Query 006947
Match_columns 624
No_of_seqs 581 out of 2351
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:10:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 99.9 7.2E-27 2.5E-31 223.1 17.6 143 43-215 6-148 (169)
2 4gpm_A Engineered protein OR26 99.9 4.3E-26 1.5E-30 217.8 15.4 138 30-190 26-163 (169)
3 4b93_B Ankyrin repeat domain-c 99.9 5.2E-26 1.8E-30 232.0 15.1 156 29-214 74-229 (269)
4 2rfa_A Transient receptor pote 99.9 2E-25 7E-30 218.4 17.2 170 31-215 27-209 (232)
5 2rfm_A Putative ankyrin repeat 99.9 1.1E-25 3.6E-30 215.2 13.6 152 34-215 28-179 (192)
6 3hra_A Ankyrin repeat family p 99.9 5.3E-25 1.8E-29 210.5 17.7 158 33-215 31-190 (201)
7 1oy3_D Transcription factor in 99.9 8.7E-25 3E-29 218.7 17.0 166 33-214 37-269 (282)
8 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.3E-24 4.4E-29 204.1 17.1 149 37-215 10-158 (169)
9 3v31_A Ankyrin repeat family A 99.9 4.9E-25 1.7E-29 205.6 14.1 146 40-215 2-147 (167)
10 3twr_A Tankyrase-2; ankyrin re 99.9 9E-25 3.1E-29 203.5 15.6 148 36-212 3-150 (165)
11 1yyh_A HN1;, notch 1, ankyrin 99.9 9.7E-25 3.3E-29 218.1 16.1 163 36-215 52-235 (253)
12 1awc_B Protein (GA binding pro 99.9 1.3E-24 4.3E-29 200.6 15.1 145 40-215 1-145 (153)
13 3f6q_A Integrin-linked protein 99.9 1.2E-24 4.2E-29 205.9 14.8 147 39-214 3-149 (179)
14 1k1a_A B-cell lymphoma 3-encod 99.9 1.8E-24 6.1E-29 211.9 16.3 168 31-214 36-227 (241)
15 3v30_A DNA-binding protein rfx 99.9 1.7E-24 5.9E-29 202.9 14.7 146 41-215 2-147 (172)
16 1d9s_A Cyclin-dependent kinase 99.9 7.1E-25 2.4E-29 199.0 11.6 133 32-188 3-136 (136)
17 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.9E-24 6.5E-29 200.0 14.0 146 39-215 3-149 (162)
18 3b7b_A Euchromatic histone-lys 99.9 4E-24 1.4E-28 209.6 16.6 165 34-214 4-188 (237)
19 2rfa_A Transient receptor pote 99.9 4.3E-24 1.5E-28 209.0 16.6 147 40-215 2-166 (232)
20 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.9E-24 1.7E-28 196.3 15.9 144 41-215 2-145 (156)
21 3b7b_A Euchromatic histone-lys 99.9 7.1E-24 2.4E-28 207.8 17.6 169 30-215 33-222 (237)
22 1ikn_D Protein (I-kappa-B-alph 99.9 2.7E-24 9.1E-29 211.7 14.6 153 33-215 37-196 (236)
23 1oy3_D Transcription factor in 99.9 2.3E-24 7.8E-29 215.6 14.3 164 34-214 2-236 (282)
24 2f8y_A Notch homolog 1, transl 99.9 9.1E-24 3.1E-28 205.1 18.0 162 37-215 21-203 (223)
25 3aji_A 26S proteasome non-ATPa 99.9 7.4E-24 2.5E-28 206.9 17.3 153 33-215 32-184 (231)
26 2etb_A Transient receptor pote 99.9 1.2E-24 4.2E-29 216.7 11.9 177 31-215 29-233 (256)
27 3aji_A 26S proteasome non-ATPa 99.9 4.9E-24 1.7E-28 208.1 15.5 154 31-214 63-216 (231)
28 4b93_B Ankyrin repeat domain-c 99.9 4.4E-24 1.5E-28 217.7 15.8 162 36-214 6-196 (269)
29 2xai_A ASB-9, ankyrin repeat a 99.9 7.9E-24 2.7E-28 212.7 16.3 152 31-214 26-177 (261)
30 2dzn_A Probable 26S proteasome 99.9 9.8E-24 3.4E-28 205.2 15.9 154 34-214 29-185 (228)
31 1s70_B 130 kDa myosin-binding 99.9 7.7E-24 2.6E-28 214.7 15.7 147 38-214 37-243 (299)
32 2vge_A RELA-associated inhibit 99.9 2.9E-24 9.8E-29 213.9 12.1 138 30-190 10-150 (229)
33 1bi7_B P16INK4A, MTS1, multipl 99.9 2E-24 6.8E-29 200.6 9.9 144 35-209 6-150 (156)
34 4hbd_A KN motif and ankyrin re 99.9 6.1E-24 2.1E-28 216.6 14.5 152 34-215 104-262 (276)
35 2f8y_A Notch homolog 1, transl 99.9 1.9E-23 6.6E-28 202.8 17.2 147 52-214 2-169 (223)
36 3jxi_A Vanilloid receptor-rela 99.9 2.9E-24 9.9E-29 214.2 11.1 170 38-215 43-237 (260)
37 1sw6_A Regulatory protein SWI6 99.9 3.6E-24 1.2E-28 223.5 11.4 156 30-214 119-327 (327)
38 1yyh_A HN1;, notch 1, ankyrin 99.9 4E-24 1.4E-28 213.6 11.2 153 33-214 2-168 (253)
39 3ljn_A Hypothetical protein; a 99.9 8.5E-24 2.9E-28 221.7 13.9 167 32-215 44-256 (364)
40 2dzn_A Probable 26S proteasome 99.9 3E-23 1E-27 201.8 16.6 148 37-214 68-219 (228)
41 1k1a_A B-cell lymphoma 3-encod 99.9 3.4E-23 1.2E-27 202.7 16.7 165 34-214 2-194 (241)
42 2pnn_A Transient receptor pote 99.9 5.8E-24 2E-28 214.2 11.0 172 36-215 49-245 (273)
43 3f6q_A Integrin-linked protein 99.9 3.9E-23 1.3E-27 195.5 16.0 137 31-190 29-165 (179)
44 3d9h_A CDNA FLJ77766, highly s 99.9 4.2E-23 1.4E-27 210.9 17.1 152 32-214 50-201 (285)
45 2xai_A ASB-9, ankyrin repeat a 99.9 3.2E-23 1.1E-27 208.3 15.9 145 40-215 2-146 (261)
46 3utm_A Tankyrase-1; tankyrase, 99.9 6.9E-23 2.3E-27 210.6 18.6 104 31-153 48-151 (351)
47 3d9h_A CDNA FLJ77766, highly s 99.9 3.9E-23 1.3E-27 211.1 16.6 152 31-214 82-233 (285)
48 3v30_A DNA-binding protein rfx 99.9 1.3E-23 4.6E-28 196.8 11.9 135 33-190 28-162 (172)
49 2jab_A H10-2-G3; HER2, darpin, 99.9 3.1E-23 1.1E-27 188.1 13.9 127 37-186 10-136 (136)
50 2fo1_E LIN-12 protein; beta-ba 99.9 4.7E-23 1.6E-27 218.6 16.2 169 31-215 156-358 (373)
51 1s70_B 130 kDa myosin-binding 99.9 5.4E-23 1.8E-27 208.5 15.6 153 30-214 62-276 (299)
52 3hra_A Ankyrin repeat family p 99.9 9.3E-23 3.2E-27 194.8 16.2 148 39-215 3-152 (201)
53 3ljn_A Hypothetical protein; a 99.9 3.2E-23 1.1E-27 217.3 14.2 154 32-215 11-223 (364)
54 1n11_A Ankyrin; clathrin, BAND 99.9 8.4E-23 2.9E-27 219.0 16.8 167 32-215 203-389 (437)
55 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7.8E-23 2.7E-27 179.9 13.6 126 40-188 1-126 (126)
56 2y1l_E Darpin-8.4; hydrolase-i 99.9 1E-22 3.6E-27 191.1 15.4 133 31-186 37-169 (169)
57 3c5r_A BARD-1, BRCA1-associate 99.9 3.4E-23 1.2E-27 187.5 11.5 129 36-187 5-133 (137)
58 4g8k_A 2-5A-dependent ribonucl 99.9 1.4E-22 4.9E-27 210.1 17.7 172 32-215 49-251 (337)
59 1ihb_A P18-INK4C(INK6), cyclin 99.9 5.7E-23 1.9E-27 190.0 12.7 134 31-188 28-162 (162)
60 3t8k_A Uncharacterized protein 99.9 3.6E-23 1.2E-27 200.3 11.3 152 40-215 5-166 (186)
61 1wdy_A 2-5A-dependent ribonucl 99.9 3.4E-22 1.2E-26 199.0 18.6 166 38-215 36-231 (285)
62 1n11_A Ankyrin; clathrin, BAND 99.9 1E-22 3.4E-27 218.5 15.5 153 33-215 6-158 (437)
63 3twr_A Tankyrase-2; ankyrin re 99.9 1.4E-22 4.6E-27 188.7 14.3 132 32-187 33-164 (165)
64 3kea_A K1L; tropism, ANK repea 99.9 3.3E-23 1.1E-27 211.9 11.0 133 32-189 22-155 (285)
65 3utm_A Tankyrase-1; tankyrase, 99.9 3.3E-22 1.1E-26 205.4 16.7 159 30-214 80-291 (351)
66 3v31_A Ankyrin repeat family A 99.9 5.1E-22 1.7E-26 185.2 16.1 133 31-186 26-158 (167)
67 2etb_A Transient receptor pote 99.9 9.6E-23 3.3E-27 203.0 11.8 149 41-214 2-183 (256)
68 3aaa_C Myotrophin, protein V-1 99.9 2.8E-22 9.7E-27 178.4 13.4 119 38-179 4-122 (123)
69 1ycs_B 53BP2, P53BP2; ankyrin 99.9 8.2E-23 2.8E-27 203.2 10.8 159 33-215 30-193 (239)
70 3eu9_A Huntingtin-interacting 99.9 5.7E-22 1.9E-26 192.8 16.2 153 34-215 2-154 (240)
71 1wdy_A 2-5A-dependent ribonucl 99.9 8.9E-22 3E-26 196.0 17.9 154 39-214 3-159 (285)
72 1ycs_B 53BP2, P53BP2; ankyrin 99.9 7.7E-23 2.6E-27 203.4 9.7 146 39-215 3-151 (239)
73 2rfm_A Putative ankyrin repeat 99.9 2.9E-22 9.9E-27 191.3 13.0 133 31-186 58-190 (192)
74 4g8k_A 2-5A-dependent ribonucl 99.9 6.8E-22 2.3E-26 205.1 16.6 169 31-215 115-285 (337)
75 2pnn_A Transient receptor pote 99.9 1.2E-22 4E-27 204.6 10.5 156 35-215 7-196 (273)
76 3eu9_A Huntingtin-interacting 99.9 8.2E-22 2.8E-26 191.7 15.9 156 31-214 32-188 (240)
77 3ehr_A Osteoclast-stimulating 99.9 1.2E-22 4.2E-27 198.6 9.8 132 37-190 69-200 (222)
78 1ikn_D Protein (I-kappa-B-alph 99.9 6.8E-22 2.3E-26 194.5 14.9 162 29-212 66-228 (236)
79 1awc_B Protein (GA binding pro 99.9 7E-22 2.4E-26 182.2 13.9 123 37-182 30-152 (153)
80 1bd8_A P19INK4D CDK4/6 inhibit 99.9 6.6E-22 2.3E-26 182.0 12.5 127 33-184 28-154 (156)
81 2b0o_E UPLC1; arfgap, structur 99.9 9E-22 3.1E-26 204.3 13.4 149 37-215 147-298 (301)
82 2fo1_E LIN-12 protein; beta-ba 99.9 4.7E-22 1.6E-26 210.9 11.4 165 32-215 115-291 (373)
83 3t8k_A Uncharacterized protein 99.9 8.1E-22 2.8E-26 190.8 9.9 136 35-186 31-181 (186)
84 3jxi_A Vanilloid receptor-rela 99.9 1.1E-21 3.7E-26 195.5 10.4 152 39-215 3-188 (260)
85 3deo_A Signal recognition part 99.8 5E-21 1.7E-25 182.4 13.0 112 38-168 41-152 (183)
86 1d9s_A Cyclin-dependent kinase 99.8 7.6E-21 2.6E-25 172.3 10.9 117 82-215 6-123 (136)
87 3c5r_A BARD-1, BRCA1-associate 99.8 1.2E-20 3.9E-25 170.8 11.3 115 84-214 6-120 (137)
88 3ui2_A Signal recognition part 99.8 1.4E-20 4.7E-25 188.4 12.9 132 38-188 42-185 (244)
89 4hbd_A KN motif and ankyrin re 99.8 1E-20 3.6E-25 192.7 10.6 132 32-186 136-273 (276)
90 3lvq_E ARF-GAP with SH3 domain 99.8 3.9E-20 1.3E-24 204.4 15.9 137 37-190 128-267 (497)
91 1dcq_A PYK2-associated protein 99.8 6.1E-20 2.1E-24 188.3 14.0 136 37-189 126-264 (278)
92 3jue_A Arfgap with coiled-coil 99.8 3.8E-20 1.3E-24 198.1 12.4 156 34-214 192-348 (368)
93 3kea_A K1L; tropism, ANK repea 99.8 1.3E-20 4.5E-25 192.6 8.2 145 39-214 60-206 (285)
94 3aaa_C Myotrophin, protein V-1 99.8 6E-20 2.1E-24 163.3 10.3 113 85-213 4-116 (123)
95 2jab_A H10-2-G3; HER2, darpin, 99.8 6.9E-20 2.4E-24 166.0 10.6 115 85-215 11-125 (136)
96 2l6b_A NR1C; ankyrin, consensu 99.8 4.5E-20 1.5E-24 161.9 8.4 109 36-163 4-112 (115)
97 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.6E-19 5.6E-24 153.1 11.0 93 87-188 1-93 (93)
98 2vge_A RELA-associated inhibit 99.8 1.3E-19 4.5E-24 180.2 12.0 131 57-214 1-134 (229)
99 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.4E-19 8.1E-24 152.1 11.6 93 40-151 1-93 (93)
100 1sw6_A Regulatory protein SWI6 99.8 1.3E-20 4.6E-25 196.4 4.6 182 26-215 37-295 (327)
101 1n0r_A 4ANK, 4 ankyrin repeats 99.8 4.4E-19 1.5E-23 155.8 12.4 113 87-215 1-113 (126)
102 1bi7_B P16INK4A, MTS1, multipl 99.8 2.2E-19 7.6E-24 166.4 9.2 115 84-215 8-123 (156)
103 3ehr_A Osteoclast-stimulating 99.8 4.2E-19 1.4E-23 173.4 8.9 116 83-214 68-184 (222)
104 2l6b_A NR1C; ankyrin, consensu 99.8 6.5E-19 2.2E-23 154.5 8.3 99 83-190 4-102 (115)
105 3deo_A Signal recognition part 99.8 3.8E-19 1.3E-23 169.4 7.0 115 84-215 40-155 (183)
106 3ui2_A Signal recognition part 99.7 3E-18 1E-22 171.4 8.0 114 85-215 42-156 (244)
107 2b0o_E UPLC1; arfgap, structur 99.7 2.9E-18 9.9E-23 177.9 7.6 110 37-171 186-298 (301)
108 2aja_A Ankyrin repeat family p 99.7 1.6E-19 5.3E-24 193.9 -2.2 143 37-214 88-236 (376)
109 2zgd_A 3 repeat synthetic anky 99.7 8.1E-17 2.8E-21 141.2 9.1 93 81-182 17-109 (110)
110 3lvq_E ARF-GAP with SH3 domain 99.7 1.2E-16 4.1E-21 176.5 11.6 106 38-168 168-276 (497)
111 2zgd_A 3 repeat synthetic anky 99.7 3.2E-16 1.1E-20 137.4 10.6 94 33-145 16-109 (110)
112 1dcq_A PYK2-associated protein 99.7 2.5E-16 8.6E-21 161.4 11.3 100 34-152 162-264 (278)
113 3jue_A Arfgap with coiled-coil 99.7 2.4E-16 8.1E-21 168.7 11.4 113 87-215 198-313 (368)
114 2aja_A Ankyrin repeat family p 99.6 6.2E-18 2.1E-22 181.4 -4.5 127 36-190 123-252 (376)
115 1m9o_A Tristetraproline; Cys3H 99.4 6E-14 2E-18 117.2 2.0 61 299-360 8-76 (77)
116 3d2q_A Muscleblind-like protei 99.0 5E-11 1.7E-15 98.0 -0.8 62 302-363 5-69 (70)
117 1m9o_A Tristetraproline; Cys3H 98.6 1.3E-08 4.6E-13 84.5 2.9 62 266-328 10-76 (77)
118 2cqe_A KIAA1064 protein; CCCH 98.6 2.6E-08 9E-13 87.0 4.5 49 300-360 10-62 (98)
119 2e5s_A Otthump00000018578; ZF- 98.5 4.9E-09 1.7E-13 91.7 -2.5 63 301-363 18-83 (98)
120 2d9m_A Zinc finger CCCH-type d 98.5 8.1E-09 2.8E-13 83.7 -1.9 50 291-343 11-63 (69)
121 2d9n_A Cleavage and polyadenyl 98.5 4E-08 1.4E-12 82.1 2.0 59 297-362 4-65 (77)
122 2rhk_C Cleavage and polyadenyl 98.3 1.1E-07 3.6E-12 78.6 -0.1 56 300-362 13-71 (72)
123 3d2n_A Muscleblind-like protei 98.1 7.1E-07 2.4E-11 75.6 1.2 63 300-364 6-71 (83)
124 2d9m_A Zinc finger CCCH-type d 97.8 2.6E-06 9.1E-11 69.1 -0.6 36 329-364 10-49 (69)
125 2rpp_A Muscleblind-like protei 97.8 3.6E-06 1.2E-10 72.2 -0.1 62 300-363 14-78 (89)
126 2cqe_A KIAA1064 protein; CCCH 97.5 5.5E-05 1.9E-09 65.9 3.3 47 266-327 11-61 (98)
127 2d9n_A Cleavage and polyadenyl 97.3 6.1E-05 2.1E-09 62.7 1.9 61 266-344 8-72 (77)
128 3d2q_A Muscleblind-like protei 97.2 7.3E-05 2.5E-09 61.1 0.9 54 273-330 14-68 (70)
129 2e5s_A Otthump00000018578; ZF- 96.6 0.00033 1.1E-08 61.0 0.2 60 267-330 19-82 (98)
130 2rhk_C Cleavage and polyadenyl 96.3 0.0009 3.1E-08 54.9 0.8 52 267-329 15-70 (72)
131 2lhn_A Nuclear polyadenylated 94.5 0.0024 8.3E-08 53.4 0.0 64 269-360 10-74 (80)
132 3d2n_A Muscleblind-like protei 94.8 0.0086 3E-07 50.4 1.4 51 273-329 17-68 (83)
133 2lhn_A Nuclear polyadenylated 93.2 0.0083 2.9E-07 50.2 0.0 42 303-357 9-50 (80)
134 2rpp_A Muscleblind-like protei 92.9 0.022 7.6E-07 48.5 0.5 50 273-328 25-75 (89)
135 2fc6_A Nuclear, target of EGR1 89.4 0.069 2.4E-06 40.3 0.0 27 301-327 18-45 (50)
136 2fc6_A Nuclear, target of EGR1 84.3 0.32 1.1E-05 36.7 1.1 24 336-359 18-45 (50)
137 3u1l_A PRE-mRNA-splicing facto 78.6 0.34 1.2E-05 48.5 -0.6 24 303-326 70-93 (240)
138 3u9g_A Zinc finger CCCH-type a 67.1 3 0.0001 41.1 3.0 45 300-360 148-199 (229)
139 3v33_A Ribonuclease ZC3H12A; r 63.3 1.8 6.1E-05 42.8 0.5 32 292-325 181-212 (223)
140 3v33_A Ribonuclease ZC3H12A; r 23.5 17 0.00058 35.8 0.0 23 337-359 191-214 (223)
141 4g26_A Pentatricopeptide repea 22.9 1.3E+02 0.0046 32.4 7.1 130 40-190 62-209 (501)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=7.2e-27 Score=223.15 Aligned_cols=143 Identities=34% Similarity=0.501 Sum_probs=135.3
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCC
Q 006947 43 ASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGND 122 (624)
Q Consensus 43 TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~ 122 (624)
+.|+.||..|++++|+.||+ .|+|+|.. |.+|+||||+|+..|+.+++++||+. |+|++.+ +.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~-------------d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~-d~~ 69 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE-NGADVNAS-------------DSDGRTPLHHAAENGHKEVVKLLISK-GADVNAK-DSD 69 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTT
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhh-ccC
Confidence 57999999999999999999 99999987 68999999999999999999999998 9999999 999
Q ss_pred CChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCC
Q 006947 123 KSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNS 202 (624)
Q Consensus 123 G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~ 202 (624)
|+||||+|+..|+ .++|++||++|+|+|.+|.+|+||||+|+. .+..+++++|++.|++++ ..+..
T Consensus 70 g~TpLh~A~~~g~---~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~gad~~-------~~d~~ 135 (169)
T 4gpm_A 70 GRTPLHHAAENGH---KEVVKLLISKGADVNAKDSDGRTPLHHAAE----NGHKEVVKLLISKGADVN-------TSDSD 135 (169)
T ss_dssp SCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------CCCTT
T ss_pred CCCHHHHHHHcCC---HHHHHHHHHCcCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc-------ccCCC
Confidence 9999999999999 999999999999999999999999999999 455678999999999998 78889
Q ss_pred CCChhhhhhhcCC
Q 006947 203 NSPPLSPALENGS 215 (624)
Q Consensus 203 g~TpL~lA~e~Gs 215 (624)
|.|||++|++.|.
T Consensus 136 G~TpL~~A~~~g~ 148 (169)
T 4gpm_A 136 GRTPLDLAREHGN 148 (169)
T ss_dssp SCCHHHHHHHTTC
T ss_pred CCCHHHHHHHcCC
Confidence 9999999999984
No 2
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.94 E-value=4.3e-26 Score=217.76 Aligned_cols=138 Identities=33% Similarity=0.431 Sum_probs=125.8
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHH
Q 006947 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILS 109 (624)
Q Consensus 30 d~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~ 109 (624)
..-+++..|.+|.||||.|+..++.++++.|++ .|++++.. |.+|+||||+||..|+.++|++||+
T Consensus 26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~-------------d~~g~TpLh~A~~~g~~~~v~~Ll~ 91 (169)
T 4gpm_A 26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAK-------------DSDGRTPLHHAAENGHKEVVKLLIS 91 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhh-------------ccCCCCHHHHHHHcCCHHHHHHHHH
Confidence 345788999999999999999999999999999 99999987 6899999999999999999999999
Q ss_pred hcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCC
Q 006947 110 ESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSV 189 (624)
Q Consensus 110 ~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv 189 (624)
+ |+|||.+ +.+|+||||+|+..|+ .++|++||++|+|++.+|..|+||||+|+. .+..+++++|+++|+++
T Consensus 92 ~-gadvn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~----~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 92 K-GADVNAK-DSDGRTPLHHAAENGH---KEVVKLLISKGADVNTSDSDGRTPLDLARE----HGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp T-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHTC----
T ss_pred C-cCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCc
Confidence 9 9999999 9999999999999999 999999999999999999999999999999 45568999999999998
Q ss_pred c
Q 006947 190 E 190 (624)
Q Consensus 190 ~ 190 (624)
+
T Consensus 163 e 163 (169)
T 4gpm_A 163 E 163 (169)
T ss_dssp -
T ss_pred C
Confidence 7
No 3
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.93 E-value=5.2e-26 Score=232.01 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=145.2
Q ss_pred ccCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHH
Q 006947 29 VDMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLIL 108 (624)
Q Consensus 29 ~d~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL 108 (624)
...-+++..|.+|.||||+||..|+.++|+.||+ .+++++.. +.+|.||||+|+..++.+++++||
T Consensus 74 ~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~~a~~~~~-------------~~~g~t~l~~a~~~~~~~~~~~Ll 139 (269)
T 4b93_B 74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGAR-------------NADQAVPLHLACQQGHFQVVKCLL 139 (269)
T ss_dssp -CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCcCcc-------------CCCCCCccccccccChHHHHHHHH
Confidence 3445788999999999999999999999999999 89998877 689999999999999999999999
Q ss_pred HhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCC
Q 006947 109 SESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGS 188 (624)
Q Consensus 109 ~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gad 188 (624)
+. |+++|.+ +..|+||||+|+..|+ .++|++||++|+|+|.+|..|+||||+|+.. +..+++++|+++|++
T Consensus 140 ~~-g~~~n~~-d~~g~TpL~~A~~~g~---~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~----g~~~~v~~Ll~~Gad 210 (269)
T 4b93_B 140 DS-NAKPNKK-DLSGNTPLIYACSGGH---HELVALLLQHGASINASNNKGNTALHEAVIE----KHVFVVELLLLHGAS 210 (269)
T ss_dssp HT-TCCSCCC-CTTCCCHHHHHHHTTC---GGGHHHHHHTTCCTTCBCTTSCBHHHHHHHT----TCHHHHHHHHHTTCC
T ss_pred HC-CCCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHHCCCCCCccccCCCcHHHHHHHc----CCHHHHHHHHHCCCC
Confidence 98 9999999 9999999999999999 9999999999999999999999999999994 556789999999999
Q ss_pred CcccccccccccCCCCChhhhhhhcC
Q 006947 189 VERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 189 v~~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
++ ..+..|.|||++|+++|
T Consensus 211 ~~-------~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 211 VQ-------VLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp SC-------CCCTTSCCSGGGSCTTC
T ss_pred CC-------CcCCCCCCHHHHHHhCC
Confidence 98 78899999999998877
No 4
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.93 E-value=2e-25 Score=218.45 Aligned_cols=170 Identities=19% Similarity=0.216 Sum_probs=148.7
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
..+++..+.+|.||||.||..|+.++|+.|++ .|+++... .....|.+|.||||+|+..|+.++|++||++
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 97 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLME-AAPELVFE--------PMTSELYEGQTALHIAVINQNVNLVRALLAR 97 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGC--------CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCchhccc--------cccccCCCCcCHHHHHHHcCCHHHHHHHHhC
Confidence 45678889999999999999999999999999 77765322 1233478999999999999999999999999
Q ss_pred cCCCccccCCC-------------CCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHH
Q 006947 111 SGADVNLSCGN-------------DKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRL 177 (624)
Q Consensus 111 ~GADVN~~~d~-------------~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~ 177 (624)
|++++.. +. .|.||||+|+..|+ .++|++|+++|+|++.+|..|+||||+|+..++.+....
T Consensus 98 -g~~~~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~ 172 (232)
T 2rfa_A 98 -GASVSAR-ATGSVFHYRPHNLIYYGEHPLSFAACVGS---EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQ 172 (232)
T ss_dssp -TCCTTCC-CCSGGGSCCTTCSCCCCSSHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHH
T ss_pred -CCCCCcc-cCCcceeecccccccCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHH
Confidence 9999987 54 79999999999999 999999999999999999999999999999998888888
Q ss_pred HHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 178 TLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 178 lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
++++|++.|++... ..+....+..|.|||++|++.|.
T Consensus 173 i~~~Ll~~g~~~~~-~~~~~~~~~~g~tpl~~A~~~g~ 209 (232)
T 2rfa_A 173 MYNLLLSYDGGDHL-KSLELVPNNQGLTPFKLAGVEGN 209 (232)
T ss_dssp HHHHHHHTTCSCSS-CCGGGCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHhcCCchhh-hhhhccCCCCCCCHHHHHHHcCC
Confidence 99999999998741 12223678899999999999994
No 5
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=1.1e-25 Score=215.23 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=142.4
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCC
Q 006947 34 LTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGA 113 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GA 113 (624)
++.+|..|.|+||.||..|+.++|+.|++ .|++++.. |..|.||||+|+..|+.++|++|+++ |+
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~ 92 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVE-NFDKLEDK-------------DIEGSTALIWAVKNNRLGIAEKLLSK-GS 92 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHH-HHCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-TC
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHH-hccccccc-------------cccCccHHHHHHHcCCHHHHHHHHHC-CC
Confidence 46689999999999999999999999999 78888876 68899999999999999999999999 99
Q ss_pred CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccc
Q 006947 114 DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNL 193 (624)
Q Consensus 114 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~ 193 (624)
+++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .+..+++++|++.|++++
T Consensus 93 ~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~--- 161 (192)
T 2rfm_A 93 NVNTK-DFSGKTPLMWSIIFGY---SEMSYFLLEHGANVNDRNLEGETPLIVASK----YGRSEIVKKLLELGADIS--- 161 (192)
T ss_dssp CTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCTT---
T ss_pred CCCCC-CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCC---
Confidence 99999 9999999999999999 999999999999999999999999999998 556689999999999988
Q ss_pred cccccccCCCCChhhhhhhcCC
Q 006947 194 RVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 194 ~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
..+..|.|||++|+..|.
T Consensus 162 ----~~~~~g~t~l~~A~~~~~ 179 (192)
T 2rfm_A 162 ----ARDLTGLTAEASARIFGR 179 (192)
T ss_dssp ----CBCTTSCBHHHHHHHTTC
T ss_pred ----CcCCCCCCHHHHHHHhCc
Confidence 778899999999999884
No 6
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.93 E-value=5.3e-25 Score=210.48 Aligned_cols=158 Identities=23% Similarity=0.227 Sum_probs=146.9
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006947 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~G 112 (624)
+++..+.+|.||||.|+..|+.++|+.|++ .|++++.. |..|.||||+|+..|+.+++++|++..+
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 96 (201)
T 3hra_A 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQ-------------NSISDSPYLYAGAQGRTEILAYMLKHAT 96 (201)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 678889999999999999999999999999 89999887 6899999999999999999999997768
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCC-CCCCCcCCCCCcHHHHHhcCCC-hhhHHHHHHHHHHCCCCCc
Q 006947 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG-ADPNFVDAKGHHPVDVIVVPPK-FQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 113 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~G-AD~n~~D~~G~TPLhlAa~~g~-~~~~~~lLe~LL~~gadv~ 190 (624)
++++.. +..|.||||+|+..|+ .++|++|++.| ++++.+|..|+||||+|+..+. ..+..+++++|++.|++++
T Consensus 97 ~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 97 PDLNKH-NRYGGNALIPAAEKGH---IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp CCTTCC-CTTSCCSHHHHHHTTC---HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred cccccc-cCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 999998 9999999999999999 99999999999 9999999999999999998655 4556899999999999998
Q ss_pred ccccccccccCCCCChhhhhhhcCC
Q 006947 191 RNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 191 ~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
..+..|.|||++|++.|.
T Consensus 173 -------~~~~~g~t~l~~A~~~~~ 190 (201)
T 3hra_A 173 -------IKDNSGRTAMDYANQKGY 190 (201)
T ss_dssp -------CCCTTSCCHHHHHHHHTC
T ss_pred -------ccCCCCCCHHHHHHHcCC
Confidence 778899999999999984
No 7
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.92 E-value=8.7e-25 Score=218.70 Aligned_cols=166 Identities=22% Similarity=0.236 Sum_probs=116.0
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccc--------------
Q 006947 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQ-------------- 78 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~~~-------------- 78 (624)
.++..+..|.||||+||..|+.++|+.||+ .|++++..+ +++..+
T Consensus 37 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 115 (282)
T 1oy3_D 37 YLDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115 (282)
T ss_dssp GGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------
T ss_pred cccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhc
Confidence 377888899999999999999999999998 889888653 111111
Q ss_pred ---------------------------------cCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCCh
Q 006947 79 ---------------------------------KGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKST 125 (624)
Q Consensus 79 ---------------------------------~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~T 125 (624)
...+..+..|.||||+|+..|+.++|++||++ |++++...+..|.|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t 194 (282)
T 1oy3_D 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRT 194 (282)
T ss_dssp ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCC
T ss_pred ccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcC
Confidence 12445567788888888888888888888877 78888772244888
Q ss_pred HHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCC
Q 006947 126 ALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSP 205 (624)
Q Consensus 126 PLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~T 205 (624)
|||+|+..|+ .++|++||++|+|++.+|..|+||||+|+. .+..+++++|+++|++++ ..+..|.|
T Consensus 195 pL~~A~~~~~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~-------~~~~~g~t 260 (282)
T 1oy3_D 195 PLHLAVEAQA---ASVLELLLKAGADPTARMYGGRTPLGSALL----RPNPILARLLRAHGAPEP-------EDGGDKLS 260 (282)
T ss_dssp HHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHT----SSCHHHHHHHHHTTCCCC-------CCC-----
T ss_pred HHHHHHHcCC---HHHHHHHHHcCCCCcccccCCCCHHHHHHH----cCCcHHHHHHHHcCCCcC-------cCCCcccc
Confidence 8888888888 888888888888888888888888888887 444567778888888877 67777888
Q ss_pred hhhhhhhcC
Q 006947 206 PLSPALENG 214 (624)
Q Consensus 206 pL~lA~e~G 214 (624)
||++|....
T Consensus 261 pl~~a~~~~ 269 (282)
T 1oy3_D 261 PCSSSGSDS 269 (282)
T ss_dssp ---------
T ss_pred cccccCCcc
Confidence 888776654
No 8
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.92 E-value=1.3e-24 Score=204.13 Aligned_cols=149 Identities=28% Similarity=0.377 Sum_probs=137.1
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcc
Q 006947 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVN 116 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN 116 (624)
....+.++|++||..|++++|+.|++ .|+++|.. |.+|.||||+|+..|+.++|++||++ |++++
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~ 74 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMA-NGADVNAE-------------DASGWTPLHLAAFNGHLEIVEVLLKN-GADVN 74 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTT
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence 45567899999999999999999999 89999876 68999999999999999999999998 99999
Q ss_pred ccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccccccc
Q 006947 117 LSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVS 196 (624)
Q Consensus 117 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~ 196 (624)
.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+. .+..+++++|+++|++++
T Consensus 75 ~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~------ 140 (169)
T 2y1l_E 75 AV-DHAGMTPLRLAALFGH---LEIVEVLLKNGADVNANDMEGHTPLHLAAM----FGHLEIVEVLLKNGADVN------ 140 (169)
T ss_dssp CC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT------
T ss_pred cc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC------
Confidence 99 9999999999999999 999999999999999999999999999999 455678999999999987
Q ss_pred ccccCCCCChhhhhhhcCC
Q 006947 197 TTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 197 ~a~~~~g~TpL~lA~e~Gs 215 (624)
..+..|.|||++|++.|.
T Consensus 141 -~~~~~g~t~l~~A~~~~~ 158 (169)
T 2y1l_E 141 -AQDKFGKTAFDISIDNGN 158 (169)
T ss_dssp -CCCTTSCCHHHHHHHTTC
T ss_pred -CcCCCCCCHHHHHHHhCC
Confidence 778899999999999984
No 9
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.92 E-value=4.9e-25 Score=205.63 Aligned_cols=146 Identities=29% Similarity=0.358 Sum_probs=136.6
Q ss_pred cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccC
Q 006947 40 DAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSC 119 (624)
Q Consensus 40 dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~ 119 (624)
+|.|+||.||..|++++|+.|++ .+.+++.. |..|.||||+|+..|+.++|++|+++ |++++..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~- 65 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIE-QENVINHT-------------DEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLL- 65 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHH-HSSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCcchHHHHHHCCCHHHHHHHHH-cCCCcCCC-------------CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCc-
Confidence 57899999999999999999999 78888876 68999999999999999999999999 9999998
Q ss_pred CCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccc
Q 006947 120 GNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTT 199 (624)
Q Consensus 120 d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~ 199 (624)
+..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+. .+..+++++|++.|++++ ..
T Consensus 66 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~-------~~ 131 (167)
T 3v31_A 66 GKGRESALSLACSKGY---TDIVKMLLDCGVDVNEYDWNGGTPLLYAVH----GNHVKCVKMLLESGADPT-------IE 131 (167)
T ss_dssp CTTCCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------CC
T ss_pred CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCcCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC-------Cc
Confidence 9999999999999999 999999999999999999999999999998 455678899999999988 67
Q ss_pred cCCCCChhhhhhhcCC
Q 006947 200 SNSNSPPLSPALENGS 215 (624)
Q Consensus 200 ~~~g~TpL~lA~e~Gs 215 (624)
+..|.|||++|++.|.
T Consensus 132 ~~~g~t~l~~A~~~~~ 147 (167)
T 3v31_A 132 TDSGYNSMDLAVALGY 147 (167)
T ss_dssp CTTSCCHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHcCc
Confidence 8899999999999984
No 10
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=9e-25 Score=203.47 Aligned_cols=148 Identities=26% Similarity=0.337 Sum_probs=134.2
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCc
Q 006947 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADV 115 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADV 115 (624)
+.+.++.++||.|+..|+++.|+.|++..+.+++.. +..|.||||+|+..|+.++|++|+++ |+++
T Consensus 3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~ 68 (165)
T 3twr_A 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-------------EGRQSTPLHFAAGYNRVSVVEYLLQH-GADV 68 (165)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-------------TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-------------ccCCCCHHHHHHHcChHHHHHHHHhc-CCCC
Confidence 457789999999999999999999999666666655 67899999999999999999999999 9999
Q ss_pred cccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccc
Q 006947 116 NLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRV 195 (624)
Q Consensus 116 N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l 195 (624)
+.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|++.|++++
T Consensus 69 ~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~----- 135 (165)
T 3twr_A 69 HAK-DKGGLVPLHNACSYGH---YEVAELLVKHGAVVNVADLWKFTPLHEAAA----KGKYEICKLLLQHGADPT----- 135 (165)
T ss_dssp TCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT-----
T ss_pred Ccc-CCCCCCHHHHHHHcCc---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCc-----
Confidence 999 9999999999999999 999999999999999999999999999999 455678999999999988
Q ss_pred cccccCCCCChhhhhhh
Q 006947 196 STTTSNSNSPPLSPALE 212 (624)
Q Consensus 196 ~~a~~~~g~TpL~lA~e 212 (624)
..+..|.|||++|.+
T Consensus 136 --~~~~~g~t~l~~a~~ 150 (165)
T 3twr_A 136 --KKNRDGNTPLDLVKD 150 (165)
T ss_dssp --CCCTTSCCTGGGSCT
T ss_pred --ccCCCCCChhHhHhc
Confidence 788899999999876
No 11
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.92 E-value=9.7e-25 Score=218.09 Aligned_cols=163 Identities=20% Similarity=0.208 Sum_probs=133.2
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------ccccccc-CCccccCCCCchHHH
Q 006947 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQK-GSKQMVNEQRTPLMV 94 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~~~~-~~~~~D~~G~TPLhl 94 (624)
..+.+|.|+||.||..|+.++|+.||+ .|++++..+ +++..+. +.+..+.+|.||||+
T Consensus 52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~ 130 (253)
T 1yyh_A 52 QTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 130 (253)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHH
Confidence 457899999999999999999999999 899988764 2223333 556677788888888
Q ss_pred HHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhh
Q 006947 95 AATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQD 174 (624)
Q Consensus 95 AA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~ 174 (624)
|+..|+.++|++||+. |+++|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+
T Consensus 131 A~~~~~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~----~~ 201 (253)
T 1yyh_A 131 AARLAVEGMLEDLINS-HADVNAV-DDLGKSALHWAAAVNN---VDAAVVLLKNGANKDMQNNREETPLFLAAR----EG 201 (253)
T ss_dssp HHHHTCSSHHHHHHHT-TCCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----HT
T ss_pred HHHcChHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----CC
Confidence 8888888888888887 8888887 7888888888888888 888888888888888888888888888887 55
Q ss_pred HHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 175 VRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 175 ~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
..+++++|+++|++++ ..+..|.|||++|+++|.
T Consensus 202 ~~~~v~~Ll~~ga~~~-------~~d~~g~tpl~~A~~~g~ 235 (253)
T 1yyh_A 202 SYETAKVLLDHFANRD-------ITDHMDRLPRDIAQERMH 235 (253)
T ss_dssp CHHHHHHHHHTTCCTT-------CCCTTCCCHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCCcc-------ccccCCCCHHHHHHHcCC
Confidence 5677888888888877 677788888888888884
No 12
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=1.3e-24 Score=200.61 Aligned_cols=145 Identities=24% Similarity=0.294 Sum_probs=133.9
Q ss_pred cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccC
Q 006947 40 DAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSC 119 (624)
Q Consensus 40 dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~ 119 (624)
|..++|+.|+..|+.++|+.|++ .|.+++. +..|.||||+|+..|+.++|++|++. |++++..
T Consensus 1 d~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~--------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~- 63 (153)
T 1awc_B 1 DLGKKLLEAARAGQDDEVRILMA-NGAPFTT--------------DWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDAR- 63 (153)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH-HTCCCCC--------------CTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC-
T ss_pred CccHHHHHHHHcCCHHHHHHHHH-cCCCCCc--------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-
Confidence 35689999999999999999999 7777652 57899999999999999999999988 9999998
Q ss_pred CCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccc
Q 006947 120 GNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTT 199 (624)
Q Consensus 120 d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~ 199 (624)
+..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|++.|++++ ..
T Consensus 64 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~-------~~ 129 (153)
T 1awc_B 64 TKVDRTPLHMAASEGH---ANIVEVLLKHGADVNAKDMLKMTALHWATE----HNHQEVVELLIKYGADVH-------TQ 129 (153)
T ss_dssp CTTCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------CC
T ss_pred CCCCCCHHHHHHHcCh---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc-------cc
Confidence 9999999999999999 999999999999999999999999999999 455678999999999988 77
Q ss_pred cCCCCChhhhhhhcCC
Q 006947 200 SNSNSPPLSPALENGS 215 (624)
Q Consensus 200 ~~~g~TpL~lA~e~Gs 215 (624)
+..|.|||++|+..|.
T Consensus 130 ~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 130 SKFCKTAFDISIDNGN 145 (153)
T ss_dssp CTTSCCHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHcCC
Confidence 8899999999999984
No 13
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=1.2e-24 Score=205.86 Aligned_cols=147 Identities=20% Similarity=0.266 Sum_probs=132.7
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcccc
Q 006947 39 DDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLS 118 (624)
Q Consensus 39 ~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~ 118 (624)
.++.++||.||..|++++|+.||+..+.+++.. |..|.||||+||..|+.++|++||+. |++++.+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~ 68 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-------------DDHGFSPLHWACREGRSAVVEMLIMR-GARINVM 68 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCc
Confidence 467889999999999999999999668888876 68999999999999999999999999 9999998
Q ss_pred CCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccccccccc
Q 006947 119 CGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTT 198 (624)
Q Consensus 119 ~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a 198 (624)
+..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+.. +..+++++|++.|++++ .
T Consensus 69 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~~-------~ 133 (179)
T 3f6q_A 69 -NRGDDTPLHLAASHGH---RDIVQKLLQYKADINAVNEHGNVPLHYACFW----GQDQVAEDLVANGALVS-------I 133 (179)
T ss_dssp -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCSS-------B
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCcc-------h
Confidence 9999999999999999 9999999999999999999999999999984 45678999999999988 7
Q ss_pred ccCCCCChhhhhhhcC
Q 006947 199 TSNSNSPPLSPALENG 214 (624)
Q Consensus 199 ~~~~g~TpL~lA~e~G 214 (624)
.+..|.|||++|+..+
T Consensus 134 ~~~~g~tpl~~A~~~~ 149 (179)
T 3f6q_A 134 CNKYGEMPVDKAKAPL 149 (179)
T ss_dssp CCTTSCCGGGGSCHHH
T ss_pred hccCCCCcHHHHHHHH
Confidence 7889999999998776
No 14
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.92 E-value=1.8e-24 Score=211.86 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=104.2
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------ccccccc----CCccccC
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQK----GSKQMVN 86 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~~~~----~~~~~D~ 86 (624)
..+++..+..|.||||.|+..|+.++++.|++ .|++++..+ +++..+. +.+..|.
T Consensus 36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~ 114 (241)
T 1k1a_A 36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 114 (241)
T ss_dssp TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT
T ss_pred CCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCc
Confidence 45677888889999999999999999999998 888887653 1111111 3344455
Q ss_pred CCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 006947 87 EQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVI 166 (624)
Q Consensus 87 ~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlA 166 (624)
.|.||||+|+..|+.+++++|++. |++++...+..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|
T Consensus 115 ~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 190 (241)
T 1k1a_A 115 DGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNS---LSMVQLLLQHGANVNAQMYSGSSALHSA 190 (241)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 556666666666666666666655 566555511455666666666555 5666666666666666666666666666
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006947 167 VVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 167 a~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
+. .+..+++++|++.|++++ ..+..|.|||++|++.|
T Consensus 191 ~~----~~~~~~v~~Ll~~ga~~~-------~~~~~g~tpl~~A~~~~ 227 (241)
T 1k1a_A 191 SG----RGLLPLVRTLVRSGADSS-------LKNCHNDTPLMVARSRR 227 (241)
T ss_dssp HH----HTCHHHHHHHHHTTCCTT-------CCCTTSCCTTTTCSSHH
T ss_pred HH----cCCHHHHHHHHhcCCCCC-------CcCCCCCCHHHHHHhcC
Confidence 55 333445555555555555 44555566666655554
No 15
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.92 E-value=1.7e-24 Score=202.88 Aligned_cols=146 Identities=29% Similarity=0.412 Sum_probs=132.4
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCC
Q 006947 41 AFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCG 120 (624)
Q Consensus 41 g~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d 120 (624)
+.++||.||..|+++.|+.||+..+..++.. |..|.||||+|+..|+.++|++||++ |++++.. +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~ 66 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-------------DERGFTPLIWASAFGEIETVRFLLEW-GADPHIL-A 66 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCC-C
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhh-c
Confidence 4688999999999999999999433336655 68999999999999999999999999 9999999 9
Q ss_pred CCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccccccccccc
Q 006947 121 NDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTS 200 (624)
Q Consensus 121 ~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~ 200 (624)
..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|++.|++++ ..+
T Consensus 67 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~-------~~~ 132 (172)
T 3v30_A 67 KERESALSLASTGGY---TDIVGLLLERDVDINIYDWNGGTPLLYAVR----GNHVKCVEALLARGADLT-------TEA 132 (172)
T ss_dssp TTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------CCC
T ss_pred ccCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc-------ccC
Confidence 999999999999999 999999999999999999999999999998 456678899999999988 778
Q ss_pred CCCCChhhhhhhcCC
Q 006947 201 NSNSPPLSPALENGS 215 (624)
Q Consensus 201 ~~g~TpL~lA~e~Gs 215 (624)
..|.|||++|+..|.
T Consensus 133 ~~g~t~l~~A~~~~~ 147 (172)
T 3v30_A 133 DSGYTPMDLAVALGY 147 (172)
T ss_dssp TTSCCHHHHHHHHTC
T ss_pred CCCCCHHHHHHHhCc
Confidence 899999999999984
No 16
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=7.1e-25 Score=199.00 Aligned_cols=133 Identities=27% Similarity=0.308 Sum_probs=124.4
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhc
Q 006947 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSES 111 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~ 111 (624)
.+++..+..|.|+||.|+..|+.++|+.||+ .|++++.. |..|+||||+|+. |+.++|++||++
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~-~~~~~v~~Ll~~- 66 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNAL-------------NRFGRRPIQVMMM-GSAQVAELLLLH- 66 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCTTTTTSTT-SCHHHHHHHHHH-
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCc-------------CCCCCCHHHHHHc-CCHHHHHHHHHC-
Confidence 4678899999999999999999999999999 89999877 6899999999999 999999999998
Q ss_pred CCCccccCCCC-CChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCC
Q 006947 112 GADVNLSCGND-KSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGS 188 (624)
Q Consensus 112 GADVN~~~d~~-G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gad 188 (624)
|++++.+ +.. |.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|+++|++
T Consensus 67 g~~~~~~-~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~----~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 67 GAEPNCA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVCDAWGRLPVDLAEE----QGHRDIARYLHAATGD 136 (136)
T ss_dssp TCCSSCC-BTTTTBCHHHHHHHHTC---HHHHHHHHHTCCCCCCCSSSSSCHHHHHHH----HTCHHHHHHHHHHHCC
T ss_pred CCCCCCc-CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCC
Confidence 9999999 888 9999999999999 999999999999999999999999999998 5567888999888875
No 17
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.91 E-value=1.9e-24 Score=199.99 Aligned_cols=146 Identities=24% Similarity=0.258 Sum_probs=133.5
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcccc
Q 006947 39 DDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLS 118 (624)
Q Consensus 39 ~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~ 118 (624)
+...|+||.|+..|++++|+.||+ .|++++.. |..|+||||+|+. |+.++|++|+++ |++++.+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~ 66 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQ-NNVNVNAQ-------------NGFGRTALQVMKL-GNPEIARRLLLR-GANPDLK 66 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCC-------------CTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCC
T ss_pred chHhhHHHHHHHcCCHHHHHHHHh-CCCCcccc-------------CccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCC
Confidence 456799999999999999999998 88998876 6899999999999 999999999999 9999999
Q ss_pred CCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCC-cccccccc
Q 006947 119 CGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSV-ERNLRVST 197 (624)
Q Consensus 119 ~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv-~~~~~l~~ 197 (624)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+. .+..+++++|++.|++. +
T Consensus 67 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~------- 131 (162)
T 1ihb_A 67 -DRTGFAVIHDAARAGF---LDTLQTLLEFQADVNIEDNEGNLPLHLAAK----EGHLRVVEFLVKHTASNVG------- 131 (162)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHSCCCTT-------
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHccCCCCC-------
Confidence 9999999999999999 999999999999999999999999999998 45567889999999874 5
Q ss_pred cccCCCCChhhhhhhcCC
Q 006947 198 TTSNSNSPPLSPALENGS 215 (624)
Q Consensus 198 a~~~~g~TpL~lA~e~Gs 215 (624)
..+..|.|||++|+..|.
T Consensus 132 ~~~~~g~t~l~~A~~~~~ 149 (162)
T 1ihb_A 132 HRNHKGDTACDLARLYGR 149 (162)
T ss_dssp CCCTTSCCHHHHHHHTTC
T ss_pred CcCCCCCcHHHHHHHcCC
Confidence 677889999999999984
No 18
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.91 E-value=4e-24 Score=209.57 Aligned_cols=165 Identities=22% Similarity=0.214 Sum_probs=104.7
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccccCCccccCCCCchHH
Q 006947 34 LTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQKGSKQMVNEQRTPLM 93 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~~~~~~~~~D~~G~TPLh 93 (624)
++.++.+|.|+||.||..|+.++|++|++ .|++++..+ +++..+.+.+..+..|.||||
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHH-cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 44445555555555555555555555555 455544322 222333344445667777777
Q ss_pred HHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChh
Q 006947 94 VAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQ 173 (624)
Q Consensus 94 lAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~ 173 (624)
+|+..|+.+++++|++.+.++++.. +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+. .
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~----~ 154 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQ-DDGGWTPMIWATEYKH---VDLVKLLLSKGSDINIRDNEENICLHWAAF----S 154 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----H
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccC-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCccCCCCCCHHHHHHH----C
Confidence 7777777777777777633677766 6677777777777777 777777777777777777777777777776 4
Q ss_pred hHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006947 174 DVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 174 ~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
+..+++++|++.|++++ ..+..|.|||++|++.|
T Consensus 155 ~~~~~~~~Ll~~g~~~~-------~~~~~g~t~L~~A~~~~ 188 (237)
T 3b7b_A 155 GCVDIAEILLAAKCDLH-------AVNIHGDSPLHIAAREN 188 (237)
T ss_dssp CCHHHHHHHHTTTCCTT-------CCCTTCCCHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCCC-------CcCCCCCCHHHHHHHhC
Confidence 44566777777777666 45566677777666554
No 19
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.91 E-value=4.3e-24 Score=209.01 Aligned_cols=147 Identities=20% Similarity=0.246 Sum_probs=135.3
Q ss_pred cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCc----
Q 006947 40 DAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADV---- 115 (624)
Q Consensus 40 dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADV---- 115 (624)
.|.||||.||..|+.++|+.||+..|+++|.. |.+|+||||+|+..|+.++|++||+. |+++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~ 67 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-------------GAMGETALHIAALYDNLEAAMVLMEA-APELVFEP 67 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-Cchhcccc
Confidence 48899999999999999999999559999887 68999999999999999999999998 8887
Q ss_pred -cccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCC-------------CCCcHHHHHhcCCChhhHHHHHHH
Q 006947 116 -NLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDA-------------KGHHPVDVIVVPPKFQDVRLTLEE 181 (624)
Q Consensus 116 -N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~-------------~G~TPLhlAa~~g~~~~~~~lLe~ 181 (624)
+.. +..|.||||+|+..|+ .++|++|+++|++++..+. .|+||||+|+. .+..+++++
T Consensus 68 ~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~ 139 (232)
T 2rfa_A 68 MTSE-LYEGQTALHIAVINQN---VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC----VGSEEIVRL 139 (232)
T ss_dssp CCST-TTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHH----HTCHHHHHH
T ss_pred cccc-CCCCcCHHHHHHHcCC---HHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHH----cCCHHHHHH
Confidence 555 7789999999999999 9999999999999999876 79999999998 566789999
Q ss_pred HHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 182 LLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 182 LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
|++.|++++ ..+..|.||||+|+..|.
T Consensus 140 Ll~~ga~~~-------~~d~~g~t~L~~A~~~~~ 166 (232)
T 2rfa_A 140 LIEHGADIR-------AQDSLGNTVLHILILQPN 166 (232)
T ss_dssp HHHTTCCTT-------CCCTTSCCHHHHHHTCSC
T ss_pred HHHCCCCCC-------CCCCCCCCHHHHHHHcCC
Confidence 999999998 788999999999999884
No 20
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=4.9e-24 Score=196.30 Aligned_cols=144 Identities=28% Similarity=0.359 Sum_probs=132.6
Q ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCC
Q 006947 41 AFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCG 120 (624)
Q Consensus 41 g~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d 120 (624)
+.|+||.||..|+.+.++.||+..+.+++.. |..|.||||+ |..|+.++|++|+++ |++++.+ +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~-~ 65 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-------------NRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQ-D 65 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-------------CTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCC-C
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-------------CCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCc-C
Confidence 5799999999999999999999645577776 6889999999 999999999999998 9999999 9
Q ss_pred CCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccccccccccc
Q 006947 121 NDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTS 200 (624)
Q Consensus 121 ~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~ 200 (624)
..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+. .+..+++++|++. ++++ ..+
T Consensus 66 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~-~~~~-------~~~ 130 (156)
T 1bd8_A 66 TSGTSPVHDAARTGF---LDTLKVLVEHGADVNVPDGTGALPIHLAVQ----EGHTAVVSFLAAE-SDLH-------RRD 130 (156)
T ss_dssp TTSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHH----HTCHHHHHHHHTT-SCTT-------CCC
T ss_pred CCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHH----hChHHHHHHHHhc-cCCC-------CcC
Confidence 999999999999999 999999999999999999999999999998 5567788899988 7777 678
Q ss_pred CCCCChhhhhhhcCC
Q 006947 201 NSNSPPLSPALENGS 215 (624)
Q Consensus 201 ~~g~TpL~lA~e~Gs 215 (624)
..|.|||++|++.|.
T Consensus 131 ~~g~t~l~~A~~~~~ 145 (156)
T 1bd8_A 131 ARGLTPLELALQRGA 145 (156)
T ss_dssp TTSCCHHHHHHHSCC
T ss_pred CCCCCHHHHHHHcCc
Confidence 899999999999984
No 21
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.91 E-value=7.1e-24 Score=207.78 Aligned_cols=169 Identities=27% Similarity=0.386 Sum_probs=151.8
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccc-cCCccccCCC
Q 006947 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQ-KGSKQMVNEQ 88 (624)
Q Consensus 30 d~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~~~-~~~~~~D~~G 88 (624)
...+++..+.+|.|+||.|+..|+.++|+.|++ .|++++..+ +++..+ .+.+..+..|
T Consensus 33 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 111 (237)
T 3b7b_A 33 AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG 111 (237)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTS
T ss_pred cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCC
Confidence 345678888999999999999999999999999 898887654 233334 5667788999
Q ss_pred CchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhc
Q 006947 89 RTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVV 168 (624)
Q Consensus 89 ~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~ 168 (624)
.||||+|+..|+.+++++|+++ |++++.. +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+.
T Consensus 112 ~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 186 (237)
T 3b7b_A 112 WTPMIWATEYKHVDLVKLLLSK-GSDINIR-DNEENICLHWAAFSGC---VDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHCC---HHHHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHC-CCCCCcc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 9999999999999999999998 9999998 9999999999999999 999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 169 PPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 169 ~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
.+..+++++|+++|++++ ..+..|.|||++|+.+|.
T Consensus 187 ----~~~~~~v~~Ll~~gad~~-------~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 187 ----ENRYDCVVLFLSRDSDVT-------LKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp ----TTCHHHHHHHHTTTCCTT-------CCCTTSCCHHHHSCTTCH
T ss_pred ----hCCHhHHHHHHHcCCCCC-------ccCCCCCCHHHHHHHHHH
Confidence 455678999999999998 778999999999999883
No 22
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.91 E-value=2.7e-24 Score=211.75 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=140.5
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006947 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~G 112 (624)
+++..+..|.||||.|+..|+.++|+.||+ .|++++.. |..|.||||+|+..|+.++|++|++. |
T Consensus 37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~ 101 (236)
T 1ikn_D 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELR-------------DFRGNTPLHLACEQGCLASVGVLTQS-C 101 (236)
T ss_dssp CCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHS-T
T ss_pred HhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-c
Confidence 688899999999999999999999999999 89999887 68999999999999999999999998 7
Q ss_pred CC------ccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCC-CCCcHHHHHhcCCChhhHHHHHHHHHHC
Q 006947 113 AD------VNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDA-KGHHPVDVIVVPPKFQDVRLTLEELLAT 185 (624)
Q Consensus 113 AD------VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~-~G~TPLhlAa~~g~~~~~~~lLe~LL~~ 185 (624)
++ ++.. +..|.||||+|+..|+ .++|++|+++|++++.+|. .|+||||+|+. .+..+++++|+++
T Consensus 102 ~~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ 173 (236)
T 1ikn_D 102 TTPHLHSILKAT-NYNGHTCLHLASIHGY---LGIVELLVSLGADVNAQEPCNGRTALHLAVD----LQNPDLVSLLLKC 173 (236)
T ss_dssp TTTSSSCGGGCC-CTTCCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHTT
T ss_pred cchhHHHHhhcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHc
Confidence 65 5666 8889999999999999 9999999999999999998 99999999999 4556789999999
Q ss_pred CCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 186 DGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 186 gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
|++++ ..+..|.|||++|+..|.
T Consensus 174 ga~~~-------~~~~~g~tpl~~A~~~~~ 196 (236)
T 1ikn_D 174 GADVN-------RVTYQGYSPYQLTWGRPS 196 (236)
T ss_dssp TCCSC-------CCCTTCCCGGGGCTTSSC
T ss_pred CCCCC-------cccCCCCCHHHHHHccCc
Confidence 99998 778889999999988874
No 23
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.91 E-value=2.3e-24 Score=215.65 Aligned_cols=164 Identities=21% Similarity=0.210 Sum_probs=108.9
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHhcCCCC---Ccccc--------------------cccccccCCccccCCCCc
Q 006947 34 LTVETDDAFASLLELAANNDVEGFKRSIVCDPSG---VDEVG--------------------LWYGRQKGSKQMVNEQRT 90 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~Gad---vN~~~--------------------l~~~~~~~~~~~D~~G~T 90 (624)
++..|.+|.||||.||..|+.++|+.||+ .|++ +|..+ +++..+.+.+..|..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 56789999999999999999999999998 7776 44432 233444455555555556
Q ss_pred hHHHHHhcCCHHHHHHHHHhcCCC-----------------------------------------------ccccCCCCC
Q 006947 91 PLMVAATYGSIDIIRLILSESGAD-----------------------------------------------VNLSCGNDK 123 (624)
Q Consensus 91 PLhlAA~~G~~eiVklLL~~~GAD-----------------------------------------------VN~~~d~~G 123 (624)
|||+|+..|+.++|++|+++ |++ ++.. +..|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g 158 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDG 158 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSS-CCSSCCCC-----------------------------------CCCGGGGTTCC-CTTS
T ss_pred HHHHHHHcCCcchhHhhhcc-CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc-CCCC
Confidence 66666655666666655554 332 4444 5556
Q ss_pred ChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCC-CCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCC
Q 006947 124 STALHCAASGGALNAVDVVKLLLAAGADPNFVDAK-GHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNS 202 (624)
Q Consensus 124 ~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~-G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~ 202 (624)
.||||+|+..|+ .++|++||++|++++..+.. |+||||+|+. .+..+++++|++.|++++ ..+..
T Consensus 159 ~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~gad~~-------~~d~~ 224 (282)
T 1oy3_D 159 HTPLHVAVIHKD---AEMVRLLRDAGADLNKPEPTCGRTPLHLAVE----AQAASVLELLLKAGADPT-------ARMYG 224 (282)
T ss_dssp CCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------CCCTT
T ss_pred cCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCcCHHHHHHH----cCCHHHHHHHHHcCCCCc-------ccccC
Confidence 666666666666 67777777777777766643 7777777776 334456666667777666 55666
Q ss_pred CCChhhhhhhcC
Q 006947 203 NSPPLSPALENG 214 (624)
Q Consensus 203 g~TpL~lA~e~G 214 (624)
|.|||++|+..|
T Consensus 225 g~tpL~~A~~~~ 236 (282)
T 1oy3_D 225 GRTPLGSALLRP 236 (282)
T ss_dssp SCCHHHHHHTSS
T ss_pred CCCHHHHHHHcC
Confidence 777777766655
No 24
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.91 E-value=9.1e-24 Score=205.11 Aligned_cols=162 Identities=20% Similarity=0.212 Sum_probs=119.4
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------ccccccc-CCccccCCCCchHHHH
Q 006947 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQK-GSKQMVNEQRTPLMVA 95 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~~~~-~~~~~D~~G~TPLhlA 95 (624)
.+.+|.|+||.||..|+.++|+.|++ .|++++..+ +++..+. ..+..+..|.||||+|
T Consensus 21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 99 (223)
T 2f8y_A 21 TDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 99 (223)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHH
T ss_pred cCCCCCchHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHH
Confidence 47788899999999999999999988 788887653 1222222 4455567777777777
Q ss_pred HhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhH
Q 006947 96 ATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDV 175 (624)
Q Consensus 96 A~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~ 175 (624)
+..|+.+++++|+++ |++++.. +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+. .+.
T Consensus 100 ~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~ 170 (223)
T 2f8y_A 100 ARLAVEGMLEDLINS-HADVNAV-DDLGKSALHWAAAVNN---VDAAVVLLKNGANKDMQNNREETPLFLAAR----EGS 170 (223)
T ss_dssp HHHTCHHHHHHHHHT-TCCTTCB-CTTSCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH----HTC
T ss_pred HHhCcHHHHHHHHHc-CCCCcCc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCcCHHHHHHH----cCC
Confidence 777777777777776 7777777 7777777777777777 777777777777777777777777777776 455
Q ss_pred HHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 176 RLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 176 ~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
.+++++|+++|++++ ..+..|.|||++|++.|.
T Consensus 171 ~~~v~~Ll~~ga~~~-------~~~~~g~t~l~~A~~~~~ 203 (223)
T 2f8y_A 171 YETAKVLLDHFANRD-------ITDHMDRLPRDIAQERMH 203 (223)
T ss_dssp HHHHHHHHHTTCCTT-------CCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCc-------cccccCCCHHHHHHHhcc
Confidence 567777777777776 556677777777777763
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.91 E-value=7.4e-24 Score=206.86 Aligned_cols=153 Identities=22% Similarity=0.254 Sum_probs=138.3
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006947 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~G 112 (624)
.++..+.+|.|+||.|+..|+.++|+.|++ .|++++.. |..|.||||+|+..|+.++|++|+++ |
T Consensus 32 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g 96 (231)
T 3aji_A 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDK-------------DDAGWSPLHIAASAGXDEIVKALLVK-G 96 (231)
T ss_dssp GGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-T
T ss_pred hhhcCCCCCCCHHHHHHHcCcHHHHHHHHH-hCCCCCCc-------------CCCCCCHHHHHHHcCHHHHHHHHHHc-C
Confidence 356778899999999999999999999999 88988876 68899999999999999999999988 8
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccc
Q 006947 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERN 192 (624)
Q Consensus 113 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~ 192 (624)
++++.+ +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+. .+..+++++|++.|++++
T Consensus 97 ~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~-- 166 (231)
T 3aji_A 97 AHVNAV-NQNGCTPLHYAASKNR---HEIAVMLLEGGANPDAKDHYDATAMHRAAA----KGNLKMVHILLFYKASTN-- 166 (231)
T ss_dssp CCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCSC--
T ss_pred CCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHH----cCCHHHHHHHHhcCCCcc--
Confidence 999988 8899999999999999 999999999999999999999999999998 556778889999999887
Q ss_pred ccccccccCCCCChhhhhhhcCC
Q 006947 193 LRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 193 ~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
..+..|.|||++|+..|.
T Consensus 167 -----~~~~~g~t~L~~A~~~~~ 184 (231)
T 3aji_A 167 -----IQDTEGNTPLHLACDEER 184 (231)
T ss_dssp -----CCCTTSCCHHHHHHHTTC
T ss_pred -----ccCCCCCCHHHHHHHCCC
Confidence 677889999999998874
No 26
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.91 E-value=1.2e-24 Score=216.72 Aligned_cols=177 Identities=19% Similarity=0.187 Sum_probs=146.0
Q ss_pred CCCCcc----cCccChHHHHHHHHc---CCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHH
Q 006947 31 MNHLTV----ETDDAFASLLELAAN---NDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDI 103 (624)
Q Consensus 31 ~~~ini----~d~dg~TpLh~AA~~---Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~ei 103 (624)
..+++. .+.+|.||||.||.. |+.++|+.||+ .|++++....+. .......|..|.||||+|+..|+.++
T Consensus 29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~ 105 (256)
T 2etb_A 29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ-IDKDSGNPKPLV--NAQCTDEFYQGHSALHIAIEKRSLQC 105 (256)
T ss_dssp TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH-HHHHTTCSSCGG--GCCCCSTTTTTCCHHHHHHHTTCHHH
T ss_pred CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHh-cCCcccchhhhc--ccccccccccCCCHHHHHHHcCCHHH
Confidence 345666 789999999999999 99999999999 787776443111 12223346789999999999999999
Q ss_pred HHHHHHhcCCCccccCCCC-------------CChHHHHHHhCCCCChHHHHHHHHH---CCCCCCCcCCCCCcHHHHHh
Q 006947 104 IRLILSESGADVNLSCGND-------------KSTALHCAASGGALNAVDVVKLLLA---AGADPNFVDAKGHHPVDVIV 167 (624)
Q Consensus 104 VklLL~~~GADVN~~~d~~-------------G~TPLH~Aa~~G~~~~~eiVklLL~---~GAD~n~~D~~G~TPLhlAa 167 (624)
|++||++ |+++|.+ +.. |.||||+|+..|+ .++|++||+ .|+|++.+|..|+||||+|+
T Consensus 106 v~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~ 180 (256)
T 2etb_A 106 VKLLVEN-GADVHLR-ACGRFFQKHQGTCFYFGELPLSLAACTKQ---WDVVTYLLENPHQPASLEATDSLGNTVLHALV 180 (256)
T ss_dssp HHHHHHT-TCCTTCC-CCSGGGSCCSSSCCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHc-CCCCCcc-cccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCcCccCCCCCCHHHHHH
Confidence 9999999 9999998 665 9999999999999 999999999 99999999999999999999
Q ss_pred c--CCChh---hHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 168 V--PPKFQ---DVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 168 ~--~g~~~---~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
. .++.+ ...+++++|++.|++++....+....+..|.|||++|++.|.
T Consensus 181 ~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 233 (256)
T 2etb_A 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233 (256)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence 7 44433 123488999999988842222234788999999999999994
No 27
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.91 E-value=4.9e-24 Score=208.13 Aligned_cols=154 Identities=23% Similarity=0.273 Sum_probs=143.1
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
..+++..+..|.|+||.|+..|+.++++.|++ .|++++.. |..|.||||+|+..|+.+++++|+++
T Consensus 63 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLV-KGAHVNAV-------------NQNGCTPLHYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 45677888999999999999999999999999 89998876 68899999999999999999999998
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006947 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 111 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
|++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+. .+..+++++|+++|++++
T Consensus 129 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 129 -GANPDAK-DHYDATAMHRAAAKGN---LKMVHILLFYKASTNIQDTEGNTPLHLACD----EERVEEAKFLVTQGASIY 199 (231)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSC
T ss_pred -CCCCCCc-CCCCCcHHHHHHHcCC---HHHHHHHHhcCCCccccCCCCCCHHHHHHH----CCCHHHHHHHHHCCCCCC
Confidence 9999998 9999999999999999 999999999999999999999999999998 455678999999999998
Q ss_pred ccccccccccCCCCChhhhhhhcC
Q 006947 191 RNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 191 ~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
..+..|.|||++|.+.+
T Consensus 200 -------~~~~~g~t~l~~A~~~~ 216 (231)
T 3aji_A 200 -------IENKEEKTPLQVAKGGL 216 (231)
T ss_dssp -------CCCTTSCCHHHHSCHHH
T ss_pred -------CCCCCCCCHHHHHHhhH
Confidence 77889999999998766
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.91 E-value=4.4e-24 Score=217.72 Aligned_cols=162 Identities=25% Similarity=0.300 Sum_probs=138.2
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCC--------cc---------------------cccccccccCCccccC
Q 006947 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGV--------DE---------------------VGLWYGRQKGSKQMVN 86 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~Gadv--------N~---------------------~~l~~~~~~~~~~~D~ 86 (624)
.+|..+.++|+.||..|++++|+.||+ .+.+. +. ..++...+.+++..|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~-~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLE-WTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHT-CC----------------------------------------CCCCTTCCCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHH-CCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence 456778899999999999999999998 55432 11 1134556677888999
Q ss_pred CCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 006947 87 EQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVI 166 (624)
Q Consensus 87 ~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlA 166 (624)
+|+||||+||..|+.++|++||+. |++++.. +.+|.||||+|+..++ .+++++|++.|++++.+|..|+||||+|
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~-~~~g~t~l~~a~~~~~---~~~~~~Ll~~g~~~n~~d~~g~TpL~~A 159 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKH-GANAGAR-NADQAVPLHLACQQGH---FQVVKCLLDSNAKPNKKDLSGNTPLIYA 159 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhc-CCCcCcc-CCCCCCccccccccCh---HHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999998 9999999 9999999999999999 9999999999999999999999999999
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006947 167 VVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 167 a~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
+..|+ .+++++|++.|++++ ..+..|.||||+|+..|
T Consensus 160 ~~~g~----~~~v~~Ll~~gadvn-------~~~~~g~t~Lh~A~~~g 196 (269)
T 4b93_B 160 CSGGH----HELVALLLQHGASIN-------ASNNKGNTALHEAVIEK 196 (269)
T ss_dssp HHTTC----GGGHHHHHHTTCCTT-------CBCTTSCBHHHHHHHTT
T ss_pred HHCCC----HHHHHHHHHCCCCCC-------ccccCCCcHHHHHHHcC
Confidence 99555 457888889999998 77888999999998877
No 29
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.91 E-value=7.9e-24 Score=212.74 Aligned_cols=152 Identities=24% Similarity=0.319 Sum_probs=128.5
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
..+++..+.+|.||||.||..|+.++|+.|++ .|+++|.. |.+|.||||+|+..|+.++|++|+++
T Consensus 26 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 91 (261)
T 2xai_A 26 GWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGV-------------TADWHTPLFNACVSGSWDCVNLLLQH 91 (261)
T ss_dssp TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 34678889999999999999999999999999 88998876 67889999999999999999999988
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006947 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 111 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
|++++.. .+|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+. .+..+++++|++.|++++
T Consensus 92 -g~~~~~~--~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~ 161 (261)
T 2xai_A 92 -GASVQPE--SDLASPIHEAARRGH---VECVNSLIAYGGNIDHKISHLGTPLYLACE----NQQRACVKKLLESGADVN 161 (261)
T ss_dssp -TCCSSCS--CTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCBTTTBCHHHHHHH----TTCHHHHHHHHHHTCCTT
T ss_pred -CCCCCCC--CCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCcCCCCCCCHHHHHHH----hCCHHHHHHHHHcCCCCC
Confidence 8888854 568899999999988 899999999999999999999999999988 445567888888888876
Q ss_pred ccccccccccCCCCChhhhhhhcC
Q 006947 191 RNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 191 ~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
.+..|.||||+|++.|
T Consensus 162 --------~~~~g~t~Lh~A~~~~ 177 (261)
T 2xai_A 162 --------QGKGQDSPLHAVARTA 177 (261)
T ss_dssp --------CCBTTBCHHHHHHHHT
T ss_pred --------CCCCCCChHHHHHHcC
Confidence 2567788888776554
No 30
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.91 E-value=9.8e-24 Score=205.21 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=105.7
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC-
Q 006947 34 LTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG- 112 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~G- 112 (624)
++..+.+|.|+||.|+..|+.++++.|++ .|++++... ..+..|.||||+|+..|+.+++++|+++ |
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~----------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~ 96 (228)
T 2dzn_A 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDD----------YPDDSGWTPFHIACSVGNLEVVKSLYDR-PL 96 (228)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TCTTCCGGG----------CCCTTSCCHHHHHHHHCCHHHHHHHHSS-SS
T ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHh-ccccccccc----------cCCCCCCCHHHHHHHcCCHHHHHHHHhC-CC
Confidence 34478889999999999999999999998 774444321 0156677777777777777777777766 5
Q ss_pred -CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCC-CCCc
Q 006947 113 -ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATD-GSVE 190 (624)
Q Consensus 113 -ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~g-adv~ 190 (624)
++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+. .+..+++++|++.| ++++
T Consensus 97 ~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~ 168 (228)
T 2dzn_A 97 KPDLNKI-TNQGVTCLHLAVGKKW---FEVSQFLIENGASVRIKDKFNQIPLHRAAS----VGSLKLIELLCGLGKSAVN 168 (228)
T ss_dssp CCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHTTTCCCSC
T ss_pred CcccccC-CcCCCCHHHHHHHcCC---HhHHHHHHHcCCCccccCCCCCCHHHHHHH----cCCHHHHHHHHhcCccccc
Confidence 666666 6667777777777777 777777777777777777777777777776 33445666666666 5555
Q ss_pred ccccccccccCCCCChhhhhhhcC
Q 006947 191 RNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 191 ~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
..+..|.|||++|+..|
T Consensus 169 -------~~d~~g~t~L~~A~~~~ 185 (228)
T 2dzn_A 169 -------WQDKQGWTPLFHALAEG 185 (228)
T ss_dssp -------CCCTTSCCHHHHHHHTT
T ss_pred -------CcCCCCCCHHHHHHHcC
Confidence 45556666666665443
No 31
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.91 E-value=7.7e-24 Score=214.72 Aligned_cols=147 Identities=23% Similarity=0.312 Sum_probs=105.7
Q ss_pred CccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccc
Q 006947 38 TDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNL 117 (624)
Q Consensus 38 d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~ 117 (624)
+.++.|+||.||..|++++|+.||+ .|+++|.. |.+|.||||+||..|+.++|++||++ |+++|.
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~ 101 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLE-RGADINYA-------------NVDGLTALHQACIDDNVDMVKFLVEN-GANINQ 101 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCB-------------CTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTC
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHH-cCCCCccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCC
Confidence 3456778888888888888888877 67777765 46677777777777777777777776 777777
Q ss_pred cCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcC-----------------------------------------
Q 006947 118 SCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVD----------------------------------------- 156 (624)
Q Consensus 118 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D----------------------------------------- 156 (624)
. +..|.||||+|+..|+ .++|++|+++|++++.+|
T Consensus 102 ~-~~~g~tpL~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 177 (299)
T 1s70_B 102 P-DNEGWIPLHAAASCGY---LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177 (299)
T ss_dssp C-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred C-CCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHH
Confidence 6 7777777777777777 777777777777776554
Q ss_pred -------------------CCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006947 157 -------------------AKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 157 -------------------~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
..|.||||+|+. .+..+++++|++.|++++ ..+..|.||||+|+..|
T Consensus 178 ~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~g~d~~-------~~d~~g~tpL~~A~~~~ 243 (299)
T 1s70_B 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAA----KGYTEVLKLLIQARYDVN-------IKDYDGWTPLHAAAHWG 243 (299)
T ss_dssp HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHH----HTCHHHHHHHHTTTCCTT-------CCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHhccCcchhhhcCCCCCHHHHHHH----CCcHHHHHHHHHcCCCCC-------CcCCCCCcHHHHHHhcC
Confidence 246677777777 445567777777777776 55666777777776554
No 32
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.9e-24 Score=213.87 Aligned_cols=138 Identities=19% Similarity=0.199 Sum_probs=124.6
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHH
Q 006947 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILS 109 (624)
Q Consensus 30 d~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~ 109 (624)
+.+..+..+.++.|+||.||..|+.++|+.||+ .|+++|.. |.+|+||||+||..|+.++|++||+
T Consensus 10 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~tpLh~A~~~g~~~~v~~Ll~ 75 (229)
T 2vge_A 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQP-------------NEEGITALHNAICGANYSIVDFLIT 75 (229)
T ss_dssp CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCccccccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 344455667789999999999999999999999 88999876 6899999999999999999999999
Q ss_pred hcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcC-CCCCcHHHHH--hcCCChhhHHHHHHHHHHCC
Q 006947 110 ESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVD-AKGHHPVDVI--VVPPKFQDVRLTLEELLATD 186 (624)
Q Consensus 110 ~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D-~~G~TPLhlA--a~~g~~~~~~~lLe~LL~~g 186 (624)
. |+++|.+ +..|+||||+|+..|+ .++|++||+.|++++.++ ..|+||||+| +. .+..+++++|++.|
T Consensus 76 ~-ga~~n~~-d~~g~tpLh~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~----~~~~~~v~~Ll~~g 146 (229)
T 2vge_A 76 A-GANVNSP-DSHGWTPLHCAASCND---TVICMALVQHGAAIFATTLSDGATAFEKCDPYR----EGYADCATYLADVE 146 (229)
T ss_dssp T-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTS----TTHHHHHHHHHHHH
T ss_pred C-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHh----cChHHHHHHHHHcC
Confidence 9 9999999 9999999999999999 999999999999999997 6999999999 77 56777888888877
Q ss_pred CCCc
Q 006947 187 GSVE 190 (624)
Q Consensus 187 adv~ 190 (624)
++++
T Consensus 147 a~~~ 150 (229)
T 2vge_A 147 QSMG 150 (229)
T ss_dssp HHTT
T ss_pred CCcc
Confidence 7665
No 33
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=2e-24 Score=200.55 Aligned_cols=144 Identities=24% Similarity=0.252 Sum_probs=117.7
Q ss_pred cccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCC
Q 006947 35 TVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGAD 114 (624)
Q Consensus 35 ni~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GAD 114 (624)
...++.|.|+||.||..|++++|+.||+ .|+++|.. |..|+||||+|+ .|+.++|++||++ |++
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~ 69 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLE-AGANPNAP-------------NSYGRRPIQVMM-MGSARVAELLLLH-GAE 69 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCC-------------CSSSCCTTTSSC-TTCHHHHHHHHTT-TCC
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHH-cCCHHHHHHHHHc-CCC
Confidence 3457789999999999999999999999 79999887 689999999986 9999999999998 999
Q ss_pred ccccCCCCCCh-HHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccc
Q 006947 115 VNLSCGNDKST-ALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNL 193 (624)
Q Consensus 115 VN~~~d~~G~T-PLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~ 193 (624)
+|.+ +..|.| |||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|+++|++++
T Consensus 70 ~~~~-d~~g~ttpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~----~~~~~~v~~Ll~~ga~~~--- 138 (156)
T 1bi7_B 70 PNCA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVRDAWGRLPVDLAEE----LGHRDVARYLRAAAGGTR--- 138 (156)
T ss_dssp CCCC-CTTTCCCHHHHHHHHTC---HHHHHHHHHHTCCSSCCCTTCCCHHHHHHH----HTCHHHHHHHSSCC-------
T ss_pred CCCc-CCCCCcHHHHHHHHCCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHH----hCHHHHHHHHHHcCCCCC---
Confidence 9999 999999 9999999999 999999999999999999999999999998 566789999999999998
Q ss_pred cccccccCCCCChhhh
Q 006947 194 RVSTTTSNSNSPPLSP 209 (624)
Q Consensus 194 ~l~~a~~~~g~TpL~l 209 (624)
..+..|.|+.+.
T Consensus 139 ----~~~~~g~t~~~~ 150 (156)
T 1bi7_B 139 ----GSNHARIDAAEG 150 (156)
T ss_dssp ----------------
T ss_pred ----ccCcCcCccccc
Confidence 566666666553
No 34
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.90 E-value=6.1e-24 Score=216.63 Aligned_cols=152 Identities=24% Similarity=0.266 Sum_probs=141.4
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHhcCCC-CCcccccccccccCCccccCCCCchHHHHH-----hcCCHHHHHHH
Q 006947 34 LTVETDDAFASLLELAANNDVEGFKRSIVCDPS-GVDEVGLWYGRQKGSKQMVNEQRTPLMVAA-----TYGSIDIIRLI 107 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~Ga-dvN~~~l~~~~~~~~~~~D~~G~TPLhlAA-----~~G~~eiVklL 107 (624)
++..|.+|.||||+||..|+.++|+.||+ .|+ +++.. +..|.||||+|+ ..++.+++++|
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~~g~tpL~~a~~~~~~~~~~~~~v~~L 169 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLD-SGVCKVDKQ-------------NRAGYSPIMLTALATLKTQDDIETVLQL 169 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TSCCCTTCC-------------CTTSCCHHHHGGGCCCCSHHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCcCCCC-------------CCCCCCHHHHHHHHHhhhhhhHHHHHHH
Confidence 77889999999999999999999999999 666 88876 689999999999 67899999999
Q ss_pred HHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHH-CC
Q 006947 108 LSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLA-TD 186 (624)
Q Consensus 108 L~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~-~g 186 (624)
++. |++++.. +..|+||||+|+..|+ .++|++||++|+|+|.+|..|+||||+|+. .+..+++++|++ .|
T Consensus 170 l~~-g~~~~~~-~~~g~tpLh~A~~~g~---~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~----~g~~~iv~~Ll~~~g 240 (276)
T 4hbd_A 170 FRL-GNINAKA-SQAGQTALMLAVSHGR---VDVVKALLACEADVNVQDDDGSTALMCACE----HGHKEIAGLLLAVPS 240 (276)
T ss_dssp HHH-SCTTCCC-TTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHTSTT
T ss_pred HHc-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHhCCCCCCCCCCCCCCHHHHHHH----CCCHHHHHHHHhcCC
Confidence 999 8988887 8899999999999999 999999999999999999999999999999 566789999999 89
Q ss_pred CCCcccccccccccCCCCChhhhhhhcCC
Q 006947 187 GSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 187 adv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
++++ ..+..|.|||++|++.|.
T Consensus 241 ad~~-------~~d~~g~TpL~~A~~~g~ 262 (276)
T 4hbd_A 241 CDIS-------LTDRDGSTALMVALDAGQ 262 (276)
T ss_dssp CCTT-------CCCTTSCCHHHHHHHHTC
T ss_pred CCCc-------CcCCCCCCHHHHHHHcCC
Confidence 9988 788999999999999984
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.90 E-value=1.9e-23 Score=202.82 Aligned_cols=147 Identities=18% Similarity=0.190 Sum_probs=83.8
Q ss_pred CCHHHHHHHHhcCCCCCcccc---------------------cccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 52 NDVEGFKRSIVCDPSGVDEVG---------------------LWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 52 Gdle~Vk~LLe~~GadvN~~~---------------------l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
|+.++|+.|++ .|.+++... +++..+.+.+..|..|.||||+|+..|+.++|++|+++
T Consensus 2 g~~~~i~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 2 DAPAVISDFIY-QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ---CCEETTEE-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CcHHHHHHHHH-cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 56777778887 777776542 23334444555555556666666666666666666655
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006947 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 111 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
...+++.. +..|.||||+|+..|+ .+++++|++.|++++.+|..|+||||+|+. .+..+++++|++.|++++
T Consensus 81 ~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~ 152 (223)
T 2f8y_A 81 RATDLDAR-MHDGTTPLILAARLAV---EGMLEDLINSHADVNAVDDLGKSALHWAAA----VNNVDAAVVLLKNGANKD 152 (223)
T ss_dssp TTSCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred CCCCcccC-CCCCCcHHHHHHHhCc---HHHHHHHHHcCCCCcCcCCCCCcHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence 22255555 5556666666666555 666666666666666666666666666665 233445555555665555
Q ss_pred ccccccccccCCCCChhhhhhhcC
Q 006947 191 RNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 191 ~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
..+..|.|||++|++.|
T Consensus 153 -------~~~~~g~t~L~~A~~~~ 169 (223)
T 2f8y_A 153 -------MQNNREETPLFLAAREG 169 (223)
T ss_dssp -------CCCTTCCCHHHHHHHHT
T ss_pred -------CcCCCCcCHHHHHHHcC
Confidence 44555666666666655
No 36
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.90 E-value=2.9e-24 Score=214.19 Aligned_cols=170 Identities=16% Similarity=0.146 Sum_probs=140.9
Q ss_pred CccChHHHHHHH---HcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCC
Q 006947 38 TDDAFASLLELA---ANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGAD 114 (624)
Q Consensus 38 d~dg~TpLh~AA---~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GAD 114 (624)
+.+|.|+||.|+ ..|+.++|+.||+ .|++++....+ .....+..|.+|+||||+||..|+.++|++||++ |++
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~--~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~ 118 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLD-IAEKTGNMREF--INSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GAD 118 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHH-HHHHTTCHHHH--HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHH-hcccccchHhh--hcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCC
Confidence 377999999999 6799999999999 66654432110 1122334467999999999999999999999998 999
Q ss_pred ccccCC--------------CCCChHHHHHHhCCCCChHHHHHHHHH---CCCCCCCcCCCCCcHHHHHhcCCC-----h
Q 006947 115 VNLSCG--------------NDKSTALHCAASGGALNAVDVVKLLLA---AGADPNFVDAKGHHPVDVIVVPPK-----F 172 (624)
Q Consensus 115 VN~~~d--------------~~G~TPLH~Aa~~G~~~~~eiVklLL~---~GAD~n~~D~~G~TPLhlAa~~g~-----~ 172 (624)
+|.. + ..|.||||+|+..|+ .++|++||+ .|++++.+|..|+||||+|+..++ .
T Consensus 119 ~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~ 194 (260)
T 3jxi_A 119 VHAQ-ARGRFFQPKDEGGYFYFGELPLSLAACTNQ---PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENT 194 (260)
T ss_dssp TTCC-CEECCCSSSCCCCSCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHH
T ss_pred cCcc-ccccccCcccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHH
Confidence 9998 6 689999999999999 999999999 999999999999999999996443 2
Q ss_pred hhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 173 QDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 173 ~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
....+++++|++.|++++....+....+..|.|||++|++.|.
T Consensus 195 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 195 KFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence 2336899999999998864334445788999999999999994
No 37
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.90 E-value=3.6e-24 Score=223.49 Aligned_cols=156 Identities=15% Similarity=0.037 Sum_probs=139.6
Q ss_pred cCCCCcc-cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCC---HHHHH
Q 006947 30 DMNHLTV-ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGS---IDIIR 105 (624)
Q Consensus 30 d~~~ini-~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~---~eiVk 105 (624)
..-+++. .+.+|.||||+||..|+.++|+.||+ .|+++|.. |.+|+||||+|+..|+ .++++
T Consensus 119 ~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~-------------d~~g~TpLh~A~~~g~~~~~~~~~ 184 (327)
T 1sw6_A 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYG-------------DNMGESCLVKAVKSVNNYDSGTFE 184 (327)
T ss_dssp SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBC-------------CTTCCCHHHHHHHSSHHHHTTCHH
T ss_pred cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHhcccccHHHHH
Confidence 3367788 89999999999999999999999999 89999987 6899999999999999 78999
Q ss_pred HHHHhcCCCccccCCCCCChHHHHHHh----CCCCChHHHHHHHHHCCC-------------------------------
Q 006947 106 LILSESGADVNLSCGNDKSTALHCAAS----GGALNAVDVVKLLLAAGA------------------------------- 150 (624)
Q Consensus 106 lLL~~~GADVN~~~d~~G~TPLH~Aa~----~G~~~~~eiVklLL~~GA------------------------------- 150 (624)
.||+..+++++.+ +..|+||||+|+. .|+ .++|++|++.++
T Consensus 185 ~ll~~~~~~~~~~-d~~g~tpLh~A~~~~~~~g~---~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t 260 (327)
T 1sw6_A 185 ALLDYLYPCLILE-DSMNRTILHHIIITSGMTGC---SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 260 (327)
T ss_dssp HHHHHHGGGGGEE-CTTCCCHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHGGGCCEEEC----------------C
T ss_pred HHHHhhhccccCC-CCCCCCHHHHHHHHcccccc---HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCC
Confidence 9998855899999 9999999999999 899 999999998743
Q ss_pred --------------CCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006947 151 --------------DPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 151 --------------D~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
+++.+|..|+||||+|+. .+..+++++|+++|++++ ..+..|.|||++|+++|
T Consensus 261 ~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~Gad~~-------~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 261 SILENLDLKWIIANMLNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADPF-------IANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCTT-------CCCTTSCCGGGGTCC--
T ss_pred hhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCc-------ccCCCCCCHHHHHHhcC
Confidence 688889999999999998 556789999999999998 88899999999998876
No 38
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.90 E-value=4e-24 Score=213.60 Aligned_cols=153 Identities=23% Similarity=0.271 Sum_probs=80.5
Q ss_pred CCcccCccChHHHHHHHHcC-------------CHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcC
Q 006947 33 HLTVETDDAFASLLELAANN-------------DVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYG 99 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~G-------------dle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G 99 (624)
+++.+|.+|.||||.|+..| +.++++.|++ .|.+++... |.+|+||||+||..|
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~------------d~~g~t~L~~A~~~g 68 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY-QGASLHNQT------------DRTGETALHLAARYS 68 (253)
T ss_dssp ---------------------------------------------------CC------------CTTSCCHHHHHHHTT
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHH-ccCCccccc------------CCCCCcHHHHHHHcC
Confidence 57889999999999999987 8999999999 888876542 567777777777777
Q ss_pred CHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCC-CCCCcCCCCCcHHHHHhcCCChhhHHHH
Q 006947 100 SIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGA-DPNFVDAKGHHPVDVIVVPPKFQDVRLT 178 (624)
Q Consensus 100 ~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GA-D~n~~D~~G~TPLhlAa~~g~~~~~~~l 178 (624)
+.++|++||++ |++++.. +..|.||||+|+..|+ .+++++|++.|+ +++..|..|.||||+|+. .+..++
T Consensus 69 ~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~----~~~~~~ 139 (253)
T 1yyh_A 69 RSDAAKRLLEA-SADANIQ-DNMGRTPLHAAVSADA---QGVFQILIRNRATDLDARMHDGTTPLILAAR----LAVEGM 139 (253)
T ss_dssp CHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH----HTCSSH
T ss_pred CHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCcHHHHHHH----cChHHH
Confidence 77777777776 6777776 6777777777777777 777777777765 677777777777777776 333456
Q ss_pred HHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006947 179 LEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 179 Le~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
+++|++.|++++ ..+..|.||||+|+..|
T Consensus 140 v~~Ll~~g~~~~-------~~d~~g~t~L~~A~~~~ 168 (253)
T 1yyh_A 140 LEDLINSHADVN-------AVDDLGKSALHWAAAVN 168 (253)
T ss_dssp HHHHHHTTCCTT-------CBCTTSCBHHHHHHHHT
T ss_pred HHHHHHcCCCCC-------CcCCCCCCHHHHHHHcC
Confidence 666666776666 55566677777776665
No 39
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.90 E-value=8.5e-24 Score=221.69 Aligned_cols=167 Identities=11% Similarity=0.080 Sum_probs=135.1
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc------------------ccccc----ccCCcc------
Q 006947 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG------------------LWYGR----QKGSKQ------ 83 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~------------------l~~~~----~~~~~~------ 83 (624)
.+++..+..|.||||+||..|+.++|+.||+ .|++++... +++.. +...+.
T Consensus 44 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 122 (364)
T 3ljn_A 44 VSPTIQNRFGCTALHLACKFGCVDTAKYLAS-VGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECD 122 (364)
T ss_dssp CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHH-HCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCC
T ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcc
Confidence 3556667777777777777777777777777 666655421 11111 222222
Q ss_pred -----------ccCCCCchHHHHHhcC--CHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCC
Q 006947 84 -----------MVNEQRTPLMVAATYG--SIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGA 150 (624)
Q Consensus 84 -----------~D~~G~TPLhlAA~~G--~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GA 150 (624)
.|.+|.||||+|+..| +.++|++||+. |+++|.. +..|.||||+|+..|+ .++|++||++|+
T Consensus 123 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~g~ 197 (364)
T 3ljn_A 123 EREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAK-DKADETPLMRAMEFRN---REALDLMMDTVP 197 (364)
T ss_dssp CCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHCS
T ss_pred hHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHhccc
Confidence 6778999999999999 99999999998 8999998 8999999999999999 999999999999
Q ss_pred C-----CCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 151 D-----PNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 151 D-----~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
+ ++.+|..|+||||+|+. .+..+++++|+++|++++ ..+..|.|||++|++.|.
T Consensus 198 ~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~gad~~-------~~d~~g~tpL~~A~~~g~ 256 (364)
T 3ljn_A 198 SKSSLRLDYANKQGNSHLHWAIL----INWEDVAMRFVEMGIDVN-------MEDNEHTVPLYLSVRAAM 256 (364)
T ss_dssp CSSSCCTTCCCTTCCCTTHHHHT----TTCHHHHHHHHTTTCCTT-------CCCTTSCCHHHHHHHTCC
T ss_pred ccccccccccCCCCCcHHHHHHH----cCCHHHHHHHHHcCCCCC-------CCCCCCCCHHHHHHHhCh
Confidence 8 99999999999999998 455678899999999988 778899999999999884
No 40
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.90 E-value=3e-23 Score=201.83 Aligned_cols=148 Identities=19% Similarity=0.264 Sum_probs=125.8
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCC--CCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCC
Q 006947 37 ETDDAFASLLELAANNDVEGFKRSIVCDP--SGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGAD 114 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~G--advN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GAD 114 (624)
.+..|.|+||.|+..|+.++++.|++ .| .+++.. +..|.||||+|+..|+.+++++|+++ |++
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~ 132 (228)
T 2dzn_A 68 PDDSGWTPFHIACSVGNLEVVKSLYD-RPLKPDLNKI-------------TNQGVTCLHLAVGKKWFEVSQFLIEN-GAS 132 (228)
T ss_dssp CCTTSCCHHHHHHHHCCHHHHHHHHS-SSSCCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCcccccC-------------CcCCCCHHHHHHHcCCHhHHHHHHHc-CCC
Confidence 67788899999999999999999988 66 666655 67889999999999999999999988 899
Q ss_pred ccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCC-CCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHH-HCCCCCccc
Q 006947 115 VNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG-ADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELL-ATDGSVERN 192 (624)
Q Consensus 115 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~G-AD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL-~~gadv~~~ 192 (624)
++.+ +..|.||||+|+..|+ .+++++|++.| ++++.+|..|+||||+|+. .+..+++++|+ +.|++++
T Consensus 133 ~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~~ga~~~-- 202 (228)
T 2dzn_A 133 VRIK-DKFNQIPLHRAASVGS---LKLIELLCGLGKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYD-- 202 (228)
T ss_dssp SCCC-CTTSCCHHHHHHHTTC---HHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSC--
T ss_pred cccc-CCCCCCHHHHHHHcCC---HHHHHHHHhcCcccccCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCCCCC--
Confidence 9988 8889999999999888 89999999998 8999999999999999988 44557778888 7888887
Q ss_pred ccccccccCCCCChhhhhhhcC
Q 006947 193 LRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 193 ~~l~~a~~~~g~TpL~lA~e~G 214 (624)
..+..|.|||++|.+.+
T Consensus 203 -----~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 203 -----LVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp -----CBCTTSCBGGGGCSSTT
T ss_pred -----ccCCCCCcHHHHHHHHH
Confidence 77888899999886654
No 41
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.90 E-value=3.4e-23 Score=202.72 Aligned_cols=165 Identities=24% Similarity=0.248 Sum_probs=102.7
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHh---cCCCCCcccc--------------------cccccccCCccccCCCCc
Q 006947 34 LTVETDDAFASLLELAANNDVEGFKRSIV---CDPSGVDEVG--------------------LWYGRQKGSKQMVNEQRT 90 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe---~~GadvN~~~--------------------l~~~~~~~~~~~D~~G~T 90 (624)
++..|.+|.|+||.||..|++++|+.|++ +.+.+++..+ +++..+.+.+..|..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 81 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT 81 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence 45688999999999999999999999997 4788887663 233344444555555566
Q ss_pred hHHHHHhcCCHHHHHHHHHhcCC----CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcC-CCCCcHHHH
Q 006947 91 PLMVAATYGSIDIIRLILSESGA----DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVD-AKGHHPVDV 165 (624)
Q Consensus 91 PLhlAA~~G~~eiVklLL~~~GA----DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D-~~G~TPLhl 165 (624)
|||+|+..|+.+++++|++. |+ +++.. +..|.||||+|+..|+ .+++++|++.|++++..+ ..|.||||+
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~g~t~L~~ 156 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDS-AAPGTLDLEAR-NYDGLTALHVAVNTEC---QETVQLLLERGADIDAVDIKSGRSPLIH 156 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-SCTTSCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCcccccccc-CcCCCcHHHHHHHcCC---HHHHHHHHHcCCCcccccccCCCcHHHH
Confidence 66666666666666666655 44 55555 5556666666666665 666666666666666655 556666666
Q ss_pred HhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006947 166 IVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 166 Aa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
|+. .+..+++++|++.|++++ ..+..|.||||+|+..|
T Consensus 157 A~~----~~~~~~v~~Ll~~g~~~~-------~~~~~g~t~L~~A~~~~ 194 (241)
T 1k1a_A 157 AVE----NNSLSMVQLLLQHGANVN-------AQMYSGSSALHSASGRG 194 (241)
T ss_dssp HHH----TTCHHHHHHHHHTTCCTT-------CBCTTSCBHHHHHHHHT
T ss_pred HHH----cCCHHHHHHHHHcCCCCC-------CcCCCCCCHHHHHHHcC
Confidence 665 233445556666666655 44556666666666655
No 42
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.90 E-value=5.8e-24 Score=214.17 Aligned_cols=172 Identities=20% Similarity=0.249 Sum_probs=141.6
Q ss_pred ccCccChHHHHHHHHc---CCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006947 36 VETDDAFASLLELAAN---NDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~---Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~G 112 (624)
..+.+|.||||+||.. |+.++|+.||+ .|++++....+. .......|..|.||||+||..|+.++|++||++ |
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~-~ga~~~~~~~~i--~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g 124 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLD-VARKTDSLKQFV--NASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-G 124 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHH-HHHHTTCHHHHH--TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHH-hhccccchhHHh--hcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-C
Confidence 3578999999999987 99999999999 776644321110 112233467899999999999999999999999 9
Q ss_pred CCccccCCC--------------CCChHHHHHHhCCCCChHHHHHHHHH---CCCCCCCcCCCCCcHHHHHhcCCCh--h
Q 006947 113 ADVNLSCGN--------------DKSTALHCAASGGALNAVDVVKLLLA---AGADPNFVDAKGHHPVDVIVVPPKF--Q 173 (624)
Q Consensus 113 ADVN~~~d~--------------~G~TPLH~Aa~~G~~~~~eiVklLL~---~GAD~n~~D~~G~TPLhlAa~~g~~--~ 173 (624)
++++.+ +. .|.||||+|+..|+ .++|++||+ .|++++.+|..|+||||+|+..|+. .
T Consensus 125 a~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~ 200 (273)
T 2pnn_A 125 ADVQAA-ANGDFFKKTKGRPGFYFGELPLSLAACTNQ---LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD 200 (273)
T ss_dssp CCTTCC-BCSGGGSSCSSSCCCCSCBSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred CCcCcc-ccccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchh
Confidence 999998 65 79999999999999 999999999 9999999999999999999985441 1
Q ss_pred ---hHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 174 ---DVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 174 ---~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
...+++++|++.|++++....+....+..|.|||++|++.|.
T Consensus 201 ~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~ 245 (273)
T 2pnn_A 201 NTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence 126788999999988874333334678899999999999994
No 43
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.90 E-value=3.9e-23 Score=195.51 Aligned_cols=137 Identities=24% Similarity=0.254 Sum_probs=130.3
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
..+++..+..|.|+||.||..|+.++|+.|++ .|++++.. |..|.||||+|+..|+.++|++||++
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 94 (179)
T 3f6q_A 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVM-------------NRGDDTPLHLAASHGHRDIVQKLLQY 94 (179)
T ss_dssp TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 44678889999999999999999999999999 89999887 68999999999999999999999999
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006947 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 111 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
|+++|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|.|||++|+. .+..+++++|++.|++++
T Consensus 95 -g~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~----~~~~~~~~~L~~~g~~~~ 165 (179)
T 3f6q_A 95 -KADINAV-NEHGNVPLHYACFWGQ---DQVAEDLVANGALVSICNKYGEMPVDKAKA----PLRELLRERAEKMGQNLN 165 (179)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCSSBCCTTSCCGGGGSCH----HHHHHHHHHHHHTTCCCS
T ss_pred -CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCcchhccCCCCcHHHHHH----HHHHHHHHHHHHhhcCcc
Confidence 9999999 9999999999999999 999999999999999999999999999998 788999999999999987
No 44
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.90 E-value=4.2e-23 Score=210.88 Aligned_cols=152 Identities=24% Similarity=0.288 Sum_probs=111.9
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhc
Q 006947 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSES 111 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~ 111 (624)
+.++.++.+|.|+||.||..|+.++|+.||+ .|+++|.. |.+|+||||+||..|+.++|++|+++
T Consensus 50 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~- 114 (285)
T 3d9h_A 50 NPLMGDAVSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNII-------------TADHVSPLHEACLGGHLSCVKILLKH- 114 (285)
T ss_dssp CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHH-TTCCSCEE-------------CTTCCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred CcccCCCccCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHCCcHHHHHHHHHC-
Confidence 3467788999999999999999999999999 88888876 46677777777777777777777766
Q ss_pred CCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcc
Q 006947 112 GADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVER 191 (624)
Q Consensus 112 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~ 191 (624)
|++++.+ +..|.||||+|+..|+ .++|++|++.|++++..+ .|.||||+|+. .+..+++++|++.|++++
T Consensus 115 ga~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~----~g~~~~v~~Ll~~g~~~~- 184 (285)
T 3d9h_A 115 GAQVNGV-TADWHTPLFNACVSGS---WDCVNLLLQHGASVQPES-DLASPIHEAAR----RGHVECVNSLIAYGGNID- 184 (285)
T ss_dssp TCCSSCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSSCSC-TTSCHHHHHHH----HTCHHHHHHHHHTTCCTT-
T ss_pred CCCCCCC-CCCCCCHHHHHHHcCH---HHHHHHHHHCCCCCCCCC-CCCCHHHHHHH----cCCHHHHHHHHHCCCCCC-
Confidence 6777776 6777777777777777 777777777777766533 37777777776 444556666666776665
Q ss_pred cccccccccCCCCChhhhhhhcC
Q 006947 192 NLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 192 ~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
..+..|.|||++|+..|
T Consensus 185 ------~~d~~g~t~L~~A~~~~ 201 (285)
T 3d9h_A 185 ------HKISHLGTPLYLACENQ 201 (285)
T ss_dssp ------CCBTTTBCHHHHHHHTT
T ss_pred ------CcCCCCCCHHHHHHHcC
Confidence 45566666776666665
No 45
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.90 E-value=3.2e-23 Score=208.28 Aligned_cols=145 Identities=23% Similarity=0.301 Sum_probs=132.5
Q ss_pred cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccC
Q 006947 40 DAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSC 119 (624)
Q Consensus 40 dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~ 119 (624)
+|.|+||.||..|+.++|+.|++ .|+++|.. |.+|.||||+||..|+.++|++|+++ |+++|..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~- 65 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS-QGWAVNII-------------TADHVSPLHEACLGGHLSCVKILLKH-GAQVNGV- 65 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCSSCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-
Confidence 58899999999999999999999 89999887 68999999999999999999999999 9999999
Q ss_pred CCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccc
Q 006947 120 GNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTT 199 (624)
Q Consensus 120 d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~ 199 (624)
+.+|.||||+|+..|+ .++|++|+++|++++. +..|.||||+|+.. +..+++++|++.|++++ ..
T Consensus 66 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~~-------~~ 130 (261)
T 2xai_A 66 TADWHTPLFNACVSGS---WDCVNLLLQHGASVQP-ESDLASPIHEAARR----GHVECVNSLIAYGGNID-------HK 130 (261)
T ss_dssp CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSC-SCTTCCHHHHHHHT----TCHHHHHHHHHTTCCTT-------CC
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCC-CCCCCCHHHHHHHc----CcHHHHHHHHHcCCCCC-------cC
Confidence 9999999999999999 9999999999999986 45699999999994 45678999999999988 67
Q ss_pred cCCCCChhhhhhhcCC
Q 006947 200 SNSNSPPLSPALENGS 215 (624)
Q Consensus 200 ~~~g~TpL~lA~e~Gs 215 (624)
+..|.||||+|++.|.
T Consensus 131 ~~~g~t~L~~A~~~~~ 146 (261)
T 2xai_A 131 ISHLGTPLYLACENQQ 146 (261)
T ss_dssp BTTTBCHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHhCC
Confidence 8889999999998873
No 46
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.90 E-value=6.9e-23 Score=210.57 Aligned_cols=104 Identities=30% Similarity=0.300 Sum_probs=65.9
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
..+++..+..|.||||.||..|+.++|+.|++ .|++++.. |.+|.||||+|+..|+.++|++||++
T Consensus 48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~iv~~Ll~~ 113 (351)
T 3utm_A 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAK-------------DKGGLVPLHNACSYGHYEVTELLLKH 113 (351)
T ss_dssp TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CCCCCcHHHHHHHCCCHHHHHHHHHC
Confidence 34566778889999999999999999999998 88888876 34455555555555555555555554
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCC
Q 006947 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPN 153 (624)
Q Consensus 111 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n 153 (624)
|++++.. +..|.||||+|+..|+ .++|++|+++|++++
T Consensus 114 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~ 151 (351)
T 3utm_A 114 -GACVNAM-DLWQFTPLHEAASKNR---VEVCSLLLSHGADPT 151 (351)
T ss_dssp -TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTT
T ss_pred -CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCc
Confidence 4555554 4455555555555554 444444444444433
No 47
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.90 E-value=3.9e-23 Score=211.10 Aligned_cols=152 Identities=24% Similarity=0.326 Sum_probs=123.8
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
..+++..+.+|.||||+||..|+.++|+.|++ .|++++.. |.+|.||||+|+..|+.++|++|++.
T Consensus 82 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 147 (285)
T 3d9h_A 82 GWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGV-------------TADWHTPLFNACVSGSWDCVNLLLQH 147 (285)
T ss_dssp TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCHHHHHHHHHHC
Confidence 35688889999999999999999999999999 89999876 57888888888888888888888877
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006947 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 111 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
|++++.. .+|.||||+|+..|+ .++|++|++.|++++.+|..|+||||+|+. .+..+++++|++.|++++
T Consensus 148 -g~~~~~~--~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~ 217 (285)
T 3d9h_A 148 -GASVQPE--SDLASPIHEAARRGH---VECVNSLIAYGGNIDHKISHLGTPLYLACE----NQQRACVKKLLESGADVN 217 (285)
T ss_dssp -TCCSSCS--CTTSCHHHHHHHHTC---HHHHHHHHHTTCCTTCCBTTTBCHHHHHHH----TTCHHHHHHHHHTTCCTT
T ss_pred -CCCCCCC--CCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHCCCCCC
Confidence 7888754 458888888888888 888888888888888888888888888887 444567777788887776
Q ss_pred ccccccccccCCCCChhhhhhhcC
Q 006947 191 RNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 191 ~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
.+..|.|||++|+..|
T Consensus 218 --------~~~~g~t~L~~A~~~~ 233 (285)
T 3d9h_A 218 --------QGKGQDSPLHAVVRTA 233 (285)
T ss_dssp --------CCBTTBCHHHHHHHTT
T ss_pred --------CCCCCCCHHHHHHHcC
Confidence 2556777777776554
No 48
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.90 E-value=1.3e-23 Score=196.80 Aligned_cols=135 Identities=24% Similarity=0.270 Sum_probs=123.7
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006947 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~G 112 (624)
.++..+..|.|+||.|+..|+.++|+.|++ .|++++.. |..|.||||+|+..|+.++|++|+++ |
T Consensus 28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g 92 (172)
T 3v30_A 28 LVNKPDERGFTPLIWASAFGEIETVRFLLE-WGADPHIL-------------AKERESALSLASTGGYTDIVGLLLER-D 92 (172)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHTT-T
T ss_pred cccCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhh-------------cccCCCHHHHHHHCCCHHHHHHHHHc-C
Confidence 377888999999999999999999999999 89998877 68899999999999999999999998 9
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006947 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 113 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
++++.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|++++++..
T Consensus 93 ~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~----~~~~~~~~~L~~~~~~~~ 162 (172)
T 3v30_A 93 VDINIY-DWNGGTPLLYAVRGNH---VKCVEALLARGADLTTEADSGYTPMDLAVA----LGYRKVQQVIENHILKLF 162 (172)
T ss_dssp CCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHHHHHHS
T ss_pred CCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHH----hCcHHHHHHHHHHHHHHh
Confidence 999999 9999999999999999 999999999999999999999999999999 455667777777766554
No 49
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=3.1e-23 Score=188.11 Aligned_cols=127 Identities=28% Similarity=0.312 Sum_probs=115.8
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcc
Q 006947 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVN 116 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN 116 (624)
....+.|+||+||..|+.++|+.||+ .|+++|.. |..|.||||+||..|+.++|++||++ |+++|
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~ 74 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMA-NGADVNAK-------------DEYGLTPLYLATAHGHLEIVEVLLKN-GADVN 74 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTT
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence 45678999999999999999999999 89998877 68999999999999999999999998 99999
Q ss_pred ccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCC
Q 006947 117 LSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATD 186 (624)
Q Consensus 117 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~g 186 (624)
.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+.. +..+++++|++.|
T Consensus 75 ~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~----~~~~~~~~Ll~~G 136 (136)
T 2jab_A 75 AV-DAIGFTPLHLAAFIGH---LEIAEVLLKHGADVNAQDKFGKTAFDISIGN----GNEDLAEILQKLN 136 (136)
T ss_dssp CC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHC-
T ss_pred cC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHC----CCHHHHHHHHHcC
Confidence 98 9999999999999999 9999999999999999999999999999994 4567778777765
No 50
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.89 E-value=4.7e-23 Score=218.63 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=146.9
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccc---cCCccccCC
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQ---KGSKQMVNE 87 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~~~---~~~~~~D~~ 87 (624)
..+++..|.+|.||||.|+..|+.++|+.||+ .|++++..+ +++..+ .+.+..|.+
T Consensus 156 ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~ 234 (373)
T 2fo1_E 156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN 234 (373)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT
T ss_pred CCCCcCCCCCCCCHHHHHHHcChHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCC
Confidence 45678889999999999999999999999999 899988754 223333 567778899
Q ss_pred CCchHHHHHhcC---CHHHHHHHHHhcCCCcccc-------CCCCCChHHHHHHhCCCCChHHHHHHHHHCC-CCCCCcC
Q 006947 88 QRTPLMVAATYG---SIDIIRLILSESGADVNLS-------CGNDKSTALHCAASGGALNAVDVVKLLLAAG-ADPNFVD 156 (624)
Q Consensus 88 G~TPLhlAA~~G---~~eiVklLL~~~GADVN~~-------~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~G-AD~n~~D 156 (624)
|.||||+|+..| +.++|++|+++ |++++.. .+..|.||||+|+..|+ .++|++||+.| ++++.+|
T Consensus 235 g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~n~~d 310 (373)
T 2fo1_E 235 GMTALMIVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKYKGRTALHYAAQVSN---MPIVKYLVGEKGSNKDKQD 310 (373)
T ss_dssp SCCHHHHHHHSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC---HHHHHHHHHHSCCCTTCCC
T ss_pred CCCHHHHHHHhCCcchHHHHHHHHHC-CCCcccccccccCcccccCCCHHHHHHHhCC---HHHHHHHHHhcCCCccCcC
Confidence 999999999988 89999999998 8999862 16689999999999999 99999999875 9999999
Q ss_pred CCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 157 AKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 157 ~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
..|+||||+|+. .+..+++++|+++|++++ ..+..|.|||++|+++|.
T Consensus 311 ~~g~TpL~~A~~----~g~~~iv~~Ll~~gad~~-------~~d~~g~t~l~~A~~~g~ 358 (373)
T 2fo1_E 311 EDGKTPIMLAAQ----EGRIEVVMYLIQQGASVE-------AVDATDHTARQLAQANNH 358 (373)
T ss_dssp TTCCCHHHHHHH----HTCHHHHHHHHHTTCCSS-------CCCSSSCCHHHHHHHTTC
T ss_pred CCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc-------CCCCCCCCHHHHHHHcCC
Confidence 999999999998 566788899999999988 778889999999999984
No 51
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.89 E-value=5.4e-23 Score=208.50 Aligned_cols=153 Identities=24% Similarity=0.296 Sum_probs=135.5
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHH
Q 006947 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILS 109 (624)
Q Consensus 30 d~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~ 109 (624)
...+++..+.+|.||||.||..|+.++|+.||+ .|+++|.. |..|.||||+|+..|+.++|++||+
T Consensus 62 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~tpL~~A~~~g~~~~v~~Ll~ 127 (299)
T 1s70_B 62 RGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQP-------------DNEGWIPLHAAASCGYLDIAEYLIS 127 (299)
T ss_dssp HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 345788899999999999999999999999999 89999887 6899999999999999999999999
Q ss_pred hcCCCccccCCC------------------------------------------------------------CCChHHHH
Q 006947 110 ESGADVNLSCGN------------------------------------------------------------DKSTALHC 129 (624)
Q Consensus 110 ~~GADVN~~~d~------------------------------------------------------------~G~TPLH~ 129 (624)
+ |++++.. +. .|.||||+
T Consensus 128 ~-g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~ 205 (299)
T 1s70_B 128 Q-GAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHV 205 (299)
T ss_dssp T-TCCTTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHH
T ss_pred C-CCCCCCc-CCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHH
Confidence 9 9999976 43 46788889
Q ss_pred HHhCCCCChHHHHHHHHHCCCCCCCcCC--CCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChh
Q 006947 130 AASGGALNAVDVVKLLLAAGADPNFVDA--KGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPL 207 (624)
Q Consensus 130 Aa~~G~~~~~eiVklLL~~GAD~n~~D~--~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL 207 (624)
|+..|+ .++|++|+++|+|++ -. .|+||||+|+.. +..+++++|++.|++++ ..+..|.|||
T Consensus 206 A~~~g~---~~~v~~Ll~~g~d~~--~~d~~g~tpL~~A~~~----~~~~~v~~Ll~~gad~~-------~~d~~g~t~l 269 (299)
T 1s70_B 206 AAAKGY---TEVLKLLIQARYDVN--IKDYDGWTPLHAAAHW----GKEEACRILVENLCDME-------AVNKVGQTAF 269 (299)
T ss_dssp HHHHTC---HHHHHHHHTTTCCTT--CCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCCTT-------CCCTTSCCTT
T ss_pred HHHCCc---HHHHHHHHHcCCCCC--CcCCCCCcHHHHHHhc----CCHHHHHHHHHcCCCCC-------CcCCCCCCHH
Confidence 999999 999999999999864 43 689999999994 45678999999999998 7889999999
Q ss_pred hhhhhcC
Q 006947 208 SPALENG 214 (624)
Q Consensus 208 ~lA~e~G 214 (624)
++|.+..
T Consensus 270 ~~A~~~~ 276 (299)
T 1s70_B 270 DVADEDI 276 (299)
T ss_dssp TSCCSGG
T ss_pred HHHHHHH
Confidence 9997644
No 52
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.89 E-value=9.3e-23 Score=194.85 Aligned_cols=148 Identities=22% Similarity=0.261 Sum_probs=135.1
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcccc
Q 006947 39 DDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLS 118 (624)
Q Consensus 39 ~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~ 118 (624)
..+.|+||.||..|+.+.|+.||+..+.++|.. |.+|.||||+|+..|+.++|++||++ |++++..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~ 68 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-------------DTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQ 68 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC
Confidence 457899999999999999999999666688877 68999999999999999999999999 9999998
Q ss_pred CCCCCChHHHHHHhCCCCChHHHHHHHH-HCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCC-CCCccccccc
Q 006947 119 CGNDKSTALHCAASGGALNAVDVVKLLL-AAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATD-GSVERNLRVS 196 (624)
Q Consensus 119 ~d~~G~TPLH~Aa~~G~~~~~eiVklLL-~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~g-adv~~~~~l~ 196 (624)
+..|.||||+|+..|+ .+++++|+ ..+++++..|..|.||||+|+.. +..+++++|++.| ++++
T Consensus 69 -~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~------ 134 (201)
T 3hra_A 69 -NSISDSPYLYAGAQGR---TEILAYMLKHATPDLNKHNRYGGNALIPAAEK----GHIDNVKLLLEDGREDID------ 134 (201)
T ss_dssp -CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHT----TCHHHHHHHHHHCCCCTT------
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHhccCcccccccCCCCcHHHHHHHc----CCHHHHHHHHHcCCCCcC------
Confidence 9999999999999999 99999999 66889999999999999999994 4567888899888 7777
Q ss_pred ccccCCCCChhhhhhhcCC
Q 006947 197 TTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 197 ~a~~~~g~TpL~lA~e~Gs 215 (624)
..+..|.||||+|+..|.
T Consensus 135 -~~~~~g~t~L~~A~~~~~ 152 (201)
T 3hra_A 135 -FQNDFGYTALIEAVGLRE 152 (201)
T ss_dssp -CCCTTSCCHHHHHHHSSC
T ss_pred -CCCCCCCCHHHHHHHhcc
Confidence 678899999999998874
No 53
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.89 E-value=3.2e-23 Score=217.29 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=116.1
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhc
Q 006947 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSES 111 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~ 111 (624)
-+.+..|.+|.|+||+||..|++++|+.||+ .|+++|.. |..|.||||+||..|+.++|++||++
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~- 75 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQ-------------NRFGCTALHLACKFGCVDTAKYLASV- 75 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHCCHHHHHHHHHH-
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-------------CCCCCcHHHHHHHcCCHHHHHHHHHC-
Confidence 3455678899999999999999999999999 89999877 46667777777777777777777766
Q ss_pred CCCccc----------------------------------------------------cCCCCCChHHHHHHhCC--CCC
Q 006947 112 GADVNL----------------------------------------------------SCGNDKSTALHCAASGG--ALN 137 (624)
Q Consensus 112 GADVN~----------------------------------------------------~~d~~G~TPLH~Aa~~G--~~~ 137 (624)
|++++. . +..|.||||+|+..| +
T Consensus 76 g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~-- 152 (364)
T 3ljn_A 76 GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVK-HCKGQTALHWCVGLGPEY-- 152 (364)
T ss_dssp CCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEE-EESCCCHHHHHHHSCGGG--
T ss_pred CCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccC-CCCCCCHHHHHHHcCCch--
Confidence 555543 4 556788888888887 7
Q ss_pred hHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCC-----CcccccccccccCCCCChhhhhhh
Q 006947 138 AVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGS-----VERNLRVSTTTSNSNSPPLSPALE 212 (624)
Q Consensus 138 ~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gad-----v~~~~~l~~a~~~~g~TpL~lA~e 212 (624)
.++|++||++|++++.+|..|+||||+|+. .+..+++++|++.|++ ++ ..+..|.||||+|+.
T Consensus 153 -~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~g~~~~~~~~~-------~~~~~g~t~L~~A~~ 220 (364)
T 3ljn_A 153 -LEMIKILVQLGASPTAKDKADETPLMRAME----FRNREALDLMMDTVPSKSSLRLD-------YANKQGNSHLHWAIL 220 (364)
T ss_dssp -HHHHHHHHHHTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHCSCSSSCCTT-------CCCTTCCCTTHHHHT
T ss_pred -HHHHHHHHHcCCCCcccCCCCCCHHHHHHH----cCCHHHHHHHHhccccccccccc-------ccCCCCCcHHHHHHH
Confidence 888888888888888888888888888887 3445677777777776 44 566778888888887
Q ss_pred cCC
Q 006947 213 NGS 215 (624)
Q Consensus 213 ~Gs 215 (624)
.|.
T Consensus 221 ~g~ 223 (364)
T 3ljn_A 221 INW 223 (364)
T ss_dssp TTC
T ss_pred cCC
Confidence 774
No 54
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.89 E-value=8.4e-23 Score=219.03 Aligned_cols=167 Identities=22% Similarity=0.236 Sum_probs=139.2
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccccCCccccCCCCch
Q 006947 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQKGSKQMVNEQRTP 91 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~~~~~~~~~D~~G~TP 91 (624)
.+++..+.+|.|+||.|+..|+.++++.|++ .|++++..+ +++..+.+.+..+..|.||
T Consensus 203 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~ 281 (437)
T 1n11_A 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP 281 (437)
T ss_dssp CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCH
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 3455566667777777777777777777776 666665432 2334455556668899999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCC
Q 006947 92 LMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPK 171 (624)
Q Consensus 92 LhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~ 171 (624)
||+|+..|+.+++++|+++ |+++|.+ +..|.||||+|+..|+ .++|++|+++|+|+|.+|..|+||||+|+.
T Consensus 282 L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~--- 353 (437)
T 1n11_A 282 LHLVAQEGHVPVADVLIKH-GVMVDAT-TRMGYTPLHVASHYGN---IKLVKFLLQHQADVNAKTKLGYSPLHQAAQ--- 353 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHH-TCCTTCC-CSSCCCHHHHHHHSSC---SHHHHHHHHTTCCTTCCCTTSCCHHHHHHH---
T ss_pred HHHHHHcCCHHHHHHHHhC-CccCCCC-CCCCCCHHHHHHHcCc---HHHHHHHHhcCCCCCCCCCCCCCHHHHHHH---
Confidence 9999999999999999998 9999998 8999999999999999 999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 172 FQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 172 ~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
.+..+++++|+++|++++ ..+..|.|||++|.+.|.
T Consensus 354 -~g~~~iv~~Ll~~ga~~~-------~~~~~g~t~l~~A~~~g~ 389 (437)
T 1n11_A 354 -QGHTDIVTLLLKNGASPN-------EVSSDGTTPLAIAKRLGY 389 (437)
T ss_dssp -TTCHHHHHHHHHTTCCSC-------CCCSSSCCHHHHHHHTTC
T ss_pred -CChHHHHHHHHHCcCCCC-------CCCCCCCCHHHHHHHcCc
Confidence 455678999999999998 778899999999999984
No 55
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=7.8e-23 Score=179.92 Aligned_cols=126 Identities=33% Similarity=0.448 Sum_probs=118.0
Q ss_pred cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccC
Q 006947 40 DAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSC 119 (624)
Q Consensus 40 dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~ 119 (624)
+|.|+||.|+..|+.++++.|++ .|.+++.. +..|.||||+|+..|+.+++++|++. |++++.+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~- 64 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAK-------------DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK- 64 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCccHHHHHHHcCcHHHHHHHHH-cCCCCCCc-------------CCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCccc-
Confidence 58899999999999999999999 78888876 68899999999999999999999998 9999998
Q ss_pred CCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCC
Q 006947 120 GNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGS 188 (624)
Q Consensus 120 d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gad 188 (624)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. .+..+++++|+++|++
T Consensus 65 ~~~g~t~l~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 65 DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAAR----NGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHTCC
T ss_pred CCCCCcHHHHHHHcCh---HHHHHHHHHcCCCCcccCCCCCCHHHHHHH----cCcHHHHHHHHHcCCC
Confidence 9999999999999999 999999999999999999999999999998 4567888889988875
No 56
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.89 E-value=1e-22 Score=191.10 Aligned_cols=133 Identities=29% Similarity=0.366 Sum_probs=122.1
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
..+++..+.+|.|+||.|+..|+.++|+.|++ .|++++.. |..|.||||+|+..|+.+++++|+++
T Consensus 37 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~ 102 (169)
T 2y1l_E 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAV-------------DHAGMTPLRLAALFGHLEIVEVLLKN 102 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 44677889999999999999999999999999 89998876 68899999999999999999999998
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCC
Q 006947 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATD 186 (624)
Q Consensus 111 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~g 186 (624)
|++++.+ +..|.||||+|+..|+ .++|++|+++|+|++.+|..|.||||+|+.. +..+++++|++.|
T Consensus 103 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~----~~~~~~~~L~~~G 169 (169)
T 2y1l_E 103 -GADVNAN-DMEGHTPLHLAAMFGH---LEIVEVLLKNGADVNAQDKFGKTAFDISIDN----GNEDLAEILQKLN 169 (169)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHTC-
T ss_pred -CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh----CCHHHHHHHHHcC
Confidence 9999998 9999999999999999 9999999999999999999999999999994 4566778777664
No 57
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=3.4e-23 Score=187.52 Aligned_cols=129 Identities=27% Similarity=0.317 Sum_probs=117.4
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCc
Q 006947 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADV 115 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADV 115 (624)
.++.+|.|+||.||..|+.++++.||+ .|++++.. |..|.||||+|+..|+.+++++|+++ |+++
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~ 69 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVK-------------DHAGWTPLHEACNHGHLKVVELLLQH-KALV 69 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCcc
Confidence 578899999999999999999999999 89998876 68999999999999999999999998 9999
Q ss_pred cccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCC
Q 006947 116 NLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDG 187 (624)
Q Consensus 116 N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~ga 187 (624)
+.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+. ....+++++|.+.+.
T Consensus 70 ~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~----~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 70 NTT-GYQNDSPLHDAAKNGH---VDIVKLLLSYGASRNAVNIFGLRPVDYTDD----ESMKSLLLLPEKNES 133 (137)
T ss_dssp TCC-CGGGCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCGGGGCCC----HHHHHHHSCC-----
T ss_pred cCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHhh----ccHHHHHhhcccccc
Confidence 998 9999999999999999 999999999999999999999999999998 778888877665543
No 58
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.89 E-value=1.4e-22 Score=210.14 Aligned_cols=172 Identities=23% Similarity=0.282 Sum_probs=148.0
Q ss_pred CCCcccCc-cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccccCCccccCCCCc
Q 006947 32 NHLTVETD-DAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQKGSKQMVNEQRT 90 (624)
Q Consensus 32 ~~ini~d~-dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~~~~~~~~~D~~G~T 90 (624)
-+++..+. .|+||||+||..|+.++|+.||+ .|++++..+ .+...+.+.+..|..|.|
T Consensus 49 advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t 127 (337)
T 4g8k_A 49 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFT 127 (337)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCB
T ss_pred CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCC
Confidence 46676665 48999999999999999999999 999988754 234456677888999999
Q ss_pred hHHHHHhcCCHHHHHHHHHhcCCCccccC---------CCCCChHHHHHHhCCCCChHHHHHHHHH-CCCCCCCcCCCCC
Q 006947 91 PLMVAATYGSIDIIRLILSESGADVNLSC---------GNDKSTALHCAASGGALNAVDVVKLLLA-AGADPNFVDAKGH 160 (624)
Q Consensus 91 PLhlAA~~G~~eiVklLL~~~GADVN~~~---------d~~G~TPLH~Aa~~G~~~~~eiVklLL~-~GAD~n~~D~~G~ 160 (624)
|||+|+..|+.+++++|+++ |++++... +..|.||||+|+..|+ .++|++||+ .|+|++.+|..|.
T Consensus 128 ~l~~A~~~~~~~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~---~~~v~~LL~~~gad~n~~d~~g~ 203 (337)
T 4g8k_A 128 AFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVLKILLDEMGADVNACDNMGR 203 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHHHTC---HHHHHHHHHHSCCCTTCCCTTSC
T ss_pred HHHHHHHcCcHHHHHHHHHc-CCCcchhhccccccccccCCCCcHHHHHHHCCC---HHHHHHHHhccCCCcCccCCCCC
Confidence 99999999999999999998 89988641 3468999999999999 999999996 6999999999999
Q ss_pred cHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 161 HPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 161 TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
|+++.++..+.......++++|+++|++++ ..+..|.||||+|++.|.
T Consensus 204 t~l~~~~~~~~~~~~~~i~~lLl~~gad~n-------~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 204 NALIHALLSSDDSDVEAITHLLLDHGADVN-------VRGERGKTPLILAVEKKH 251 (337)
T ss_dssp CHHHHHHHHSCTTTHHHHHHHHHHTTCCTT-------CCCGGGCCHHHHHHHTTC
T ss_pred cHHHHHHHHcCcccHHHHHHHHHHCCCCCC-------CcCCCCCCHHHHHHHhhh
Confidence 999998876666778889999999999998 677788899998888873
No 59
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.89 E-value=5.7e-23 Score=190.01 Aligned_cols=134 Identities=20% Similarity=0.208 Sum_probs=122.9
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
..+++..+..|.|+||.|+. |+.++++.|++ .|++++.. |..|.||||+|+..|+.++|++|+++
T Consensus 28 ~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 92 (162)
T 1ihb_A 28 NVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLK-------------DRTGFAVIHDAARAGFLDTLQTLLEF 92 (162)
T ss_dssp CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 45677888999999999999 99999999999 89999877 68999999999999999999999998
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCC-CCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCC
Q 006947 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGAD-PNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGS 188 (624)
Q Consensus 111 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD-~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gad 188 (624)
|+++|.+ +..|.||||+|+..|+ .++|++|+++|++ ++.+|..|.||||+|+. .+..+++++|+++|++
T Consensus 93 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 93 -QADVNIE-DNEGNLPLHLAAKEGH---LRVVEFLVKHTASNVGHRNHKGDTACDLARL----YGRNEVVSLMQANGAG 162 (162)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTC--
T ss_pred -CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHccCCCCCCcCCCCCcHHHHHHH----cCCHHHHHHHHHhCCC
Confidence 9999999 9999999999999999 9999999999998 69999999999999998 5567889999999875
No 60
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=3.6e-23 Score=200.25 Aligned_cols=152 Identities=12% Similarity=0.072 Sum_probs=132.7
Q ss_pred cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCH----HHHHHHHHhcCCCc
Q 006947 40 DAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSI----DIIRLILSESGADV 115 (624)
Q Consensus 40 dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~----eiVklLL~~~GADV 115 (624)
.++++|+.||..|+++.|+.++. .+ ++..+ +..|+||||+|+..|+. ++|++||++ |+||
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~~-~~--~~~~~------------~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadv 68 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELFE-KG--YEDKE------------SVLKSNILYDVLRNNNDEARYKISMFLINK-GADI 68 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHHH-HS--SSCHH------------HHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCS
T ss_pred ccccHHHHHHHcCCHHHHHHHHh-cC--ccccc------------ccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCC
Confidence 35688999999999999999998 33 34332 36799999999999985 599999998 9999
Q ss_pred cccCCCCCChHHHHHHhCCCCCh---HHHHHHHHHCCCCCCCcCCCCC-cHHHHHhcCCCh-hhHHHHHHHHHH-CCCCC
Q 006947 116 NLSCGNDKSTALHCAASGGALNA---VDVVKLLLAAGADPNFVDAKGH-HPVDVIVVPPKF-QDVRLTLEELLA-TDGSV 189 (624)
Q Consensus 116 N~~~d~~G~TPLH~Aa~~G~~~~---~eiVklLL~~GAD~n~~D~~G~-TPLhlAa~~g~~-~~~~~lLe~LL~-~gadv 189 (624)
|.+ +.+|+||||+|+..|+.+. .++|++||++|||+|.+|..|+ ||||+|+..+.. .....++++|++ .|+++
T Consensus 69 n~~-d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~ 147 (186)
T 3t8k_A 69 KSR-TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL 147 (186)
T ss_dssp SCC-CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT
T ss_pred CCC-CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC
Confidence 999 9999999999999887432 5889999999999999999999 999999985543 456789999999 99999
Q ss_pred cccccccccccCCCCChhhhhhhcCC
Q 006947 190 ERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 190 ~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
+ ..+..|.|||++|.+.|.
T Consensus 148 ~-------~~d~~G~TpL~~A~~~~~ 166 (186)
T 3t8k_A 148 L-------IKDKWGLTALEFVKRCQK 166 (186)
T ss_dssp T-------CCCTTSCCHHHHHHTTTC
T ss_pred c-------ccCCCCCCHHHHHHHcCC
Confidence 9 889999999999999884
No 61
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.89 E-value=3.4e-22 Score=199.02 Aligned_cols=166 Identities=23% Similarity=0.284 Sum_probs=128.0
Q ss_pred CccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc--------------------cccccccCCccccCCCCchHHHHHh
Q 006947 38 TDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------LWYGRQKGSKQMVNEQRTPLMVAAT 97 (624)
Q Consensus 38 d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------l~~~~~~~~~~~D~~G~TPLhlAA~ 97 (624)
+..|.|+||.|+..|+.++|+.|++ .|++++..+ +++..+.+.+..|..|.||||+|+.
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 114 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHH
Confidence 5556677777777777777777776 666665442 2333444455557888888888888
Q ss_pred cCCHHHHHHHHHhcCCCccccC---------CCCCChHHHHHHhCCCCChHHHHHHHHHC-CCCCCCcCCCCCcHHHHHh
Q 006947 98 YGSIDIIRLILSESGADVNLSC---------GNDKSTALHCAASGGALNAVDVVKLLLAA-GADPNFVDAKGHHPVDVIV 167 (624)
Q Consensus 98 ~G~~eiVklLL~~~GADVN~~~---------d~~G~TPLH~Aa~~G~~~~~eiVklLL~~-GAD~n~~D~~G~TPLhlAa 167 (624)
.|+.+++++|+++ |++++... +..|.||||+|+..|+ .+++++|++. |++++.+|..|+||||+|+
T Consensus 115 ~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~ 190 (285)
T 1wdy_A 115 YGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVLKILLDEMGADVNACDNMGRNALIHAL 190 (285)
T ss_dssp TTCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC---HHHHHHHHHTSCCCTTCCCTTSCCHHHHHH
T ss_pred hCCHHHHHHHHHh-CCCcccccccHHHHHhhccCCCcHHHHHHHcCC---HHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 8888888888887 78887652 4568888888888888 8888888887 8888888888888888888
Q ss_pred cCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 168 VPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 168 ~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
..++.....+++++|++.|++++ ..+..|.||||+|++.|.
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~-------~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVN-------VRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSS-------CCCTTSCCHHHHHHHTTC
T ss_pred HccccchHHHHHHHHHHcCCCCC-------CcCCCCCcHHHHHHHcCC
Confidence 87777777888888898888887 667788999999988874
No 62
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.88 E-value=1e-22 Score=218.46 Aligned_cols=153 Identities=25% Similarity=0.341 Sum_probs=127.9
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006947 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~G 112 (624)
+++..++.|.||||.||..|++++|++|++ .|+++|.. +..|.||||+||..|+.++|++|+++ |
T Consensus 6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------~~~~~t~L~~A~~~g~~~~v~~Ll~~-g 70 (437)
T 1n11_A 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQ-RGASPNVS-------------NVKVETPLHMAARAGHTEVAKYLLQN-K 70 (437)
T ss_dssp ---------CCHHHHHHHHTCHHHHHHHHH-TTCCSCCS-------------SSCCCCHHHHHHHHTCHHHHHHHHHH-T
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHhC-C
Confidence 567788999999999999999999999999 89999876 57889999999999999999999988 8
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccc
Q 006947 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERN 192 (624)
Q Consensus 113 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~ 192 (624)
+++|.+ +.+|.||||+|+..|+ .++|++|+++|++++..|..|.||||+|+. .+..++++.|++.+++..
T Consensus 71 ~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~~~~~~-- 140 (437)
T 1n11_A 71 AKVNAK-AKDDQTPLHCAARIGH---TNMVKLLLENNANPNLATTAGHTPLHIAAR----EGHVETVLALLEKEASQA-- 140 (437)
T ss_dssp CCSSCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCSC--
T ss_pred CCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHhCCCCCCCCCCCCCcHHHHHHH----cCCHHHHHHHHhCCCCCc--
Confidence 999988 8899999999999999 999999999999999999999999999998 555677888888888776
Q ss_pred ccccccccCCCCChhhhhhhcCC
Q 006947 193 LRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 193 ~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
..+..|.|||++|+..|.
T Consensus 141 -----~~~~~g~t~L~~A~~~g~ 158 (437)
T 1n11_A 141 -----CMTKKGFTPLHVAAKYGK 158 (437)
T ss_dssp -----CCCTTSCCHHHHHHHTTC
T ss_pred -----CCCCCCCCHHHHHHHcCC
Confidence 556778888888888873
No 63
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.88 E-value=1.4e-22 Score=188.68 Aligned_cols=132 Identities=26% Similarity=0.277 Sum_probs=119.9
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhc
Q 006947 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSES 111 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~ 111 (624)
.+++..+..|.|+||.|+..|+.++|+.|++ .|++++.. |.+|+||||+|+..|+.++|++|+++
T Consensus 33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~- 97 (165)
T 3twr_A 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAK-------------DKGGLVPLHNACSYGHYEVAELLVKH- 97 (165)
T ss_dssp TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred CCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCcc-------------CCCCCCHHHHHHHcCcHHHHHHHHhC-
Confidence 4555667788999999999999999999999 89999877 68999999999999999999999998
Q ss_pred CCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCC
Q 006947 112 GADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDG 187 (624)
Q Consensus 112 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~ga 187 (624)
|+++|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. +..+++++|++.|+
T Consensus 98 g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-----~~~~i~~~L~~~gA 164 (165)
T 3twr_A 98 GAVVNVA-DLWKFTPLHEAAAKGK---YEICKLLLQHGADPTKKNRDGNTPLDLVKD-----GDTDIQDLLRGDAA 164 (165)
T ss_dssp TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-----TCHHHHHHHHTC--
T ss_pred CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCChhHhHhc-----CChHHHHHHhhccc
Confidence 9999999 9999999999999999 999999999999999999999999999775 33488999998875
No 64
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.88 E-value=3.3e-23 Score=211.91 Aligned_cols=133 Identities=20% Similarity=0.158 Sum_probs=91.2
Q ss_pred CCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhc
Q 006947 32 NHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSES 111 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~ 111 (624)
.+++..|.+|.||||+||..|+.++|+.||+ .|+++|.. +|+||||+|+..|+.++|++||++
T Consensus 22 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~---------------~g~t~L~~A~~~g~~~~v~~Ll~~- 84 (285)
T 3kea_A 22 KDTFKADVHGHSASYYAIADNNVRLVCTLLN-AGALKNLL---------------ENEFPLHQAATLEDTKIVKILLFS- 84 (285)
T ss_dssp TTTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTGGGSCC---------------TTCCHHHHHTTSSSCHHHHHHHHT-
T ss_pred CCCCccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCC---------------CCCCHHHHHHHcCCHHHHHHHHHC-
Confidence 3688999999999999999999999999999 89988864 356666666666666666666655
Q ss_pred CCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCC-CcHHHHHhcCCChhhHHHHHHHHHHCCCCC
Q 006947 112 GADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKG-HHPVDVIVVPPKFQDVRLTLEELLATDGSV 189 (624)
Q Consensus 112 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G-~TPLhlAa~~g~~~~~~~lLe~LL~~gadv 189 (624)
|+++|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..| .||||+|+.. +..+++++|++.|++.
T Consensus 85 ga~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~----~~~~~v~~Ll~~g~~~ 155 (285)
T 3kea_A 85 GLDDSQF-DDKGNTALYYAVDSGN---MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML----NDVSIVSYFLSEIPST 155 (285)
T ss_dssp TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT----TCHHHHHHHHTTSCTT
T ss_pred CCCCCCc-CCCCCcHHHHHHHcCC---HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc----CCHHHHHHHHhCCCcc
Confidence 5666665 5566666666666666 666666666666666666666 5666666652 3334555555555444
No 65
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.88 E-value=3.3e-22 Score=205.43 Aligned_cols=159 Identities=23% Similarity=0.225 Sum_probs=122.6
Q ss_pred cCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHH
Q 006947 30 DMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILS 109 (624)
Q Consensus 30 d~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~ 109 (624)
...+++..+.+|.||||.|+..|+.++|+.|++ .|++++.. |..|.||||+|+..|+.++|++|++
T Consensus 80 ~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 80 HGADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAM-------------DLWQFTPLHEAASKNRVEVCSLLLS 145 (351)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 345677888899999999999999999999999 88888876 5778888888888888888888887
Q ss_pred hcCCCcccc-----------------------------------------------------CCCCCChHHHHHHhCCCC
Q 006947 110 ESGADVNLS-----------------------------------------------------CGNDKSTALHCAASGGAL 136 (624)
Q Consensus 110 ~~GADVN~~-----------------------------------------------------~d~~G~TPLH~Aa~~G~~ 136 (624)
+ |++++.. .+..|.||||+|+..++.
T Consensus 146 ~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~ 224 (351)
T 3utm_A 146 H-GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHP 224 (351)
T ss_dssp T-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCST
T ss_pred c-CCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCc
Confidence 7 7777653 124567888888887655
Q ss_pred ChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006947 137 NAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 137 ~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
+..+++++|++.|++++.+|..|+||||+|+.. +..+++++|++.|++++ ..+..|.||||+|+..|
T Consensus 225 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~ga~~n-------~~d~~g~t~L~~A~~~~ 291 (351)
T 3utm_A 225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAER----AHNDVMEVLHKHGAKMN-------ALDSLGQTALHRAALAG 291 (351)
T ss_dssp THHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCCTT-------CCCTTSCCHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCCC-------CcCCCCCCHHHHHHHcC
Confidence 557788888888888888888888888888873 44467777777887777 56667777777776654
No 66
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.88 E-value=5.1e-22 Score=185.15 Aligned_cols=133 Identities=24% Similarity=0.326 Sum_probs=120.8
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
..+++..+..|.|+||.|+..|+.++|+.|++ .|++++.. +..|.||||+|+..|+.++|++|++.
T Consensus 26 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 91 (167)
T 3v31_A 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLL-------------GKGRESALSLACSKGYTDIVKMLLDC 91 (167)
T ss_dssp SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCc-------------CCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 45688889999999999999999999999999 79999876 68899999999999999999999999
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCC
Q 006947 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATD 186 (624)
Q Consensus 111 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~g 186 (624)
|++++.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+..|+ .+++++|++++
T Consensus 92 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----~~~~~~L~~~~ 158 (167)
T 3v31_A 92 -GVDVNEY-DWNGGTPLLYAVHGNH---VKCVKMLLESGADPTIETDSGYNSMDLAVALGY----RSVQQVIESHL 158 (167)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHHH
T ss_pred -CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc----HHHHHHHHHHH
Confidence 9999999 9999999999999999 999999999999999999999999999999554 45555555544
No 67
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.88 E-value=9.6e-23 Score=203.04 Aligned_cols=149 Identities=19% Similarity=0.158 Sum_probs=128.7
Q ss_pred ChHHHHHHHHcCCHHHH----HHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhc---CCHHHHHHHHHhcCC
Q 006947 41 AFASLLELAANNDVEGF----KRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATY---GSIDIIRLILSESGA 113 (624)
Q Consensus 41 g~TpLh~AA~~Gdle~V----k~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~---G~~eiVklLL~~~GA 113 (624)
|.|+||.||..|+.+.| +.|++ .|+++|... ...|.+|+||||+||.. |+.++|++||+. |+
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~---------~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~ 70 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRW-NSKYLTDSA---------YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DK 70 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGG---------GSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HH
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHH-cCCCccccc---------ccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CC
Confidence 78999999999999855 55555 888888711 01278999999999999 999999999998 88
Q ss_pred CccccC----------CCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCC-------------CCcHHHHHhcCC
Q 006947 114 DVNLSC----------GNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAK-------------GHHPVDVIVVPP 170 (624)
Q Consensus 114 DVN~~~----------d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~-------------G~TPLhlAa~~g 170 (624)
+++... +..|.||||+|+..|+ .++|++||++|++++.+|.. |.||||+|+.
T Consensus 71 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~-- 145 (256)
T 2etb_A 71 DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS---LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC-- 145 (256)
T ss_dssp HTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHH--
T ss_pred cccchhhhcccccccccccCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHH--
Confidence 877431 3679999999999999 99999999999999999987 9999999999
Q ss_pred ChhhHHHHHHHHHH---CCCCCcccccccccccCCCCChhhhhhhcC
Q 006947 171 KFQDVRLTLEELLA---TDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 171 ~~~~~~~lLe~LL~---~gadv~~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
.+..+++++|++ .|++++ ..+..|.||||+|+..|
T Consensus 146 --~~~~~~v~~Ll~~~~~ga~~n-------~~d~~g~TpLh~A~~~~ 183 (256)
T 2etb_A 146 --TKQWDVVTYLLENPHQPASLE-------ATDSLGNTVLHALVMIA 183 (256)
T ss_dssp --TTCHHHHHHHHHCSSCCCCTT-------CCCTTSCCHHHHHHHHC
T ss_pred --cCCHHHHHHHHhccccCCCcC-------ccCCCCCCHHHHHHHcc
Confidence 455689999999 899998 78889999999999844
No 68
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=2.8e-22 Score=178.39 Aligned_cols=119 Identities=27% Similarity=0.384 Sum_probs=108.4
Q ss_pred CccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccc
Q 006947 38 TDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNL 117 (624)
Q Consensus 38 d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~ 117 (624)
+..|.|+||.|+..|++++|+.|++ .|.+++.. |..|+||||+||..|+.++|++||+. |+++|.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~ 68 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRT-------------LEGGRKPLHYAADCGQLEILEFLLLK-GADINA 68 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSC-------------CTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTC
T ss_pred ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCcc-------------CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCc
Confidence 3568899999999999999999999 88998877 68999999999999999999999988 999999
Q ss_pred cCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHH
Q 006947 118 SCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTL 179 (624)
Q Consensus 118 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lL 179 (624)
+ +..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+|.. ....+++
T Consensus 69 ~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~----~~~~~ll 122 (123)
T 3aaa_C 69 P-DKHHITPLLSAVYEGH---VSCVKLLLSKGADKTVKGPDGLTAFEATDN----QAIKALL 122 (123)
T ss_dssp C-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCC----HHHHHHH
T ss_pred C-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHhCC----HHHHHHh
Confidence 9 9999999999999999 999999999999999999999999999976 5555544
No 69
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.88 E-value=8.2e-23 Score=203.20 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=128.8
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006947 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~G 112 (624)
+++. +..+.|+||.|+..|++++|+.||+ .|+++|.. |.+|+||||+||..|+.++|++||++ |
T Consensus 30 ~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-g 93 (239)
T 1ycs_B 30 RVKF-NPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLP-------------NDEGITALHNAVCAGHTEIVKFLVQF-G 93 (239)
T ss_dssp --------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHH-T
T ss_pred Cccc-CchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-C
Confidence 4443 3678999999999999999999998 88899887 68999999999999999999999998 9
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCC-cHHHHH--hcCCChhhHHHHHHHHHHCCCCC
Q 006947 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGH-HPVDVI--VVPPKFQDVRLTLEELLATDGSV 189 (624)
Q Consensus 113 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~-TPLhlA--a~~g~~~~~~~lLe~LL~~gadv 189 (624)
+++|.+ +..|+||||+|+..|+ .++|++|+++|+|++.+|..|. ||||+| +..|+ .+++++|++.++++
T Consensus 94 a~~~~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~----~~~~~~Ll~~~a~~ 165 (239)
T 1ycs_B 94 VNVNAA-DSDGWTPLHCAASCNN---VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY----TQCSQFLYGVQEKM 165 (239)
T ss_dssp CCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTC----CCHHHHHHHHHHHT
T ss_pred CCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhcc----HHHHHHHHHhhhcc
Confidence 999999 9999999999999999 9999999999999999998887 999999 55444 44566666666655
Q ss_pred cc--cccccccccCCCCChhhhhhhcCC
Q 006947 190 ER--NLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 190 ~~--~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
+. ........+..+.++++++.+.|.
T Consensus 166 ~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 166 GIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp TTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred cccccceEEEEeccCCCCCCcccccCCC
Confidence 51 111122336677888888888884
No 70
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.88 E-value=5.7e-22 Score=192.79 Aligned_cols=153 Identities=24% Similarity=0.251 Sum_probs=123.6
Q ss_pred CcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCC
Q 006947 34 LTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGA 113 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GA 113 (624)
++..|+.+.++|+.|+..|++++|+.|++ .|++++.. +..|.||||+|+..|+.++|++|+++ |+
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~ 66 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVE-AGYDVRQP-------------DKENVTLLHWAAINNRIDLVKYYISK-GA 66 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHH-cCCCcCCC-------------CCCCCCHHHHHHHhCCHHHHHHHHHc-CC
Confidence 45567778888888888888888888888 77887766 57788888888888888888888888 78
Q ss_pred CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccc
Q 006947 114 DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNL 193 (624)
Q Consensus 114 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~ 193 (624)
+++...+..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+.. +..+++++|++.|++++
T Consensus 67 ~~~~~~~~~~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~----~~~~~~~~Ll~~~~~~~--- 136 (240)
T 3eu9_A 67 IVDQLGGDLNSTPLHWATRQGH---LSMVVQLMKYGADPSLIDGEGCSCIHLAAQF----GHTSIVAYLIAKGQDVD--- 136 (240)
T ss_dssp CTTCCBTTTTBCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCTT---
T ss_pred cchhhcCCcCCChhHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHc----CHHHHHHHHHhcCCCcc---
Confidence 8876645568888888888888 8888888888888888888888888888884 44567788888888776
Q ss_pred cccccccCCCCChhhhhhhcCC
Q 006947 194 RVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 194 ~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
..+..|.|||++|+..|.
T Consensus 137 ----~~~~~g~t~l~~a~~~~~ 154 (240)
T 3eu9_A 137 ----MMDQNGMTPLMWAAYRTH 154 (240)
T ss_dssp ----CCCTTSCCHHHHHHHHCC
T ss_pred ----ccCCCCCcHHHHHHHhCC
Confidence 566778888888886663
No 71
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.88 E-value=8.9e-22 Score=195.98 Aligned_cols=154 Identities=25% Similarity=0.264 Sum_probs=120.0
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcccc
Q 006947 39 DDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLS 118 (624)
Q Consensus 39 ~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~ 118 (624)
.+|.|+||.|+..|++++|+.|++ .|.+++... +..|.||||+|+..|+.++|++||++ |++++..
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~ 68 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQE------------EEGGWTPLHNAVQMSREDIVELLLRH-GADPVLR 68 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCC------------TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred cccchHHHHHHHcCCHHHHHHHHH-cCCCccccc------------CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCccc
Confidence 468999999999999999999999 899988763 56788888888888888888888887 7888887
Q ss_pred CCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccccc---c
Q 006947 119 CGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLR---V 195 (624)
Q Consensus 119 ~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~---l 195 (624)
+.+|.||||+|+..|+ .+++++|+++|++++..|..|.||||+|+.. +..+++++|++.|++++.... .
T Consensus 69 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~----~~~~~~~~Ll~~g~~~~~~~~~~~~ 140 (285)
T 1wdy_A 69 -KKNGATPFLLAAIAGS---VKLLKLFLSKGADVNECDFYGFTAFMEAAVY----GKVKALKFLYKRGANVNLRRKTKED 140 (285)
T ss_dssp -CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT----TCHHHHHHHHHTTCCTTCCCCCCHH
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCcccCCHHHHHHHh----CCHHHHHHHHHhCCCcccccccHHH
Confidence 7888888888888888 8888888888888888888888888888874 445677777777777652211 1
Q ss_pred cccccCCCCChhhhhhhcC
Q 006947 196 STTTSNSNSPPLSPALENG 214 (624)
Q Consensus 196 ~~a~~~~g~TpL~lA~e~G 214 (624)
....+..|.|||++|+..|
T Consensus 141 ~~~~~~~g~t~L~~A~~~~ 159 (285)
T 1wdy_A 141 QERLRKGGATALMDAAEKG 159 (285)
T ss_dssp HHHTTCCCCCHHHHHHHHT
T ss_pred HHhhccCCCcHHHHHHHcC
Confidence 1123456667777766654
No 72
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.87 E-value=7.7e-23 Score=203.43 Aligned_cols=146 Identities=21% Similarity=0.214 Sum_probs=101.6
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcccc
Q 006947 39 DDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLS 118 (624)
Q Consensus 39 ~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~ 118 (624)
..|.|+||.|+..|+.+.++.||+ .|++++.. ..|.||||+|+..|+.++|++||+. |+++|.+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~--------------~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~ 66 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIA-HGMRVKFN--------------PLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLP 66 (239)
T ss_dssp -------------------------------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCC
T ss_pred ccccccCchhhhhhhHHHHHHHhc-cCCCcccC--------------chhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCc
Confidence 468999999999999999999999 99998853 5789999999999999999999988 8999999
Q ss_pred CCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccccccccc
Q 006947 119 CGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTT 198 (624)
Q Consensus 119 ~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a 198 (624)
+..|.||||+|+..|+ .++|++||++|+|++.+|..|+||||+|+. .+..+++++|+++|++++ .
T Consensus 67 -d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~-------~ 131 (239)
T 1ycs_B 67 -NDEGITALHNAVCAGH---TEIVKFLVQFGVNVNAADSDGWTPLHCAAS----CNNVQVCKFLVESGAAVF-------A 131 (239)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTT-------C
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc-------e
Confidence 9999999999999999 999999999999999999999999999998 455678999999999998 5
Q ss_pred ccCCCC-Chhhhh--hhcCC
Q 006947 199 TSNSNS-PPLSPA--LENGS 215 (624)
Q Consensus 199 ~~~~g~-TpL~lA--~e~Gs 215 (624)
.+..+. |||++| +.+|.
T Consensus 132 ~~~~~~~t~l~~a~~~~~g~ 151 (239)
T 1ycs_B 132 MTYSDMQTAADKCEEMEEGY 151 (239)
T ss_dssp CCSSSCCCHHHHCCSSSTTC
T ss_pred ecCCCCcchHHHHHHhhhcc
Confidence 555555 999988 55553
No 73
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.87 E-value=2.9e-22 Score=191.33 Aligned_cols=133 Identities=22% Similarity=0.245 Sum_probs=120.8
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
..+++..+..|.||||.|+..|+.++++.|++ .|++++.. |..|.||||+|+..|+.+++++|+++
T Consensus 58 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (192)
T 2rfm_A 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTK-------------DFSGKTPLMWSIIFGYSEMSYFLLEH 123 (192)
T ss_dssp HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred ccccccccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 34677888999999999999999999999999 78998876 68999999999999999999999998
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCC
Q 006947 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATD 186 (624)
Q Consensus 111 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~g 186 (624)
|++++.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+..|+ .+++++|++.+
T Consensus 124 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~~ 190 (192)
T 2rfm_A 124 -GANVNDR-NLEGETPLIVASKYGR---SEIVKKLLELGADISARDLTGLTAEASARIFGR----QEVIKIFTEVR 190 (192)
T ss_dssp -TCCSSCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC----HHHHHHHHHHH
T ss_pred -CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCc----HHHHHHHHhcc
Confidence 9999999 9999999999999999 999999999999999999999999999999544 55666666543
No 74
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.87 E-value=6.8e-22 Score=205.05 Aligned_cols=169 Identities=23% Similarity=0.250 Sum_probs=140.7
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
..+++..+..|.||||.|+..|+.++++.|++ .|++++... .........+..|.||||+||..|+.++|++||++
T Consensus 115 ~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~-~ga~~~~~~---~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~ 190 (337)
T 4g8k_A 115 GADVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRR---KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 190 (337)
T ss_dssp TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCC---CCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred cchhhhhccCCCCHHHHHHHcCcHHHHHHHHH-cCCCcchhh---ccccccccccCCCCcHHHHHHHCCCHHHHHHHHhc
Confidence 45678889999999999999999999999999 999988653 22233445678899999999999999999999987
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCCh-HHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHC-CCC
Q 006947 111 SGADVNLSCGNDKSTALHCAASGGALNA-VDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLAT-DGS 188 (624)
Q Consensus 111 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~-~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~-gad 188 (624)
.|+++|.+ +..|.|+||+++..+.... .+++++|+++|+|+|.+|..|+||||+|+.. +..++++.|++. +++
T Consensus 191 ~gad~n~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~----~~~~~v~~Ll~~~~~~ 265 (337)
T 4g8k_A 191 MGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK----KHLGLVQRLLEQEHIE 265 (337)
T ss_dssp SCCCTTCC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHT----TCHHHHHHHHTSTTCC
T ss_pred cCCCcCcc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh----hhhHHHHHHHHhcCCc
Confidence 79999999 9999999998876554322 4688999999999999999999999999994 445567777764 778
Q ss_pred CcccccccccccCCCCChhhhhhhcCC
Q 006947 189 VERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 189 v~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
++ ..+..|.||||+|++.|.
T Consensus 266 vn-------~~d~~G~TpL~~A~~~g~ 285 (337)
T 4g8k_A 266 IN-------DTDSDGKTALLLAVELKL 285 (337)
T ss_dssp TT-------CBCTTSCBHHHHHHHTTC
T ss_pred cc-------CcCCCCCCHHHHHHHcCC
Confidence 87 778899999999999984
No 75
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.87 E-value=1.2e-22 Score=204.59 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=132.0
Q ss_pred cccCccChHHHHHHHHcCCHHHHHHHHh---cCCCCCcccccccccccCCccccCCCCchHHHHHhc---CCHHHHHHHH
Q 006947 35 TVETDDAFASLLELAANNDVEGFKRSIV---CDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATY---GSIDIIRLIL 108 (624)
Q Consensus 35 ni~d~dg~TpLh~AA~~Gdle~Vk~LLe---~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~---G~~eiVklLL 108 (624)
+..+..|.|+||.||..|++++|+.||+ ..+.+++... ...|..|+||||+||.. |+.++|++||
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---------~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll 77 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE---------FKDPETGKTCLLKAMLNLHNGQNDTIALLL 77 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG---------GSCTTTCCCHHHHHHHSCBTTBCHHHHHHH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc---------cccCcCCCCHHHHHHHHHhcCChHHHHHHH
Confidence 4577889999999999999999999987 3566665321 12368999999999987 9999999999
Q ss_pred HhcCCC-------ccc----cCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCC--------------CCCcHH
Q 006947 109 SESGAD-------VNL----SCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDA--------------KGHHPV 163 (624)
Q Consensus 109 ~~~GAD-------VN~----~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~--------------~G~TPL 163 (624)
+. |++ +|. . +..|.||||+|+..|+ .++|++||++|++++.+|. .|.|||
T Consensus 78 ~~-ga~~~~~~~~i~~~~~~~-d~~g~tpL~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL 152 (273)
T 2pnn_A 78 DV-ARKTDSLKQFVNASYTDS-YYKGQTALHIAIERRN---MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPL 152 (273)
T ss_dssp HH-HHHTTCHHHHHTCCCCST-TTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHH
T ss_pred Hh-hccccchhHHhhcccccc-cCCCCCHHHHHHHcCC---HHHHHHHHHCCCCcCccccccccccccccccccCCCCHH
Confidence 98 765 333 3 5689999999999999 9999999999999999997 799999
Q ss_pred HHHhcCCChhhHHHHHHHHHH---CCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 164 DVIVVPPKFQDVRLTLEELLA---TDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 164 hlAa~~g~~~~~~~lLe~LL~---~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
|+|+. .+..+++++|++ .|++++ ..+..|.||||+|++.|.
T Consensus 153 ~~A~~----~g~~~~v~~Ll~~~~~gad~~-------~~d~~g~tpLh~A~~~~~ 196 (273)
T 2pnn_A 153 SLAAC----TNQLAIVKFLLQNSWQPADIS-------ARDSVGNTVLHALVEVAD 196 (273)
T ss_dssp HHHHH----TTCHHHHHHHHHCSSCCCCTT-------CCCTTSCCHHHHHHHHCC
T ss_pred HHHHH----cCCHHHHHHHHhcccCCCCce-------eeCCCCCcHHHHHHHccC
Confidence 99999 456688999999 899998 788899999999999884
No 76
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.87 E-value=8.2e-22 Score=191.67 Aligned_cols=156 Identities=24% Similarity=0.269 Sum_probs=111.9
Q ss_pred CCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 31 MNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 31 ~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
..+++..+..|.|+||.|+..|+.++|+.|++ .|.+++... +..|.||||+|+..|+.++|++|++.
T Consensus 32 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~------------~~~~~t~L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 32 GYDVRQPDKENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLG------------GDLNSTPLHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCB------------TTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH-cCCcchhhc------------CCcCCChhHHHHHcCCHHHHHHHHHc
Confidence 35677788899999999999999999999999 888877653 44577777777777777777777776
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006947 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 111 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
|++++.. +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|+..++ ...++++|++.+++++
T Consensus 99 -g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~~L~~~~~~~~ 170 (240)
T 3eu9_A 99 -GADPSLI-DGEGCSCIHLAAQFGH---TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH---SVDPTRLLLTFNVSVN 170 (240)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC---SSTTHHHHHHTTCCTT
T ss_pred -CCCCccc-CCCCCCHHHHHHHcCH---HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC---hHHHHHHHHhcCCCcc
Confidence 7777776 7777777777777777 777777777777777777777777777775322 1344555666666655
Q ss_pred ccccccccccC-CCCChhhhhhhcC
Q 006947 191 RNLRVSTTTSN-SNSPPLSPALENG 214 (624)
Q Consensus 191 ~~~~l~~a~~~-~g~TpL~lA~e~G 214 (624)
..+. .|.||||+|+..|
T Consensus 171 -------~~~~~~g~t~L~~A~~~~ 188 (240)
T 3eu9_A 171 -------LGDKYHKNTALHWAVLAG 188 (240)
T ss_dssp -------CCCTTTCCCHHHHHHHHT
T ss_pred -------hhhccCCCcHHHHHHHcC
Confidence 2332 4556666555443
No 77
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=1.2e-22 Score=198.58 Aligned_cols=132 Identities=23% Similarity=0.309 Sum_probs=115.4
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcc
Q 006947 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVN 116 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN 116 (624)
.+.+|.|+||.||..|++++|+.||+ .|+++|.. |..|+||||+||..|+.++|++||+..|+++|
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~ 134 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGL-------------DKAGSTALYWACHGGHKDIVEMLFTQPNIELN 134 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC
T ss_pred cccccccccccccccCcHHHHHHHHh-CCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc
Confidence 34567899999999999999999999 89999877 68999999999999999999999987789999
Q ss_pred ccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006947 117 LSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 117 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
.+ +..|.||||+|+..|+ .++|++||++|++++.+|..|+||||+|+. .+..++++.|++.++...
T Consensus 135 ~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~----~~~~~~l~~l~~~~~~~~ 200 (222)
T 3ehr_A 135 QQ-NKLGDTALHAAAWKGY---ADIVQLLLAKGARTDLRNIEKKLAFDMATN----AACASLLKKKQGTDAVRT 200 (222)
T ss_dssp CC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCSCCCCTTSCCHHHHCCS----HHHHHHHC----------
T ss_pred cc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCHHHHhcc----hhHHHHHHHHhccchhhh
Confidence 99 9999999999999999 999999999999999999999999999998 888999999999988776
No 78
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.87 E-value=6.8e-22 Score=194.49 Aligned_cols=162 Identities=20% Similarity=0.110 Sum_probs=134.7
Q ss_pred ccCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHH
Q 006947 29 VDMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLIL 108 (624)
Q Consensus 29 ~d~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL 108 (624)
....+++..+..|.||||.|+..|+.++++.|++ .+.+.+... ..+..+..|.||||+|+..|+.++|++||
T Consensus 66 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~-------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 137 (236)
T 1ikn_D 66 GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ-SCTTPHLHS-------ILKATNYNGHTCLHLASIHGYLGIVELLV 137 (236)
T ss_dssp SCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHH-STTTTSSSC-------GGGCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhHHH-------HhhccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3445788889999999999999999999999999 776643221 12334788999999999999999999999
Q ss_pred HhcCCCccccCCC-CCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCC
Q 006947 109 SESGADVNLSCGN-DKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDG 187 (624)
Q Consensus 109 ~~~GADVN~~~d~-~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~ga 187 (624)
++ |++++.+ +. .|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+. .+..+++++|+++|+
T Consensus 138 ~~-g~~~~~~-~~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~----~~~~~~~~~Ll~~ga 208 (236)
T 1ikn_D 138 SL-GADVNAQ-EPCNGRTALHLAVDLQN---PDLVSLLLKCGADVNRVTYQGYSPYQLTWG----RPSTRIQQQLGQLTL 208 (236)
T ss_dssp HH-TCCTTCC-CTTTCCCHHHHHHHTTC---HHHHHHHHTTTCCSCCCCTTCCCGGGGCTT----SSCHHHHHHHHTTSC
T ss_pred Hc-CCCCCCC-CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcccCCCCCHHHHHHc----cCchHHHHHHHHcch
Confidence 99 9999998 66 99999999999999 999999999999999999999999999998 556788999999998
Q ss_pred CCcccccccccccCCCCChhhhhhh
Q 006947 188 SVERNLRVSTTTSNSNSPPLSPALE 212 (624)
Q Consensus 188 dv~~~~~l~~a~~~~g~TpL~lA~e 212 (624)
+.. ....+..+.|+...+.+
T Consensus 209 ~~~-----~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 209 ENL-----QMLPESEDEESYDTESE 228 (236)
T ss_dssp GGG-----SSCCCCCTTTCCCCC--
T ss_pred hhh-----hcCCccchHHHHhhhcc
Confidence 765 12344555666555443
No 79
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.87 E-value=7e-22 Score=182.18 Aligned_cols=123 Identities=27% Similarity=0.236 Sum_probs=113.4
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcc
Q 006947 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVN 116 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN 116 (624)
.+..|.|+||.|+..|+.++++.|++ .|++++.. |..|.||||+|+..|+.++|++|+++ |++++
T Consensus 30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~ 94 (153)
T 1awc_B 30 TDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDAR-------------TKVDRTPLHMAASEGHANIVEVLLKH-GADVN 94 (153)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcChHHHHHHHHHc-CCCCC
Confidence 47789999999999999999999999 89998876 68899999999999999999999998 99999
Q ss_pred ccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHH
Q 006947 117 LSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEEL 182 (624)
Q Consensus 117 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~L 182 (624)
.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+..|+ .+++++|
T Consensus 95 ~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~i~~~L 152 (153)
T 1awc_B 95 AK-DMLKMTALHWATEHNH---QEVVELLIKYGADVHTQSKFCKTAFDISIDNGN----EDLAEIL 152 (153)
T ss_dssp CC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHH
T ss_pred CC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC----HHHHHHh
Confidence 99 9999999999999999 999999999999999999999999999999554 4455543
No 80
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.87 E-value=6.6e-22 Score=182.03 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=117.1
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006947 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~G 112 (624)
+++..+..|.|+||. |..|+.++++.|++ .|++++.. |..|.||||+|+..|+.++|++|+++ |
T Consensus 28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g 91 (156)
T 1bd8_A 28 HPDALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQ-------------DTSGTSPVHDAARTGFLDTLKVLVEH-G 91 (156)
T ss_dssp CTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred CccccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-C
Confidence 677888999999999 99999999999999 89999887 68999999999999999999999998 9
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHH
Q 006947 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLA 184 (624)
Q Consensus 113 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~ 184 (624)
++++.+ +..|.||||+|+..|+ .++|++|++. ++++.+|..|.||||+|+..|+ .+++++|++
T Consensus 92 ~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~ 154 (156)
T 1bd8_A 92 ADVNVP-DGTGALPIHLAVQEGH---TAVVSFLAAE-SDLHRRDARGLTPLELALQRGA----QDLVDILQG 154 (156)
T ss_dssp CCSCCC-CTTSCCHHHHHHHHTC---HHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCC----HHHHHHHHT
T ss_pred CCCCCc-CCCCCcHHHHHHHhCh---HHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCc----HHHHHHHHh
Confidence 999999 9999999999999999 9999999999 9999999999999999999554 456666654
No 81
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=9e-22 Score=204.32 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=123.5
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhc---CCHHHHHHHHHhcCC
Q 006947 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATY---GSIDIIRLILSESGA 113 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~---G~~eiVklLL~~~GA 113 (624)
......++|+.|+..|+++.|+.||+ .|++++.... ....+..|+||||+||.. |+.++|++||++ |+
T Consensus 147 ~~~~~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~~-------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-ga 217 (301)
T 2b0o_E 147 RCTPEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLP-------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GG 217 (301)
T ss_dssp CCC-CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCEE-------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SS
T ss_pred ccCchHHHHhhhhhccCHHHHHHHHh-cCCcccccCC-------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CC
Confidence 34456788999999999999999998 9999887310 001368899999999997 899999999999 99
Q ss_pred CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccc
Q 006947 114 DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNL 193 (624)
Q Consensus 114 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~ 193 (624)
++|.+ +.+|+||||+|+..|+ .++|++||++|||++.+|..|.||||+|+. .+..+++++|++.|++
T Consensus 218 dvn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~----~~~~~iv~~Ll~~ga~----- 284 (301)
T 2b0o_E 218 HLDAK-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARK----KHHKECEELLEQAQAG----- 284 (301)
T ss_dssp CTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCCSCCCTTSCCHHHHHHH----HTCHHHHHHHHHHHHH-----
T ss_pred CCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCC-----
Confidence 99999 9999999999999999 999999999999999999999999999998 5556788888887754
Q ss_pred cccccccCCCCChhhhhhhcCC
Q 006947 194 RVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 194 ~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
.|.||||+|++.|.
T Consensus 285 --------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 285 --------TFAFPLHVDYSWVI 298 (301)
T ss_dssp --------TTSSCCC-------
T ss_pred --------CCCChhHHHHhcCC
Confidence 46899999999884
No 82
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.86 E-value=4.7e-22 Score=210.95 Aligned_cols=165 Identities=18% Similarity=0.233 Sum_probs=142.2
Q ss_pred CCCcccC-ccChHHHHHHHHcCCHHHHHHHHh-------cCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHH
Q 006947 32 NHLTVET-DDAFASLLELAANNDVEGFKRSIV-------CDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDI 103 (624)
Q Consensus 32 ~~ini~d-~dg~TpLh~AA~~Gdle~Vk~LLe-------~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~ei 103 (624)
.+++..+ ..|.|+||+||..|+.++|+.|+. +.|+++|.. |.+|.||||+|+..|+.++
T Consensus 115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~-------------d~~g~TpL~~A~~~g~~~i 181 (373)
T 2fo1_E 115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-------------DCDENTPLMLAVLARRRRL 181 (373)
T ss_dssp TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-------------CTTSCCHHHHHHHHTCHHH
T ss_pred ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC-------------CCCCCCHHHHHHHcChHHH
Confidence 4677777 789999999999999998888873 388888876 6899999999999999999
Q ss_pred HHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCC---CCCCCcCCCCCcHHHHHhcCCChhhHHHHHH
Q 006947 104 IRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAG---ADPNFVDAKGHHPVDVIVVPPKFQDVRLTLE 180 (624)
Q Consensus 104 VklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~G---AD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe 180 (624)
|++||++ |++++.. +..|.||||+|+..|+ .++|++|++.| ++++..|..|.||||+|+..+. ....++++
T Consensus 182 v~~Ll~~-ga~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~-~~~~~~v~ 255 (373)
T 2fo1_E 182 VAYLMKA-GADPTIY-NKSERSALHQAAANRD---FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG-RDQVASAK 255 (373)
T ss_dssp HHHHHHT-TCCSCCC-CTTCCCHHHHHHHTTC---HHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCS-TTHHHHHH
T ss_pred HHHHHHC-CCCCccc-CCCCCCHHHHHHHCCC---HHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCC-cchHHHHH
Confidence 9999999 9999998 9999999999999999 99999999998 8999999999999999998432 12678999
Q ss_pred HHHHCCCCCccc-ccccccccCCCCChhhhhhhcCC
Q 006947 181 ELLATDGSVERN-LRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 181 ~LL~~gadv~~~-~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
+|++.|++++.. .......+..|.||||+|+..|.
T Consensus 256 ~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~ 291 (373)
T 2fo1_E 256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291 (373)
T ss_dssp HHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC
T ss_pred HHHHCCCCcccccccccCcccccCCCHHHHHHHhCC
Confidence 999999998721 11122356789999999998874
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.85 E-value=8.1e-22 Score=190.79 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=116.8
Q ss_pred cccC-ccChHHHHHHHHcCCH----HHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCC------HHH
Q 006947 35 TVET-DDAFASLLELAANNDV----EGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGS------IDI 103 (624)
Q Consensus 35 ni~d-~dg~TpLh~AA~~Gdl----e~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~------~ei 103 (624)
+..+ ..|.||||.|+..|+. ++++.||+ .|+++|.. |.+|+||||+|+..|+ .++
T Consensus 31 ~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~-------------d~~g~TpLh~a~~~~~~~~~~~~~i 96 (186)
T 3t8k_A 31 EDKESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSR-------------TKEGTTLFFPLFQGGGNDITGTTEL 96 (186)
T ss_dssp SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCC-------------CTTCCCTHHHHHHHCTTCHHHHHHH
T ss_pred ccccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCcchhhHHHH
Confidence 3444 7799999999999986 48999998 99999987 6899999999999997 688
Q ss_pred HHHHHHhcCCCccccCCCCCC-hHHHHHHhCCCC--ChHHHHHHHHH-CCCCCCCcCCCCCcHHHHHhcCCChhhHHHHH
Q 006947 104 IRLILSESGADVNLSCGNDKS-TALHCAASGGAL--NAVDVVKLLLA-AGADPNFVDAKGHHPVDVIVVPPKFQDVRLTL 179 (624)
Q Consensus 104 VklLL~~~GADVN~~~d~~G~-TPLH~Aa~~G~~--~~~eiVklLL~-~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lL 179 (624)
|++||++ |+|||.+ |..|. ||||+|+..+.. +..+++++||+ +|+|++.+|..|+||||+|+..|+...++.+.
T Consensus 97 v~~Ll~~-Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~ 174 (186)
T 3t8k_A 97 CKIFLEK-GADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174 (186)
T ss_dssp HHHHHHT-TCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHC-CCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999 9999999 99999 999999996541 12579999999 99999999999999999999977776666666
Q ss_pred HHHHHCC
Q 006947 180 EELLATD 186 (624)
Q Consensus 180 e~LL~~g 186 (624)
+++.+.+
T Consensus 175 ~~~~~~~ 181 (186)
T 3t8k_A 175 DYIKKYN 181 (186)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6655444
No 84
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.85 E-value=1.1e-21 Score=195.52 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=129.7
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHh---cCCCCCcccccccccccCCccccCCCCchHHHHH---hcCCHHHHHHHHHhcC
Q 006947 39 DDAFASLLELAANNDVEGFKRSIV---CDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAA---TYGSIDIIRLILSESG 112 (624)
Q Consensus 39 ~dg~TpLh~AA~~Gdle~Vk~LLe---~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA---~~G~~eiVklLL~~~G 112 (624)
.-+.++||.||..|+.+.|+.||+ +.+++++..+ ...|.+|.||||+|+ ..|+.++|++||+. |
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~---------~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g 72 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE---------FREPSTGKTCLPKALLNLSAGRNDTIPILLDI-A 72 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG---------GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH-H
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh---------hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh-c
Confidence 457899999999999997666665 4788888663 122477999999999 77999999999998 6
Q ss_pred CC-----------ccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcC--------------CCCCcHHHHHh
Q 006947 113 AD-----------VNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVD--------------AKGHHPVDVIV 167 (624)
Q Consensus 113 AD-----------VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D--------------~~G~TPLhlAa 167 (624)
++ ++.. +..|+||||+|+..|+ .++|++||++|++++.+| ..|+||||+|+
T Consensus 73 ~~~~~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~ 148 (260)
T 3jxi_A 73 EKTGNMREFINSPFRDV-YYRGQTALHIAIERRC---KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA 148 (260)
T ss_dssp HHTTCHHHHHTCCBCCS-SEESBCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHH
T ss_pred ccccchHhhhccccccc-ccCCCCHHHHHHHcCC---HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHH
Confidence 54 3333 4589999999999999 999999999999999999 68999999999
Q ss_pred cCCChhhHHHHHHHHHH---CCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 168 VPPKFQDVRLTLEELLA---TDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 168 ~~g~~~~~~~lLe~LL~---~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
. .+..+++++|++ .|++++ ..+..|.||||+|+..|.
T Consensus 149 ~----~g~~~~v~~Ll~~~~~ga~~~-------~~d~~g~TpLh~A~~~~~ 188 (260)
T 3jxi_A 149 C----TNQPHIVHYLTENGHKQADLR-------RQDSRGNTVLHALVAIAD 188 (260)
T ss_dssp H----TTCHHHHHHHHHCSSCCCCTT-------CCCTTSCCHHHHHHHHCC
T ss_pred H----cCCHHHHHHHHhccccCCCCc-------ccCCCCCcHHHHHHHhcc
Confidence 9 455789999999 899998 788899999999998774
No 85
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=5e-21 Score=182.43 Aligned_cols=112 Identities=27% Similarity=0.302 Sum_probs=105.8
Q ss_pred CccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccc
Q 006947 38 TDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNL 117 (624)
Q Consensus 38 d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~ 117 (624)
+.+|.|+||.||..|+.++++.||+ |+++|.. |..|+||||+|+..|+.++|++||++ |+++|.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-------------d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~ 104 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-------------DENGRTALLFVAGLGSDKCVRLLAEA-GADLDH 104 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCc
Confidence 5689999999999999999999998 8888876 68999999999999999999999998 999999
Q ss_pred cCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhc
Q 006947 118 SCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVV 168 (624)
Q Consensus 118 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~ 168 (624)
+.+..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+.
T Consensus 105 ~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 105 RDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELARE 152 (183)
T ss_dssp CCSSSSCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHhcCc---HHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence 833899999999999999 999999999999999999999999999986
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.84 E-value=7.6e-21 Score=172.32 Aligned_cols=117 Identities=25% Similarity=0.312 Sum_probs=109.3
Q ss_pred ccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCC-CC
Q 006947 82 KQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAK-GH 160 (624)
Q Consensus 82 ~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~-G~ 160 (624)
+..|..|.||||+|+..|+.++|++||++ |+++|.+ +..|.||||+|+. |+ .++|++|+++|++++.+|.. |+
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~---~~~v~~Ll~~g~~~~~~~~~~g~ 79 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GS---AQVAELLLLHGAEPNCADPATLT 79 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SC---HHHHHHHHHHTCCSSCCBTTTTB
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CC---HHHHHHHHHCCCCCCCcCCCCCC
Confidence 34478999999999999999999999999 9999999 9999999999999 99 99999999999999999999 99
Q ss_pred cHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 161 HPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 161 TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
||||+|+. .+..+++++|++.|++++ ..+..|.|||++|++.|.
T Consensus 80 t~L~~A~~----~~~~~~v~~Ll~~ga~~~-------~~d~~g~tpl~~A~~~~~ 123 (136)
T 1d9s_A 80 RPVHDAAR----EGFLDTLVVLHRAGARLD-------VCDAWGRLPVDLAEEQGH 123 (136)
T ss_dssp CHHHHHHH----HTCHHHHHHHHHTCCCCC-------CCSSSSSCHHHHHHHHTC
T ss_pred CHHHHHHH----cCCHHHHHHHHHcCCCCC-------ccCCCCCCHHHHHHHcCC
Confidence 99999998 566789999999999988 778899999999999884
No 87
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.83 E-value=1.2e-20 Score=170.81 Aligned_cols=115 Identities=23% Similarity=0.236 Sum_probs=107.9
Q ss_pred ccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHH
Q 006947 84 MVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPV 163 (624)
Q Consensus 84 ~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPL 163 (624)
.|.+|+||||+||..|+.++|++||+. |++++.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|+|||
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L 80 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGH---LKVVELLLQHKALVNTTGYQNDSPL 80 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCcccCcCCCCCCHH
Confidence 478999999999999999999999998 9999998 9999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006947 164 DVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 164 hlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
|+|+. .+..+++++|++.|++++ ..+..|.|||++|+..+
T Consensus 81 ~~A~~----~~~~~~v~~Ll~~ga~~~-------~~~~~g~tpl~~A~~~~ 120 (137)
T 3c5r_A 81 HDAAK----NGHVDIVKLLLSYGASRN-------AVNIFGLRPVDYTDDES 120 (137)
T ss_dssp HHHHH----TTCHHHHHHHHHTTCCTT-------CCCTTSCCGGGGCCCHH
T ss_pred HHHHH----cCCHHHHHHHHHcCCCCC-------CCCCCCCCHHHHHhhcc
Confidence 99999 455678999999999998 78889999999998776
No 88
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.83 E-value=1.4e-20 Score=188.41 Aligned_cols=132 Identities=24% Similarity=0.229 Sum_probs=116.7
Q ss_pred CccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccc
Q 006947 38 TDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNL 117 (624)
Q Consensus 38 d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~ 117 (624)
+.+|.|+||.||..|+.++|+.||+ |+++|.. |..|+||||+||..|+.++|++||++ |+++|.
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~ 105 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-------------DENGRTALLFVAGLGSDKCVRLLAEA-GADLDH 105 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-------------CTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-------------CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCc
Confidence 4679999999999999999999998 8888877 68999999999999999999999999 999999
Q ss_pred cCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCC------------hhhHHHHHHHHHHC
Q 006947 118 SCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPK------------FQDVRLTLEELLAT 185 (624)
Q Consensus 118 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~------------~~~~~~lLe~LL~~ 185 (624)
+.+..|+||||+|+..|+ .++|++||++|++++.+|..|+||||+|+..++ ..+..+++++|++.
T Consensus 106 ~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 106 RDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp CCSSSCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 833889999999999999 999999999999999999999999999984211 24567788888776
Q ss_pred CCC
Q 006947 186 DGS 188 (624)
Q Consensus 186 gad 188 (624)
+.+
T Consensus 183 ~~~ 185 (244)
T 3ui2_A 183 VFE 185 (244)
T ss_dssp HEE
T ss_pred ccc
Confidence 543
No 89
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=192.66 Aligned_cols=132 Identities=23% Similarity=0.335 Sum_probs=120.5
Q ss_pred CCCcccCccChHHHHHHH-----HcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHH
Q 006947 32 NHLTVETDDAFASLLELA-----ANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRL 106 (624)
Q Consensus 32 ~~ini~d~dg~TpLh~AA-----~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVkl 106 (624)
.+++..+..|.||||.|+ ..++.++++.|++ .|.+++.. +..|+||||+||..|+.++|++
T Consensus 136 ~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~tpLh~A~~~g~~~~v~~ 201 (276)
T 4hbd_A 136 CKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFR-LGNINAKA-------------SQAGQTALMLAVSHGRVDVVKA 201 (276)
T ss_dssp CCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHH-HSCTTCCC-------------TTTCCCHHHHHHHTTCHHHHHH
T ss_pred CcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHH-cCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHH
Confidence 478889999999999999 7799999999999 77776665 6889999999999999999999
Q ss_pred HHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHH-CCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHC
Q 006947 107 ILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLA-AGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLAT 185 (624)
Q Consensus 107 LL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~-~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~ 185 (624)
||+. |+|+|.+ |.+|+||||+|+..|+ .++|++||+ .|+|++.+|..|+||||+|+. .+..+++++|+++
T Consensus 202 Ll~~-gad~n~~-d~~G~TpLh~A~~~g~---~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 202 LLAC-EADVNVQ-DDDGSTALMCACEHGH---KEIAGLLLAVPSCDISLTDRDGSTALMVALD----AGQSEIASMLYSR 272 (276)
T ss_dssp HHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHH
T ss_pred HHhC-CCCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH----cCCHHHHHHHHhc
Confidence 9999 9999999 9999999999999999 999999999 899999999999999999999 5566777777765
Q ss_pred C
Q 006947 186 D 186 (624)
Q Consensus 186 g 186 (624)
.
T Consensus 273 ~ 273 (276)
T 4hbd_A 273 M 273 (276)
T ss_dssp C
T ss_pred c
Confidence 4
No 90
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=3.9e-20 Score=204.36 Aligned_cols=137 Identities=19% Similarity=0.193 Sum_probs=119.3
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHh---cCCHHHHHHHHHhcCC
Q 006947 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAAT---YGSIDIIRLILSESGA 113 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~---~G~~eiVklLL~~~GA 113 (624)
+.....+.||.|+..|+++.|+.||+ .|+++|.... ....|..|.||||+||. .|+.++|++||++ |+
T Consensus 128 ~~~~~~~~L~~A~~~g~~~~v~~ll~-~g~~~n~~~~-------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga 198 (497)
T 3lvq_E 128 RCTPEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLP-------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GG 198 (497)
T ss_dssp CCC-CHHHHHHHHHHTCHHHHHHHHH-TTCCSSSCBC-------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SC
T ss_pred cccccHHHHHHHHhccCHHHHHHHHh-hcccccCCCC-------CcccccccchHHHHHHHhcccccHHHHHHHHHc-CC
Confidence 33445588999999999999999999 8999987621 12236789999999965 9999999999998 99
Q ss_pred CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006947 114 DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 114 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
|+|.+ |.+|+||||+|+..|+ .++|++||++|||++.+|..|+||||+|+. .+..+++++|+++|++++
T Consensus 199 ~vn~~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~----~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 199 HLDAK-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARK----KHHKECEELLEQAQAGTF 267 (497)
T ss_dssp CTTCC-CSSSCCHHHHHTTTTC---HHHHHHHHHTCCCCSCCCTTCCCHHHHHHH----TTCHHHHHHHHHTCC---
T ss_pred CCCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHhCCCCC
Confidence 99999 9999999999999999 999999999999999999999999999998 556778999999999987
No 91
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=6.1e-20 Score=188.28 Aligned_cols=136 Identities=21% Similarity=0.239 Sum_probs=119.7
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhc---CCHHHHHHHHHhcCC
Q 006947 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATY---GSIDIIRLILSESGA 113 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~---G~~eiVklLL~~~GA 113 (624)
.+....++|+.|+..||++.++.+++ .|.+++... ..+..|..|+||||+||.. |+.++|++||++ |+
T Consensus 126 ~~~~~l~~l~~a~~~~d~~~~~~ll~-~g~~~~~~~-------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga 196 (278)
T 1dcq_A 126 DTAAKLHSLCEAVKTRDIFGLLQAYA-DGVDLTEKI-------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SG 196 (278)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHH-TTCCTTSBC-------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CS
T ss_pred ccchhhhhhhhHhhhcccHHHHHHHH-hhcchhhhc-------cccccccCCCCcchHHHHhcccchHHHHHHHHHC-CC
Confidence 34456789999999999999999999 888877542 1223368899999999999 999999999999 99
Q ss_pred CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCC
Q 006947 114 DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSV 189 (624)
Q Consensus 114 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv 189 (624)
++|.+ |..|+||||+|+..|+ .++|++||++|||++.+|..|+||||+|+.. +..+++++|++.|++.
T Consensus 197 ~in~~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~----~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 197 NLDKQ-TGKGSTALHYCCLTDN---AECLKLLLRGKASIEIANESGETPLDIAKRL----KHEHCEELLTQALSGR 264 (278)
T ss_dssp CTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHTTC
T ss_pred Ccccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCccCCCCCHHHHHHHc----CCHHHHHHHHHcCCCC
Confidence 99999 9999999999999999 9999999999999999999999999999994 4567888888887754
No 92
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=3.8e-20 Score=198.14 Aligned_cols=156 Identities=18% Similarity=0.185 Sum_probs=115.9
Q ss_pred CcccCccChHHHHHHHHc-CCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006947 34 LTVETDDAFASLLELAAN-NDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~-Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~G 112 (624)
.++....+.|+||.|+.. |++++|+.||+ .|+++|..+ .+.+|.||||+||..|+.++|++||++ |
T Consensus 192 ~~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~-----------~~~~g~TpLh~Aa~~g~~~iv~~LL~~-G 258 (368)
T 3jue_A 192 EDLGSLHPGALLFRASGHPPSLPTMADALA-HGADVNWVN-----------GGQDNATPLIQATAANSLLACEFLLQN-G 258 (368)
T ss_dssp -----CCHHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCC-----------TTTTCCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred cccccCCCCcHHHHHHHccCCHHHHHHHHH-cCCCCCccc-----------cccCCCCHHHHHHHCCCHHHHHHHHHc-C
Confidence 445556778999999999 99999999999 999999762 127899999999999999999999999 9
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccc
Q 006947 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERN 192 (624)
Q Consensus 113 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~ 192 (624)
+++|.+ +..|+||||+|+..|+ .++|++||++|+|++.+|..|.||||+|+..+ ..+++++|+..+....
T Consensus 259 advn~~-d~~G~TpLh~A~~~g~---~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g----~~~iv~lLl~~~~~~~-- 328 (368)
T 3jue_A 259 ANVNQA-DSAGRGPLHHATILGH---TGLACLFLKRGADLGARDSEGRDPLTIAMETA----NADIVTLLRLAKMREA-- 328 (368)
T ss_dssp CCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT----CHHHHHHHHHHHC-----
T ss_pred CCCCCC-CCCCCCHHHHHHHcCc---HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCC----CHHHHHHHHHcCCCcc--
Confidence 999999 9999999999999999 99999999999999999999999999999954 4556676766553322
Q ss_pred ccccccccCCCCChhhhhhhcC
Q 006947 193 LRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 193 ~~l~~a~~~~g~TpL~lA~e~G 214 (624)
........+.|++.++....
T Consensus 329 --~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 329 --EAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp ----------------------
T ss_pred --cccccCCCCCCHHHHHHHHH
Confidence 01123445667777665544
No 93
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.81 E-value=1.3e-20 Score=192.57 Aligned_cols=145 Identities=16% Similarity=0.092 Sum_probs=125.4
Q ss_pred ccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCcccc
Q 006947 39 DDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLS 118 (624)
Q Consensus 39 ~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~ 118 (624)
.+|.||||.||..|+.++|+.||+ .|++++.. |..|.||||+|+..|+.++|++||++ |++++..
T Consensus 60 ~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~ 124 (285)
T 3kea_A 60 LENEFPLHQAATLEDTKIVKILLF-SGLDDSQF-------------DDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFY 124 (285)
T ss_dssp CTTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCcc
Confidence 358999999999999999999999 89999877 68899999999999999999999999 9999998
Q ss_pred CCCCC-ChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccc
Q 006947 119 CGNDK-STALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVST 197 (624)
Q Consensus 119 ~d~~G-~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~ 197 (624)
+..| .||||+|+..|+ .++|++|+++|+++... ..|.||||+|+.. +..+++++|+++|++++
T Consensus 125 -~~~g~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~----g~~~~v~~Ll~~gad~n------- 188 (285)
T 3kea_A 125 -GKTGWKTSFYHAVMLND---VSIVSYFLSEIPSTFDL-AILLSCIHITIKN----GHVDMMILLLDYMTSTN------- 188 (285)
T ss_dssp -SSSGGGSHHHHHHHTTC---HHHHHHHHTTSCTTCCC-STHHHHHHHHHHT----TCHHHHHHHHHHHHHTC-------
T ss_pred -CCCCCCCHHHHHHHcCC---HHHHHHHHhCCCccccc-cCCccHHHHHHHc----ChHHHHHHHHHcCCCCC-------
Confidence 8888 799999999999 99999999999887332 2899999999984 45667888888888887
Q ss_pred cccCCCCCh-hhhhhhcC
Q 006947 198 TTSNSNSPP-LSPALENG 214 (624)
Q Consensus 198 a~~~~g~Tp-L~lA~e~G 214 (624)
..+..|.|| |++|++.|
T Consensus 189 ~~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 189 TNNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp TTCCCBCCTTHHHHHHHT
T ss_pred cccCCCCChHHHHHHHcC
Confidence 667778786 88887665
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.81 E-value=6e-20 Score=163.27 Aligned_cols=113 Identities=21% Similarity=0.255 Sum_probs=103.3
Q ss_pred cCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHH
Q 006947 85 VNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVD 164 (624)
Q Consensus 85 D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLh 164 (624)
+..|.||||+|+..|+.++|++||+. |+++|.+ +..|+||||+|+..|+ .++|++|++.|++++.+|..|+||||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~tpL~ 78 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLKGADINAPDKHHITPLL 78 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 46788999999999999999999998 8999998 9999999999999999 99999999999999999999999999
Q ss_pred HHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhc
Q 006947 165 VIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALEN 213 (624)
Q Consensus 165 lAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~ 213 (624)
+|+. .+..+++++|++.|++++ ..+..|.|||++|...
T Consensus 79 ~A~~----~~~~~~v~~Ll~~ga~~~-------~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 79 SAVY----EGHVSCVKLLLSKGADKT-------VKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HHHH----HTCHHHHHHHHHTTCCTT-------CCCTTSCCHHHHCCCH
T ss_pred HHHH----cCCHHHHHHHHHcCCCCC-------CcCCCCCCHHHHhCCH
Confidence 9998 556789999999999988 7888999999998543
No 95
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.81 E-value=6.9e-20 Score=165.97 Aligned_cols=115 Identities=29% Similarity=0.385 Sum_probs=107.4
Q ss_pred cCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHH
Q 006947 85 VNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVD 164 (624)
Q Consensus 85 D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLh 164 (624)
...|.||||+||..|+.++|++||++ |+++|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGH---LEIVEVLLKNGADVNAVDAIGFTPLH 85 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 46788999999999999999999999 9999999 9999999999999999 99999999999999999999999999
Q ss_pred HHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 165 VIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 165 lAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
+|+. .+..+++++|++.|++++ ..+..|.|||++|+..|.
T Consensus 86 ~A~~----~~~~~~v~~Ll~~g~~~~-------~~~~~g~tpl~~A~~~~~ 125 (136)
T 2jab_A 86 LAAF----IGHLEIAEVLLKHGADVN-------AQDKFGKTAFDISIGNGN 125 (136)
T ss_dssp HHHH----HTCHHHHHHHHHTTCCTT-------CCCTTSCCHHHHHHHTTC
T ss_pred HHHH----cCCHHHHHHHHHcCCCCc-------CcCCCCCCHHHHHHHCCC
Confidence 9998 556788999999999988 778899999999999884
No 96
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=4.5e-20 Score=161.93 Aligned_cols=109 Identities=33% Similarity=0.424 Sum_probs=100.0
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCc
Q 006947 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADV 115 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADV 115 (624)
.+|.+|.|+||.||..|+.++++.||+ .|++++.. |..|.||||+|+..|+.++|++||++ |+++
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~ 68 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNAR-------------SKDGNTPLHLAAKNGHAEIVKLLLAK-GADV 68 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCC-------------CSSSCCTTHHHHTTTCHHHHHHHTTT-TCCT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCC
Confidence 578899999999999999999999999 88888876 68999999999999999999999988 9999
Q ss_pred cccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHH
Q 006947 116 NLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPV 163 (624)
Q Consensus 116 N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPL 163 (624)
+.+ +..|.||||+|+..|+ .+++++|+++|+|+|.++..|.+|-
T Consensus 69 ~~~-d~~g~tpl~~A~~~~~---~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 69 NAR-SKDGNTPEHLAKKNGH---HEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TCC-CTTCCCTTHHHHTTTC---HHHHHHHHTTSSSHHHHSCCCC---
T ss_pred ccc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCccccccc
Confidence 998 8999999999999999 9999999999999999999998874
No 97
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=1.6e-19 Score=153.12 Aligned_cols=93 Identities=39% Similarity=0.577 Sum_probs=86.2
Q ss_pred CCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 006947 87 EQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVI 166 (624)
Q Consensus 87 ~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlA 166 (624)
+|+||||+|+..|+.++|++||+. |+++|.+ +..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A 75 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA 75 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 489999999999999999999998 9999999 9999999999999999 9999999999999999999999999999
Q ss_pred hcCCChhhHHHHHHHHHHCCCC
Q 006947 167 VVPPKFQDVRLTLEELLATDGS 188 (624)
Q Consensus 167 a~~g~~~~~~~lLe~LL~~gad 188 (624)
+. .+..+++++|++.|++
T Consensus 76 ~~----~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 76 AR----NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HH----TTCHHHHHHHHHTTCC
T ss_pred HH----cCCHHHHHHHHHcCCC
Confidence 98 4567788999998874
No 98
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=180.15 Aligned_cols=131 Identities=18% Similarity=0.284 Sum_probs=109.1
Q ss_pred HHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCC
Q 006947 57 FKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGAL 136 (624)
Q Consensus 57 Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~ 136 (624)
|+.||+ .|++++... ..+.+|.||||+||..|+.++|++||+. |+++|.+ +..|+||||+|+..|+
T Consensus 1 v~~ll~-~~~~~~~~~----------~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~- 66 (229)
T 2vge_A 1 MRSVLR-KAGSPRKAR----------RARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGAN- 66 (229)
T ss_dssp ----------CCCCCC----------CTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTC-
T ss_pred Ceehhc-cCCCCcccc----------ccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCC-
Confidence 466777 777777653 3467788999999999999999999998 9999998 9999999999999999
Q ss_pred ChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCccccccccccc-CCCCChhhhh--hhc
Q 006947 137 NAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTS-NSNSPPLSPA--LEN 213 (624)
Q Consensus 137 ~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~-~~g~TpL~lA--~e~ 213 (624)
.++|++||+.|+|++.+|..|+||||+|+. .+..+++++|++.|++++ ..+ ..|.|||++| +..
T Consensus 67 --~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~ga~~~-------~~~~~~g~tpL~~A~a~~~ 133 (229)
T 2vge_A 67 --YSIVDFLITAGANVNSPDSHGWTPLHCAAS----CNDTVICMALVQHGAAIF-------ATTLSDGATAFEKCDPYRE 133 (229)
T ss_dssp --HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCTT-------CCCSSTTCCTGGGCCTTST
T ss_pred --HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCcc-------cccCCCCCCHHHHHHHHhc
Confidence 999999999999999999999999999999 455778999999999988 444 5899999998 666
Q ss_pred C
Q 006947 214 G 214 (624)
Q Consensus 214 G 214 (624)
|
T Consensus 134 ~ 134 (229)
T 2vge_A 134 G 134 (229)
T ss_dssp T
T ss_pred C
Confidence 5
No 99
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=2.4e-19 Score=152.13 Aligned_cols=93 Identities=38% Similarity=0.507 Sum_probs=87.7
Q ss_pred cChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccC
Q 006947 40 DAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSC 119 (624)
Q Consensus 40 dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~ 119 (624)
+|.||||.|+..|+.++++.|++ .|+++|.. |.+|+||||+|+..|+.++|++|+++ |++++.+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~-------------d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~- 64 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAK-------------DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK- 64 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH-cCCCCccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-
Confidence 48899999999999999999999 89999987 68999999999999999999999998 9999999
Q ss_pred CCCCChHHHHHHhCCCCChHHHHHHHHHCCCC
Q 006947 120 GNDKSTALHCAASGGALNAVDVVKLLLAAGAD 151 (624)
Q Consensus 120 d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD 151 (624)
+.+|.||||+|+..|+ .+++++|+++||+
T Consensus 65 d~~g~t~l~~A~~~~~---~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 65 DKNGRTPLHLAARNGH---LEVVKLLLEAGAY 93 (93)
T ss_dssp CTTSCCHHHHHHHTTC---HHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHcCCC
Confidence 9999999999999999 9999999999986
No 100
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.80 E-value=1.3e-20 Score=196.45 Aligned_cols=182 Identities=10% Similarity=0.036 Sum_probs=133.0
Q ss_pred CccccCCCCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccc---------------------------------
Q 006947 26 HTNVDMNHLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVG--------------------------------- 72 (624)
Q Consensus 26 ~~~~d~~~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~--------------------------------- 72 (624)
......-+++..+..|.++++ |++++|+.||+ +|++++...
T Consensus 37 ~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~-~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 110 (327)
T 1sw6_A 37 DFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQ-RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQ 110 (327)
T ss_dssp STTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHH-HHHC-------------------------------CHHHHHH
T ss_pred HHhhCCcccccCCCCCCcccC-----chhHHHHHHHH-hccCCccccchHhhhcccccccccccCCccchhHHHHHhhHH
Confidence 344455667888888999877 99999999998 777765521
Q ss_pred ----cccccccCCcc-ccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHH
Q 006947 73 ----LWYGRQKGSKQ-MVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLA 147 (624)
Q Consensus 73 ----l~~~~~~~~~~-~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~ 147 (624)
++...+.+++. .|.+|+||||+||..|+.++|++||++ |+++|.+ +.+|+||||+|+..|+....++++.|++
T Consensus 111 ~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~-d~~g~TpLh~A~~~g~~~~~~~~~~ll~ 188 (327)
T 1sw6_A 111 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLD 188 (327)
T ss_dssp HHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHhcccccHHHHHHHHH
Confidence 23334566777 799999999999999999999999999 9999999 9999999999999876111367788888
Q ss_pred CC-CCCCCcCCCCCcHHHHHhc----CCChhhHHHHHHHHHH----------------CCCCCc-----ccccc------
Q 006947 148 AG-ADPNFVDAKGHHPVDVIVV----PPKFQDVRLTLEELLA----------------TDGSVE-----RNLRV------ 195 (624)
Q Consensus 148 ~G-AD~n~~D~~G~TPLhlAa~----~g~~~~~~~lLe~LL~----------------~gadv~-----~~~~l------ 195 (624)
.+ ++++.+|..|+||||+|+. .|+...++.+++.... .|++++ +.+++
T Consensus 189 ~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~ 268 (327)
T 1sw6_A 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 268 (327)
T ss_dssp HHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSH
T ss_pred hhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHH
Confidence 86 7899999999999999998 5555555555443210 133332 11111
Q ss_pred -------cccccCCCCChhhhhhhcCC
Q 006947 196 -------STTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 196 -------~~a~~~~g~TpL~lA~e~Gs 215 (624)
....+..|.||||+|++.|.
T Consensus 269 ~~Ll~~~~n~~d~~G~TpLh~A~~~g~ 295 (327)
T 1sw6_A 269 KWIIANMLNAQDSNGDTCLNIAARLGN 295 (327)
T ss_dssp HHHHHHTTTCCCTTSCCHHHHHHHHCC
T ss_pred HHHHHhCCCCCCCCCCCHHHHHHHcCC
Confidence 23567789999999998884
No 101
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.79 E-value=4.4e-19 Score=155.77 Aligned_cols=113 Identities=37% Similarity=0.566 Sum_probs=105.7
Q ss_pred CCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Q 006947 87 EQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVI 166 (624)
Q Consensus 87 ~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlA 166 (624)
+|+||||+|+..|+.++|++|+++ |++++.. +..|.||||+|+..|+ .+++++|++.|++++.+|..|.||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A 75 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA 75 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCcHHHHH
Confidence 589999999999999999999998 9999998 9999999999999999 9999999999999999999999999999
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 167 VVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 167 a~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
+. .+..+++++|++.|++++ ..+..|.|||++|+..|.
T Consensus 76 ~~----~~~~~~~~~Ll~~g~~~~-------~~~~~g~t~l~~A~~~~~ 113 (126)
T 1n0r_A 76 AR----NGHLEVVKLLLEAGADVN-------AKDKNGRTPLHLAARNGH 113 (126)
T ss_dssp HH----TTCHHHHHHHHHTTCCTT-------CCCTTSCCHHHHHHHTTC
T ss_pred HH----cChHHHHHHHHHcCCCCc-------ccCCCCCCHHHHHHHcCc
Confidence 98 455678999999999987 678899999999999884
No 102
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.78 E-value=2.2e-19 Score=166.38 Aligned_cols=115 Identities=24% Similarity=0.291 Sum_probs=105.7
Q ss_pred ccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCc-H
Q 006947 84 MVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHH-P 162 (624)
Q Consensus 84 ~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~T-P 162 (624)
.+..|.||||+||..|+.++|++||++ |+++|.. +..|.||||+|+ .|+ .++|++|+++|++++.+|..|+| |
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~---~~~v~~Ll~~g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGS---ARVAELLLLHGAEPNCADPATLTRP 81 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTC---HHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCC---HHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 367899999999999999999999998 9999999 999999999985 888 99999999999999999999999 9
Q ss_pred HHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 163 VDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 163 LhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
||+|+. .+..+++++|+++|++++ ..+..|.|||++|+..|.
T Consensus 82 L~~A~~----~~~~~~v~~Ll~~ga~~~-------~~d~~g~tpl~~A~~~~~ 123 (156)
T 1bi7_B 82 VHDAAR----EGFLDTLVVLHRAGARLD-------VRDAWGRLPVDLAEELGH 123 (156)
T ss_dssp HHHHHH----HTCHHHHHHHHHHTCCSS-------CCCTTCCCHHHHHHHHTC
T ss_pred HHHHHH----CCCHHHHHHHHHcCCCCc-------ccCCCCCCHHHHHHHhCH
Confidence 999998 556788999999999998 778899999999999884
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.77 E-value=4.2e-19 Score=173.44 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=108.7
Q ss_pred cccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHC-CCCCCCcCCCCCc
Q 006947 83 QMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAA-GADPNFVDAKGHH 161 (624)
Q Consensus 83 ~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~-GAD~n~~D~~G~T 161 (624)
..+.+|.||||+||..|+.++|++||+. |+++|.+ +..|+||||+|+..|+ .++|++||+. |++++.+|..|+|
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~g~~~~~~d~~g~t 142 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGL-DKAGSTALYWACHGGH---KDIVEMLFTQPNIELNQQNKLGDT 142 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHTTSTTCCCCCCCTTSCC
T ss_pred ccccccccccccccccCcHHHHHHHHhC-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHcCCCCCccccCCCCCC
Confidence 3567899999999999999999999998 9999998 9999999999999999 9999999999 9999999999999
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcC
Q 006947 162 PVDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 162 PLhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
|||+|+. .+..+++++|++.|++++ ..+..|.|||++|+..|
T Consensus 143 pL~~A~~----~~~~~~v~~Ll~~ga~~~-------~~~~~g~t~l~~A~~~~ 184 (222)
T 3ehr_A 143 ALHAAAW----KGYADIVQLLLAKGARTD-------LRNIEKKLAFDMATNAA 184 (222)
T ss_dssp HHHHHHH----HTCHHHHHHHHHHTCCSC-------CCCTTSCCHHHHCCSHH
T ss_pred HHHHHHH----cCCHHHHHHHHHcCCCCc-------cccCCCCCHHHHhcchh
Confidence 9999998 566789999999999998 78889999999999877
No 104
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.76 E-value=6.5e-19 Score=154.51 Aligned_cols=99 Identities=35% Similarity=0.441 Sum_probs=93.6
Q ss_pred cccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcH
Q 006947 83 QMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHP 162 (624)
Q Consensus 83 ~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TP 162 (624)
..|.+|+||||+||..|+.+++++||++ |++++.+ +..|.||||+|+..|+ .+++++|+++|++++.+|..|+||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~d~~g~tp 78 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNAR-SKDGNTPLHLAAKNGH---AEIVKLLLAKGADVNARSKDGNTP 78 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCC-CSSSCCTTHHHHTTTC---HHHHHHHTTTTCCTTCCCTTCCCT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCCH
Confidence 3588999999999999999999999998 9999998 9999999999999999 999999999999999999999999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006947 163 VDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 163 LhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
||+|+. .+..+++++|+++|++++
T Consensus 79 l~~A~~----~~~~~~~~~Ll~~ga~~n 102 (115)
T 2l6b_A 79 EHLAKK----NGHHEIVKLLDAKGADVN 102 (115)
T ss_dssp THHHHT----TTCHHHHHHHHTTSSSHH
T ss_pred HHHHHH----CCCHHHHHHHHHcCCCCC
Confidence 999999 456788999999999998
No 105
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.76 E-value=3.8e-19 Score=169.38 Aligned_cols=115 Identities=25% Similarity=0.248 Sum_probs=106.5
Q ss_pred ccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcC-CCCCcH
Q 006947 84 MVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVD-AKGHHP 162 (624)
Q Consensus 84 ~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D-~~G~TP 162 (624)
.+.+|.||||+||..|+.++|++||+ |+++|.+ +..|+||||+|+..|+ .++|++|+++|++++.+| ..|+||
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~g~tp 113 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTA 113 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSSCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCCH
Confidence 46789999999999999999999997 8999998 9999999999999999 999999999999999999 899999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 163 VDVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 163 LhlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
||+|+. .+..+++++|+++|++++ ..+..|.|||++|++.+.
T Consensus 114 L~~A~~----~~~~~~v~~Ll~~ga~~~-------~~d~~g~tpl~~A~~~~~ 155 (183)
T 3deo_A 114 LHMAAG----YVRPEVVEALVELGADIE-------VEDERGLTALELAREILK 155 (183)
T ss_dssp HHHHHH----TTCHHHHHHHHHHTCCTT-------CCCTTSCCHHHHHHHHHH
T ss_pred HHHHHh----cCcHHHHHHHHHcCCCCc-------CCCCCCCCHHHHHHHhcc
Confidence 999998 455678899999999988 788999999999999874
No 106
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.73 E-value=3e-18 Score=171.38 Aligned_cols=114 Identities=25% Similarity=0.246 Sum_probs=104.9
Q ss_pred cCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcC-CCCCcHH
Q 006947 85 VNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVD-AKGHHPV 163 (624)
Q Consensus 85 D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D-~~G~TPL 163 (624)
+.+|.||||+||..|+.++|++||+ |+++|.+ +..|+||||+|+..|+ .++|++||++|++++.+| ..|+|||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~t~L 115 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTAL 115 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSCCCHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence 4578999999999999999999997 7999999 9999999999999999 999999999999999999 8899999
Q ss_pred HHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 164 DVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 164 hlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
|+|+. .+..+++++|+++|++++ ..+..|.|||++|++.+.
T Consensus 116 ~~A~~----~g~~~~v~~Ll~~ga~~~-------~~d~~g~t~l~~A~~~~~ 156 (244)
T 3ui2_A 116 HMAAG----YVRPEVVEALVELGADIE-------VEDERGLTALELAREILK 156 (244)
T ss_dssp HHHHH----TTCHHHHHHHHHTTCCTT-------CCCTTCCCHHHHHHHHHT
T ss_pred HHHHH----cCCHHHHHHHHHCCCCCC-------CCCCCCCcHHHHHHHHHh
Confidence 99999 455678999999999998 778899999999987663
No 107
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=177.91 Aligned_cols=110 Identities=21% Similarity=0.094 Sum_probs=97.8
Q ss_pred cCccChHHHHHHHHc---CCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCC
Q 006947 37 ETDDAFASLLELAAN---NDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGA 113 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~---Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GA 113 (624)
.+..|.|+||+||.. |++++|++||+ .|+++|.. |.+|+||||+|+..|+.++|++||+. |+
T Consensus 186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-~gadvn~~-------------d~~G~TpLh~A~~~g~~~~v~~Ll~~-ga 250 (301)
T 2b0o_E 186 AQAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAK-------------AADGNTALHYAALYNQPDCLKLLLKG-RA 250 (301)
T ss_dssp SCSCEECHHHHHHHTCCTTTHHHHHHHHH-HSSCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred cCCCCccHHHHHHHhcccCcHHHHHHHHh-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence 588899999999997 89999999999 79999987 68999999999999999999999998 99
Q ss_pred CccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCC
Q 006947 114 DVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPK 171 (624)
Q Consensus 114 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~ 171 (624)
|++.+ |.+|.||||+|+..|+ .+++++|+++|++ .|.||||+|+..|+
T Consensus 251 d~~~~-d~~G~TpL~~A~~~~~---~~iv~~Ll~~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 251 LVGTV-NEAGETALDIARKKHH---KECEELLEQAQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp CCSCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHHHH------TTSSCCC-------
T ss_pred CCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence 99999 9999999999999999 9999999999987 58999999998654
No 108
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.72 E-value=1.6e-19 Score=193.88 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=111.4
Q ss_pred cCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCC--
Q 006947 37 ETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGAD-- 114 (624)
Q Consensus 37 ~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GAD-- 114 (624)
++.++.|+||.||..|++++|+.||+ .|+..... ...+..|.||||+||..|+.++|++|+++ |+|
T Consensus 88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~-~ga~~~~~----------~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~ 155 (376)
T 2aja_A 88 KGIKSEVICFVAAITGCSSALDTLCL-LLTSDEIV----------KVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEI 155 (376)
T ss_dssp HTCCHHHHHHHHHHHCCHHHHHHHTT-C--CCSSC----------C--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTH
T ss_pred cCCCcCCHHHHHHHcCCHHHHHHHHH-cCCcHHHH----------HHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcc
Confidence 45567799999999999999999999 66622111 01245678999999999999999999999 876
Q ss_pred -ccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCC--cCCCCCcHHHHHh-cCCChhhHHHHHHHHHHCCCCCc
Q 006947 115 -VNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNF--VDAKGHHPVDVIV-VPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 115 -VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~--~D~~G~TPLhlAa-~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
++.. +.+ .||||+||..|+ .++|++|+++|++++. +|..|.||||+|+ .. +..+++++|++.|++
T Consensus 156 ~~~i~-~~~-~TpLh~Aa~~G~---~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~----G~~eiv~~Ll~~ga~-- 224 (376)
T 2aja_A 156 MAMIQ-AEN-YHAFRLAAENGH---LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR----GHHNVINFLLDCPVM-- 224 (376)
T ss_dssp HHHHS-HHH-HHHHHHHHHTTC---HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT----CCHHHHHHHTTSHHH--
T ss_pred ccccC-CCC-CCHHHHHHHCCC---HHHHHHHHHcCCccchhccCCCCCCHHHHHHHHC----CCHHHHHHHHhCCCc--
Confidence 2333 223 999999999999 9999999999999988 8999999999999 94 556677888876532
Q ss_pred ccccccccccCCCCChhhhhhhcC
Q 006947 191 RNLRVSTTTSNSNSPPLSPALENG 214 (624)
Q Consensus 191 ~~~~l~~a~~~~g~TpL~lA~e~G 214 (624)
+.|||++|+++|
T Consensus 225 ------------~~taL~~Aa~~g 236 (376)
T 2aja_A 225 ------------LAYAEIHEFEYG 236 (376)
T ss_dssp ------------HHHHHHCTTTTT
T ss_pred ------------cchHHHHHHHCC
Confidence 445566665555
No 109
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.68 E-value=8.1e-17 Score=141.21 Aligned_cols=93 Identities=35% Similarity=0.441 Sum_probs=81.6
Q ss_pred CccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCC
Q 006947 81 SKQMVNEQRTPLMVAATYGSIDIIRLILSESGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGH 160 (624)
Q Consensus 81 ~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~ 160 (624)
....|.+|.|+||+||..|+.++|++||+. |+++|.+ +..|.||||+|+..|+ .++|++|+++|++++.+|..|+
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~-d~~g~tpLh~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~ 91 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAK-DKNGSTPLHLAARNGH---LEVVKLLLEAGADVXAQDKFGK 91 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSC
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccCCC
Confidence 345688999999999999999999999998 9999999 9999999999999999 9999999999999999999999
Q ss_pred cHHHHHhcCCChhhHHHHHHHH
Q 006947 161 HPVDVIVVPPKFQDVRLTLEEL 182 (624)
Q Consensus 161 TPLhlAa~~g~~~~~~~lLe~L 182 (624)
||||+|+.. +..+++++|
T Consensus 92 tpl~~A~~~----~~~~~~~~L 109 (110)
T 2zgd_A 92 TAFDISIDN----GNEDLAEIL 109 (110)
T ss_dssp CHHHHHHHH----TCHHHHHHH
T ss_pred cHHHHHHHc----CCHHHHHHh
Confidence 999999984 445555544
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.67 E-value=1.2e-16 Score=176.45 Aligned_cols=106 Identities=22% Similarity=0.136 Sum_probs=90.6
Q ss_pred CccChHHHHHHHH---cCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCC
Q 006947 38 TDDAFASLLELAA---NNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGAD 114 (624)
Q Consensus 38 d~dg~TpLh~AA~---~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GAD 114 (624)
+.+|.|+||.||. .|++++|+.||+ .|+++|.. |.+|+||||+||..|+.++|++||++ |||
T Consensus 168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~-~ga~vn~~-------------d~~g~TpLh~A~~~g~~~~v~~Ll~~-ga~ 232 (497)
T 3lvq_E 168 QAPEELVLHLAVKVANQASLPLVDFIIQ-NGGHLDAK-------------AADGNTALHYAALYNQPDCLKLLLKG-RAL 232 (497)
T ss_dssp CCSCBCHHHHHHHTCCTTTHHHHHHHHH-HSCCTTCC-------------CSSSCCHHHHHTTTTCHHHHHHHHHT-CCC
T ss_pred ccccchHHHHHHHhcccccHHHHHHHHH-cCCCCCcc-------------CCCCCcHHHHHHHcCCHHHHHHHHHc-CCC
Confidence 7889999999977 999999999999 89999987 68999999999999999999999999 999
Q ss_pred ccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhc
Q 006947 115 VNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVV 168 (624)
Q Consensus 115 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~ 168 (624)
+|.+ |.+|.||||+|+..|+ .+++++|+++||+++. +|+|.+..
T Consensus 233 ~~~~-d~~g~tpl~~A~~~~~---~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 233 VGTV-NEAGETALDIARKKHH---KECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp CSCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTCC------------------
T ss_pred CCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHhCCCCCC------Ccceeecc
Confidence 9999 9999999999999999 9999999999999987 46666543
No 111
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=3.2e-16 Score=137.41 Aligned_cols=94 Identities=24% Similarity=0.328 Sum_probs=84.1
Q ss_pred CCcccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcC
Q 006947 33 HLTVETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESG 112 (624)
Q Consensus 33 ~ini~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~G 112 (624)
...-.+.+|.|+||.||..|+.++++.||+ .|+++|.. |..|.||||+||..|+.++|++||++ |
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~-------------d~~g~tpLh~A~~~~~~~~v~~Ll~~-g 80 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAK-------------DKNGSTPLHLAARNGHLEVVKLLLEA-G 80 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-C
Confidence 344567789999999999999999999999 89999877 68999999999999999999999999 9
Q ss_pred CCccccCCCCCChHHHHHHhCCCCChHHHHHHH
Q 006947 113 ADVNLSCGNDKSTALHCAASGGALNAVDVVKLL 145 (624)
Q Consensus 113 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklL 145 (624)
++++.+ +..|.||||+|+..|+ .+++++|
T Consensus 81 a~~~~~-d~~g~tpl~~A~~~~~---~~~~~~L 109 (110)
T 2zgd_A 81 ADVXAQ-DKFGKTAFDISIDNGN---EDLAEIL 109 (110)
T ss_dssp CCTTCC-CTTSCCHHHHHHHHTC---HHHHHHH
T ss_pred CCcccc-ccCCCcHHHHHHHcCC---HHHHHHh
Confidence 999999 9999999999999999 9999987
No 112
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.65 E-value=2.5e-16 Score=161.37 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=93.6
Q ss_pred CcccCccChHHHHHHHHc---CCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHh
Q 006947 34 LTVETDDAFASLLELAAN---NDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSE 110 (624)
Q Consensus 34 ini~d~dg~TpLh~AA~~---Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~ 110 (624)
++..+..|.||||.||.. |+.++++.||+ .|+++|.. |.+|+||||+||..|+.++|++||++
T Consensus 162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~-~ga~in~~-------------d~~g~TpLh~A~~~g~~~~v~~Ll~~ 227 (278)
T 1dcq_A 162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQ-------------TGKGSTALHYCCLTDNAECLKLLLRG 227 (278)
T ss_dssp CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccCCCCcchHHHHhcccchHHHHHHHHH-CCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 455678899999999999 89999999999 89999987 68999999999999999999999998
Q ss_pred cCCCccccCCCCCChHHHHHHhCCCCChHHHHHHHHHCCCCC
Q 006947 111 SGADVNLSCGNDKSTALHCAASGGALNAVDVVKLLLAAGADP 152 (624)
Q Consensus 111 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~ 152 (624)
|+|+|.+ |.+|.||||+|+..|+ .++|++|+++|++.
T Consensus 228 -gad~~~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 228 -KASIEIA-NESGETPLDIAKRLKH---EHCEELLTQALSGR 264 (278)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHHTTC
T ss_pred -CCCCCCc-cCCCCCHHHHHHHcCC---HHHHHHHHHcCCCC
Confidence 9999999 9999999999999999 99999999999853
No 113
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.65 E-value=2.4e-16 Score=168.70 Aligned_cols=113 Identities=23% Similarity=0.284 Sum_probs=105.5
Q ss_pred CCCchHHHHHhc-CCHHHHHHHHHhcCCCccccCC--CCCChHHHHHHhCCCCChHHHHHHHHHCCCCCCCcCCCCCcHH
Q 006947 87 EQRTPLMVAATY-GSIDIIRLILSESGADVNLSCG--NDKSTALHCAASGGALNAVDVVKLLLAAGADPNFVDAKGHHPV 163 (624)
Q Consensus 87 ~G~TPLhlAA~~-G~~eiVklLL~~~GADVN~~~d--~~G~TPLH~Aa~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPL 163 (624)
.+.|+||+|+.. |++++|++||++ |+|+|.. + .+|.||||+|+..|+ .++|++||++|+|+|.+|..|+|||
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~-~~~~~g~TpLh~Aa~~g~---~~iv~~LL~~Gadvn~~d~~G~TpL 272 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAH-GADVNWV-NGGQDNATPLIQATAANS---LLACEFLLQNGANVNQADSAGRGPL 272 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCC-CTTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHc-CCCCCcc-ccccCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 456899999999 999999999998 9999998 6 889999999999999 9999999999999999999999999
Q ss_pred HHHhcCCChhhHHHHHHHHHHCCCCCcccccccccccCCCCChhhhhhhcCC
Q 006947 164 DVIVVPPKFQDVRLTLEELLATDGSVERNLRVSTTTSNSNSPPLSPALENGS 215 (624)
Q Consensus 164 hlAa~~g~~~~~~~lLe~LL~~gadv~~~~~l~~a~~~~g~TpL~lA~e~Gs 215 (624)
|+|+. .+..+++++|+++|++++ ..+..|.|||++|+..|.
T Consensus 273 h~A~~----~g~~~~v~~LL~~Gad~~-------~~d~~G~TpL~~A~~~g~ 313 (368)
T 3jue_A 273 HHATI----LGHTGLACLFLKRGADLG-------ARDSEGRDPLTIAMETAN 313 (368)
T ss_dssp HHHHH----HTCHHHHHHHHHTTCCTT-------CCCTTSCCHHHHHHHTTC
T ss_pred HHHHH----cCcHHHHHHHHHCcCCCC-------CcCCCCCCHHHHHHHCCC
Confidence 99998 556789999999999998 788899999999999984
No 114
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.63 E-value=6.2e-18 Score=181.45 Aligned_cols=127 Identities=11% Similarity=0.019 Sum_probs=104.4
Q ss_pred ccCccChHHHHHHHHcCCHHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHHHHHHhcCCCc
Q 006947 36 VETDDAFASLLELAANNDVEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIRLILSESGADV 115 (624)
Q Consensus 36 i~d~dg~TpLh~AA~~Gdle~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVklLL~~~GADV 115 (624)
..+..|.||||.||..|+.++|++|++ .|++++..+. + +.+ .||||+||..|+.++|++||++ |+++
T Consensus 123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~i--------~--~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~ 189 (376)
T 2aja_A 123 VIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMI--------Q--AEN-YHAFRLAAENGHLHVLNRLCEL-APTE 189 (376)
T ss_dssp --CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHH--------S--HHH-HHHHHHHHHTTCHHHHHHHHHS-CGGG
T ss_pred HhccCCCCHHHHHHHcCCHHHHHHHHh-CCCCcccccc--------C--CCC-CCHHHHHHHCCCHHHHHHHHHc-CCcc
Confidence 344578899999999999999999999 8876432210 0 122 8999999999999999999999 9998
Q ss_pred cc--cCCCCCChHHHHHH-hCCCCChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHHHHHCCCCCc
Q 006947 116 NL--SCGNDKSTALHCAA-SGGALNAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEELLATDGSVE 190 (624)
Q Consensus 116 N~--~~d~~G~TPLH~Aa-~~G~~~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~LL~~gadv~ 190 (624)
+. . +..|.||||+|+ ..|+ .++|++|++.|++ |.||||+|+..|+.+ ++++|+++|++++
T Consensus 190 ~~~~~-d~~g~TpL~~Aa~~~G~---~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~e----vv~lL~~~ga~~~ 252 (376)
T 2aja_A 190 ATAMI-QAENYYAFRWAAVGRGH---HNVINFLLDCPVM-------LAYAEIHEFEYGEKY----VNPFIARHVNRLK 252 (376)
T ss_dssp HHHHH-HHHHHHHHHHHHSTTCC---HHHHHHHTTSHHH-------HHHHHHCTTTTTTTT----HHHHHHHHHHHHH
T ss_pred chhcc-CCCCCCHHHHHHHHCCC---HHHHHHHHhCCCc-------cchHHHHHHHCCCHH----HHHHHHhcCcccc
Confidence 87 6 788999999999 9999 9999999998853 899999999965554 6777777776654
No 115
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.39 E-value=6e-14 Score=117.22 Aligned_cols=61 Identities=38% Similarity=0.836 Sum_probs=30.6
Q ss_pred CcccccCCCCC-CCCcCCCCCccccccccceeec---CCCccccccccCC---CCCCCCc-cCCCCCCCC
Q 006947 299 FHYSCVPCPDF-RKGACRRGDMCEYAHGVFECWL---HPAQYRTRLCKDG---TSCARRV-CFFAHTPEE 360 (624)
Q Consensus 299 ~~y~~~~C~~~-~~g~C~~gd~C~~aH~~~E~~~---hP~~ykT~~C~~~---~~C~~~~-C~FaH~~~e 360 (624)
-+||+++|+.| ++|.|++|++|.|+|++.|++. || .|||++|+.| |.|+++. |.|+|..+|
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccc-cccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 47999999999 6899999999999999999985 55 8999999875 8899975 999999877
No 116
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.96 E-value=5e-11 Score=98.04 Aligned_cols=62 Identities=26% Similarity=0.671 Sum_probs=57.5
Q ss_pred cccCCCCCCCCcCCCCC-ccccccccceeecCCCccccccccCC--CCCCCCccCCCCCCCCccC
Q 006947 302 SCVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCARRVCFFAHTPEELRP 363 (624)
Q Consensus 302 ~~~~C~~~~~g~C~~gd-~C~~aH~~~E~~~hP~~ykT~~C~~~--~~C~~~~C~FaH~~~elr~ 363 (624)
+.+.|++|.+|.|.+|| .|.|+|...|.+.++..+|+..|++| |.|.++.|.|+|.+.+|+.
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQA 69 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCHHHHC
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHHHHhc
Confidence 55789999999999999 59999999999999999999999987 9999999999999998874
No 117
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.61 E-value=1.3e-08 Score=84.55 Aligned_cols=62 Identities=27% Similarity=0.582 Sum_probs=21.7
Q ss_pred cccccCC----CccCCCCccCCCCCCCcccccCCCCCCcccccCCCCC-CCCcCCCCCccccccccce
Q 006947 266 FKVRPCS----RAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDF-RKGACRRGDMCEYAHGVFE 328 (624)
Q Consensus 266 fKt~pC~----r~~sh~w~~Cpf~H~~~~~rRr~p~~~~y~~~~C~~~-~~g~C~~gd~C~~aH~~~E 328 (624)
||+..|. .+.|..+..|.|+| +..+.|..++.-.|++.+|+.| ..|.|++|+.|.|+|+..|
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H-~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAH-GLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCS-SSCCGGGTC---------------------------------
T ss_pred ccchhCHHhhhCCCcCCCCCccCCC-CChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 6777776 35688899999999 4445554444457999999988 5899999999999999877
No 118
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.59 E-value=2.6e-08 Score=87.05 Aligned_cols=49 Identities=31% Similarity=0.621 Sum_probs=43.8
Q ss_pred cccccCCCCCCCCcCCCCCccccccccceeecCCCccccccccCC---CCCCCCc-cCCCCCCCC
Q 006947 300 HYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCARRV-CFFAHTPEE 360 (624)
Q Consensus 300 ~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C~~~---~~C~~~~-C~FaH~~~e 360 (624)
.||+.+|+.|.+|.|.+||+|.|+|. +..|+.| |.|.++. |.|+|....
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~------------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG------------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 58999999999999999999999999 6789866 8999975 999998653
No 119
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=4.9e-09 Score=91.67 Aligned_cols=63 Identities=27% Similarity=0.650 Sum_probs=57.4
Q ss_pred ccccCCCCCCCCcCCCCC-ccccccccceeecCCCccccccccCC--CCCCCCccCCCCCCCCccC
Q 006947 301 YSCVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCARRVCFFAHTPEELRP 363 (624)
Q Consensus 301 y~~~~C~~~~~g~C~~gd-~C~~aH~~~E~~~hP~~ykT~~C~~~--~~C~~~~C~FaH~~~elr~ 363 (624)
.+.+.|++|..|.|.+|| .|.|+|...+.+..+...++..|.+| |.|.|+.|.|.|.+.+|+.
T Consensus 18 ~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 18 DKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQA 83 (98)
T ss_dssp SEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred hhhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChHHHHH
Confidence 457789999889999999 79999999998877888999999998 9999999999999988874
No 120
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=8.1e-09 Score=83.74 Aligned_cols=50 Identities=26% Similarity=0.537 Sum_probs=40.6
Q ss_pred cccCCCCCCcccccCCCCCCCCcCCCCCccccccccceeec---CCCccccccccC
Q 006947 291 ARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWL---HPAQYRTRLCKD 343 (624)
Q Consensus 291 ~rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~~---hP~~ykT~~C~~ 343 (624)
|.-|.|.. +| ++|+.|.+|.|+||++|.||||..|++- .+...|+++|+.
T Consensus 11 W~~R~P~~-k~--~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~A 63 (69)
T 2d9m_A 11 WQHRFPTG-YF--SICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKA 63 (69)
T ss_dssp CCCCCCCS-CC--SBCHHHHHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSC
T ss_pred ccccCCCC-Cc--ccCcccCcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 34444442 33 9999998899999999999999999986 577889999874
No 121
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=4e-08 Score=82.09 Aligned_cols=59 Identities=25% Similarity=0.510 Sum_probs=49.4
Q ss_pred CCCcccccCCCCCCCCcCCCCCccccccccceeecCCCccccccccCC---CCCCCCccCCCCCCCCcc
Q 006947 297 RKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCARRVCFFAHTPEELR 362 (624)
Q Consensus 297 ~~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C~~~---~~C~~~~C~FaH~~~elr 362 (624)
..-.+|+++|+.|.+|.|.+||.|.|+|...+ -|+..|+.| |.|....|.|+|...+.+
T Consensus 4 ~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 4 GSSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMPECYFYSKFGECSNKECPFLHIDPESK 65 (77)
T ss_dssp CCSCCTTSBCHHHHTTCCSCTTSSSSBCSCCT-------TTSCBCHHHHHTCCCCCSSCSSBCCCTTSS
T ss_pred CCCCCcceeCHhHccCcCCCCCCCCCcccccc-------CcCCCCcccCCCCccCCCCeeccCCCcccc
Confidence 33478999999998899999999999999764 256789977 999966799999976654
No 122
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.26 E-value=1.1e-07 Score=78.57 Aligned_cols=56 Identities=27% Similarity=0.563 Sum_probs=46.5
Q ss_pred cccccCCCCCCCCcCCCCCccccccccceeecCCCccccccccCC---CCCCCCccCCCCCCCCcc
Q 006947 300 HYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCARRVCFFAHTPEELR 362 (624)
Q Consensus 300 ~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C~~~---~~C~~~~C~FaH~~~elr 362 (624)
.++.++|+.|.+|.|.+||.|.|+|.... -|+..|+.| |.|.+..|.|.|...+.|
T Consensus 13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~y~H~~p~~k 71 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMSECYFYSKFGECSNKECPFLHIDPESK 71 (72)
T ss_dssp CCCCSBCHHHHTTCCCCGGGSSSBCSCCT-------TSCCBCHHHHHHSCCSBTTCCSBCCCCC--
T ss_pred CCcCeeCHHHhcCCCCCCCCCCCcccccc-------ccCCcccccCCCCCCCCCCeeccCCCcccc
Confidence 57889999998899999999999998542 367889974 899997799999876543
No 123
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.08 E-value=7.1e-07 Score=75.59 Aligned_cols=63 Identities=30% Similarity=0.699 Sum_probs=51.2
Q ss_pred cccccCCCCCCCCcCCCCC-ccccccccceeecCCCccccccccCC--CCCCCCccCCCCCCCCccCc
Q 006947 300 HYSCVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCARRVCFFAHTPEELRPL 364 (624)
Q Consensus 300 ~y~~~~C~~~~~g~C~~gd-~C~~aH~~~E~~~hP~~ykT~~C~~~--~~C~~~~C~FaH~~~elr~~ 364 (624)
..+-+.|++|..|.|.+|| .|.|+|.......- .-+...|.+| |.|.++.|.|.|.+.+|..-
T Consensus 6 ~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~--~~~~~vC~dflkG~C~r~~C~y~H~~~~l~~~ 71 (83)
T 3d2n_A 6 WLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPPHLKTQ 71 (83)
T ss_dssp GGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEE--TTEEECCHHHHTTCCCCSSCSSCCCCHHHHHH
T ss_pred cccchhcHHHhcCCCCCCCCCCCCcCCCcccccc--CCceeehhHhhhccccCCCcceeCChHHHHHH
Confidence 5677889999999999998 99999997542211 3456789988 99999999999998887643
No 124
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=2.6e-06 Score=69.06 Aligned_cols=36 Identities=31% Similarity=0.620 Sum_probs=28.7
Q ss_pred eecC-CCccccccccCC--CCCCCCc-cCCCCCCCCccCc
Q 006947 329 CWLH-PAQYRTRLCKDG--TSCARRV-CFFAHTPEELRPL 364 (624)
Q Consensus 329 ~~~h-P~~ykT~~C~~~--~~C~~~~-C~FaH~~~elr~~ 364 (624)
.|.| |.-.|++||+.| |.|+|+. |.|||+++|||..
T Consensus 10 ~W~~R~P~~k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~ 49 (69)
T 2d9m_A 10 CWQHRFPTGYFSICDRYMNGTCPEGNSCKFAHGNAELHEW 49 (69)
T ss_dssp CCCCCCCCSCCSBCHHHHHSCCSSCSSCSSBSSHHHHHHH
T ss_pred cccccCCCCCcccCcccCcCCCCCCCccCCcCCHHHHhhH
Confidence 3443 334588999987 8999985 9999999999974
No 125
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.76 E-value=3.6e-06 Score=72.16 Aligned_cols=62 Identities=31% Similarity=0.717 Sum_probs=50.1
Q ss_pred cccccCCCCCCCCcCCCCC-ccccccccceeecCCCccccccccCC--CCCCCCccCCCCCCCCccC
Q 006947 300 HYSCVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCARRVCFFAHTPEELRP 363 (624)
Q Consensus 300 ~y~~~~C~~~~~g~C~~gd-~C~~aH~~~E~~~hP~~ykT~~C~~~--~~C~~~~C~FaH~~~elr~ 363 (624)
.-+.+.|++|.+|.|.+|| .|.|+|.......- .-+...|.+| |.|.+..|.|.|.+..|..
T Consensus 14 ~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~--~~~~~vC~dflkG~C~r~~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 14 WLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPTHLKT 78 (89)
T ss_dssp SSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCB--TTBEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred cchhhhchHHhcCCCCCCCCCCCCcCCCcccccc--CCceeeehhhhhCcCCCCCcceecCHHHHHH
Confidence 4566789999889999999 99999987643221 3367789988 9999999999999877654
No 126
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.47 E-value=5.5e-05 Score=65.91 Aligned_cols=47 Identities=28% Similarity=0.722 Sum_probs=38.1
Q ss_pred cccccCC---CccCCCCccCCCCCCCcccccCCCCCCcccccCCCCC-CCCcCCCCCccccccccc
Q 006947 266 FKVRPCS---RAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDF-RKGACRRGDMCEYAHGVF 327 (624)
Q Consensus 266 fKt~pC~---r~~sh~w~~Cpf~H~~~~~rRr~p~~~~y~~~~C~~~-~~g~C~~gd~C~~aH~~~ 327 (624)
+|+..|. ++.|..+..|+|.|. +.+|+.| ..|.|++|+.|.|+|...
T Consensus 11 ~k~~lC~~f~~G~C~~G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCccCcccccCcCCCCCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 3555554 466777889999994 6789999 699999999999999853
No 127
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=6.1e-05 Score=62.69 Aligned_cols=61 Identities=23% Similarity=0.429 Sum_probs=45.1
Q ss_pred cccccCC---CccCCCCccCCCCCCCcccccCCCCCCcccccCCCCCCC-CcCCCCCccccccccceeecCCCccccccc
Q 006947 266 FKVRPCS---RAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRK-GACRRGDMCEYAHGVFECWLHPAQYRTRLC 341 (624)
Q Consensus 266 fKt~pC~---r~~sh~w~~Cpf~H~~~~~rRr~p~~~~y~~~~C~~~~~-g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C 341 (624)
+|+..|. ++.|..+..|+|.|... .. +..+|+.|.+ |.|. |+.|.|+|...+ -|+..|
T Consensus 8 ~k~~~C~~fl~G~C~~G~~C~fsH~~~-~~---------~~~~C~~f~~~G~C~-~~~C~f~H~~~~-------~~~~~C 69 (77)
T 2d9n_A 8 EKTVVCKHWLRGLCKKGDQCEFLHEYD-MT---------KMPECYFYSKFGECS-NKECPFLHIDPE-------SKIKDC 69 (77)
T ss_dssp CTTSBCHHHHTTCCSCTTSSSSBCSCC-TT---------TSCBCHHHHHTCCCC-CSSCSSBCCCTT-------SSCSSS
T ss_pred CcceeCHhHccCcCCCCCCCCCccccc-cC---------cCCCCcccCCCCccC-CCCeeccCCCcc-------ccCCCC
Confidence 4555664 57788888999999432 21 2457999977 9999 899999999653 367778
Q ss_pred cCC
Q 006947 342 KDG 344 (624)
Q Consensus 342 ~~~ 344 (624)
..|
T Consensus 70 ~~f 72 (77)
T 2d9n_A 70 PWS 72 (77)
T ss_dssp SCC
T ss_pred ccc
Confidence 765
No 128
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=97.21 E-value=7.3e-05 Score=61.09 Aligned_cols=54 Identities=28% Similarity=0.571 Sum_probs=41.2
Q ss_pred CccCCCCc-cCCCCCCCcccccCCCCCCcccccCCCCCCCCcCCCCCccccccccceee
Q 006947 273 RAYSHDWT-ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECW 330 (624)
Q Consensus 273 r~~sh~w~-~Cpf~H~~~~~rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~ 330 (624)
++.|..+. +|+|+|+.+. -+-++. .++...|.+|.+|.|.+| .|.|.|...+++
T Consensus 14 ~G~C~rg~~~C~f~H~~~~-~~~~~~--~~~~~vC~~flkG~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 14 RGNCNRGENDCRFAHPADS-TMIDTN--DNTVTVCMDYIKGRCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp TTCCSSCTTTCSSBCCCTT-SCCBTT--TTEEEBCHHHHTTCCCCT-TCCSBCCCHHHH
T ss_pred cCCCCCCCCCCCCccCccc-cccccc--CCcceeccccCcCCCCCC-CcCeeCCHHHHh
Confidence 56677777 6999996432 122222 578899999999999999 999999987764
No 129
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.63 E-value=0.00033 Score=61.00 Aligned_cols=60 Identities=28% Similarity=0.579 Sum_probs=44.4
Q ss_pred ccccCC---CccCCCCc-cCCCCCCCcccccCCCCCCcccccCCCCCCCCcCCCCCccccccccceee
Q 006947 267 KVRPCS---RAYSHDWT-ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECW 330 (624)
Q Consensus 267 Kt~pC~---r~~sh~w~-~Cpf~H~~~~~rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~ 330 (624)
|+..|. ++.|...+ +|+|+|+.... +.++. ..+...|.+|.+|.|.+| .|.|.|...++.
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~-~~~~~--~~~~~vC~~flkG~C~r~-~C~y~H~~~~l~ 82 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADST-MIDTS--DNTVTVCMDYIKGRCMRE-KCKYFHPPAHLQ 82 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSCC-SCCTT--TCEEEBCHHHHHTCCCCT-TCCSBCCCHHHH
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchhc-ccccc--CCccccchhhccCCCCCC-CcCccCChHHHH
Confidence 344454 56677777 79999965432 22333 578889999999999999 999999987654
No 130
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.29 E-value=0.0009 Score=54.92 Aligned_cols=52 Identities=25% Similarity=0.490 Sum_probs=39.2
Q ss_pred ccccCC---CccCCCCccCCCCCCCcccccCCCCCCcccccCCCCCCC-CcCCCCCcccccccccee
Q 006947 267 KVRPCS---RAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRK-GACRRGDMCEYAHGVFEC 329 (624)
Q Consensus 267 Kt~pC~---r~~sh~w~~Cpf~H~~~~~rRr~p~~~~y~~~~C~~~~~-g~C~~gd~C~~aH~~~E~ 329 (624)
++..|. ++.|..+..|+|.|.-. +. +..+|..|.+ |.|.+ +.|.|.|...+.
T Consensus 15 k~~vCk~fl~G~C~~G~~C~fsH~~~------~~----~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 15 KTVVCKHWLRGLCKKGDQCEFLHEYD------MT----KMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCSBCHHHHTTCCCCGGGSSSBCSCC------TT----SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred cCeeCHHHhcCCCCCCCCCCCccccc------cc----cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 445564 57788888999999432 11 3568999988 99999 999999987653
No 131
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=94.46 E-value=0.0024 Score=53.40 Aligned_cols=64 Identities=23% Similarity=0.640 Sum_probs=45.2
Q ss_pred ccCCCc-cCCCCccCCCCCCCcccccCCCCCCcccccCCCCCCCCcCCCCCccccccccceeecCCCccccccccCCCCC
Q 006947 269 RPCSRA-YSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSC 347 (624)
Q Consensus 269 ~pC~r~-~sh~w~~Cpf~H~~~~~rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C~~~~~C 347 (624)
+.|.-. .+.+ ..|+|.|+.. ...|+.+.. |.+ ..|.|+|.. .+.|+.+..|
T Consensus 10 e~CKf~~~Ctn-~~C~f~Hp~~-------------~~~Cr~g~~--C~~-~~C~f~HP~-----------~~~Crf~~~C 61 (80)
T 2lhn_A 10 EQCKFGTHCTN-KRCKYRHARS-------------HIMCREGAN--CTR-IDCLFGHPI-----------NEDCRFGVNC 61 (80)
Confidence 345322 3555 7899999532 346777765 888 469999852 3679877899
Q ss_pred CCCccCCCCCCCC
Q 006947 348 ARRVCFFAHTPEE 360 (624)
Q Consensus 348 ~~~~C~FaH~~~e 360 (624)
.+..|.|.|-+..
T Consensus 62 ~n~~C~F~Hp~g~ 74 (80)
T 2lhn_A 62 KNIYCLFRHPPGR 74 (80)
Confidence 9999999996443
No 132
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.76 E-value=0.0086 Score=50.45 Aligned_cols=51 Identities=29% Similarity=0.517 Sum_probs=37.4
Q ss_pred CccCCCCc-cCCCCCCCcccccCCCCCCcccccCCCCCCCCcCCCCCcccccccccee
Q 006947 273 RAYSHDWT-ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFEC 329 (624)
Q Consensus 273 r~~sh~w~-~Cpf~H~~~~~rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E~ 329 (624)
++.|...+ +|.|+|+...- ..-.-+-..|.+|.+|.|.++ .|.|.|...++
T Consensus 17 rG~C~r~d~~C~f~H~~~~~-----~~~~~~~~vC~dflkG~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 17 RGTCSRPDTECKFAHPSKSC-----QVENGRVIACFDSLKGRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp GTCCCSCTTTCSSBCCCTTC-----CEETTEEECCHHHHTTCCCCS-SCSSCCCCHHH
T ss_pred cCCCCCCCCCCCCcCCCccc-----cccCCceeehhHhhhccccCC-CcceeCChHHH
Confidence 46677774 89999965321 111335677999999999999 89999997654
No 133
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=93.24 E-value=0.0083 Score=50.15 Aligned_cols=42 Identities=29% Similarity=0.744 Sum_probs=34.8
Q ss_pred ccCCCCCCCCcCCCCCccccccccceeecCCCccccccccCCCCCCCCccCCCCC
Q 006947 303 CVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCARRVCFFAHT 357 (624)
Q Consensus 303 ~~~C~~~~~g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C~~~~~C~~~~C~FaH~ 357 (624)
-+.|+.+.. |++ +.|.|+|... ...|+.|..|.+..|.|+|-
T Consensus 9 ~e~CKf~~~--Ctn-~~C~f~Hp~~----------~~~Cr~g~~C~~~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGTH--CTN-KRCKYRHARS----------HIMCREGANCTRIDCLFGHP 50 (80)
Confidence 356877777 999 8999999642 34799999999999999995
No 134
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=92.88 E-value=0.022 Score=48.55 Aligned_cols=50 Identities=30% Similarity=0.572 Sum_probs=36.7
Q ss_pred CccCCCCc-cCCCCCCCcccccCCCCCCcccccCCCCCCCCcCCCCCccccccccce
Q 006947 273 RAYSHDWT-ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFE 328 (624)
Q Consensus 273 r~~sh~w~-~Cpf~H~~~~~rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~~~E 328 (624)
++.|.... +|.|+|+....... .-+-..|.+|.+|.|.++ .|.|.|....
T Consensus 25 rG~C~r~d~~CrfsH~~~~~~v~-----~~~~~vC~dflkG~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 25 RGTCSRSDEECKFAHPPKSCQVE-----NGRVIACFDSLKGRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp HTCCCCCTTTSSSBCCCSSSCCB-----TTBEEBCHHHHHTCCCCT-TCCSBCCCHH
T ss_pred cCCCCCCCCCCCCcCCCcccccc-----CCceeeehhhhhCcCCCC-CcceecCHHH
Confidence 45666666 89999975532111 224667999999999998 8999998653
No 135
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=89.43 E-value=0.069 Score=40.27 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=24.0
Q ss_pred ccccCCCCC-CCCcCCCCCccccccccc
Q 006947 301 YSCVPCPDF-RKGACRRGDMCEYAHGVF 327 (624)
Q Consensus 301 y~~~~C~~~-~~g~C~~gd~C~~aH~~~ 327 (624)
.++.+|..| ..|-|++|..|++.|.+.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 678899999 679999999999999863
No 136
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=84.31 E-value=0.32 Score=36.69 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.0
Q ss_pred cccccccCC---CCCCCCc-cCCCCCCC
Q 006947 336 YRTRLCKDG---TSCARRV-CFFAHTPE 359 (624)
Q Consensus 336 ykT~~C~~~---~~C~~~~-C~FaH~~~ 359 (624)
++|.+|+.| |.|+++. |.|.|+.+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 789999976 9999975 99999875
No 137
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=78.63 E-value=0.34 Score=48.52 Aligned_cols=24 Identities=42% Similarity=0.777 Sum_probs=21.4
Q ss_pred ccCCCCCCCCcCCCCCcccccccc
Q 006947 303 CVPCPDFRKGACRRGDMCEYAHGV 326 (624)
Q Consensus 303 ~~~C~~~~~g~C~~gd~C~~aH~~ 326 (624)
+-.|..|.+|.|++|+.|.|.|.+
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSC
T ss_pred CeEcCccccCCCCCCCCCCccCCC
Confidence 348999999999999999999974
No 138
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=67.10 E-value=3 Score=41.13 Aligned_cols=45 Identities=22% Similarity=0.555 Sum_probs=35.8
Q ss_pred cccccCCCCCCC-----CcCCCCCccccccccceeecCCCccccccccCC--CCCCCCccCCCCCCCC
Q 006947 300 HYSCVPCPDFRK-----GACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG--TSCARRVCFFAHTPEE 360 (624)
Q Consensus 300 ~y~~~~C~~~~~-----g~C~~gd~C~~aH~~~E~~~hP~~ykT~~C~~~--~~C~~~~C~FaH~~~e 360 (624)
..-+++|..| + |.|.++++|..-| .|+.| |.|.+..|.=.|+-.+
T Consensus 148 ~lLPeiC~~Y-kG~g~~g~C~~~~~C~kLH---------------IC~~Fl~G~C~f~~CkRsH~~~~ 199 (229)
T 3u9g_A 148 FFLPEICKSY-KGEGRKQTCGQPQPCERLH---------------ICEHFTRGNCSYLNCLRSHNLMD 199 (229)
T ss_dssp GGSCCBCTTC-CCSSSCCSCSSSSCCCSBC---------------SCHHHHTTCCCCSSCSSCCCTTS
T ss_pred ccCchHHHHh-CCCCCCCcCCCCCCCccee---------------ccchhhcCCcCCCCccCccCccC
Confidence 4568999999 6 4899999998665 48777 8898877988888644
No 139
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=63.28 E-value=1.8 Score=42.78 Aligned_cols=32 Identities=34% Similarity=0.662 Sum_probs=2.1
Q ss_pred ccCCCCCCcccccCCCCCCCCcCCCCCccccccc
Q 006947 292 RRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHG 325 (624)
Q Consensus 292 rRr~p~~~~y~~~~C~~~~~g~C~~gd~C~~aH~ 325 (624)
.|..|..-.-+..+||..++ |+||.+|.|-|.
T Consensus 181 L~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 212 (223)
T 3v33_A 181 LRKKPLTLEHRKQPCPYGRK--CTYGIKCRFFHP 212 (223)
T ss_dssp TBSCC-----------------------------
T ss_pred hccCCCCcccCCCCCCCCcc--cccCCcceecCC
Confidence 34444433345677888887 999999999887
No 140
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=23.54 E-value=17 Score=35.81 Aligned_cols=23 Identities=30% Similarity=0.725 Sum_probs=0.0
Q ss_pred ccccccCCCCCCCCc-cCCCCCCC
Q 006947 337 RTRLCKDGTSCARRV-CFFAHTPE 359 (624)
Q Consensus 337 kT~~C~~~~~C~~~~-C~FaH~~~ 359 (624)
|.++|-.+..|.|+. |.|.|-+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGRKCTYGIKCRFFHPER 214 (223)
T ss_dssp ------------------------
T ss_pred CCCCCCCCcccccCCcceecCCcc
Confidence 456677777788875 88888654
No 141
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=22.91 E-value=1.3e+02 Score=32.37 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=77.9
Q ss_pred cChHHHHHHHHcCC--------------HHHHHHHHhcCCCCCcccccccccccCCccccCCCCchHHHHHhcCCHHHHH
Q 006947 40 DAFASLLELAANND--------------VEGFKRSIVCDPSGVDEVGLWYGRQKGSKQMVNEQRTPLMVAATYGSIDIIR 105 (624)
Q Consensus 40 dg~TpLh~AA~~Gd--------------le~Vk~LLe~~GadvN~~~l~~~~~~~~~~~D~~G~TPLhlAA~~G~~eiVk 105 (624)
.-++.|+.++.... .++++.+.+ .|..+|...+ .+.+...+..|..+-+.
T Consensus 62 ~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~ty---------------n~lI~~~~~~g~~~~A~ 125 (501)
T 4g26_A 62 YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-DKVVPNEATF---------------TNGARLAVAKDDPEMAF 125 (501)
T ss_dssp HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHHHH---------------HHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-hCCCCCHHHH---------------HHHHHHHHhcCCHHHHH
Confidence 34566776665432 234555555 6777666531 24456677888877665
Q ss_pred HHHHh---cCCCccccCCCCCChHHHHHHhCCCC-ChHHHHHHHHHCCCCCCCcCCCCCcHHHHHhcCCChhhHHHHHHH
Q 006947 106 LILSE---SGADVNLSCGNDKSTALHCAASGGAL-NAVDVVKLLLAAGADPNFVDAKGHHPVDVIVVPPKFQDVRLTLEE 181 (624)
Q Consensus 106 lLL~~---~GADVN~~~d~~G~TPLH~Aa~~G~~-~~~eiVklLL~~GAD~n~~D~~G~TPLhlAa~~g~~~~~~~lLe~ 181 (624)
.|++. .|..+|.. . -.+.|...+..|.. .+.++.+.+.+.|..++.... .+-+...+..|..+....+++.
T Consensus 126 ~l~~~M~~~g~~Pd~~-t--yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 126 DMVKQMKAFGIQPRLR-S--YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHHTTCCCCHH-H--HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccc-e--ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHhhCCCHHHHHHHHHH
Confidence 55532 26666654 1 12344555677772 123445556677887776543 2345555668888888889998
Q ss_pred HHHCCCCCc
Q 006947 182 LLATDGSVE 190 (624)
Q Consensus 182 LL~~gadv~ 190 (624)
+.+.+..++
T Consensus 201 Mr~~g~~ps 209 (501)
T 4g26_A 201 LRDLVRQVS 209 (501)
T ss_dssp HHHHTSSBC
T ss_pred HHHhCCCcC
Confidence 888887665
Done!