC
Q 006944 31 MNHLTVETD-DAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQKGSKQMVNEQR 89 (624)
Q Consensus 31 ~~~ini~d~-dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~r~~~~~~~D~~G~ 89 (624)
.-+++.++. .|+||||+||..|+.++|+.||+ .|++++..+ .+...+.+.+..|..|.
T Consensus 48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 126 (337)
T 4g8k_A 48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGF 126 (337)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCC
T ss_pred CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCC
Confidence 346676665 48999999999999999999999 999988754 23445667788899999
Q ss_pred chHHHHHhcCCHHHHHHHHHhcCCCccccC---------CCCCChHHHHHHhCCCCChHHHHHHHHH-CCCCCCCcCCCC
Q 006944 90 TPLMVAATYGSIDIIRLILSESGADVNLSC---------GNDKSTALHCAASGGALNAVDVVKLLLA-AGADPNFVDAKG 159 (624)
Q Consensus 90 TPLhlAA~~G~~dIVklLLe~~GADVN~~~---------d~~G~TpLH~AA~~G~~~~~eiVklLL~-~GAD~n~~D~~G 159 (624)
||||+|+..|+.+++++|+++ |++++... +..|.||||+|+..|+ .++|++||+ .|+|++.+|..|
T Consensus 127 t~l~~A~~~~~~~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~---~~~v~~LL~~~gad~n~~d~~g 202 (337)
T 4g8k_A 127 TAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVLKILLDEMGADVNACDNMG 202 (337)
T ss_dssp BHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHHHTC---HHHHHHHHHHSCCCTTCCCTTS
T ss_pred CHHHHHHHcCcHHHHHHHHHc-CCCcchhhccccccccccCCCCcHHHHHHHCCC---HHHHHHHHhccCCCcCccCCCC
Confidence 999999999999999999998 89988641 3468999999999999 999999996 599999999999
Q ss_pred CcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 160 HHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 160 ~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
+|+++.++..+.......++++|++.|++++ ..+..|.||||+|++.|.
T Consensus 203 ~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n-------~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 203 RNALIHALLSSDDSDVEAITHLLLDHGADVN-------VRGERGKTPLILAVEKKH 251 (337)
T ss_dssp CCHHHHHHHHSCTTTHHHHHHHHHHTTCCTT-------CCCGGGCCHHHHHHHTTC
T ss_pred CcHHHHHHHHcCcccHHHHHHHHHHCCCCCC-------CcCCCCCCHHHHHHHhhh
Confidence 9999998876666778889999999999998 677788899999888873
No 56
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=2e-23 Score=189.00 Aligned_cols=129 Identities=27% Similarity=0.317 Sum_probs=117.6
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCc
Q 006944 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADV 115 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADV 115 (624)
.++.+|.|+||.||..|+.++++.||+ .|++++.. |..|.||||+|+..|+.+++++||++ |+++
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~ 69 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVK-------------DHAGWTPLHEACNHGHLKVVELLLQH-KALV 69 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCcc
Confidence 578899999999999999999999999 89999877 68999999999999999999999998 9999
Q ss_pred cccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCC
Q 006944 116 NLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDG 187 (624)
Q Consensus 116 N~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~ga 187 (624)
+.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+. .+..+++++|.+.+.
T Consensus 70 ~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~----~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 70 NTT-GYQNDSPLHDAAKNGH---VDIVKLLLSYGASRNAVNIFGLRPVDYTDD----ESMKSLLLLPEKNES 133 (137)
T ss_dssp TCC-CGGGCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCGGGGCCC----HHHHHHHSCC-----
T ss_pred cCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHhh----ccHHHHHhhcccccc
Confidence 999 9999999999999999 999999999999999999999999999998 778888877665543
No 57
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.89 E-value=6.7e-23 Score=192.43 Aligned_cols=134 Identities=28% Similarity=0.373 Sum_probs=122.9
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHH
Q 006944 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILS 109 (624)
Q Consensus 30 ~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe 109 (624)
...+++..+.+|.|+||.|+..|+.++|+.|++ .|++++.. |..|.||||+|+..|+.+++++|++
T Consensus 36 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~ 101 (169)
T 2y1l_E 36 NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAV-------------DHAGMTPLRLAALFGHLEIVEVLLK 101 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 345677889999999999999999999999999 89998877 6899999999999999999999999
Q ss_pred hcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCC
Q 006944 110 ESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATD 186 (624)
Q Consensus 110 ~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~g 186 (624)
+ |++++.+ +..|.||||+|+..|+ .++|++|+++|+|++.+|..|.||||+|+. .+..+++++|++.|
T Consensus 102 ~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~----~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 102 N-GADVNAN-DMEGHTPLHLAAMFGH---LEIVEVLLKNGADVNAQDKFGKTAFDISID----NGNEDLAEILQKLN 169 (169)
T ss_dssp T-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHTC-
T ss_pred c-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----hCCHHHHHHHHHcC
Confidence 9 9999998 9999999999999999 999999999999999999999999999999 45567788887764
No 58
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=5.2e-23 Score=181.09 Aligned_cols=126 Identities=33% Similarity=0.448 Sum_probs=118.2
Q ss_pred cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccC
Q 006944 40 DAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSC 119 (624)
Q Consensus 40 dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~ 119 (624)
+|.|+||.|+..|+.++|+.|++ .|++++.. +..|.||||+|+..|+.+++++|++. |++++.+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~- 64 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAK-------------DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK- 64 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCccHHHHHHHcCcHHHHHHHHH-cCCCCCCc-------------CCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCccc-
Confidence 58899999999999999999999 78888876 68999999999999999999999998 9999998
Q ss_pred CCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCC
Q 006944 120 GNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGS 188 (624)
Q Consensus 120 d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gad 188 (624)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .+..+++++|+++|++
T Consensus 65 ~~~g~t~l~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 65 DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAAR----NGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHTCC
T ss_pred CCCCCcHHHHHHHcCh---HHHHHHHHHcCCCCcccCCCCCCHHHHHHH----cCcHHHHHHHHHcCCC
Confidence 9999999999999999 999999999999999999999999999998 5567888999988875
No 59
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.89 E-value=3.5e-23 Score=191.43 Aligned_cols=135 Identities=20% Similarity=0.211 Sum_probs=123.6
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHH
Q 006944 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILS 109 (624)
Q Consensus 30 ~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe 109 (624)
...+++..+..|.|+||.|+. |+.++++.|++ .|++++.. |..|.||||+|+..|+.++|++|++
T Consensus 27 ~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~ 91 (162)
T 1ihb_A 27 NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLK-------------DRTGFAVIHDAARAGFLDTLQTLLE 91 (162)
T ss_dssp SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 345677889999999999999 99999999999 89999877 6899999999999999999999999
Q ss_pred hcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCC-CCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCC
Q 006944 110 ESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGAD-PNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGS 188 (624)
Q Consensus 110 ~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD-~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gad 188 (624)
+ |+++|.+ +.+|.||||+|+..|+ .++|++|+++|++ ++.+|..|.||||+|+. .+..+++++|+++|++
T Consensus 92 ~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 92 F-QADVNIE-DNEGNLPLHLAAKEGH---LRVVEFLVKHTASNVGHRNHKGDTACDLARL----YGRNEVVSLMQANGAG 162 (162)
T ss_dssp T-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTC--
T ss_pred c-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHccCCCCCCcCCCCCcHHHHHHH----cCCHHHHHHHHHhCCC
Confidence 8 9999999 9999999999999999 9999999999998 69999999999999998 5567899999999875
No 60
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=1.8e-23 Score=202.35 Aligned_cols=151 Identities=12% Similarity=0.071 Sum_probs=132.4
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCH----HHHHHHHHhcCCCcc
Q 006944 41 AFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSI----DIIRLILSESGADVN 116 (624)
Q Consensus 41 g~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~----dIVklLLe~~GADVN 116 (624)
++++|+.||..|+++.|+.++. .+ ++..+ +..|+||||+|+..|+. ++|++||++ |||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~-~~--~~~~~------------~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn 69 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFE-KG--YEDKE------------SVLKSNILYDVLRNNNDEARYKISMFLINK-GADIK 69 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHH-HS--SSCHH------------HHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSS
T ss_pred cccHHHHHHHcCCHHHHHHHHh-cC--ccccc------------ccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCC
Confidence 5688999999999999999998 33 34432 37799999999999985 599999999 99999
Q ss_pred ccCCCCCChHHHHHHhCCCCCh---HHHHHHHHHCCCCCCCcCCCCC-cHHHHHhcCCCh-hhHHHHHHHHHH-CCCCCc
Q 006944 117 LSCGNDKSTALHCAASGGALNA---VDVVKLLLAAGADPNFVDAKGH-HPVDVIVVPPKF-QDVRLTLEELLA-TDGSVE 190 (624)
Q Consensus 117 ~~~d~~G~TpLH~AA~~G~~~~---~eiVklLL~~GAD~n~~D~~G~-TPLhlAa~~g~~-~~~~~lLe~LL~-~gadv~ 190 (624)
.+ +.+|+||||+|+..|+.+. .++|++||++|||+|.+|..|+ ||||+|+..+.. .....++++|++ .|++++
T Consensus 70 ~~-d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 70 SR-TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp CC-CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred CC-CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 99 9999999999999887432 5889999999999999999999 999999985543 456789999999 999999
Q ss_pred ccccccccccCCCCChhhhhhhcCC
Q 006944 191 RNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 191 ~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
..+..|.|||++|.+.|.
T Consensus 149 -------~~d~~G~TpL~~A~~~~~ 166 (186)
T 3t8k_A 149 -------IKDKWGLTALEFVKRCQK 166 (186)
T ss_dssp -------CCCTTSCCHHHHHHTTTC
T ss_pred -------ccCCCCCCHHHHHHHcCC
Confidence 889999999999999884
No 61
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.89 E-value=5.9e-23 Score=220.28 Aligned_cols=153 Identities=25% Similarity=0.341 Sum_probs=128.1
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006944 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~G 112 (624)
+++..++.|.||||.||..|++++|++|++ .|+++|.. +..|.||||+||..|+.++|++||++ |
T Consensus 6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------~~~~~t~L~~A~~~g~~~~v~~Ll~~-g 70 (437)
T 1n11_A 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQ-RGASPNVS-------------NVKVETPLHMAARAGHTEVAKYLLQN-K 70 (437)
T ss_dssp ---------CCHHHHHHHHTCHHHHHHHHH-TTCCSCCS-------------SSCCCCHHHHHHHHTCHHHHHHHHHH-T
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHhC-C
Confidence 567788999999999999999999999999 89999876 57889999999999999999999988 8
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccc
Q 006944 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERN 192 (624)
Q Consensus 113 ADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~ 192 (624)
+++|.+ +.+|.||||+|+..|+ .++|++|+++|++++..|..|.||||+|+. .+..++++.|++.+++..
T Consensus 71 ~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~~~~~~-- 140 (437)
T 1n11_A 71 AKVNAK-AKDDQTPLHCAARIGH---TNMVKLLLENNANPNLATTAGHTPLHIAAR----EGHVETVLALLEKEASQA-- 140 (437)
T ss_dssp CCSSCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCSC--
T ss_pred CCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHhCCCCCCCCCCCCCcHHHHHHH----cCCHHHHHHHHhCCCCCc--
Confidence 999988 8899999999999999 999999999999999999999999999998 555677888888888776
Q ss_pred ccccccccCCCCChhhhhhhcCC
Q 006944 193 LRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 193 ~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
..+..|.|||++|+..|.
T Consensus 141 -----~~~~~g~t~L~~A~~~g~ 158 (437)
T 1n11_A 141 -----CMTKKGFTPLHVAAKYGK 158 (437)
T ss_dssp -----CCCTTSCCHHHHHHHTTC
T ss_pred -----CCCCCCCCHHHHHHHcCC
Confidence 556778888888888873
No 62
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.89 E-value=1.9e-23 Score=213.78 Aligned_cols=133 Identities=20% Similarity=0.160 Sum_probs=91.1
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhc
Q 006944 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSES 111 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~ 111 (624)
.+++.+|.+|.||||.||..|+.++|+.||+ .|+++|.. +|+||||+|+..|+.++|++||++
T Consensus 22 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~---------------~g~t~L~~A~~~g~~~~v~~Ll~~- 84 (285)
T 3kea_A 22 KDTFKADVHGHSASYYAIADNNVRLVCTLLN-AGALKNLL---------------ENEFPLHQAATLEDTKIVKILLFS- 84 (285)
T ss_dssp TTTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTGGGSCC---------------TTCCHHHHHTTSSSCHHHHHHHHT-
T ss_pred CCCCccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCC---------------CCCCHHHHHHHcCCHHHHHHHHHC-
Confidence 3688999999999999999999999999999 89988864 355666666666666666666655
Q ss_pred CCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCC-CcHHHHHhcCCChhhHHHHHHHHHHCCCCC
Q 006944 112 GADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKG-HHPVDVIVVPPKFQDVRLTLEELLATDGSV 189 (624)
Q Consensus 112 GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G-~TPLhlAa~~g~~~~~~~lLe~LL~~gadv 189 (624)
|+++|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..| .||||+|+. .+..+++++|++.|++.
T Consensus 85 ga~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~----~~~~~~v~~Ll~~g~~~ 155 (285)
T 3kea_A 85 GLDDSQF-DDKGNTALYYAVDSGN---MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM----LNDVSIVSYFLSEIPST 155 (285)
T ss_dssp TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHH----TTCHHHHHHHHTTSCTT
T ss_pred CCCCCCc-CCCCCcHHHHHHHcCC---HHHHHHHHhcCCCCCccCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCcc
Confidence 5666655 5566666666666666 666666666666666666666 566666665 23344555555555444
No 63
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.89 E-value=8.2e-23 Score=190.18 Aligned_cols=132 Identities=26% Similarity=0.277 Sum_probs=120.2
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhc
Q 006944 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSES 111 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~ 111 (624)
.+++..+..|.|+||.|+..|+.++|+.|++ .|++++.. |.+|+||||+|+..|+.++|++|+++
T Consensus 33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~- 97 (165)
T 3twr_A 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAK-------------DKGGLVPLHNACSYGHYEVAELLVKH- 97 (165)
T ss_dssp TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred CCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCcc-------------CCCCCCHHHHHHHcCcHHHHHHHHhC-
Confidence 4556667788999999999999999999999 89999887 68999999999999999999999999
Q ss_pred CCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCC
Q 006944 112 GADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDG 187 (624)
Q Consensus 112 GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~ga 187 (624)
|+++|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. +..+++++|++.|+
T Consensus 98 g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-----~~~~i~~~L~~~gA 164 (165)
T 3twr_A 98 GAVVNVA-DLWKFTPLHEAAAKGK---YEICKLLLQHGADPTKKNRDGNTPLDLVKD-----GDTDIQDLLRGDAA 164 (165)
T ss_dssp TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-----TCHHHHHHHHTC--
T ss_pred CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCChhHhHhc-----CChHHHHHHhhccc
Confidence 9999999 9999999999999999 999999999999999999999999999775 34488999998875
No 64
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.88 E-value=2e-22 Score=207.13 Aligned_cols=159 Identities=23% Similarity=0.230 Sum_probs=122.4
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHH
Q 006944 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILS 109 (624)
Q Consensus 30 ~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe 109 (624)
...+++..+.+|.||||.|+..|+.++|+.||+ .|++++.. |..|.||||+|+..|+.++|++||+
T Consensus 80 ~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 80 HGADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAM-------------DLWQFTPLHEAASKNRVEVCSLLLS 145 (351)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 345677888999999999999999999999999 88888876 5778888888888888888888887
Q ss_pred hcCCCcccc-----------------------------------------------------CCCCCChHHHHHHhCCCC
Q 006944 110 ESGADVNLS-----------------------------------------------------CGNDKSTALHCAASGGAL 136 (624)
Q Consensus 110 ~~GADVN~~-----------------------------------------------------~d~~G~TpLH~AA~~G~~ 136 (624)
+ |++++.. .+..|.||||+|+..++.
T Consensus 146 ~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~ 224 (351)
T 3utm_A 146 H-GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHP 224 (351)
T ss_dssp T-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCST
T ss_pred c-CCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCc
Confidence 7 7777653 124567888888877655
Q ss_pred ChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006944 137 NAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 137 ~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
+..+++++|++.|++++.+|..|+||||+|+. .+..+++++|++.|++++ ..+..|.||||+|+..|
T Consensus 225 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~ga~~n-------~~d~~g~t~L~~A~~~~ 291 (351)
T 3utm_A 225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAE----RAHNDVMEVLHKHGAKMN-------ALDSLGQTALHRAALAG 291 (351)
T ss_dssp THHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------CCCTTSCCHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC-------CcCCCCCCHHHHHHHcC
Confidence 55778888888888888888888888888887 344467777777777777 56667777777776654
No 65
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.88 E-value=2.4e-22 Score=200.13 Aligned_cols=155 Identities=25% Similarity=0.262 Sum_probs=136.8
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcccc
Q 006944 39 DDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLS 118 (624)
Q Consensus 39 ~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~ 118 (624)
.+|.|+||.|+..|++++|+.|++ .|.+++... +..|.||||+|+..|+.++|++||++ |++++..
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~ 68 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQE------------EEGGWTPLHNAVQMSREDIVELLLRH-GADPVLR 68 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCC------------TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred cccchHHHHHHHcCCHHHHHHHHH-cCCCccccc------------CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCccc
Confidence 468999999999999999999999 899998764 67899999999999999999999999 9999998
Q ss_pred CCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccccc---c
Q 006944 119 CGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLR---V 195 (624)
Q Consensus 119 ~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~---l 195 (624)
+.+|.||||+|+..|+ .++|++|+++|++++..|..|+||||+|+.. +..+++++|++.|++++.... .
T Consensus 69 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~~~~Ll~~g~~~~~~~~~~~~ 140 (285)
T 1wdy_A 69 -KKNGATPFLLAAIAGS---VKLLKLFLSKGADVNECDFYGFTAFMEAAVY----GKVKALKFLYKRGANVNLRRKTKED 140 (285)
T ss_dssp -CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT----TCHHHHHHHHHTTCCTTCCCCCCHH
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCcccCCHHHHHHHh----CCHHHHHHHHHhCCCcccccccHHH
Confidence 9999999999999999 9999999999999999999999999999994 456789999999998872110 0
Q ss_pred cccccCCCCChhhhhhhcCC
Q 006944 196 STTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 196 ~~a~~~~g~TpL~lAle~Gs 215 (624)
....+..|.|||++|+..|.
T Consensus 141 ~~~~~~~g~t~L~~A~~~~~ 160 (285)
T 1wdy_A 141 QERLRKGGATALMDAAEKGH 160 (285)
T ss_dssp HHHTTCCCCCHHHHHHHHTC
T ss_pred HHhhccCCCcHHHHHHHcCC
Confidence 11126789999999999884
No 66
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.88 E-value=5.9e-23 Score=204.58 Aligned_cols=149 Identities=19% Similarity=0.158 Sum_probs=129.0
Q ss_pred ChHHHHHHHHcCCHHHH----HHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhc---CCHHHHHHHHHhcCC
Q 006944 41 AFASLLELAANNDVEGF----KRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATY---GSIDIIRLILSESGA 113 (624)
Q Consensus 41 g~TpLh~AA~~Gdle~V----k~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~---G~~dIVklLLe~~GA 113 (624)
|.|+||.||..|+.+.| +.|++ .|+++|... ...|.+|+||||+||.. |+.++|++||+. |+
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~---------~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~ 70 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRW-NSKYLTDSA---------YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DK 70 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGG---------GSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HH
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHH-cCCCccccc---------ccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CC
Confidence 78999999999999855 55555 788888711 01278999999999999 999999999998 88
Q ss_pred CccccC----------CCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCC-------------CCcHHHHHhcCC
Q 006944 114 DVNLSC----------GNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAK-------------GHHPVDVIVVPP 170 (624)
Q Consensus 114 DVN~~~----------d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~-------------G~TPLhlAa~~g 170 (624)
+++... +..|.||||+|+..|+ .++|++||++|++++.+|.. |+||||+|+.
T Consensus 71 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~-- 145 (256)
T 2etb_A 71 DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS---LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC-- 145 (256)
T ss_dssp HTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHH--
T ss_pred cccchhhhcccccccccccCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHH--
Confidence 877431 3679999999999999 99999999999999999987 9999999999
Q ss_pred ChhhHHHHHHHHHH---CCCCCcccccccccccCCCCChhhhhhhcC
Q 006944 171 KFQDVRLTLEELLA---TDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 171 ~~~~~~~lLe~LL~---~gadv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
.+..+++++|++ .|++++ ..+..|.||||+|+..|
T Consensus 146 --~~~~~~v~~Ll~~~~~ga~~n-------~~d~~g~TpLh~A~~~~ 183 (256)
T 2etb_A 146 --TKQWDVVTYLLENPHQPASLE-------ATDSLGNTVLHALVMIA 183 (256)
T ss_dssp --TTCHHHHHHHHHCSSCCCCTT-------CCCTTSCCHHHHHHHHC
T ss_pred --cCCHHHHHHHHhccccCCCcC-------ccCCCCCCHHHHHHHcc
Confidence 456689999999 899998 78889999999999844
No 67
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=1.7e-22 Score=179.80 Aligned_cols=119 Identities=27% Similarity=0.384 Sum_probs=108.6
Q ss_pred CccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccc
Q 006944 38 TDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNL 117 (624)
Q Consensus 38 d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~ 117 (624)
+..|.|+||.|+..|+.++|+.|++ .|+++|.. |..|+||||+|+..|+.++|++||+. |+++|.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~ 68 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRT-------------LEGGRKPLHYAADCGQLEILEFLLLK-GADINA 68 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSC-------------CTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTC
T ss_pred ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCcc-------------CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCc
Confidence 4568899999999999999999999 88998877 68999999999999999999999988 999999
Q ss_pred cCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHH
Q 006944 118 SCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTL 179 (624)
Q Consensus 118 ~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lL 179 (624)
+ +..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+|.. ....+++
T Consensus 69 ~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~----~~~~~ll 122 (123)
T 3aaa_C 69 P-DKHHITPLLSAVYEGH---VSCVKLLLSKGADKTVKGPDGLTAFEATDN----QAIKALL 122 (123)
T ss_dssp C-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCC----HHHHHHH
T ss_pred C-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHhCC----HHHHHHh
Confidence 9 9999999999999999 999999999999999999999999999976 5555554
No 68
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.88 E-value=4.6e-23 Score=205.06 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=129.1
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhc
Q 006944 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSES 111 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~ 111 (624)
.+++. +..+.|+||.|+..|++++|+.||+ .|+++|.. |.+|+||||+||..|+.++|++||++
T Consensus 29 ~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~- 92 (239)
T 1ycs_B 29 MRVKF-NPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLP-------------NDEGITALHNAVCAGHTEIVKFLVQF- 92 (239)
T ss_dssp ---------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHH-
T ss_pred CCccc-CchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-
Confidence 34443 3678999999999999999999998 88899887 68999999999999999999999999
Q ss_pred CCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCC-cHHHHH--hcCCChhhHHHHHHHHHHCCCC
Q 006944 112 GADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGH-HPVDVI--VVPPKFQDVRLTLEELLATDGS 188 (624)
Q Consensus 112 GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~-TPLhlA--a~~g~~~~~~~lLe~LL~~gad 188 (624)
|+++|.+ |..|+||||+|+..|+ .++|++||++|+|++.+|..|. ||||+| +..|+ .+++++|++.+++
T Consensus 93 ga~~~~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~----~~~~~~Ll~~~a~ 164 (239)
T 1ycs_B 93 GVNVNAA-DSDGWTPLHCAASCNN---VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY----TQCSQFLYGVQEK 164 (239)
T ss_dssp TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTC----CCHHHHHHHHHHH
T ss_pred CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhcc----HHHHHHHHHhhhc
Confidence 9999999 9999999999999999 9999999999999999998887 999999 55444 4566666666666
Q ss_pred Ccc--cccccccccCCCCChhhhhhhcCC
Q 006944 189 VER--NLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 189 v~~--~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
++. ........+..+.++++++.+.|.
T Consensus 165 ~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 165 MGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp TTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred ccccccceEEEEeccCCCCCCcccccCCC
Confidence 551 111122336677888888888884
No 69
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.88 E-value=3.4e-22 Score=186.32 Aligned_cols=134 Identities=24% Similarity=0.315 Sum_probs=121.6
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006944 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~ 110 (624)
..+++..+..|.|+||.|+..|+.++|+.|++ .|++++.. +..|.||||+|+..|+.++|++|+++
T Consensus 26 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 91 (167)
T 3v31_A 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLL-------------GKGRESALSLACSKGYTDIVKMLLDC 91 (167)
T ss_dssp SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCc-------------CCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 45688889999999999999999999999999 79999877 68999999999999999999999999
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCC
Q 006944 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDG 187 (624)
Q Consensus 111 ~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~ga 187 (624)
|++++.+ +..|.||||+|+..|+ .++|++|+++|+|++.+|..|.||||+|+..| ..+++++|+++++
T Consensus 92 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~----~~~~~~~L~~~~~ 159 (167)
T 3v31_A 92 -GVDVNEY-DWNGGTPLLYAVHGNH---VKCVKMLLESGADPTIETDSGYNSMDLAVALG----YRSVQQVIESHLL 159 (167)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT----CHHHHHHHHHHHH
T ss_pred -CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC----cHHHHHHHHHHHH
Confidence 9999999 9999999999999999 99999999999999999999999999999954 4555555555543
No 70
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.88 E-value=3.6e-22 Score=194.25 Aligned_cols=153 Identities=24% Similarity=0.251 Sum_probs=124.5
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCC
Q 006944 34 LTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGA 113 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GA 113 (624)
++..|+.+.++|+.|+..|++++|+.|++ .|++++.. +..|.||||+|+..|+.++|++|+++ |+
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~ 66 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVE-AGYDVRQP-------------DKENVTLLHWAAINNRIDLVKYYISK-GA 66 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHH-cCCCcCCC-------------CCCCCCHHHHHHHhCCHHHHHHHHHc-CC
Confidence 45567778888888888888888888888 78888776 57788888888888888888888888 78
Q ss_pred CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccc
Q 006944 114 DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNL 193 (624)
Q Consensus 114 DVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~ 193 (624)
+++...+..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+.. +..+++++|++.|++++
T Consensus 67 ~~~~~~~~~~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~----~~~~~~~~Ll~~~~~~~--- 136 (240)
T 3eu9_A 67 IVDQLGGDLNSTPLHWATRQGH---LSMVVQLMKYGADPSLIDGEGCSCIHLAAQF----GHTSIVAYLIAKGQDVD--- 136 (240)
T ss_dssp CTTCCBTTTTBCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCTT---
T ss_pred cchhhcCCcCCChhHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHc----CHHHHHHHHHhcCCCcc---
Confidence 8886645568888888888888 8888888888888888888888888888884 44567888888888777
Q ss_pred cccccccCCCCChhhhhhhcCC
Q 006944 194 RVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 194 ~l~~a~~~~g~TpL~lAle~Gs 215 (624)
..+..|.|||++|+..|.
T Consensus 137 ----~~~~~g~t~l~~a~~~~~ 154 (240)
T 3eu9_A 137 ----MMDQNGMTPLMWAAYRTH 154 (240)
T ss_dssp ----CCCTTSCCHHHHHHHHCC
T ss_pred ----ccCCCCCcHHHHHHHhCC
Confidence 566778888888886663
No 71
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.88 E-value=4.2e-23 Score=205.32 Aligned_cols=145 Identities=21% Similarity=0.220 Sum_probs=101.4
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcccc
Q 006944 39 DDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLS 118 (624)
Q Consensus 39 ~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~ 118 (624)
..|.|+||.|+..|+.+.++.||+ .|++++.. ..|.||||+|+..|+.++|++||+. |+++|.+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~--------------~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~ 66 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIA-HGMRVKFN--------------PLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLP 66 (239)
T ss_dssp -------------------------------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCC
T ss_pred ccccccCchhhhhhhHHHHHHHhc-cCCCcccC--------------chhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCc
Confidence 458999999999999999999999 99999853 6789999999999999999999988 8999999
Q ss_pred CCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccccccccc
Q 006944 119 CGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTT 198 (624)
Q Consensus 119 ~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a 198 (624)
+..|.||||+|+..|+ .++|++||++|+|++.+|..|+||||+|+. .+..+++++|+++|++++ .
T Consensus 67 -d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~-------~ 131 (239)
T 1ycs_B 67 -NDEGITALHNAVCAGH---TEIVKFLVQFGVNVNAADSDGWTPLHCAAS----CNNVQVCKFLVESGAAVF-------A 131 (239)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------C
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc-------e
Confidence 9999999999999999 999999999999999999999999999998 455679999999999998 5
Q ss_pred ccCCCC-Chhhhh--hhcC
Q 006944 199 TSNSNS-PPLSPA--LENG 214 (624)
Q Consensus 199 ~~~~g~-TpL~lA--le~G 214 (624)
.+..+. |||++| +.+|
T Consensus 132 ~~~~~~~t~l~~a~~~~~g 150 (239)
T 1ycs_B 132 MTYSDMQTAADKCEEMEEG 150 (239)
T ss_dssp CCSSSCCCHHHHCCSSSTT
T ss_pred ecCCCCcchHHHHHHhhhc
Confidence 555555 999988 5555
No 72
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.88 E-value=1.8e-22 Score=192.74 Aligned_cols=133 Identities=22% Similarity=0.234 Sum_probs=121.2
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006944 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~ 110 (624)
..+++..+..|.||||.|+..|+.++++.|++ .|++++.. |..|.||||+|+..|+.++|++|+++
T Consensus 58 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (192)
T 2rfm_A 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTK-------------DFSGKTPLMWSIIFGYSEMSYFLLEH 123 (192)
T ss_dssp HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred ccccccccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 34677888999999999999999999999999 78998877 68999999999999999999999999
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCC
Q 006944 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATD 186 (624)
Q Consensus 111 ~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~g 186 (624)
|++++.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+..| ..+++++|++.+
T Consensus 124 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~----~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 124 -GANVNDR-NLEGETPLIVASKYGR---SEIVKKLLELGADISARDLTGLTAEASARIFG----RQEVIKIFTEVR 190 (192)
T ss_dssp -TCCSSCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT----CHHHHHHHHHHH
T ss_pred -CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhC----cHHHHHHHHhcc
Confidence 9999999 9999999999999999 99999999999999999999999999999954 455666666543
No 73
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.88 E-value=7.1e-23 Score=206.23 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=132.3
Q ss_pred cccCccChHHHHHHHHcCCHHHHHHHHh---cCCCCCcccccccccccCCccccCCCCchHHHHHhc---CCHHHHHHHH
Q 006944 35 TVETDDAFASLLELAANNDVEGFKRSIV---CDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATY---GSIDIIRLIL 108 (624)
Q Consensus 35 ni~d~dg~TpLh~AA~~Gdle~Vk~LLe---~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~---G~~dIVklLL 108 (624)
+..+..|.|+||.||..|++++|+.||+ ..+.+++... ...|..|+||||+||.. |+.++|++||
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---------~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll 77 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE---------FKDPETGKTCLLKAMLNLHNGQNDTIALLL 77 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG---------GSCTTTCCCHHHHHHHSCBTTBCHHHHHHH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc---------cccCcCCCCHHHHHHHHHhcCChHHHHHHH
Confidence 4578889999999999999999999987 3566665421 12368999999999987 9999999999
Q ss_pred HhcCCC-------ccc----cCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCC--------------CCCcHH
Q 006944 109 SESGAD-------VNL----SCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDA--------------KGHHPV 163 (624)
Q Consensus 109 e~~GAD-------VN~----~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~--------------~G~TPL 163 (624)
++ |++ +|. . +..|.||||+|+..|+ .++|++||++|++++.+|. .|+|||
T Consensus 78 ~~-ga~~~~~~~~i~~~~~~~-d~~g~tpL~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL 152 (273)
T 2pnn_A 78 DV-ARKTDSLKQFVNASYTDS-YYKGQTALHIAIERRN---MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPL 152 (273)
T ss_dssp HH-HHHTTCHHHHHTCCCCST-TTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHH
T ss_pred Hh-hccccchhHHhhcccccc-cCCCCCHHHHHHHcCC---HHHHHHHHHCCCCcCccccccccccccccccccCCCCHH
Confidence 98 766 333 3 5689999999999999 9999999999999999997 799999
Q ss_pred HHHhcCCChhhHHHHHHHHHH---CCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 164 DVIVVPPKFQDVRLTLEELLA---TDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 164 hlAa~~g~~~~~~~lLe~LL~---~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
|+|+. .+..+++++|++ .|++++ ..+..|.||||+|++.|.
T Consensus 153 ~~A~~----~g~~~~v~~Ll~~~~~gad~~-------~~d~~g~tpLh~A~~~~~ 196 (273)
T 2pnn_A 153 SLAAC----TNQLAIVKFLLQNSWQPADIS-------ARDSVGNTVLHALVEVAD 196 (273)
T ss_dssp HHHHH----TTCHHHHHHHHHCSSCCCCTT-------CCCTTSCCHHHHHHHHCC
T ss_pred HHHHH----cCCHHHHHHHHhcccCCCCce-------eeCCCCCcHHHHHHHccC
Confidence 99999 556689999999 899998 788899999999999884
No 74
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.88 E-value=4.9e-22 Score=193.27 Aligned_cols=157 Identities=24% Similarity=0.267 Sum_probs=110.0
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHH
Q 006944 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILS 109 (624)
Q Consensus 30 ~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe 109 (624)
...+++..+..|.|+||.|+..|+.++|+.|++ .|.+++... +..|.||||+|+..|+.++|++|++
T Consensus 31 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~------------~~~~~t~L~~A~~~~~~~~v~~Ll~ 97 (240)
T 3eu9_A 31 AGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLG------------GDLNSTPLHWATRQGHLSMVVQLMK 97 (240)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCB------------TTTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH-cCCcchhhc------------CCcCCChhHHHHHcCCHHHHHHHHH
Confidence 345677888899999999999999999999999 888877653 4456777777777777777777776
Q ss_pred hcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCC
Q 006944 110 ESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSV 189 (624)
Q Consensus 110 ~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv 189 (624)
. |++++.. +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+..++ ...++++|++.++++
T Consensus 98 ~-g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~~L~~~~~~~ 169 (240)
T 3eu9_A 98 Y-GADPSLI-DGEGCSCIHLAAQFGH---TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH---SVDPTRLLLTFNVSV 169 (240)
T ss_dssp T-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC---SSTTHHHHHHTTCCT
T ss_pred c-CCCCccc-CCCCCCHHHHHHHcCH---HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC---hHHHHHHHHhcCCCc
Confidence 6 6777776 6677777777777777 777777777777777777777777777774222 134455556666655
Q ss_pred cccccccccccC-CCCChhhhhhhcC
Q 006944 190 ERNLRVSTTTSN-SNSPPLSPALENG 214 (624)
Q Consensus 190 ~~~~~l~~a~~~-~g~TpL~lAle~G 214 (624)
+ ..+. .|.|||++|+..|
T Consensus 170 ~-------~~~~~~g~t~L~~A~~~~ 188 (240)
T 3eu9_A 170 N-------LGDKYHKNTALHWAVLAG 188 (240)
T ss_dssp T-------CCCTTTCCCHHHHHHHHT
T ss_pred c-------hhhccCCCcHHHHHHHcC
Confidence 5 2332 4555555555443
No 75
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=7.5e-23 Score=200.17 Aligned_cols=132 Identities=23% Similarity=0.309 Sum_probs=115.5
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcc
Q 006944 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVN 116 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN 116 (624)
.+.+|.|+||.||..|++++|+.||+ .|+++|.. |..|+||||+||..|+.++|++||+..|+++|
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~ 134 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGL-------------DKAGSTALYWACHGGHKDIVEMLFTQPNIELN 134 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC
T ss_pred cccccccccccccccCcHHHHHHHHh-CCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc
Confidence 35567899999999999999999999 89999877 68999999999999999999999987789999
Q ss_pred ccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006944 117 LSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 117 ~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
.+ +..|+||||+|+..|+ .++|++||++|++++.+|..|+||||+|+. .+..++++.|++.++...
T Consensus 135 ~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~----~~~~~~l~~l~~~~~~~~ 200 (222)
T 3ehr_A 135 QQ-NKLGDTALHAAAWKGY---ADIVQLLLAKGARTDLRNIEKKLAFDMATN----AACASLLKKKQGTDAVRT 200 (222)
T ss_dssp CC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCSCCCCTTSCCHHHHCCS----HHHHHHHC----------
T ss_pred cc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCHHHHhcc----hhHHHHHHHHhccchhhh
Confidence 99 9999999999999999 999999999999999999999999999998 889999999999988776
No 76
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.87 E-value=4.2e-22 Score=196.03 Aligned_cols=163 Identities=20% Similarity=0.104 Sum_probs=135.6
Q ss_pred cccCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHH
Q 006944 28 NVDMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLI 107 (624)
Q Consensus 28 ~~~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklL 107 (624)
+....+++..+..|.||||.|+..|+.++++.|++ .+.+.+... ..+..+..|.||||+|+..|+.++|++|
T Consensus 65 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~-------~~~~~~~~g~t~L~~A~~~~~~~~v~~L 136 (236)
T 1ikn_D 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ-SCTTPHLHS-------ILKATNYNGHTCLHLASIHGYLGIVELL 136 (236)
T ss_dssp CSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHH-STTTTSSSC-------GGGCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhHHH-------HhhccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 34445788889999999999999999999999999 776643221 1234478899999999999999999999
Q ss_pred HHhcCCCccccCCC-CCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCC
Q 006944 108 LSESGADVNLSCGN-DKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATD 186 (624)
Q Consensus 108 Le~~GADVN~~~d~-~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~g 186 (624)
|++ |++++.+ +. .|.||||+|+..|+ .++|++||++|+|++.+|..|+||||+|+. .+..+++++|+++|
T Consensus 137 l~~-g~~~~~~-~~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~----~~~~~~~~~Ll~~g 207 (236)
T 1ikn_D 137 VSL-GADVNAQ-EPCNGRTALHLAVDLQN---PDLVSLLLKCGADVNRVTYQGYSPYQLTWG----RPSTRIQQQLGQLT 207 (236)
T ss_dssp HHH-TCCTTCC-CTTTCCCHHHHHHHTTC---HHHHHHHHTTTCCSCCCCTTCCCGGGGCTT----SSCHHHHHHHHTTS
T ss_pred HHc-CCCCCCC-CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcccCCCCCHHHHHHc----cCchHHHHHHHHcc
Confidence 999 9999998 76 99999999999999 999999999999999999999999999998 55678999999999
Q ss_pred CCCcccccccccccCCCCChhhhhhh
Q 006944 187 GSVERNLRVSTTTSNSNSPPLSPALE 212 (624)
Q Consensus 187 adv~~~~~l~~a~~~~g~TpL~lAle 212 (624)
++.. ....+..+.|+...+.+
T Consensus 208 a~~~-----~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 208 LENL-----QMLPESEDEESYDTESE 228 (236)
T ss_dssp CGGG-----SSCCCCCTTTCCCCC--
T ss_pred hhhh-----hcCCccchHHHHhhhcc
Confidence 8765 12344555666555443
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.87 E-value=4.3e-22 Score=183.62 Aligned_cols=123 Identities=27% Similarity=0.236 Sum_probs=113.6
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcc
Q 006944 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVN 116 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN 116 (624)
.+..|.|+||.|+..|+.++++.|++ .|++++.. |..|.||||+|+..|+.++|++|+++ |++++
T Consensus 30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~ 94 (153)
T 1awc_B 30 TDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDAR-------------TKVDRTPLHMAASEGHANIVEVLLKH-GADVN 94 (153)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcChHHHHHHHHHc-CCCCC
Confidence 47789999999999999999999999 89998877 68899999999999999999999998 99999
Q ss_pred ccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHH
Q 006944 117 LSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEEL 182 (624)
Q Consensus 117 ~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~L 182 (624)
.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+..|+ .+++++|
T Consensus 95 ~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~i~~~L 152 (153)
T 1awc_B 95 AK-DMLKMTALHWATEHNH---QEVVELLIKYGADVHTQSKFCKTAFDISIDNGN----EDLAEIL 152 (153)
T ss_dssp CC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHH
T ss_pred CC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC----HHHHHHh
Confidence 99 9999999999999999 999999999999999999999999999999544 4455544
No 78
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.87 E-value=3.2e-22 Score=207.50 Aligned_cols=161 Identities=23% Similarity=0.218 Sum_probs=129.8
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCC----HHHHHHHH
Q 006944 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGS----IDIIRLIL 108 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~----~dIVklLL 108 (624)
+....+..|.||||.||..|+.++|+.||++.|+++|.. |..|.|+||.++..+. ..++++||
T Consensus 160 ~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~-------------d~~g~t~l~~~~~~~~~~~~~~i~~lLl 226 (337)
T 4g8k_A 160 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC-------------DNMGRNALIHALLSSDDSDVEAITHLLL 226 (337)
T ss_dssp ----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCC-------------CTTSCCHHHHHHHHSCTTTHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCcc-------------CCCCCcHHHHHHHHcCcccHHHHHHHHH
Confidence 344567789999999999999999999998789999987 6899999998876554 46889999
Q ss_pred HhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHC-CCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCC
Q 006944 109 SESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA-GADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDG 187 (624)
Q Consensus 109 e~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~-GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~ga 187 (624)
++ |+|+|.+ +.+|+||||+|+..|+ .++|++|+.. |++++.+|..|+||||+|+. .+..+++++|+++|+
T Consensus 227 ~~-gad~n~~-d~~g~t~L~~a~~~~~---~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~----~g~~~iv~~Ll~~GA 297 (337)
T 4g8k_A 227 DH-GADVNVR-GERGKTPLILAVEKKH---LGLVQRLLEQEHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKRGA 297 (337)
T ss_dssp HT-TCCTTCC-CGGGCCHHHHHHHTTC---HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHTTSC
T ss_pred HC-CCCCCCc-CCCCCCHHHHHHHhhh---hHHHHHHHHhcCCcccCcCCCCCCHHHHHHH----cCCHHHHHHHHHCCC
Confidence 88 8999998 8999999999999999 9999999985 89999999999999999998 455678999999999
Q ss_pred CCcccccccccccCCCCChhhhhhhcCC
Q 006944 188 SVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 188 dv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
+++...+++.+........+.+++++|+
T Consensus 298 d~n~~~~L~~A~~~~~~~iv~~Ll~~GA 325 (337)
T 4g8k_A 298 STDCGDLVMTARRNYDHSLVKVLLSHGA 325 (337)
T ss_dssp SSTTCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCcC
Confidence 9884444444444444444444455554
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.87 E-value=4.2e-22 Score=183.39 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=117.4
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006944 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~G 112 (624)
+++..+..|.|+||. |..|+.++++.|++ .|++++.. |..|.||||+|+..|+.++|++|+++ |
T Consensus 28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g 91 (156)
T 1bd8_A 28 HPDALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQ-------------DTSGTSPVHDAARTGFLDTLKVLVEH-G 91 (156)
T ss_dssp CTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred CccccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-C
Confidence 677889999999999 99999999999999 89999887 68999999999999999999999998 8
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHH
Q 006944 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLA 184 (624)
Q Consensus 113 ADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~ 184 (624)
++++.+ +..|.||||+|+..|+ .++|++|++. ++++.+|..|.||||+|+..| ..+++++|++
T Consensus 92 ~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~----~~~~v~~Ll~ 154 (156)
T 1bd8_A 92 ADVNVP-DGTGALPIHLAVQEGH---TAVVSFLAAE-SDLHRRDARGLTPLELALQRG----AQDLVDILQG 154 (156)
T ss_dssp CCSCCC-CTTSCCHHHHHHHHTC---HHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSC----CHHHHHHHHT
T ss_pred CCCCCc-CCCCCcHHHHHHHhCh---HHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcC----cHHHHHHHHh
Confidence 999999 9999999999999999 9999999999 999999999999999999954 4556666654
No 80
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.87 E-value=1.2e-21 Score=190.18 Aligned_cols=151 Identities=17% Similarity=0.155 Sum_probs=127.9
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccccCCccccCCCCc
Q 006944 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQKGSKQMVNEQRT 90 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~r~~~~~~~D~~G~T 90 (624)
..+++..+..|.||||.|+..|+.++++.|++..+.+++..+ +++..+.+.+..|.+|.|
T Consensus 48 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 127 (223)
T 2f8y_A 48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 127 (223)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCB
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCc
Confidence 345666777778888888888888888888874443555432 344556667777899999
Q ss_pred hHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCC
Q 006944 91 PLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPP 170 (624)
Q Consensus 91 PLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g 170 (624)
|||+|+..|+.++|++||++ |++++.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|.|||++|+.
T Consensus 128 ~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~-- 200 (223)
T 2f8y_A 128 ALHWAAAVNNVDAAVVLLKN-GANKDMQ-NNREETPLFLAAREGS---YETAKVLLDHFANRDITDHMDRLPRDIAQE-- 200 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH--
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCcCHHHHHHHcCC---HHHHHHHHHcCCCCccccccCCCHHHHHHH--
Confidence 99999999999999999999 9999999 9999999999999999 999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHCCCCCc
Q 006944 171 KFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 171 ~~~~~~~lLe~LL~~gadv~ 190 (624)
.+..+++++|++.|+...
T Consensus 201 --~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 201 --RMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp --TTCHHHHHHHHHTTCSSC
T ss_pred --hcchHHHHHHHHcCCCcc
Confidence 566788999999998665
No 81
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=5.9e-22 Score=205.71 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=123.7
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhc---CCHHHHHHHHHhcCC
Q 006944 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATY---GSIDIIRLILSESGA 113 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~---G~~dIVklLLe~~GA 113 (624)
......++|+.|+..|+++.|+.||+ .|++++.... ....+..|+||||+||.. |+.++|++||++ |+
T Consensus 147 ~~~~~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~~-------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-ga 217 (301)
T 2b0o_E 147 RCTPEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLP-------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GG 217 (301)
T ss_dssp CCC-CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCEE-------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SS
T ss_pred ccCchHHHHhhhhhccCHHHHHHHHh-cCCcccccCC-------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CC
Confidence 34456788999999999999999998 9999987410 001368999999999997 899999999999 99
Q ss_pred CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccc
Q 006944 114 DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNL 193 (624)
Q Consensus 114 DVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~ 193 (624)
+||.+ |.+|+||||+|+..|+ .++|++||++|||++.+|..|+||||+|+. .+..+++++|++.|++
T Consensus 218 dvn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~----~~~~~iv~~Ll~~ga~----- 284 (301)
T 2b0o_E 218 HLDAK-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARK----KHHKECEELLEQAQAG----- 284 (301)
T ss_dssp CTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCCSCCCTTSCCHHHHHHH----HTCHHHHHHHHHHHHH-----
T ss_pred CCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCC-----
Confidence 99999 9999999999999999 999999999999999999999999999998 5566788888887754
Q ss_pred cccccccCCCCChhhhhhhcCC
Q 006944 194 RVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 194 ~l~~a~~~~g~TpL~lAle~Gs 215 (624)
.|.||||+|++.|.
T Consensus 285 --------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 285 --------TFAFPLHVDYSWVI 298 (301)
T ss_dssp --------TTSSCCC-------
T ss_pred --------CCCChhHHHHhcCC
Confidence 46899999999884
No 82
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.86 E-value=3.1e-22 Score=212.36 Aligned_cols=165 Identities=18% Similarity=0.233 Sum_probs=142.2
Q ss_pred CCCcccC-ccChHHHHHHHHcCCHHHHHHHHh-------cCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHH
Q 006944 32 NHLTVET-DDAFASLLELAANNDVEGFKRSIV-------CDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDI 103 (624)
Q Consensus 32 ~~ini~d-~dg~TpLh~AA~~Gdle~Vk~LLe-------~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dI 103 (624)
.+++..+ ..|.|+||+||..|+.++|+.||. +.|+++|.. |.+|.||||+|+..|+.++
T Consensus 115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~-------------d~~g~TpL~~A~~~g~~~i 181 (373)
T 2fo1_E 115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-------------DCDENTPLMLAVLARRRRL 181 (373)
T ss_dssp TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-------------CTTSCCHHHHHHHHTCHHH
T ss_pred ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC-------------CCCCCCHHHHHHHcChHHH
Confidence 4677777 789999999999999998888873 388888877 6899999999999999999
Q ss_pred HHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCC---CCCCCcCCCCCcHHHHHhcCCChhhHHHHHH
Q 006944 104 IRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG---ADPNFVDAKGHHPVDVIVVPPKFQDVRLTLE 180 (624)
Q Consensus 104 VklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~G---AD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe 180 (624)
|++||++ |++++.. +..|.||||+|+..|+ .++|++|++.| ++++..|..|.||||+|+..+. ....++++
T Consensus 182 v~~Ll~~-ga~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~-~~~~~~v~ 255 (373)
T 2fo1_E 182 VAYLMKA-GADPTIY-NKSERSALHQAAANRD---FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG-RDQVASAK 255 (373)
T ss_dssp HHHHHHT-TCCSCCC-CTTCCCHHHHHHHTTC---HHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCS-TTHHHHHH
T ss_pred HHHHHHC-CCCCccc-CCCCCCHHHHHHHCCC---HHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCC-cchHHHHH
Confidence 9999999 9999998 9999999999999999 99999999998 8999999999999999998432 12778999
Q ss_pred HHHHCCCCCccc-ccccccccCCCCChhhhhhhcCC
Q 006944 181 ELLATDGSVERN-LRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 181 ~LL~~gadv~~~-~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
+|++.|++++.. .......+..|.||||+|+..|.
T Consensus 256 ~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~ 291 (373)
T 2fo1_E 256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291 (373)
T ss_dssp HHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC
T ss_pred HHHHCCCCcccccccccCcccccCCCHHHHHHHhCC
Confidence 999999998721 11122356789999999998874
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.86 E-value=5e-22 Score=192.25 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=116.8
Q ss_pred CcccC-ccChHHHHHHHHcCCH----HHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCC------HH
Q 006944 34 LTVET-DDAFASLLELAANNDV----EGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGS------ID 102 (624)
Q Consensus 34 ini~d-~dg~TpLh~AA~~Gdl----e~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~------~d 102 (624)
++..+ ..|.||||.|+..|+. ++++.||+ .|++||.. |.+|+||||+|+..|+ .+
T Consensus 30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~-------------d~~g~TpLh~a~~~~~~~~~~~~~ 95 (186)
T 3t8k_A 30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSR-------------TKEGTTLFFPLFQGGGNDITGTTE 95 (186)
T ss_dssp SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCC-------------CTTCCCTHHHHHHHCTTCHHHHHH
T ss_pred cccccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCcchhhHHH
Confidence 33444 7799999999999986 48999999 99999988 6999999999999997 68
Q ss_pred HHHHHHHhcCCCccccCCCCCC-hHHHHHHhCCCC--ChHHHHHHHHH-CCCCCCCcCCCCCcHHHHHhcCCChhhHHHH
Q 006944 103 IIRLILSESGADVNLSCGNDKS-TALHCAASGGAL--NAVDVVKLLLA-AGADPNFVDAKGHHPVDVIVVPPKFQDVRLT 178 (624)
Q Consensus 103 IVklLLe~~GADVN~~~d~~G~-TpLH~AA~~G~~--~~~eiVklLL~-~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~l 178 (624)
+|++||++ |||||.+ |..|. ||||+|+..+.. ...++|++||+ +|+|++.+|..|+||||+|+..|+...++.+
T Consensus 96 iv~~Ll~~-Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L 173 (186)
T 3t8k_A 96 LCKIFLEK-GADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173 (186)
T ss_dssp HHHHHHHT-TCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHC-CCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 89999999 9999999 99999 999999996541 12579999999 9999999999999999999997776666666
Q ss_pred HHHHHHCC
Q 006944 179 LEELLATD 186 (624)
Q Consensus 179 Le~LL~~g 186 (624)
.+++.+.+
T Consensus 174 ~~~~~~~~ 181 (186)
T 3t8k_A 174 EDYIKKYN 181 (186)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 66555444
No 84
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.86 E-value=6.8e-22 Score=197.03 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=130.3
Q ss_pred CccChHHHHHHHHcCCHHHHHHHHh---cCCCCCcccccccccccCCccccCCCCchHHHHH---hcCCHHHHHHHHHhc
Q 006944 38 TDDAFASLLELAANNDVEGFKRSIV---CDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAA---TYGSIDIIRLILSES 111 (624)
Q Consensus 38 d~dg~TpLh~AA~~Gdle~Vk~LLe---~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA---~~G~~dIVklLLe~~ 111 (624)
+.-+.++||.||..|+.+.|+.||+ +.|++++..+ ...|.+|.||||+|+ ..|+.++|++||+.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~---------~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~- 71 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE---------FREPSTGKTCLPKALLNLSAGRNDTIPILLDI- 71 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG---------GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH-
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh---------hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh-
Confidence 3457899999999999997666665 4788888663 122477999999999 77999999999998
Q ss_pred CCC-----------ccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcC--------------CCCCcHHHHH
Q 006944 112 GAD-----------VNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVD--------------AKGHHPVDVI 166 (624)
Q Consensus 112 GAD-----------VN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D--------------~~G~TPLhlA 166 (624)
|++ ++.. +..|+||||+|+..|+ .++|++||++|++++.+| ..|+||||+|
T Consensus 72 g~~~~~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A 147 (260)
T 3jxi_A 72 AEKTGNMREFINSPFRDV-YYRGQTALHIAIERRC---KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA 147 (260)
T ss_dssp HHHTTCHHHHHTCCBCCS-SEESBCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHH
T ss_pred cccccchHhhhccccccc-ccCCCCHHHHHHHcCC---HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHH
Confidence 654 3333 4589999999999999 999999999999999999 6899999999
Q ss_pred hcCCChhhHHHHHHHHHH---CCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 167 VVPPKFQDVRLTLEELLA---TDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 167 a~~g~~~~~~~lLe~LL~---~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
+. .+..+++++|++ .|++++ ..+..|.||||+|+..|.
T Consensus 148 ~~----~g~~~~v~~Ll~~~~~ga~~~-------~~d~~g~TpLh~A~~~~~ 188 (260)
T 3jxi_A 148 AC----TNQPHIVHYLTENGHKQADLR-------RQDSRGNTVLHALVAIAD 188 (260)
T ss_dssp HH----TTCHHHHHHHHHCSSCCCCTT-------CCCTTSCCHHHHHHHHCC
T ss_pred HH----cCCHHHHHHHHhccccCCCCc-------ccCCCCCcHHHHHHHhcc
Confidence 99 455789999999 899998 788899999999998774
No 85
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=3.1e-21 Score=183.91 Aligned_cols=113 Identities=27% Similarity=0.294 Sum_probs=106.3
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcc
Q 006944 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVN 116 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN 116 (624)
.+.+|.|+||.||..|+.++++.||+ |+++|.. |..|+||||+|+..|+.++|++||++ |+++|
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-------------d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~ 103 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-------------DENGRTALLFVAGLGSDKCVRLLAEA-GADLD 103 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTT
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence 35689999999999999999999998 8888877 68999999999999999999999999 99999
Q ss_pred ccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhc
Q 006944 117 LSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVV 168 (624)
Q Consensus 117 ~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~ 168 (624)
.+.+..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+.
T Consensus 104 ~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 104 HRDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELARE 152 (183)
T ss_dssp CCCSSSSCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred cCCCCCCCCHHHHHHhcCc---HHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence 9833889999999999999 999999999999999999999999999986
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.84 E-value=5e-21 Score=173.54 Aligned_cols=117 Identities=25% Similarity=0.312 Sum_probs=109.5
Q ss_pred ccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCC-CC
Q 006944 82 KQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAK-GH 160 (624)
Q Consensus 82 ~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~-G~ 160 (624)
+..|..|.||||+|+..|+.++|++||++ |+++|.+ +..|+||||+|+. |+ .++|++|+++|++++.+|.. |+
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~---~~~v~~Ll~~g~~~~~~~~~~g~ 79 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GS---AQVAELLLLHGAEPNCADPATLT 79 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SC---HHHHHHHHHHTCCSSCCBTTTTB
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CC---HHHHHHHHHCCCCCCCcCCCCCC
Confidence 34479999999999999999999999999 9999999 9999999999999 99 99999999999999999999 99
Q ss_pred cHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 161 HPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 161 TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
||||+|+. .+..+++++|++.|++++ ..+..|.|||++|+..|.
T Consensus 80 t~L~~A~~----~~~~~~v~~Ll~~ga~~~-------~~d~~g~tpl~~A~~~~~ 123 (136)
T 1d9s_A 80 RPVHDAAR----EGFLDTLVVLHRAGARLD-------VCDAWGRLPVDLAEEQGH 123 (136)
T ss_dssp CHHHHHHH----HTCHHHHHHHHHTCCCCC-------CCSSSSSCHHHHHHHHTC
T ss_pred CHHHHHHH----cCCHHHHHHHHHcCCCCC-------ccCCCCCCHHHHHHHcCC
Confidence 99999998 566789999999999988 778899999999999884
No 87
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.84 E-value=8.1e-21 Score=190.10 Aligned_cols=132 Identities=24% Similarity=0.229 Sum_probs=117.0
Q ss_pred CccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccc
Q 006944 38 TDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNL 117 (624)
Q Consensus 38 d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~ 117 (624)
+.+|.|+||.||..|+.++|+.||+ |+++|.. |..|+||||+||..|+.++|++||++ |+++|.
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~ 105 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-------------DENGRTALLFVAGLGSDKCVRLLAEA-GADLDH 105 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-------------CTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-------------CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCc
Confidence 4679999999999999999999998 8888877 68999999999999999999999999 999999
Q ss_pred cCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCC------------hhhHHHHHHHHHHC
Q 006944 118 SCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPK------------FQDVRLTLEELLAT 185 (624)
Q Consensus 118 ~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~------------~~~~~~lLe~LL~~ 185 (624)
+.+..|+||||+|+..|+ .++|++||++|+|++.+|..|+||||+|+..++ ..+..+++++|++.
T Consensus 106 ~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 106 RDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp CCSSSCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 833889999999999999 999999999999999999999999999984211 24667788888876
Q ss_pred CCC
Q 006944 186 DGS 188 (624)
Q Consensus 186 gad 188 (624)
+.+
T Consensus 183 ~~~ 185 (244)
T 3ui2_A 183 VFE 185 (244)
T ss_dssp HEE
T ss_pred ccc
Confidence 543
No 88
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.84 E-value=7.8e-21 Score=171.94 Aligned_cols=115 Identities=23% Similarity=0.236 Sum_probs=108.1
Q ss_pred ccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHH
Q 006944 84 MVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPV 163 (624)
Q Consensus 84 ~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPL 163 (624)
.|.+|+||||+|+..|+.++|++||+. |++++.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|+|||
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L 80 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGH---LKVVELLLQHKALVNTTGYQNDSPL 80 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCcccCcCCCCCCHH
Confidence 478999999999999999999999998 9999999 9999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006944 164 DVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 164 hlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
|+|+. .+..+++++|++.|++++ ..+..|.|||++|+..+
T Consensus 81 ~~A~~----~~~~~~v~~Ll~~ga~~~-------~~~~~g~tpl~~A~~~~ 120 (137)
T 3c5r_A 81 HDAAK----NGHVDIVKLLLSYGASRN-------AVNIFGLRPVDYTDDES 120 (137)
T ss_dssp HHHHH----TTCHHHHHHHHHTTCCTT-------CCCTTSCCGGGGCCCHH
T ss_pred HHHHH----cCCHHHHHHHHHcCCCCC-------CCCCCCCCHHHHHhhcc
Confidence 99999 455678999999999998 78889999999998776
No 89
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.83 E-value=6.3e-21 Score=194.30 Aligned_cols=132 Identities=23% Similarity=0.335 Sum_probs=121.0
Q ss_pred CCCcccCccChHHHHHHH-----HcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHH
Q 006944 32 NHLTVETDDAFASLLELA-----ANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRL 106 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA-----~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVkl 106 (624)
.+++..+..|.||||.|+ ..++.++++.|++ .|.+++.. +..|+||||+||..|+.++|++
T Consensus 136 ~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~tpLh~A~~~g~~~~v~~ 201 (276)
T 4hbd_A 136 CKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFR-LGNINAKA-------------SQAGQTALMLAVSHGRVDVVKA 201 (276)
T ss_dssp CCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHH-HSCTTCCC-------------TTTCCCHHHHHHHTTCHHHHHH
T ss_pred CcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHH-cCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHH
Confidence 478889999999999999 7799999999999 77776665 6889999999999999999999
Q ss_pred HHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHH-CCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHC
Q 006944 107 ILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLA-AGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLAT 185 (624)
Q Consensus 107 LLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~-~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~ 185 (624)
||+. |+|+|.+ |.+|+||||+|+..|+ .++|++||+ .|+|++.+|..|+||||+|+. .+..+++++|+++
T Consensus 202 Ll~~-gad~n~~-d~~G~TpLh~A~~~g~---~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 202 LLAC-EADVNVQ-DDDGSTALMCACEHGH---KEIAGLLLAVPSCDISLTDRDGSTALMVALD----AGQSEIASMLYSR 272 (276)
T ss_dssp HHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHH
T ss_pred HHhC-CCCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH----cCCHHHHHHHHhc
Confidence 9999 9999999 9999999999999999 999999999 899999999999999999999 5566777877765
Q ss_pred C
Q 006944 186 D 186 (624)
Q Consensus 186 g 186 (624)
.
T Consensus 273 ~ 273 (276)
T 4hbd_A 273 M 273 (276)
T ss_dssp C
T ss_pred c
Confidence 4
No 90
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=2.3e-20 Score=206.17 Aligned_cols=137 Identities=19% Similarity=0.193 Sum_probs=119.4
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHh---cCCHHHHHHHHHhcCC
Q 006944 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAAT---YGSIDIIRLILSESGA 113 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~---~G~~dIVklLLe~~GA 113 (624)
+.....+.||.|+..|+++.|+.||+ .|+++|.... ....|..|.||||+||. .|+.++|++||++ |+
T Consensus 128 ~~~~~~~~L~~A~~~g~~~~v~~ll~-~g~~~n~~~~-------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga 198 (497)
T 3lvq_E 128 RCTPEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLP-------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GG 198 (497)
T ss_dssp CCC-CHHHHHHHHHHTCHHHHHHHHH-TTCCSSSCBC-------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SC
T ss_pred cccccHHHHHHHHhccCHHHHHHHHh-hcccccCCCC-------CcccccccchHHHHHHHhcccccHHHHHHHHHc-CC
Confidence 33445588999999999999999999 8999987621 12236789999999965 9999999999999 99
Q ss_pred CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006944 114 DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 114 DVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
|+|.+ |.+|+||||+|+..|+ .++|++||++|||++.+|..|+||||+|+. .+..+++++|+++|++++
T Consensus 199 ~vn~~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~----~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 199 HLDAK-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARK----KHHKECEELLEQAQAGTF 267 (497)
T ss_dssp CTTCC-CSSSCCHHHHHTTTTC---HHHHHHHHHTCCCCSCCCTTCCCHHHHHHH----TTCHHHHHHHHHTCC---
T ss_pred CCCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHhCCCCC
Confidence 99999 9999999999999999 999999999999999999999999999998 556788999999999987
No 91
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=3.6e-20 Score=190.01 Aligned_cols=137 Identities=20% Similarity=0.230 Sum_probs=120.4
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhc---CCHHHHHHHHHhcCC
Q 006944 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATY---GSIDIIRLILSESGA 113 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~---G~~dIVklLLe~~GA 113 (624)
.+....++|+.|+..||++.++.+++ .|++++... ..+..|..|+||||+||.. |+.++|++||++ |+
T Consensus 126 ~~~~~l~~l~~a~~~~d~~~~~~ll~-~g~~~~~~~-------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga 196 (278)
T 1dcq_A 126 DTAAKLHSLCEAVKTRDIFGLLQAYA-DGVDLTEKI-------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SG 196 (278)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHH-TTCCTTSBC-------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CS
T ss_pred ccchhhhhhhhHhhhcccHHHHHHHH-hhcchhhhc-------cccccccCCCCcchHHHHhcccchHHHHHHHHHC-CC
Confidence 34456789999999999999999999 899877642 1233368899999999999 999999999999 99
Q ss_pred CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006944 114 DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 114 DVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
++|.+ |..|+||||+|+..|+ .++|++||++|||++.+|..|+||||+|+. .+..+++++|++.|++..
T Consensus 197 ~in~~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 197 NLDKQ-TGKGSTALHYCCLTDN---AECLKLLLRGKASIEIANESGETPLDIAKR----LKHEHCEELLTQALSGRF 265 (278)
T ss_dssp CTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTTCC
T ss_pred Ccccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence 99999 9999999999999999 999999999999999999999999999999 455678888888887543
No 92
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=2.4e-20 Score=199.76 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=116.2
Q ss_pred CCcccCccChHHHHHHHHc-CCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhc
Q 006944 33 HLTVETDDAFASLLELAAN-NDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSES 111 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~-Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~ 111 (624)
..+.....+.|+||.|+.. |++++|+.||+ .|+++|..+ .+.+|.||||+||..|+.++|++||++
T Consensus 191 ~~~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~-----------~~~~g~TpLh~Aa~~g~~~iv~~LL~~- 257 (368)
T 3jue_A 191 SEDLGSLHPGALLFRASGHPPSLPTMADALA-HGADVNWVN-----------GGQDNATPLIQATAANSLLACEFLLQN- 257 (368)
T ss_dssp ------CCHHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCC-----------TTTTCCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred ccccccCCCCcHHHHHHHccCCHHHHHHHHH-cCCCCCccc-----------cccCCCCHHHHHHHCCCHHHHHHHHHc-
Confidence 3445556778999999999 99999999999 999999862 127899999999999999999999999
Q ss_pred CCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcc
Q 006944 112 GADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVER 191 (624)
Q Consensus 112 GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~ 191 (624)
|+|+|.+ |..|+||||+|+..|+ .++|++||++|+|++.+|..|.||||+|+..+ ..+++++|+..+....
T Consensus 258 Gadvn~~-d~~G~TpLh~A~~~g~---~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g----~~~iv~lLl~~~~~~~- 328 (368)
T 3jue_A 258 GANVNQA-DSAGRGPLHHATILGH---TGLACLFLKRGADLGARDSEGRDPLTIAMETA----NADIVTLLRLAKMREA- 328 (368)
T ss_dssp TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT----CHHHHHHHHHHHC----
T ss_pred CCCCCCC-CCCCCCHHHHHHHcCc---HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCC----CHHHHHHHHHcCCCcc-
Confidence 9999999 9999999999999999 99999999999999999999999999999944 4566777776654332
Q ss_pred cccccccccCCCCChhhhhhhcC
Q 006944 192 NLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 192 ~~~l~~a~~~~g~TpL~lAle~G 214 (624)
........+.|+++++....
T Consensus 329 ---~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 329 ---EAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp -----------------------
T ss_pred ---cccccCCCCCCHHHHHHHHH
Confidence 01123445667777665543
No 93
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.82 E-value=8.4e-21 Score=194.04 Aligned_cols=145 Identities=16% Similarity=0.096 Sum_probs=125.0
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcccc
Q 006944 39 DDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLS 118 (624)
Q Consensus 39 ~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~ 118 (624)
.+|.||||.||..|+.++|+.||+ .|+++|.. |..|+||||+|+..|+.++|++||++ |++++.+
T Consensus 60 ~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~ 124 (285)
T 3kea_A 60 LENEFPLHQAATLEDTKIVKILLF-SGLDDSQF-------------DDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFY 124 (285)
T ss_dssp CTTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCcc
Confidence 358999999999999999999999 89999887 68899999999999999999999999 8999988
Q ss_pred CCCCC-ChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccc
Q 006944 119 CGNDK-STALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVST 197 (624)
Q Consensus 119 ~d~~G-~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~ 197 (624)
+..| .||||+|+..|+ .++|++|+++|+++... ..|+||||+|+. .+..+++++|++.|++++
T Consensus 125 -~~~g~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~----~g~~~~v~~Ll~~gad~n------- 188 (285)
T 3kea_A 125 -GKTGWKTSFYHAVMLND---VSIVSYFLSEIPSTFDL-AILLSCIHITIK----NGHVDMMILLLDYMTSTN------- 188 (285)
T ss_dssp -SSSGGGSHHHHHHHTTC---HHHHHHHHTTSCTTCCC-STHHHHHHHHHH----TTCHHHHHHHHHHHHHTC-------
T ss_pred -CCCCCCCHHHHHHHcCC---HHHHHHHHhCCCccccc-cCCccHHHHHHH----cChHHHHHHHHHcCCCCC-------
Confidence 8888 799999999999 99999999999887332 289999999998 455667888888888887
Q ss_pred cccCCCCCh-hhhhhhcC
Q 006944 198 TTSNSNSPP-LSPALENG 214 (624)
Q Consensus 198 a~~~~g~Tp-L~lAle~G 214 (624)
..+..|.|| |++|++.|
T Consensus 189 ~~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 189 TNNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp TTCCCBCCTTHHHHHHHT
T ss_pred cccCCCCChHHHHHHHcC
Confidence 667778786 88887665
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.81 E-value=4.2e-20 Score=164.32 Aligned_cols=113 Identities=21% Similarity=0.255 Sum_probs=103.5
Q ss_pred cCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHH
Q 006944 85 VNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVD 164 (624)
Q Consensus 85 D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLh 164 (624)
+..|.||||+|+..|+.++|++||+. |+++|.+ +..|+||||+|+..|+ .++|++|++.|++++.+|..|+||||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~tpL~ 78 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLKGADINAPDKHHITPLL 78 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 56788999999999999999999998 8999998 9999999999999999 99999999999999999999999999
Q ss_pred HHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhc
Q 006944 165 VIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALEN 213 (624)
Q Consensus 165 lAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~ 213 (624)
+|+. .+..+++++|++.|++++ ..+..|.|||++|...
T Consensus 79 ~A~~----~~~~~~v~~Ll~~ga~~~-------~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 79 SAVY----EGHVSCVKLLLSKGADKT-------VKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HHHH----HTCHHHHHHHHHTTCCTT-------CCCTTSCCHHHHCCCH
T ss_pred HHHH----cCCHHHHHHHHHcCCCCC-------CcCCCCCCHHHHhCCH
Confidence 9998 566789999999999988 7889999999998543
No 95
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.81 E-value=5e-20 Score=166.93 Aligned_cols=115 Identities=29% Similarity=0.385 Sum_probs=107.5
Q ss_pred cCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHH
Q 006944 85 VNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVD 164 (624)
Q Consensus 85 D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLh 164 (624)
...+.||||+||..|+.++|++||++ |+++|.+ +..|.||||+|+..|+ .++|++|++.|++++.+|..|+||||
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGH---LEIVEVLLKNGADVNAVDAIGFTPLH 85 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 56788999999999999999999999 9999999 9999999999999999 99999999999999999999999999
Q ss_pred HHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 165 VIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 165 lAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
+|+. .+..+++++|++.|++++ ..+..|.|||++|+..|.
T Consensus 86 ~A~~----~~~~~~v~~Ll~~g~~~~-------~~~~~g~tpl~~A~~~~~ 125 (136)
T 2jab_A 86 LAAF----IGHLEIAEVLLKHGADVN-------AQDKFGKTAFDISIGNGN 125 (136)
T ss_dssp HHHH----HTCHHHHHHHHHTTCCTT-------CCCTTSCCHHHHHHHTTC
T ss_pred HHHH----cCCHHHHHHHHHcCCCCc-------CcCCCCCCHHHHHHHCCC
Confidence 9998 566789999999999988 778899999999999884
No 96
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=2.9e-20 Score=163.19 Aligned_cols=109 Identities=33% Similarity=0.424 Sum_probs=100.3
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCc
Q 006944 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADV 115 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADV 115 (624)
.+|.+|.|+||.||..|+.++++.||+ .|++++.. |..|.||||+|+..|+.++|++||++ |+++
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~ 68 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNAR-------------SKDGNTPLHLAAKNGHAEIVKLLLAK-GADV 68 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCC-------------CSSSCCTTHHHHTTTCHHHHHHHTTT-TCCT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCC
Confidence 578899999999999999999999999 88998877 68999999999999999999999998 9999
Q ss_pred cccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHH
Q 006944 116 NLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPV 163 (624)
Q Consensus 116 N~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPL 163 (624)
+.+ +..|.||||+|+..|+ .+++++|+++|+|+|.++..|.+|-
T Consensus 69 ~~~-d~~g~tpl~~A~~~~~---~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 69 NAR-SKDGNTPEHLAKKNGH---HEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TCC-CTTCCCTTHHHHTTTC---HHHHHHHHTTSSSHHHHSCCCC---
T ss_pred ccc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCccccccc
Confidence 998 8999999999999999 9999999999999999999999874
No 97
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.81 E-value=7.4e-21 Score=198.43 Aligned_cols=182 Identities=10% Similarity=0.036 Sum_probs=133.5
Q ss_pred CccccCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc---------------------------------
Q 006944 26 HTNVDMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------------------- 72 (624)
Q Consensus 26 ~~~~~~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------------------- 72 (624)
......-+++..+..|.++++ |++++|+.||+ +|++++...
T Consensus 37 ~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~-~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 110 (327)
T 1sw6_A 37 DFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQ-RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQ 110 (327)
T ss_dssp STTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHH-HHHC-------------------------------CHHHHHH
T ss_pred HHhhCCcccccCCCCCCcccC-----chhHHHHHHHH-hccCCccccchHhhhcccccccccccCCccchhHHHHHhhHH
Confidence 344555668888889999877 99999999998 787766521
Q ss_pred ----cccccccCCcc-ccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHH
Q 006944 73 ----LWYGRQKGSKQ-MVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLA 147 (624)
Q Consensus 73 ----l~~~r~~~~~~-~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~ 147 (624)
++...+.+++. .|.+|+||||+||..|+.++|++||++ |+++|.+ +.+|+||||+|+..|+....++++.||+
T Consensus 111 ~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~-d~~g~TpLh~A~~~g~~~~~~~~~~ll~ 188 (327)
T 1sw6_A 111 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLD 188 (327)
T ss_dssp HHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHhcccccHHHHHHHHH
Confidence 23344567777 899999999999999999999999999 9999999 9999999999999886111367888888
Q ss_pred CC-CCCCCcCCCCCcHHHHHhc----CCChhhHHHHHHHHHH----------------CCCCCc-----ccccc------
Q 006944 148 AG-ADPNFVDAKGHHPVDVIVV----PPKFQDVRLTLEELLA----------------TDGSVE-----RNLRV------ 195 (624)
Q Consensus 148 ~G-AD~n~~D~~G~TPLhlAa~----~g~~~~~~~lLe~LL~----------------~gadv~-----~~~~l------ 195 (624)
.+ ++++.+|..|+||||+|+. .|+...++.+++.... .|++++ +.+++
T Consensus 189 ~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~ 268 (327)
T 1sw6_A 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 268 (327)
T ss_dssp HHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSH
T ss_pred hhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHH
Confidence 86 8899999999999999998 5555555544443210 033332 11111
Q ss_pred -------cccccCCCCChhhhhhhcCC
Q 006944 196 -------STTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 196 -------~~a~~~~g~TpL~lAle~Gs 215 (624)
....+..|.||||+|++.|.
T Consensus 269 ~~Ll~~~~n~~d~~G~TpLh~A~~~g~ 295 (327)
T 1sw6_A 269 KWIIANMLNAQDSNGDTCLNIAARLGN 295 (327)
T ss_dssp HHHHHHTTTCCCTTSCCHHHHHHHHCC
T ss_pred HHHHHhCCCCCCCCCCCHHHHHHHcCC
Confidence 22567789999999998873
No 98
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.81 E-value=8.2e-20 Score=181.64 Aligned_cols=131 Identities=18% Similarity=0.284 Sum_probs=109.4
Q ss_pred HHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCC
Q 006944 57 FKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGAL 136 (624)
Q Consensus 57 Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~ 136 (624)
|+.||+ .|++++... ..+.+|.||||+||..|+.++|++||+. |+++|.+ +..|+||||+|+..|+
T Consensus 1 v~~ll~-~~~~~~~~~----------~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~- 66 (229)
T 2vge_A 1 MRSVLR-KAGSPRKAR----------RARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGAN- 66 (229)
T ss_dssp ----------CCCCCC----------CTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTC-
T ss_pred Ceehhc-cCCCCcccc----------ccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCC-
Confidence 467777 788877653 3467888999999999999999999998 9999998 9999999999999999
Q ss_pred ChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccccccccccc-CCCCChhhhh--hhc
Q 006944 137 NAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTS-NSNSPPLSPA--LEN 213 (624)
Q Consensus 137 ~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~-~~g~TpL~lA--le~ 213 (624)
.++|++||+.|+|++.+|..|+||||+|+. .+..+++++|++.|++++ ..+ ..|.|||++| +..
T Consensus 67 --~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~ga~~~-------~~~~~~g~tpL~~A~a~~~ 133 (229)
T 2vge_A 67 --YSIVDFLITAGANVNSPDSHGWTPLHCAAS----CNDTVICMALVQHGAAIF-------ATTLSDGATAFEKCDPYRE 133 (229)
T ss_dssp --HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCTT-------CCCSSTTCCTGGGCCTTST
T ss_pred --HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc-------cccCCCCCCHHHHHHHHhc
Confidence 999999999999999999999999999999 456788999999999988 444 5899999998 666
Q ss_pred C
Q 006944 214 G 214 (624)
Q Consensus 214 G 214 (624)
|
T Consensus 134 ~ 134 (229)
T 2vge_A 134 G 134 (229)
T ss_dssp T
T ss_pred C
Confidence 5
No 99
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1.1e-19 Score=154.13 Aligned_cols=93 Identities=39% Similarity=0.577 Sum_probs=86.4
Q ss_pred CCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 006944 87 EQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVI 166 (624)
Q Consensus 87 ~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlA 166 (624)
+|+||||+|+..|+.++|++||+. |+++|.+ +..|+||||+|+..|+ .++|++|++.|++++.+|..|+||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A 75 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA 75 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 489999999999999999999998 9999999 9999999999999999 9999999999999999999999999999
Q ss_pred hcCCChhhHHHHHHHHHHCCCC
Q 006944 167 VVPPKFQDVRLTLEELLATDGS 188 (624)
Q Consensus 167 a~~g~~~~~~~lLe~LL~~gad 188 (624)
+. .+..+++++|++.|++
T Consensus 76 ~~----~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 76 AR----NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HH----TTCHHHHHHHHHTTCC
T ss_pred HH----cCCHHHHHHHHHcCCC
Confidence 98 5567888999998874
No 100
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=1.6e-19 Score=153.26 Aligned_cols=93 Identities=38% Similarity=0.507 Sum_probs=87.8
Q ss_pred cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccC
Q 006944 40 DAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSC 119 (624)
Q Consensus 40 dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~ 119 (624)
+|.||||.|+..|+.++++.||+ .|+++|.. |.+|+||||+|+..|+.++|++|+++ |++++.+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~-------------d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~- 64 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAK-------------DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK- 64 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-
Confidence 48899999999999999999999 89999987 68999999999999999999999999 9999999
Q ss_pred CCCCChHHHHHHhCCCCChHHHHHHHHHCCCC
Q 006944 120 GNDKSTALHCAASGGALNAVDVVKLLLAAGAD 151 (624)
Q Consensus 120 d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD 151 (624)
+.+|.||||+|+..|+ .+++++|+++||+
T Consensus 65 d~~g~t~l~~A~~~~~---~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 65 DKNGRTPLHLAARNGH---LEVVKLLLEAGAY 93 (93)
T ss_dssp CTTSCCHHHHHHHTTC---HHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHcCCC
Confidence 9999999999999999 9999999999986
No 101
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.80 E-value=3.4e-19 Score=156.56 Aligned_cols=113 Identities=37% Similarity=0.566 Sum_probs=105.8
Q ss_pred CCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 006944 87 EQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVI 166 (624)
Q Consensus 87 ~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlA 166 (624)
+|+||||+|+..|+.++|++|+++ |++++.. +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A 75 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA 75 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCcHHHHH
Confidence 589999999999999999999999 9999998 9999999999999999 9999999999999999999999999999
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 167 VVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 167 a~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
+. .+..+++++|++.|++++ ..+..|.|||++|+..|.
T Consensus 76 ~~----~~~~~~~~~Ll~~g~~~~-------~~~~~g~t~l~~A~~~~~ 113 (126)
T 1n0r_A 76 AR----NGHLEVVKLLLEAGADVN-------AKDKNGRTPLHLAARNGH 113 (126)
T ss_dssp HH----TTCHHHHHHHHHTTCCTT-------CCCTTSCCHHHHHHHTTC
T ss_pred HH----cChHHHHHHHHHcCCCCc-------ccCCCCCCHHHHHHHcCc
Confidence 98 455678999999999987 678899999999999884
No 102
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.79 E-value=1.6e-19 Score=167.33 Aligned_cols=115 Identities=24% Similarity=0.291 Sum_probs=105.9
Q ss_pred ccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCc-H
Q 006944 84 MVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHH-P 162 (624)
Q Consensus 84 ~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~T-P 162 (624)
.+..|.||||+||..|+.++|++||++ |+++|.. +..|.||||+|+ .|+ .++|++|+++|++++.+|..|+| |
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~---~~~v~~Ll~~g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGS---ARVAELLLLHGAEPNCADPATLTRP 81 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTC---HHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCC---HHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 367899999999999999999999998 9999999 999999999985 888 99999999999999999999999 9
Q ss_pred HHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 163 VDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 163 LhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
||+|+. .+..+++++|++.|++++ ..+..|.|||++|+..|.
T Consensus 82 L~~A~~----~~~~~~v~~Ll~~ga~~~-------~~d~~g~tpl~~A~~~~~ 123 (156)
T 1bi7_B 82 VHDAAR----EGFLDTLVVLHRAGARLD-------VRDAWGRLPVDLAEELGH 123 (156)
T ss_dssp HHHHHH----HTCHHHHHHHHHHTCCSS-------CCCTTCCCHHHHHHHHTC
T ss_pred HHHHHH----CCCHHHHHHHHHcCCCCc-------ccCCCCCCHHHHHHHhCH
Confidence 999998 566788999999999998 778899999999999884
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.78 E-value=2.1e-19 Score=175.55 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=108.9
Q ss_pred cccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHC-CCCCCCcCCCCCc
Q 006944 83 QMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA-GADPNFVDAKGHH 161 (624)
Q Consensus 83 ~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~-GAD~n~~D~~G~T 161 (624)
..+.+|.||||+||..|+.++|++||+. |+++|.+ +..|+||||+|+..|+ .++|++||+. |++++.+|..|+|
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~g~~~~~~d~~g~t 142 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGL-DKAGSTALYWACHGGH---KDIVEMLFTQPNIELNQQNKLGDT 142 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHTTSTTCCCCCCCTTSCC
T ss_pred ccccccccccccccccCcHHHHHHHHhC-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHcCCCCCccccCCCCCC
Confidence 3567899999999999999999999998 9999998 9999999999999999 9999999999 9999999999999
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006944 162 PVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 162 PLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~G 214 (624)
|||+|+. .+..+++++|++.|++++ ..+..|.|||++|+..|
T Consensus 143 pL~~A~~----~~~~~~v~~Ll~~ga~~~-------~~~~~g~t~l~~A~~~~ 184 (222)
T 3ehr_A 143 ALHAAAW----KGYADIVQLLLAKGARTD-------LRNIEKKLAFDMATNAA 184 (222)
T ss_dssp HHHHHHH----HTCHHHHHHHHHHTCCSC-------CCCTTSCCHHHHCCSHH
T ss_pred HHHHHHH----cCCHHHHHHHHHcCCCCc-------cccCCCCCHHHHhcchh
Confidence 9999998 566789999999999998 78889999999999877
No 104
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=4.2e-19 Score=155.71 Aligned_cols=99 Identities=35% Similarity=0.441 Sum_probs=93.8
Q ss_pred cccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcH
Q 006944 83 QMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHP 162 (624)
Q Consensus 83 ~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TP 162 (624)
..|.+|+||||+||..|+.+++++||++ |++++.+ +..|.||||+|+..|+ .++|++|++.|++++.+|..|+||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~d~~g~tp 78 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNAR-SKDGNTPLHLAAKNGH---AEIVKLLLAKGADVNARSKDGNTP 78 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCC-CSSSCCTTHHHHTTTC---HHHHHHHTTTTCCTTCCCTTCCCT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCCH
Confidence 3588999999999999999999999998 9999998 9999999999999999 999999999999999999999999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006944 163 VDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 163 LhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
||+|+. .+..+++++|+++|++++
T Consensus 79 l~~A~~----~~~~~~~~~Ll~~ga~~n 102 (115)
T 2l6b_A 79 EHLAKK----NGHHEIVKLLDAKGADVN 102 (115)
T ss_dssp THHHHT----TTCHHHHHHHHTTSSSHH
T ss_pred HHHHHH----CCCHHHHHHHHHcCCCCC
Confidence 999999 456789999999999998
No 105
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.77 E-value=2.6e-19 Score=170.49 Aligned_cols=116 Identities=25% Similarity=0.249 Sum_probs=107.1
Q ss_pred cccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcC-CCCCc
Q 006944 83 QMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVD-AKGHH 161 (624)
Q Consensus 83 ~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D-~~G~T 161 (624)
..+.+|.||||+|+..|+.++|++||+ |+++|.+ +..|+||||+|+..|+ .++|++|+++|++++.+| ..|+|
T Consensus 39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~g~t 112 (183)
T 3deo_A 39 DVVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLT 112 (183)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSSCC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCC
Confidence 346789999999999999999999997 7999998 9999999999999999 999999999999999999 89999
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 162 PVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 162 PLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
|||+|+. .+..+++++|++.|++++ ..+..|.|||++|++.+.
T Consensus 113 pL~~A~~----~~~~~~v~~Ll~~ga~~~-------~~d~~g~tpl~~A~~~~~ 155 (183)
T 3deo_A 113 ALHMAAG----YVRPEVVEALVELGADIE-------VEDERGLTALELAREILK 155 (183)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHTCCTT-------CCCTTSCCHHHHHHHHHH
T ss_pred HHHHHHh----cCcHHHHHHHHHcCCCCc-------CCCCCCCCHHHHHHHhcc
Confidence 9999998 455678899999999988 788999999999999874
No 106
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.74 E-value=2e-18 Score=172.60 Aligned_cols=114 Identities=25% Similarity=0.246 Sum_probs=105.1
Q ss_pred cCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcC-CCCCcHH
Q 006944 85 VNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVD-AKGHHPV 163 (624)
Q Consensus 85 D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D-~~G~TPL 163 (624)
+.+|.||||+||..|+.++|++||+ |+++|.+ +..|+||||+|+..|+ .++|++||++|++++.+| ..|+|||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~t~L 115 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTAL 115 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSCCCHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence 4678999999999999999999997 7999999 9999999999999999 999999999999999999 8899999
Q ss_pred HHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 164 DVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 164 hlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
|+|+. .+..+++++|+++|++++ ..+..|.|||++|++.+.
T Consensus 116 ~~A~~----~g~~~~v~~Ll~~ga~~~-------~~d~~g~t~l~~A~~~~~ 156 (244)
T 3ui2_A 116 HMAAG----YVRPEVVEALVELGADIE-------VEDERGLTALELAREILK 156 (244)
T ss_dssp HHHHH----TTCHHHHHHHHHTTCCTT-------CCCTTCCCHHHHHHHHHT
T ss_pred HHHHH----cCCHHHHHHHHHCCCCCC-------CCCCCCCcHHHHHHHHHh
Confidence 99999 455678999999999998 778899999999987663
No 107
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.73 E-value=1.9e-18 Score=179.25 Aligned_cols=110 Identities=21% Similarity=0.094 Sum_probs=97.9
Q ss_pred cCccChHHHHHHHHc---CCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCC
Q 006944 37 ETDDAFASLLELAAN---NDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGA 113 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~---Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GA 113 (624)
.+..|.|+||.||.. |++++|++||+ .|+++|.. |.+|+||||+|+..|+.++|++||++ |+
T Consensus 186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-~gadvn~~-------------d~~G~TpLh~A~~~g~~~~v~~Ll~~-ga 250 (301)
T 2b0o_E 186 AQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAK-------------AADGNTALHYAALYNQPDCLKLLLKG-RA 250 (301)
T ss_dssp SCSCEECHHHHHHHTCCTTTHHHHHHHHH-HSSCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred cCCCCccHHHHHHHhcccCcHHHHHHHHh-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence 588899999999997 89999999999 79999987 68999999999999999999999998 99
Q ss_pred CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCC
Q 006944 114 DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPK 171 (624)
Q Consensus 114 DVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~ 171 (624)
|++.+ |.+|.||||+|+..|+ .+++++|+++|++ .|.||||+|+..|+
T Consensus 251 d~~~~-d~~G~TpL~~A~~~~~---~~iv~~Ll~~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 251 LVGTV-NEAGETALDIARKKHH---KECEELLEQAQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp CCSCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHHHH------TTSSCCC-------
T ss_pred CCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence 99999 9999999999999999 9999999999987 58999999998554
No 108
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.73 E-value=1e-19 Score=195.35 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=104.6
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCC--
Q 006944 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGAD-- 114 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GAD-- 114 (624)
++.++.|+||.||..|++++|+.||+ .|+..... ...+..|.||||+||..|+.++|++||++ |+|
T Consensus 88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~-~ga~~~~~----------~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~ 155 (376)
T 2aja_A 88 KGIKSEVICFVAAITGCSSALDTLCL-LLTSDEIV----------KVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEI 155 (376)
T ss_dssp HTCCHHHHHHHHHHHCCHHHHHHHTT-C--CCSSC----------C--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTH
T ss_pred cCCCcCCHHHHHHHcCCHHHHHHHHH-cCCcHHHH----------HHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcc
Confidence 45567799999999999999999999 66622111 01245678999999999999999999999 876
Q ss_pred -ccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCC--cCCCCCcHHHHHh-cCCChhhHHHHHHHHHHCCC
Q 006944 115 -VNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNF--VDAKGHHPVDVIV-VPPKFQDVRLTLEELLATDG 187 (624)
Q Consensus 115 -VN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~--~D~~G~TPLhlAa-~~g~~~~~~~lLe~LL~~ga 187 (624)
++.. +.+ .||||+||..|+ .++|++|+++|++++. +|..|.||||+|+ . .+..+++++|++.|+
T Consensus 156 ~~~i~-~~~-~TpLh~Aa~~G~---~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~----~G~~eiv~~Ll~~ga 223 (376)
T 2aja_A 156 MAMIQ-AEN-YHAFRLAAENGH---LHVLNRLCELAPTEATAMIQAENYYAFRWAAVG----RGHHNVINFLLDCPV 223 (376)
T ss_dssp HHHHS-HHH-HHHHHHHHHTTC---HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST----TCCHHHHHHHTTSHH
T ss_pred ccccC-CCC-CCHHHHHHHCCC---HHHHHHHHHcCCccchhccCCCCCCHHHHHHHH----CCCHHHHHHHHhCCC
Confidence 2332 223 999999999999 9999999999999988 8999999999999 9 455678888887653
No 109
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.68 E-value=5.8e-17 Score=142.18 Aligned_cols=93 Identities=35% Similarity=0.447 Sum_probs=81.8
Q ss_pred CccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCC
Q 006944 81 SKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGH 160 (624)
Q Consensus 81 ~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~ 160 (624)
....|.+|.|+||+||..|+.++|++||+. |+++|.+ +..|.||||+|+..|+ .++|++||++|++++.+|..|+
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~-d~~g~tpLh~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~ 91 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAK-DKNGSTPLHLAARNGH---LEVVKLLLEAGADVXAQDKFGK 91 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSC
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccCCC
Confidence 345688999999999999999999999998 9999999 9999999999999999 9999999999999999999999
Q ss_pred cHHHHHhcCCChhhHHHHHHHH
Q 006944 161 HPVDVIVVPPKFQDVRLTLEEL 182 (624)
Q Consensus 161 TPLhlAa~~g~~~~~~~lLe~L 182 (624)
||||+|+. .+..+++++|
T Consensus 92 tpl~~A~~----~~~~~~~~~L 109 (110)
T 2zgd_A 92 TAFDISID----NGNEDLAEIL 109 (110)
T ss_dssp CHHHHHHH----HTCHHHHHHH
T ss_pred cHHHHHHH----cCCHHHHHHh
Confidence 99999998 4445555544
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=7.9e-17 Score=177.89 Aligned_cols=106 Identities=22% Similarity=0.136 Sum_probs=90.7
Q ss_pred CccChHHHHHHHH---cCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCC
Q 006944 38 TDDAFASLLELAA---NNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGAD 114 (624)
Q Consensus 38 d~dg~TpLh~AA~---~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GAD 114 (624)
+.+|.||||.||. .|+.++|+.||+ .|+++|.. |.+|+||||+||..|+.++|++||++ |||
T Consensus 168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~-~ga~vn~~-------------d~~g~TpLh~A~~~g~~~~v~~Ll~~-ga~ 232 (497)
T 3lvq_E 168 QAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAK-------------AADGNTALHYAALYNQPDCLKLLLKG-RAL 232 (497)
T ss_dssp CCSCBCHHHHHHHTCCTTTHHHHHHHHH-HSCCTTCC-------------CSSSCCHHHHHTTTTCHHHHHHHHHT-CCC
T ss_pred ccccchHHHHHHHhcccccHHHHHHHHH-cCCCCCcc-------------CCCCCcHHHHHHHcCCHHHHHHHHHc-CCC
Confidence 7889999999977 999999999999 89999987 68999999999999999999999999 999
Q ss_pred ccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhc
Q 006944 115 VNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVV 168 (624)
Q Consensus 115 VN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~ 168 (624)
+|.+ |.+|.||||+|+..|+ .+++++|+++|||++. +|+|++..
T Consensus 233 ~~~~-d~~g~tpl~~A~~~~~---~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 233 VGTV-NEAGETALDIARKKHH---KECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp CSCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTCC------------------
T ss_pred CCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHhCCCCCC------Ccceeecc
Confidence 9999 9999999999999999 9999999999999987 46666543
No 111
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.66 E-value=1.5e-16 Score=162.97 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=93.3
Q ss_pred CcccCccChHHHHHHHHc---CCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006944 34 LTVETDDAFASLLELAAN---NDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~---Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~ 110 (624)
++..+..|.||||.||.. |+.++|+.||+ .|+++|.. |.+|+||||+||..|+.++|++||++
T Consensus 162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~-~ga~in~~-------------d~~g~TpLh~A~~~g~~~~v~~Ll~~ 227 (278)
T 1dcq_A 162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQ-------------TGKGSTALHYCCLTDNAECLKLLLRG 227 (278)
T ss_dssp CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccCCCCcchHHHHhcccchHHHHHHHHH-CCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 455688899999999999 89999999999 89999987 68999999999999999999999998
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCC
Q 006944 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGAD 151 (624)
Q Consensus 111 ~GADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD 151 (624)
|+|+|.+ |.+|.||||+|+..|+ .++|++|+++|++
T Consensus 228 -gad~~~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 228 -KASIEIA-NESGETPLDIAKRLKH---EHCEELLTQALSG 263 (278)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHHTT
T ss_pred -CCCCCCc-cCCCCCHHHHHHHcCC---HHHHHHHHHcCCC
Confidence 9999999 9999999999999999 9999999999985
No 112
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=2.2e-16 Score=138.39 Aligned_cols=94 Identities=24% Similarity=0.328 Sum_probs=84.2
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006944 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~G 112 (624)
.+.-.+.+|.|+||.||..|+.++|+.||+ .|+++|.. |..|.||||+||..|+.++|++||++ |
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~-------------d~~g~tpLh~A~~~~~~~~v~~Ll~~-g 80 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAK-------------DKNGSTPLHLAARNGHLEVVKLLLEA-G 80 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-C
Confidence 344567889999999999999999999999 89999887 68999999999999999999999999 9
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHH
Q 006944 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLL 145 (624)
Q Consensus 113 ADVN~~~d~~G~TpLH~AA~~G~~~~~eiVklL 145 (624)
++++.+ +..|.||||+|+..|+ .+++++|
T Consensus 81 a~~~~~-d~~g~tpl~~A~~~~~---~~~~~~L 109 (110)
T 2zgd_A 81 ADVXAQ-DKFGKTAFDISIDNGN---EDLAEIL 109 (110)
T ss_dssp CCTTCC-CTTSCCHHHHHHHHTC---HHHHHHH
T ss_pred CCcccc-ccCCCcHHHHHHHcCC---HHHHHHh
Confidence 999999 9999999999999999 9999987
No 113
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.66 E-value=1.8e-16 Score=169.74 Aligned_cols=113 Identities=23% Similarity=0.284 Sum_probs=105.6
Q ss_pred CCCchHHHHHhc-CCHHHHHHHHHhcCCCccccCC--CCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHH
Q 006944 87 EQRTPLMVAATY-GSIDIIRLILSESGADVNLSCG--NDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPV 163 (624)
Q Consensus 87 ~G~TPLhlAA~~-G~~dIVklLLe~~GADVN~~~d--~~G~TpLH~AA~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPL 163 (624)
.+.|+||+|+.. |++++|++||++ |+|+|.. + .+|.||||+|+..|+ .++|++||++|+|+|.+|..|+|||
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~-~~~~~g~TpLh~Aa~~g~---~~iv~~LL~~Gadvn~~d~~G~TpL 272 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAH-GADVNWV-NGGQDNATPLIQATAANS---LLACEFLLQNGANVNQADSAGRGPL 272 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCC-CTTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHc-CCCCCcc-ccccCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 456899999999 999999999998 9999998 6 789999999999999 9999999999999999999999999
Q ss_pred HHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006944 164 DVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 164 hlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lAle~Gs 215 (624)
|+|+. .+..+++++|+++|++++ ..+..|.|||++|+..|.
T Consensus 273 h~A~~----~g~~~~v~~LL~~Gad~~-------~~d~~G~TpL~~A~~~g~ 313 (368)
T 3jue_A 273 HHATI----LGHTGLACLFLKRGADLG-------ARDSEGRDPLTIAMETAN 313 (368)
T ss_dssp HHHHH----HTCHHHHHHHHHTTCCTT-------CCCTTSCCHHHHHHHTTC
T ss_pred HHHHH----cCcHHHHHHHHHCcCCCC-------CcCCCCCCHHHHHHHCCC
Confidence 99998 556789999999999998 788999999999999984
No 114
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.64 E-value=5e-18 Score=182.15 Aligned_cols=127 Identities=11% Similarity=0.024 Sum_probs=104.7
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCc
Q 006944 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADV 115 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVklLLe~~GADV 115 (624)
..+..|.||||.||..|+.++|++|++ .|++++..+. + +.+ .||||+||..|+.++|++||++ |+++
T Consensus 123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~i--------~--~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~ 189 (376)
T 2aja_A 123 VIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMI--------Q--AEN-YHAFRLAAENGHLHVLNRLCEL-APTE 189 (376)
T ss_dssp --CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHH--------S--HHH-HHHHHHHHHTTCHHHHHHHHHS-CGGG
T ss_pred HhccCCCCHHHHHHHcCCHHHHHHHHh-CCCCcccccc--------C--CCC-CCHHHHHHHCCCHHHHHHHHHc-CCcc
Confidence 345578899999999999999999999 8876432210 0 122 8999999999999999999999 9998
Q ss_pred cc--cCCCCCChHHHHHH-hCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006944 116 NL--SCGNDKSTALHCAA-SGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 116 N~--~~d~~G~TpLH~AA-~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
+. . +..|.||||+|+ ..|+ .++|++|++.|++ |.||||+|+..|+. +++++|++.|++++
T Consensus 190 ~~~~~-d~~g~TpL~~Aa~~~G~---~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~----evv~lL~~~ga~~~ 252 (376)
T 2aja_A 190 ATAMI-QAENYYAFRWAAVGRGH---HNVINFLLDCPVM-------LAYAEIHEFEYGEK----YVNPFIARHVNRLK 252 (376)
T ss_dssp HHHHH-HHHHHHHHHHHHSTTCC---HHHHHHHTTSHHH-------HHHHHHCTTTTTTT----THHHHHHHHHHHHH
T ss_pred chhcc-CCCCCCHHHHHHHHCCC---HHHHHHHHhCCCc-------cchHHHHHHHCCCH----HHHHHHHhcCcccc
Confidence 87 6 788999999999 9999 9999999998853 89999999996554 47777777776664
No 115
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.39 E-value=6.3e-14 Score=117.08 Aligned_cols=61 Identities=38% Similarity=0.836 Sum_probs=30.6
Q ss_pred CcccccCCCCC-CCCcCCCCCccccccccceeec---CCCccccccccCC---CCCCCCc-cCCCCCCCC
Q 006944 299 FHYSCVPCPDF-RKGACRRGDMCEYAHGVFECWL---HPAQYRTRLCKDG---TSCARRV-CFFAHTPEE 360 (624)
Q Consensus 299 ~~y~~~~C~~~-~~g~C~~gd~C~~aH~~~E~~~---hP~~ykT~~C~~~---~~C~~~~-C~faH~~~e 360 (624)
-+||+++|+.| ++|.|++|+.|.|+|+..|++. || .|||++|+.| |.|+++. |.|+|..+|
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccc-cccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 47999999999 6899999999999999999885 55 8999999875 8899985 999999877
No 116
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.95 E-value=5e-11 Score=97.99 Aligned_cols=62 Identities=26% Similarity=0.671 Sum_probs=57.5
Q ss_pred cccCCCCCCCCcCCCCC-ccccccccceeecCCCccccccccCC--CCCCCCccCCCCCCCCccC
Q 006944 302 SCVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCARRVCFFAHTPEELRP 363 (624)
Q Consensus 302 ~~~~C~~~~~g~C~~gd-~C~~aH~~~E~~~hP~~ykT~~C~~~--~~C~~~~C~faH~~~elr~ 363 (624)
+.+.|++|.+|.|.+|| .|.|+|...|.+.++..+|+..|++| |.|.++.|.|+|.+.+|+.
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQA 69 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCHHHHC
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHHHHhc
Confidence 55789999999999999 59999999999999999999999987 9999999999999998873
No 117
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.63 E-value=1e-08 Score=85.24 Aligned_cols=62 Identities=27% Similarity=0.582 Sum_probs=22.2
Q ss_pred cccccCC----CccCCCCccCCCCCCCcccccCCCCCCcccccCCCCC-CCCcCCCCCccccccccce
Q 006944 266 FKVRPCS----RAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDF-RKGACRRGDMCEYAHGVFE 328 (624)
Q Consensus 266 FK~~pC~----r~~sh~w~~Cp~~H~~~~~rRr~p~~~~y~~~~C~~~-~~g~C~~gd~C~~aH~~~E 328 (624)
||+..|. .+.|..++.|.|+| +..+.|.-++.-.|++.+|+.| ..|.|++|+.|.|+|+..|
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H-~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAH-GLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCS-SSCCGGGTC---------------------------------
T ss_pred ccchhCHHhhhCCCcCCCCCccCCC-CChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 6777776 45788899999999 5555665444557999999988 5899999999999999877
No 118
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.58 E-value=2.9e-08 Score=86.74 Aligned_cols=49 Identities=31% Similarity=0.621 Sum_probs=43.8
Q ss_pred cccccCCCCCCCCcCCCCCccccccccceeecCCCccccccccCC---CCCCCCc-cCCCCCCCC
Q 006944 300 HYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCARRV-CFFAHTPEE 360 (624)
Q Consensus 300 ~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C~~~---~~C~~~~-C~faH~~~e 360 (624)
.|++.+|+.|.+|.|.+||+|.|+|. +..|+.| |.|.++. |.|+|....
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~------------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG------------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 58999999999999999999999999 6789866 8999975 999998653
No 119
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=5e-09 Score=91.57 Aligned_cols=63 Identities=27% Similarity=0.650 Sum_probs=57.4
Q ss_pred ccccCCCCCCCCcCCCCC-ccccccccceeecCCCccccccccCC--CCCCCCccCCCCCCCCccC
Q 006944 301 YSCVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCARRVCFFAHTPEELRP 363 (624)
Q Consensus 301 y~~~~C~~~~~g~C~~gd-~C~~aH~~~E~~~hP~~ykT~~C~~~--~~C~~~~C~faH~~~elr~ 363 (624)
.+.+.|++|..|.|.+|| .|.|+|...+.+..+...++..|.+| |.|.|+.|.|.|.+.+|+.
T Consensus 18 ~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 18 DKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQA 83 (98)
T ss_dssp SEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred hhhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChHHHHH
Confidence 457789999889999999 79999999988877888999999998 9999999999999988874
No 120
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=8.8e-09 Score=83.52 Aligned_cols=50 Identities=26% Similarity=0.537 Sum_probs=40.7
Q ss_pred cccCCCCCCcccccCCCCCCCCcCCCCCccccccccceeec---CCCccccccccC
Q 006944 291 ARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWL---HPAQYRTRLCKD 343 (624)
Q Consensus 291 ~rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~~---hP~~ykT~~C~~ 343 (624)
|.-|.|.. +| ++|+.|.+|.|+||++|.||||..|++- .+...|+++|+.
T Consensus 11 W~~R~P~~-k~--~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~A 63 (69)
T 2d9m_A 11 WQHRFPTG-YF--SICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKA 63 (69)
T ss_dssp CCCCCCCS-CC--SBCHHHHHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSC
T ss_pred ccccCCCC-Cc--ccCcccCcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 44454542 33 9999999999999999999999999986 577889999874
No 121
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=4.9e-08 Score=81.53 Aligned_cols=58 Identities=26% Similarity=0.524 Sum_probs=48.9
Q ss_pred CCcccccCCCCCCCCcCCCCCccccccccceeecCCCccccccccCC---CCCCCCccCCCCCCCCcc
Q 006944 298 KFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCARRVCFFAHTPEELR 362 (624)
Q Consensus 298 ~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C~~~---~~C~~~~C~faH~~~elr 362 (624)
...+|+++|+.|.+|.|.+||.|.|+|...+ -|+..|+.| |.|....|.|+|...+.+
T Consensus 5 ~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 5 SSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMPECYFYSKFGECSNKECPFLHIDPESK 65 (77)
T ss_dssp CSCCTTSBCHHHHTTCCSCTTSSSSBCSCCT-------TTSCBCHHHHHTCCCCCSSCSSBCCCTTSS
T ss_pred CCCCcceeCHhHccCcCCCCCCCCCcccccc-------CcCCCCcccCCCCccCCCCeeccCCCcccc
Confidence 3468999999998899999999999999764 256789977 999966799999976654
No 122
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.24 E-value=1.3e-07 Score=78.04 Aligned_cols=56 Identities=27% Similarity=0.563 Sum_probs=46.5
Q ss_pred cccccCCCCCCCCcCCCCCccccccccceeecCCCccccccccCC---CCCCCCccCCCCCCCCcc
Q 006944 300 HYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCARRVCFFAHTPEELR 362 (624)
Q Consensus 300 ~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C~~~---~~C~~~~C~faH~~~elr 362 (624)
.+++++|+.|.+|.|.+||.|.|+|.... -|+..|+.| |.|.+..|.|.|...+.|
T Consensus 13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~y~H~~p~~k 71 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMSECYFYSKFGECSNKECPFLHIDPESK 71 (72)
T ss_dssp CCCCSBCHHHHTTCCCCGGGSSSBCSCCT-------TSCCBCHHHHHHSCCSBTTCCSBCCCCC--
T ss_pred CCcCeeCHHHhcCCCCCCCCCCCcccccc-------ccCCcccccCCCCCCCCCCeeccCCCcccc
Confidence 57889999998899999999999999542 367889975 899997799999876543
No 123
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.07 E-value=7.3e-07 Score=75.51 Aligned_cols=63 Identities=30% Similarity=0.699 Sum_probs=51.0
Q ss_pred cccccCCCCCCCCcCCCCC-ccccccccceeecCCCccccccccCC--CCCCCCccCCCCCCCCccCc
Q 006944 300 HYSCVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCARRVCFFAHTPEELRPL 364 (624)
Q Consensus 300 ~y~~~~C~~~~~g~C~~gd-~C~~aH~~~E~~~hP~~ykT~~C~~~--~~C~~~~C~faH~~~elr~~ 364 (624)
..+-+.|++|..|.|.+|| .|.|+|.......- .-+...|.+| |.|.++.|.|.|.+.+|..-
T Consensus 6 ~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~--~~~~~vC~dflkG~C~r~~C~y~H~~~~l~~~ 71 (83)
T 3d2n_A 6 WLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPPHLKTQ 71 (83)
T ss_dssp GGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEE--TTEEECCHHHHTTCCCCSSCSSCCCCHHHHHH
T ss_pred cccchhcHHHhcCCCCCCCCCCCCcCCCcccccc--CCceeehhHhhhccccCCCcceeCChHHHHHH
Confidence 5677889999889999998 99999997542211 3456789988 99999999999998877643
No 124
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=2.4e-06 Score=69.31 Aligned_cols=36 Identities=31% Similarity=0.620 Sum_probs=28.9
Q ss_pred eecC-CCccccccccCC--CCCCCCc-cCCCCCCCCccCc
Q 006944 329 CWLH-PAQYRTRLCKDG--TSCARRV-CFFAHTPEELRPL 364 (624)
Q Consensus 329 ~~~h-P~~ykT~~C~~~--~~C~~~~-C~faH~~~elr~~ 364 (624)
.|.| |.-.|++||+.| |.|+|+. |.|||+++|||..
T Consensus 10 ~W~~R~P~~k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~ 49 (69)
T 2d9m_A 10 CWQHRFPTGYFSICDRYMNGTCPEGNSCKFAHGNAELHEW 49 (69)
T ss_dssp CCCCCCCCSCCSBCHHHHHSCCSSCSSCSSBSSHHHHHHH
T ss_pred cccccCCCCCcccCcccCcCCCCCCCccCCcCCHHHHhhH
Confidence 3443 334588999987 8999985 9999999999974
No 125
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.76 E-value=3.5e-06 Score=72.22 Aligned_cols=62 Identities=31% Similarity=0.717 Sum_probs=50.0
Q ss_pred cccccCCCCCCCCcCCCCC-ccccccccceeecCCCccccccccCC--CCCCCCccCCCCCCCCccC
Q 006944 300 HYSCVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCARRVCFFAHTPEELRP 363 (624)
Q Consensus 300 ~y~~~~C~~~~~g~C~~gd-~C~~aH~~~E~~~hP~~ykT~~C~~~--~~C~~~~C~faH~~~elr~ 363 (624)
--+.+.|++|.+|.|.+|| .|.|+|.......- .-+...|.+| |.|.+..|.|.|.+..|..
T Consensus 14 ~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~--~~~~~vC~dflkG~C~r~~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 14 WLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPTHLKT 78 (89)
T ss_dssp SSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCB--TTBEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred cchhhhchHHhcCCCCCCCCCCCCcCCCcccccc--CCceeeehhhhhCcCCCCCcceecCHHHHHH
Confidence 4566789999889999999 99999987643221 3367789988 9999999999999877653
No 126
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.51 E-value=4.6e-05 Score=66.42 Aligned_cols=47 Identities=28% Similarity=0.722 Sum_probs=38.3
Q ss_pred cccccCC---CccCCCCccCCCCCCCcccccCCCCCCcccccCCCCC-CCCcCCCCCccccccccc
Q 006944 266 FKVRPCS---RAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDF-RKGACRRGDMCEYAHGVF 327 (624)
Q Consensus 266 FK~~pC~---r~~sh~w~~Cp~~H~~~~~rRr~p~~~~y~~~~C~~~-~~g~C~~gd~C~~aH~~~ 327 (624)
+|...|. ++.|..++.|+|.|. +.+|+.| .+|.|++|+.|.|+|...
T Consensus 11 ~k~~lC~~f~~G~C~~G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCccCcccccCcCCCCCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 3455554 467778889999994 6789999 699999999999999853
No 127
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=4.7e-05 Score=63.36 Aligned_cols=61 Identities=23% Similarity=0.433 Sum_probs=45.5
Q ss_pred cccccCC---CccCCCCccCCCCCCCcccccCCCCCCcccccCCCCCCC-CcCCCCCccccccccceeecCCCccccccc
Q 006944 266 FKVRPCS---RAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRK-GACRRGDMCEYAHGVFECWLHPAQYRTRLC 341 (624)
Q Consensus 266 FK~~pC~---r~~sh~w~~Cp~~H~~~~~rRr~p~~~~y~~~~C~~~~~-g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C 341 (624)
+|+..|. ++.|..++.|+|.|. .... +..+|+.|.+ |.|. |+.|.|+|...+ -++..|
T Consensus 8 ~k~~~C~~fl~G~C~~G~~C~fsH~-~~~~---------~~~~C~~f~~~G~C~-~~~C~f~H~~~~-------~~~~~C 69 (77)
T 2d9n_A 8 EKTVVCKHWLRGLCKKGDQCEFLHE-YDMT---------KMPECYFYSKFGECS-NKECPFLHIDPE-------SKIKDC 69 (77)
T ss_dssp CTTSBCHHHHTTCCSCTTSSSSBCS-CCTT---------TSCBCHHHHHTCCCC-CSSCSSBCCCTT-------SSCSSS
T ss_pred CcceeCHhHccCcCCCCCCCCCccc-cccC---------cCCCCcccCCCCccC-CCCeeccCCCcc-------ccCCCC
Confidence 4555665 577888889999994 3221 2457999977 9999 899999999654 367778
Q ss_pred cCC
Q 006944 342 KDG 344 (624)
Q Consensus 342 ~~~ 344 (624)
..|
T Consensus 70 ~~f 72 (77)
T 2d9n_A 70 PWS 72 (77)
T ss_dssp SCC
T ss_pred ccc
Confidence 766
No 128
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=97.33 E-value=4.4e-05 Score=62.39 Aligned_cols=54 Identities=28% Similarity=0.573 Sum_probs=41.5
Q ss_pred CccCCCCc-cCCCCCCCcccccCCCCCCcccccCCCCCCCCcCCCCCccccccccceee
Q 006944 273 RAYSHDWT-ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECW 330 (624)
Q Consensus 273 r~~sh~w~-~Cp~~H~~~~~rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~ 330 (624)
++.|..++ +|+|+|+.+ .-+-++. .++...|.+|.+|.|.+| .|.|.|...+++
T Consensus 14 ~G~C~rg~~~C~f~H~~~-~~~~~~~--~~~~~vC~~flkG~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 14 RGNCNRGENDCRFAHPAD-STMIDTN--DNTVTVCMDYIKGRCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp TTCCSSCTTTCSSBCCCT-TSCCBTT--TTEEEBCHHHHTTCCCCT-TCCSBCCCHHHH
T ss_pred cCCCCCCCCCCCCccCcc-ccccccc--CCcceeccccCcCCCCCC-CcCeeCCHHHHh
Confidence 56777777 699999543 2222233 578899999999999999 999999987764
No 129
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.79 E-value=0.00022 Score=62.16 Aligned_cols=60 Identities=28% Similarity=0.575 Sum_probs=44.8
Q ss_pred ccccCC---CccCCCCc-cCCCCCCCcccccCCCCCCcccccCCCCCCCCcCCCCCccccccccceee
Q 006944 267 KVRPCS---RAYSHDWT-ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECW 330 (624)
Q Consensus 267 K~~pC~---r~~sh~w~-~Cp~~H~~~~~rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~ 330 (624)
|+..|. ++.|..++ +|+|+|+... -+.++. ..+...|.+|.+|.|.+| .|.|.|...++.
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~-~~~~~~--~~~~~vC~~flkG~C~r~-~C~y~H~~~~l~ 82 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADS-TMIDTS--DNTVTVCMDYIKGRCMRE-KCKYFHPPAHLQ 82 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSC-CSCCTT--TCEEEBCHHHHHTCCCCT-TCCSBCCCHHHH
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchh-cccccc--CCccccchhhccCCCCCC-CcCccCChHHHH
Confidence 444564 56777777 7999996542 222333 578889999999999999 999999987654
No 130
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.44 E-value=0.00065 Score=55.76 Aligned_cols=53 Identities=25% Similarity=0.456 Sum_probs=39.8
Q ss_pred cccccCC---CccCCCCccCCCCCCCcccccCCCCCCcccccCCCCCCC-CcCCCCCcccccccccee
Q 006944 266 FKVRPCS---RAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRK-GACRRGDMCEYAHGVFEC 329 (624)
Q Consensus 266 FK~~pC~---r~~sh~w~~Cp~~H~~~~~rRr~p~~~~y~~~~C~~~~~-g~C~~gd~C~~aH~~~E~ 329 (624)
.+...|. ++.|..++.|+|.|.-. +. +..+|..|.+ |.|.+ +.|.|.|...+.
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~~~------~~----~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHEYD------MT----KMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCSCC------TT----SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CcCeeCHHHhcCCCCCCCCCCCccccc------cc----cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 3455564 67788888999999422 11 3568999988 99999 999999987653
No 131
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=94.40 E-value=0.0026 Score=53.20 Aligned_cols=64 Identities=23% Similarity=0.640 Sum_probs=45.1
Q ss_pred ccCCCc-cCCCCccCCCCCCCcccccCCCCCCcccccCCCCCCCCcCCCCCccccccccceeecCCCccccccccCCCCC
Q 006944 269 RPCSRA-YSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSC 347 (624)
Q Consensus 269 ~pC~r~-~sh~w~~Cp~~H~~~~~rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C~~~~~C 347 (624)
+.|.-+ .+.+ ..|+|.|+.. ..+|+.+.. |.+ ..|.|+|.. .+.|+.+..|
T Consensus 10 e~CKf~~~Ctn-~~C~f~Hp~~-------------~~~Cr~g~~--C~~-~~C~f~HP~-----------~~~Crf~~~C 61 (80)
T 2lhn_A 10 EQCKFGTHCTN-KRCKYRHARS-------------HIMCREGAN--CTR-IDCLFGHPI-----------NEDCRFGVNC 61 (80)
Confidence 445322 3455 7899999532 346777765 887 468898852 3679877899
Q ss_pred CCCccCCCCCCCC
Q 006944 348 ARRVCFFAHTPEE 360 (624)
Q Consensus 348 ~~~~C~faH~~~e 360 (624)
.+..|.|.|-+..
T Consensus 62 ~n~~C~F~Hp~g~ 74 (80)
T 2lhn_A 62 KNIYCLFRHPPGR 74 (80)
Confidence 9999999996443
No 132
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=95.11 E-value=0.0062 Score=51.34 Aligned_cols=57 Identities=28% Similarity=0.511 Sum_probs=40.4
Q ss_pred ccccCC---CccCCCCc-cCCCCCCCcccccCCCCCCcccccCCCCCCCCcCCCCCcccccccccee
Q 006944 267 KVRPCS---RAYSHDWT-ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFEC 329 (624)
Q Consensus 267 K~~pC~---r~~sh~w~-~Cp~~H~~~~~rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~ 329 (624)
++..|. ++.|...+ +|.|+|+... .....-+...|.+|.+|.|.++ .|.|.|...++
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~-----~~~~~~~~~vC~dflkG~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSKS-----CQVENGRVIACFDSLKGRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCTT-----CCEETTEEECCHHHHTTCCCCS-SCSSCCCCHHH
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCcc-----ccccCCceeehhHhhhccccCC-CcceeCChHHH
Confidence 344454 56677775 8999996432 1111335677999999999999 99999997654
No 133
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=93.00 E-value=0.01 Score=49.66 Aligned_cols=42 Identities=29% Similarity=0.744 Sum_probs=34.8
Q ss_pred ccCCCCCCCCcCCCCCccccccccceeecCCCccccccccCCCCCCCCccCCCCC
Q 006944 303 CVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCARRVCFFAHT 357 (624)
Q Consensus 303 ~~~C~~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C~~~~~C~~~~C~faH~ 357 (624)
-+.|+.+.. |++ +.|.|+|... ...|+.|..|.+..|.|+|-
T Consensus 9 ~e~CKf~~~--Ctn-~~C~f~Hp~~----------~~~Cr~g~~C~~~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGTH--CTN-KRCKYRHARS----------HIMCREGANCTRIDCLFGHP 50 (80)
Confidence 356877776 999 8999999642 34799999999999999995
No 134
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=93.35 E-value=0.017 Score=49.25 Aligned_cols=50 Identities=30% Similarity=0.572 Sum_probs=37.0
Q ss_pred CccCCCCc-cCCCCCCCcccccCCCCCCcccccCCCCCCCCcCCCCCccccccccce
Q 006944 273 RAYSHDWT-ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFE 328 (624)
Q Consensus 273 r~~sh~w~-~Cp~~H~~~~~rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E 328 (624)
++.|...+ +|.|+|+....... .-+-..|.+|.+|.|.++ .|.|.|....
T Consensus 25 rG~C~r~d~~CrfsH~~~~~~v~-----~~~~~vC~dflkG~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 25 RGTCSRSDEECKFAHPPKSCQVE-----NGRVIACFDSLKGRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp HTCCCCCTTTSSSBCCCSSSCCB-----TTBEEBCHHHHHTCCCCT-TCCSBCCCHH
T ss_pred cCCCCCCCCCCCCcCCCcccccc-----CCceeeehhhhhCcCCCC-CcceecCHHH
Confidence 46677776 99999975532111 224667999999999998 9999998654
No 135
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=89.11 E-value=0.075 Score=40.05 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=23.9
Q ss_pred ccccCCCCC-CCCcCCCCCccccccccc
Q 006944 301 YSCVPCPDF-RKGACRRGDMCEYAHGVF 327 (624)
Q Consensus 301 y~~~~C~~~-~~g~C~~gd~C~~aH~~~ 327 (624)
.++.+|..| ..|-|++|.+|.+.|.+.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 678899999 679999999999999863
No 136
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=85.09 E-value=0.28 Score=36.97 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.1
Q ss_pred cccccccCC---CCCCCCc-cCCCCCCC
Q 006944 336 YRTRLCKDG---TSCARRV-CFFAHTPE 359 (624)
Q Consensus 336 ykT~~C~~~---~~C~~~~-C~faH~~~ 359 (624)
++|.+|+.| |.|+++. |.|.|+.+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 789999976 9999985 99999875
No 137
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=77.81 E-value=0.37 Score=48.23 Aligned_cols=24 Identities=42% Similarity=0.777 Sum_probs=21.4
Q ss_pred ccCCCCCCCCcCCCCCcccccccc
Q 006944 303 CVPCPDFRKGACRRGDMCEYAHGV 326 (624)
Q Consensus 303 ~~~C~~~~~g~C~~gd~C~~aH~~ 326 (624)
.-.|..|.+|.|.+|+.|.|.|.+
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSC
T ss_pred CeEcCccccCCCCCCCCCCccCCC
Confidence 348999999999999999999974
No 138
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=66.73 E-value=1.4 Score=43.53 Aligned_cols=32 Identities=34% Similarity=0.662 Sum_probs=2.1
Q ss_pred ccCCCCCCcccccCCCCCCCCcCCCCCccccccc
Q 006944 292 RRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHG 325 (624)
Q Consensus 292 rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~ 325 (624)
.|..|..-.-+..+||..++ |+||.+|.|-|.
T Consensus 181 L~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 212 (223)
T 3v33_A 181 LRKKPLTLEHRKQPCPYGRK--CTYGIKCRFFHP 212 (223)
T ss_dssp TBSCC-----------------------------
T ss_pred hccCCCCcccCCCCCCCCcc--cccCCcceecCC
Confidence 34444433345678888887 999999999887
No 139
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=65.95 E-value=3.3 Score=40.85 Aligned_cols=45 Identities=22% Similarity=0.555 Sum_probs=36.0
Q ss_pred cccccCCCCCCC-----CcCCCCCccccccccceeecCCCccccccccCC--CCCCCCccCCCCCCCC
Q 006944 300 HYSCVPCPDFRK-----GACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG--TSCARRVCFFAHTPEE 360 (624)
Q Consensus 300 ~y~~~~C~~~~~-----g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C~~~--~~C~~~~C~faH~~~e 360 (624)
..-+++|..| + |.|.++++|..-| .|+.| |.|.+..|.=.|+..+
T Consensus 148 ~lLPeiC~~Y-kG~g~~g~C~~~~~C~kLH---------------IC~~Fl~G~C~f~~CkRsH~~~~ 199 (229)
T 3u9g_A 148 FFLPEICKSY-KGEGRKQTCGQPQPCERLH---------------ICEHFTRGNCSYLNCLRSHNLMD 199 (229)
T ss_dssp GGSCCBCTTC-CCSSSCCSCSSSSCCCSBC---------------SCHHHHTTCCCCSSCSSCCCTTS
T ss_pred ccCchHHHHh-CCCCCCCcCCCCCCCccee---------------ccchhhcCCcCCCCccCccCccC
Confidence 3568999999 6 4899999998666 48777 8899877988888644
No 140
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=24.44 E-value=1.2e+02 Score=32.81 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=77.5
Q ss_pred cChHHHHHHHHcCC--------------HHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHH
Q 006944 40 DAFASLLELAANND--------------VEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIR 105 (624)
Q Consensus 40 dg~TpLh~AA~~Gd--------------le~Vk~LLe~~GadvN~~~l~~~r~~~~~~~D~~G~TPLhlAA~~G~~dIVk 105 (624)
.-++.|+.|+.... .++++.+.+ .|..+|...+ .+.+...+..|..+-+.
T Consensus 62 ~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~ty---------------n~lI~~~~~~g~~~~A~ 125 (501)
T 4g26_A 62 YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-DKVVPNEATF---------------TNGARLAVAKDDPEMAF 125 (501)
T ss_dssp HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHHHH---------------HHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-hCCCCCHHHH---------------HHHHHHHHhcCCHHHHH
Confidence 34566776665432 234555555 7777776531 24456667888877665
Q ss_pred HHHHh---cCCCccccCCCCCChHHHHHHhCCCC-ChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHH
Q 006944 106 LILSE---SGADVNLSCGNDKSTALHCAASGGAL-NAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEE 181 (624)
Q Consensus 106 lLLe~---~GADVN~~~d~~G~TpLH~AA~~G~~-~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~ 181 (624)
.|++. .|..+|.. . -.+.|...+..|.. .+.++.+.+.+.|..++.... .+-+...+..|..+....+++.
T Consensus 126 ~l~~~M~~~g~~Pd~~-t--yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 126 DMVKQMKAFGIQPRLR-S--YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHHTTCCCCHH-H--HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccc-e--ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHhhCCCHHHHHHHHHH
Confidence 55532 26666654 1 12344555677772 123445555677887776443 2344455567888888889998
Q ss_pred HHHCCCCCc
Q 006944 182 LLATDGSVE 190 (624)
Q Consensus 182 LL~~gadv~ 190 (624)
+.+.+..++
T Consensus 201 Mr~~g~~ps 209 (501)
T 4g26_A 201 LRDLVRQVS 209 (501)
T ss_dssp HHHHTSSBC
T ss_pred HHHhCCCcC
Confidence 888887665
No 141
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=22.46 E-value=18 Score=35.57 Aligned_cols=23 Identities=30% Similarity=0.725 Sum_probs=0.0
Q ss_pred ccccccCCCCCCCCc-cCCCCCCC
Q 006944 337 RTRLCKDGTSCARRV-CFFAHTPE 359 (624)
Q Consensus 337 kT~~C~~~~~C~~~~-C~faH~~~ 359 (624)
|.+.|-.+..|.|+. |.|.|-+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGRKCTYGIKCRFFHPER 214 (223)
T ss_dssp ------------------------
T ss_pred CCCCCCCCcccccCCcceecCCcc
Confidence 456677777777775 88888654
Done!