BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006949
(624 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 196 GAASSSNAMLMKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTI 252
GA S + +K C +L + + + + W F PVDV L + DY +IKHPMD+ TI
Sbjct: 1 GAMGSKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTI 60
Query: 253 KCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
K K+ S +Y D F ADVRL FSN YNPP ++V MA L+ FE+R+
Sbjct: 61 KSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRF 111
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 192 KKPAGAASSSNAMLMKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMD 248
+ PA SS + +K C +L + + + + W F PVDV L + DY +IKHPMD
Sbjct: 8 QHPAPEKSSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMD 67
Query: 249 LGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
+ TIK K+ + +Y D F ADVRL FSN YNPP ++V MA L+ FE+R+
Sbjct: 68 MSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRF 122
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 192 KKPAGAASSSNAMLMKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMD 248
+ PA SS + +K C +L + + + + W F PVDV L + DY +IKHPMD
Sbjct: 10 QHPAPEKSSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMD 69
Query: 249 LGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
+ TIK K+ + +Y D F ADVRL FSN YNPP ++V MA L+ FE+R+
Sbjct: 70 MSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRF 124
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 95.5 bits (236), Expect = 8e-20, Method: Composition-based stats.
Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 206 MKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS 262
+K C +L L+S + + W F PVD L + DY +IKHPMDL T+K K+ + Y
Sbjct: 7 LKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 66
Query: 263 DPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
D FAADVRL FSN YNPP +DV MA L+ FE R+
Sbjct: 67 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRY 107
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 94.7 bits (234), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 206 MKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS 262
+K C +L L+S + + W F PVD L + DY +IKHPMDL T+K K+ + Y
Sbjct: 9 LKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 68
Query: 263 DPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
D FAADVRL FSN YNPP +DV MA L+ FE R+
Sbjct: 69 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRY 109
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 94.0 bits (232), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 206 MKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS 262
+K C +L L+S + + W F PVD L + DY +IKHPMDL T+K K+ + Y
Sbjct: 3 LKHCNVILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 62
Query: 263 DPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
D FAADVRL FSN YNPP +DV MA L+ FE R+
Sbjct: 63 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRY 103
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 92.8 bits (229), Expect = 5e-19, Method: Composition-based stats.
Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 206 MKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS 262
++ C+++L ++S + + W F PVD L + DY +IKHPMDL T+K K+ +Y
Sbjct: 14 LRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYP 73
Query: 263 DPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
D FAADVRL FSN YNPP ++V MA L+ FE+R+
Sbjct: 74 DAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRF 114
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 92.4 bits (228), Expect = 6e-19, Method: Composition-based stats.
Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 206 MKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS 262
++ C+++L ++S + + W F PVD L + DY +IKHPMDL T+K K+ +Y
Sbjct: 9 LRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYP 68
Query: 263 DPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
D FAADVRL FSN YNPP ++V MA L+ FE+R+
Sbjct: 69 DAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRF 109
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 92.4 bits (228), Expect = 7e-19, Method: Composition-based stats.
Identities = 44/101 (43%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 206 MKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS 262
+K C +L + + + + W F PVDV L + DY +IKHPMD+ TIK K+ + +Y
Sbjct: 3 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYR 62
Query: 263 DPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
D F ADVRL FSN YNPP ++V MA L+ FE+R+
Sbjct: 63 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRF 103
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 206 MKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS 262
+K C +L +++ + + W F PVD L + +Y+ V+K+PMDLGTIK K+ + +Y
Sbjct: 16 LKHCSEILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYK 75
Query: 263 DPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAI 306
D FAADVRL F N YNPP ++V MA TL+ FE+ + I
Sbjct: 76 DAYEFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKI 119
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 53/88 (60%)
Query: 212 LLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADV 271
+L L HQF W F PVD +KLN+PDY+ +IK PMD+GTIK ++ + Y + D
Sbjct: 49 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDF 108
Query: 272 RLTFSNAMTYNPPQNDVHIMADTLRKYF 299
F+N YN P +D+ +MA+ L K F
Sbjct: 109 NTMFTNCYIYNKPGDDIVLMAEALEKLF 136
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 184 GNSGRLEPKKPAGAASSSNAMLMKQCENLL----TRLMSHQFGWVFNTPVDVMKLNIPDY 239
G G P P + + Q + LL L HQF W F PVD +KLN+PDY
Sbjct: 1 GAMGSTNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDY 60
Query: 240 FTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299
+ +IK PMD+GTIK ++ + Y + D F+N YN P +D+ +MA+ L K F
Sbjct: 61 YKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLF 120
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 191 PKKPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLG 250
PKKP G ++ L K ++ L HQF W F PVD +KL +PDY +IK PMD+G
Sbjct: 23 PKKP-GRVTNQLQYLHKV---VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMG 78
Query: 251 TIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299
TIK ++ + Y D F+N YN P +D+ +MA TL K F
Sbjct: 79 TIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 127
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 53/88 (60%)
Query: 212 LLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADV 271
+L L HQF W F PVD +KLN+PDY+ +IK PMD+GTIK ++ + Y + D
Sbjct: 29 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDF 88
Query: 272 RLTFSNAMTYNPPQNDVHIMADTLRKYF 299
F+N YN P +D+ +MA+ L K F
Sbjct: 89 NTMFTNCYIYNKPGDDIVLMAEALEKLF 116
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/88 (43%), Positives = 53/88 (60%)
Query: 212 LLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADV 271
+L L HQF W F PVD +KLN+PDY+ +IK PMD+GTIK ++ + Y + D
Sbjct: 29 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDF 88
Query: 272 RLTFSNAMTYNPPQNDVHIMADTLRKYF 299
F+N YN P +D+ +MA+ L K F
Sbjct: 89 NTMFTNCYIYNKPGDDIVLMAEALEKLF 116
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 191 PKKPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLG 250
PKKP G ++ L K ++ L HQF W F PVD +KL +PDY +IK PMD+G
Sbjct: 23 PKKP-GRVTNQLQYLHKV---VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMG 78
Query: 251 TIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299
TIK ++ + Y D F+N YN P +D+ +MA TL K F
Sbjct: 79 TIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIF 127
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 64/112 (57%), Gaps = 6/112 (5%)
Query: 192 KKPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGT 251
KKP S A+ C +LT + +H+ W F PV+ +KL +P Y VIK PMD T
Sbjct: 5 KKPKRDDSKDLAL----CSMILTEMETHEDAWPFLLPVN-LKL-VPGYKKVIKKPMDFST 58
Query: 252 IKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
I+ K++SGQY + FA DVRL F N T+N +D+ +RKYFE +W
Sbjct: 59 IREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 110
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 199 SSSNAMLMKQCENLLTRLMSHQ---FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCK 255
SS + +K C +L + + + W F PVDV L + DY +IKHP D TIK K
Sbjct: 2 SSKISEQLKCCSGILKEXFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPXDXSTIKSK 61
Query: 256 ITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
+ S +Y D F ADVRL FSN YNPP ++V A L+ FE R+
Sbjct: 62 LESREYRDAQEFGADVRLXFSNCYKYNPPDHEVVAXARKLQDVFEXRF 109
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 82.8 bits (203), Expect = 6e-16, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 191 PKKPAGAASSSNAMLMKQCENLLTR-LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDL 249
P KP + M +N++ + L HQF W F PVD +KLN+PDY +IK+PMD+
Sbjct: 10 PSKPGRKTNQLQYM-----QNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDM 64
Query: 250 GTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299
GTIK ++ + Y D F+N YN P +D+ +MA L K F
Sbjct: 65 GTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIF 114
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 82.0 bits (201), Expect = 8e-16, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 191 PKKPAGAASSSNAMLMKQCENLLTR-LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDL 249
P KP + M +N++ + L HQF W F PVD +KLN+PDY +IK+PMD+
Sbjct: 8 PSKPGRKTNQLQYM-----QNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDM 62
Query: 250 GTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299
GTIK ++ + Y D F+N YN P +D+ +MA L K F
Sbjct: 63 GTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIF 112
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 209 CENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFA 268
C +LT + +H+ W F PV+ +KL +P Y VIK PMD TI+ K++SGQY + FA
Sbjct: 15 CSMILTEMETHEDAWPFLLPVN-LKL-VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFA 72
Query: 269 ADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRW 303
DVRL F N T+N +D+ +RKYFE +W
Sbjct: 73 LDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 107
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 199 SSSNAMLMKQCENL----LTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKC 254
+ N L Q + L L L H F W F PVD +KL +PDY+T+IK+PMDL TIK
Sbjct: 4 TKKNGRLTNQLQYLQKVVLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKK 63
Query: 255 KITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299
++ + Y+ D FSN YN P +D+ +MA L K F
Sbjct: 64 RLENKYYAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLF 108
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 191 PKKPAGAASSSNAMLMKQCENLLTR-LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDL 249
P KP + M +N++ + L HQF W F PVD +KLN+PDY +IK+PMD+
Sbjct: 12 PSKPGRKTNQLQYM-----QNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDM 66
Query: 250 GTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299
GTIK ++ + Y D F+N YN P +D+ +MA L K F
Sbjct: 67 GTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIF 116
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 48/88 (54%)
Query: 212 LLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADV 271
+L L H F W F PVD +KL +PDY+T+IK PMDL TIK ++ + Y D
Sbjct: 22 VLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDF 81
Query: 272 RLTFSNAMTYNPPQNDVHIMADTLRKYF 299
FSN YN +D+ +MA L K F
Sbjct: 82 NTMFSNCYLYNKTGDDIVVMAQALEKLF 109
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 207 KQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS--GQYSDP 264
++CE LL L H+ F PV L +PDY+ +IK+PMDL TIK ++ YS P
Sbjct: 23 RKCERLLLFLYCHEMSLAFQDPV---PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKP 79
Query: 265 LAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAI--EKKLP 311
F AD RL F N +N P ++V L YFE K + EK+ P
Sbjct: 80 EDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRFP 128
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 45/84 (53%)
Query: 216 LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275
L HQF W F PVD +KL +PDY +IK P D GTIK ++ + Y D F
Sbjct: 18 LWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXF 77
Query: 276 SNAMTYNPPQNDVHIMADTLRKYF 299
+N YN P +D+ + A TL K F
Sbjct: 78 TNCYIYNKPTDDIVLXAQTLEKIF 101
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 75.5 bits (184), Expect = 9e-14, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 45/84 (53%)
Query: 216 LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275
L HQF W F PVD +KL +PDY +IK P D GTIK ++ + Y D F
Sbjct: 24 LWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXF 83
Query: 276 SNAMTYNPPQNDVHIMADTLRKYF 299
+N YN P +D+ + A TL K F
Sbjct: 84 TNCYIYNKPTDDIVLXAQTLEKIF 107
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 46/76 (60%)
Query: 225 FNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284
F PVD L IPDYF ++K+PMDL TIK K+ +GQY +P + DV L F+NA YN
Sbjct: 35 FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 94
Query: 285 QNDVHIMADTLRKYFE 300
+ V+ L + FE
Sbjct: 95 TSRVYKFCSKLAEVFE 110
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 46/76 (60%)
Query: 225 FNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284
F PVD L IPDYF ++K+PMDL TIK K+ +GQY +P + DV L F+NA YN
Sbjct: 33 FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 92
Query: 285 QNDVHIMADTLRKYFE 300
+ V+ L + FE
Sbjct: 93 TSRVYKFCSKLAEVFE 108
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%)
Query: 225 FNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284
F PVD L IPDYF ++K PMDL TIK K+ +GQY +P + D+ L F+NA YN
Sbjct: 38 FRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRK 97
Query: 285 QNDVHIMADTLRKYFE 300
+ V+ L + FE
Sbjct: 98 TSRVYKYCSKLSEVFE 113
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 207 KQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS--GQYSDP 264
++CE LL L H+ F PV L +PDY+ +IK+PMDL TIK ++ YS P
Sbjct: 84 RKCERLLLFLYCHEMSLAFQDPV---PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKP 140
Query: 265 LAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFE 300
F AD RL F N +N P ++V L YFE
Sbjct: 141 EDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFE 176
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 210 ENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAA 269
+N+LT L +H W F PV+ K +PDY+ IK PMDL T++ K+ S +Y F
Sbjct: 19 QNILTELQNHAAAWPFLQPVN--KEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIY 76
Query: 270 DVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAI 306
D RL F+N YN + A+ L K+F + K I
Sbjct: 77 DARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEI 113
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 7/139 (5%)
Query: 160 PSVVLAPKGKKRAPNGRN-GPQTKKGNSGRLEPKKPAGAASSSNAMLMKQCENLLTRLMS 218
P+++ P G R+ G + + L+ K A + + ++CE LL L
Sbjct: 36 PTLLSFPSGDWICTFCRDIGKPEVEYDCDNLQHSKKGKTAQGLSPVDQRKCERLLLYLYC 95
Query: 219 HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKIT---SGQYSDPLAFAADVRLTF 275
H+ F PV +IP+Y+ +IK PMDL T+K K+ S Y P F ADVRL F
Sbjct: 96 HELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIF 152
Query: 276 SNAMTYNPPQNDVHIMADT 294
N +N V + ADT
Sbjct: 153 KNCERFNEMMKVVQVYADT 171
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 207 KQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLA 266
KQC+ L+ + + F PVD+++ PDY +I PMD GT++ + +G Y PL
Sbjct: 13 KQCKELVNLIFQCEDSEPFRQPVDLVEY--PDYRDIIDTPMDFGTVRETLDAGNYDSPLE 70
Query: 267 FAADVRLTFSNAMTYNP-PQNDVHIMADTLRKYFEVRWKAIEKKLPV 312
F D+RL FSNA Y P ++ ++ M L FE + K I +
Sbjct: 71 FCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSDFKI 117
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 45/88 (51%)
Query: 212 LLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADV 271
L+ L ++ G +F VD K N PDY+ VIK+P IK K+ GQY+ P F DV
Sbjct: 29 LILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDV 88
Query: 272 RLTFSNAMTYNPPQNDVHIMADTLRKYF 299
+L F N YN + V I + YF
Sbjct: 89 QLIFDNCSLYNTSNSVVAITGKNIETYF 116
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDP 264
L +++L ++ SHQ W F PV + P Y+ VI+ PMDL T+ ++ + Y
Sbjct: 16 LYSTLKSILQQVKSHQSAWPFMEPVK--RTEAPGYYEVIRFPMDLKTMSERLKNRYYVSK 73
Query: 265 LAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299
F AD++ F+N YNPP+++ + A+ L K+F
Sbjct: 74 KLFMADLQRVFTNCKEYNPPESEYYKCANILEKFF 108
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDP 264
L +++L ++ SHQ W F PV + P Y+ VI+ PMDL T+ ++ + Y
Sbjct: 14 LYSTLKSILQQVKSHQSAWPFMEPVK--RTEAPGYYEVIRFPMDLKTMSERLKNRYYVSK 71
Query: 265 LAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299
F AD++ F+N YNPP+++ + A+ L K+F
Sbjct: 72 KLFMADLQRVFTNCKEYNPPESEYYKCANILEKFF 106
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 207 KQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLA 266
KQCE LL + + F PVD+ L PDY +I PMD T++ + +G Y P+
Sbjct: 24 KQCEELLNLIFQCEDSEPFRQPVDL--LEYPDYRDIIDTPMDFATVRETLEAGNYESPME 81
Query: 267 FAADVRLTFSNAMTYNPPQND-VHIMADTLRKYFE 300
DVRL FSN+ Y P + ++ M+ L +FE
Sbjct: 82 LCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFE 116
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDP 264
L +NLL ++ SH W F PV K PDY+ VI+ P+DL T+ ++ S Y
Sbjct: 4 LYTTLKNLLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLRSRYYVTR 61
Query: 265 LAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWK 304
F AD++ +N YNPP ++ A L K+F + K
Sbjct: 62 KLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLK 101
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDP 264
L +NLL ++ SH W F PV K PDY+ VI+ P+DL T+ ++ S Y
Sbjct: 8 LYTTLKNLLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLRSRYYVTR 65
Query: 265 LAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWK 304
F AD++ +N YNPP ++ A L K+F + K
Sbjct: 66 KLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLK 105
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 210 ENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAA 269
+ +L L +H+ W F PVD + PDY+ VIK PMDL T++ ++ Y F A
Sbjct: 78 KRVLRSLQAHKMAWPFLEPVD--PNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVA 135
Query: 270 DVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307
D+ F N YNP + + A+ L +F + K +
Sbjct: 136 DMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 212 LLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADV 271
+L L +H+ W F PVD + PDY+ VIK PMDL T++ ++ Y F AD+
Sbjct: 80 VLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 137
Query: 272 RLTFSNAMTYNPPQNDVHIMADTLRKYF 299
F N YNP + + A+ L +F
Sbjct: 138 TKIFDNCRYYNPSDSPFYQCAEVLESFF 165
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 212 LLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADV 271
+L L +H+ W F PVD + PDY+ VIK PMDL T++ ++ Y F AD+
Sbjct: 21 VLRSLQAHKMAWPFLEPVD--PNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 78
Query: 272 RLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307
F N YNP + + A+ L +F + K +
Sbjct: 79 TAIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 114
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 212 LLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADV 271
+L L +H+ W F PVD + PDY+ VIK PMDL T++ ++ Y F AD+
Sbjct: 28 VLRSLQAHKMAWPFLEPVD--PNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADM 85
Query: 272 RLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307
F N YNP + + A+ L +F + K +
Sbjct: 86 TKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 121
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 210 ENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAA 269
+ +L L +H+ W F PVD + PDY+ VIK PMDL T++ ++ Y F A
Sbjct: 19 KRVLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVA 76
Query: 270 DVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307
D+ F N YNP + + A+ L +F + K +
Sbjct: 77 DMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 114
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 233 KLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMA 292
K+ PDY+ +IK P+DL TI +I +G Y A A D+ L NA TYN P + V A
Sbjct: 42 KVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDA 101
Query: 293 DTLRKYFEVRWKAIE 307
++++K F ++ IE
Sbjct: 102 NSIKKIFYMKKAEIE 116
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 233 KLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMA 292
K+ PDY+ +IK P+DL TI +I +G Y A A D+ L NA TYN P + V A
Sbjct: 41 KVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDA 100
Query: 293 DTLRKYFEVRWKAIE 307
++++K F ++ IE
Sbjct: 101 NSIKKIFYMKKAEIE 115
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 233 KLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMA 292
K+ PDY+ +IK P+DL TI +I +G Y A A D+ L NA TYN P + V A
Sbjct: 39 KVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDA 98
Query: 293 DTLRKYFEVRWKAIE 307
++++K F ++ IE
Sbjct: 99 NSIKKIFYMKKAEIE 113
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 210 ENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAA 269
+ +L L +H+ W F PVD + PDY+ VIK P DL T + ++ Y F A
Sbjct: 78 KRVLRSLQAHKXAWPFLEPVD--PNDAPDYYGVIKEPXDLATXEERVQRRYYEKLTEFVA 135
Query: 270 DVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307
D F N YNP + + A+ L +F + K +
Sbjct: 136 DXTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 210 ENLLT-RLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFA 268
+N++T ++M+ W F+ PV+ K +PDY+ VI +PMDL TI+ I+ +Y +F
Sbjct: 175 DNIVTQKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFL 232
Query: 269 ADVRLTFSNAMTYNPP--------QNDVHIMADTLRKYFE 300
DV L +N++ YN P Q V++ TL +Y E
Sbjct: 233 DDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 272
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 223 WVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282
+ F+TPV+ + DY+ +I PMDL T++ + Y F + L N+ TYN
Sbjct: 66 YPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 123
Query: 283 PPQNDVHIMADTLRKYFEVRWKAIEKKL 310
P++ + ++ ++ + + K E KL
Sbjct: 124 GPKHSLTQISQSMLDLCDEKLKEKEDKL 151
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%)
Query: 237 PDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMA 292
P Y +IKHPMD GT+K KI + +Y F AD +L NAMTYN P + +A
Sbjct: 44 PGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLA 99
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 210 ENLLT-RLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFA 268
+N++T ++M+ W F+ PV+ K +PDY+ VI +PMDL TI+ I+ +Y +F
Sbjct: 142 DNIVTQKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFL 199
Query: 269 ADVRLTFSNAMTYNPP--------QNDVHIMADTLRKYFE 300
DV L +N++ YN P Q V++ TL +Y E
Sbjct: 200 DDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 239
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 223 WVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282
+ F+TPV+ + DY+ +I PMDL T++ + Y F + L N+ TYN
Sbjct: 33 YPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 90
Query: 283 PPQNDVHIMADTLRKYFEVRWKAIEKKL 310
P++ + ++ ++ + + K E KL
Sbjct: 91 GPKHSLTQISQSMLDLCDEKLKEKEDKL 118
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 210 ENLLT-RLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFA 268
+N++T ++M+ W F+ PV+ K +PDY+ VI +PMDL TI+ I+ +Y +F
Sbjct: 154 DNIVTQKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFL 211
Query: 269 ADVRLTFSNAMTYNPP--------QNDVHIMADTLRKYFE 300
DV L +N++ YN P Q V++ TL +Y E
Sbjct: 212 DDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 251
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 223 WVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282
+ F+TPV+ + DY+ +I PMDL T++ + Y F + L N+ TYN
Sbjct: 45 YPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 102
Query: 283 PPQNDVHIMADTLRKYFEVRWKAIEKKL 310
P++ + ++ ++ + + K E KL
Sbjct: 103 GPKHSLTQISQSMLDLCDEKLKEKEDKL 130
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 215 RLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLT 274
RL + + +F+ PVD+ + + DY VIK PMDL T+ KI Y F D+ L
Sbjct: 23 RLATDKRFNIFSKPVDIEE--VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLI 80
Query: 275 FSNAMTYNPPQN 286
SNA+ YNP ++
Sbjct: 81 CSNALEYNPDKD 92
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 210 ENLLT-RLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFA 268
+N++T ++M+ W F+ PV+ K +PDY+ VI +PMDL TI+ I+ +Y +F
Sbjct: 35 DNIVTQKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFL 92
Query: 269 ADVRLTFSNAMTYNPP--------QNDVHIMADTLRKY 298
DV L +N++ YN P Q V++ TL +Y
Sbjct: 93 DDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 130
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 57/100 (57%), Gaps = 11/100 (11%)
Query: 210 ENLLT-RLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFA 268
+N++T ++M+ W F+ PV+ K +PDY+ +I +P+DL TI+ I+ +Y +F
Sbjct: 32 DNIVTQKMMAVPDSWPFHHPVN--KKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFL 89
Query: 269 ADVRLTFSNAMTYNPPQND--------VHIMADTLRKYFE 300
DV L +N++ YN P++ V+I T+ +Y E
Sbjct: 90 DDVNLILANSVKYNGPESQYTKTAQEIVNICYQTITEYDE 129
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 218 SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277
+H+ W F PVD + P+Y+ +IK PMD+ +++ K+ G Y F D++ F N
Sbjct: 30 AHKDSWPFLEPVD--ESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRN 87
Query: 278 AMTYNPPQNDVHIMADTLRKYF 299
YN ++ M+D L + F
Sbjct: 88 CRKYNGESSEYTKMSDNLERCF 109
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 236 IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTL 295
+P+Y+ ++ PM L +K + GQYS F D+ L F NA +N P ++ A TL
Sbjct: 243 LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 302
Query: 296 RKYF 299
YF
Sbjct: 303 TNYF 306
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 236 IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTL 295
+P+Y+ ++ PM L +K + GQYS F D+ L F NA +N P ++ A TL
Sbjct: 228 LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 287
Query: 296 RKYF 299
YF
Sbjct: 288 TNYF 291
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 211 NLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAAD 270
N+ RL + VF PVD + +PDY TVIK PMDL ++ KI +Y + D
Sbjct: 17 NVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRD 74
Query: 271 VRLTFSNAMTYNPPQN 286
+ L SNA+ YNP ++
Sbjct: 75 IDLICSNALEYNPDRD 90
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 236 IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTL 295
+PDY+ IK PMD+ I+ + + +Y D + D + F+NA TYN P++ ++ A L
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVL 110
Query: 296 RK 297
K
Sbjct: 111 HK 112
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 236 IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTL 295
+PDY+ IK PMD+ I+ + + +Y D + D + F+NA TYN P++ ++ A L
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVL 110
Query: 296 RK 297
K
Sbjct: 111 HK 112
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 195 AGAASSSNAM--LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTI 252
+ SS N + L ++ RL + + +F+ PV DY VIK PMDL T+
Sbjct: 1 GSSGSSGNTLRELRLFLRDVTKRLATDKRFNIFSKPV-------SDYLEVIKEPMDLSTV 53
Query: 253 KCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286
KI Y F D+ L SNA+ YNP ++
Sbjct: 54 ITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKD 87
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 233 KLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP----QNDV 288
K + PDY+ +I PMDL I+ I + +Y+ D++L F NA YN ND
Sbjct: 58 KKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDA 117
Query: 289 HIMADTLRK 297
HI+ L++
Sbjct: 118 HILEKLLKE 126
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 236 IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTL 295
+P+Y+ ++ P L +K + GQYS F D L F NA +N P ++ A TL
Sbjct: 187 LPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTL 246
Query: 296 RKYF 299
YF
Sbjct: 247 TNYF 250
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 224 VFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282
+F PV + + +PDY IKHPMD T++ ++ + Y + F D L N M YN
Sbjct: 33 IFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYN 89
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 236 IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTL 295
+P+Y+ ++ P L +K + GQYS F D L F NA +N P ++ A TL
Sbjct: 193 LPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTL 252
Query: 296 RKYF 299
YF
Sbjct: 253 TNYF 256
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 196 GAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCK 255
G++ SS +++ L +L G +F+ PV + + +PDY IK PMD T+K
Sbjct: 1 GSSGSSGFLIL--LRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQN 56
Query: 256 ITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRK 297
+ + +Y + F D L SN + YN + A LR+
Sbjct: 57 LEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLRE 98
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 237 PDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTL 295
P Y +IKHPMD T+K KI + Y + +L +NAM YN P+ + A L
Sbjct: 39 PGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKL 97
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 235 NIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286
N PDY+ V+ P+DL I+ K+ +Y D AD +L F+NA +Y P +
Sbjct: 40 NQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDS 91
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 237 PDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLR 296
PDY+ IK P+ L I+ K+ + +Y D+ L F NA YN P + ++ L+
Sbjct: 54 PDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQ 113
Query: 297 KYFEVRWKAIEKK 309
+ + + K + ++
Sbjct: 114 QVMQAKKKELARR 126
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 234 LNIP------DYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQND 287
LN+P DY+ I P+DL TI+ +I +G Y AF AD+ F NA Y ++
Sbjct: 37 LNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSP 96
Query: 288 VHIMADTLRK-YFEVRWKA 305
V LRK Y+ R +A
Sbjct: 97 VGRDVCRLRKAYYNARHEA 115
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 236 IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTL 295
+P+Y+ +I+ P+D IK +I + +Y DV L NA T+N + ++ + L
Sbjct: 48 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 107
Query: 296 RKYFEVRWKAIEK 308
+ F + IEK
Sbjct: 108 QSVFTSVRQKIEK 120
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 236 IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTL 295
+P+Y+ +I+ P+D IK +I + +Y DV L NA T+N + ++ + L
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 108
Query: 296 RKYFEVRWKAIEK 308
+ F + IEK
Sbjct: 109 QSVFTSVRQKIEK 121
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 236 IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTL 295
+P+Y+ +I+ P+D IK +I + +Y DV L NA T+N + ++ + L
Sbjct: 44 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 103
Query: 296 RKYFEVRWKAIEK 308
+ F + IEK
Sbjct: 104 QSVFTSVRQKIEK 116
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 236 IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282
+P+Y+ +I+ P+D IK +I + +Y DV L NA T+N
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFN 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,356,932
Number of Sequences: 62578
Number of extensions: 624701
Number of successful extensions: 1156
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 119
length of query: 624
length of database: 14,973,337
effective HSP length: 105
effective length of query: 519
effective length of database: 8,402,647
effective search space: 4360973793
effective search space used: 4360973793
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)