Query 006945
Match_columns 624
No_of_seqs 145 out of 155
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 16:44:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08678 C2_C21orf25-like C2 do 98.3 2E-05 4.3E-10 70.9 13.1 125 92-226 1-126 (126)
2 cd04042 C2A_MCTP_PRT C2 domain 98.2 2E-05 4.4E-10 70.1 12.7 119 91-221 1-121 (121)
3 cd04013 C2_SynGAP_like C2 doma 98.0 9.4E-05 2E-09 70.4 13.1 128 87-224 8-143 (146)
4 cd08400 C2_Ras_p21A1 C2 domain 98.0 0.00011 2.4E-09 66.7 12.6 120 89-221 3-124 (126)
5 cd04015 C2_plant_PLD C2 domain 97.8 0.00025 5.3E-09 67.4 12.5 100 110-220 58-158 (158)
6 cd08682 C2_Rab11-FIP_classI C2 97.7 0.00032 6.8E-09 63.1 10.6 104 92-204 1-112 (126)
7 cd04019 C2C_MCTP_PRT_plant C2 97.7 0.00046 9.9E-09 65.2 12.1 121 92-221 2-133 (150)
8 PRK10737 FKBP-type peptidyl-pr 97.7 1.6E-05 3.4E-10 79.1 2.1 62 325-389 18-85 (196)
9 cd04016 C2_Tollip C2 domain pr 97.7 0.00051 1.1E-08 63.0 11.6 113 92-218 4-120 (121)
10 cd04043 C2_Munc13_fungal C2 do 97.7 0.00074 1.6E-08 60.2 12.1 104 93-202 4-111 (126)
11 cd04050 C2B_Synaptotagmin-like 97.6 0.00047 1E-08 60.2 10.0 99 92-202 2-103 (105)
12 cd08681 C2_fungal_Inn1p-like C 97.6 0.00065 1.4E-08 59.9 10.4 99 92-203 3-106 (118)
13 cd08373 C2A_Ferlin C2 domain f 97.6 0.0013 2.8E-08 59.1 12.1 115 96-224 2-120 (127)
14 cd04033 C2_NEDD4_NEDD4L C2 dom 97.5 0.0018 3.9E-08 58.3 12.0 122 92-219 2-132 (133)
15 cd08376 C2B_MCTP_PRT C2 domain 97.5 0.0027 5.8E-08 55.8 12.7 101 92-203 2-105 (116)
16 cd08382 C2_Smurf-like C2 domai 97.4 0.0024 5.2E-08 57.5 11.9 106 91-204 1-108 (123)
17 TIGR03601 B_an_ocin probable h 97.4 0.00011 2.4E-09 62.7 2.9 7 489-495 42-48 (79)
18 cd08688 C2_KIAA0528-like C2 do 97.4 0.001 2.2E-08 58.8 8.9 101 93-201 2-109 (110)
19 cd04022 C2A_MCTP_PRT_plant C2 97.3 0.0037 8E-08 56.3 12.2 119 92-220 2-126 (127)
20 TIGR03601 B_an_ocin probable h 97.3 0.00015 3.3E-09 61.8 3.0 8 489-496 45-52 (79)
21 COG1047 SlpA FKBP-type peptidy 97.3 0.00015 3.1E-09 71.3 3.2 63 326-391 19-88 (174)
22 cd08378 C2B_MCTP_PRT_plant C2 97.3 0.0022 4.7E-08 58.1 10.5 101 92-204 2-106 (121)
23 cd08379 C2D_MCTP_PRT_plant C2 97.3 0.0044 9.5E-08 57.4 12.2 118 92-215 2-125 (126)
24 cd08385 C2A_Synaptotagmin-1-5- 97.3 0.0022 4.7E-08 57.2 9.8 101 92-200 18-123 (124)
25 cd04014 C2_PKC_epsilon C2 doma 97.3 0.0035 7.5E-08 56.8 11.1 103 92-202 6-119 (132)
26 cd04036 C2_cPLA2 C2 domain pre 97.2 0.0055 1.2E-07 54.5 12.1 102 92-202 2-106 (119)
27 cd04024 C2A_Synaptotagmin-like 97.2 0.0049 1.1E-07 54.7 11.8 105 92-204 3-112 (128)
28 cd04044 C2A_Tricalbin-like C2 97.2 0.0037 8E-08 55.1 10.8 118 92-221 4-124 (124)
29 cd08387 C2A_Synaptotagmin-8 C2 97.2 0.0041 8.8E-08 55.6 10.5 100 92-200 18-123 (124)
30 cd08388 C2A_Synaptotagmin-4-11 97.2 0.0048 1E-07 56.4 11.0 104 91-201 17-128 (128)
31 cd04045 C2C_Tricalbin-like C2 97.1 0.0027 5.9E-08 57.4 9.2 101 92-203 3-105 (120)
32 cd08394 C2A_Munc13 C2 domain f 97.1 0.0027 5.8E-08 59.6 9.2 98 92-202 4-102 (127)
33 cd04011 C2B_Ferlin C2 domain s 97.1 0.0051 1.1E-07 54.1 10.2 101 90-201 4-110 (111)
34 cd08390 C2A_Synaptotagmin-15-1 97.1 0.0053 1.1E-07 54.4 10.2 102 92-201 16-123 (123)
35 cd08391 C2A_C2C_Synaptotagmin_ 97.1 0.0073 1.6E-07 53.0 10.9 99 92-202 3-110 (121)
36 cd04051 C2_SRC2_like C2 domain 97.1 0.0059 1.3E-07 54.5 10.5 104 92-203 2-116 (125)
37 cd04030 C2C_KIAA1228 C2 domain 97.0 0.0048 1E-07 54.9 9.6 103 92-200 18-127 (127)
38 cd08386 C2A_Synaptotagmin-7 C2 97.0 0.0049 1.1E-07 54.9 9.3 102 91-201 17-125 (125)
39 cd04021 C2_E3_ubiquitin_ligase 97.0 0.0059 1.3E-07 55.4 9.7 106 91-203 3-110 (125)
40 cd04029 C2A_SLP-4_5 C2 domain 97.0 0.0062 1.4E-07 55.4 9.9 100 92-200 17-125 (125)
41 cd04031 C2A_RIM1alpha C2 domai 97.0 0.0068 1.5E-07 53.7 9.9 100 92-200 18-125 (125)
42 cd08383 C2A_RasGAP C2 domain ( 96.9 0.016 3.4E-07 50.7 11.6 114 92-219 2-117 (117)
43 cd04040 C2D_Tricalbin-like C2 96.9 0.0094 2E-07 52.2 10.1 103 93-205 2-107 (115)
44 cd08675 C2B_RasGAP C2 domain s 96.9 0.0079 1.7E-07 55.8 9.9 104 93-204 2-123 (137)
45 cd04049 C2_putative_Elicitor-r 96.9 0.0069 1.5E-07 54.1 9.1 99 92-202 3-109 (124)
46 cd04041 C2A_fungal C2 domain f 96.8 0.0052 1.1E-07 54.3 8.0 99 92-201 3-108 (111)
47 cd08389 C2A_Synaptotagmin-14_1 96.8 0.0091 2E-07 54.2 9.6 99 92-201 18-124 (124)
48 cd08409 C2B_Synaptotagmin-15 C 96.7 0.014 3E-07 54.0 10.1 102 92-199 17-136 (137)
49 cd04025 C2B_RasA1_RasA4 C2 dom 96.7 0.026 5.6E-07 50.4 11.4 101 92-203 2-105 (123)
50 cd08685 C2_RGS-like C2 domain 96.7 0.013 2.7E-07 53.2 9.5 100 92-199 14-119 (119)
51 cd08393 C2A_SLP-1_2 C2 domain 96.7 0.014 2.9E-07 53.0 9.7 101 91-200 16-125 (125)
52 cd08377 C2C_MCTP_PRT C2 domain 96.7 0.032 7E-07 49.0 11.8 98 92-202 3-102 (119)
53 cd04054 C2A_Rasal1_RasA4 C2 do 96.7 0.03 6.5E-07 50.3 11.7 117 92-218 2-120 (121)
54 cd04026 C2_PKC_alpha_gamma C2 96.6 0.012 2.6E-07 53.0 8.9 102 92-202 15-122 (131)
55 cd04046 C2_Calpain C2 domain p 96.6 0.053 1.1E-06 49.1 12.9 117 91-221 4-123 (126)
56 cd00030 C2 C2 domain. The C2 d 96.6 0.014 3E-07 46.7 8.1 98 93-199 2-102 (102)
57 cd04010 C2B_RasA3 C2 domain se 96.5 0.03 6.5E-07 53.2 11.4 104 92-203 2-124 (148)
58 cd04017 C2D_Ferlin C2 domain f 96.5 0.045 9.6E-07 50.1 11.9 118 91-220 2-132 (135)
59 cd00276 C2B_Synaptotagmin C2 d 96.5 0.027 5.9E-07 50.3 10.1 102 92-203 16-124 (134)
60 cd08381 C2B_PI3K_class_II C2 d 96.4 0.02 4.4E-07 51.9 9.2 99 92-199 15-121 (122)
61 cd08392 C2A_SLP-3 C2 domain fi 96.4 0.028 6E-07 51.8 10.1 103 92-200 17-128 (128)
62 cd08521 C2A_SLP C2 domain firs 96.4 0.023 5.1E-07 50.2 9.3 99 92-199 16-123 (123)
63 PRK15095 FKBP-type peptidyl-pr 96.4 0.0014 3E-08 62.9 1.5 63 325-390 20-89 (156)
64 cd08375 C2_Intersectin C2 doma 96.4 0.066 1.4E-06 49.7 12.4 116 90-219 15-135 (136)
65 cd04047 C2B_Copine C2 domain s 96.3 0.026 5.7E-07 49.2 8.9 89 93-187 3-101 (110)
66 cd00275 C2_PLC_like C2 domain 96.3 0.091 2E-06 46.5 12.3 104 90-205 2-114 (128)
67 cd04052 C2B_Tricalbin-like C2 96.2 0.02 4.3E-07 50.8 7.8 73 135-221 36-110 (111)
68 PLN03008 Phospholipase D delta 96.2 0.059 1.3E-06 63.9 13.5 89 135-232 100-189 (868)
69 cd08408 C2B_Synaptotagmin-14_1 96.2 0.041 8.9E-07 51.3 9.9 102 92-199 17-137 (138)
70 cd04027 C2B_Munc13 C2 domain s 96.2 0.11 2.4E-06 47.1 12.4 105 91-203 2-114 (127)
71 cd04035 C2A_Rabphilin_Doc2 C2 96.1 0.037 8.1E-07 49.3 9.1 90 92-187 17-114 (123)
72 cd08402 C2B_Synaptotagmin-1 C2 96.1 0.036 7.7E-07 50.5 9.1 87 92-183 17-110 (136)
73 PLN02270 phospholipase D alpha 96.0 0.059 1.3E-06 63.6 12.6 89 135-232 71-160 (808)
74 smart00239 C2 Protein kinase C 95.8 0.068 1.5E-06 43.3 8.7 91 92-187 2-95 (101)
75 cd08395 C2C_Munc13 C2 domain t 95.8 0.1 2.3E-06 48.0 10.6 103 92-202 2-113 (120)
76 cd08401 C2A_RasA2_RasA3 C2 dom 95.8 0.23 4.9E-06 45.0 12.5 101 92-202 2-105 (121)
77 cd08403 C2B_Synaptotagmin-3-5- 95.7 0.086 1.9E-06 47.9 9.7 101 92-202 16-123 (134)
78 PF00168 C2: C2 domain; Inter 95.7 0.065 1.4E-06 43.0 7.9 81 92-177 1-84 (85)
79 cd08676 C2A_Munc13-like C2 dom 95.6 0.081 1.7E-06 50.8 9.3 98 89-199 27-153 (153)
80 cd08691 C2_NEDL1-like C2 domai 95.5 0.17 3.6E-06 47.6 10.9 106 93-202 4-122 (137)
81 cd08405 C2B_Synaptotagmin-7 C2 95.5 0.11 2.5E-06 47.3 9.6 101 92-202 17-124 (136)
82 cd04028 C2B_RIM1alpha C2 domai 95.4 0.14 3E-06 48.9 10.4 105 91-203 30-140 (146)
83 cd08406 C2B_Synaptotagmin-12 C 95.4 0.12 2.5E-06 48.4 9.7 101 92-199 17-135 (136)
84 cd04020 C2B_SLP_1-2-3-4 C2 dom 95.4 0.077 1.7E-06 50.8 8.5 102 92-201 29-138 (162)
85 cd04032 C2_Perforin C2 domain 95.2 0.16 3.5E-06 47.2 9.9 95 85-187 23-120 (127)
86 cd08404 C2B_Synaptotagmin-4 C2 95.2 0.21 4.5E-06 45.7 10.2 102 91-202 16-124 (136)
87 cd04038 C2_ArfGAP C2 domain pr 95.1 0.14 3.1E-06 48.5 9.2 88 92-187 4-92 (145)
88 cd08384 C2B_Rabphilin_Doc2 C2 95.1 0.17 3.7E-06 45.7 9.4 100 92-202 15-122 (133)
89 cd08680 C2_Kibra C2 domain fou 95.0 0.14 3.1E-06 47.2 8.8 99 92-199 16-124 (124)
90 cd04009 C2B_Munc13-like C2 dom 94.9 0.16 3.5E-06 46.4 8.9 93 92-189 18-121 (133)
91 cd04018 C2C_Ferlin C2 domain t 94.3 0.38 8.3E-06 46.0 10.0 101 92-200 2-124 (151)
92 cd08690 C2_Freud-1 C2 domain f 93.9 1.7 3.6E-05 42.2 13.7 126 92-229 4-146 (155)
93 cd04048 C2A_Copine C2 domain f 93.9 0.68 1.5E-05 41.3 10.3 102 97-202 7-115 (120)
94 cd04039 C2_PSD C2 domain prese 93.4 0.53 1.1E-05 42.1 8.7 88 92-187 3-98 (108)
95 cd04037 C2E_Ferlin C2 domain f 93.1 0.74 1.6E-05 41.7 9.3 89 92-186 2-93 (124)
96 PLN03200 cellulose synthase-in 92.8 0.49 1.1E-05 61.1 10.3 123 79-215 1969-2097(2102)
97 cd08407 C2B_Synaptotagmin-13 C 92.3 1.2 2.5E-05 42.1 9.9 101 92-198 17-136 (138)
98 cd08410 C2B_Synaptotagmin-17 C 92.1 1.1 2.5E-05 41.1 9.3 102 92-202 16-124 (135)
99 cd08677 C2A_Synaptotagmin-13 C 92.0 1 2.2E-05 41.9 8.9 99 91-199 15-118 (118)
100 COG4278 Uncharacterized conser 92.0 0.22 4.8E-06 51.6 4.9 7 471-477 216-222 (269)
101 PF10358 NT-C2: N-terminal C2 91.6 4.4 9.5E-05 37.1 12.5 119 88-221 5-136 (143)
102 PLN02352 phospholipase D epsil 90.2 2.5 5.4E-05 50.3 11.8 107 110-234 36-144 (758)
103 COG4278 Uncharacterized conser 89.1 0.55 1.2E-05 48.8 4.8 6 541-546 254-259 (269)
104 cd08692 C2B_Tac2-N C2 domain s 83.2 9 0.00019 36.6 9.2 103 92-201 16-123 (135)
105 KOG2059 Ras GTPase-activating 83.0 3.1 6.7E-05 49.0 7.2 116 90-225 5-130 (800)
106 TIGR03516 ppisom_GldI peptidyl 78.9 1.2 2.5E-05 44.0 1.8 52 324-378 100-155 (177)
107 KOG1028 Ca2+-dependent phospho 77.2 32 0.00069 38.3 12.5 105 90-203 167-277 (421)
108 PF00254 FKBP_C: FKBP-type pep 76.5 1.5 3.2E-05 37.4 1.5 50 326-378 21-75 (94)
109 cd08374 C2F_Ferlin C2 domain s 76.4 22 0.00048 33.8 9.5 91 91-187 1-124 (133)
110 KOG0544 FKBP-type peptidyl-pro 70.9 4.6 9.9E-05 37.3 3.3 50 326-378 33-87 (108)
111 cd08686 C2_ABR C2 domain in th 56.6 70 0.0015 30.1 8.4 85 93-181 2-90 (118)
112 cd08683 C2_C2cd3 C2 domain fou 56.1 20 0.00043 35.0 4.8 49 149-199 90-143 (143)
113 KOG1028 Ca2+-dependent phospho 55.0 60 0.0013 36.3 9.0 106 91-201 299-420 (421)
114 KOG0771 Prolactin regulatory e 51.9 45 0.00097 37.4 7.3 84 322-410 288-384 (398)
115 PF14043 WVELL: WVELL protein 49.4 5.3 0.00011 35.0 -0.1 31 23-54 17-49 (75)
116 PRK11570 peptidyl-prolyl cis-t 48.2 11 0.00023 38.2 1.8 50 326-378 133-185 (206)
117 KOG0696 Serine/threonine prote 45.7 20 0.00043 40.9 3.5 100 91-200 181-287 (683)
118 KOG1031 Predicted Ca2+-depende 41.0 82 0.0018 37.3 7.4 98 92-202 5-121 (1169)
119 PLN02952 phosphoinositide phos 34.2 4.6E+02 0.0099 31.2 12.2 83 111-204 498-584 (599)
120 COG0545 FkpA FKBP-type peptidy 33.9 29 0.00063 35.7 2.3 49 326-378 132-184 (205)
121 PF11141 DUF2914: Protein of u 29.5 72 0.0016 26.9 3.6 24 251-274 41-65 (66)
122 KOG0279 G protein beta subunit 29.2 5.6E+02 0.012 28.2 10.8 83 295-386 135-224 (315)
123 KOG1030 Predicted Ca2+-depende 27.1 2.6E+02 0.0057 28.1 7.6 87 92-187 8-97 (168)
124 COG5038 Ca2+-dependent lipid-b 26.6 2.9E+02 0.0064 35.2 9.2 124 92-225 581-712 (1227)
125 PF06219 DUF1005: Protein of u 26.4 9E+02 0.02 27.9 12.2 77 153-231 95-189 (460)
126 PRK10902 FKBP-type peptidyl-pr 24.0 51 0.0011 34.9 2.2 50 325-378 176-229 (269)
127 KOG0549 FKBP-type peptidyl-pro 24.0 87 0.0019 32.0 3.6 66 324-392 99-177 (188)
128 PRK10862 SoxR reducing system 21.5 50 0.0011 32.0 1.4 18 577-594 22-41 (154)
129 COG2260 Predicted Zn-ribbon RN 21.4 27 0.00058 29.6 -0.4 14 365-378 32-45 (59)
No 1
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=98.25 E-value=2e-05 Score=70.93 Aligned_cols=125 Identities=19% Similarity=0.254 Sum_probs=90.3
Q ss_pred EEEEEEeecCcCCCcCCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCccccCCC
Q 006945 92 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGA 170 (624)
Q Consensus 92 V~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~r~ 170 (624)
+.|.|++++|||. .....+-||.+...++....+. +-..-..++.|.+...|... ....|.|++.-+.. +.+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT-~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~-----~~~ 73 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQS-STQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGK-----KSD 73 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEe-EEEecCCCCccCceEEEEeCCCCCEEEEEEEECCC-----CCC
Confidence 3578999999998 4445788888876532221222 22223357899988888776 37789999887766 357
Q ss_pred cccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCeeEEEEEeeecCCccc
Q 006945 171 SKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAP 226 (624)
Q Consensus 171 sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pisLRVa~SiTPPvqAP 226 (624)
.++||.+.|++++|+.. + ..+.||+|+++........=+|+|.+.+++|-.||
T Consensus 74 ~~~lG~~~i~l~~l~~~-~--~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~~~ 126 (126)
T cd08678 74 SKFLGLAIVPFDELRKN-P--SGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAELP 126 (126)
T ss_pred CceEEEEEEeHHHhccC-C--ceeEEEEecCCCCCCCCcceEEEEEEEEeccccCC
Confidence 89999999999999965 2 24789999987543333455999999999998765
No 2
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=98.24 E-value=2e-05 Score=70.14 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=84.9
Q ss_pred EEEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCccccC
Q 006945 91 EVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 91 EV~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~ 168 (624)
||.|.|++.+||+.... ...+-||++...+ ....+. +-+.-..+|.|.+...|+.. +...|.|||.-+.. +
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~kT-~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~-----~ 73 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKS-KTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDR-----G 73 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEEEe-eeccCCCCCccceeEEEEecCCCCeEEEEEEeCCC-----C
Confidence 47789999999986533 3467888887542 111222 22233467899988888776 57788888887765 4
Q ss_pred CCcccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCeeEEEEEeeec
Q 006945 169 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 221 (624)
Q Consensus 169 r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pisLRVa~SiTP 221 (624)
.+...||.+.|++++|... -..+.|++|.+.++ ....=.|+|.+++||
T Consensus 74 ~~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~--~~~~G~l~l~~~~~~ 121 (121)
T cd04042 74 LTDDFMGSAFVDLSTLELN---KPTEVKLKLEDPNS--DEDLGYISLVVTLTP 121 (121)
T ss_pred CCCcceEEEEEEHHHcCCC---CCeEEEEECCCCCC--ccCceEEEEEEEECC
Confidence 5678999999999999943 44889999987654 233458999999987
No 3
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=98.02 E-value=9.4e-05 Score=70.36 Aligned_cols=128 Identities=16% Similarity=0.225 Sum_probs=89.9
Q ss_pred ceEEEEEEEEEeecCcCCCcCCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCcc
Q 006945 87 LKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKI 165 (624)
Q Consensus 87 r~vvEV~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L 165 (624)
|..--+.|.|+++|+||.. .+.|+.+..-+. ++..+ +.+.-..++-|..-.+|+|- +...|.|.|..++...
T Consensus 8 R~~~sL~v~V~EAk~Lp~~----~~~Y~~i~Ld~~-~vaRT-~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~- 80 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPK----KRYYCELCLDKT-LYART-TSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK- 80 (146)
T ss_pred EEEEEEEEEEEEccCCCCc----CCceEEEEECCE-EEEEE-EEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc-
Confidence 5555678999999999974 368888766632 11121 22233357789888888887 5788999996554422
Q ss_pred ccCCCcccccceeeecccccCCCCcceEeEEEEeecCCCCC-------CCCCeeEEEEEeeecCCc
Q 006945 166 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNV-------SSKPISLRIAVSFTIPTL 224 (624)
Q Consensus 166 ~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~-------ss~pisLRVa~SiTPPvq 224 (624)
.++.+..+||.+.|++++++ +...+|+||+|.+.++.. .....+|||-+-+++=.+
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~---~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~ 143 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVS---SRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRV 143 (146)
T ss_pred ccccCCcEEEEEEEEHHHhc---CCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeee
Confidence 12347789999999999999 356699999999876543 233479999998886433
No 4
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=98.00 E-value=0.00011 Score=66.67 Aligned_cols=120 Identities=13% Similarity=0.193 Sum_probs=82.2
Q ss_pred EEEEEEEEEeecCcCCCcCCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeecc--CcEEEEEEeeCCCccc
Q 006945 89 IVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEAT--GELLFELVSHSTSKIP 166 (624)
Q Consensus 89 vvEV~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~T--geLvlELr~~~~~~L~ 166 (624)
+-.+.|.|+..+|||.... .+-||.+.-..- ...+++ +.-..++.|.....|...+. ..|.|+|..+..
T Consensus 3 ~~~L~V~Vi~A~~L~~~~~--~DPYv~v~l~~~-~~~kT~--v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~---- 73 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKHV--PHPYCVISLNEV-KVARTK--VREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK---- 73 (126)
T ss_pred eeEEEEEEEEeeCCCCCCC--CCeeEEEEECCE-eEEEee--cCCCCCCccCCEEEEecCCCCcCEEEEEEEECCC----
Confidence 3457899999999997543 788887766421 112222 22236789998777765432 456666655544
Q ss_pred cCCCcccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCeeEEEEEeeec
Q 006945 167 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 221 (624)
Q Consensus 167 ~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pisLRVa~SiTP 221 (624)
+.+...||.++|++.++... -..+.|++|.+.+.....+.=.||+.+++++
T Consensus 74 -~~~d~~iG~v~i~l~~l~~~---~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 74 -RSKDSEIAEVTVQLSKLQNG---QETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred -CCCCCeEEEEEEEHhHccCC---CcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 45778999999999999853 3469999999875423334458999999875
No 5
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=97.84 E-value=0.00025 Score=67.37 Aligned_cols=100 Identities=14% Similarity=0.314 Sum_probs=69.8
Q ss_pred CceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCccccCCCcccccceeeecccccCCC
Q 006945 110 GDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPI 188 (624)
Q Consensus 110 ~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~r~sKllG~~sisw~dLL~~~ 188 (624)
.+-||.++..+ ....++ +-+.-..++.|.+..+|+|. +...|.|+|..++. ++ ..+||+++|++++++..
T Consensus 58 sDPYv~V~l~~-~~~~rT-~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~-----~~-~~~IG~~~i~l~~l~~g- 128 (158)
T cd04015 58 SDPYATVDLAG-ARVART-RVIENSENPVWNESFHIYCAHYASHVEFTVKDNDV-----VG-AQLIGRAYIPVEDLLSG- 128 (158)
T ss_pred cCeEEEEEECC-eEeeEE-EEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCC-----cC-CcEEEEEEEEhHHccCC-
Confidence 46777766431 121111 22233468899999999997 55678888876654 22 47999999999999853
Q ss_pred CcceEeEEEEeecCCCCCCCCCeeEEEEEeee
Q 006945 189 SKLAVEQWFDLVPRSGNVSSKPISLRIAVSFT 220 (624)
Q Consensus 189 s~LS~Ekw~eL~~~~g~~ss~pisLRVa~SiT 220 (624)
-..+.|++|.+..+..-..+..|||.+.||
T Consensus 129 --~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 129 --EPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred --CCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 357999999887554445567999999886
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=97.72 E-value=0.00032 Score=63.08 Aligned_cols=104 Identities=18% Similarity=0.316 Sum_probs=72.4
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeec-------cCcEEEEEEeeCCC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA-------TGELLFELVSHSTS 163 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~-------TgeLvlELr~~~~~ 163 (624)
|.|.|+.++||+.... ...+-||.++.. ... .+ .+-+.-..+|.|.+...|.... ...|.|+|..+..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-~~~-~k-T~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-KEK-YS-TSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC-Cee-ee-eeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-
Confidence 5688999999986533 456889988754 222 22 2333334788999977776632 4567777776653
Q ss_pred ccccCCCcccccceeeecccccCCCCcceEeEEEEeecCCC
Q 006945 164 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 204 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g 204 (624)
+.+..+||.+.|++.+|..+ +......|++|.++.+
T Consensus 77 ----~~~d~~iG~~~i~l~~l~~~-~~~~~~~W~~L~~~~~ 112 (126)
T cd08682 77 ----LGLDKFLGQVSIPLNDLDED-KGRRRTRWFKLESKPG 112 (126)
T ss_pred ----cCCCceeEEEEEEHHHhhcc-CCCcccEEEECcCCCC
Confidence 45678999999999999854 3445789999987644
No 7
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=97.72 E-value=0.00046 Score=65.20 Aligned_cols=121 Identities=12% Similarity=0.218 Sum_probs=82.7
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEe--eecCCceeEEEEEee-c-cCcEEEEEEeeCCCccc
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIP 166 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i--~Se~~wkq~~~fqCE-~-TgeLvlELr~~~~~~L~ 166 (624)
+.|.|+..+||+.... ...+-||.++... ...+. +... ..++.|.+...|... + ...|.|+|..+..
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~kT--k~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~---- 73 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVLRT--RPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG---- 73 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEeee--EeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC----
Confidence 4688899999987643 3577888887652 22222 2222 357899998888874 3 5678889987665
Q ss_pred cCCCcccccceeeecccccCC-CCcceEeEEEEeecCCCC----CC-CCCeeEEEEEeeec
Q 006945 167 MTGASKTMGTASLSLQNFISP-ISKLAVEQWFDLVPRSGN----VS-SKPISLRIAVSFTI 221 (624)
Q Consensus 167 ~~r~sKllG~~sisw~dLL~~-~s~LS~Ekw~eL~~~~g~----~s-s~pisLRVa~SiTP 221 (624)
+....+||.+.|++++|... .+.--.++||+|...++. .. ...-+|+|-++|++
T Consensus 74 -~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 74 -PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred -CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 34568999999999999753 123447999999987541 11 22257788888873
No 8
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=97.70 E-value=1.6e-05 Score=79.11 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=57.9
Q ss_pred cCCcceeec-cCcceeeecccccc---ccccccccccccccceeeeeeCCCCCcccee--EEEeccCccee
Q 006945 325 KEGHLFELL-GNRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKAI--ALLDLKSGVIK 389 (624)
Q Consensus 325 ~dg~lfElS-~~kPl~fisGr~m~---fE~~~ls~~~sgd~FVT~V~~spE~pYGea~--aLLdLk~~~fe 389 (624)
.++++||.+ ...|+.|+.|..++ ||.+ +.+++.++.| .|+++|++|||+|+ +|+.++++.|.
T Consensus 18 ~dG~v~dst~~~~Pl~~~~G~g~lipglE~a-L~G~~~Gd~~--~v~l~peeAyGe~d~~lV~~vpr~~F~ 85 (196)
T PRK10737 18 EDGVLVDESPVSAPLDYLHGHGSLISGLETA-LEGHEVGDKF--DVAVGANDAYGQYDENLVQRVPKDVFM 85 (196)
T ss_pred CCCCEEEecCCCCCeEEEeCCCcchHHHHHH-HcCCCCCCEE--EEEEChHHhcCCCChHHEEEecHHHCC
Confidence 368899999 89999999999988 8888 9999999999 99999999999999 99999999995
No 9
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=97.69 E-value=0.00051 Score=63.04 Aligned_cols=113 Identities=8% Similarity=0.194 Sum_probs=77.8
Q ss_pred EEEEEEeecCcCCCcCCCCceEEEEEccCCceeeccCcceEe--eecCCceeEEEEEee-ccCcEEEEEEeeCCCccccC
Q 006945 92 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 92 V~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~~l~i--~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~ 168 (624)
+.|.|+..|+++...-...+-||+++.-+ ..++ .++.. ..+|.|.+..+|.++ +...|.|||..++. +
T Consensus 4 L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~--~~~k--T~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~-----~ 74 (121)
T cd04016 4 LSITVVQAKLVKNYGLTRMDPYCRIRVGH--AVYE--TPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERA-----F 74 (121)
T ss_pred EEEEEEEccCCCcCCCCCCCceEEEEECC--EEEE--eEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCC-----C
Confidence 45777888876643223478899887753 2222 22222 468999999999997 45679999988886 5
Q ss_pred CCcccccceeeeccc-ccCCCCcceEeEEEEeecCCCCCCCCCeeEEEEEe
Q 006945 169 GASKTMGTASLSLQN-FISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVS 218 (624)
Q Consensus 169 r~sKllG~~sisw~d-LL~~~s~LS~Ekw~eL~~~~g~~ss~pisLRVa~S 218 (624)
.+-.+||.++|++.+ ++ +... .+.||+|.++++. .+.=++|+.+|
T Consensus 75 ~~dd~iG~~~i~l~~~~~-~g~~--~~~W~~L~~~~~~--~~~g~i~l~l~ 120 (121)
T cd04016 75 TMDERIAWTHITIPESVF-NGET--LDDWYSLSGKQGE--DKEGMINLVFS 120 (121)
T ss_pred cCCceEEEEEEECchhcc-CCCC--ccccEeCcCccCC--CCceEEEEEEe
Confidence 567899999999975 55 3222 6999999986543 34456666655
No 10
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=97.67 E-value=0.00074 Score=60.18 Aligned_cols=104 Identities=19% Similarity=0.171 Sum_probs=70.3
Q ss_pred EEEEEeecCcCCCcC-CCCceEEEEEccCC-ceeeccCcceEeeecCCceeEEEEEeec--cCcEEEEEEeeCCCccccC
Q 006945 93 FVEIVAVKNLPEDHK-DKGDLFVFFSKSQP-DIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 93 ~leIv~~knlp~~~k-~~~~lFVrl~k~q~-d~~~k~~~~l~i~Se~~wkq~~~fqCE~--TgeLvlELr~~~~~~L~~~ 168 (624)
.|.|+..+||+.... ...+.||.+...+. ....++ +-+.-..+|.|.+...|+... ..-|.|+|+.+.. +
T Consensus 4 ~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT-~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~-----~ 77 (126)
T cd04043 4 TIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKT-RTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF-----V 77 (126)
T ss_pred EEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecc-cEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC-----C
Confidence 466889999986532 34678998864322 111222 223334688999888888763 5678888876654 3
Q ss_pred CCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 169 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 169 r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
.+..+||.+.|++.++......-..+.||+|.++
T Consensus 78 ~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~ 111 (126)
T cd04043 78 GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQ 111 (126)
T ss_pred CCCceEEEEEEecCHHHcCCCCCCceEEEEcCCC
Confidence 4677899999999987654224557899999874
No 11
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.63 E-value=0.00047 Score=60.22 Aligned_cols=99 Identities=20% Similarity=0.280 Sum_probs=73.7
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeec--cCcEEEEEEeeCCCccccC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~--TgeLvlELr~~~~~~L~~~ 168 (624)
+.|.|++.+|||.... ...+-||.++... ...+. +...-..++.|.+...|++.. ...|.|+|+.+..
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT-~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~------ 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQKS-KVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT------ 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEeC-ccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC------
Confidence 5688999999996532 4467888887653 22232 233345788999999999983 5668888877654
Q ss_pred CCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 169 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 169 r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
.++||.+.|+|.+|+.. +...+..||+|..+
T Consensus 73 --~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 --GKSLGSLTLPLSELLKE-PDLTLDQPFPLDNS 103 (105)
T ss_pred --CCccEEEEEEHHHhhcc-ccceeeeeEecCCC
Confidence 57899999999999976 45669999999764
No 12
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=97.59 E-value=0.00065 Score=59.90 Aligned_cols=99 Identities=16% Similarity=0.301 Sum_probs=69.8
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcce-E-eeecCCceeEEEEEeec--cCcEEEEEEeeCCCccc
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKL-T-ILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIP 166 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l-~-i~Se~~wkq~~~fqCE~--TgeLvlELr~~~~~~L~ 166 (624)
+.|.|+..+|||.... ...+-||.++... . +.+.+. . ...+|.|++...|+... ...|.|||.-+..
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~--~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~---- 74 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGG--V--TKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK---- 74 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECC--C--ccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC----
Confidence 6788999999986532 3467888887653 1 112222 1 23479999988888763 5568888876654
Q ss_pred cCCCcccccceeeecccccCCCCcceEeEEEEeecCC
Q 006945 167 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 203 (624)
Q Consensus 167 ~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~ 203 (624)
.+ ..+||.+.|++.+|+... ..+.|++|..+.
T Consensus 75 -~~-~~~iG~~~~~l~~~~~~~---~~~~w~~L~~~~ 106 (118)
T cd08681 75 -RK-PDLIGDTEVDLSPALKEG---EFDDWYELTLKG 106 (118)
T ss_pred -CC-CcceEEEEEecHHHhhcC---CCCCcEEeccCC
Confidence 23 789999999999998652 368999998753
No 13
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.56 E-value=0.0013 Score=59.09 Aligned_cols=115 Identities=21% Similarity=0.254 Sum_probs=79.6
Q ss_pred EEeecCcCCCcCCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee----ccCcEEEEEEeeCCCccccCCCc
Q 006945 96 IVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE----ATGELLFELVSHSTSKIPMTGAS 171 (624)
Q Consensus 96 Iv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE----~TgeLvlELr~~~~~~L~~~r~s 171 (624)
|+.++||+. .....+-||+++... .-. -.+.+....++.|.+...|... ....|.|+|..+.. +.+.
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~--~~~-kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-----~~~d 72 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRG--VKK-KTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-----VGRN 72 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECC--Eee-ecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-----CCCC
Confidence 567888887 333467788876531 111 1233334468899998888885 35667777777755 3466
Q ss_pred ccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCeeEEEEEeeecCCc
Q 006945 172 KTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTL 224 (624)
Q Consensus 172 KllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pisLRVa~SiTPPvq 224 (624)
.+||.+.|++++|+.. -....|++|.+.++ ....-+|++.+++.||--
T Consensus 73 ~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~--~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 73 RLIGSATVSLQDLVSE---GLLEVTEPLLDSNG--RPTGATISLEVSYQPPDG 120 (127)
T ss_pred ceEEEEEEEhhHcccC---CceEEEEeCcCCCC--CcccEEEEEEEEEeCCCC
Confidence 7999999999999954 44788999986543 223469999999999854
No 14
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.49 E-value=0.0018 Score=58.25 Aligned_cols=122 Identities=19% Similarity=0.222 Sum_probs=82.4
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCc--e-eec-cCcceEeeecCCceeEEEEEeec-cCcEEEEEEeeCCCcc
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPD--I-FFN-AKQKLTILSKSGMKQVASFQCEA-TGELLFELVSHSTSKI 165 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d--~-~~k-~~~~l~i~Se~~wkq~~~fqCE~-TgeLvlELr~~~~~~L 165 (624)
+.|.|+..+||+.... ...+-||++...... . ... -.+-+.-..++.|++...|+..+ ...|.|+|+.+..
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~--- 78 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR--- 78 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC---
Confidence 4577889999986532 346789888765331 1 111 11223334678999988888764 6678888886654
Q ss_pred ccCCCcccccceeeecccccCCCCc---ceEeEEEEeecCCCCCCCCCeeEEEEEee
Q 006945 166 PMTGASKTMGTASLSLQNFISPISK---LAVEQWFDLVPRSGNVSSKPISLRIAVSF 219 (624)
Q Consensus 166 ~~~r~sKllG~~sisw~dLL~~~s~---LS~Ekw~eL~~~~g~~ss~pisLRVa~Si 219 (624)
+.+..+||.+.|++.+|....+. -..++|+.|.+... .+...=+||+.++|
T Consensus 79 --~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 --LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSS-KSRVKGHLRLYMAY 132 (133)
T ss_pred --CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCC-CCcceeEEEEEEee
Confidence 45678999999999999976432 24889999997532 23334488888775
No 15
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=97.47 E-value=0.0027 Score=55.82 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=70.0
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-c-cCcEEEEEEeeCCCccccC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~-TgeLvlELr~~~~~~L~~~ 168 (624)
|.|.|+..+|||.... ...+-||.++..+ ...+. +-..-..+|.|.+...|+-. + ..-|.|+|..+.. +
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT-~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~-----~ 73 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGN--EKYKS-KVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT-----G 73 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECC--EeEec-ccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC-----C
Confidence 4577889999986632 3467788887642 22222 23334578899987666654 3 5667777765554 4
Q ss_pred CCcccccceeeecccccCCCCcceEeEEEEeecCC
Q 006945 169 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 203 (624)
Q Consensus 169 r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~ 203 (624)
.+..+||.+.|++.+|... -..+.|++|.+..
T Consensus 74 ~~~~~iG~~~~~l~~l~~~---~~~~~w~~L~~~~ 105 (116)
T cd08376 74 KKDEFIGRCEIDLSALPRE---QTHSLELELEDGE 105 (116)
T ss_pred CCCCeEEEEEEeHHHCCCC---CceEEEEEccCCC
Confidence 5678999999999999854 3579999999863
No 16
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=97.42 E-value=0.0024 Score=57.54 Aligned_cols=106 Identities=8% Similarity=0.061 Sum_probs=74.4
Q ss_pred EEEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeeccCcEEEEEEeeCCCccccCC
Q 006945 91 EVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSHSTSKIPMTG 169 (624)
Q Consensus 91 EV~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~TgeLvlELr~~~~~~L~~~r 169 (624)
||.|.|+..+||+.... ...+-||++.... ....+. +...-..++.|+....|+..+...|.|||..+... .+
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~kT-~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~----~~ 74 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDG-GQTHST-DVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKF----KK 74 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECC-ccceEc-cEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCC----CC
Confidence 57899999999986532 3467788887631 212222 22333468899998999988888899999877662 22
Q ss_pred -CcccccceeeecccccCCCCcceEeEEEEeecCCC
Q 006945 170 -ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 204 (624)
Q Consensus 170 -~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g 204 (624)
...+||.+.|+++||+.... +...|++|.+...
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~--~~~~~~~l~~~~~ 108 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKD--TGYQRLDLRKLKK 108 (123)
T ss_pred CCCceEeEEEEEHHHccccCC--CccceeEeecCCC
Confidence 25799999999999996532 3566999976643
No 17
>TIGR03601 B_an_ocin probable heterocycle-containing bacteriocin, BA_2677 family. Numerous bacteria encode systems for producing bacteriocins by extensive modification of ribosomally produced precursors. These proteins are recognizable in part by proximity to the modification proteins, and in part by small size, with leader peptide-like N-terminal sequence followed by low-complexity sequence rich in Cys, Gly, and/or Ser. This protein family represents a probable member of the class, though previously unrecognized because it is not encoded adjacent to its modification proteins.
Probab=97.40 E-value=0.00011 Score=62.68 Aligned_cols=7 Identities=100% Similarity=2.660 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 006945 489 CGGCGGG 495 (624)
Q Consensus 489 cgg~ggc 495 (624)
|||||||
T Consensus 42 cggCGgc 48 (79)
T TIGR03601 42 CGGCGGG 48 (79)
T ss_pred ccCCCCC
Confidence 4444333
No 18
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=97.39 E-value=0.001 Score=58.77 Aligned_cols=101 Identities=19% Similarity=0.297 Sum_probs=72.3
Q ss_pred EEEEEeecCcCCCcC--CCCceEEEEEccCCceeeccCcceEeeecCCc-eeEEEEEeec----cCcEEEEEEeeCCCcc
Q 006945 93 FVEIVAVKNLPEDHK--DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGM-KQVASFQCEA----TGELLFELVSHSTSKI 165 (624)
Q Consensus 93 ~leIv~~knlp~~~k--~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~w-kq~~~fqCE~----TgeLvlELr~~~~~~L 165 (624)
.|.|++.+|||...+ ...+-||.++... ...+. +-.....+|.| .+...|.... +..|.|+|+.+..
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~~kT-~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~--- 75 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TTYKT-DVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT--- 75 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECC--eeEec-ceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC---
Confidence 578899999986532 3467899887753 22221 22233467899 7877776652 3568888887764
Q ss_pred ccCCCcccccceeeecccccCCCCcceEeEEEEeec
Q 006945 166 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 201 (624)
Q Consensus 166 ~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~ 201 (624)
+++..+||.+.|++++|+.+.+....++||+|..
T Consensus 76 --~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 76 --YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred --CCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 4566899999999999998756777999999864
No 19
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=97.34 E-value=0.0037 Score=56.29 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=77.6
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-cc----CcEEEEEEeeCCCcc
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-AT----GELLFELVSHSTSKI 165 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~T----geLvlELr~~~~~~L 165 (624)
+.|.|+..+||+.... ...+-||.+.... .. .+ .+-+.-..+|.|.+...|++. +. ..|.|+|.-+.. .
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~-~r-T~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-~- 76 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QK-KR-TRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-S- 76 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EE-ec-ceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-C-
Confidence 5688999999986533 4467888876442 21 11 122333467899998888886 32 346666665433 1
Q ss_pred ccCCCcccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCeeEEEEEeee
Q 006945 166 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFT 220 (624)
Q Consensus 166 ~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pisLRVa~SiT 220 (624)
.+...+||.+.|++++|..+ . -....||+|..++ ..+..-=+|+|.+.+|
T Consensus 77 --~~~d~~lG~v~i~l~~l~~~-~-~~~~~w~~L~~~~-~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 77 --GRRRSFLGRVRISGTSFVPP-S-EAVVQRYPLEKRG-LFSRVRGEIGLKVYIT 126 (127)
T ss_pred --cCCCCeeeEEEEcHHHcCCC-C-CccceEeEeeeCC-CCCCccEEEEEEEEEc
Confidence 23678999999999999944 2 2368999999752 1222223788888877
No 20
>TIGR03601 B_an_ocin probable heterocycle-containing bacteriocin, BA_2677 family. Numerous bacteria encode systems for producing bacteriocins by extensive modification of ribosomally produced precursors. These proteins are recognizable in part by proximity to the modification proteins, and in part by small size, with leader peptide-like N-terminal sequence followed by low-complexity sequence rich in Cys, Gly, and/or Ser. This protein family represents a probable member of the class, though previously unrecognized because it is not encoded adjacent to its modification proteins.
Probab=97.33 E-value=0.00015 Score=61.80 Aligned_cols=8 Identities=63% Similarity=1.328 Sum_probs=3.9
Q ss_pred CCCCCCCC
Q 006945 489 CGGCGGGG 496 (624)
Q Consensus 489 cgg~ggc~ 496 (624)
|||||||+
T Consensus 45 CGgcggcg 52 (79)
T TIGR03601 45 CGGGGCCG 52 (79)
T ss_pred CCCCCCCC
Confidence 44455554
No 21
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00015 Score=71.32 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=57.7
Q ss_pred CCcceeec-c-Ccceeeecccccc---ccccccccccccccceeeeeeCCCCCcccee--EEEeccCcceeec
Q 006945 326 EGHLFELL-G-NRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKAI--ALLDLKSGVIKVK 391 (624)
Q Consensus 326 dg~lfElS-~-~kPl~fisGr~m~---fE~~~ls~~~sgd~FVT~V~~spE~pYGea~--aLLdLk~~~feVd 391 (624)
++.+|+.| . .+|+.|+.|.+++ +|.. +.+++.++.| .|+++||+|||+|+ .+..+++..|.-.
T Consensus 19 dg~v~Dtt~e~~~P~~~i~G~g~li~glE~a-l~g~~~Ge~~--~V~IpPE~AfGe~~~~lvq~vp~~~F~~~ 88 (174)
T COG1047 19 DGEVVDTTDENYGPLTFIVGAGQLIPGLEEA-LLGKEVGEEF--TVEIPPEDAFGEYDPDLVQRVPRDEFQGV 88 (174)
T ss_pred CCcEEEcccccCCCeEEEecCCCcchhHHHH-HhCCCCCcee--EEEeCchHhcCCCChHHeEEecHHHhCcC
Confidence 48999999 6 8899999999999 7787 9999999999 99999999999999 8999999998664
No 22
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=97.32 E-value=0.0022 Score=58.09 Aligned_cols=101 Identities=17% Similarity=0.312 Sum_probs=71.6
Q ss_pred EEEEEEeecCcCCCcCCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeec--cCcEEEEEEeeCCCccccCC
Q 006945 92 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMTG 169 (624)
Q Consensus 92 V~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~--TgeLvlELr~~~~~~L~~~r 169 (624)
+.|.|++.+||+.. + .+-||.++..+ . ..-.+.+.-..+|.|.+...|+.+. ...|.|+|..+.. +
T Consensus 2 L~V~Vi~a~~L~~~-~--~Dpyv~v~l~~--~-~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~-----~- 69 (121)
T cd08378 2 LYVRVVKARGLPAN-S--NDPVVEVKLGN--Y-KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK-----A- 69 (121)
T ss_pred EEEEEEEecCCCcc-c--CCCEEEEEECC--c-cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-----C-
Confidence 45788999999988 5 78899888653 1 1122223344688999988888763 5567777776653 2
Q ss_pred CcccccceeeecccccCCC--CcceEeEEEEeecCCC
Q 006945 170 ASKTMGTASLSLQNFISPI--SKLAVEQWFDLVPRSG 204 (624)
Q Consensus 170 ~sKllG~~sisw~dLL~~~--s~LS~Ekw~eL~~~~g 204 (624)
...+||.+.|+++++.... ..-...+|++|.+..+
T Consensus 70 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~ 106 (121)
T cd08378 70 KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG 106 (121)
T ss_pred cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC
Confidence 5678999999999997532 2333679999998754
No 23
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=97.28 E-value=0.0044 Score=57.43 Aligned_cols=118 Identities=12% Similarity=0.109 Sum_probs=78.9
Q ss_pred EEEEEEeecC---cCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCcc-
Q 006945 92 VFVEIVAVKN---LPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKI- 165 (624)
Q Consensus 92 V~leIv~~kn---lp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L- 165 (624)
+.|.|+..+| |+.... ...+-||.++-- ... .+ .+-+.-..+|.|.+...|++. +...|.|++..+....-
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g-~~~-~r-Tk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG-PKW-VR-TRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWK 78 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEEC-CEE-eE-cCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccc
Confidence 4577888898 554322 346789888642 222 22 233444578999999999996 56678888887765210
Q ss_pred ccCCCcccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCeeEEE
Q 006945 166 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRI 215 (624)
Q Consensus 166 ~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pisLRV 215 (624)
..+++..+||.+.|++++|... -..+.||+|...+.....+.-+||.
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDD---RVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCC---CEEeeEEEeEeCCCCCccCCcEEEe
Confidence 0124789999999999999844 3578999999765333344446664
No 24
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=97.26 E-value=0.0022 Score=57.18 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=70.4
Q ss_pred EEEEEEeecCcCCCc-CCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeec----cCcEEEEEEeeCCCccc
Q 006945 92 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA----TGELLFELVSHSTSKIP 166 (624)
Q Consensus 92 V~leIv~~knlp~~~-k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~----TgeLvlELr~~~~~~L~ 166 (624)
+.|.|+..+||+... ....+-||.+.....+....-.+-+.-..+|.|.....|+... ...|.|+|.-+..
T Consensus 18 L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~---- 93 (124)
T cd08385 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR---- 93 (124)
T ss_pred EEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC----
Confidence 678899999998653 2346889988765222111111223344688999999999862 4578888887664
Q ss_pred cCCCcccccceeeecccccCCCCcceEeEEEEee
Q 006945 167 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 200 (624)
Q Consensus 167 ~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~ 200 (624)
+....+||.+.|++.++... --.+.|++|.
T Consensus 94 -~~~~~~lG~~~i~l~~~~~~---~~~~~W~~l~ 123 (124)
T cd08385 94 -FSKHDLIGEVRVPLLTVDLG---HVTEEWRDLE 123 (124)
T ss_pred -CCCCceeEEEEEecCcccCC---CCcceEEEcc
Confidence 45678999999999998643 2378999974
No 25
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=97.26 E-value=0.0035 Score=56.82 Aligned_cols=103 Identities=12% Similarity=0.188 Sum_probs=69.6
Q ss_pred EEEEEEeecCcCCCcC-----------CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeeccCcEEEEEEee
Q 006945 92 VFVEIVAVKNLPEDHK-----------DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSH 160 (624)
Q Consensus 92 V~leIv~~knlp~~~k-----------~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~TgeLvlELr~~ 160 (624)
+.|.|+..+||+.... ...+-||.++... ....+. +-..-..+|.|.+...|+......|.|++..+
T Consensus 6 l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-~~~~kT-~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d~ 83 (132)
T cd04014 6 LKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-THIGKT-STKPKTNSPVWNEEFTTEVHNGRNLELTVFHD 83 (132)
T ss_pred EEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-EEEeEE-eEcCCCCCCCcceeEEEEcCCCCEEEEEEEeC
Confidence 5677888899875421 1357788776542 122221 11222467899998888887667788887644
Q ss_pred CCCccccCCCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 161 STSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 161 ~~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
.. +.+..+||.+.|++++|... ..-..+.|++|.|.
T Consensus 84 ~~-----~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~~~ 119 (132)
T cd04014 84 AA-----IGPDDFVANCTISFEDLIQR-GSGSFDLWVDLEPQ 119 (132)
T ss_pred CC-----CCCCceEEEEEEEhHHhccc-CCCcccEEEEccCC
Confidence 43 34667999999999999963 23347999999864
No 26
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=97.25 E-value=0.0055 Score=54.47 Aligned_cols=102 Identities=12% Similarity=0.144 Sum_probs=69.6
Q ss_pred EEEEEEeecCcCCCc-CCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeec--cCcEEEEEEeeCCCccccC
Q 006945 92 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 92 V~leIv~~knlp~~~-k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~--TgeLvlELr~~~~~~L~~~ 168 (624)
+.|.|+..+||+... ....+-||+++.........-.+.+....+|.|.+...|...+ ..-|.|+|+-+.. +
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~-----~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDY-----V 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCC-----C
Confidence 457788999998652 2346789988764322111222333444688999888887763 3336666666544 4
Q ss_pred CCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 169 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 169 r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
...+||++.|++.+|... -..+.||+|.++
T Consensus 77 -~~~~iG~~~~~l~~l~~g---~~~~~~~~L~~~ 106 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLG---EKVRVTFSLNPQ 106 (119)
T ss_pred -CCcccEEEEEEHHHCCCC---CcEEEEEECCCC
Confidence 567999999999999843 468999999886
No 27
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=97.25 E-value=0.0049 Score=54.72 Aligned_cols=105 Identities=16% Similarity=0.213 Sum_probs=70.5
Q ss_pred EEEEEEeecCcCCC-c--CCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee--ccCcEEEEEEeeCCCccc
Q 006945 92 VFVEIVAVKNLPED-H--KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE--ATGELLFELVSHSTSKIP 166 (624)
Q Consensus 92 V~leIv~~knlp~~-~--k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE--~TgeLvlELr~~~~~~L~ 166 (624)
+.|.|+..+||+.. . ....+-||.+...+ ...+. +.+.-..+|.|.+...|+.. ....|.|++.-++.
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~--~~~kT-~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~---- 75 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA--QRFKT-QTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR---- 75 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEECC--EEEec-ceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC----
Confidence 45778889999854 2 23356788776431 11122 22334578899887777776 36778888776664
Q ss_pred cCCCcccccceeeecccccCCCCcceEeEEEEeecCCC
Q 006945 167 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 204 (624)
Q Consensus 167 ~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g 204 (624)
+....+||.+.|++.+++.....-..+.|++|.+++.
T Consensus 76 -~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~ 112 (128)
T cd04024 76 -FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP 112 (128)
T ss_pred -CCCCCcceEEEEEHHHhhcccccCccceeEEccCccc
Confidence 3466899999999999985322233689999998743
No 28
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.24 E-value=0.0037 Score=55.06 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=76.3
Q ss_pred EEEEEEeecCcCCCc-C-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCccccC
Q 006945 92 VFVEIVAVKNLPEDH-K-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 92 V~leIv~~knlp~~~-k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~ 168 (624)
|.|.|+..+|||... . ...+-||+++.... ....-.+-+.-..++.|.+...|... ....|.||+..+.. +
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~-----~ 77 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFND-----K 77 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCC-----C
Confidence 567899999999532 2 23578998877642 11111122333468899998888776 47788888887765 4
Q ss_pred CCcccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCeeEEEEEeeec
Q 006945 169 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 221 (624)
Q Consensus 169 r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pisLRVa~SiTP 221 (624)
+...+||.+.|+|.+|......- +.|..|.++. .+.=+|+|.+.+-|
T Consensus 78 ~~d~~iG~~~~~l~~l~~~~~~~--~~~~~~~~~~----k~~G~i~~~l~~~p 124 (124)
T cd04044 78 RKDKLIGTAEFDLSSLLQNPEQE--NLTKNLLRNG----KPVGELNYDLRFFP 124 (124)
T ss_pred CCCceeEEEEEEHHHhccCcccc--CcchhhhcCC----ccceEEEEEEEeCC
Confidence 57799999999999999763321 1233343321 12247888887765
No 29
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=97.17 E-value=0.0041 Score=55.57 Aligned_cols=100 Identities=13% Similarity=0.173 Sum_probs=69.6
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCc-eeeccCcceEeeecCCceeEEEEEee----ccCcEEEEEEeeCCCcc
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPD-IFFNAKQKLTILSKSGMKQVASFQCE----ATGELLFELVSHSTSKI 165 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d-~~~k~~~~l~i~Se~~wkq~~~fqCE----~TgeLvlELr~~~~~~L 165 (624)
+.|.|+..+||+.... ...+-||++... |+ ....-.+-+.-..++.|.....|+.. ....|.|+|..++.
T Consensus 18 L~V~v~~a~~L~~~d~~g~~dpyv~v~l~-~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~--- 93 (124)
T cd08387 18 LNVKLIQARNLQPRDFSGTADPYCKVRLL-PDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ--- 93 (124)
T ss_pred EEEEEEEeeCCCCCCCCCCCCCeEEEEEe-cCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC---
Confidence 6688899999986532 346789988874 32 21111223334577899998777764 24568888877654
Q ss_pred ccCCCcccccceeeecccccCCCCcceEeEEEEee
Q 006945 166 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 200 (624)
Q Consensus 166 ~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~ 200 (624)
+++..+||.+.|++.|+... . .+..|++|+
T Consensus 94 --~~~~~~iG~~~i~l~~~~~~-~--~~~~W~~l~ 123 (124)
T cd08387 94 --FSRDECIGVVELPLAEVDLS-E--KLDLWRKIQ 123 (124)
T ss_pred --CCCCceeEEEEEecccccCC-C--CcceEEECc
Confidence 45678999999999999855 3 568899975
No 30
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=97.16 E-value=0.0048 Score=56.40 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=71.7
Q ss_pred EEEEEEEeecCcCCCcC--CCCceEEEEEccCCce-eeccCcceEeeecCCceeEEEEE-ee----ccCcEEEEEEeeCC
Q 006945 91 EVFVEIVAVKNLPEDHK--DKGDLFVFFSKSQPDI-FFNAKQKLTILSKSGMKQVASFQ-CE----ATGELLFELVSHST 162 (624)
Q Consensus 91 EV~leIv~~knlp~~~k--~~~~lFVrl~k~q~d~-~~k~~~~l~i~Se~~wkq~~~fq-CE----~TgeLvlELr~~~~ 162 (624)
.+.|.|+..+|||.... ...+-||++.....+. ..+ .+-+.-..++.|.....|+ -+ ....|.|+|..++.
T Consensus 17 ~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~k-T~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~ 95 (128)
T cd08388 17 ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVK-TRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR 95 (128)
T ss_pred EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceee-ccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC
Confidence 36788999999997532 4468899887642111 112 2333345788999988884 33 12346666766654
Q ss_pred CccccCCCcccccceeeecccccCCCCcceEeEEEEeec
Q 006945 163 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 201 (624)
Q Consensus 163 ~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~ 201 (624)
++...+||.+.|++.+|--. +...++-|++|+|
T Consensus 96 -----~~~d~~lG~~~i~L~~l~~~-~~~~~~~~~~~~~ 128 (128)
T cd08388 96 -----YSRDDVIGEVVCPLAGADLL-NEGELLVSREIQP 128 (128)
T ss_pred -----CCCCceeEEEEEeccccCCC-CCceEEEEEeccC
Confidence 45678999999999999644 5678999999876
No 31
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.14 E-value=0.0027 Score=57.36 Aligned_cols=101 Identities=10% Similarity=0.118 Sum_probs=71.9
Q ss_pred EEEEEEeecCcCCCc-CCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCccccCC
Q 006945 92 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTG 169 (624)
Q Consensus 92 V~leIv~~knlp~~~-k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~r 169 (624)
|.|.|+..+||+... ....+-||+++..+ . ...-.+.+.-..++.|++...|+.. +...|.||+..+.. +.
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~-~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~-----~~ 75 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNG-I-VKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEK-----VG 75 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEECC-E-EeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCC-----CC
Confidence 557788888888653 23467788887531 1 1111222334578999998888886 56788888887765 34
Q ss_pred CcccccceeeecccccCCCCcceEeEEEEeecCC
Q 006945 170 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 203 (624)
Q Consensus 170 ~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~ 203 (624)
.-.+||.+.|++.+|+.. +.+.|+.|..++
T Consensus 76 ~d~~IG~~~~~l~~l~~~----~~~~~~~~~~~~ 105 (120)
T cd04045 76 KDRSLGSVEINVSDLIKK----NEDGKYVEYDDE 105 (120)
T ss_pred CCCeeeEEEEeHHHhhCC----CCCceEEecCCC
Confidence 567999999999999976 569999988764
No 32
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=97.12 E-value=0.0027 Score=59.61 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=72.4
Q ss_pred EEEEEEeecCcCCCcCCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCccccCCC
Q 006945 92 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGA 170 (624)
Q Consensus 92 V~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~r~ 170 (624)
++|-++.+++|+.... -+-||.++-.. ++ .+.+..--+++.|.+...|+-+ +..+|+|||+.+.. + .
T Consensus 4 L~V~Vv~Ar~L~~~~~--~dPYV~Ik~g~-~k---~kT~v~~~~nP~WnE~F~F~~~~~~~~L~v~V~dkd~-----~-~ 71 (127)
T cd08394 4 LCVLVKKAKLDGAPDK--FNTYVTLKVQN-VK---STTIAVRGSQPCWEQDFMFEINRLDLGLVIELWNKGL-----I-W 71 (127)
T ss_pred EEEEEEEeeCCCCCCC--CCCeEEEEECC-EE---eEeeECCCCCCceeeEEEEEEcCCCCEEEEEEEeCCC-----c-C
Confidence 6788999999976443 45688887632 21 1111111158999999999987 56669999998763 3 6
Q ss_pred cccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 171 SKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 171 sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
-.+||.++|+|++++...+.| ...|+.|.|.
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~-~~~Wy~L~~~ 102 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEG-PGEWLTLDSE 102 (127)
T ss_pred CCceEEEEEEhHHcccCCCCC-CCccEecChH
Confidence 779999999999999886655 5789999975
No 33
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=97.09 E-value=0.0051 Score=54.15 Aligned_cols=101 Identities=10% Similarity=0.065 Sum_probs=68.7
Q ss_pred EEEEEEEEeecCcCCCcCCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-c-----cCcEEEEEEeeCCC
Q 006945 90 VEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-----TGELLFELVSHSTS 163 (624)
Q Consensus 90 vEV~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~-----TgeLvlELr~~~~~ 163 (624)
-+|.|.|+..+||+ ... .+-||.++-.. ...+. +...-..++.|.+...|... + ..-|.|+|+.+..
T Consensus 4 ~~l~V~v~~a~~L~-~~~--~dpyv~v~~~~--~~~kT-~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~- 76 (111)
T cd04011 4 FQVRVRVIEARQLV-GGN--IDPVVKVEVGG--QKKYT-SVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS- 76 (111)
T ss_pred EEEEEEEEEcccCC-CCC--CCCEEEEEECC--Eeeee-eEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-
Confidence 36889999999999 323 67798887662 21121 22222357899987776653 2 2346666665544
Q ss_pred ccccCCCcccccceeeecccccCCCCcceEeEEEEeec
Q 006945 164 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 201 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~ 201 (624)
+....+||.++|+++++......--.++||+|+.
T Consensus 77 ----~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 77 ----LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ----cccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 3457999999999999987754445799999874
No 34
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=97.07 E-value=0.0053 Score=54.38 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=68.2
Q ss_pred EEEEEEeecCcCCCc--CCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee--c--cCcEEEEEEeeCCCcc
Q 006945 92 VFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE--A--TGELLFELVSHSTSKI 165 (624)
Q Consensus 92 V~leIv~~knlp~~~--k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE--~--TgeLvlELr~~~~~~L 165 (624)
+.|.|+..+||+... ....+-||.+.....+....-.+......++.|.+...|.=. . ...|.|+|..+..
T Consensus 16 L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~--- 92 (123)
T cd08390 16 LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR--- 92 (123)
T ss_pred EEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc---
Confidence 567899999998653 234677998876422222222233344578899887766543 1 3456777665554
Q ss_pred ccCCCcccccceeeecccccCCCCcceEeEEEEeec
Q 006945 166 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 201 (624)
Q Consensus 166 ~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~ 201 (624)
++...+||.+.|++++|... .....|++|.|
T Consensus 93 --~~~~~~iG~~~i~L~~l~~~---~~~~~w~~L~~ 123 (123)
T cd08390 93 --FSRHCIIGHVLFPLKDLDLV---KGGVVWRDLEP 123 (123)
T ss_pred --CCCCcEEEEEEEeccceecC---CCceEEEeCCC
Confidence 34678999999999999854 46679999865
No 35
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=97.06 E-value=0.0073 Score=52.97 Aligned_cols=99 Identities=16% Similarity=0.271 Sum_probs=68.8
Q ss_pred EEEEEEeecCcCCCcC-------CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeec--cCcEEEEEEeeCC
Q 006945 92 VFVEIVAVKNLPEDHK-------DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHST 162 (624)
Q Consensus 92 V~leIv~~knlp~~~k-------~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~--TgeLvlELr~~~~ 162 (624)
+.|.|+..+||+.... ...+-||.++..+ ...+. +.+.-..+|.|.+...|.+.. ...|.|+|..+..
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~kT-~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKS-KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEEc-cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 5678999999986531 2357788887653 22222 223345678999987777753 6677777765543
Q ss_pred CccccCCCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 163 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 163 ~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
+ +..+||.+.|++++|... . ..+.||+|.+.
T Consensus 80 -----~-~~~~iG~~~i~l~~l~~~-~--~~~~w~~L~~~ 110 (121)
T cd08391 80 -----D-KDDFLGRLSIDLGSVEKK-G--FIDEWLPLEDV 110 (121)
T ss_pred -----C-CCCcEEEEEEEHHHhccc-C--ccceEEECcCC
Confidence 3 567899999999999865 2 36999999864
No 36
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=97.06 E-value=0.0059 Score=54.47 Aligned_cols=104 Identities=12% Similarity=0.116 Sum_probs=72.8
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceE--eeecCCceeEEEEEee-c-----cCcEEEEEEeeCC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLT--ILSKSGMKQVASFQCE-A-----TGELLFELVSHST 162 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~--i~Se~~wkq~~~fqCE-~-----TgeLvlELr~~~~ 162 (624)
+.|.|+..++|+.... ...+-||.++....+. . +.++. -..++.|+...+|+.. + ...|.||++.+..
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~-~--~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHK-Q--STPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcc-c--ccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 4577899999986532 3468899887754222 1 22222 2467899998999987 4 4677788877655
Q ss_pred CccccCCCcccccceeeecccccCCCCcc--eEeEEEEeecCC
Q 006945 163 SKIPMTGASKTMGTASLSLQNFISPISKL--AVEQWFDLVPRS 203 (624)
Q Consensus 163 ~~L~~~r~sKllG~~sisw~dLL~~~s~L--S~Ekw~eL~~~~ 203 (624)
++...+||.+.|++.||+...+.- -...|++|..++
T Consensus 79 -----~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~ 116 (125)
T cd04051 79 -----SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS 116 (125)
T ss_pred -----CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC
Confidence 356789999999999999875431 256899998654
No 37
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=97.03 E-value=0.0048 Score=54.95 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=69.3
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCc--eeeccCcceEeeecCCceeEEEEEeec----cCcEEEEEEeeCCCc
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPD--IFFNAKQKLTILSKSGMKQVASFQCEA----TGELLFELVSHSTSK 164 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d--~~~k~~~~l~i~Se~~wkq~~~fqCE~----TgeLvlELr~~~~~~ 164 (624)
|.|.|+..+||+.... ...+-||+++..... ....-.+.+.-..+|.|++...|+... ...|.|++..+.. +
T Consensus 18 L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~-~ 96 (127)
T cd04030 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS-F 96 (127)
T ss_pred EEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc-c
Confidence 6678999999986633 557889988875221 111122333445678999988888752 3556666655443 2
Q ss_pred cccCCCcccccceeeecccccCCCCcceEeEEEEee
Q 006945 165 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 200 (624)
Q Consensus 165 L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~ 200 (624)
+ .+...+||.+.|++.+|... -..+.|++|+
T Consensus 97 ~--~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L~ 127 (127)
T cd04030 97 L--SREKKLLGQVLIDLSDLDLS---KGFTQWYDLT 127 (127)
T ss_pred c--CCCCceEEEEEEeccccccc---CCccceEECc
Confidence 1 25788999999999998543 3578999975
No 38
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=97.00 E-value=0.0049 Score=54.87 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=68.3
Q ss_pred EEEEEEEeecCcCCCc-CCCCceEEEEEccCCce-eeccCcceEeeecCCceeEEEEEeec-----cCcEEEEEEeeCCC
Q 006945 91 EVFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDI-FFNAKQKLTILSKSGMKQVASFQCEA-----TGELLFELVSHSTS 163 (624)
Q Consensus 91 EV~leIv~~knlp~~~-k~~~~lFVrl~k~q~d~-~~k~~~~l~i~Se~~wkq~~~fqCE~-----TgeLvlELr~~~~~ 163 (624)
.+.|.|+..+||+... ....+-||++... |+. -..-.+-+.-..++.|.+...|.--+ ..-|.|+|+-++.
T Consensus 17 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~-~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~- 94 (125)
T cd08386 17 TLTLKILKAVELPAKDFSGTSDPFVKIYLL-PDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR- 94 (125)
T ss_pred EEEEEEEEecCCCCccCCCCCCceEEEEEC-CCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC-
Confidence 3668899999998653 2346789988763 221 11111222334678999988776321 3457788887665
Q ss_pred ccccCCCcccccceeeecccccCCCCcceEeEEEEeec
Q 006945 164 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 201 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~ 201 (624)
+.+..+||.++|++.+|.. .-..+.|++|.|
T Consensus 95 ----~~~~~~iG~~~i~l~~l~~---~~~~~~W~~l~~ 125 (125)
T cd08386 95 ----FSRNDPIGEVSLPLNKVDL---TEEQTFWKDLKP 125 (125)
T ss_pred ----CcCCcEeeEEEEecccccC---CCCcceEEecCC
Confidence 4566789999999999884 335889999876
No 39
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=96.97 E-value=0.0059 Score=55.35 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=71.5
Q ss_pred EEEEEEEeecCcCCCcCCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeeccCcEEEEEEeeCCCccccCCC
Q 006945 91 EVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSHSTSKIPMTGA 170 (624)
Q Consensus 91 EV~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~TgeLvlELr~~~~~~L~~~r~ 170 (624)
++.|.|+..+.++.......+-||+++... ....+ .+-+.-..+|.|++...|+.+....|.|||.-+.. ++.
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~-~~~~k-T~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~-----~~~ 75 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDG-QPPKK-TEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHT-----LKA 75 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECC-cccEE-eeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCC-----CCC
Confidence 466777777755544434467888886541 11111 12223346889999899998877888888887765 456
Q ss_pred cccccceeeecccccCCCCcceEe--EEEEeecCC
Q 006945 171 SKTMGTASLSLQNFISPISKLAVE--QWFDLVPRS 203 (624)
Q Consensus 171 sKllG~~sisw~dLL~~~s~LS~E--kw~eL~~~~ 203 (624)
..+||.+.|++.+|+...+....+ .|++|+.++
T Consensus 76 ~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~ 110 (125)
T cd04021 76 DVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN 110 (125)
T ss_pred CcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC
Confidence 789999999999999774333332 489988543
No 40
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=96.97 E-value=0.0062 Score=55.42 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=69.4
Q ss_pred EEEEEEeecCcCCCc--CCCCceEEEEEccCCce--eeccC-cceEeeecCCceeEEEEEee----ccCcEEEEEEeeCC
Q 006945 92 VFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDI--FFNAK-QKLTILSKSGMKQVASFQCE----ATGELLFELVSHST 162 (624)
Q Consensus 92 V~leIv~~knlp~~~--k~~~~lFVrl~k~q~d~--~~k~~-~~l~i~Se~~wkq~~~fqCE----~TgeLvlELr~~~~ 162 (624)
+.|.|+..+||+... ....+-||.++.. |+. ..+-+ +-..-..+|.|.+...|.-. ...-|.|+|..++.
T Consensus 17 L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~-p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 17 LNVHVKECRNLAYGDEAKKRSNPYVKTYLL-PDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred EEEEEEEecCCCccCCCCCCCCcEEEEEEE-cCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 556778899998642 2457889998775 332 11112 22333467899997777765 24458888887664
Q ss_pred CccccCCCcccccceeeecccccCCCCcceEeEEEEee
Q 006945 163 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 200 (624)
Q Consensus 163 ~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~ 200 (624)
+++..+||.+.|++.+|-.. -..+.|++|+
T Consensus 96 -----~~~~~~lG~~~i~l~~~~~~---~~~~~w~~l~ 125 (125)
T cd04029 96 -----FGRNTFLGEVEIPLDSWNFD---SQHEECLPLH 125 (125)
T ss_pred -----CCCCcEEEEEEEeCCccccc---CCcccEEECc
Confidence 56788999999999999743 3389999985
No 41
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.96 E-value=0.0068 Score=53.73 Aligned_cols=100 Identities=11% Similarity=0.180 Sum_probs=69.2
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCce--eeccCcceEeeecCCceeEEEEEee-----ccCcEEEEEEeeCCC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDI--FFNAKQKLTILSKSGMKQVASFQCE-----ATGELLFELVSHSTS 163 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~--~~k~~~~l~i~Se~~wkq~~~fqCE-----~TgeLvlELr~~~~~ 163 (624)
+.|.|+..+||+.... ...+-||++.....+. ...-.+.+.-..+|.|++...|++- ...-|.|+|..++.
T Consensus 18 L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~- 96 (125)
T cd04031 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR- 96 (125)
T ss_pred EEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC-
Confidence 7788999999986533 4478899988763221 1122233445678899998888852 24567777777665
Q ss_pred ccccCCCcccccceeeecccccCCCCcceEeEEEEee
Q 006945 164 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 200 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~ 200 (624)
++...+||.+.|++++.... ..+.|++|.
T Consensus 97 ----~~~~~~iG~~~i~l~~~~~~----~~~~W~~L~ 125 (125)
T cd04031 97 ----DGENDFLGEVVIDLADALLD----DEPHWYPLQ 125 (125)
T ss_pred ----CCCCcEeeEEEEeccccccc----CCcceEECc
Confidence 46778999999999994332 236899974
No 42
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=96.91 E-value=0.016 Score=50.73 Aligned_cols=114 Identities=17% Similarity=0.218 Sum_probs=66.3
Q ss_pred EEEEEEeecCcCCCcCCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeecc--CcEEEEEEeeCCCccccCC
Q 006945 92 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEAT--GELLFELVSHSTSKIPMTG 169 (624)
Q Consensus 92 V~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~T--geLvlELr~~~~~~L~~~r 169 (624)
+.|.|+..+|||... ..+-||.++-.. ....+. +-..- .+|.|.+...|..... ..+.|++...+..- ..
T Consensus 2 L~v~vi~a~~l~~~~--~~dpyv~v~~~~-~~~~kT-~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~---~~ 73 (117)
T cd08383 2 LRLRILEAKNLPSKG--TRDPYCTVSLDQ-VEVART-KTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS---KD 73 (117)
T ss_pred eEEEEEEecCCCcCC--CCCceEEEEECC-EEeEec-ceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc---CC
Confidence 457899999999763 478898876542 222232 22233 6789999766665431 33444444433322 23
Q ss_pred CcccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCeeEEEEEee
Q 006945 170 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSF 219 (624)
Q Consensus 170 ~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pisLRVa~Si 219 (624)
....+|.+.|+..++ .-..+.|++|.|... .....=.|+|.++|
T Consensus 74 ~~~~~g~v~l~~~~~-----~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 RDIVIGKVALSKLDL-----GQGKDEWFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred CeeEEEEEEecCcCC-----CCcceeEEECccCCC-CCCcCceEEEEEEC
Confidence 445667665554433 224799999998754 22233367777654
No 43
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=96.90 E-value=0.0094 Score=52.21 Aligned_cols=103 Identities=18% Similarity=0.281 Sum_probs=71.5
Q ss_pred EEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee--ccCcEEEEEEeeCCCccccCC
Q 006945 93 FVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE--ATGELLFELVSHSTSKIPMTG 169 (624)
Q Consensus 93 ~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE--~TgeLvlELr~~~~~~L~~~r 169 (624)
.|.|+..+||+.... ...+-||++.... ....+ .+.+.-..++.|+....|... ....|.|++..+.. +.
T Consensus 2 ~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~~-T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~-----~~ 74 (115)
T cd04040 2 TVDVISAENLPSADRNGKSDPFVKFYLNG-EKVFK-TKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR-----GG 74 (115)
T ss_pred EEEEEeeeCCCCCCCCCCCCCeEEEEECC-Cccee-eceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCC-----CC
Confidence 477899999986532 3356788886642 11111 222334567899987777765 34668888777664 45
Q ss_pred CcccccceeeecccccCCCCcceEeEEEEeecCCCC
Q 006945 170 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 205 (624)
Q Consensus 170 ~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~ 205 (624)
+.++||.+.|++.+|... ...+.|++|.++++.
T Consensus 75 ~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~g~~ 107 (115)
T cd04040 75 KDDLLGSAYIDLSDLEPE---ETTELTLPLDGQGGG 107 (115)
T ss_pred CCCceEEEEEEHHHcCCC---CcEEEEEECcCCCCc
Confidence 778999999999999853 447999999987653
No 44
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=96.87 E-value=0.0079 Score=55.76 Aligned_cols=104 Identities=16% Similarity=0.221 Sum_probs=70.5
Q ss_pred EEEEEeecCcCCCcCCCCceEEEEEccCCce-eeccCcceEeeecCCceeEEEEEeec-----------------cCcEE
Q 006945 93 FVEIVAVKNLPEDHKDKGDLFVFFSKSQPDI-FFNAKQKLTILSKSGMKQVASFQCEA-----------------TGELL 154 (624)
Q Consensus 93 ~leIv~~knlp~~~k~~~~lFVrl~k~q~d~-~~k~~~~l~i~Se~~wkq~~~fqCE~-----------------TgeLv 154 (624)
.|.|+..+||+.......+-||++...+++. ...-.+.+....++.|.+...|+.-. ...|.
T Consensus 2 ~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (137)
T cd08675 2 SVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELR 81 (137)
T ss_pred EEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEE
Confidence 4678899999866223478899988765421 11222333445688999877777642 23455
Q ss_pred EEEEeeCCCccccCCCcccccceeeecccccCCCCcceEeEEEEeecCCC
Q 006945 155 FELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSG 204 (624)
Q Consensus 155 lELr~~~~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g 204 (624)
|||..+.. +....+||.+.|++++|... -..+.|++|.++..
T Consensus 82 i~V~d~~~-----~~~~~~IG~~~i~l~~l~~~---~~~~~W~~L~~~~~ 123 (137)
T cd08675 82 VELWHASM-----VSGDDFLGEVRIPLQGLQQA---GSHQAWYFLQPREA 123 (137)
T ss_pred EEEEcCCc-----CcCCcEEEEEEEehhhccCC---CcccceEecCCcCC
Confidence 55554443 45788999999999999844 34699999999853
No 45
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=96.86 E-value=0.0069 Score=54.08 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=68.9
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEe--eecCCceeEEEEEee-c----cCcEEEEEEeeCCC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTI--LSKSGMKQVASFQCE-A----TGELLFELVSHSTS 163 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i--~Se~~wkq~~~fqCE-~----TgeLvlELr~~~~~ 163 (624)
+.|.|+..+||+.... ...+-||+++..+ ... +.++.. ..++.|++...|... + ...|.|+|..+..
T Consensus 3 L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~--~~~--~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~- 77 (124)
T cd04049 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRT--QER--KSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN- 77 (124)
T ss_pred EEEEEEecCCCCCCCCCCCcCceEEEEECC--Eee--eeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-
Confidence 5678999999986432 3467788776532 111 112211 457899998888887 3 3567777766655
Q ss_pred ccccCCCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 164 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
+..-++||.+.|++.+|+.. + ..+.|++|+|+
T Consensus 78 ----~~~d~~iG~~~i~l~~l~~~-~--~~~~~~~l~p~ 109 (124)
T cd04049 78 ----FSDDDFIGEATIHLKGLFEE-G--VEPGTAELVPA 109 (124)
T ss_pred ----CCCCCeEEEEEEEhHHhhhC-C--CCcCceEeecc
Confidence 45678999999999999975 2 35999999996
No 46
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=96.84 E-value=0.0052 Score=54.33 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=68.3
Q ss_pred EEEEEEeecCcCCCcC--CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeec-----cCcEEEEEEeeCCCc
Q 006945 92 VFVEIVAVKNLPEDHK--DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA-----TGELLFELVSHSTSK 164 (624)
Q Consensus 92 V~leIv~~knlp~~~k--~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~-----TgeLvlELr~~~~~~ 164 (624)
+.|.|+..+||+.... ...+-||.+..........-.+-+.-..+|.|.+...|.+.+ ...|.|+|.-++.
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~-- 80 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR-- 80 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC--
Confidence 6688999999986532 346789988654222111122233344678999988887753 3568888877765
Q ss_pred cccCCCcccccceeeecccccCCCCcceEeEEEEeec
Q 006945 165 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 201 (624)
Q Consensus 165 L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~ 201 (624)
+.+..+||.+.|++.+|+.. .+|.+|.+
T Consensus 81 ---~~~dd~lG~~~i~l~~l~~~------~~~~~~~~ 108 (111)
T cd04041 81 ---FTADDRLGRVEIDLKELIED------RNWMGRRE 108 (111)
T ss_pred ---CCCCCcceEEEEEHHHHhcC------CCCCcccc
Confidence 45668999999999999954 57888764
No 47
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=96.81 E-value=0.0091 Score=54.18 Aligned_cols=99 Identities=15% Similarity=0.234 Sum_probs=69.8
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCce--eeccCcceEeeecCCceeEEEEEe-e----ccCcEEEEEEeeCCC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDI--FFNAKQKLTILSKSGMKQVASFQC-E----ATGELLFELVSHSTS 163 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~--~~k~~~~l~i~Se~~wkq~~~fqC-E----~TgeLvlELr~~~~~ 163 (624)
+.|.|+.++||+.... ...+.||++... |+. ..+++ ...- .++-|.....|+- . ....|.|+|..+..
T Consensus 18 L~V~Vi~a~nL~~~~~~~~~d~yVk~~ll-p~~~~~~kTk-v~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~- 93 (124)
T cd08389 18 LTVTVIRAQDIPTKDRGGASSWQVHLVLL-PSKKQRAKTK-VQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER- 93 (124)
T ss_pred EEEEEEEecCCCchhcCCCCCcEEEEEEc-cCCcceeecc-cccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC-
Confidence 6788999999996633 345679987543 332 22222 1222 6889999888883 2 35668888888865
Q ss_pred ccccCCCcccccceeeecccccCCCCcceEeEEEEeec
Q 006945 164 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 201 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~ 201 (624)
++...+||.+.|+|++|-.. =....|++|.|
T Consensus 94 ----~~~~~~lG~~~i~L~~l~~~---~~~~~w~~L~p 124 (124)
T cd08389 94 ----MRKERLIGEKVVPLSQLNLE---GETTVWLTLEP 124 (124)
T ss_pred ----cccCceEEEEEEeccccCCC---CCceEEEeCCC
Confidence 56788999999999999533 24789999876
No 48
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=96.71 E-value=0.014 Score=53.97 Aligned_cols=102 Identities=16% Similarity=0.262 Sum_probs=70.9
Q ss_pred EEEEEEeecCcCCCcCCCCceEEEEEccCCceeec--cCcceEeeecCCceeEEEEEee----ccCcEEEEEEeeCCCcc
Q 006945 92 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFN--AKQKLTILSKSGMKQVASFQCE----ATGELLFELVSHSTSKI 165 (624)
Q Consensus 92 V~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k--~~~~l~i~Se~~wkq~~~fqCE----~TgeLvlELr~~~~~~L 165 (624)
+.|.|+.++||+.......+.||++...-.+..++ -.+...-..+|.|.....|.-. .+..|.|+|..++.
T Consensus 17 L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~--- 93 (137)
T cd08409 17 LTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG--- 93 (137)
T ss_pred EEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC---
Confidence 66788899999855444579999997652223221 1123344578899987777764 34678899988877
Q ss_pred ccCCCcccccceeee------------cccccCCCCcceEeEEEEe
Q 006945 166 PMTGASKTMGTASLS------------LQNFISPISKLAVEQWFDL 199 (624)
Q Consensus 166 ~~~r~sKllG~~sis------------w~dLL~~~s~LS~Ekw~eL 199 (624)
.++..+||.++|. |+||++. |...+.+|=.|
T Consensus 94 --~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~-p~~~i~~WH~l 136 (137)
T cd08409 94 --VRKSKLLGRVVLGPFMYARGKELEHWNDMLSK-PKELIKRWHAL 136 (137)
T ss_pred --CCCcceEEEEEECCcccCCChHHHHHHHHHhC-CCCceeEEEeC
Confidence 4677899999997 7777766 56777777543
No 49
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=96.69 E-value=0.026 Score=50.38 Aligned_cols=101 Identities=16% Similarity=0.267 Sum_probs=68.4
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-c-cCcEEEEEEeeCCCccccC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~-TgeLvlELr~~~~~~L~~~ 168 (624)
+.|.|+..+||+.... ...+-||.++..+ ...+. +-+.-..++.|.+...|... + ..-|.|+|.-+.. +
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~--~~~kT-~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~-----~ 73 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG--QTLET-SVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL-----V 73 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC--EEEec-eeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC-----C
Confidence 4577888999886532 2357788886542 11222 22233467899987777765 2 4568888876654 4
Q ss_pred CCcccccceeeecccccCCCCcceEeEEEEeecCC
Q 006945 169 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 203 (624)
Q Consensus 169 r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~ 203 (624)
.+..+||.++|++.+|... . ..+.|++|.|..
T Consensus 74 ~~~~~iG~~~~~l~~l~~~-~--~~~~w~~L~~~~ 105 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQQA-K--QEEGWFRLLPDP 105 (123)
T ss_pred CCCcEeEEEEEEHHHcccC-C--CCCCEEECCCCC
Confidence 5668999999999999754 2 358899999863
No 50
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=96.68 E-value=0.013 Score=53.17 Aligned_cols=100 Identities=17% Similarity=0.322 Sum_probs=68.5
Q ss_pred EEEEEEeecCcCCCcCCCCceEEEEEccCCc---eeeccCcceEeeecCCceeEEEEEeec---cCcEEEEEEeeCCCcc
Q 006945 92 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPD---IFFNAKQKLTILSKSGMKQVASFQCEA---TGELLFELVSHSTSKI 165 (624)
Q Consensus 92 V~leIv~~knlp~~~k~~~~lFVrl~k~q~d---~~~k~~~~l~i~Se~~wkq~~~fqCE~---TgeLvlELr~~~~~~L 165 (624)
+.|.|+..+||+.......+-||+++.. |+ ...+-.+...-..+|.|++...|++.. ..-|+|+|..+...
T Consensus 14 L~V~Vi~ar~L~~~~~g~~dpYVkv~l~-p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~-- 90 (119)
T cd08685 14 LTLHVLEAKGLRSTNSGTCNSYVKISLS-PDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK-- 90 (119)
T ss_pred EEEEEEEEECCCCCCCCCCCeeEEEEEE-eCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC--
Confidence 7788999999986544446889998865 33 222122333455788999988898852 23466666665542
Q ss_pred ccCCCcccccceeeecccccCCCCcceEeEEEEe
Q 006945 166 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 199 (624)
Q Consensus 166 ~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL 199 (624)
++...+||.++|++.+++.. .. ++.||.|
T Consensus 91 --~~~~~~lG~~~i~l~~~~~~-~~--~~~Wy~l 119 (119)
T cd08685 91 --SRDSGLLGCMSFGVKSIVNQ-KE--ISGWYYL 119 (119)
T ss_pred --cCCCEEEEEEEecHHHhccC-cc--ccceEeC
Confidence 34567999999999999833 22 5899975
No 51
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=96.68 E-value=0.014 Score=53.04 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=71.5
Q ss_pred EEEEEEEeecCcCCCcC--CCCceEEEEEccCCce--ee-ccCcceEeeecCCceeEEEEEee----ccCcEEEEEEeeC
Q 006945 91 EVFVEIVAVKNLPEDHK--DKGDLFVFFSKSQPDI--FF-NAKQKLTILSKSGMKQVASFQCE----ATGELLFELVSHS 161 (624)
Q Consensus 91 EV~leIv~~knlp~~~k--~~~~lFVrl~k~q~d~--~~-k~~~~l~i~Se~~wkq~~~fqCE----~TgeLvlELr~~~ 161 (624)
++.|.|+..+|||.... ...+-||++... |+. .. +-.+-..-..+|.|+....|+.. ....|.|+|..++
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~-p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~ 94 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLL-PDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRD 94 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEE-cCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCC
Confidence 37789999999997632 457899999875 332 11 12233344468899998777775 2467888888776
Q ss_pred CCccccCCCcccccceeeecccccCCCCcceEeEEEEee
Q 006945 162 TSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 200 (624)
Q Consensus 162 ~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~ 200 (624)
. +++..+||.+.|+|.++-.. . ....|++|+
T Consensus 95 ~-----~~~~~~iG~~~i~L~~~~~~-~--~~~~W~~L~ 125 (125)
T cd08393 95 S-----LGRNSFLGEVEVDLGSWDWS-N--TQPTWYPLQ 125 (125)
T ss_pred C-----CCCCcEeEEEEEecCccccC-C--CCcceEECc
Confidence 5 46778999999999999533 2 357899874
No 52
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=96.67 E-value=0.032 Score=49.01 Aligned_cols=98 Identities=11% Similarity=0.251 Sum_probs=68.6
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCccccCC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTG 169 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~r 169 (624)
+.|.|+..+||+.... ...+-||++...+.. .+. +.+.-..+|.|.+...|+.. ....|.|+|..+.. +.
T Consensus 3 l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~--~~T-~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~-----~~ 74 (119)
T cd08377 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNAR--LQT-HTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDK-----DK 74 (119)
T ss_pred EEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe--eec-ceecCCcCCccCcEEEEEecCcCCEEEEEEEECCC-----CC
Confidence 4577889999986532 346789888765221 121 22233467899998888876 36778888876654 34
Q ss_pred CcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 170 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 170 ~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
+..+||.+.+++.+|... .++|+.|.+.
T Consensus 75 ~~~~iG~~~~~l~~~~~~-----~~~~~~l~~~ 102 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNG-----ERKWYALKDK 102 (119)
T ss_pred CCceeeEEEEEHHHCCCC-----CceEEECccc
Confidence 668999999999999754 3689999865
No 53
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=96.66 E-value=0.03 Score=50.32 Aligned_cols=117 Identities=13% Similarity=0.239 Sum_probs=73.0
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCccccCC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTG 169 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~r 169 (624)
++|.|+..+||+.... ...+-||.+.... ....+. +-+.-..++-|.+...|+.- ...-|.|++..+.. +.
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT-~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~-----~~ 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN-EVIIRT-ATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDT-----LS 74 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC-Eeeeee-eeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCC-----CC
Confidence 5688899999986643 3456788776431 111121 11222467889887777664 34667777765554 34
Q ss_pred CcccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCeeEEEEEe
Q 006945 170 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVS 218 (624)
Q Consensus 170 ~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pisLRVa~S 218 (624)
+..+||.+.|+++++... .-.++.|++|.+.... ...+=.|++.+|
T Consensus 75 ~d~~iG~~~~~~~~~~~~--~~~~~~W~~L~~~~~~-~~~~G~i~l~~~ 120 (121)
T cd04054 75 RDDVIGKVSLTREVISAH--PRGIDGWMNLTEVDPD-EEVQGEIHLELS 120 (121)
T ss_pred CCCEEEEEEEcHHHhccC--CCCCCcEEECeeeCCC-CccccEEEEEEE
Confidence 668899999999998753 2236899999875322 112235555544
No 54
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=96.62 E-value=0.012 Score=52.99 Aligned_cols=102 Identities=19% Similarity=0.258 Sum_probs=70.2
Q ss_pred EEEEEEeecCcCCCc-CCCCceEEEEEccCC--ceeeccCcceEeeecCCceeEEEEEee-c--cCcEEEEEEeeCCCcc
Q 006945 92 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQP--DIFFNAKQKLTILSKSGMKQVASFQCE-A--TGELLFELVSHSTSKI 165 (624)
Q Consensus 92 V~leIv~~knlp~~~-k~~~~lFVrl~k~q~--d~~~k~~~~l~i~Se~~wkq~~~fqCE-~--TgeLvlELr~~~~~~L 165 (624)
+.|.|+..+||+... ....+-||++..... +....-.+.+.....|.|.+...|+.. + ..-|.|+|..+..
T Consensus 15 l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~--- 91 (131)
T cd04026 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR--- 91 (131)
T ss_pred EEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC---
Confidence 668899999999652 234677888776421 112222233344568899998888865 2 2457777776553
Q ss_pred ccCCCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 166 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 166 ~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
+.+..+||.+.|++.+|+.. ..+.|++|...
T Consensus 92 --~~~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~ 122 (131)
T cd04026 92 --TTRNDFMGSLSFGVSELIKM----PVDGWYKLLNQ 122 (131)
T ss_pred --CCCcceeEEEEEeHHHhCcC----ccCceEECcCc
Confidence 45678999999999999954 57999999865
No 55
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=96.60 E-value=0.053 Score=49.10 Aligned_cols=117 Identities=12% Similarity=0.105 Sum_probs=76.2
Q ss_pred EEEEEEEeecCcCCCc-CCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCccccC
Q 006945 91 EVFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 91 EV~leIv~~knlp~~~-k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~ 168 (624)
.|.|.|+..++|+... ....+-||.+... ... .+. +-+.-..++.|++...|+.. +...|.|||.-+.. +
T Consensus 4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~-~~~-~kT-~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~-----~ 75 (126)
T cd04046 4 VTQVHVHSAEGLSKQDSGGGADPYVIIKCE-GES-VRS-PVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNL-----L 75 (126)
T ss_pred EEEEEEEeCcCCCCCCCCCCcCccEEEEEC-CEE-EEe-CccCCCCCCcccceEEEEecCCCCEEEEEEEECCC-----C
Confidence 3668889999998642 2346788888643 121 222 22333467899998778765 67788999987654 2
Q ss_pred CCcccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCe-eEEEEEeeec
Q 006945 169 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPI-SLRIAVSFTI 221 (624)
Q Consensus 169 r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pi-sLRVa~SiTP 221 (624)
+ -..||.++|+++++... ..+||+|.........+.. .|+|.+++++
T Consensus 76 ~-d~~lG~~~~~l~~~~~~-----~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 C-DEFLGQATLSADPNDSQ-----TLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred C-CCceEEEEEecccCCCc-----CceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 2 58999999999986532 4588898744322333333 6777777654
No 56
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=96.57 E-value=0.014 Score=46.70 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=67.1
Q ss_pred EEEEEeecCcCCC-cCCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeec--cCcEEEEEEeeCCCccccCC
Q 006945 93 FVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMTG 169 (624)
Q Consensus 93 ~leIv~~knlp~~-~k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~--TgeLvlELr~~~~~~L~~~r 169 (624)
.|.|+..++++.. .....+.||+++... ......+...-..++.|.+...|.... ...|.|+|..+.. +.
T Consensus 2 ~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~-----~~ 74 (102)
T cd00030 2 RVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDR-----FS 74 (102)
T ss_pred EEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCC-----CC
Confidence 4778888888864 335688999988874 111111222233678998877777775 7888898888877 34
Q ss_pred CcccccceeeecccccCCCCcceEeEEEEe
Q 006945 170 ASKTMGTASLSLQNFISPISKLAVEQWFDL 199 (624)
Q Consensus 170 ~sKllG~~sisw~dLL~~~s~LS~Ekw~eL 199 (624)
..++||.+.+++.+|.. ..-..+.|++|
T Consensus 75 ~~~~ig~~~~~l~~l~~--~~~~~~~~~~l 102 (102)
T cd00030 75 KDDFLGEVEIPLSELLD--SGKEGELWLPL 102 (102)
T ss_pred CCceeEEEEEeHHHhhh--cCCcCcceecC
Confidence 67899999999999981 22335566653
No 57
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=96.54 E-value=0.03 Score=53.21 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=68.1
Q ss_pred EEEEEEeecCcCCCcCCCCceEEEEEccCCce--eeccCcceEeeecCCceeEEEEEee------------c-----cCc
Q 006945 92 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDI--FFNAKQKLTILSKSGMKQVASFQCE------------A-----TGE 152 (624)
Q Consensus 92 V~leIv~~knlp~~~k~~~~lFVrl~k~q~d~--~~k~~~~l~i~Se~~wkq~~~fqCE------------~-----Tge 152 (624)
|.|.|+..+||+. .....+=||.++-..+.. -.+-.+-..-.-++.|.+...|... + ...
T Consensus 2 L~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 2 LSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred EEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 5688999999987 333467788776653221 0111122333457899998999883 1 234
Q ss_pred EEEEEEeeCCCccccCCCcccccceeeecccccCCCCcceEeEEEEeecCC
Q 006945 153 LLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 203 (624)
Q Consensus 153 LvlELr~~~~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~ 203 (624)
|.|+|..+.. ++...+||.+.|++++|.... -....||+|.+++
T Consensus 81 L~i~V~d~~~-----~~~ddfLG~v~i~l~~l~~~~--~~~~~W~~L~~~~ 124 (148)
T cd04010 81 LRVDLWHASM-----GGGDVFLGEVRIPLRGLDLQA--GSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEcCCC-----CCCCceeEEEEEecccccccC--CcCcceeecCCcc
Confidence 5555554443 467889999999999988541 1358999999874
No 58
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=96.50 E-value=0.045 Score=50.14 Aligned_cols=118 Identities=15% Similarity=0.138 Sum_probs=74.6
Q ss_pred EEEEEEEeecCcCCCc-CCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEE-ee-cc---------CcEEEEEE
Q 006945 91 EVFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQ-CE-AT---------GELLFELV 158 (624)
Q Consensus 91 EV~leIv~~knlp~~~-k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fq-CE-~T---------geLvlELr 158 (624)
++.|.|+..+||+... ....+-||.++... .-.+ .+-+....++.|++...|+ .+ ++ ..|.|||.
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~k-T~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN--QSQE-TEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC--eeeE-eeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 5778899999998653 34467788776541 1111 1223334678999987776 22 11 35788888
Q ss_pred eeCCCccccCCCcccccceee-ecccccCCCCcceEeEEEEeecCCCCCCCCCeeEEEEEeee
Q 006945 159 SHSTSKIPMTGASKTMGTASL-SLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFT 220 (624)
Q Consensus 159 ~~~~~~L~~~r~sKllG~~si-sw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pisLRVa~SiT 220 (624)
.++. +++..+||.+.| +...|..+.+.-...+|++|..+..+.+ +|-|++++-
T Consensus 79 d~d~-----~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~G----eil~~~~~~ 132 (135)
T cd04017 79 DQDS-----VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAG----ELLAAFELI 132 (135)
T ss_pred eCcC-----CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchh----heeEEeEEE
Confidence 7765 356689999987 4444444334556789999986543322 566666553
No 59
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=96.47 E-value=0.027 Score=50.26 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=71.8
Q ss_pred EEEEEEeecCcCCCc-CCCCceEEEEEccCCcee--eccCcceEeeecCCceeEEEEEeec----cCcEEEEEEeeCCCc
Q 006945 92 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIF--FNAKQKLTILSKSGMKQVASFQCEA----TGELLFELVSHSTSK 164 (624)
Q Consensus 92 V~leIv~~knlp~~~-k~~~~lFVrl~k~q~d~~--~k~~~~l~i~Se~~wkq~~~fqCE~----TgeLvlELr~~~~~~ 164 (624)
+.|.|+..+||+... ....+.||+++....+.. ..-.+.+.-..++.|++...|+... ...|.|+|..+..
T Consensus 16 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~-- 93 (134)
T cd00276 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS-- 93 (134)
T ss_pred EEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC--
Confidence 667788899998653 345799999987644321 1222334445688999988888763 3567777776665
Q ss_pred cccCCCcccccceeeecccccCCCCcceEeEEEEeecCC
Q 006945 165 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 203 (624)
Q Consensus 165 L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~ 203 (624)
++..++||.+.|++.+ . .-..+.|++|..+.
T Consensus 94 ---~~~~~~lG~~~i~l~~-~----~~~~~~W~~l~~~~ 124 (134)
T cd00276 94 ---VGRNEVIGQVVLGPDS-G----GEELEHWNEMLASP 124 (134)
T ss_pred ---CCCCceeEEEEECCCC-C----CcHHHHHHHHHhCC
Confidence 3577899999999999 2 22368999998763
No 60
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=96.44 E-value=0.02 Score=51.92 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=68.4
Q ss_pred EEEEEEeecCcCCCcCCCCceEEEEEccCCce--eecc-CcceEeeecCCceeEEEEEe-e----ccCcEEEEEEeeCCC
Q 006945 92 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDI--FFNA-KQKLTILSKSGMKQVASFQC-E----ATGELLFELVSHSTS 163 (624)
Q Consensus 92 V~leIv~~knlp~~~k~~~~lFVrl~k~q~d~--~~k~-~~~l~i~Se~~wkq~~~fqC-E----~TgeLvlELr~~~~~ 163 (624)
+.|.|+.++||+.......+-||.++.. |+. ..+. .+-..-..+|.|.+...|+- . ...-|.|+|.-+..
T Consensus 15 L~V~Vi~A~~L~~~~~~~~DpyVkv~l~-~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~- 92 (122)
T cd08381 15 LFVMVMHAKNLPLLDGSDPDPYVKTYLL-PDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS- 92 (122)
T ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEe-eCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC-
Confidence 6678899999986544457889998865 321 1121 22333457889999888775 2 35566677776654
Q ss_pred ccccCCCcccccceeeecccccCCCCcceEeEEEEe
Q 006945 164 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 199 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL 199 (624)
+++..+||.+.|+|.+|... . ..+.|++|
T Consensus 93 ----~~~~~~lG~~~i~l~~l~~~-~--~~~~W~~L 121 (122)
T cd08381 93 ----LVENEFLGGVCIPLKKLDLS-Q--ETEKWYPL 121 (122)
T ss_pred ----CcCCcEEEEEEEeccccccC-C--CccceEEC
Confidence 46778999999999999844 2 25889986
No 61
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=96.42 E-value=0.028 Score=51.78 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=70.3
Q ss_pred EEEEEEeecCcCCCc-C-CCCceEEEEEccCCce--eec-cCcceEeeecCCceeEEEEEeec----cCcEEEEEEeeCC
Q 006945 92 VFVEIVAVKNLPEDH-K-DKGDLFVFFSKSQPDI--FFN-AKQKLTILSKSGMKQVASFQCEA----TGELLFELVSHST 162 (624)
Q Consensus 92 V~leIv~~knlp~~~-k-~~~~lFVrl~k~q~d~--~~k-~~~~l~i~Se~~wkq~~~fqCE~----TgeLvlELr~~~~ 162 (624)
+.|.|+.++||+... . ...+-||+++.. |+. ..+ -.+...-..+|.|+....|+... ...|.|.|..+..
T Consensus 17 L~V~V~~a~nL~~~d~~~g~~dpYVkv~ll-p~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 17 LEITIKACRNLAYGDEKKKKCHPYVKVCLL-PDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred EEEEEEecCCCCccCCCCCCCCeEEEEEEE-eCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 557789999998652 2 457899999875 442 111 12333445778999988888752 4566666666554
Q ss_pred CccccCCCcccccceeeecccccCCCCcceEeEEEEee
Q 006945 163 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 200 (624)
Q Consensus 163 ~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~ 200 (624)
++...+||.+.|+|.++--....=..-+|+.|.
T Consensus 96 -----~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 96 -----LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred -----CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 567889999999999995443233466899873
No 62
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=96.41 E-value=0.023 Score=50.18 Aligned_cols=99 Identities=16% Similarity=0.245 Sum_probs=65.7
Q ss_pred EEEEEEeecCcCCCc--CCCCceEEEEEccCCcee---eccCcceEeeecCCceeEEEEEeec----cCcEEEEEEeeCC
Q 006945 92 VFVEIVAVKNLPEDH--KDKGDLFVFFSKSQPDIF---FNAKQKLTILSKSGMKQVASFQCEA----TGELLFELVSHST 162 (624)
Q Consensus 92 V~leIv~~knlp~~~--k~~~~lFVrl~k~q~d~~---~k~~~~l~i~Se~~wkq~~~fqCE~----TgeLvlELr~~~~ 162 (624)
+.|.|+..+||+... ....+-||++... |+.. ..-.+-..-..+|.|++...|+=.. ...|.|+|..+..
T Consensus 16 L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~-~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 94 (123)
T cd08521 16 LEVHIKECRNLAYADEKKKRSNPYVKVYLL-PDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR 94 (123)
T ss_pred EEEEEEEecCCCCcCCCCCCCCcEEEEEEe-cCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 567799999998654 2457889998765 3321 1111223334678999877776442 4567777776554
Q ss_pred CccccCCCcccccceeeecccccCCCCcceEeEEEEe
Q 006945 163 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 199 (624)
Q Consensus 163 ~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL 199 (624)
+.+..+||.+.|++++|... -..+.|+.|
T Consensus 95 -----~~~~~~iG~~~i~l~~l~~~---~~~~~w~~l 123 (123)
T cd08521 95 -----FGRNTFLGEVEIPLDSWDLD---SQQSEWYPL 123 (123)
T ss_pred -----CcCCceeeEEEEeccccccc---CCCccEEEC
Confidence 45668999999999999522 236889876
No 63
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=96.41 E-value=0.0014 Score=62.92 Aligned_cols=63 Identities=10% Similarity=0.068 Sum_probs=55.8
Q ss_pred cCCcceeec-c-Ccceeeecccccc---ccccccccccccccceeeeeeCCCCCcccee--EEEeccCcceee
Q 006945 325 KEGHLFELL-G-NRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKAI--ALLDLKSGVIKV 390 (624)
Q Consensus 325 ~dg~lfElS-~-~kPl~fisGr~m~---fE~~~ls~~~sgd~FVT~V~~spE~pYGea~--aLLdLk~~~feV 390 (624)
.++++|+.+ . +.|+.|..|.+.. +|.. +.++..++.+ .|.++|+++||+++ +++.++++.|.-
T Consensus 20 ~dG~v~dst~~~~~P~~f~~G~g~vi~gle~a-L~gm~~Ge~~--~v~ipp~~ayG~~d~~~v~~vp~~~f~~ 89 (156)
T PRK15095 20 DDGSTAESTRNNGKPALFRLGDGSLSEGLEQQ-LLGLKVGDKK--TFSLEPEAAFGVPSPDLIQYFSRRDFMD 89 (156)
T ss_pred CCCCEEEECCCCCCCEEEEeCCCCccHHHHHH-HcCCCCCCEE--EEEEChHHhcCCCChHHEEEecHHHCCc
Confidence 367899988 4 7999999998766 8888 9999999999 99999999999999 899999999854
No 64
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=96.37 E-value=0.066 Score=49.69 Aligned_cols=116 Identities=11% Similarity=0.109 Sum_probs=76.4
Q ss_pred EEEEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-c-cCcEEEEEEeeCCCccc
Q 006945 90 VEVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIP 166 (624)
Q Consensus 90 vEV~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~-TgeLvlELr~~~~~~L~ 166 (624)
=.|.|.|+..+||+.... ...+-||.++..+ ...+. +-+....+|.|+....|+.. + ..-|.|||.-+..
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~--~~~kT-~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~---- 87 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS--QEHKT-KVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF---- 87 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC--Eeeec-cccCCCCCCccCceEEEEecCccCCEEEEEEEECCC----
Confidence 457788999999986532 3467788877542 22222 22334467899997777774 2 4557788876654
Q ss_pred cCCCcccccceeeecccccCC--CCcceEeEEEEeecCCCCCCCCCeeEEEEEee
Q 006945 167 MTGASKTMGTASLSLQNFISP--ISKLAVEQWFDLVPRSGNVSSKPISLRIAVSF 219 (624)
Q Consensus 167 ~~r~sKllG~~sisw~dLL~~--~s~LS~Ekw~eL~~~~g~~ss~pisLRVa~Si 219 (624)
+.+..+||.+.|++.+|+.. ...-...+|+.|.... .-++++.++|
T Consensus 88 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~------~g~i~l~~~~ 135 (136)
T cd08375 88 -FSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVP------TGEVVVKLDL 135 (136)
T ss_pred -CCCCCeeEEEEEEHHHhccccccCCCcEEEEecccccc------ceeEEEEEEe
Confidence 34568999999999999972 1334457888875432 2466766665
No 65
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=96.31 E-value=0.026 Score=49.25 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=59.8
Q ss_pred EEEEEeecCcCCCcC-CCCceEEEEEccCCc---eeeccCcceEeeecCCceeEEEEEee------ccCcEEEEEEeeCC
Q 006945 93 FVEIVAVKNLPEDHK-DKGDLFVFFSKSQPD---IFFNAKQKLTILSKSGMKQVASFQCE------ATGELLFELVSHST 162 (624)
Q Consensus 93 ~leIv~~knlp~~~k-~~~~lFVrl~k~q~d---~~~k~~~~l~i~Se~~wkq~~~fqCE------~TgeLvlELr~~~~ 162 (624)
.+.++..++|+.... ...+-||++....-+ ....-.+.+....+|.|. ...|+++ +...|.|||.-+..
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 344556778875532 347889998765322 111222334445788999 5677664 26789999998875
Q ss_pred CccccCCCcccccceeeecccccCC
Q 006945 163 SKIPMTGASKTMGTASLSLQNFISP 187 (624)
Q Consensus 163 ~~L~~~r~sKllG~~sisw~dLL~~ 187 (624)
+.+-.+||.+.+++++|+..
T Consensus 82 -----~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 -----SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred -----CCCCcEEEEEEEEHHHHhcC
Confidence 45778999999999999944
No 66
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=96.28 E-value=0.091 Score=46.53 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=68.5
Q ss_pred EEEEEEEEeecCcCCCc---CCCCceEEEEEccCCce--eeccCcce-Eeee-cCCceeEEEEEee-c-cCcEEEEEEee
Q 006945 90 VEVFVEIVAVKNLPEDH---KDKGDLFVFFSKSQPDI--FFNAKQKL-TILS-KSGMKQVASFQCE-A-TGELLFELVSH 160 (624)
Q Consensus 90 vEV~leIv~~knlp~~~---k~~~~lFVrl~k~q~d~--~~k~~~~l-~i~S-e~~wkq~~~fqCE-~-TgeLvlELr~~ 160 (624)
+.+.|.|+..+||+... ....+.||.++....+. ..+.+.++ ...+ ++.|+....|+.. + ..-|.|+|..+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 35789999999998643 23468898887653221 11122222 2234 8899887777765 2 33466666655
Q ss_pred CCCccccCCCcccccceeeecccccCCCCcceEeEEEEeecCCCC
Q 006945 161 STSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGN 205 (624)
Q Consensus 161 ~~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~ 205 (624)
.. + ..++||.+.+++.+|..- .+|++|..+.+.
T Consensus 82 ~~-----~-~~~~iG~~~~~l~~l~~g------~~~~~l~~~~~~ 114 (128)
T cd00275 82 DS-----G-DDDFLGQACLPLDSLRQG------YRHVPLLDSKGE 114 (128)
T ss_pred CC-----C-CCcEeEEEEEEhHHhcCc------eEEEEecCCCCC
Confidence 44 3 668999999999999754 378999876554
No 67
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=96.23 E-value=0.02 Score=50.77 Aligned_cols=73 Identities=16% Similarity=0.318 Sum_probs=55.7
Q ss_pred ecCCceeEEEEEeec--cCcEEEEEEeeCCCccccCCCcccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCee
Q 006945 135 SKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPIS 212 (624)
Q Consensus 135 Se~~wkq~~~fqCE~--TgeLvlELr~~~~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pis 212 (624)
.++.|.+...|.+.. ...|.|+|..+.. + +...||.+.|+|.+|+.. +. ..+.||.|.. .+.-.
T Consensus 36 ~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-----~-~d~~iG~~~v~L~~l~~~-~~-~~~~w~~L~~------~~~G~ 101 (111)
T cd04052 36 NNPSWNASTEFLVTDRRKSRVTVVVKDDRD-----R-HDPVLGSVSISLNDLIDA-TS-VGQQWFPLSG------NGQGR 101 (111)
T ss_pred CCCccCCceEEEecCcCCCEEEEEEEECCC-----C-CCCeEEEEEecHHHHHhh-hh-ccceeEECCC------CCCCE
Confidence 578999999999873 4557777766554 4 678999999999999865 22 2789999984 23357
Q ss_pred EEEEEeeec
Q 006945 213 LRIAVSFTI 221 (624)
Q Consensus 213 LRVa~SiTP 221 (624)
|++.+.++|
T Consensus 102 i~~~~~~~p 110 (111)
T cd04052 102 IRISALWKP 110 (111)
T ss_pred EEEEEEEec
Confidence 888888887
No 68
>PLN03008 Phospholipase D delta
Probab=96.21 E-value=0.059 Score=63.91 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=69.4
Q ss_pred ecCCceeEEEEEee-ccCcEEEEEEeeCCCccccCCCcccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCeeE
Q 006945 135 SKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISL 213 (624)
Q Consensus 135 Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pisL 213 (624)
-++.|.+..+|+|. +...|+|+|.-++. +. ..+||.+.|++++|+.- -.++.||+|...++.--.+--.|
T Consensus 100 ~NPvWNE~F~f~vah~~s~L~f~VkD~D~-----~g-aD~IG~a~IPL~~L~~G---e~vd~Wl~Ll~~~~kp~k~~~kl 170 (868)
T PLN03008 100 QEPLWDEKFNISIAHPFAYLEFQVKDDDV-----FG-AQIIGTAKIPVRDIASG---ERISGWFPVLGASGKPPKAETAI 170 (868)
T ss_pred CCCCcceeEEEEecCCCceEEEEEEcCCc-----cC-CceeEEEEEEHHHcCCC---CceEEEEEccccCCCCCCCCcEE
Confidence 47899999999998 67788888877655 33 47999999999999954 34899999998876333333699
Q ss_pred EEEEeeecCCccceeeeee
Q 006945 214 RIAVSFTIPTLAPHLLRMV 232 (624)
Q Consensus 214 RVa~SiTPPvqAPYlLk~V 232 (624)
||.+-++|=-+-|+.=+=|
T Consensus 171 ~v~lqf~pv~~~~~~~~gv 189 (868)
T PLN03008 171 FIDMKFTPFDQIHSYRCGI 189 (868)
T ss_pred EEEEEEEEccccccccccc
Confidence 9999999987777544444
No 69
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=96.18 E-value=0.041 Score=51.28 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=68.1
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCcee--eccC-cceEeeecCCceeEEEEEee----ccCcEEEEEEeeCCC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIF--FNAK-QKLTILSKSGMKQVASFQCE----ATGELLFELVSHSTS 163 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~--~k~~-~~l~i~Se~~wkq~~~fqCE----~TgeLvlELr~~~~~ 163 (624)
+.|.|+.++||+.... ...+.||++.....+.. .+-+ +...-..++.|+....|+=. .+..|.|+|..+..
T Consensus 17 L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~- 95 (138)
T cd08408 17 LSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK- 95 (138)
T ss_pred EEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC-
Confidence 5577888999986532 45789999987633321 1112 22334478899988888764 46688888888876
Q ss_pred ccccCCCcccccceeee-----------cccccCCCCcceEeEEEEe
Q 006945 164 KIPMTGASKTMGTASLS-----------LQNFISPISKLAVEQWFDL 199 (624)
Q Consensus 164 ~L~~~r~sKllG~~sis-----------w~dLL~~~s~LS~Ekw~eL 199 (624)
+++.+.||.++|. |.+|++. +...+++|-.|
T Consensus 96 ----~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~-~~~~v~~WH~l 137 (138)
T cd08408 96 ----MKRKEMIGWFSLGLNSSGEEEEEHWNEMKES-KGQQVCRWHTL 137 (138)
T ss_pred ----CCCCcEEEEEEECCcCCCchHHHHHHHHHhC-CCCEEeEeeec
Confidence 4677899998887 5555554 56666666543
No 70
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=96.16 E-value=0.11 Score=47.06 Aligned_cols=105 Identities=10% Similarity=0.258 Sum_probs=70.7
Q ss_pred EEEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCcc---
Q 006945 91 EVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKI--- 165 (624)
Q Consensus 91 EV~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L--- 165 (624)
.+.|.|+..++||.... ...+-||+++..+ ...+ .+.+.-..+|.|.+...|++. +..-|.|+|.-++....
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~--~~~k-T~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK--TKKR-TKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC--Eeee-cceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 46688999999986532 3467798887531 1111 122333467899999999996 56678888876654221
Q ss_pred -cc--CCCcccccceeeecccccCCCCcceEeEEEEeecCC
Q 006945 166 -PM--TGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 203 (624)
Q Consensus 166 -~~--~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~ 203 (624)
++ ...-.+||.+.|++.++... .+.|++|.+++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~-----~~~w~~L~~~~ 114 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGE-----MDVWYNLEKRT 114 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCC-----CCeEEECccCC
Confidence 01 13577999999999997533 46899999874
No 71
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=96.13 E-value=0.037 Score=49.34 Aligned_cols=90 Identities=10% Similarity=0.134 Sum_probs=61.9
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCc--eeeccCcceEeeecCCceeEEEEE-e--e--ccCcEEEEEEeeCCC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPD--IFFNAKQKLTILSKSGMKQVASFQ-C--E--ATGELLFELVSHSTS 163 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d--~~~k~~~~l~i~Se~~wkq~~~fq-C--E--~TgeLvlELr~~~~~ 163 (624)
+.|.|+..+||+.... ...+.||++...... ....-.+-+....+|.|++...|+ . + ...-|.|+|..+..
T Consensus 17 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~- 95 (123)
T cd04035 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR- 95 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC-
Confidence 6788999999986532 457899998774221 111222333445789999988885 2 2 23567788876654
Q ss_pred ccccCCCcccccceeeecccccCC
Q 006945 164 KIPMTGASKTMGTASLSLQNFISP 187 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~ 187 (624)
+ ...+||.+.|++.+|+..
T Consensus 96 ----~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 96 ----F-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred ----c-CCeeEEEEEEEcccCCCC
Confidence 4 678999999999999955
No 72
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=96.12 E-value=0.036 Score=50.53 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=56.5
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCc--eeeccCcceEeeecCCceeEEEEEeec----cCcEEEEEEeeCCCc
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPD--IFFNAKQKLTILSKSGMKQVASFQCEA----TGELLFELVSHSTSK 164 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d--~~~k~~~~l~i~Se~~wkq~~~fqCE~----TgeLvlELr~~~~~~ 164 (624)
|.|.|+..+||+.... ...+-||+++..... ...+-.+...-..+|.|++...|+... ...|.|+|.-+..
T Consensus 17 l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~-- 94 (136)
T cd08402 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR-- 94 (136)
T ss_pred EEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC--
Confidence 6678899999986532 346789988764211 111112223344678999987777652 2357788877665
Q ss_pred cccCCCcccccceeeeccc
Q 006945 165 IPMTGASKTMGTASLSLQN 183 (624)
Q Consensus 165 L~~~r~sKllG~~sisw~d 183 (624)
+.+..+||.+.|++..
T Consensus 95 ---~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 95 ---IGKNDPIGKVVLGCNA 110 (136)
T ss_pred ---CCCCceeEEEEECCcc
Confidence 4566899999997654
No 73
>PLN02270 phospholipase D alpha
Probab=96.05 E-value=0.059 Score=63.59 Aligned_cols=89 Identities=10% Similarity=0.269 Sum_probs=72.7
Q ss_pred ecCCceeEEEEEee-ccCcEEEEEEeeCCCccccCCCcccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCeeE
Q 006945 135 SKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISL 213 (624)
Q Consensus 135 Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pisL 213 (624)
.++.|.+..++||- +.-+++|.|--... + .+.+||.+.|+-++|+.- . .+++||+|...++.--.+-..|
T Consensus 71 ~~p~w~e~f~i~~ah~~~~v~f~vkd~~~-----~-g~~~ig~~~~p~~~~~~g-~--~i~~~~~~~~~~~~p~~~~~~~ 141 (808)
T PLN02270 71 KNPRWYESFHIYCAHMASNIIFTVKDDNP-----I-GATLIGRAYIPVEEILDG-E--EVDRWVEILDNDKNPIHGGSKI 141 (808)
T ss_pred CCCccccceEEeeccCcceEEEEEecCCc-----c-CceEEEEEEEEHHHhcCC-C--ccccEEeccCCCCCcCCCCCEE
Confidence 47899999999999 88999998865544 2 556999999999999976 3 4999999998765544455799
Q ss_pred EEEEeeecCCccceeeeee
Q 006945 214 RIAVSFTIPTLAPHLLRMV 232 (624)
Q Consensus 214 RVa~SiTPPvqAPYlLk~V 232 (624)
||.+-|||=.+.|+.=+-|
T Consensus 142 ~~~~~f~~~~~~~~~~~gv 160 (808)
T PLN02270 142 HVKLQYFEVTKDRNWGRGI 160 (808)
T ss_pred EEEEEEEEcccCcchhccc
Confidence 9999999988888766665
No 74
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=95.85 E-value=0.068 Score=43.33 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=63.8
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeec--cCcEEEEEEeeCCCccccC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEA--TGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~--TgeLvlELr~~~~~~L~~~ 168 (624)
+.+.|+..++|+.... ...+.||+++.........-.+...-..++.|.....|++-. ...|.|+|..+.+ .
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~-----~ 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDR-----F 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCC-----c
Confidence 4577888888886643 457899998877432111111222223488999988999874 6778777776665 3
Q ss_pred CCcccccceeeecccccCC
Q 006945 169 GASKTMGTASLSLQNFISP 187 (624)
Q Consensus 169 r~sKllG~~sisw~dLL~~ 187 (624)
....++|.++|+|.++...
T Consensus 77 ~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred cCCceeEEEEEEHHHcccC
Confidence 3678999999999999865
No 75
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=95.78 E-value=0.1 Score=47.98 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=67.8
Q ss_pred EEEEEEeecCcCCCcCCCCceEEEEEcc---CCceeeccC-cceEeeecCCceeEEEEEeec-----cCcEEEEEEeeCC
Q 006945 92 VFVEIVAVKNLPEDHKDKGDLFVFFSKS---QPDIFFNAK-QKLTILSKSGMKQVASFQCEA-----TGELLFELVSHST 162 (624)
Q Consensus 92 V~leIv~~knlp~~~k~~~~lFVrl~k~---q~d~~~k~~-~~l~i~Se~~wkq~~~fqCE~-----TgeLvlELr~~~~ 162 (624)
+.|.|+..+||+.......+=||.++-. .++..-+.+ +......+|-|.....|.--+ ...|.|+|.-+.
T Consensus 2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d- 80 (120)
T cd08395 2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC- 80 (120)
T ss_pred EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec-
Confidence 4578899999987543446888888764 233211111 122333478898866666531 233666666654
Q ss_pred CccccCCCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 163 SKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 163 ~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
. +++..+||.+.|+|.+|... . ..+.|++|.+.
T Consensus 81 -~---~~~dd~IG~~~l~l~~~~~~-~--~~~~w~~L~~~ 113 (120)
T cd08395 81 -F---ARDDRLVGVTVLQLRDIAQA-G--SCACWLPLGRR 113 (120)
T ss_pred -c---cCCCCEEEEEEEEHHHCcCC-C--cEEEEEECcCc
Confidence 3 56788999999999999955 3 47889999764
No 76
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=95.75 E-value=0.23 Score=45.04 Aligned_cols=101 Identities=15% Similarity=0.235 Sum_probs=65.5
Q ss_pred EEEEEEeecCcCCC-c-CCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCccccC
Q 006945 92 VFVEIVAVKNLPED-H-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 92 V~leIv~~knlp~~-~-k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~ 168 (624)
+.|.|+..+||+.. . ....+-||.+... -....+. +...-+.+|.|.....|..- ....|.|+|..++. +
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~-~~~~~kT-~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~-----~ 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD-QEEVFRT-KTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDV-----L 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC-CccEEEe-eEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCC-----C
Confidence 34678889999864 2 1235678877553 1111222 22223467899887666664 24566666655554 4
Q ss_pred CCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 169 GASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 169 r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
.+-.+||.++|++++|... -..+.|++|.|.
T Consensus 75 ~~~~~iG~~~i~l~~l~~~---~~~~~w~~L~~~ 105 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHKY---YGKDTWFPLQPV 105 (121)
T ss_pred CCCceEEEEEEEHHHccCC---CCcEeeEEEEcc
Confidence 5667899999999999854 236999999985
No 77
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=95.71 E-value=0.086 Score=47.93 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=64.3
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCc-eeeccCcc-eEeeecCCceeEEEEEeec--c--CcEEEEEEeeCCCc
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPD-IFFNAKQK-LTILSKSGMKQVASFQCEA--T--GELLFELVSHSTSK 164 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d-~~~k~~~~-l~i~Se~~wkq~~~fqCE~--T--geLvlELr~~~~~~ 164 (624)
+.|.|+..++|+.... ...+-||++...... ...+.+.+ ..-..++.|++...|+... . ..|.|+|.-+..
T Consensus 16 L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~-- 93 (134)
T cd08403 16 LTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR-- 93 (134)
T ss_pred EEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC--
Confidence 6688999999986533 347889988764111 11122222 2334678999988887752 2 347788887665
Q ss_pred cccCCCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 165 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 165 L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
++...+||.+.|+... +.-..+.|+++..+
T Consensus 94 ---~~~~~~IG~~~l~~~~-----~~~~~~~w~~~~~~ 123 (134)
T cd08403 94 ---VGHNELIGVCRVGPNA-----DGQGREHWNEMLAN 123 (134)
T ss_pred ---CCCCceeEEEEECCCC-----CCchHHHHHHHHHC
Confidence 4677899999997652 12234667776554
No 78
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=95.69 E-value=0.065 Score=42.98 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=57.0
Q ss_pred EEEEEEeecCcCCCc-CCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee--ccCcEEEEEEeeCCCccccC
Q 006945 92 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE--ATGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 92 V~leIv~~knlp~~~-k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE--~TgeLvlELr~~~~~~L~~~ 168 (624)
+.|.|++.+||+... ....+.||+++...........+...-...+.|.+...|++. ....|.|+|..... +
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~-----~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDS-----F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETS-----S
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCC-----C
Confidence 457889999999743 345899999988864431111122333377899999999965 57779899887776 5
Q ss_pred CCcccccce
Q 006945 169 GASKTMGTA 177 (624)
Q Consensus 169 r~sKllG~~ 177 (624)
.+.++||.+
T Consensus 76 ~~~~~iG~~ 84 (85)
T PF00168_consen 76 GKDELIGEV 84 (85)
T ss_dssp SSEEEEEEE
T ss_pred CCCCEEEEE
Confidence 568888875
No 79
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=95.56 E-value=0.081 Score=50.77 Aligned_cols=98 Identities=15% Similarity=0.290 Sum_probs=65.2
Q ss_pred EEEEEEEEEeecCcCCCcC-CCCceEEEEEccCCce--------------------------eeccCcceEeeecCCcee
Q 006945 89 IVEVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDI--------------------------FFNAKQKLTILSKSGMKQ 141 (624)
Q Consensus 89 vvEV~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~--------------------------~~k~~~~l~i~Se~~wkq 141 (624)
+..+.|.|++.+||+.... ...+=||++...+... ...-.+-..-..++.|.+
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE 106 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE 106 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc
Confidence 4456677789999885422 3467788775431111 111122233346789999
Q ss_pred EEEEEeec--cCcEEEEEEeeCCCccccCCCcccccceeeecccccCCCCcceEeEEEEe
Q 006945 142 VASFQCEA--TGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 199 (624)
Q Consensus 142 ~~~fqCE~--TgeLvlELr~~~~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL 199 (624)
...|+... ..-|.|+|.-+. ..+||.++|++++|... -++.||+|
T Consensus 107 ~F~f~v~~~~~~~L~i~V~D~d---------d~~IG~v~i~l~~l~~~----~~d~W~~L 153 (153)
T cd08676 107 TFRFEVEDVSNDQLHLDIWDHD---------DDFLGCVNIPLKDLPSC----GLDSWFKL 153 (153)
T ss_pred EEEEEeccCCCCEEEEEEEecC---------CCeEEEEEEEHHHhCCC----CCCCeEeC
Confidence 88998873 567888887665 56899999999999932 26999986
No 80
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=95.48 E-value=0.17 Score=47.64 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=69.5
Q ss_pred EEEEEeecCcCCCcCCCCceEEEEEccCCcee---------eccC-cceEeeecCCc-eeEEEEEeeccCcEEEEEEeeC
Q 006945 93 FVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIF---------FNAK-QKLTILSKSGM-KQVASFQCEATGELLFELVSHS 161 (624)
Q Consensus 93 ~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~---------~k~~-~~l~i~Se~~w-kq~~~fqCE~TgeLvlELr~~~ 161 (624)
-|.++.++||+...-...+=||.+....-+.. .+.+ +-+.-..+|.| .....|+..+...|.|||.-+.
T Consensus 4 ~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~D~~ 83 (137)
T cd08691 4 SLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVKDKF 83 (137)
T ss_pred EEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEEecC
Confidence 36677789998432234677887766411111 1112 22233358899 8888888877778888887543
Q ss_pred CCccccCCC--cccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 162 TSKIPMTGA--SKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 162 ~~~L~~~r~--sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
.. .+. ...||.+.|++.+|+.....--.+.|+.|...
T Consensus 84 ~~----~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~ 122 (137)
T cd08691 84 AK----SRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR 122 (137)
T ss_pred CC----CCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence 21 122 48999999999999977555558899998854
No 81
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=95.46 E-value=0.11 Score=47.26 Aligned_cols=101 Identities=13% Similarity=0.148 Sum_probs=63.9
Q ss_pred EEEEEEeecCcCCCc-CCCCceEEEEEccCCce--eeccCcceEeeecCCceeEEEEEee--c--cCcEEEEEEeeCCCc
Q 006945 92 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPDI--FFNAKQKLTILSKSGMKQVASFQCE--A--TGELLFELVSHSTSK 164 (624)
Q Consensus 92 V~leIv~~knlp~~~-k~~~~lFVrl~k~q~d~--~~k~~~~l~i~Se~~wkq~~~fqCE--~--TgeLvlELr~~~~~~ 164 (624)
+.|.|+..+||+... ....+.||+++....+. ...-.+.+.-..+|.|+....|+=. . ..-|.|+|..++.
T Consensus 17 L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~-- 94 (136)
T cd08405 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR-- 94 (136)
T ss_pred EEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC--
Confidence 668889999998642 24478899887642121 1111233444567899886666532 2 3467888887765
Q ss_pred cccCCCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 165 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 165 L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
+.+..+||.++|++.+... -.+.|++|..+
T Consensus 95 ---~~~~~~lG~~~i~~~~~~~-----~~~~w~~~~~~ 124 (136)
T cd08405 95 ---LSRNDLIGKIYLGWKSGGL-----ELKHWKDMLSK 124 (136)
T ss_pred ---CCCCcEeEEEEECCccCCc-----hHHHHHHHHhC
Confidence 4566899999999877522 14566665543
No 82
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=95.44 E-value=0.14 Score=48.88 Aligned_cols=105 Identities=17% Similarity=0.145 Sum_probs=71.3
Q ss_pred EEEEEEEeecCcCCC--cCCCCceEEEEEccCCcee--eccC-cceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCc
Q 006945 91 EVFVEIVAVKNLPED--HKDKGDLFVFFSKSQPDIF--FNAK-QKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSK 164 (624)
Q Consensus 91 EV~leIv~~knlp~~--~k~~~~lFVrl~k~q~d~~--~k~~-~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~ 164 (624)
.+.|.|+.++||+.. .....+-||++... |+.- .+.+ +-..-..++.|.+...|.-. ....|.|+|..+..
T Consensus 30 ~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Ll-p~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~-- 106 (146)
T cd04028 30 QLEVEVIRARGLVQKPGSKVLPAPYVKVYLL-EGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG-- 106 (146)
T ss_pred EEEEEEEEeeCCCcccCCCCCcCCeEEEEEE-CCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC--
Confidence 366888899999863 22346789999875 4421 1222 22334477899997777776 56677777764322
Q ss_pred cccCCCcccccceeeecccccCCCCcceEeEEEEeecCC
Q 006945 165 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 203 (624)
Q Consensus 165 L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~ 203 (624)
++++..+||.+.|+|.++-.. . ....|++|.|..
T Consensus 107 --~~~~~~~iG~~~i~L~~l~~~-~--~~~~Wy~L~~~~ 140 (146)
T cd04028 107 --RMDKKVFMGVAQILLDDLDLS-N--LVIGWYKLFPTS 140 (146)
T ss_pred --CCCCCceEEEEEEEcccccCC-C--CceeEEecCCcc
Confidence 246678999999999998422 2 257899999874
No 83
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=95.43 E-value=0.12 Score=48.37 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=68.0
Q ss_pred EEEEEEeecCcCCCc-CCCCceEEEEEccCCc--eeeccCcce-EeeecCCceeEEEEEee----ccCcEEEEEEeeCCC
Q 006945 92 VFVEIVAVKNLPEDH-KDKGDLFVFFSKSQPD--IFFNAKQKL-TILSKSGMKQVASFQCE----ATGELLFELVSHSTS 163 (624)
Q Consensus 92 V~leIv~~knlp~~~-k~~~~lFVrl~k~q~d--~~~k~~~~l-~i~Se~~wkq~~~fqCE----~TgeLvlELr~~~~~ 163 (624)
+.|.|+.++||+... ....+-||.+... |+ ...+.+.++ .-..+|.|.....|.-. ...-|.|+|..++.
T Consensus 17 L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~-~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~- 94 (136)
T cd08406 17 LTVVVVKARNLVWDNGKTTADPFVKVYLL-QDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE- 94 (136)
T ss_pred EEEEEEEeeCCCCccCCCCCCeEEEEEEE-eCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC-
Confidence 678889999999653 3457899999875 33 222222222 23468899998788764 24556666766654
Q ss_pred ccccCCCcccccceeee----------cccccCCCCcceEeEEEEe
Q 006945 164 KIPMTGASKTMGTASLS----------LQNFISPISKLAVEQWFDL 199 (624)
Q Consensus 164 ~L~~~r~sKllG~~sis----------w~dLL~~~s~LS~Ekw~eL 199 (624)
+.+..+||.+.|. |+||++. +...+++|=.|
T Consensus 95 ----~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~-~~~~v~~WH~l 135 (136)
T cd08406 95 ----DGKTPNVGHVIIGPAASGMGLSHWNQMLAS-LRKPVAMWHPL 135 (136)
T ss_pred ----CCCCCeeEEEEECCCCCChhHHHHHHHHHC-CCCeeeEeeec
Confidence 4567889999887 6777766 67777777554
No 84
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=95.36 E-value=0.077 Score=50.79 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=69.2
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCcee-eccC-cceEeeecCCceeEEEEEee-----ccCcEEEEEEeeCCC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIF-FNAK-QKLTILSKSGMKQVASFQCE-----ATGELLFELVSHSTS 163 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~-~k~~-~~l~i~Se~~wkq~~~fqCE-----~TgeLvlELr~~~~~ 163 (624)
+.|.|+..+|||.... ...+-||.+.......- .+.+ +-+.-..++.|++...|+.- ...-|.|+|..++.
T Consensus 29 L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~- 107 (162)
T cd04020 29 LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK- 107 (162)
T ss_pred EEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC-
Confidence 7889999999997642 44678998866432211 1111 22333467899998888753 12346677776654
Q ss_pred ccccCCCcccccceeeecccccCCCCcceEeEEEEeec
Q 006945 164 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 201 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~ 201 (624)
+++..+||.+.|++.++... ...+.|++|..
T Consensus 108 ----~~~d~~lG~v~i~l~~~~~~---~~~~~w~~~~~ 138 (162)
T cd04020 108 ----LSSNDFLGGVRLGLGTGKSY---GQAVDWMDSTG 138 (162)
T ss_pred ----CCCCceEEEEEEeCCccccC---CCccccccCCh
Confidence 46788999999999998844 23689999864
No 85
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=95.24 E-value=0.16 Score=47.21 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=67.4
Q ss_pred CCceEEEEEEEEEeecCcCCCcCCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEe-e--ccCcEEEEEEeeC
Q 006945 85 PDLKIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQC-E--ATGELLFELVSHS 161 (624)
Q Consensus 85 ~~r~vvEV~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqC-E--~TgeLvlELr~~~ 161 (624)
..+-+-.|.|-|+..+||+.......+-||++....- ..++ +-+....++.|++...|+- + ....|.|||.-+.
T Consensus 23 ~~~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~--~~kT-~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 23 TRRGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQ--EKRT-EVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred CcCCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCc--cccC-ceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 3455567889999999998643344678998876421 1222 3334446789999888863 3 3677888888777
Q ss_pred CCccccCCCcccccceeeecccccCC
Q 006945 162 TSKIPMTGASKTMGTASLSLQNFISP 187 (624)
Q Consensus 162 ~~~L~~~r~sKllG~~sisw~dLL~~ 187 (624)
. +.+-.+||.+.|+|.+..+.
T Consensus 100 ~-----~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 N-----GWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred C-----CCCCCeeEEEEEEecCCcee
Confidence 6 45778999999999988754
No 86
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=95.15 E-value=0.21 Score=45.67 Aligned_cols=102 Identities=11% Similarity=0.131 Sum_probs=63.3
Q ss_pred EEEEEEEeecCcCCCcC-CCCceEEEEEccCCc-eeeccC-cceEeeecCCceeEEEEEee--ccCc--EEEEEEeeCCC
Q 006945 91 EVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPD-IFFNAK-QKLTILSKSGMKQVASFQCE--ATGE--LLFELVSHSTS 163 (624)
Q Consensus 91 EV~leIv~~knlp~~~k-~~~~lFVrl~k~q~d-~~~k~~-~~l~i~Se~~wkq~~~fqCE--~Tge--LvlELr~~~~~ 163 (624)
++.|.|+..+||+.... ...+-||++...... ...+.+ +...-..+|.|.....|+.. .... |.|+|..+..
T Consensus 16 ~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~- 94 (136)
T cd08404 16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR- 94 (136)
T ss_pred eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC-
Confidence 47788899999986532 346889988764211 111212 22223467899886666653 2334 4455555554
Q ss_pred ccccCCCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 164 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
+.+..+||.+.|++++.. . ..+.|++|..+
T Consensus 95 ----~~~~~~iG~~~~~~~~~~-~----~~~~w~~l~~~ 124 (136)
T cd08404 95 ----VTKNEVIGRLVLGPKASG-S----GGHHWKEVCNP 124 (136)
T ss_pred ----CCCCccEEEEEECCcCCC-c----hHHHHHHHHhC
Confidence 456789999999988822 2 26778887654
No 87
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=95.10 E-value=0.14 Score=48.46 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=63.3
Q ss_pred EEEEEEeecCcCCCcCCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCccccCCC
Q 006945 92 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMTGA 170 (624)
Q Consensus 92 V~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~r~ 170 (624)
+.|.|++.+||+.......+-||+++..+ ...+ .+.+.-..+|.|++...|.-. +..-|.|+++-+.. +..
T Consensus 4 L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~--~~~k-T~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~-----~~~ 75 (145)
T cd04038 4 LKVRVVRGTNLAVRDFTSSDPYVVLTLGN--QKVK-TRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDT-----FSK 75 (145)
T ss_pred EEEEEEeeECCCCCCCCCcCcEEEEEECC--EEEE-eeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCC-----CCC
Confidence 66889999999855334467898887642 1122 223334467899988778776 67778888887765 455
Q ss_pred cccccceeeecccccCC
Q 006945 171 SKTMGTASLSLQNFISP 187 (624)
Q Consensus 171 sKllG~~sisw~dLL~~ 187 (624)
-.+||.+.|++++|+..
T Consensus 76 dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 76 DDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCEEEEEEEEHHHhhhh
Confidence 67999999999999977
No 88
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=95.08 E-value=0.17 Score=45.74 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=67.1
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCce--eeccC-cceEeeecCCceeEEEEEeec----cCcEEEEEEeeCCC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDI--FFNAK-QKLTILSKSGMKQVASFQCEA----TGELLFELVSHSTS 163 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~--~~k~~-~~l~i~Se~~wkq~~~fqCE~----TgeLvlELr~~~~~ 163 (624)
+.|.|+..+||+.... ...+-||++... |+. ..+.+ +-..-..+|.|+....|.... ..-|.|+|.-+..
T Consensus 15 L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~-~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~- 92 (133)
T cd08384 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLK-PDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDI- 92 (133)
T ss_pred EEEEEEEEcCCCCcCCCCCCCcEEEEEEE-cCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCC-
Confidence 6788999999986532 457889988865 221 11112 223344778999988887752 4567788776654
Q ss_pred ccccCCCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 164 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
.....+||.+.|++.+. .-..+.|+++.++
T Consensus 93 ----~~~~~~lG~~~i~l~~~-----~~~~~~W~~~l~~ 122 (133)
T cd08384 93 ----GKSNDYIGGLQLGINAK-----GERLRHWLDCLKN 122 (133)
T ss_pred ----CCCccEEEEEEEecCCC-----CchHHHHHHHHhC
Confidence 45678999999999752 1245788887764
No 89
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=95.02 E-value=0.14 Score=47.19 Aligned_cols=99 Identities=18% Similarity=0.315 Sum_probs=66.8
Q ss_pred EEEEEEeecCcCCC-cCCCCceEEEEEccCCce-----eeccCcceEeeecCCceeEEEEEee----ccCcEEEEEEeeC
Q 006945 92 VFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDI-----FFNAKQKLTILSKSGMKQVASFQCE----ATGELLFELVSHS 161 (624)
Q Consensus 92 V~leIv~~knlp~~-~k~~~~lFVrl~k~q~d~-----~~k~~~~l~i~Se~~wkq~~~fqCE----~TgeLvlELr~~~ 161 (624)
+.|.|+..+||+.. .+...+.||++... ||. ..+. +-..-..+|.|.....|+=. ....|.|.|..++
T Consensus 16 L~V~V~~arnL~~~~~~~~~dpyVKv~Ll-p~~~~~~~~~kT-~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~ 93 (124)
T cd08680 16 LVISVEQLRNLSALSIPENSKVYVRVALL-PCSSSTSCLFRT-KALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVG 93 (124)
T ss_pred EEEEEeEecCCcccccCCCCCeEEEEEEc-cCCCCCCceEEc-CccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCC
Confidence 56788899999865 33457999999865 443 2222 22223477889887777654 3556666666654
Q ss_pred CCccccCCCcccccceeeecccccCCCCcceEeEEEEe
Q 006945 162 TSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 199 (624)
Q Consensus 162 ~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL 199 (624)
. ++...+||.+.|+|.|+-.... -..+|++|
T Consensus 94 ~-----~~~~~~lG~~~i~L~~~~~~~~--~~~~Wy~l 124 (124)
T cd08680 94 P-----DQQEECLGGAQISLADFESSEE--MSTKWYNL 124 (124)
T ss_pred C-----CCceeEEEEEEEEhhhccCCCc--cccccccC
Confidence 3 5678899999999999943322 25788875
No 90
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=94.94 E-value=0.16 Score=46.40 Aligned_cols=93 Identities=20% Similarity=0.169 Sum_probs=61.6
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCcee----eccCcceEeeecCCceeEEEEEeec------cCcEEEEEEee
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIF----FNAKQKLTILSKSGMKQVASFQCEA------TGELLFELVSH 160 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~----~k~~~~l~i~Se~~wkq~~~fqCE~------TgeLvlELr~~ 160 (624)
+.|.|+..+||+.... ...+-||+++....+.+ ..-.+-+.-..++.|.....|.... ..-|.|+|+-+
T Consensus 18 L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~ 97 (133)
T cd04009 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDY 97 (133)
T ss_pred EEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEec
Confidence 6677899999986522 34788999877533321 1111222333578998877777652 23567777666
Q ss_pred CCCccccCCCcccccceeeecccccCCCC
Q 006945 161 STSKIPMTGASKTMGTASLSLQNFISPIS 189 (624)
Q Consensus 161 ~~~~L~~~r~sKllG~~sisw~dLL~~~s 189 (624)
.. +++..+||.+.|++++|+....
T Consensus 98 d~-----~~~d~~iG~~~i~l~~l~~~~~ 121 (133)
T cd04009 98 DL-----LGSNDFEGEAFLPLNDIPGVED 121 (133)
T ss_pred CC-----CCCCcEeEEEEEeHHHCCcccc
Confidence 54 4567899999999999995533
No 91
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.27 E-value=0.38 Score=46.05 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=67.3
Q ss_pred EEEEEEeecCcCCCcC---------------CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee---ccCcE
Q 006945 92 VFVEIVAVKNLPEDHK---------------DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE---ATGEL 153 (624)
Q Consensus 92 V~leIv~~knlp~~~k---------------~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE---~TgeL 153 (624)
+.|.|.++++||.... ...+-||+++-. .. ..+ .+-+....++.|.+...|+.- ...-|
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~-g~-~~k-T~v~~~t~nPvWNE~f~f~v~~p~~~~~l 78 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA-GQ-KVK-TSVKKNSYNPEWNEQIVFPEMFPPLCERI 78 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC-CE-eee-cceEcCCCCCCcceEEEEEeeCCCcCCEE
Confidence 4577888899886531 235778887643 22 122 233444578999999999742 35688
Q ss_pred EEEEEeeCCCccccCCCcccccceeeecccccCCCC----cceEeEEEEee
Q 006945 154 LFELVSHSTSKIPMTGASKTMGTASLSLQNFISPIS----KLAVEQWFDLV 200 (624)
Q Consensus 154 vlELr~~~~~~L~~~r~sKllG~~sisw~dLL~~~s----~LS~Ekw~eL~ 200 (624)
+|+|+-++. ..+..+||.++|++++|+...- ++--.+|+.|.
T Consensus 79 ~~~v~D~d~-----~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 79 KIQIRDWDR-----VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEEEECCC-----CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 899988877 4477899999999999987631 12234555554
No 92
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=93.92 E-value=1.7 Score=42.17 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=79.0
Q ss_pred EEEEEEeecC--cCCCc-CCCCceEEEEEccCC-ceeecc-CcceEeeecCCceeEEEEEee-c---------cCcEEEE
Q 006945 92 VFVEIVAVKN--LPEDH-KDKGDLFVFFSKSQP-DIFFNA-KQKLTILSKSGMKQVASFQCE-A---------TGELLFE 156 (624)
Q Consensus 92 V~leIv~~kn--lp~~~-k~~~~lFVrl~k~q~-d~~~k~-~~~l~i~Se~~wkq~~~fqCE-~---------TgeLvlE 156 (624)
..|.|+.++| +|..- ....+-||.|.-..| +.--+. .+-+.-+.+|.|+....|.=. . .+.|.||
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3456666666 56543 234799999976434 211111 133444567889876665543 1 3568888
Q ss_pred EEeeCCCccccCCCcccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCe--eEEEEEeeecCCccceee
Q 006945 157 LVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPI--SLRIAVSFTIPTLAPHLL 229 (624)
Q Consensus 157 Lr~~~~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pi--sLRVa~SiTPPvqAPYlL 229 (624)
|..+.. + +|+-++||.+.|.|++|... .. .+.|++|... .+|+ .|.|.|-+-.|...-.+-
T Consensus 84 V~d~~~-f---~~~D~~iG~~~i~L~~l~~~-~~--~~~~~~L~~~-----~k~~Gg~l~v~ir~r~p~~~~~~~ 146 (155)
T cd08690 84 VYHKGG-F---LRSDKLLGTAQVKLEPLETK-CE--IHESVDLMDG-----RKATGGKLEVKVRLREPLTGKQLE 146 (155)
T ss_pred EEeCCC-c---ccCCCeeEEEEEEccccccc-Cc--ceEEEEhhhC-----CCCcCCEEEEEEEecCCCccceee
Confidence 876664 2 37889999999999999755 32 5679999854 3444 455555566676655543
No 93
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=93.86 E-value=0.68 Score=41.30 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=65.4
Q ss_pred EeecCcCCCc-CCCCceEEEEEccCCc--ee--eccCcceEeeecCCceeEEEEEe--eccCcEEEEEEeeCCCccccCC
Q 006945 97 VAVKNLPEDH-KDKGDLFVFFSKSQPD--IF--FNAKQKLTILSKSGMKQVASFQC--EATGELLFELVSHSTSKIPMTG 169 (624)
Q Consensus 97 v~~knlp~~~-k~~~~lFVrl~k~q~d--~~--~k~~~~l~i~Se~~wkq~~~fqC--E~TgeLvlELr~~~~~~L~~~r 169 (624)
+..++|+... ....+-||++...... .. ..-.+-+....+|.|.....|.- +....|.||+.-+...- ..+.
T Consensus 7 i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~-~~~~ 85 (120)
T cd04048 7 ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS-KDLS 85 (120)
T ss_pred EEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc-CCCC
Confidence 4467776442 2336779988776443 11 11223344447889988666643 35678999998887621 0134
Q ss_pred CcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 170 ASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 170 ~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
...+||.+.|++++|+.. . ....|++|++.
T Consensus 86 ~~d~iG~~~i~l~~l~~~-~--~~~~~~~l~~~ 115 (120)
T cd04048 86 DHDFLGEAECTLGEIVSS-P--GQKLTLPLKGG 115 (120)
T ss_pred CCcEEEEEEEEHHHHhcC-C--CcEEEEEccCC
Confidence 667899999999999965 2 35578888664
No 94
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=93.39 E-value=0.53 Score=42.10 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=59.3
Q ss_pred EEEEEEeecCcCCCcC-----CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEe-ecc--CcEEEEEEeeCCC
Q 006945 92 VFVEIVAVKNLPEDHK-----DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQC-EAT--GELLFELVSHSTS 163 (624)
Q Consensus 92 V~leIv~~knlp~~~k-----~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqC-E~T--geLvlELr~~~~~ 163 (624)
|+|.|+..+|||.... ...+=||.+... ...++ .+-+.-..++-|.+...|+= +.. ..|.|+|+-++.
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~--~~~~k-T~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~- 78 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG--RRVFR-TSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK- 78 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEEC--CEeEe-eeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC-
Confidence 6788999999996421 124668888753 12222 22233346789998777763 332 356777877765
Q ss_pred ccccCCCcccccceeeecccccCC
Q 006945 164 KIPMTGASKTMGTASLSLQNFISP 187 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~ 187 (624)
+....+||.++|+|++|+..
T Consensus 79 ----~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 79 ----FSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred ----CCCCcceEEEEEEHHHHHhh
Confidence 45678999999999999966
No 95
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.07 E-value=0.74 Score=41.73 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=60.9
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-c-cCcEEEEEEeeCCCccccC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~-TgeLvlELr~~~~~~L~~~ 168 (624)
|.|.|+..+||+.... ...+-||+++...-. ...-++.+.-..++.|.+...|++. + ...|.|+|+-++. +
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~-~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~-----~ 75 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKK-INDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDL-----L 75 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCee-ccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCC-----C
Confidence 5678899999986532 446789988764221 1111122333467899988888886 3 5678888887765 3
Q ss_pred CCcccccceeeecccccC
Q 006945 169 GASKTMGTASLSLQNFIS 186 (624)
Q Consensus 169 r~sKllG~~sisw~dLL~ 186 (624)
.+..+||.+.|++++...
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 466899999999987763
No 96
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=92.84 E-value=0.49 Score=61.13 Aligned_cols=123 Identities=16% Similarity=0.222 Sum_probs=83.6
Q ss_pred ccccccCCceEEEEEEEEEeecCcCCC-cCCCCceEEEEEcc-CCceeeccCcceEeeecCCceeEEEEEee-cc-Cc-E
Q 006945 79 QKIINIPDLKIVEVFVEIVAVKNLPED-HKDKGDLFVFFSKS-QPDIFFNAKQKLTILSKSGMKQVASFQCE-AT-GE-L 153 (624)
Q Consensus 79 ~k~~sL~~r~vvEV~leIv~~knlp~~-~k~~~~lFVrl~k~-q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~T-ge-L 153 (624)
++--+|.+-.+=-+.|-+++-+||+.. +. .+=||+++-- ||.+- .+-+.-..+|.|++..+|.++ |. .. |
T Consensus 1969 ~~~~~~~~~~~G~L~V~V~~a~nl~~~~~~--sdPyv~l~~g~~~~~k---Tkvvk~~~nP~Wne~f~~~~~~p~~~~~l 2043 (2102)
T PLN03200 1969 ERAESLLQCLPGSLTVTIKRGNNLKQSMGN--TNAFCKLTLGNGPPRQ---TKVVSHSSSPEWKEGFTWAFDSPPKGQKL 2043 (2102)
T ss_pred HHHHHHHhhCCcceEEEEeeccccccccCC--CCCeEEEEECCCCccc---ccccCCCCCCCcccceeeeecCCCCCCce
Confidence 333344444444467888899999843 33 7888888665 55441 244555578899999999999 54 34 7
Q ss_pred EEEEEeeCCCccccCCCcccccceeeecccccCCCCcceEeEEEEeecCCCCC-CCCCeeEEE
Q 006945 154 LFELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNV-SSKPISLRI 215 (624)
Q Consensus 154 vlELr~~~~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~-ss~pisLRV 215 (624)
.|||..++. |.+. .||.++|+++++.. .-....||+|++++... .+..+++.+
T Consensus 2044 ~iev~d~d~-----f~kd-~~G~~~i~l~~vv~---~~~~~~~~~L~~~~~k~G~~~~~~~e~ 2097 (2102)
T PLN03200 2044 HISCKSKNT-----FGKS-SLGKVTIQIDRVVM---EGTYSGEYSLNPESNKDGSSRTLEIEF 2097 (2102)
T ss_pred EEEEEecCc-----cCCC-CCceEEEEHHHHhc---CceeeeeeecCcccccCCCcceEEEEE
Confidence 888888773 5444 79999999999994 45689999999864322 234455443
No 97
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=92.34 E-value=1.2 Score=42.10 Aligned_cols=101 Identities=18% Similarity=0.301 Sum_probs=64.2
Q ss_pred EEEEEEeecCcCCCc---CCCCceEEEEEccCCceee-ccCcc-eEeeecCCceeEEEEEee----ccCcEEEEEEeeCC
Q 006945 92 VFVEIVAVKNLPEDH---KDKGDLFVFFSKSQPDIFF-NAKQK-LTILSKSGMKQVASFQCE----ATGELLFELVSHST 162 (624)
Q Consensus 92 V~leIv~~knlp~~~---k~~~~lFVrl~k~q~d~~~-k~~~~-l~i~Se~~wkq~~~fqCE----~TgeLvlELr~~~~ 162 (624)
+.|.|+..+||+... ....+-||.++...-...+ +-+.+ ..-..+|-|...-.|.=. ...-|.|+|..++.
T Consensus 17 L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~ 96 (138)
T cd08407 17 LLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS 96 (138)
T ss_pred EEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC
Confidence 557788899998653 1346899988866222221 22222 223366789887666653 24568888888866
Q ss_pred CccccCCCcccccceeeec----------ccccCCCCcceEeEEEE
Q 006945 163 SKIPMTGASKTMGTASLSL----------QNFISPISKLAVEQWFD 198 (624)
Q Consensus 163 ~~L~~~r~sKllG~~sisw----------~dLL~~~s~LS~Ekw~e 198 (624)
+.+..+||.++|.+ +|++.. |-..+++|=.
T Consensus 97 -----~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~-p~~~va~WH~ 136 (138)
T cd08407 97 -----PGQSLPLGRCSLGLHTSGTERQHWEEMLDN-PRRQIAMWHQ 136 (138)
T ss_pred -----CcCcceeceEEecCcCCCcHHHHHHHHHhC-CCCchhEEEE
Confidence 56788999999985 455544 4555555544
No 98
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=92.09 E-value=1.1 Score=41.14 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=59.9
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeec--cCcceEeeecCCceeEEEEEee--ccCc--EEEEEEeeCCCc
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFN--AKQKLTILSKSGMKQVASFQCE--ATGE--LLFELVSHSTSK 164 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k--~~~~l~i~Se~~wkq~~~fqCE--~Tge--LvlELr~~~~~~ 164 (624)
+.|.|+..+||+.... ...+-||.++.......+. -.+-..-..+|.|.....|.-. ...+ |.|+|..++.
T Consensus 16 L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~-- 93 (135)
T cd08410 16 LNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV-- 93 (135)
T ss_pred EEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC--
Confidence 6677899999986532 3478899887642111111 1122333467899987777764 2333 6677776654
Q ss_pred cccCCCcccccceeeecccccCCCCcceEeEEEEeecC
Q 006945 165 IPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPR 202 (624)
Q Consensus 165 L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~ 202 (624)
.++..+||.+.|....+.. +. .+.|.+|.++
T Consensus 94 ---~~~~~~iG~~~l~~~~~~~--~~--~~~W~~l~~~ 124 (135)
T cd08410 94 ---KSSNDFIGRIVIGQYSSGP--SE--TNHWRRMLNS 124 (135)
T ss_pred ---CCCCcEEEEEEEcCccCCc--hH--HHHHHHHHhC
Confidence 4678889987765432221 11 2556666554
No 99
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=92.00 E-value=1 Score=41.90 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=66.7
Q ss_pred EEEEEEEeecCcCCCcCCCCceEEEEEccCCceeeccCc-ceEeeecCCceeEEEEEee----ccCcEEEEEEeeCCCcc
Q 006945 91 EVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQ-KLTILSKSGMKQVASFQCE----ATGELLFELVSHSTSKI 165 (624)
Q Consensus 91 EV~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~-~l~i~Se~~wkq~~~fqCE----~TgeLvlELr~~~~~~L 165 (624)
++.|-|+.++||+.... .+=||.+....++..-+.+. -..-..+|.|.....|.=. +.+-|.|.|+-++.
T Consensus 15 ~L~V~vikA~~L~~~g~--sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr--- 89 (118)
T cd08677 15 ELHVNILEAENISVDAG--CECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR--- 89 (118)
T ss_pred EEEEEEEEecCCCCCCC--CCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC---
Confidence 46688888999994433 78899888764444222222 2222367889876666432 56778888888876
Q ss_pred ccCCCcccccceeeecccccCCCCcceEeEEEEe
Q 006945 166 PMTGASKTMGTASLSLQNFISPISKLAVEQWFDL 199 (624)
Q Consensus 166 ~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL 199 (624)
+.+..+||.+.+++.++-- ....|.|-||
T Consensus 90 --fs~~d~IG~v~l~l~~~~~---~~~~~~W~~~ 118 (118)
T cd08677 90 --FSRHSTLGELRLKLADVSM---MLGAAQWVDL 118 (118)
T ss_pred --CCCCceEEEEEEccccccC---CccccchhcC
Confidence 6678899999999998621 2346678764
No 100
>COG4278 Uncharacterized conserved protein [Function unknown]
Probab=91.96 E-value=0.22 Score=51.57 Aligned_cols=7 Identities=57% Similarity=1.013 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 006945 471 GCGSGCG 477 (624)
Q Consensus 471 g~~~~c~ 477 (624)
+|+++|+
T Consensus 216 ~~~sgcg 222 (269)
T COG4278 216 KWMSGCG 222 (269)
T ss_pred Ccccccc
Confidence 3444443
No 101
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=91.62 E-value=4.4 Score=37.09 Aligned_cols=119 Identities=20% Similarity=0.311 Sum_probs=71.1
Q ss_pred eEEEEEEEEEeecCcCCCcCCCCceEEEEEccCCceee--ccCcceEee-ecCCceeEEEEEee----------ccCcEE
Q 006945 88 KIVEVFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFF--NAKQKLTIL-SKSGMKQVASFQCE----------ATGELL 154 (624)
Q Consensus 88 ~vvEV~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~--k~~~~l~i~-Se~~wkq~~~fqCE----------~TgeLv 154 (624)
.=.++.|.|..+.++|.. ...+||+.+.- +.-. ....+..+. -...|.+...+.|- -.+.+.
T Consensus 5 ~kf~~~l~i~~l~~~p~~---~~~v~v~wkr~--~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPSS---NGKVFVKWKRG--DKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred eeEEEEEEEEEeECcCCC---CCEEEEEEEEC--CCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 346788999999999982 36889877332 3321 111222222 22367665555552 245677
Q ss_pred EEEEeeCCCccccCCCcccccceeeecccccCCCCcceEeEEEEeecCCCCCCCCCeeEEEEEeeec
Q 006945 155 FELVSHSTSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTI 221 (624)
Q Consensus 155 lELr~~~~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~ss~pisLRVa~SiTP 221 (624)
|.|......- ++ +.+|++.|.|.|+.+. ..=....-+.|.+. ....-.|+|-+++.+
T Consensus 80 ~~v~~~~~~~----~k-~~lG~~~inLaey~~~-~~~~~~~~~~l~~~----~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 80 FSVFEVDGSG----KK-KVLGKVSINLAEYANE-DEEPITVRLLLKKC----KKSNATLSISISLSE 136 (143)
T ss_pred EEEEEecCCC----cc-ceEEEEEEEHHHhhCc-CCCcEEEEEeCccC----CCCCcEEEEEEEEEE
Confidence 7777774311 22 7999999999999987 33345555666654 123356777766654
No 102
>PLN02352 phospholipase D epsilon
Probab=90.25 E-value=2.5 Score=50.30 Aligned_cols=107 Identities=12% Similarity=0.278 Sum_probs=79.1
Q ss_pred CceEEEEEccCCceeeccCcceEeeecCCceeEEEEEee-cc-CcEEEEEEeeCCCccccCCCcccccceeeecccccCC
Q 006945 110 GDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCE-AT-GELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISP 187 (624)
Q Consensus 110 ~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~T-geLvlELr~~~~~~L~~~r~sKllG~~sisw~dLL~~ 187 (624)
+++||....-+.-. -.+ +...++.|.+..++||- ++ -+++|.|.- .+.+||.+.|+-++|+.-
T Consensus 36 ~~~y~tv~~~~~~v-~rt----~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----------~~~~ig~~~~p~~~~~~g 100 (758)
T PLN02352 36 KATYVTIKIGNKKV-AKT----SHEYDRVWNQTFQILCAHPLDSTITITLKT----------KCSILGRFHIQAHQIVTE 100 (758)
T ss_pred CCceEEEEeCCcEE-ecC----CCCCCCccccceeEEeeeecCCcEEEEEec----------CCeEEEEEEEEHHHhhCC
Confidence 37777665553221 111 33457899999999998 66 689888854 478999999999999975
Q ss_pred CCcceEeEEEEeecCCCCCCCCCeeEEEEEeeecCCccceeeeeeec
Q 006945 188 ISKLAVEQWFDLVPRSGNVSSKPISLRIAVSFTIPTLAPHLLRMVRS 234 (624)
Q Consensus 188 ~s~LS~Ekw~eL~~~~g~~ss~pisLRVa~SiTPPvqAPYlLk~V~d 234 (624)
... +++||+|...++.-- ++..|||.+-|||=.+-|+--+=|.+
T Consensus 101 -~~~-~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~g~~~ 144 (758)
T PLN02352 101 -ASF-INGFFPLIMENGKPN-PELKLRFMLWFRPAELEPTWCKILEN 144 (758)
T ss_pred -Ccc-cceEEEcccCCCCCC-CCCEEEEEEEEEEhhhCcchhhcccC
Confidence 333 999999997765433 44799999999999999886666533
No 103
>COG4278 Uncharacterized conserved protein [Function unknown]
Probab=89.15 E-value=0.55 Score=48.78 Aligned_cols=6 Identities=100% Similarity=2.738 Sum_probs=2.5
Q ss_pred CCCCCC
Q 006945 541 CGGGCG 546 (624)
Q Consensus 541 cg~~~g 546 (624)
||||||
T Consensus 254 CgggcG 259 (269)
T COG4278 254 CGGGCG 259 (269)
T ss_pred cCCCCC
Confidence 444444
No 104
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=83.17 E-value=9 Score=36.57 Aligned_cols=103 Identities=21% Similarity=0.245 Sum_probs=59.4
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceee-ccCcceEeee--cCCceeEEEEEee-ccCcEEEEEEeeCCCccc
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFF-NAKQKLTILS--KSGMKQVASFQCE-ATGELLFELVSHSTSKIP 166 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~-k~~~~l~i~S--e~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~ 166 (624)
+-|.|+..+|||.... ...+-||.+....-+..+ +-+.++.--| .+-|+....|.-. +-.++.|.|...+...
T Consensus 16 LtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~-- 93 (135)
T cd08692 16 IQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS-- 93 (135)
T ss_pred EEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC--
Confidence 5577888999987532 223569988777444332 2333332223 3568887777665 2224445544444432
Q ss_pred cCCCcccccceeeecccccCCCCcceEeEEEEeec
Q 006945 167 MTGASKTMGTASLSLQNFISPISKLAVEQWFDLVP 201 (624)
Q Consensus 167 ~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~ 201 (624)
.++..+||.++|..+..... .+|-|.|...
T Consensus 94 -~~~n~~IG~v~lG~~~~~~~----~~~hW~~m~~ 123 (135)
T cd08692 94 -VRRKHFLGQVWISSDSSSSE----AVEQWKDTIA 123 (135)
T ss_pred -CcCCceEEEEEECCccCCch----hhhhHHHHHh
Confidence 46788999999887653321 2466666543
No 105
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=82.96 E-value=3.1 Score=49.03 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=77.0
Q ss_pred EEEEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEeeecCCceeEE-----EEEee-c--cCcEEEEEEee
Q 006945 90 VEVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVA-----SFQCE-A--TGELLFELVSH 160 (624)
Q Consensus 90 vEV~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~-----~fqCE-~--TgeLvlELr~~ 160 (624)
-.+++-|+..||||...- .+.+ |....|+|.+..+-|.+-|+.+. -|||| | -.-|.|=|.-.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D---------~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~ 75 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRD---------CYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDR 75 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcC---------cceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEecc
Confidence 357899999999997722 2333 34556666666666777887743 57888 4 34455544433
Q ss_pred CCCccccCCCcccccceeeecccccCCCCcceEeEEEEeecCCCCCC-CCCeeEEEEEeeecCCcc
Q 006945 161 STSKIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRSGNVS-SKPISLRIAVSFTIPTLA 225 (624)
Q Consensus 161 ~~~~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~g~~s-s~pisLRVa~SiTPPvqA 225 (624)
+ ++.-+.||++.|+=+||... | -.+.||.|+|-+...- +-- +++.+-+|+-+|+
T Consensus 76 d------~~~D~~IGKvai~re~l~~~-~--~~d~W~~L~~VD~dsEVQG~--v~l~l~~~e~~~~ 130 (800)
T KOG2059|consen 76 D------LKRDDIIGKVAIKREDLHMY-P--GKDTWFSLQPVDPDSEVQGK--VHLELALTEAIQS 130 (800)
T ss_pred c------cccccccceeeeeHHHHhhC-C--CCccceeccccCCChhhcee--EEEEEEeccccCC
Confidence 3 37789999999999999976 4 6789999998654322 222 4444455555554
No 106
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=78.93 E-value=1.2 Score=44.02 Aligned_cols=52 Identities=10% Similarity=-0.013 Sum_probs=43.7
Q ss_pred CcCCcceeec-cCcceeeecccccc---ccccccccccccccceeeeeeCCCCCcccee
Q 006945 324 SKEGHLFELL-GNRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKAI 378 (624)
Q Consensus 324 s~dg~lfElS-~~kPl~fisGr~m~---fE~~~ls~~~sgd~FVT~V~~spE~pYGea~ 378 (624)
..++.+|+.+ +..|+.|..|.... ||.. +..+..++.+ .|.++|+.+||++.
T Consensus 100 ~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~-L~~Mk~Ge~~--~~~iP~~~AYG~~g 155 (177)
T TIGR03516 100 ALDGDVIYSEEELGPQTYKVDQQDLFSGLRDG-LKLMKEGETA--TFLFPSHKAYGYYG 155 (177)
T ss_pred eCCCCEEEeCCCCCCEEEEeCCcchhHHHHHH-HcCCCCCCEE--EEEECHHHcCCCCC
Confidence 3467778877 67799999987655 8777 8999999999 99999999999985
No 107
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.23 E-value=32 Score=38.34 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=73.9
Q ss_pred EEEEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEee-ecCCceeEEEEEee----ccCcEEEEEEeeCCC
Q 006945 90 VEVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTIL-SKSGMKQVASFQCE----ATGELLFELVSHSTS 163 (624)
Q Consensus 90 vEV~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~-Se~~wkq~~~fqCE----~TgeLvlELr~~~~~ 163 (624)
.++.|.|+..+|||...+ ...+=||++... ||.--+.+.++.-- .++-|.....|+-. +++.|.|.|.-++.
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~ll-Pdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr- 244 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLL-PDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR- 244 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEc-CCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC-
Confidence 456788888999997754 336889988777 67622222222222 34678776666632 68888888888777
Q ss_pred ccccCCCcccccceeeecccccCCCCcceEeEEEEeecCC
Q 006945 164 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLVPRS 203 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~~~~ 203 (624)
|..-..||.++++|.++-.. .+ .+.|.+|++..
T Consensus 245 ----fsr~~~iGev~~~l~~~~~~-~~--~~~w~~l~~~~ 277 (421)
T KOG1028|consen 245 ----FSRHDFIGEVILPLGEVDLL-ST--TLFWKDLQPSS 277 (421)
T ss_pred ----cccccEEEEEEecCcccccc-cc--ceeeecccccc
Confidence 56778999999998877755 22 78999999863
No 108
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=76.47 E-value=1.5 Score=37.44 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=43.9
Q ss_pred CCcceeec--cCcceeeecccccc---ccccccccccccccceeeeeeCCCCCcccee
Q 006945 326 EGHLFELL--GNRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKAI 378 (624)
Q Consensus 326 dg~lfElS--~~kPl~fisGr~m~---fE~~~ls~~~sgd~FVT~V~~spE~pYGea~ 378 (624)
++..|+.+ .+.|++|..|.... ||.. +..+..++.. .|.++|+.+||+..
T Consensus 21 ~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~a-l~~m~~Ge~~--~~~vp~~~ayg~~~ 75 (94)
T PF00254_consen 21 DGKVFDSSYQEGEPFEFRLGSGQVIPGLEEA-LIGMKVGEKR--EFYVPPELAYGEKG 75 (94)
T ss_dssp TSEEEEETTTTTSEEEEETTSSSSSHHHHHH-HTTSBTTEEE--EEEEEGGGTTTTTT
T ss_pred CCcEEEEeeecCcceeeeeccCccccchhhh-cccccCCCEe--eeEeCChhhcCccc
Confidence 67788888 78899999998776 8888 9999999988 99999999999865
No 109
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=76.35 E-value=22 Score=33.76 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=51.5
Q ss_pred EEEEEEEeecCcCCCc-----CCCCceEEEEEccCCceeeccCcceEeeecC-----CceeEEEEEe-------------
Q 006945 91 EVFVEIVAVKNLPEDH-----KDKGDLFVFFSKSQPDIFFNAKQKLTILSKS-----GMKQVASFQC------------- 147 (624)
Q Consensus 91 EV~leIv~~knlp~~~-----k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~-----~wkq~~~fqC------------- 147 (624)
|+.|-|..++|++... +++.++||..... ++...+.+..+---|-. +|.-+..|.-
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~-~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLD-GLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEc-cCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 5778888899866432 1358899977644 22111111112212222 3444444444
Q ss_pred --------e--ccCcEEEEEEeeCCCccccCCCcccccceeeecccccCC
Q 006945 148 --------E--ATGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFISP 187 (624)
Q Consensus 148 --------E--~TgeLvlELr~~~~~~L~~~r~sKllG~~sisw~dLL~~ 187 (624)
| ...-|+|++.-++. +++-..||.+.|+|+.|.++
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~-----~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDK-----FSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcc-----cCCCCcceEEEEEhhhcccc
Confidence 3 23445555555555 56677888888888888766
No 110
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=70.90 E-value=4.6 Score=37.27 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=41.9
Q ss_pred CCcceeec--cCcceeeecccccc---ccccccccccccccceeeeeeCCCCCcccee
Q 006945 326 EGHLFELL--GNRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKAI 378 (624)
Q Consensus 326 dg~lfElS--~~kPl~fisGr~m~---fE~~~ls~~~sgd~FVT~V~~spE~pYGea~ 378 (624)
++.-|+.+ .++||+|--|.+.. |++- ...+..++.+ ..+++|+.+||..-
T Consensus 33 dG~kfDSs~dr~kPfkf~IGkgeVIkGwdeg-v~qmsvGeka--kLti~pd~aYG~~G 87 (108)
T KOG0544|consen 33 DGKKFDSSRDRGKPFKFKIGKGEVIKGWDEG-VAQMSVGEKA--KLTISPDYAYGPRG 87 (108)
T ss_pred CCcEeecccccCCCeeEEecCcceeechhhc-chhccccccc--eeeeccccccCCCC
Confidence 66778888 68999999998877 7766 7777778888 99999999999864
No 111
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=56.59 E-value=70 Score=30.06 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=56.1
Q ss_pred EEEEEeecCcCCCcCCCCceEEEEEcc-CCceeeccC-cceEeeecCCceeEEEEEeeccCcEEEEEEeeCCCc--cccC
Q 006945 93 FVEIVAVKNLPEDHKDKGDLFVFFSKS-QPDIFFNAK-QKLTILSKSGMKQVASFQCEATGELLFELVSHSTSK--IPMT 168 (624)
Q Consensus 93 ~leIv~~knlp~~~k~~~~lFVrl~k~-q~d~~~k~~-~~l~i~Se~~wkq~~~fqCE~TgeLvlELr~~~~~~--L~~~ 168 (624)
.|.|+.++||+.. .+.||.|... ..+.+-+.+ +.+.-..+|-|.....|+-+.+..|.|.+.-..... +...
T Consensus 2 ~V~V~~A~~L~~~----sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~~~d~~ 77 (118)
T cd08686 2 NVIVHSAQGFKQS----ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEGSQTLRILCYEKCYSKVKLDGE 77 (118)
T ss_pred EEEEEeCCCCCCC----CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCCCCEEEEEEEEccccccccccc
Confidence 5778899999743 6889988443 112122222 334445789999988888778888888888764221 2235
Q ss_pred CCcccccceeeec
Q 006945 169 GASKTMGTASLSL 181 (624)
Q Consensus 169 r~sKllG~~sisw 181 (624)
.+-+++|++.|.|
T Consensus 78 ~~d~~~G~g~i~L 90 (118)
T cd08686 78 GTDAIMGKGQIQL 90 (118)
T ss_pred CcccEEEEEEEEE
Confidence 6778997776665
No 112
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=56.14 E-value=20 Score=34.97 Aligned_cols=49 Identities=16% Similarity=0.451 Sum_probs=35.0
Q ss_pred ccCcEEEEEEeeCCCccc-----cCCCcccccceeeecccccCCCCcceEeEEEEe
Q 006945 149 ATGELLFELVSHSTSKIP-----MTGASKTMGTASLSLQNFISPISKLAVEQWFDL 199 (624)
Q Consensus 149 ~TgeLvlELr~~~~~~L~-----~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL 199 (624)
...|++|||.-..+.... ..-.--+||++.|++.|||...+ =++.||++
T Consensus 90 e~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rs--GitGW~pi 143 (143)
T cd08683 90 ESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRS--GITGWYPI 143 (143)
T ss_pred hcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhccc--CccccccC
Confidence 578999999877665531 12344589999999999997633 35678763
No 113
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.03 E-value=60 Score=36.28 Aligned_cols=106 Identities=20% Similarity=0.307 Sum_probs=64.3
Q ss_pred EEEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcceEee---ecCCceeEEEEEe--eccCcEEEEEEeeCCCc
Q 006945 91 EVFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQKLTIL---SKSGMKQVASFQC--EATGELLFELVSHSTSK 164 (624)
Q Consensus 91 EV~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~l~i~---Se~~wkq~~~fqC--E~TgeLvlELr~~~~~~ 164 (624)
.+.|.|+..|||+..+. .-.+-||.....+.+.-++ +++-++. .++.|+-...|.+ |-..++.|+|-..+..-
T Consensus 299 ~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~-kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~ 377 (421)
T KOG1028|consen 299 RLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLS-KKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDT 377 (421)
T ss_pred eEEEEEEEecCCCcccCCCCCCccEEEEEecCCceee-eeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEccc
Confidence 36678888999986644 3355899888886663222 2222222 5667866555544 44555444444444333
Q ss_pred cccCCCcccccceee----------ecccccCCCCcceEeEEEEeec
Q 006945 165 IPMTGASKTMGTASL----------SLQNFISPISKLAVEQWFDLVP 201 (624)
Q Consensus 165 L~~~r~sKllG~~si----------sw~dLL~~~s~LS~Ekw~eL~~ 201 (624)
+....+||.+.+ =|++++.. |..-++.|..|.+
T Consensus 378 ---~~~~~~iG~~~lG~~~~~~~~~hW~~m~~~-p~~pv~~wh~l~~ 420 (421)
T KOG1028|consen 378 ---LGSNDLIGRCILGSDSTGEEVRHWQEMLNS-PRKPVAQWHSLRS 420 (421)
T ss_pred ---ccccceeeEEEecCCCCchHHHHHHHHHhC-ccCceeeeEeccc
Confidence 344457775554 37788877 7777888877653
No 114
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.86 E-value=45 Score=37.37 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=49.4
Q ss_pred cCCcCCcceeec-cCcceeeecccccc--ccccccccccccccceeeeeeCCCCCcccee------EEEeccCcceee--
Q 006945 322 KSSKEGHLFELL-GNRMINLFPGRKLD--YEHKHCQKQRSEEDFVTAIEFSPADPYGKAI------ALLDLKSGVIKV-- 390 (624)
Q Consensus 322 k~s~dg~lfElS-~~kPl~fisGr~m~--fE~~~ls~~~sgd~FVT~V~~spE~pYGea~------aLLdLk~~~feV-- 390 (624)
..+.++.++-+. -+.-+-+|-=..|+ |=.+ . ....|||.++|+|+.-|.--+ +|+.|..+.-..
T Consensus 288 ~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk--~---aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~~~~ 362 (398)
T KOG0771|consen 288 AVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK--E---AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTMQLH 362 (398)
T ss_pred EEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh--h---hheeeeeeEEEcCCcCcccccccCCceeEEEEeeccccccc
Confidence 456677777766 34444444444444 2122 2 234599999999999887655 788777643322
Q ss_pred -cc-eehhhHHHHHHHHHHhhh
Q 006945 391 -KE-EWFLLLGIISAFILSDAL 410 (624)
Q Consensus 391 -d~-ew~vlp~ii~~f~~~~~~ 410 (624)
.+ .|-++.|+++-|+++-++
T Consensus 363 ~~~~~~~~~~~~~lL~~l~~I~ 384 (398)
T KOG0771|consen 363 RLPKRRKIPAWLALLFVLSYII 384 (398)
T ss_pred ccccchhhhHHHHHHHHHHHHH
Confidence 22 355555656666555443
No 115
>PF14043 WVELL: WVELL protein
Probab=49.42 E-value=5.3 Score=35.05 Aligned_cols=31 Identities=39% Similarity=0.592 Sum_probs=24.5
Q ss_pred ccccccchhH--HHHHHhhCCccccccccccCCC
Q 006945 23 KLDTGFSGTT--KQWEETFGSRYPKAGAMYRGTA 54 (624)
Q Consensus 23 KL~~gFs~Tt--klWE~tFG~pYwKAGaMyRG~a 54 (624)
+|..+-..|= -|||+ |-..|.|||-.|+|..
T Consensus 17 ~Ls~~qArtWVElLWeD-FEsTyAKAG~~Y~G~e 49 (75)
T PF14043_consen 17 MLSYEQARTWVELLWED-FESTYAKAGRPYQGEE 49 (75)
T ss_pred CCCHHHHHHHHHHHHHH-HHHHHHHcCCccCcHH
Confidence 3666666663 58996 9999999999999974
No 116
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=48.23 E-value=11 Score=38.21 Aligned_cols=50 Identities=8% Similarity=0.123 Sum_probs=40.7
Q ss_pred CCcceeec--cCcceeeecccccc-ccccccccccccccceeeeeeCCCCCcccee
Q 006945 326 EGHLFELL--GNRMINLFPGRKLD-YEHKHCQKQRSEEDFVTAIEFSPADPYGKAI 378 (624)
Q Consensus 326 dg~lfElS--~~kPl~fisGr~m~-fE~~~ls~~~sgd~FVT~V~~spE~pYGea~ 378 (624)
++.+|+.+ .+.|+.|..+.-.. |+.. +..+..++.+ .|.++|+.+||++-
T Consensus 133 dG~vfdss~~~g~P~~f~l~~vipG~~ea-L~~M~~G~k~--~~~IP~~lAYG~~g 185 (206)
T PRK11570 133 DGTVFDSSVARGEPAEFPVNGVIPGWIEA-LTLMPVGSKW--ELTIPHELAYGERG 185 (206)
T ss_pred CCCEEEeccCCCCCeEEEeechhhHHHHH-HcCCCCCCEE--EEEECHHHcCCCCC
Confidence 67788888 56899988763222 8777 8899999999 99999999999974
No 117
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.66 E-value=20 Score=40.93 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=68.5
Q ss_pred EEEEEEEeecCcCCC-cCCCCceEEEEEccCCceee--c-cCcceEeeecCCceeEEEEEeec---cCcEEEEEEeeCCC
Q 006945 91 EVFVEIVAVKNLPED-HKDKGDLFVFFSKSQPDIFF--N-AKQKLTILSKSGMKQVASFQCEA---TGELLFELVSHSTS 163 (624)
Q Consensus 91 EV~leIv~~knlp~~-~k~~~~lFVrl~k~q~d~~~--k-~~~~l~i~Se~~wkq~~~fqCE~---TgeLvlELr~~~~~ 163 (624)
++-|.|++.+||.+. +..-++-||-+... ||.-- | -.+-+.-.-++.|.-+..|+=-| .+-|.+|+.--+-
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kli-PD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr- 258 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLI-PDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR- 258 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEec-cCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc-
Confidence 356788999996644 55567888877654 66322 2 12333344578998877776653 6788999876654
Q ss_pred ccccCCCcccccceeeecccccCCCCcceEeEEEEee
Q 006945 164 KIPMTGASKTMGTASLSLQNFISPISKLAVEQWFDLV 200 (624)
Q Consensus 164 ~L~~~r~sKllG~~sisw~dLL~~~s~LS~Ekw~eL~ 200 (624)
...--.+|..||.+++|++.. +.-|+-|-
T Consensus 259 ----TsRNDFMGslSFgisEl~K~p----~~GWyKlL 287 (683)
T KOG0696|consen 259 ----TSRNDFMGSLSFGISELQKAP----VDGWYKLL 287 (683)
T ss_pred ----cccccccceecccHHHHhhcc----hhhHHHHh
Confidence 224468999999999999873 66777765
No 118
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=40.98 E-value=82 Score=37.27 Aligned_cols=98 Identities=22% Similarity=0.364 Sum_probs=67.6
Q ss_pred EEEEEEeecCcCCCcC--CCCceEEEEE----ccCCceeeccCcceEeeecCCceeEEEEEee-c-----cCcEEEEEEe
Q 006945 92 VFVEIVAVKNLPEDHK--DKGDLFVFFS----KSQPDIFFNAKQKLTILSKSGMKQVASFQCE-A-----TGELLFELVS 159 (624)
Q Consensus 92 V~leIv~~knlp~~~k--~~~~lFVrl~----k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~-----TgeLvlELr~ 159 (624)
|-|-|+..++||+..+ |.-+-||-+. +..-|+|+| +-+++|..-| |.+| . .--|-+.|+-
T Consensus 5 l~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~k-------slnp~wnsdw-fkfevddadlqdeplqi~lld 76 (1169)
T KOG1031|consen 5 LGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLK-------SLNPQWNSDW-FKFEVDDADLQDEPLQIRLLD 76 (1169)
T ss_pred ceeEEEeccCCcccccccccchheeEEEecccceehhhhhh-------hcCCcccccc-eEEecChhhhccCCeeEEEec
Confidence 5688999999998855 6667787553 223344443 1357898766 6777 2 3345666777
Q ss_pred eCCCccccCCCcccccceeeecccccCCCCc-------ceEeEEEEeecC
Q 006945 160 HSTSKIPMTGASKTMGTASLSLQNFISPISK-------LAVEQWFDLVPR 202 (624)
Q Consensus 160 ~~~~~L~~~r~sKllG~~sisw~dLL~~~s~-------LS~Ekw~eL~~~ 202 (624)
|+. ...-.-||++-|+++-|+-+... -.+.-||++...
T Consensus 77 ~dt-----ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt 121 (1169)
T KOG1031|consen 77 HDT-----YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT 121 (1169)
T ss_pred ccc-----cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee
Confidence 776 44677899999999998866444 456789998875
No 119
>PLN02952 phosphoinositide phospholipase C
Probab=34.21 E-value=4.6e+02 Score=31.18 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=51.1
Q ss_pred ceEEEEEccC--CceeeccCcceEeeecCCceeEEEEEee-c-cCcEEEEEEeeCCCccccCCCcccccceeeecccccC
Q 006945 111 DLFVFFSKSQ--PDIFFNAKQKLTILSKSGMKQVASFQCE-A-TGELLFELVSHSTSKIPMTGASKTMGTASLSLQNFIS 186 (624)
Q Consensus 111 ~lFVrl~k~q--~d~~~k~~~~l~i~Se~~wkq~~~fqCE-~-TgeLvlELr~~~~~~L~~~r~sKllG~~sisw~dLL~ 186 (624)
+.||++...- .|...+-.+.+..--+|.|.....|+-. | .-=|.|+|+-++. +....++|...|++..|+.
T Consensus 498 D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~-----~~~ddfiGq~~lPv~~Lr~ 572 (599)
T PLN02952 498 DFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDM-----SEKDDFGGQTCLPVSELRP 572 (599)
T ss_pred CceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCC-----CCCCCeEEEEEcchhHhcC
Confidence 4578775552 2322111122221135789776666554 4 3335667777654 3467899999999999996
Q ss_pred CCCcceEeEEEEeecCCC
Q 006945 187 PISKLAVEQWFDLVPRSG 204 (624)
Q Consensus 187 ~~s~LS~Ekw~eL~~~~g 204 (624)
-- +|++|..+.+
T Consensus 573 Gy------R~VpL~~~~G 584 (599)
T PLN02952 573 GI------RSVPLHDKKG 584 (599)
T ss_pred Cc------eeEeCcCCCC
Confidence 63 7999987654
No 120
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.93 E-value=29 Score=35.70 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=40.7
Q ss_pred CCcceeec--cCcceeeecccccc--ccccccccccccccceeeeeeCCCCCcccee
Q 006945 326 EGHLFELL--GNRMINLFPGRKLD--YEHKHCQKQRSEEDFVTAIEFSPADPYGKAI 378 (624)
Q Consensus 326 dg~lfElS--~~kPl~fisGr~m~--fE~~~ls~~~sgd~FVT~V~~spE~pYGea~ 378 (624)
++.+|+.+ -++|+.|--| ... +..- +.....+... .+.++|+.+||++-
T Consensus 132 ~G~vFDsS~~rg~p~~f~l~-~vI~Gw~eg-l~~M~vG~k~--~l~IP~~laYG~~g 184 (205)
T COG0545 132 DGTVFDSSYDRGQPAEFPLG-GVIPGWDEG-LQGMKVGGKR--KLTIPPELAYGERG 184 (205)
T ss_pred CCCccccccccCCCceeecC-CeeehHHHH-HhhCCCCceE--EEEeCchhccCcCC
Confidence 78899998 7999998877 333 6555 7778888888 99999999999987
No 121
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=29.55 E-value=72 Score=26.89 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.6
Q ss_pred CCCCcee-EeecCCCceEEEEEEeC
Q 006945 251 QPAKSWT-RVIDETQSEVISLQMRD 274 (624)
Q Consensus 251 Q~~~~WT-rVvDh~g~E~fvlqiR~ 274 (624)
.++|.|. +|+|++|+++=++++++
T Consensus 41 ~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 41 DQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred CCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 4569995 79999999999998875
No 122
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=29.17 E-value=5.6e+02 Score=28.16 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=53.9
Q ss_pred ccCceeeeeeeecCceEEecCceeEEecCCcCCcceeec-cCcceeeeccccccccccccccccccccceeeeeeCCCC-
Q 006945 295 ESGETITLAEMVETGWSVMDCCWSLKKKSSKEGHLFELL-GNRMINLFPGRKLDYEHKHCQKQRSEEDFVTAIEFSPAD- 372 (624)
Q Consensus 295 ~s~ek~~laE~~e~~Wsl~~~~~~l~sk~s~dg~lfElS-~~kPl~fisGr~m~fE~~~ls~~~sgd~FVT~V~~spE~- 372 (624)
...-+++..|..++-| =.+++=.|++++.+|=.+ .++.+++-.=+..+.+.. +.-...+|+.++++|+-
T Consensus 135 ~g~ck~t~~~~~~~~W-----VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~----~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 135 LGVCKYTIHEDSHREW-----VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT----FIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred cccEEEEEecCCCcCc-----EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc----cccccccEEEEEECCCCC
Confidence 3334445566666566 233444566667766666 899998876555554332 33346799999999997
Q ss_pred --Ccccee---EEEeccCc
Q 006945 373 --PYGKAI---ALLDLKSG 386 (624)
Q Consensus 373 --pYGea~---aLLdLk~~ 386 (624)
+||..+ +|-||...
T Consensus 206 lcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred EEecCCCCceEEEEEccCC
Confidence 888888 67677543
No 123
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=27.11 E-value=2.6e+02 Score=28.12 Aligned_cols=87 Identities=16% Similarity=0.217 Sum_probs=57.2
Q ss_pred EEEEEEeecCcCCCcC-CCCceEEEEEccCCceeeccCcc-eEeeecCCceeEEEEEee-ccCcEEEEEEeeCCCccccC
Q 006945 92 VFVEIVAVKNLPEDHK-DKGDLFVFFSKSQPDIFFNAKQK-LTILSKSGMKQVASFQCE-ATGELLFELVSHSTSKIPMT 168 (624)
Q Consensus 92 V~leIv~~knlp~~~k-~~~~lFVrl~k~q~d~~~k~~~~-l~i~Se~~wkq~~~fqCE-~TgeLvlELr~~~~~~L~~~ 168 (624)
+++-+++.+||...-- ..++=||-+.--+-. ++.+ +.---++.|+....|.=. ++..|.+++.-++. |
T Consensus 8 L~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~----lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~-----f 78 (168)
T KOG1030|consen 8 LRVRVKRGKNLAIRDFLGSSDPYVVLELGNQK----LKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDT-----F 78 (168)
T ss_pred EEEEEEeecCeeeeccccCCCCeEEEEECCee----eeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCC-----C
Confidence 3456677777765422 235566655332111 1111 222256789987777776 88888888877776 7
Q ss_pred CCcccccceeeecccccCC
Q 006945 169 GASKTMGTASLSLQNFISP 187 (624)
Q Consensus 169 r~sKllG~~sisw~dLL~~ 187 (624)
+.--.||.|.|.++-|+..
T Consensus 79 s~dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEA 97 (168)
T ss_pred CcccccceeeeccHHHHHH
Confidence 8889999999999999966
No 124
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=26.55 E-value=2.9e+02 Score=35.19 Aligned_cols=124 Identities=17% Similarity=0.150 Sum_probs=0.0
Q ss_pred EEEEEEeecCcCCCcCCCCceEEEEEccCCceeeccCcceEeeecCCceeEEEEEeeccCcEEEEEEeeCCCccccCCCc
Q 006945 92 VFVEIVAVKNLPEDHKDKGDLFVFFSKSQPDIFFNAKQKLTILSKSGMKQVASFQCEATGELLFELVSHSTSKIPMTGAS 171 (624)
Q Consensus 92 V~leIv~~knlp~~~k~~~~lFVrl~k~q~d~~~k~~~~l~i~Se~~wkq~~~fqCE~TgeLvlELr~~~~~~L~~~r~s 171 (624)
+-+-+.++++|...+......+.-|.+. .......+.+.-...+.|....--.=+.-+--.+-+...+. +.-
T Consensus 581 ~k~tl~~~~~l~~~~~~~~~~~a~l~~~--~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~------~~g 652 (1227)
T COG5038 581 LKVTLREVKALDELSSKKDNKSAELYTN--AKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDV------QSG 652 (1227)
T ss_pred eEEEeeccccccCccccccceeEEEEec--ceEEeccceeeeccCCceeeecceEeccCcceeEEEEeccc------ccC
Q ss_pred ccccceeeecccccCCCCcceEeEEEEee-cCCCCCCCC---CeeE----EEEEeeecCCcc
Q 006945 172 KTMGTASLSLQNFISPISKLAVEQWFDLV-PRSGNVSSK---PISL----RIAVSFTIPTLA 225 (624)
Q Consensus 172 KllG~~sisw~dLL~~~s~LS~Ekw~eL~-~~~g~~ss~---pisL----RVa~SiTPPvqA 225 (624)
|.|+...-+|+||+.. +|.--.||+|. |+...-.+- ||.+ --..++++|++|
T Consensus 653 ~~i~~~~~~l~~li~~--t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~ 712 (1227)
T COG5038 653 KVIATEGSTLPDLIDR--TLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGA 712 (1227)
T ss_pred ceeccccccchHhhhc--cccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccce
No 125
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=26.38 E-value=9e+02 Score=27.95 Aligned_cols=77 Identities=13% Similarity=0.232 Sum_probs=49.6
Q ss_pred EEEEEEeeC----CCccccCCCcccccceeeecccccCCC--CcceEeEEEEeecCCCCCC-CCCeeEEEEEeeec----
Q 006945 153 LLFELVSHS----TSKIPMTGASKTMGTASLSLQNFISPI--SKLAVEQWFDLVPRSGNVS-SKPISLRIAVSFTI---- 221 (624)
Q Consensus 153 LvlELr~~~----~~~L~~~r~sKllG~~sisw~dLL~~~--s~LS~Ekw~eL~~~~g~~s-s~pisLRVa~SiTP---- 221 (624)
..||+..|. ..|= ..+..|+||+++++++ |-... +-+-+.-|+.|-.+....+ +.-.+|++.|-.-|
T Consensus 95 ~~L~i~VY~Gr~G~tCG-v~~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDPRf 172 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCG-VGNSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDPRF 172 (460)
T ss_pred ceEEEEEEECCCCCccc-ccccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCCee
Confidence 567877775 3341 1378899999999987 43332 3344577999887654332 23468888887766
Q ss_pred -------CCccceeeee
Q 006945 222 -------PTLAPHLLRM 231 (624)
Q Consensus 222 -------PvqAPYlLk~ 231 (624)
|...|+++..
T Consensus 173 VFQFdgepecSPQV~Qi 189 (460)
T PF06219_consen 173 VFQFDGEPECSPQVFQI 189 (460)
T ss_pred EEEcCCccccCcEEEEe
Confidence 5556666554
No 126
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=24.03 E-value=51 Score=34.88 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=39.0
Q ss_pred cCCcceeec--cCcceeeecccccc--ccccccccccccccceeeeeeCCCCCcccee
Q 006945 325 KEGHLFELL--GNRMINLFPGRKLD--YEHKHCQKQRSEEDFVTAIEFSPADPYGKAI 378 (624)
Q Consensus 325 ~dg~lfElS--~~kPl~fisGr~m~--fE~~~ls~~~sgd~FVT~V~~spE~pYGea~ 378 (624)
.++.+|+.+ .+.|+.|..+. +. |+.. +..+..++.+ .|.++|+.+||+..
T Consensus 176 ~dG~vfdss~~~g~p~~f~l~~-vipG~~Ea-L~~Mk~Gek~--~l~IP~~laYG~~g 229 (269)
T PRK10902 176 IDGKEFDNSYTRGEPLSFRLDG-VIPGWTEG-LKNIKKGGKI--KLVIPPELAYGKAG 229 (269)
T ss_pred CCCCEeeccccCCCceEEecCC-cchHHHHH-HhcCCCCcEE--EEEECchhhCCCCC
Confidence 367778877 46788887653 33 7777 8888899998 99999999999864
No 127
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.97 E-value=87 Score=31.96 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=48.3
Q ss_pred CcCCcceeec--cCcceeeecccccc---ccccccccccccccceeeeeeCCCCCcccee--------EEEeccCcceee
Q 006945 324 SKEGHLFELL--GNRMINLFPGRKLD---YEHKHCQKQRSEEDFVTAIEFSPADPYGKAI--------ALLDLKSGVIKV 390 (624)
Q Consensus 324 s~dg~lfElS--~~kPl~fisGr~m~---fE~~~ls~~~sgd~FVT~V~~spE~pYGea~--------aLLdLk~~~feV 390 (624)
-.|+.+|+.| -++|+.|--|.++. +..- +.+.=.+|.= .++++|+-+||+.= |+|-++-+.+++
T Consensus 99 leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqg-l~gMCvGEkR--kl~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i 175 (188)
T KOG0549|consen 99 LEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQG-LLGMCVGEKR--KLIIPPHLGYGERGAPPKIPGDAVLIFDIELVKI 175 (188)
T ss_pred ecCCCEEeeeccCCCCEEEEeCCCceeccHhHH-hhhhCcccce--EEecCccccCccCCCCCCCCCCeeEEEEEEEEEe
Confidence 4588999999 57899999888877 4333 5566666655 99999999999874 555555555555
Q ss_pred cc
Q 006945 391 KE 392 (624)
Q Consensus 391 d~ 392 (624)
..
T Consensus 176 ~~ 177 (188)
T KOG0549|consen 176 ER 177 (188)
T ss_pred ec
Confidence 43
No 128
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=21.48 E-value=50 Score=32.03 Aligned_cols=18 Identities=39% Similarity=1.132 Sum_probs=13.0
Q ss_pred cccCCCCCC--CCCCccccc
Q 006945 577 KTGGCGGCG--GGCGGNLVA 594 (624)
Q Consensus 577 ~~~~~~~~~--~~~~~~~~~ 594 (624)
..++||+|. +|||.++++
T Consensus 22 r~saCg~C~a~~gCG~~~l~ 41 (154)
T PRK10862 22 VKAGCSSCASRAGCGSRLLN 41 (154)
T ss_pred cCCCCcCcCCCCCchhhHHH
Confidence 446788888 689987654
No 129
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=21.36 E-value=27 Score=29.59 Aligned_cols=14 Identities=50% Similarity=0.762 Sum_probs=12.1
Q ss_pred eeeeCCCCCcccee
Q 006945 365 AIEFSPADPYGKAI 378 (624)
Q Consensus 365 ~V~~spE~pYGea~ 378 (624)
--+|+|||+||+|-
T Consensus 32 PprFSPeD~y~kYR 45 (59)
T COG2260 32 PPRFSPEDKYGKYR 45 (59)
T ss_pred CCCCCccchHHHHH
Confidence 44899999999986
Done!