Query 006946
Match_columns 624
No_of_seqs 123 out of 144
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 13:08:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006946.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006946hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jfia_ a.22.1.3 (A:) Negative 23.8 61 0.0044 23.8 5.3 50 161-211 6-55 (66)
2 d1vcsa1 a.47.2.1 (A:8-96) Vesi 17.9 31 0.0022 27.5 2.5 20 393-412 55-74 (89)
3 d2pjqa1 a.211.1.1 (A:1-215) Un 15.4 76 0.0055 28.2 4.8 97 154-251 84-206 (215)
4 d1r6ta1 a.16.1.3 (A:7-60) N-te 15.3 91 0.0066 23.1 4.4 48 288-339 2-49 (54)
5 d2oufa1 a.292.1.1 (A:13-92) Hy 14.2 64 0.0047 25.6 3.5 52 420-493 17-72 (80)
6 d1ku5a_ a.22.1.2 (A:) Archaeal 13.6 82 0.0059 23.0 3.8 43 168-211 12-54 (66)
7 d1htaa_ a.22.1.2 (A:) Archaeal 13.0 1.6E+02 0.012 21.3 5.4 52 155-211 4-55 (68)
8 d1ugoa_ a.7.7.1 (A:) BAG-famil 12.7 2E+02 0.015 23.0 6.3 36 188-223 19-54 (99)
9 d2o3fa1 a.4.1.20 (A:1-83) Puta 11.0 67 0.0049 24.8 2.6 65 144-219 5-69 (83)
10 d1a6qa1 a.159.1.1 (A:297-368) 10.2 48 0.0035 25.9 1.4 33 91-124 22-55 (72)
No 1
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.77 E-value=61 Score=23.82 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=37.0
Q ss_pred HHHhhhccCccccccccccChHHHHHHHHHHHHHHHhHHHHHHHhhhccCC
Q 006946 161 RQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSK 211 (624)
Q Consensus 161 ~~Lr~evL~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 211 (624)
.|.|. |+++..=-..||.|--+++.-|+-....+|-.-|..+++-.+|+.
T Consensus 6 srVkk-imk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krkt 55 (66)
T d1jfia_ 6 ARIKK-IMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKT 55 (66)
T ss_dssp HHHHH-HHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---C
T ss_pred HHHHH-HHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34444 444333335899999999999999999999999999998877654
No 2
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.93 E-value=31 Score=27.49 Aligned_cols=20 Identities=15% Similarity=0.577 Sum_probs=17.3
Q ss_pred hcCchhHHHHHhhccccccc
Q 006946 393 QSLPPSIKSALRSKLQSFHV 412 (624)
Q Consensus 393 qmLP~sIRsaLRskLr~~~~ 412 (624)
+.+|++.|+.+.+|||.|-.
T Consensus 55 r~~p~s~R~~~~~klr~Yk~ 74 (89)
T d1vcsa1 55 REIPPQSRGMYSNRMRSYKQ 74 (89)
T ss_dssp TTSCTTTHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH
Confidence 35899999999999998754
No 3
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}
Probab=15.44 E-value=76 Score=28.15 Aligned_cols=97 Identities=13% Similarity=0.175 Sum_probs=53.5
Q ss_pred cCCHHHHHHHhhhccCcccccccccc---ChHHHHHHHHHHHHHHHhH--HHHHHHhh---hccCCCcccc---------
Q 006946 154 SISESSVRQLKEVVLPAEGVQNLVSK---DMDELLKIFAADKRDDLKI--FTGEVVRF---GNRSKDPQWH--------- 216 (624)
Q Consensus 154 SLSd~~I~~Lr~evL~SeGVq~LVS~---D~~~LL~LA~AEk~eeL~~--~A~~VaRl---G~rC~DP~~h--------- 216 (624)
.++++.+..+..-| ....-.+-.+. ..-+.--+--||+++.|-. +|+..+-- |+.=.||...
T Consensus 84 ~~~~~~i~~I~~iI-~~~s~s~~~~~~~p~t~Ea~Iv~DADrLDalGaiGIaR~f~y~g~~g~~~~~p~~~~~~~~~~~~ 162 (215)
T d2pjqa1 84 NVTADDQTAIFAII-DHMSFSKSFNGPQKLSLEGQVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTREQ 162 (215)
T ss_dssp TCCHHHHHHHHHHH-TSCCTGGGGGCCCCCCSHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTCCSCCTTSCCCSSCCHHH
T ss_pred CCCHHHHHHHHHHH-HhHHHHhccCCCCCcCHHHHHHHHHHHHHhccchhHHHHHHHHHHhCCcccCcccccccccchhh
Confidence 46777766665432 22221111111 1123334567899998876 45555533 3334566432
Q ss_pred -------chhHHHHHHhh--cccchhhhHHHHHHHHHHHHHHHH
Q 006946 217 -------NLGRYFEKISR--ELIPQKQLKQEAELLMEQLMTLVQ 251 (624)
Q Consensus 217 -------nfdr~F~~l~~--~~~~~~~~~~~ae~~m~km~rlV~ 251 (624)
.++++|++|.. +..--..-++.|+.+.+-|+.|++
T Consensus 163 ~~~~~~~~i~Hf~eKLl~l~~~m~T~~gk~lA~~R~~~m~~Fl~ 206 (215)
T d2pjqa1 163 YRHQPGTAINHFYEKLFKLAALMNTDTAKALAAHRTAVMHEFVD 206 (215)
T ss_dssp HHHSCCCTTHHHHHTGGGHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 48899988864 322223345678888888877764
No 4
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.32 E-value=91 Score=23.05 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHhhC
Q 006946 288 SFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFG 339 (624)
Q Consensus 288 ~l~~lq~elk~QRk~Vk~LKk~SLWsrt~d~VVekLvriV~~i~~rI~~vFG 339 (624)
++.+|.++|..|=-.||.||..--=....|..|.+|. -+=...+.+.|
T Consensus 2 S~~eL~~~I~~QGd~VR~LKa~ka~K~~id~aV~~LL----~LK~~yk~~tG 49 (54)
T d1r6ta1 2 SLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLV----SLKMSYKAAAG 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH----HHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH----HHHHHHHHhhC
Confidence 4678999999999999999976433334455555543 33455566555
No 5
>d2oufa1 a.292.1.1 (A:13-92) Hypothetical protein HP0242 {Helicobacter pylori [TaxId: 210]}
Probab=14.17 E-value=64 Score=25.64 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhccCCc--cchhhcccCCCCCCCCCCCCCeeeeecccc--cchhhhHHHHHHHHHH
Q 006946 420 QIKDEMEKTLQWLVPIATNTAKAHHGFG--WVGEWANLGSDLNRKPAGPTDVIRLETLYH--ADKEKTEAYILDLLLW 493 (624)
Q Consensus 420 ewk~amekiL~WLaPmAhNTirah~gfg--W~gEwa~~rs~e~~~~~~~tnVLllQTLyf--ADkeKTEAaI~ELLVg 493 (624)
=.+.+++++|+|||-|= .++. ++|+| |..| +|-++| ..+++.+..--.|-+.
T Consensus 17 lv~~ELek~lerlaamE-~l~E-~~~~~e~~e~~--------------------~~~~~~~~e~~d~v~~~~~dl~Ie 72 (80)
T d2oufa1 17 LSKKELERLLELLALLE-TFIE-KEDLEEKFESF--------------------AKALRIDEELQQKIESRKTDIVIQ 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHH-HTTCHHHHHHH--------------------HHGGGTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHH-HhCCcHHHHHH--------------------HHHHHHhHHhHHHHHhhccchHHH
Confidence 35679999999999764 3333 45676 5554 455666 4566666665555443
No 6
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=13.60 E-value=82 Score=22.97 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=36.2
Q ss_pred cCccccccccccChHHHHHHHHHHHHHHHhHHHHHHHhhhccCC
Q 006946 168 LPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSK 211 (624)
Q Consensus 168 L~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 211 (624)
++..|+. -||.|--+++.-||-+..+.|-.-|..++.-++|..
T Consensus 12 ~k~~~~~-ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKT 54 (66)
T d1ku5a_ 12 IRKAGAE-RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKT 54 (66)
T ss_dssp HHHTTCS-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE
T ss_pred HHhCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3445665 489999999999999999999999999998877764
No 7
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=13.02 E-value=1.6e+02 Score=21.27 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=43.0
Q ss_pred CCHHHHHHHhhhccCccccccccccChHHHHHHHHHHHHHHHhHHHHHHHhhhccCC
Q 006946 155 ISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSK 211 (624)
Q Consensus 155 LSd~~I~~Lr~evL~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 211 (624)
|.-..|.++= ++-|+.+ ||+|--+++.=++-+...+|-.-|..+++-++|..
T Consensus 4 LP~a~I~ri~----k~~~~~r-is~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkT 55 (68)
T d1htaa_ 4 LPIAPIGRII----KNAGAER-VSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKT 55 (68)
T ss_dssp SCHHHHHHHH----HHTTCSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHHH----HHCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 5556666653 4457776 89999999999999999999999999999888875
No 8
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.67 E-value=2e+02 Score=23.04 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=27.4
Q ss_pred HHHHHHHHHhHHHHHHHhhhccCCCccccchhHHHH
Q 006946 188 FAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFE 223 (624)
Q Consensus 188 A~AEk~eeL~~~A~~VaRlG~rC~DP~~hnfdr~F~ 223 (624)
+..+..++++.+...|..|...|.|.....|.....
T Consensus 19 ~I~~i~~ev~~L~~~V~~f~~~~~dke~~~L~E~L~ 54 (99)
T d1ugoa_ 19 RLQEIQREVKAIEPQVVGFSGLSDDKNYKRLERILT 54 (99)
T ss_dssp HHHHHHHHHHHSHHHHHTCCCCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 345677888899999999999999976655555433
No 9
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=11.02 E-value=67 Score=24.77 Aligned_cols=65 Identities=6% Similarity=0.047 Sum_probs=50.8
Q ss_pred HHHHHHHhhhcCCHHHHHHHhhhccCccccccccccChHHHHHHHHHHHHHHHhHHHHHHHhhhccCCCccccchh
Q 006946 144 TIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLG 219 (624)
Q Consensus 144 tmsK~~~L~~SLSd~~I~~Lr~evL~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~DP~~hnfd 219 (624)
.|..+-..+.+||..|-. |-+-|-++.+.+..+-..|..++..+--.+|.||.+++.=..|..|-
T Consensus 5 ~l~~i~~~~~~Ls~~e~~-----------ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e~k 69 (83)
T d2o3fa1 5 GLAIIQSMKHKLPPSERK-----------LADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLK 69 (83)
T ss_dssp HHHHHHHHGGGSCHHHHH-----------HHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHhhCCHHHHH-----------HHHHHHcCHHHHHHccHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHH
Confidence 466677778888887653 44566788889999999999999999999999999999855444443
No 10
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.16 E-value=48 Score=25.87 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=21.5
Q ss_pred hhhccccccCccchhhHhhhhcc-cccCCCCCCCc
Q 006946 91 ARLGRAGTVGLGKAVDVLDTLGS-SMTNLNPNNGF 124 (624)
Q Consensus 91 ~~lgra~~~g~~kavevldtlgs-sm~~l~~~~gf 124 (624)
-++.++|. +.---+.|+.+|.+ .|.+|-|+||+
T Consensus 22 eii~~~~~-~~~dl~~Vm~~L~~e~Ip~LPPGGGL 55 (72)
T d1a6qa1 22 EIIKKQGE-GVPDLVHVMRTLASENIPSLPPGGEL 55 (72)
T ss_dssp HHCC-----CCCCHHHHHHHHHHTTCSSCCTTTGG
T ss_pred HHHHHccc-CCchHHHHHHHHHhcCCCCCCCCccH
Confidence 34455552 33224678999987 89999999988
Done!