Query 006949
Match_columns 624
No_of_seqs 387 out of 1521
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 16:47:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 3E-42 6.6E-47 392.2 18.8 377 42-425 55-529 (640)
2 cd05495 Bromo_cbp_like Bromodo 99.9 2E-27 4.3E-32 214.2 12.0 104 203-306 2-106 (108)
3 cd05496 Bromo_WDR9_II Bromodom 99.9 2.1E-27 4.5E-32 217.5 11.8 106 203-310 4-110 (119)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 2.5E-27 5.4E-32 213.2 11.0 103 204-306 5-107 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 9.2E-27 2E-31 206.1 10.1 95 206-302 2-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 1.7E-26 3.8E-31 204.4 10.0 99 205-303 1-99 (99)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 2.8E-26 6E-31 202.9 10.0 96 206-303 2-97 (97)
8 cd05498 Bromo_Brdt_II_like Bro 99.9 4.1E-26 9E-31 203.1 10.0 98 206-303 2-102 (102)
9 cd05504 Bromo_Acf1_like Bromod 99.9 6.6E-26 1.4E-30 206.5 11.4 103 202-306 10-112 (115)
10 cd05507 Bromo_brd8_like Bromod 99.9 9E-26 2E-30 202.1 11.1 101 203-305 2-102 (104)
11 cd05499 Bromo_BDF1_2_II Bromod 99.9 7.6E-26 1.6E-30 201.6 10.2 98 206-303 2-102 (102)
12 cd05500 Bromo_BDF1_2_I Bromodo 99.9 1.2E-25 2.7E-30 200.7 11.2 101 202-302 2-102 (103)
13 cd05502 Bromo_tif1_like Bromod 99.9 2.5E-25 5.5E-30 200.7 12.2 101 203-306 3-106 (109)
14 cd05501 Bromo_SP100C_like Brom 99.9 2.9E-25 6.3E-30 197.7 11.9 97 205-306 3-99 (102)
15 cd05510 Bromo_SPT7_like Bromod 99.9 3.2E-25 7E-30 201.1 11.0 103 202-306 5-109 (112)
16 cd05509 Bromo_gcn5_like Bromod 99.9 3.5E-25 7.5E-30 196.9 10.2 99 205-305 2-100 (101)
17 cd05508 Bromo_RACK7 Bromodomai 99.9 4.1E-25 8.9E-30 196.2 10.5 97 203-302 2-98 (99)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 6.8E-25 1.5E-29 197.4 9.5 99 205-305 2-106 (107)
19 cd05513 Bromo_brd7_like Bromod 99.9 1.7E-24 3.6E-29 192.0 9.7 92 205-298 2-93 (98)
20 cd05528 Bromo_AAA Bromodomain; 99.9 3.6E-24 7.8E-29 194.3 11.0 102 203-306 2-107 (112)
21 cd05512 Bromo_brd1_like Bromod 99.9 3.1E-24 6.7E-29 190.3 9.6 92 205-298 2-93 (98)
22 cd05511 Bromo_TFIID Bromodomai 99.9 5.7E-24 1.2E-28 192.9 10.6 102 207-310 3-104 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 1.4E-23 3E-28 187.6 9.4 97 205-303 1-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 1.9E-23 4.2E-28 187.4 9.5 97 206-304 2-104 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 3.9E-23 8.5E-28 187.8 10.1 101 205-307 3-109 (113)
26 cd05529 Bromo_WDR9_I_like Brom 99.9 1.8E-22 3.9E-27 187.3 12.4 104 200-304 20-126 (128)
27 smart00297 BROMO bromo domain. 99.9 1.7E-22 3.6E-27 179.9 10.8 102 202-305 5-106 (107)
28 cd05517 Bromo_polybromo_II Bro 99.9 9.4E-23 2E-27 182.4 9.0 94 206-301 2-101 (103)
29 cd05525 Bromo_ASH1 Bromodomain 99.9 1.5E-22 3.2E-27 182.1 10.0 96 205-302 3-104 (106)
30 cd05520 Bromo_polybromo_III Br 99.9 1.4E-22 3.1E-27 181.2 9.3 91 210-302 6-102 (103)
31 cd05518 Bromo_polybromo_IV Bro 99.9 1.4E-22 3E-27 181.3 9.2 94 207-302 3-102 (103)
32 cd05522 Bromo_Rsc1_2_II Bromod 99.8 3.3E-21 7.2E-26 172.7 9.4 94 207-302 4-103 (104)
33 cd04369 Bromodomain Bromodomai 99.8 3.2E-21 7E-26 166.6 9.0 96 206-303 2-99 (99)
34 PF00439 Bromodomain: Bromodom 99.8 3.3E-21 7.2E-26 164.3 8.5 84 209-294 1-84 (84)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 5.7E-21 1.2E-25 171.7 10.0 95 205-303 2-102 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 2.7E-20 6E-25 167.9 11.1 98 210-307 6-107 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.7 5.7E-18 1.2E-22 152.8 10.5 100 204-307 3-108 (110)
38 COG5076 Transcription factor i 99.7 3.3E-17 7.1E-22 176.9 9.5 106 203-310 141-252 (371)
39 KOG1245 Chromatin remodeling c 99.7 2.3E-17 5E-22 200.0 7.4 95 209-306 1306-1400(1404)
40 KOG1472 Histone acetyltransfer 99.4 1.7E-13 3.6E-18 155.8 5.8 101 204-306 606-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 4E-13 8.6E-18 122.6 4.2 81 204-284 3-90 (114)
42 KOG0955 PHD finger protein BR1 99.2 3.1E-11 6.6E-16 142.6 8.2 104 201-306 562-665 (1051)
43 cd05491 Bromo_TBP7_like Bromod 98.9 1.1E-09 2.4E-14 99.8 6.2 41 245-285 63-103 (119)
44 KOG0386 Chromatin remodeling c 98.9 9.2E-10 2E-14 127.5 7.0 100 207-308 1027-1132(1157)
45 KOG1827 Chromatin remodeling c 98.8 5.4E-09 1.2E-13 117.9 7.6 99 203-303 51-155 (629)
46 KOG0008 Transcription initiati 98.8 5.8E-09 1.3E-13 123.4 5.8 93 210-304 1388-1480(1563)
47 KOG0008 Transcription initiati 98.7 1.7E-08 3.7E-13 119.6 8.3 103 205-309 1262-1364(1563)
48 KOG1474 Transcription initiati 98.6 1.6E-08 3.5E-13 116.7 1.6 93 214-306 2-94 (640)
49 KOG1472 Histone acetyltransfer 98.5 1E-07 2.2E-12 109.2 5.6 76 203-287 292-367 (720)
50 KOG1828 IRF-2-binding protein 98.0 1.4E-06 3.1E-11 92.9 -0.1 92 207-300 22-113 (418)
51 KOG1828 IRF-2-binding protein 97.9 8.4E-06 1.8E-10 87.1 4.0 85 210-297 214-298 (418)
52 COG5076 Transcription factor i 96.5 0.00067 1.5E-08 73.9 0.4 88 217-306 276-363 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 95.3 0.034 7.3E-07 52.3 5.5 61 246-306 59-119 (131)
54 KOG0644 Uncharacterized conser 89.1 0.39 8.6E-06 56.6 4.2 60 243-302 1050-1109(1113)
55 KOG0732 AAA+-type ATPase conta 83.1 0.55 1.2E-05 57.3 1.4 64 222-285 533-601 (1080)
56 PF05110 AF-4: AF-4 proto-onco 80.6 4.3 9.4E-05 50.7 7.8 10 506-515 451-460 (1191)
57 PHA03308 transcriptional regul 78.9 1.5 3.2E-05 51.1 2.9 12 406-417 1193-1204(1463)
58 KOG3116 Predicted C3H1-type Zn 77.9 1.6 3.5E-05 41.8 2.4 17 499-515 138-154 (177)
59 KOG2140 Uncharacterized conser 77.3 1.9 4.1E-05 49.0 3.0 6 476-481 649-654 (739)
60 PHA03308 transcriptional regul 60.2 6.5 0.00014 46.1 2.7 7 16-22 506-512 (1463)
61 KOG0644 Uncharacterized conser 59.5 2.6 5.6E-05 50.1 -0.5 69 227-298 88-186 (1113)
62 KOG2130 Phosphatidylserine-spe 54.0 9.1 0.0002 41.2 2.4 11 261-271 158-168 (407)
63 KOG2140 Uncharacterized conser 53.3 8.8 0.00019 43.9 2.3 6 61-66 7-12 (739)
64 KOG1827 Chromatin remodeling c 53.2 2.2 4.7E-05 49.7 -2.5 75 223-299 214-288 (629)
65 PF05110 AF-4: AF-4 proto-onco 52.2 15 0.00032 46.3 4.2 18 507-524 446-463 (1191)
66 PF14372 DUF4413: Domain of un 49.8 47 0.001 29.6 6.0 51 258-308 3-53 (101)
67 KOG2130 Phosphatidylserine-spe 48.8 14 0.0003 39.9 2.7 6 298-303 163-168 (407)
68 PF07218 RAP1: Rhoptry-associa 31.2 1.2E+02 0.0027 35.2 6.8 28 397-424 36-63 (782)
69 TIGR02606 antidote_CC2985 puta 29.1 72 0.0016 26.7 3.6 27 250-276 12-38 (69)
70 PF07218 RAP1: Rhoptry-associa 24.9 1.3E+02 0.0029 34.9 5.7 15 292-306 5-19 (782)
71 PHA03309 transcriptional regul 23.0 1.2E+02 0.0025 37.1 4.9 9 73-81 1316-1324(2033)
72 PF11596 DUF3246: Protein of u 21.5 54 0.0012 33.8 1.7 6 456-461 172-177 (241)
73 PF11458 Mistic: Membrane-inte 21.4 3E+02 0.0066 23.8 5.8 57 359-424 3-59 (84)
74 KOG1869 Splicing coactivator S 21.3 97 0.0021 34.4 3.7 18 468-485 371-388 (425)
75 PF10872 DUF2740: Protein of u 21.0 88 0.0019 23.9 2.3 17 111-127 29-45 (48)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=3e-42 Score=392.21 Aligned_cols=377 Identities=33% Similarity=0.447 Sum_probs=253.2
Q ss_pred hhhhhhcccc-cCCCCCCCC-ccccccccccCCccccccccccCCCCcccCccceeeccCCCCHHHHHHHHHHHHHHHHH
Q 006949 42 YRHAVETMAE-SEGFGSSGR-VDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQ 119 (624)
Q Consensus 42 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~s~~~~~~~r~~~~~~~~~~~~f~v~~~~~~~s~~s~~e~~~L~~rl~~eLeq 119 (624)
+..+|.+++. +..+...+. |..--.+++....++..|......+...+.+...++++.+++..++++|+.||+.+|++
T Consensus 55 ~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (640)
T KOG1474|consen 55 CIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDKSSVGPKASKIPLDKDSSSQVRKLSERLKQELQQ 134 (640)
T ss_pred hhhhccccccchhcccCCccchhhccccchhhcccccccccccccCCcccccccccCcCCCCchhhhhhhhhcccccccc
Confidence 3667777775 554444444 33333578888888999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCcccCCCCCcCCCCCCCCCCCccCCCC-Cccc-cCC--CCCCCCCC-CCCCCCCCCCCCCCCCCC--
Q 006949 120 VRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRPLLESVGG-PSVV-LAP--KGKKRAPN-GRNGPQTKKGNSGRLEPK-- 192 (624)
Q Consensus 120 vR~l~~ki~~~~~~~vlsp~~~~~s~~~~~~~~~~~~~~~-~s~~-~~~--~~kkr~~~-~~~~~~~kr~~~~r~~p~-- 192 (624)
||.+.++++.....-++++....... .. ...+.. .... ... .+..+... +....+...+ .....+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 207 (640)
T KOG1474|consen 135 VRPLTKAVEFSPEPSVVSPVSPASQP-FK-----SKNGVKKVADTCVKSYKSKSEREPSPGQKREGTVAP-NSSRESGDS 207 (640)
T ss_pred CCcccccccccccccccCCCCCcccc-cc-----cccchhhhhccccccccccCcCCCCccccccccccC-ccccccccc
Confidence 99999999722211123331100000 00 000000 0000 000 00000000 0000000000 0000000
Q ss_pred ---CCCCCCCCchHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHH
Q 006949 193 ---KPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAA 269 (624)
Q Consensus 193 ---k~~~~~~~~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~ 269 (624)
............+++.|..||.+||+|+++|+|+.|||++++++||||+||||||||+|||+||.++.|.++.+|++
T Consensus 208 ~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~ 287 (640)
T KOG1474|consen 208 AAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAA 287 (640)
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHH
Confidence 22233445678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC---CCCCC-------CCC----------------CC
Q 006949 270 DVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLPVT---VDMTA-------VPS----------------RA 323 (624)
Q Consensus 270 DvrLIf~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~~~p~~---~~~e~-------~p~----------------~~ 323 (624)
||||||.||++||++|++||.||..|+++|+.+|+.+...+... ...+. .+. ..
T Consensus 288 DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (640)
T KOG1474|consen 288 DVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFESRESAS 367 (640)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccchhccccc
Confidence 99999999999999999999999999999999999865443210 00000 000 00
Q ss_pred c------hhhHH------------------hhhcCCCCCc-cC----CC----CCc----------cccccccccccCCC
Q 006949 324 D------DMIET------------------ETRMGMPPMK-KK----KV----SPK----------ETKIKAEPVRRVMT 360 (624)
Q Consensus 324 ~------~~~e~------------------~~~~~~pp~k-kr----K~----sp~----------~~~~~~e~~kr~MT 360 (624)
. ...++ ....+.+..+ .+ +. .+. .........++.||
T Consensus 368 ~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t 447 (640)
T KOG1474|consen 368 EPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEKNKKEKAANENKRDMT 447 (640)
T ss_pred CcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhhhcccccccccccccc
Confidence 0 00000 0000011000 00 00 000 00112334678899
Q ss_pred HHHHHHHHHHHHh-hcccChHHHHHHHhh--hc-CCCCCCCeEEEEcCCCC-------------HHHHHHHHHHHHHHHH
Q 006949 361 NEEKRILSTELEA-LLEELPESIIDFLKE--HS-AGETGEDELEIDIDALS-------------DDTLFALRKLLDDYLL 423 (624)
Q Consensus 361 ~eEK~kLs~~I~~-Lp~E~l~~Iv~IIkk--~~-~~~~~~dEIEIDId~L~-------------~~TL~eL~ryV~~~L~ 423 (624)
..|+..|...+.. +++.++..|++|++. .. .....+++|++|++.++ .+|+|++.++++.+-.
T Consensus 448 ~~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 527 (640)
T KOG1474|consen 448 APEKAKLKELLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVDGSQSREPSSNPLEIETIRETLKLSTEREL 527 (640)
T ss_pred ccccccchhhccCCCCCccccCcccccchhhhcccccccccchhhcccccccccccCCCcccchhhhhhccccchhhHHH
Confidence 9999999999999 488999999999933 44 67778999999999999 9999999999988844
Q ss_pred Hh
Q 006949 424 EK 425 (624)
Q Consensus 424 ek 425 (624)
..
T Consensus 528 ~~ 529 (640)
T KOG1474|consen 528 EL 529 (640)
T ss_pred HH
Confidence 33
No 2
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2e-27 Score=214.23 Aligned_cols=104 Identities=37% Similarity=0.580 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 006949 203 AMLMKQCENLLTRLMSH-QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~-~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (624)
.+|++.|..|+++|+++ +.+|+|..||++...++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999 99999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006949 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
|+++|.||.+|..|++.|++.++.+
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 3
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.1e-27 Score=217.48 Aligned_cols=106 Identities=38% Similarity=0.629 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 006949 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (624)
..|.+.|..||+.|++|+.+++|..|||+. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~--~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLL--KYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChh--hcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 679999999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHhhC
Q 006949 283 PP-QNDVHIMADTLRKYFEVRWKAIEKKL 310 (624)
Q Consensus 283 ~~-~S~V~~~A~~L~~~Fe~~~k~i~~~~ 310 (624)
++ ++.||.+|..|++.|+++|++|...+
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 99999999999999999999987544
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.5e-27 Score=213.22 Aligned_cols=103 Identities=40% Similarity=0.677 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCC
Q 006949 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (624)
Q Consensus 204 ~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (624)
++.-.+..||+.|++|+.+++|..|||+.+.++||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 44455578899999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 006949 284 PQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 284 ~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
++|.||.+|..|++.|+++++++
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999988753
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=9.2e-27 Score=206.08 Aligned_cols=95 Identities=32% Similarity=0.557 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCC
Q 006949 206 MKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (624)
Q Consensus 206 ~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~ 285 (624)
++.|..||+.|++++.+++|..||++. .+||||++|++||||+||++||+.+.|.++.+|.+||+|||.||++||++|
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChh--hcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999965 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 006949 286 NDVHIMADTLRKYFEVR 302 (624)
Q Consensus 286 S~V~~~A~~L~~~Fe~~ 302 (624)
+.||.+|..|++.|.++
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.7e-26 Score=204.40 Aligned_cols=99 Identities=66% Similarity=1.179 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 006949 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (624)
Q Consensus 205 l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (624)
+++.|..||+.|++++.+++|..||++...++|+||++|++||||+||++||+++.|.++.+|.+||+|||.||++||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 006949 285 QNDVHIMADTLRKYFEVRW 303 (624)
Q Consensus 285 ~S~V~~~A~~L~~~Fe~~~ 303 (624)
+|.+|.+|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.8e-26 Score=202.87 Aligned_cols=96 Identities=41% Similarity=0.766 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCC
Q 006949 206 MKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (624)
Q Consensus 206 ~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~ 285 (624)
+..|..||+.|++|+.+++|..||++. .+|+||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTK--LVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 006949 286 NDVHIMADTLRKYFEVRW 303 (624)
Q Consensus 286 S~V~~~A~~L~~~Fe~~~ 303 (624)
+.+|.+|..|+++|+.+|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 8
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.1e-26 Score=203.14 Aligned_cols=98 Identities=50% Similarity=0.901 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHcC---CCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 006949 206 MKQCENLLTRLMSH---QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (624)
Q Consensus 206 ~k~c~~IL~~L~~~---~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (624)
++.|.+||+.|+++ +.+++|..||++...++||||++|++||||+||++||..+.|.++.+|..||+|||+||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 68999999999999 889999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 006949 283 PPQNDVHIMADTLRKYFEVRW 303 (624)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~ 303 (624)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 9
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=6.6e-26 Score=206.51 Aligned_cols=103 Identities=36% Similarity=0.705 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 006949 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (624)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (624)
....+..|..||+.|++++.+++|..||++. .+||||++|++||||+||++||+.|.|.++.+|.+||+|||+||++|
T Consensus 10 ~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~--~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~y 87 (115)
T cd05504 10 GPLNLSALEQLLVEIVKHKDSWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLY 87 (115)
T ss_pred CHHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3667899999999999999999999999965 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006949 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
|++++.+|.+|..|+++|+++++.+
T Consensus 88 N~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 88 NPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876
No 10
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=9e-26 Score=202.11 Aligned_cols=101 Identities=33% Similarity=0.463 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 006949 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (624)
..|++.|..|++.|++|+.+++|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||+||++||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 468999999999999999999999999974 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 006949 283 PPQNDVHIMADTLRKYFEVRWKA 305 (624)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~k~ 305 (624)
++++.||.+|..|++.|...+..
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999877653
No 11
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=7.6e-26 Score=201.64 Aligned_cols=98 Identities=47% Similarity=0.898 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcC---CCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 006949 206 MKQCENLLTRLMSH---QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (624)
Q Consensus 206 ~k~c~~IL~~L~~~---~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (624)
++.|.+||+.|+++ +.+++|..|||+.+..+||||++|++||||++|++||+++.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 58999999999995 569999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 006949 283 PPQNDVHIMADTLRKYFEVRW 303 (624)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~ 303 (624)
++++.+|.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999886
No 12
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.2e-25 Score=200.72 Aligned_cols=101 Identities=38% Similarity=0.521 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 006949 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (624)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (624)
...+.+.|.+||+.|++++.+++|..|||+.+.++||||++|++||||+||++||.++.|.++.+|..||+|||+||+.|
T Consensus 2 t~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05500 2 TKHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTF 81 (103)
T ss_pred CHHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 006949 282 NPPQNDVHIMADTLRKYFEVR 302 (624)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~ 302 (624)
|+++|.++.+|..|++.|++.
T Consensus 82 N~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999975
No 13
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.5e-25 Score=200.67 Aligned_cols=101 Identities=37% Similarity=0.695 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHHhhhhh
Q 006949 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS---GQYSDPLAFAADVRLTFSNAM 279 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~---~~Y~s~~eF~~DvrLIf~NA~ 279 (624)
...+++|.+||.+|++|+.+++|..||++ .+|+||++|++||||+||++||+. +.|.++++|.+||+|||+||+
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~ 79 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999997 699999999999999999999998 699999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006949 280 TYNPPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 280 ~YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
.||++++.++.+|..|++.|++.|+++
T Consensus 80 ~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 80 KFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
No 14
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.9e-25 Score=197.72 Aligned_cols=97 Identities=29% Similarity=0.397 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 006949 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (624)
Q Consensus 205 l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (624)
.++.|+.||..|++++.+++|..+ |. .+||||++|++||||+||++||.+|+|.++.+|.+||+|||.||++||++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 456799999999999999999763 33 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 006949 285 QNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 285 ~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
+ .++.+|..|++.|+++|+.+
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999875
No 15
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.2e-25 Score=201.06 Aligned_cols=103 Identities=29% Similarity=0.450 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHHcC-CCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 006949 202 NAMLMKQCENLLTRLMSH-QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (624)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~-~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (624)
..++...|..||+.|++| +.+++|..||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~ 82 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSKR--EAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLL 82 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCChh--hcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 367899999999999999 8999999999976 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-HHHHHHHHHHHHHHHHHHHH
Q 006949 281 YNPPQN-DVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 281 YN~~~S-~V~~~A~~L~~~Fe~~~k~i 306 (624)
||++++ .++.+|..|++.|+..+..|
T Consensus 83 yN~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 83 YNSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 999876 67899999999999988765
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.5e-25 Score=196.88 Aligned_cols=99 Identities=38% Similarity=0.652 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 006949 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (624)
Q Consensus 205 l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (624)
+..+|..||+.|++|+.+++|..||++. .+|+||++|++||||+||++||..+.|.++.+|.+||+|||+||++||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKE--EAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChh--hcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999976 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 006949 285 QNDVHIMADTLRKYFEVRWKA 305 (624)
Q Consensus 285 ~S~V~~~A~~L~~~Fe~~~k~ 305 (624)
++.+|.+|..|++.|++.+++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998875
No 17
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.1e-25 Score=196.24 Aligned_cols=97 Identities=29% Similarity=0.393 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 006949 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (624)
.++...+..+++.|+ |+.+|+|..||++. .+||||++|++||||+||++||++|.|.++++|.+||+|||.||++||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLE--QFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChh--hCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 467788899999999 99999999999975 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 006949 283 PPQNDVHIMADTLRKYFEVR 302 (624)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~ 302 (624)
+++|.++.+|..|.+.|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998864
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=6.8e-25 Score=197.43 Aligned_cols=99 Identities=22% Similarity=0.323 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhh
Q 006949 205 LMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (624)
Q Consensus 205 l~k~c~~IL~~L~~~~~------a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (624)
+.+.|..||+.|+++.. +++|.+||+.. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~--~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcc--cCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999876 89999997754 89999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 006949 279 MTYNPPQNDVHIMADTLRKYFEVRWKA 305 (624)
Q Consensus 279 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~ 305 (624)
++||++||.||.+|..|+++|++.+++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998875
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.7e-24 Score=192.01 Aligned_cols=92 Identities=35% Similarity=0.475 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 006949 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (624)
Q Consensus 205 l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (624)
+.+.|..||+.|++++.+++|..||+.. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDF--IAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCcc--ccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5788999999999999999999999965 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006949 285 QNDVHIMADTLRKY 298 (624)
Q Consensus 285 ~S~V~~~A~~L~~~ 298 (624)
++.+|.+|..|...
T Consensus 80 ~s~~~~~A~~L~~~ 93 (98)
T cd05513 80 DTIYYKAAKKLLHS 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999654
No 20
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.91 E-value=3.6e-24 Score=194.26 Aligned_cols=102 Identities=34% Similarity=0.468 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 006949 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (624)
.++...|..|+++|++|+.+++|..||++. .+||||++|++||||+||++||++++|.++.+|.+||+|||.||+.||
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 79 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYN 79 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHC
Confidence 467888999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CC----CCHHHHHHHHHHHHHHHHHHHH
Q 006949 283 PP----QNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 283 ~~----~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
++ |+.|+.+|..|++.|.+++..+
T Consensus 80 ~~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 80 PDRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 99 4799999999999999988764
No 21
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.1e-24 Score=190.31 Aligned_cols=92 Identities=32% Similarity=0.485 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 006949 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (624)
Q Consensus 205 l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (624)
+...|+.+|++|+.++.+++|..||++. .+||||++|++||||+||++||.++.|.++++|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5678899999999999999999999976 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006949 285 QNDVHIMADTLRKY 298 (624)
Q Consensus 285 ~S~V~~~A~~L~~~ 298 (624)
++.+|.+|..|++.
T Consensus 80 ~s~~~~~A~~l~~~ 93 (98)
T cd05512 80 DTIFYRAAVRLRDQ 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.7e-24 Score=192.93 Aligned_cols=102 Identities=31% Similarity=0.516 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCC
Q 006949 207 KQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (624)
Q Consensus 207 k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S 286 (624)
..++.|+.+|++++.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|.+||+|||+||+.||++++
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 80 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKK--KVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDS 80 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChh--hcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35688999999999999999999976 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Q 006949 287 DVHIMADTLRKYFEVRWKAIEKKL 310 (624)
Q Consensus 287 ~V~~~A~~L~~~Fe~~~k~i~~~~ 310 (624)
.++.+|..|++.|+..+.+++.++
T Consensus 81 ~i~~~A~~l~~~~~~~~~~~~~~~ 104 (112)
T cd05511 81 VYTKKAKEMLELAEELLAEREEKL 104 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999987664
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.4e-23 Score=187.60 Aligned_cols=97 Identities=28% Similarity=0.412 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhh
Q 006949 205 LMKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (624)
Q Consensus 205 l~k~c~~IL~~L~~~------~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (624)
+++.|..|++.|+++ +.+++|..|++ +..+||||++|++||||+||++||+.|.|.++.+|.+||+|||.||
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~--~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na 78 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPS--KKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANA 78 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCC--CCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 368899999999955 45899999977 4589999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHH
Q 006949 279 MTYNPPQNDVHIMADTLRKYFEVRW 303 (624)
Q Consensus 279 ~~YN~~~S~V~~~A~~L~~~Fe~~~ 303 (624)
++||++++.+|.+|..|++.|+++|
T Consensus 79 ~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 79 RTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=1.9e-23 Score=187.36 Aligned_cols=97 Identities=28% Similarity=0.414 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcC------CCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhh
Q 006949 206 MKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (624)
Q Consensus 206 ~k~c~~IL~~L~~~------~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (624)
+++|..|++.|..+ +.+++|..||+. .++||||++|++||||+||++||.++.|.++.+|.+||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~--~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSK--SEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCc--ccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999998876 457999999764 4899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHH
Q 006949 280 TYNPPQNDVHIMADTLRKYFEVRWK 304 (624)
Q Consensus 280 ~YN~~~S~V~~~A~~L~~~Fe~~~k 304 (624)
+||+++|.+|.+|..|+++|.+..+
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988653
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=3.9e-23 Score=187.78 Aligned_cols=101 Identities=25% Similarity=0.388 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhh
Q 006949 205 LMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (624)
Q Consensus 205 l~k~c~~IL~~L~~~~------~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (624)
..+.|..|++.|++++ .+.+|..+++ +..+||||++|++||||+||++||.++.|.++.+|.+||+|||+||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~--~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPK--RRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCC--cccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999764 3568999855 6699999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006949 279 MTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (624)
Q Consensus 279 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (624)
++||+++|.+|.+|..|+++|++.++++.
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988764
No 26
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.8e-22 Score=187.26 Aligned_cols=104 Identities=28% Similarity=0.405 Sum_probs=98.0
Q ss_pred CchHHHHHHHHHHHHHHH---cCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 006949 200 SSNAMLMKQCENLLTRLM---SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (624)
Q Consensus 200 ~~~~~l~k~c~~IL~~L~---~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (624)
.....+...|..++.+|+ +++.+++|..||++.. .+|+||++|++||||+||++||.++.|.++++|.+||+|||.
T Consensus 20 ~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~ 98 (128)
T cd05529 20 HIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILS 98 (128)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999 8999999999999664 799999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 006949 277 NAMTYNPPQNDVHIMADTLRKYFEVRWK 304 (624)
Q Consensus 277 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k 304 (624)
||++||++++.++.+|..|++.|...+.
T Consensus 99 Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 99 NAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998765
No 27
>smart00297 BROMO bromo domain.
Probab=99.88 E-value=1.7e-22 Score=179.92 Aligned_cols=102 Identities=44% Similarity=0.724 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 006949 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (624)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (624)
...+...|..|++.+.+++.+++|..||+.. .+|+||.+|++||||++|++||+++.|.++.+|.+||++||.||+.|
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~--~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRK--EAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChh--hccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999998866 69999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 006949 282 NPPQNDVHIMADTLRKYFEVRWKA 305 (624)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~ 305 (624)
|++++.+|.+|..|++.|+..|++
T Consensus 83 n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 83 NGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 28
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=9.4e-23 Score=182.39 Aligned_cols=94 Identities=34% Similarity=0.517 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCC------CCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhh
Q 006949 206 MKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (624)
Q Consensus 206 ~k~c~~IL~~L~~~~------~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (624)
++.|..|++.|+++. .+++|..+++ +..+||||++|++||||+||++||..+.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~--~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPS--KVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCC--CCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999874 4799999966 55999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHH
Q 006949 280 TYNPPQNDVHIMADTLRKYFEV 301 (624)
Q Consensus 280 ~YN~~~S~V~~~A~~L~~~Fe~ 301 (624)
+||++||.||.+|..|++.|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 29
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.5e-22 Score=182.06 Aligned_cols=96 Identities=27% Similarity=0.403 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhh
Q 006949 205 LMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (624)
Q Consensus 205 l~k~c~~IL~~L~~~~------~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (624)
+.+.|..|++.|..++ .+++|.++++ +..+||||++|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~--k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPS--KKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCC--cccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 5567888888888764 4799999955 6699999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHH
Q 006949 279 MTYNPPQNDVHIMADTLRKYFEVR 302 (624)
Q Consensus 279 ~~YN~~~S~V~~~A~~L~~~Fe~~ 302 (624)
+.||++||.+|.+|..|++.|++.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999864
No 30
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.4e-22 Score=181.24 Aligned_cols=91 Identities=29% Similarity=0.471 Sum_probs=82.0
Q ss_pred HHHHHHHHcC------CCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCC
Q 006949 210 ENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (624)
Q Consensus 210 ~~IL~~L~~~------~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (624)
..|++.|+.+ ..+++|.+||+ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||++||+
T Consensus 6 ~~l~~~i~~~~~~~g~~~s~pF~~~p~--~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 6 WQLYDTIRNARNNQGQLLAEPFLKLPS--KRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred HHHHHHHHhhcCCCCCCccHhhhcCCC--cccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4455555544 46899999977 458999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 006949 284 PQNDVHIMADTLRKYFEVR 302 (624)
Q Consensus 284 ~~S~V~~~A~~L~~~Fe~~ 302 (624)
+|+.+|.+|..|+++|+++
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.4e-22 Score=181.34 Aligned_cols=94 Identities=28% Similarity=0.432 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcC------CCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 006949 207 KQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (624)
Q Consensus 207 k~c~~IL~~L~~~------~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (624)
++|..|++.|.++ ..+.+|..+|+ +..+||||++|++||||+||++||.++.|.++.+|.+||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~--~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPS--KKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCC--cccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5566777777664 56889999876 448999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 006949 281 YNPPQNDVHIMADTLRKYFEVR 302 (624)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~ 302 (624)
||++||.||.+|..|+++|+++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999864
No 32
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=3.3e-21 Score=172.68 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHc------CCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 006949 207 KQCENLLTRLMS------HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (624)
Q Consensus 207 k~c~~IL~~L~~------~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (624)
.++..|++.|.+ ++.+++|..+++.. .+||||++|++||||+||++||..+.|.++.+|..||+|||.||+.
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~--~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKA--REPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCcc--ccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 344555555554 35789999997754 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 006949 281 YNPPQNDVHIMADTLRKYFEVR 302 (624)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~ 302 (624)
||++++.+|.+|..|++.|+..
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999863
No 33
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.84 E-value=3.2e-21 Score=166.64 Aligned_cols=96 Identities=45% Similarity=0.624 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcC--CCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCC
Q 006949 206 MKQCENLLTRLMSH--QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (624)
Q Consensus 206 ~k~c~~IL~~L~~~--~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (624)
...|..|++.|+.+ +.+++|..||++. .+|+||.+|++||||.+|++||..+.|.++.+|.+||+|||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~--~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPK--EAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChh--cCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46899999999999 9999999999864 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 006949 284 PQNDVHIMADTLRKYFEVRW 303 (624)
Q Consensus 284 ~~S~V~~~A~~L~~~Fe~~~ 303 (624)
+++.++.+|..|+..|++.|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
No 34
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.84 E-value=3.3e-21 Score=164.34 Aligned_cols=84 Identities=44% Similarity=0.799 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHH
Q 006949 209 CENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDV 288 (624)
Q Consensus 209 c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V 288 (624)
|..||+.|++|+.+++|..||++. .+|+|+++|++||||.+|++||++|.|.++.+|.+||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~--~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPK--EYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTT--TSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChh--hCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 899999999999999999998655 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 006949 289 HIMADT 294 (624)
Q Consensus 289 ~~~A~~ 294 (624)
|.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=5.7e-21 Score=171.74 Aligned_cols=95 Identities=26% Similarity=0.372 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhh
Q 006949 205 LMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (624)
Q Consensus 205 l~k~c~~IL~~L~~~~~------a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (624)
+.++|..|++.|++.+. +.+|..+++ +..+||||++|++||||+||++||.. |.++.+|.+||+|||+||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~--~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPL--RKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCc--cccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 56789999999998744 568987754 66899999999999999999999998 999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHH
Q 006949 279 MTYNPPQNDVHIMADTLRKYFEVRW 303 (624)
Q Consensus 279 ~~YN~~~S~V~~~A~~L~~~Fe~~~ 303 (624)
++||++|+.+|.+|..|+++|..++
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999765
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=2.7e-20 Score=167.91 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=87.3
Q ss_pred HHHHHHHHc-CCCCCCCcCCCC---ccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCC
Q 006949 210 ENLLTRLMS-HQFGWVFNTPVD---VMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (624)
Q Consensus 210 ~~IL~~L~~-~~~a~~F~~PVd---~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~ 285 (624)
.-++..+.+ .+..++|..||. +.+.++|+||++|++||||+||++||++|+|+++++|.+||+|||+||+.||+++
T Consensus 6 ~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~ 85 (109)
T cd05492 6 KFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGAD 85 (109)
T ss_pred HHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 345555555 466799999997 4445699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 006949 286 NDVHIMADTLRKYFEVRWKAIE 307 (624)
Q Consensus 286 S~V~~~A~~L~~~Fe~~~k~i~ 307 (624)
|.+|.+|..|.+.....+.+|.
T Consensus 86 s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 86 SEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998888875
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.75 E-value=5.7e-18 Score=152.80 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Q 006949 204 MLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (624)
Q Consensus 204 ~l~k~c~~IL~~L~~~~------~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (624)
.+++.+..|+..+++|. .+.+|.+.+. ..|+||.+|+.||||++|++||.+|.|.++++|.+||.|||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~----~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE----LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC----cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 46788899999999985 3778888733 4688899999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006949 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (624)
Q Consensus 278 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (624)
|++||.+||.||.+|..|+++|.....++.
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887764
No 38
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.70 E-value=3.3e-17 Score=176.91 Aligned_cols=106 Identities=30% Similarity=0.468 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHcC------CCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 006949 203 AMLMKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~------~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (624)
..+.+.|..|+..+... ...++|..+|+ +..+|+||.||+.||||++|++||..+.|+++++|..|+.|||+
T Consensus 141 ~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~--k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~ 218 (371)
T COG5076 141 ELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPS--KREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFD 218 (371)
T ss_pred hhHHHHHHHHHHHHHHhhcccccccccccccCCc--cccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34445555555444432 45788888755 77999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 006949 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (624)
Q Consensus 277 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~~~ 310 (624)
||.+||.+++.||.+|..|++.|..++..+....
T Consensus 219 N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~ 252 (371)
T COG5076 219 NCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEM 252 (371)
T ss_pred hhhhccCCCcchhhhhHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999998775443
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.69 E-value=2.3e-17 Score=199.98 Aligned_cols=95 Identities=40% Similarity=0.850 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHH
Q 006949 209 CENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDV 288 (624)
Q Consensus 209 c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V 288 (624)
|..||..|+.|+.+|||++||++. .+||||+|||+||||.||+.|+..|.|.++.+|..||.|||.||.+||.. |.|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~--~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPK--EVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChh--hcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 999999999999999999999977 89999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006949 289 HIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 289 ~~~A~~L~~~Fe~~~k~i 306 (624)
+.....|.++|..+|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999988753
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.41 E-value=1.7e-13 Score=155.80 Aligned_cols=101 Identities=35% Similarity=0.625 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCC
Q 006949 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (624)
Q Consensus 204 ~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (624)
.+......||.+|.+|..+|||.+||+.. ++||||.+|++||||.||+.+|..+.|.....|++|+..||.||+.||+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~--e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKK--EVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccc--cCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 45667889999999999999999999965 9999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 006949 284 PQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 284 ~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
.++..|+.|..|...|...+...
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred ccchheecccchhhhhcchhhhh
Confidence 99999999999999999887765
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.36 E-value=4e-13 Score=122.57 Aligned_cols=81 Identities=23% Similarity=0.195 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCC-------CCCCHHHHHHHHHHHhh
Q 006949 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSG-------QYSDPLAFAADVRLTFS 276 (624)
Q Consensus 204 ~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~-------~Y~s~~eF~~DvrLIf~ 276 (624)
+....|..+|..++.++.+|+|..|||+.+.++||||++||+||||+||+++|..+ .|.--..+.+++..+|.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 45677888888888889999999999998889999999999999999999999997 45555567777888888
Q ss_pred hhhhcCCC
Q 006949 277 NAMTYNPP 284 (624)
Q Consensus 277 NA~~YN~~ 284 (624)
||..||..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 88777763
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.18 E-value=3.1e-11 Score=142.62 Aligned_cols=104 Identities=31% Similarity=0.434 Sum_probs=97.0
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 006949 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (624)
..-...+.+..++..|...+...+|..|||+. ++|||+++|++||||.|++.++..+.|.++++|.+|+.||..||+.
T Consensus 562 ~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~--e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~ 639 (1051)
T KOG0955|consen 562 GLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPS--ELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCME 639 (1051)
T ss_pred cCchHHHHHHHHHHHhhcccccCceeeccChh--hcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHH
Confidence 34567889999999999999999999999977 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006949 281 YNPPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
||..+...|.+|..|++.....+...
T Consensus 640 yn~~dtv~~r~av~~~e~~~~~~~~a 665 (1051)
T KOG0955|consen 640 YNAKDTVYYRAAVRLRELIKKDFRNA 665 (1051)
T ss_pred hhccCeehHhhhHHHHhhhhhHHHhc
Confidence 99999999999999999877766654
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.95 E-value=1.1e-09 Score=99.81 Aligned_cols=41 Identities=29% Similarity=0.449 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCC
Q 006949 245 HPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (624)
Q Consensus 245 ~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~ 285 (624)
.||||+||++||.+|.|.++.+|.+||+|||.||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999999999999999999999999999999863
No 44
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.95 E-value=9.2e-10 Score=127.55 Aligned_cols=100 Identities=28% Similarity=0.394 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCC------CCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 006949 207 KQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (624)
Q Consensus 207 k~c~~IL~~L~~~~------~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (624)
+.|..|+....++. .+..|... |.+..+||||.||++||++..|+++|..+.|.+..+...||.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~--~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKL--PSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccC--cccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 77888888877654 46788887 66779999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 006949 281 YNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (624)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i~~ 308 (624)
||.+||.||.+|..|+.+|......|..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999999888864
No 45
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.83 E-value=5.4e-09 Score=117.89 Aligned_cols=99 Identities=27% Similarity=0.404 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHcCC------CCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 006949 203 AMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~------~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (624)
..++.++..||..+..+. ....|.+. +.++..|+||.+|..||.|..|++|+..++|.+++.|..|+.|||.
T Consensus 51 ~~~~~~f~~il~~~~~~~d~~gk~~~d~fekl--p~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 51 PPLIPKFKTILASLLDLKDDEGKQLFDKFEKL--PSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTE 128 (629)
T ss_pred hHHHHHHHHHHHHHHhhccccCcccchhHhhc--cccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 455667777777777663 36678887 4577999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 006949 277 NAMTYNPPQNDVHIMADTLRKYFEVRW 303 (624)
Q Consensus 277 NA~~YN~~~S~V~~~A~~L~~~Fe~~~ 303 (624)
||+.||.+++.+|.++..|+..|....
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 999999999999999999999998754
No 46
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.77 E-value=5.8e-09 Score=123.43 Aligned_cols=93 Identities=28% Similarity=0.494 Sum_probs=79.5
Q ss_pred HHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHH
Q 006949 210 ENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVH 289 (624)
Q Consensus 210 ~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~ 289 (624)
..|+.+++.-+.+|+|++||+.. .+|+||..|++||||.+|.+++..++|.+..+|.+||++|+.||..||+..+...
T Consensus 1388 d~~vs~~~~ipes~~f~~~v~~k--~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~ 1465 (1563)
T KOG0008|consen 1388 DNIVSQMKEIPESWPFHEPVNKK--RVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYT 1465 (1563)
T ss_pred hhHHHHHHhcchhcccccccchh--hchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcccccc
Confidence 44555555567899999999976 7999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHH
Q 006949 290 IMADTLRKYFEVRWK 304 (624)
Q Consensus 290 ~~A~~L~~~Fe~~~k 304 (624)
..|+.+-.+....+.
T Consensus 1466 ~k~~k~~ev~~~~~~ 1480 (1563)
T KOG0008|consen 1466 KKARKIGEVGLANLL 1480 (1563)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666555544433
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.74 E-value=1.7e-08 Score=119.63 Aligned_cols=103 Identities=27% Similarity=0.387 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 006949 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (624)
Q Consensus 205 l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (624)
+.-....|++++...++..+|..||+.. .++|||.||+.||||.++|+.+....|.+-++|..|+.||++|..+||++
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k--~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~ 1339 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAK--EVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGP 1339 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchh--hccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCc
Confidence 4455688999999999999999999966 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhh
Q 006949 285 QNDVHIMADTLRKYFEVRWKAIEKK 309 (624)
Q Consensus 285 ~S~V~~~A~~L~~~Fe~~~k~i~~~ 309 (624)
-+.+...+..+....-..|.+-+.+
T Consensus 1340 ~~~~t~~~q~mls~~~~~~~ekedk 1364 (1563)
T KOG0008|consen 1340 LASLTRQQQSMLSLCFEKLKEKEDK 1364 (1563)
T ss_pred hHHHHHHHHHHHHHHHHhhchhHHH
Confidence 9999999988888776666654443
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.57 E-value=1.6e-08 Score=116.65 Aligned_cols=93 Identities=33% Similarity=0.653 Sum_probs=86.3
Q ss_pred HHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHH
Q 006949 214 TRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMAD 293 (624)
Q Consensus 214 ~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~ 293 (624)
+.+.+|.++|+|..||+.+.+.+|+||.+|++|||++||++++.++.|.+..+..+|+..+|.||..||..+..|+.++.
T Consensus 2 ~~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 2 KEARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred cccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccc
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006949 294 TLRKYFEVRWKAI 306 (624)
Q Consensus 294 ~L~~~Fe~~~k~i 306 (624)
.++..|......+
T Consensus 82 ~~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 82 SLEKLFPKKLRSM 94 (640)
T ss_pred cchhhcccccccc
Confidence 9999987655443
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.50 E-value=1e-07 Score=109.25 Aligned_cols=76 Identities=30% Similarity=0.488 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 006949 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (624)
..+...|. .+.++++|.++|+.. ..|+||+||+-||||.|+.+|+..+.|.+.++|..|+.+||.||.+||
T Consensus 292 ~~~~~~~~-------~~~~s~~~~~kvs~~--~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n 362 (720)
T KOG1472|consen 292 EELYEAAE-------RTEHSTPFLEKVSKE--DAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYN 362 (720)
T ss_pred HHHHHHhc-------ccccccccccCCChh--hCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhc
Confidence 44555555 489999999999965 899999999999999999999999999999999999999999999999
Q ss_pred CCCCH
Q 006949 283 PPQND 287 (624)
Q Consensus 283 ~~~S~ 287 (624)
.+-+.
T Consensus 363 ~ee~~ 367 (720)
T KOG1472|consen 363 SEESH 367 (720)
T ss_pred cccch
Confidence 86443
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.98 E-value=1.4e-06 Score=92.87 Aligned_cols=92 Identities=26% Similarity=0.250 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCC
Q 006949 207 KQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (624)
Q Consensus 207 k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S 286 (624)
...+.++.+|.+...-..|.-||.+. ..|+|-+||+.|||+.|++.|++.++|.++.+|..|.+||..||..||...+
T Consensus 22 ~~~ehhlrkl~sKdp~q~fafplt~~--map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~T 99 (418)
T KOG1828|consen 22 GDAEHHLRKLPSKDPKQKFAFPLTDK--MAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPT 99 (418)
T ss_pred hhHHHHHHhccccChhhhhccccchh--hccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCc
Confidence 44456677777777777888888766 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 006949 287 DVHIMADTLRKYFE 300 (624)
Q Consensus 287 ~V~~~A~~L~~~Fe 300 (624)
.++..|..|..+-.
T Consensus 100 v~~~aaKrL~~v~~ 113 (418)
T KOG1828|consen 100 VPIVAAKRLCPVRL 113 (418)
T ss_pred cccccccccchhhc
Confidence 99999998876543
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.90 E-value=8.4e-06 Score=87.11 Aligned_cols=85 Identities=19% Similarity=0.113 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHH
Q 006949 210 ENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVH 289 (624)
Q Consensus 210 ~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~ 289 (624)
.....+|........|+.++-.. .+|.|..+|++|+|++|++.|...+.|.| .+|..|+.||+.||++||.+...+|
T Consensus 214 ~~q~~kl~~~~p~~~lnyg~tas--~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yy 290 (418)
T KOG1828|consen 214 TLQEDKLNRVDPVAYLNYGPTAS--FAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYY 290 (418)
T ss_pred HHHHHHhcccCchhhhcccchhh--hcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHH
Confidence 34445566667788899886644 89999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHH
Q 006949 290 IMADTLRK 297 (624)
Q Consensus 290 ~~A~~L~~ 297 (624)
.+|..+..
T Consensus 291 elank~lh 298 (418)
T KOG1828|consen 291 ELANKQLH 298 (418)
T ss_pred HHHHhhhh
Confidence 99987766
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.55 E-value=0.00067 Score=73.88 Aligned_cols=88 Identities=31% Similarity=0.516 Sum_probs=79.6
Q ss_pred HcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHH
Q 006949 217 MSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLR 296 (624)
Q Consensus 217 ~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~ 296 (624)
..+..+|+|..++... ..|+|+++|..+|++.+.+.++..+.|....+|..|..++|+||..||+.....+..+..+.
T Consensus 276 ~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (371)
T COG5076 276 QAHVGAWPFLRPVSDE--EVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLE 353 (371)
T ss_pred ccccccccccccCCcc--cccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchh
Confidence 4456689999997755 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006949 297 KYFEVRWKAI 306 (624)
Q Consensus 297 ~~Fe~~~k~i 306 (624)
.+|......+
T Consensus 354 ~~~~~~~~~~ 363 (371)
T COG5076 354 DFVIKKTRLI 363 (371)
T ss_pred hhHhhhhhhh
Confidence 9888766543
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.27 E-value=0.034 Score=52.29 Aligned_cols=61 Identities=20% Similarity=0.387 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006949 246 PMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 246 PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
|.||.-|++||..|.|+++.+|.+||-.|+.-++.-.+....+-+.-..+.-+|-+.+..+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~v 119 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESV 119 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHh
Confidence 8999999999999999999999999999998777655543333333333344454444433
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=89.10 E-value=0.39 Score=56.61 Aligned_cols=60 Identities=25% Similarity=0.407 Sum_probs=52.6
Q ss_pred cCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 006949 243 IKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVR 302 (624)
Q Consensus 243 Ik~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~~~Fe~~ 302 (624)
---|..|..|+.+|++++|++.+.|..||..|..||.+|..-+..+-..+..|...|...
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 456899999999999999999999999999999999999998887777777777766543
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=83.11 E-value=0.55 Score=57.28 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=55.6
Q ss_pred CCCCcCCCCcccc---CCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHH--HHHHHhhhhhhcCCCC
Q 006949 222 GWVFNTPVDVMKL---NIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAA--DVRLTFSNAMTYNPPQ 285 (624)
Q Consensus 222 a~~F~~PVd~~k~---~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~--DvrLIf~NA~~YN~~~ 285 (624)
...|..|+.+... .+++|-.+|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 5678888764322 15699999999999999999999999999999999 9999999999999964
No 56
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=80.57 E-value=4.3 Score=50.74 Aligned_cols=10 Identities=80% Similarity=0.733 Sum_probs=4.6
Q ss_pred CCCCCCCCCC
Q 006949 506 SSDSDSGSSS 515 (624)
Q Consensus 506 SS~SdS~sss 515 (624)
+|||+|+|||
T Consensus 451 ~SDSESESSS 460 (1191)
T PF05110_consen 451 SSDSESESSS 460 (1191)
T ss_pred cccccccccc
Confidence 3444554443
No 57
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=78.90 E-value=1.5 Score=51.09 Aligned_cols=12 Identities=42% Similarity=0.465 Sum_probs=6.6
Q ss_pred CCHHHHHHHHHH
Q 006949 406 LSDDTLFALRKL 417 (624)
Q Consensus 406 L~~~TL~eL~ry 417 (624)
|..-||+.|+..
T Consensus 1193 lthvtlrrlrdv 1204 (1463)
T PHA03308 1193 LTHVTLRRLRDV 1204 (1463)
T ss_pred hhhhhHHHHHHH
Confidence 445566666553
No 58
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=77.92 E-value=1.6 Score=41.83 Aligned_cols=17 Identities=76% Similarity=0.620 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCCCCCC
Q 006949 499 SSESGSSSSDSDSGSSS 515 (624)
Q Consensus 499 SS~SgSSSS~SdS~sss 515 (624)
++.+++|+++|||++++
T Consensus 138 ss~sSsSssdSdS~s~s 154 (177)
T KOG3116|consen 138 SSYSSSSSSDSDSESAS 154 (177)
T ss_pred cccccCCCCcccccccc
Confidence 33333333444433333
No 59
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=77.28 E-value=1.9 Score=49.01 Aligned_cols=6 Identities=33% Similarity=0.506 Sum_probs=2.4
Q ss_pred CCchhh
Q 006949 476 IPPVAI 481 (624)
Q Consensus 476 ~~Pv~i 481 (624)
.|-|+.
T Consensus 649 ~pk~~~ 654 (739)
T KOG2140|consen 649 MPKVED 654 (739)
T ss_pred cchhhh
Confidence 333443
No 60
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=60.24 E-value=6.5 Score=46.13 Aligned_cols=7 Identities=0% Similarity=0.273 Sum_probs=3.2
Q ss_pred hHHHHHh
Q 006949 16 KKCLTSQ 22 (624)
Q Consensus 16 ~~~~~~~ 22 (624)
+|.|-.|
T Consensus 506 RRAYApM 512 (1463)
T PHA03308 506 RRAFVPF 512 (1463)
T ss_pred HHHhhhh
Confidence 4444444
No 61
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=59.51 E-value=2.6 Score=50.12 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=53.8
Q ss_pred CCCCccccCCCCcccccCCCCCHHHHHHHHhCCCC--------------C----------CHHH------HHHHHHHHhh
Q 006949 227 TPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQY--------------S----------DPLA------FAADVRLTFS 276 (624)
Q Consensus 227 ~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y--------------~----------s~~e------F~~DvrLIf~ 276 (624)
-++| +..+|.|..+...|.+|+|++..|.+..| . ++.+ ..+-+.+|-.
T Consensus 88 ~~~d--~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 88 PMLD--KPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred cCcC--CCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 3455 33789999999999999999999999887 2 3333 6677888999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHH
Q 006949 277 NAMTYNPPQNDVHIMADTLRKY 298 (624)
Q Consensus 277 NA~~YN~~~S~V~~~A~~L~~~ 298 (624)
||..++.||+ +|+-++.+.++
T Consensus 166 at~~~akPgt-mvqkmk~ikrL 186 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMKNIKRL 186 (1113)
T ss_pred ceeeecCcHH-HHHHHHHHHHH
Confidence 9999999999 66655555444
No 62
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=54.03 E-value=9.1 Score=41.19 Aligned_cols=11 Identities=45% Similarity=0.697 Sum_probs=4.3
Q ss_pred CCCHHHHHHHH
Q 006949 261 YSDPLAFAADV 271 (624)
Q Consensus 261 Y~s~~eF~~Dv 271 (624)
|.=+.=|.+|+
T Consensus 158 Y~VPk~F~dDl 168 (407)
T KOG2130|consen 158 YSVPKYFRDDL 168 (407)
T ss_pred cCcchhhhHHH
Confidence 33333344333
No 63
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=53.31 E-value=8.8 Score=43.90 Aligned_cols=6 Identities=33% Similarity=0.202 Sum_probs=2.3
Q ss_pred cccccc
Q 006949 61 VDTEMT 66 (624)
Q Consensus 61 ~~~~~~ 66 (624)
-|+|-+
T Consensus 7 ~dkps~ 12 (739)
T KOG2140|consen 7 PDKPST 12 (739)
T ss_pred CCCCCC
Confidence 333333
No 64
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=53.21 E-value=2.2 Score=49.68 Aligned_cols=75 Identities=8% Similarity=-0.058 Sum_probs=66.5
Q ss_pred CCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHH
Q 006949 223 WVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299 (624)
Q Consensus 223 ~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~~~F 299 (624)
..|..-++ ...+|+||.+++-||.+..+.+++..+.|.....|..|+.+.|.|+..|+.....++..+..|.+.+
T Consensus 214 er~w~~~d--g~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 214 ERLWKLPD--GEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred cccccCcc--cccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 44555544 4479999999999999999999999999999999999999999999999999999999998887643
No 65
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=52.22 E-value=15 Score=46.27 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCCccccc
Q 006949 507 SDSDSGSSSGSEPDAAKA 524 (624)
Q Consensus 507 S~SdS~sss~s~s~a~~~ 524 (624)
|+|||+|+|.++|.+.++
T Consensus 446 SESsS~SDSESESSSSDS 463 (1191)
T PF05110_consen 446 SESSSSSDSESESSSSDS 463 (1191)
T ss_pred CCccCccccccccccccc
Confidence 444444444444444443
No 66
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=49.79 E-value=47 Score=29.61 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 006949 258 SGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (624)
Q Consensus 258 ~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~ 308 (624)
...|.|..-|...+..|-.....++..+..+..+|..|...|++.|+++..
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~ 53 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNL 53 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 346889999999998888888888877889999999999999999986543
No 67
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=48.78 E-value=14 Score=39.90 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=2.4
Q ss_pred HHHHHH
Q 006949 298 YFEVRW 303 (624)
Q Consensus 298 ~Fe~~~ 303 (624)
+|++-|
T Consensus 163 ~F~dDl 168 (407)
T KOG2130|consen 163 YFRDDL 168 (407)
T ss_pred hhhHHH
Confidence 344433
No 68
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=31.18 E-value=1.2e+02 Score=35.17 Aligned_cols=28 Identities=11% Similarity=0.219 Sum_probs=14.4
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 006949 397 DELEIDIDALSDDTLFALRKLLDDYLLE 424 (624)
Q Consensus 397 dEIEIDId~L~~~TL~eL~ryV~~~L~e 424 (624)
+.=|+++|++.-=+-..=..|+..|-.+
T Consensus 36 e~eefn~dd~n~wm~ldd~nflntwtkn 63 (782)
T PF07218_consen 36 EAEEFNVDDINSWMKLDDANFLNTWTKN 63 (782)
T ss_pred cccccCcccchhcccccHHHHHHHHhhc
Confidence 3345666666544433334566655443
No 69
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=29.11 E-value=72 Score=26.69 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 006949 250 GTIKCKITSGQYSDPLAFAADVRLTFS 276 (624)
Q Consensus 250 ~tIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (624)
..|+..+..|.|.+..++.+|.-.+|.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999877763
No 70
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=24.91 E-value=1.3e+02 Score=34.92 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 006949 292 ADTLRKYFEVRWKAI 306 (624)
Q Consensus 292 A~~L~~~Fe~~~k~i 306 (624)
|-.|.-+|-..|+.+
T Consensus 5 ~~sllvlf~alyqnv 19 (782)
T PF07218_consen 5 ASSLLVLFYALYQNV 19 (782)
T ss_pred HHHHHHHHHHHHHhh
Confidence 334455555555544
No 71
>PHA03309 transcriptional regulator ICP4; Provisional
Probab=23.00 E-value=1.2e+02 Score=37.06 Aligned_cols=9 Identities=33% Similarity=0.848 Sum_probs=5.5
Q ss_pred ccccccccc
Q 006949 73 APKRKCISL 81 (624)
Q Consensus 73 ~~~r~~~~~ 81 (624)
.|.|-||-.
T Consensus 1316 rpsrdc~PP 1324 (2033)
T PHA03309 1316 RPSRDCFPP 1324 (2033)
T ss_pred CcccccCCc
Confidence 366777743
No 72
>PF11596 DUF3246: Protein of unknown function (DUF3246); InterPro: IPR021642 This is a small family of fungal proteins one of whose members, A3LUS4 from SWISSPROT from Pichia stipitis is described as being an extremely serine rich protein-mucin-like protein.
Probab=21.54 E-value=54 Score=33.79 Aligned_cols=6 Identities=33% Similarity=0.412 Sum_probs=3.0
Q ss_pred CCCCCc
Q 006949 456 NDLVDE 461 (624)
Q Consensus 456 ~e~~eE 461 (624)
.|..||
T Consensus 172 ~e~CdE 177 (241)
T PF11596_consen 172 GEDCDE 177 (241)
T ss_pred ccccce
Confidence 344555
No 73
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=21.45 E-value=3e+02 Score=23.83 Aligned_cols=57 Identities=30% Similarity=0.361 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHhhcccChHHHHHHHhhhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 006949 359 MTNEEKRILSTELEALLEELPESIIDFLKEHSAGETGEDELEIDIDALSDDTLFALRKLLDDYLLE 424 (624)
Q Consensus 359 MT~eEK~kLs~~I~~Lp~E~l~~Iv~IIkk~~~~~~~~dEIEIDId~L~~~TL~eL~ryV~~~L~e 424 (624)
+|..||.+|+.+|..+. |-+..+|++-.+. ..|+-= =.|.++|-.-|++-...|-++
T Consensus 3 Vt~~EkeQLS~AID~mn-EGLD~fI~lYNeS-----e~DepL---iql~detael~~~A~~~yG~e 59 (84)
T PF11458_consen 3 VTDQEKEQLSTAIDRMN-EGLDTFIQLYNES-----EKDEPL---IQLEDETAELIRQAREKYGQE 59 (84)
T ss_pred CchHHHHHHHHHHHHHH-hhHHHHHHHHccc-----ccccch---hhcchhHHHHHHHHHHHHhHH
Confidence 58899999999999984 5677777766432 223322 345677777777776666444
No 74
>KOG1869 consensus Splicing coactivator SRm160/300, subunit SRm300 [RNA processing and modification]
Probab=21.34 E-value=97 Score=34.39 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=12.0
Q ss_pred CCCCCCCCCCchhhhhhc
Q 006949 468 GNDPPVTDIPPVAIEKDA 485 (624)
Q Consensus 468 g~~~p~s~~~Pv~iekd~ 485 (624)
|+.+.-.+..|+..+++.
T Consensus 371 ~d~~~~~~~~p~r~e~~~ 388 (425)
T KOG1869|consen 371 EDYIAKTNLAPIRVEKSA 388 (425)
T ss_pred CCcccccccccccccccc
Confidence 444555677788888865
No 75
>PF10872 DUF2740: Protein of unknown function (DUF2740); InterPro: IPR022626 This entry is represented by Bacteriophage P22, Orf48. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function has a highly conserved sequence. They are found in Enterobacteria and Enterobacteria phages.
Probab=20.99 E-value=88 Score=23.86 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006949 111 LKLKTDLEQVRVLQKKV 127 (624)
Q Consensus 111 ~rl~~eLeqvR~l~~ki 127 (624)
-|+++|||.|...+++-
T Consensus 29 grfraelekvkl~~k~k 45 (48)
T PF10872_consen 29 GRFRAELEKVKLMQKRK 45 (48)
T ss_pred chHHHHHHHHHHHHHhh
Confidence 47899999999988763
Done!