BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006946
         (624 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q99P99|HDAC4_RAT Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2
          Length = 1077

 Score = 33.9 bits (76), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 12/107 (11%)

Query: 220 RYFEKISRELIPQ--KQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDC----QHK 273
           R  E++SR+   Q  + +KQ+ E+L       ++H  EL    + L+R  Q+     QH+
Sbjct: 94  RQHEQLSRQHEAQLHEHIKQQQEMLA------MKHQQELLEHQRKLERHRQEQELEKQHR 147

Query: 274 RQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKKSLWSRSLEEVM 320
            Q+       +KG+  A+   E+K + ++  + +KK+L  R+L   M
Sbjct: 148 EQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLNHCM 194


>sp|Q0AEJ6|ATPB2_NITEC ATP synthase subunit beta 2 OS=Nitrosomonas eutropha (strain C91)
           GN=atpD2 PE=3 SV=1
          Length = 485

 Score = 33.5 bits (75), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 88  EVSARLGRAGTVGLGKAVDVLDTLGSSMTNLNPNNGFSGVGTKSNELSILAFEVANTIVK 147
           E   + G  G  G+GK V + + + ++  +    + F G+G +S E   L  E+    V+
Sbjct: 168 ERGGKTGLFGGAGVGKTVLITELINNTAQHHKGVSLFCGIGERSREAEELYREMGEAGVR 227

Query: 148 GSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRF 206
              +ML        Q+ E    A GV+ LV K    + + F  D   D+ +    V RF
Sbjct: 228 DKTVML------FGQMSE----APGVRFLVGKTALTMAEYFRDDLGQDVLLLIDNVFRF 276


>sp|B3EH06|PNP_CHLL2 Polyribonucleotide nucleotidyltransferase OS=Chlorobium limicola
           (strain DSM 245 / NBRC 103803) GN=pnp PE=3 SV=1
          Length = 736

 Score = 33.5 bits (75), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 66  DGGLSQKSKSVRSTQAAVAKVSEVSARLGRAGTVGLGKAVDVLDTLGSSMTNLNPNNGF 124
           DG ++    SV  T AA+A +  + A+    GT+ LGK  DV D LG+ +  L   +G 
Sbjct: 612 DGTVTIACSSVEGTHAALATIKTLLAK-PEVGTIYLGKVRDVRDELGAFVEFLPKTDGL 669


>sp|F4I1S7|ELP2_ARATH Elongator complex protein 2 OS=Arabidopsis thaliana GN=ELP2 PE=1
           SV=1
          Length = 838

 Score = 33.1 bits (74), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 22/108 (20%)

Query: 123 GFSGVGTKSNELSILAFEVANTIVKGSNLMLSISESSVRQLKEV----------VLPAEG 172
           GF G     N LSILA           N+  S  ES   Q+++V          V  A  
Sbjct: 366 GFYGGHWSPNSLSILAHGYGGAFHLWRNVS-SSKESENWQMQKVPSGHFAAVTDVTWART 424

Query: 173 VQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGR 220
            + L+S   D+  ++F+A K D+           GN ++D  WH L R
Sbjct: 425 GEYLLSVSQDQTTRVFSAWKNDE-----------GNEAEDEHWHELAR 461


>sp|Q99MY0|SPZ1_MOUSE Spermatogenic leucine zipper protein 1 OS=Mus musculus GN=Spz1 PE=1
           SV=1
          Length = 378

 Score = 33.1 bits (74), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 27/147 (18%)

Query: 133 ELSILAFEVANTIVKGSNLMLSIS-ESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAAD 191
           EL++   E  N I    +L +    E     +K+++L  +  +N+V K        FA D
Sbjct: 107 ELNVRGVEKKNKIRFKDDLFIHFDPEREQNTMKQMLLKNQSAKNMVPK--------FARD 158

Query: 192 --KRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFEKISRELIPQKQLKQEAELLMEQLMTL 249
               ++ + F G ++    R ++   H  G Y           ++L+      MEQL+  
Sbjct: 159 LCNAEETRGFDGMLLSV-KRPRNGSLHLRGEY-----------RKLRNN----MEQLLQE 202

Query: 250 VQHTAELYNELQILDRFEQDCQHKRQE 276
             H ++ +NEL  L R  Q+CQ++ QE
Sbjct: 203 ADHWSKQHNELSELMRSYQECQNETQE 229


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,459,110
Number of Sequences: 539616
Number of extensions: 9320460
Number of successful extensions: 23685
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 23640
Number of HSP's gapped (non-prelim): 140
length of query: 624
length of database: 191,569,459
effective HSP length: 124
effective length of query: 500
effective length of database: 124,657,075
effective search space: 62328537500
effective search space used: 62328537500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)