Query 006946
Match_columns 624
No_of_seqs 123 out of 144
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:08:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_A Fibrinogen alpha chain; 78.2 5.1 0.00017 44.4 8.2 87 289-394 119-205 (562)
2 3twe_A Alpha4H; unknown functi 59.3 11 0.00037 26.0 3.6 24 252-275 2-25 (27)
3 3hls_A Guanylate cyclase solub 55.0 4.6 0.00016 33.0 1.6 16 389-404 49-64 (66)
4 1deq_A Fibrinogen (alpha chain 37.6 87 0.003 33.6 8.2 40 366-406 181-220 (390)
5 3f4m_A Tumor necrosis factor, 26.9 2.2E+02 0.0074 27.1 8.2 116 234-377 28-156 (161)
6 1z23_A CRK-associated substrat 24.6 3.2E+02 0.011 26.0 8.9 128 138-339 20-159 (163)
7 1m1j_B Fibrinogen beta chain; 18.9 8.8E+02 0.03 26.4 12.0 18 288-305 143-160 (464)
8 3ghg_A Fibrinogen alpha chain; 18.2 8.9E+02 0.031 27.2 11.9 83 216-306 60-150 (562)
9 3mp7_B Preprotein translocase 16.9 36 0.0012 27.6 0.6 32 190-221 2-33 (61)
10 3pdy_A Plectin; cytoskeleton, 16.3 6.2E+02 0.021 23.4 9.1 39 232-270 90-128 (210)
No 1
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.17 E-value=5.1 Score=44.45 Aligned_cols=87 Identities=13% Similarity=0.281 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcchhhhhhhhHH
Q 006946 289 FAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYAN 368 (624)
Q Consensus 289 l~~lq~elk~QRk~Vk~LKk~SLWsrt~d~VVekLvriV~~i~~rI~~vFG~~~~~~~~~~~~~~~~TLG~AgLALHYAN 368 (624)
+..|+.+|..|-+.++.|+. ++++.+.++-+-=--|-..|..-.|++..... -.--| =-|-|
T Consensus 119 IqyLKekVdnQlsnIrvLQs------nLedq~~kIQRLEvDIdiqirsCKgsCsr~~~------~~vd~------~sY~~ 180 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQK------NVRAQLVDMKRLEVDIDIKIRSCRGSCSRALA------REVDL------KDYED 180 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCC------CCCCH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccccccchhe------eecch------HHHHH
Confidence 34556666666666655553 35555544444334445566666675542111 11111 14999
Q ss_pred HHHHHHHHhhcCCCCCCchHHHhhhc
Q 006946 369 IILQIDSLVARSSSMPPSTRDALYQS 394 (624)
Q Consensus 369 IIi~IEklvs~p~~v~~~aRD~LYqm 394 (624)
+=-|+|.+. ...+.|...|..||.|
T Consensus 181 ~QKQLeQv~-a~dL~p~~~~q~Lp~l 205 (562)
T 3ghg_A 181 QQKQLEQVI-AKDLLPSRDRQHLPLI 205 (562)
T ss_dssp HHHHHHHHH-TTCCCCSCCCC-----
T ss_pred HHHHHHHHh-hcccCCccccccchhc
Confidence 999999987 4566788888888876
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=59.27 E-value=11 Score=26.00 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=17.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhh
Q 006946 252 HTAELYNELQILDRFEQDCQHKRQ 275 (624)
Q Consensus 252 ~Ta~LY~ELeaLd~lEq~~rrk~~ 275 (624)
+.-+||.|||.|.+-=..+|+|+.
T Consensus 2 nadelykeledlqerlrklrkklr 25 (27)
T 3twe_A 2 NADELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356899999988776666666653
No 3
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=55.00 E-value=4.6 Score=33.00 Aligned_cols=16 Identities=50% Similarity=0.906 Sum_probs=11.2
Q ss_pred HHhhhcCchhHHHHHh
Q 006946 389 DALYQSLPPSIKSALR 404 (624)
Q Consensus 389 D~LYqmLP~sIRsaLR 404 (624)
+=||+|||++|-..|+
T Consensus 49 ~LL~~mLP~~VA~~Lk 64 (66)
T 3hls_A 49 TLLYSVLPPSVANELR 64 (66)
T ss_dssp HHHHHTSCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHh
Confidence 4577777777776665
No 4
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=37.63 E-value=87 Score=33.60 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhhcCCCCCCchHHHhhhcCchhHHHHHhhc
Q 006946 366 YANIILQIDSLVARSSSMPPSTRDALYQSLPPSIKSALRSK 406 (624)
Q Consensus 366 YANIIi~IEklvs~p~~v~~~aRD~LYqmLP~sIRsaLRsk 406 (624)
|-|+-=|+|.+.+ -.+.|.-.|-.|+.+=|..++..+..+
T Consensus 181 ye~qqKQL~qv~a-~~llP~~~~q~lp~LK~~p~kd~vP~~ 220 (390)
T 1deq_A 181 YKNQQKQLEQVIA-INLLPSRDIQYLPILKMSTITGPVPRE 220 (390)
T ss_pred HHHHHHHHHhhhh-hccccccccccccccccccccccCChh
Confidence 5566667776543 334454445455555555554443333
No 5
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=26.90 E-value=2.2e+02 Score=27.15 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHhhhcCC------CCCCCCCccHHHHHHHHHHHH
Q 006946 234 QLKQEAELLMEQLMTLVQHTAELYN-------ELQILDRFEQDCQHKRQEEDN------PVGSQKGESFAILRAELKSQR 300 (624)
Q Consensus 234 ~~~~~ae~~m~km~rlV~~Ta~LY~-------ELeaLd~lEq~~rrk~~~~~~------~~~~~~g~~l~~lq~elk~QR 300 (624)
+.+++|++.++.+.+.|-...-||+ ||..+++|- +|.+.... -+.. .=....|..-|..-|
T Consensus 28 ~nkkeA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr----~k~~~~amt~iSF~eVdf--TfD~~~L~~~L~ec~ 101 (161)
T 3f4m_A 28 HSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFR----QKLRQGAMTALSFGEVDF--TFEAAVLAGLLTECR 101 (161)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH----HHHHHHHHHHHHHTSTTS--CCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHH----HHHHHHHHHHhhhhccCc--cccHHHHHHHHHHHH
Confidence 4578999999999999999999997 455555544 44332110 0000 012344666666666
Q ss_pred HHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHh
Q 006946 301 KQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYANIILQIDSLV 377 (624)
Q Consensus 301 k~Vk~LKk~SLWsrt~d~VVekLvriV~~i~~rI~~vFG~~~~~~~~~~~~~~~~TLG~AgLALHYANIIi~IEklv 377 (624)
+....|=+.-|=-++ +.||.+||+-.....-...-..+ -..-|--+|+--+++|+
T Consensus 102 ~lL~~lv~~HLT~KS---------------~~Ri~~vF~~f~~~efL~~lf~~-------~~~~~L~kI~~~Lnkll 156 (161)
T 3f4m_A 102 DVLLELVEHHLTPKS---------------HGRIRHVFDHFSDPGLLTALYGP-------DFTQHLGKICDGLRKLL 156 (161)
T ss_dssp HHHHHHHTTTSCHHH---------------HHHHHHHHHHHTCHHHHHHHTSG-------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcch---------------HHHHHHHHHHhCCHHHHHHHhCc-------HHHHHHHHHHHHHHHHH
Confidence 655554444443332 56788888633210000000001 33455666777777665
No 6
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=24.57 E-value=3.2e+02 Score=26.03 Aligned_cols=128 Identities=20% Similarity=0.191 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHh---------hhcC---CHHHHHHHhhhccCccccccccccChHHHHHHHHHHHHHHHhHHHHHHHh
Q 006946 138 AFEVANTIVKGSNL---------MLSI---SESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVR 205 (624)
Q Consensus 138 AFEVAntmsK~~~L---------~~SL---Sd~~I~~Lr~evL~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaR 205 (624)
==||+..++++..+ ||+. -+.+|..||.-+.+ .-+-+.+|-.||+-+.
T Consensus 20 Q~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~-------------------v~~Sl~efL~Farga~- 79 (163)
T 1z23_A 20 QQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAA-------------------VHGAVHELLEFARSAV- 79 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH-
Confidence 34677777777776 7777 34555555554332 1122344555555553
Q ss_pred hhccCCCccccchhHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCCC
Q 006946 206 FGNRSKDPQWHNLGRYFEKISRELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQHKRQEEDNPVGSQK 285 (624)
Q Consensus 206 lG~rC~DP~~hnfdr~F~~l~~~~~~~~~~~~~ae~~m~km~rlV~~Ta~LY~ELeaLd~lEq~~rrk~~~~~~~~~~~~ 285 (624)
||-|.-+ .+.+..++.+.++ ++......|.+-.++|+.-+ +. .
T Consensus 80 -~nA~~~~------------------d~~L~~kl~r~Lq---~l~ds~qiL~~~~~~Ld~~~-------------~~--~ 122 (163)
T 1z23_A 80 -SSATHTS------------------DRTLHAKLSRQLQ---KMEDVYQTLVVHGQVLDSGR-------------GG--P 122 (163)
T ss_dssp -TTCCCTT------------------CCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCS-------------SS--C
T ss_pred -hhccccc------------------cchHHHHHHHHHH---HHhhHHHHHHHHHHHHHccC-------------CC--C
Confidence 5655521 2334433334333 44445555555556665333 11 1
Q ss_pred CccHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHhhC
Q 006946 286 GESFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFG 339 (624)
Q Consensus 286 g~~l~~lq~elk~QRk~Vk~LKk~SLWsrt~d~VVekLvriV~~i~~rI~~vFG 339 (624)
..+.+.|-+=|+.-|.. - +-..+.+-||+.-+..-|-
T Consensus 123 ~~~~DdLDrfVmvaR~v--------------p---dD~kqlas~I~~na~lLFk 159 (163)
T 1z23_A 123 GFTLDDLDRLVACSRAV--------------P---EDAKQLASFLHGNASLLFR 159 (163)
T ss_dssp CCCHHHHHHHHHHHHHH--------------H---HHHHHHHHHHHHHHHHHSC
T ss_pred CCCcchHHHHHHhhccC--------------C---HHHHHHHHHHHhhhhheec
Confidence 23467888777775532 2 2223345566777777774
No 7
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=18.88 E-value=8.8e+02 Score=26.43 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=10.9
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 006946 288 SFAILRAELKSQRKQVKI 305 (624)
Q Consensus 288 ~l~~lq~elk~QRk~Vk~ 305 (624)
.+..+..+|..|.+.++.
T Consensus 143 ~~~~~~~~~e~~~~~i~~ 160 (464)
T 1m1j_B 143 ILSEYNTEMELHYNYIKD 160 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666666666666553
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=18.20 E-value=8.9e+02 Score=27.15 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=47.9
Q ss_pred cchhHHHHHHhhcccchhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHh-HHHHHHHHHHHHhhhcCCCCCCCCCc
Q 006946 216 HNLGRYFEKISRELIPQKQLKQEAELLMEQLMTLV-------QHTAELYNELQ-ILDRFEQDCQHKRQEEDNPVGSQKGE 287 (624)
Q Consensus 216 hnfdr~F~~l~~~~~~~~~~~~~ae~~m~km~rlV-------~~Ta~LY~ELe-aLd~lEq~~rrk~~~~~~~~~~~~g~ 287 (624)
++|....++|...+..-.+...+++.-++.|+.+. .....-|.|+- .|.+--+.++++++++- .
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl--------s 131 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV--------Q 131 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH--------H
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 34444455555444433444455555555554433 23334455544 55555555555554432 4
Q ss_pred cHHHHHHHHHHHHHHHHHh
Q 006946 288 SFAILRAELKSQRKQVKIL 306 (624)
Q Consensus 288 ~l~~lq~elk~QRk~Vk~L 306 (624)
++..||+-|+.||.++++|
T Consensus 132 nIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999988
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=16.91 E-value=36 Score=27.58 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=23.5
Q ss_pred HHHHHHHhHHHHHHHhhhccCCCccccchhHH
Q 006946 190 ADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRY 221 (624)
Q Consensus 190 AEk~eeL~~~A~~VaRlG~rC~DP~~hnfdr~ 221 (624)
++..|.++.|.++..|+=++|+-|.|..|-.+
T Consensus 2 ~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~i 33 (61)
T 3mp7_B 2 AELQERIRHFWKESRRAFLVTKKPNWATYKRA 33 (61)
T ss_dssp ------CTTHHHHHTHHHHHSCCCCTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 46678889999999999999999999887654
No 10
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=16.34 E-value=6.2e+02 Score=23.36 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006946 232 QKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDC 270 (624)
Q Consensus 232 ~~~~~~~ae~~m~km~rlV~~Ta~LY~ELeaLd~lEq~~ 270 (624)
+..+..-++.+.++|+.|-+.-.+...++.=|++-|+.+
T Consensus 90 ~~~L~~~a~~R~~~L~~L~~f~~~~~~~~~Wl~eke~~~ 128 (210)
T 3pdy_A 90 YAKLLNSSKARLRSLESLHSFVAAATKELMWLNEKEEEE 128 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677778888866555444445555555555544
Done!