Query 006950
Match_columns 624
No_of_seqs 387 out of 1521
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oss_A HUNK1 protein, bromodom 99.9 5.3E-28 1.8E-32 222.5 11.7 105 202-306 19-123 (127)
2 3g0l_A Hwalp4, bromodomain adj 99.9 8.4E-28 2.9E-32 217.8 12.8 103 203-307 12-114 (117)
3 2ouo_A HUNK1 protein, bromodom 99.9 3.7E-28 1.3E-32 224.3 9.8 106 201-306 19-127 (130)
4 3d7c_A General control of amin 99.9 1.5E-27 5E-32 214.7 11.3 104 201-306 4-107 (112)
5 3fkm_X Signaling protein; brom 99.9 1.5E-27 5.2E-32 228.9 12.2 110 198-307 15-124 (166)
6 4alg_A Bromodomain-containing 99.9 1.2E-27 4.1E-32 227.0 11.1 108 200-307 28-135 (154)
7 3p1f_A CREB-binding protein; s 99.9 3.2E-27 1.1E-31 214.5 12.0 109 201-309 8-117 (119)
8 3jvl_A Bromodomain-containing 99.9 8.5E-28 2.9E-32 218.7 7.8 106 201-306 6-114 (120)
9 2d9e_A Peregrin; four-helix bu 99.9 3.9E-27 1.3E-31 214.9 12.1 106 203-310 6-111 (121)
10 2dat_A Possible global transcr 99.9 5E-27 1.7E-31 214.7 11.6 104 201-306 10-119 (123)
11 3q2e_A Bromodomain and WD repe 99.9 6E-27 2E-31 214.1 11.5 109 201-311 7-116 (123)
12 3mb3_A PH-interacting protein; 99.9 4.3E-27 1.5E-31 218.3 10.7 107 201-309 18-125 (135)
13 1e6i_A Transcriptional activat 99.9 4.8E-27 1.6E-31 214.3 10.5 101 205-307 14-114 (121)
14 2grc_A Probable global transcr 99.9 8.7E-27 3E-31 214.8 11.9 107 201-309 8-121 (129)
15 3nxb_A CAT eye syndrome critic 99.9 5.3E-27 1.8E-31 212.2 10.1 101 203-305 15-115 (116)
16 2i7k_A Bromodomain-containing 99.9 1.3E-26 4.6E-31 210.3 12.7 104 201-306 5-108 (117)
17 2yyn_A Transcription intermedi 99.9 1.3E-26 4.4E-31 215.3 12.0 104 201-307 17-122 (135)
18 3mb4_A Protein polybromo-1; PB 99.9 1E-26 3.5E-31 212.8 9.3 103 203-307 14-122 (124)
19 3rcw_A Bromodomain-containing 99.9 3.7E-26 1.2E-30 212.0 12.8 108 201-310 10-117 (135)
20 3ljw_A Protein polybromo-1; al 99.9 2.6E-26 9E-31 209.0 11.5 109 201-311 5-119 (120)
21 3hme_A Bromodomain-containing 99.9 5.3E-26 1.8E-30 208.0 11.9 102 203-306 12-113 (123)
22 3iu5_A Protein polybromo-1; PB 99.9 3.4E-26 1.2E-30 207.0 10.5 103 204-308 5-113 (116)
23 3mqm_A Probable histone-lysine 99.9 5.4E-26 1.8E-30 208.5 11.2 107 202-310 7-119 (126)
24 3k2j_A Protein polybromo-1; PB 99.9 1.2E-25 4E-30 207.7 11.8 107 201-309 14-126 (130)
25 3uv4_A Second bromodomain of h 99.9 4.7E-25 1.6E-29 210.0 10.2 107 202-310 27-134 (158)
26 2ri7_A Nucleosome-remodeling f 99.9 4.2E-25 1.4E-29 212.6 8.9 104 201-306 69-172 (174)
27 3o36_A Transcription intermedi 99.9 2.7E-24 9.1E-29 209.1 12.9 104 200-306 77-182 (184)
28 3tlp_A Protein polybromo-1; PB 99.9 2.2E-24 7.5E-29 203.5 10.6 101 205-307 25-132 (150)
29 3dai_A ATPase family AAA domai 99.9 4.5E-24 1.5E-28 196.9 11.8 101 202-304 8-112 (130)
30 2ro1_A Transcription intermedi 99.9 9.7E-24 3.3E-28 206.4 10.0 101 200-307 72-177 (189)
31 2dkw_A Hypothetical protein KI 99.9 3.6E-23 1.2E-27 191.3 11.8 98 200-304 8-109 (131)
32 3uv5_A Transcription initiatio 99.9 2.2E-23 7.4E-28 213.7 11.3 107 202-310 12-118 (265)
33 3u5n_A E3 ubiquitin-protein li 99.9 3.3E-23 1.1E-27 205.1 11.6 104 200-306 77-200 (207)
34 3aad_A Transcription initiatio 99.9 4.1E-23 1.4E-27 214.5 8.7 105 202-308 45-149 (292)
35 3uv5_A Transcription initiatio 99.9 1.5E-22 5.1E-27 207.5 11.1 106 203-310 135-241 (265)
36 3aad_A Transcription initiatio 99.9 8.2E-22 2.8E-26 204.7 11.0 101 208-310 173-274 (292)
37 2r0y_A Chromatin structure-rem 99.8 2.8E-21 9.5E-26 202.4 8.3 86 218-305 177-262 (311)
38 2r10_A Chromatin structure-rem 99.8 4.4E-21 1.5E-25 204.7 9.0 85 219-305 228-312 (361)
39 2r10_A Chromatin structure-rem 99.8 1E-19 3.5E-24 194.1 10.5 100 204-307 78-180 (361)
40 2r0y_A Chromatin structure-rem 99.8 1.7E-19 5.7E-24 188.9 7.1 101 203-307 27-130 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 7.9E-18 2.7E-22 157.5 12.9 101 203-309 6-112 (147)
42 2jns_A Bromodomain-containing 99.6 1.8E-16 6.2E-21 137.4 2.6 75 351-425 10-86 (90)
43 3lqh_A Histone-lysine N-methyl 99.5 6E-14 2.1E-18 136.4 8.3 97 202-311 73-169 (183)
44 2lm0_A AF4/FMR2 family member 94.5 0.046 1.6E-06 49.2 5.6 61 359-419 59-120 (125)
45 3h8k_B Autocrine motility fact 52.7 12 0.0004 25.3 3.0 27 592-620 2-28 (28)
46 1uty_A Non-structural protein 25.2 14 0.00049 35.2 -0.2 21 106-126 154-174 (187)
No 1
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=5.3e-28 Score=222.47 Aligned_cols=105 Identities=37% Similarity=0.688 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 006950 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (624)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (624)
..++...|..||+.|++|+.+|+|..|||+.++++||||++|++||||+||++||.+|.|.++.+|.+||+|||+||++|
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006950 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
|+++|.||.+|..|++.|++.|+++
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998764
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=8.4e-28 Score=217.78 Aligned_cols=103 Identities=39% Similarity=0.697 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 006950 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (624)
...++.|..||+.|++|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++++|.+||+|||.||++||
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFN 89 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCcCChh--hcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 357899999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 006950 283 PPQNDVHIMADTLRKYFEVRWKAIE 307 (624)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (624)
+++|.+|.+|..|++.|++.|+++-
T Consensus 90 ~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 90 EDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
No 3
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=3.7e-28 Score=224.34 Aligned_cols=106 Identities=42% Similarity=0.783 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHHHHHHcCCC---CCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Q 006950 201 SNAMLMKQCENLLTRLMSHQF---GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~---a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (624)
.....++.|..||+.|+.+++ +|+|..|||+..+++||||+||++||||+||++||.+|.|.++.+|.+||+|||.|
T Consensus 19 ~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 19 KVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 346678999999999999875 89999999999889999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006950 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 278 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
|++||+++|.||.+|..|++.|+++|++|
T Consensus 99 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 99 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999865
No 4
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.94 E-value=1.5e-27 Score=214.68 Aligned_cols=104 Identities=33% Similarity=0.570 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 006950 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (624)
....|...|..||+.|++|+.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 4 ~~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 81 (112)
T 3d7c_A 4 DPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCRE 81 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCchhhcCCCCcc--cccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999976 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006950 281 YNPPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
||+++|.+|.+|..|++.|++.|+++
T Consensus 82 yN~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 82 YNPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999875
No 5
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=1.5e-27 Score=228.89 Aligned_cols=110 Identities=33% Similarity=0.525 Sum_probs=99.9
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Q 006950 198 ASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (624)
Q Consensus 198 ~~~~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (624)
..+....|++.|..||..|++++.+++|..|||+.++.+||||+||++||||+||++||.++.|.++.+|.+||+|||.|
T Consensus 15 ~~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (166)
T 3fkm_X 15 YFQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDN 94 (166)
T ss_dssp --CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006950 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (624)
Q Consensus 278 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (624)
|++||++++.||.+|..|+++|++.|+++.
T Consensus 95 a~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 95 CSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999998753
No 6
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=1.2e-27 Score=226.98 Aligned_cols=108 Identities=35% Similarity=0.629 Sum_probs=102.9
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhh
Q 006950 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (624)
Q Consensus 200 ~~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (624)
....++...|..||+.|++++.+|+|..|||+.++++||||+||++||||+||++||+++.|.++.+|.+||+|||.||+
T Consensus 28 r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 28 RVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp CCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006950 280 TYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (624)
Q Consensus 280 ~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (624)
+||++++.||.+|..|+++|++.|++|.
T Consensus 108 ~YN~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 108 IYNKPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999998653
No 7
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.94 E-value=3.2e-27 Score=214.54 Aligned_cols=109 Identities=35% Similarity=0.542 Sum_probs=103.9
Q ss_pred chHHHHHHHHHHHHHHHc-CCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhh
Q 006950 201 SNAMLMKQCENLLTRLMS-HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~-~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (624)
...++++.|..+|..|++ ++.+|+|.+|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+|||+||+
T Consensus 8 ~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 87 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999998 6799999999999888899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 006950 280 TYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (624)
Q Consensus 280 ~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~~ 309 (624)
+||+++|.||.+|..|++.|++.|+.+...
T Consensus 88 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 88 LYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988654
No 8
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.94 E-value=8.5e-28 Score=218.67 Aligned_cols=106 Identities=42% Similarity=0.784 Sum_probs=101.2
Q ss_pred chHHHHHHHHHHHHHHHcCCC---CCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Q 006950 201 SNAMLMKQCENLLTRLMSHQF---GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~---a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (624)
...++++.|..||..|+.++. +|+|..|||+..+++||||++|++||||+||++||.++.|.++.+|.+||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 446789999999999999987 99999999999778999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006950 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 278 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
|++||+++|.||.+|..|++.|++.|+++
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 114 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 114 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999865
No 9
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=3.9e-27 Score=214.94 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 006950 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (624)
.++...|..||+.|++++.+++|..||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||++||
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCcc--ccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457799999999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 006950 283 PPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (624)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~k~i~~~~ 310 (624)
+++|.+|.+|..|++.|+..|.++...+
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~~ 111 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQA 111 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654
No 10
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=5e-27 Score=214.71 Aligned_cols=104 Identities=22% Similarity=0.336 Sum_probs=98.0
Q ss_pred chHHHHHHHHHHHHHHHcCC------CCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006950 201 SNAMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLT 274 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~------~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLI 274 (624)
....+.+.|..||+.|++++ .+++|.+||+.. .+||||++|++||||+||++||+++.|.++.+|.+||+||
T Consensus 10 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li 87 (123)
T 2dat_A 10 NPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLL 87 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTT--TSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 34789999999999999986 589999999854 8999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006950 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 275 f~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
|+||++||++++.||.+|..|+++|++.|+++
T Consensus 88 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 88 CHNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999988753
No 11
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.94 E-value=6e-27 Score=214.12 Aligned_cols=109 Identities=34% Similarity=0.631 Sum_probs=101.8
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 006950 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (624)
....|+++|..||+.|++++.+++|..||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||++
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 84 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCEDSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKA 84 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999976 8999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 006950 281 YNPP-QNDVHIMADTLRKYFEVRWKAIEKKLP 311 (624)
Q Consensus 281 YN~~-~S~V~~~A~~L~~~Fe~~~k~i~~~~p 311 (624)
||++ ++.||.+|..|++.|+++|+++...+.
T Consensus 85 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 85 YTPNKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp HSCCTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 999999999999999999999876654
No 12
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.94 E-value=4.3e-27 Score=218.26 Aligned_cols=107 Identities=32% Similarity=0.600 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 006950 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (624)
....|++.|..||+.|++++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 95 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLL--EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKA 95 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCChhhcCCCChh--hCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999975 8999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCHHHHHHHHHHHHHHHHHHHHHhh
Q 006950 281 YNPP-QNDVHIMADTLRKYFEVRWKAIEKK 309 (624)
Q Consensus 281 YN~~-~S~V~~~A~~L~~~Fe~~~k~i~~~ 309 (624)
||++ ++.||.+|..|+++|++.|+.+...
T Consensus 96 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 125 (135)
T 3mb3_A 96 YTPSKRSRIYSMSLRLSAFFEEHISSVLSD 125 (135)
T ss_dssp HSCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 9999999999999999999987544
No 13
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.94 E-value=4.8e-27 Score=214.32 Aligned_cols=101 Identities=36% Similarity=0.598 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 006950 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (624)
Q Consensus 205 l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (624)
+.+.|..||+.|++|+.+|+|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||+||++||++
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChh--hCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4689999999999999999999999965 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 006950 285 QNDVHIMADTLRKYFEVRWKAIE 307 (624)
Q Consensus 285 ~S~V~~~A~~L~~~Fe~~~k~i~ 307 (624)
+|.+|.+|..|++.|++.|+++.
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999998764
No 14
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.94 E-value=8.7e-27 Score=214.85 Aligned_cols=107 Identities=23% Similarity=0.345 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHHHHHcCC-------CCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006950 201 SNAMLMKQCENLLTRLMSHQ-------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRL 273 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~-------~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrL 273 (624)
....+.+.|..||+.|++++ .+++|..||+. ..+||||++|++||||+||++||.+|.|.++.+|.+||+|
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 85 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR--KELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVML 85 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCT--TTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCc--ccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 45789999999999999885 58999999885 4899999999999999999999999999999999999999
Q ss_pred HhhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 006950 274 TFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (624)
Q Consensus 274 If~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~~ 309 (624)
||+||++||+++|.||.+|..|++.|++.|++|...
T Consensus 86 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 86 LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999998754
No 15
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.94 E-value=5.3e-27 Score=212.19 Aligned_cols=101 Identities=27% Similarity=0.495 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 006950 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (624)
.++.+.|..||+.|++++.+++|..||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||++||
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDES--YAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChh--hccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 458999999999999999999999999977 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 006950 283 PPQNDVHIMADTLRKYFEVRWKA 305 (624)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~k~ 305 (624)
+++|.||.+|..|++.|++.|.+
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998863
No 16
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=210.30 Aligned_cols=104 Identities=27% Similarity=0.340 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 006950 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (624)
...++.+.|..||+.|++++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 5 ~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~--~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~ 82 (117)
T 2i7k_A 5 EQTPLQEALNQLMRQLQRKDPSAFFSFPVTDF--IAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMI 82 (117)
T ss_dssp THHHHHHHHHHHHHHHHTSSGGGTSSSCCCTT--TSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcccHHhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999964 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006950 281 YNPPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
||+++|.+|.+|..|++.|++.|...
T Consensus 83 yN~~~s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 83 YNKPETIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp TSCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 17
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=215.34 Aligned_cols=104 Identities=38% Similarity=0.678 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHHhhhh
Q 006950 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS--GQYSDPLAFAADVRLTFSNA 278 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~--~~Y~s~~eF~~DvrLIf~NA 278 (624)
.....++.|..||..|++|+.+|+|..||+. .+||||++|++||||+||++||.+ +.|.++.+|.+||+|||+||
T Consensus 17 m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na 93 (135)
T 2yyn_A 17 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNC 93 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHH
Confidence 4566889999999999999999999999986 599999999999999999999998 59999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006950 279 MTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (624)
Q Consensus 279 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (624)
++||+++|.||.+|..|+++|+++|+++.
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 122 (135)
T 2yyn_A 94 AEFNEPDSEVANAGIKLENYFEELLKNLY 122 (135)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999874
No 18
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.93 E-value=1e-26 Score=212.83 Aligned_cols=103 Identities=23% Similarity=0.406 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHc------CCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 006950 203 AMLMKQCENLLTRLMS------HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~------~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (624)
..+.+.|..||+.|++ ++.+++|..||+.. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 91 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRS--ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFN 91 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCcc--ccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999998 45579999998855 899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006950 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (624)
Q Consensus 277 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (624)
||++||+++|.||.+|..|+++|++.|++++
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 92 NACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999875
No 19
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.93 E-value=3.7e-26 Score=212.02 Aligned_cols=108 Identities=26% Similarity=0.416 Sum_probs=102.3
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 006950 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (624)
....+...|..||+.|++|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||+||++
T Consensus 10 ~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 87 (135)
T 3rcw_A 10 RLTPLTVLLRSVLDQLQDKDPARIFAQPVSLK--EVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMK 87 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTCTTCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCcchhhcCCCChh--hcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34569999999999999999999999999976 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 006950 281 YNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (624)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i~~~~ 310 (624)
||+++|.+|.+|..|++.|++.|+.+...+
T Consensus 88 yN~~~s~~~~~A~~L~~~~~~~~~~~~~~~ 117 (135)
T 3rcw_A 88 YNARDTVFYRAAVRLRDQGGVVLRQARREV 117 (135)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876543
No 20
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.93 E-value=2.6e-26 Score=208.98 Aligned_cols=109 Identities=33% Similarity=0.474 Sum_probs=102.3
Q ss_pred chHHHHHHHHHHHHHHHcCCC------CCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006950 201 SNAMLMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLT 274 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~------a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLI 274 (624)
....|.+.|..|++.|++++. +++|..||+.. .+||||++|++||||+||++||.++.|.++.+|.+||+||
T Consensus 5 ~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li 82 (120)
T 3ljw_A 5 SPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKV--QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLL 82 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcc--cCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 357899999999999999876 99999998854 8999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 006950 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLP 311 (624)
Q Consensus 275 f~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~~~p 311 (624)
|.||++||+++|.||.+|..|++.|++.|++|+...+
T Consensus 83 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~~~ 119 (120)
T 3ljw_A 83 AKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEM 119 (120)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999999999986543
No 21
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.93 E-value=5.3e-26 Score=207.97 Aligned_cols=102 Identities=31% Similarity=0.395 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcC
Q 006950 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (624)
..+...|..||+.|++++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDA--IAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYN 89 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChh--hccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 006950 283 PPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
++++.+|.+|..|++.|++.|.+.
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 90 RPDTVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 22
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.93 E-value=3.4e-26 Score=206.98 Aligned_cols=103 Identities=24% Similarity=0.368 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Q 006950 204 MLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (624)
Q Consensus 204 ~l~k~c~~IL~~L~~~~------~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (624)
.+++.|..|++.|++++ .+++|..||+. ..+||||++|++||||+||++||+++.|.++.+|.+||+|||+|
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~--~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKR--RNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCG--GGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCc--ccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999984 49999999884 48999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 006950 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (624)
Q Consensus 278 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~ 308 (624)
|++||+++|.||.+|..|++.|++.|+++..
T Consensus 83 a~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999864
No 23
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.93 E-value=5.4e-26 Score=208.54 Aligned_cols=107 Identities=24% Similarity=0.254 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHcCCC------CCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 006950 202 NAMLMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275 (624)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~------a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf 275 (624)
...+.+.|..|++.|+++.. +|+|..||+.. .+||||++|++||||+||++||.++.|.++.+|.+||+|||
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 84 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK--KNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVF 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGG--GCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46788999999999999754 99999999865 89999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 006950 276 SNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (624)
Q Consensus 276 ~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~~~ 310 (624)
.||++||+++|.+|.+|..|++.|++.|+++...+
T Consensus 85 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l 119 (126)
T 3mqm_A 85 RNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQI 119 (126)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887654
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=207.67 Aligned_cols=107 Identities=23% Similarity=0.348 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHHHHHHcCCC------CCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006950 201 SNAMLMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLT 274 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~------a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLI 274 (624)
....+..+|..|++.|.++.. +++|.+||+.. .+||||++|++||||+||++||.++.|.++.+|.+||+||
T Consensus 14 ~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~--~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Li 91 (130)
T 3k2j_A 14 GTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKK--KYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLM 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChh--hCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 457899999999999998754 99999998854 9999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 006950 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (624)
Q Consensus 275 f~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~~ 309 (624)
|.||++||+++|.||.+|..|++.|++.|+++...
T Consensus 92 f~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 92 FENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998754
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.91 E-value=4.7e-25 Score=210.05 Aligned_cols=107 Identities=28% Similarity=0.505 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHH-HHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 006950 202 NAMLMKQCENLLTR-LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (624)
Q Consensus 202 ~~~l~k~c~~IL~~-L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (624)
...+...+..|+.. |+.++.+|+|..||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||++
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 104 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVK 104 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChh--hcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34455555555544 66789999999999966 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 006950 281 YNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (624)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i~~~~ 310 (624)
||++++.||.+|..|++.|+..|+++...+
T Consensus 105 yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l 134 (158)
T 3uv4_A 105 YNGPESQYTKTAQEIVNVCYQTLTEYDEHL 134 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887654
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.91 E-value=4.2e-25 Score=212.57 Aligned_cols=104 Identities=31% Similarity=0.547 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhh
Q 006950 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (624)
Q Consensus 201 ~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (624)
.....++.|..||+.|++++.+++|..||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||+||++
T Consensus 69 l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 146 (174)
T 2ri7_A 69 LTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRY 146 (174)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcc--cCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999976 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006950 281 YNPPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
||++++.+|.+|..|+++|+++|+++
T Consensus 147 yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 147 YNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998754
No 27
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.91 E-value=2.7e-24 Score=209.06 Aligned_cols=104 Identities=38% Similarity=0.687 Sum_probs=98.9
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHHhhh
Q 006950 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS--GQYSDPLAFAADVRLTFSN 277 (624)
Q Consensus 200 ~~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~--~~Y~s~~eF~~DvrLIf~N 277 (624)
.....+++.|..||..|+.++.+++|..||+. .+||||+||++||||+||++||++ +.|.++.+|.+||+|||+|
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~N 153 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 153 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhcccccc---CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999984 499999999999999999999998 7999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006950 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 278 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
|++||++++.||.+|..|+++|++.|+++
T Consensus 154 a~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 154 CAEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876
No 28
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=203.46 Aligned_cols=101 Identities=25% Similarity=0.376 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHcCCC-------CCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Q 006950 205 LMKQCENLLTRLMSHQF-------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (624)
Q Consensus 205 l~k~c~~IL~~L~~~~~-------a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (624)
...+|..|++.|+++.. +++|..||+. ..+||||++|++||||+||++||+++.|.++.+|.+||+|||.|
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSK--KDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCT--TTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCch--hhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 46788888888887654 8999999885 48999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006950 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (624)
Q Consensus 278 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (624)
|++||++++.||.+|..|+++|++.|+++.
T Consensus 103 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 132 (150)
T 3tlp_A 103 ARHYNEEGSQVYNDAHILEKLLKEKRKELG 132 (150)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999875
No 29
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.90 E-value=4.5e-24 Score=196.93 Aligned_cols=101 Identities=35% Similarity=0.411 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 006950 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (624)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (624)
...+...|..+++.|+.++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 8 l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (130)
T 3dai_A 8 FRELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEY 85 (130)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999977 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHHH
Q 006950 282 NPPQNDV----HIMADTLRKYFEVRWK 304 (624)
Q Consensus 282 N~~~S~V----~~~A~~L~~~Fe~~~k 304 (624)
|++++++ +.+|..|++.|...++
T Consensus 86 N~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 86 NPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999876 7888888888887775
No 30
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.89 E-value=9.7e-24 Score=206.43 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=94.6
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccC--CCCCHHHHHHHHhCC---CCCCHHHHHHHHHHH
Q 006950 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIK--HPMDLGTIKCKITSG---QYSDPLAFAADVRLT 274 (624)
Q Consensus 200 ~~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk--~PMDL~tIkkKL~~~---~Y~s~~eF~~DvrLI 274 (624)
......++.|..||..|+.|+.+|+|++||+ |+||+||+ +||||+||++||+++ .|.++++|.+||+||
T Consensus 72 ~m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Li 145 (189)
T 2ro1_A 72 KLSPANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRM 145 (189)
T ss_dssp SSCHHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHH
Confidence 3456678899999999999999999999998 67999998 899999999999999 999999999999999
Q ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006950 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (624)
Q Consensus 275 f~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (624)
|+||++|| +++.+|.+|..|+++|+++|+++.
T Consensus 146 f~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~ 177 (189)
T 2ro1_A 146 FKQFNKLT-EDKADVQSIIGLQRFFETRMNEAF 177 (189)
T ss_dssp HHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 589999999999999999999874
No 31
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=3.6e-23 Score=191.30 Aligned_cols=98 Identities=31% Similarity=0.429 Sum_probs=91.7
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhh
Q 006950 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (624)
Q Consensus 200 ~~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (624)
....++...|..||+.|++++.+++|..| +||||+||++||||+||++||.++.|.++.+|.+||+|||+||+
T Consensus 8 ~~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~ 80 (131)
T 2dkw_A 8 NTLRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNAL 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 35578999999999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred hcCCCCCH----HHHHHHHHHHHHHHHHH
Q 006950 280 TYNPPQND----VHIMADTLRKYFEVRWK 304 (624)
Q Consensus 280 ~YN~~~S~----V~~~A~~L~~~Fe~~~k 304 (624)
+||+++|+ ||.+|..|++.|...++
T Consensus 81 ~yN~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 81 EYNPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp HSCCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999995 57899999999887764
No 32
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.89 E-value=2.2e-23 Score=213.71 Aligned_cols=107 Identities=24% Similarity=0.452 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 006950 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (624)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (624)
...|...|..||..|++++.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||+||++|
T Consensus 12 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 89 (265)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhhCCCChh--hcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhc
Confidence 4588999999999999999999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 006950 282 NPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (624)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i~~~~ 310 (624)
|+++|.||.+|..|++.|++.|+++..++
T Consensus 90 N~~~s~i~~~A~~l~~~~~~~~~~~~~~~ 118 (265)
T 3uv5_A 90 NGPKHSLTQISQSMLDLCDEKLKEKEDKL 118 (265)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999876543
No 33
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.89 E-value=3.3e-23 Score=205.11 Aligned_cols=104 Identities=36% Similarity=0.637 Sum_probs=99.0
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHHhh
Q 006950 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS---GQYSDPLAFAADVRLTFS 276 (624)
Q Consensus 200 ~~~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~---~~Y~s~~eF~~DvrLIf~ 276 (624)
.....+++.|..||..|++++.+++|..||+. .+||||+||++||||+||++||++ +.|.++.+|.+||+|||+
T Consensus 77 ~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~ 153 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFK 153 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHH
Confidence 35578899999999999999999999999985 599999999999999999999997 799999999999999999
Q ss_pred hhhhcCC-----------------CCCHHHHHHHHHHHHHHHHHHHH
Q 006950 277 NAMTYNP-----------------PQNDVHIMADTLRKYFEVRWKAI 306 (624)
Q Consensus 277 NA~~YN~-----------------~~S~V~~~A~~L~~~Fe~~~k~i 306 (624)
||++||+ +++.|+.+|..|+.+|+++|+++
T Consensus 154 Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~ 200 (207)
T 3u5n_A 154 NCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEI 200 (207)
T ss_dssp HHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999999999999999999987
No 34
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.88 E-value=4.1e-23 Score=214.53 Aligned_cols=105 Identities=23% Similarity=0.438 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 006950 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (624)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (624)
...+...|..||+.|+.++.+|+|..||++. .+||||+||++||||+||++||+++.|.++.+|.+||+|||+||++|
T Consensus 45 ~~~l~~~~~~il~~l~~~~~a~~F~~pV~~~--~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~y 122 (292)
T 3aad_A 45 MVTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122 (292)
T ss_dssp HHHHHHHHHHHHHHHSSSTTCGGGSSSCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcchhhcCCCCch--hcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 006950 282 NPPQNDVHIMADTLRKYFEVRWKAIEK 308 (624)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i~~ 308 (624)
|++++.||.+|..|++.|++.|+++..
T Consensus 123 N~~~s~i~~~A~~L~~~~~~~~~~~~~ 149 (292)
T 3aad_A 123 NGPKHSLTQISQSMLDLCDEKLKEKED 149 (292)
T ss_dssp TCSSSHHHHHHTHHHHTTTTTGGGSHH
T ss_pred cCCchHHHHHHHHHHHHHHhhhhcchh
Confidence 999999999999999999988876543
No 35
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.87 E-value=1.5e-22 Score=207.54 Aligned_cols=106 Identities=28% Similarity=0.508 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHH-HHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 006950 203 AMLMKQCENLLTR-LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (624)
Q Consensus 203 ~~l~k~c~~IL~~-L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (624)
..+...|..++.+ |++++.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 135 ~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~y 212 (265)
T 3uv5_A 135 VAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKY 212 (265)
T ss_dssp HHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHhCCCChh--HhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455566666654 77899999999999966 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 006950 282 NPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (624)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i~~~~ 310 (624)
|+++|.||.+|..|++.|+..|+++...+
T Consensus 213 N~~~s~~~~~A~~l~~~~~~~~~~~~~~~ 241 (265)
T 3uv5_A 213 NGPESQYTKTAQEIVNVCYQTLTEYDEHL 241 (265)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999886554
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.85 E-value=8.2e-22 Score=204.72 Aligned_cols=101 Identities=29% Similarity=0.539 Sum_probs=92.3
Q ss_pred HHHHHH-HHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCC
Q 006950 208 QCENLL-TRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (624)
Q Consensus 208 ~c~~IL-~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S 286 (624)
.+..++ ..|+.++.+|+|..|||+. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+++|
T Consensus 173 ~l~~i~~~~l~~~~~s~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s 250 (292)
T 3aad_A 173 ILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 250 (292)
T ss_dssp HHHHHHHHTGGGSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhhhhhhcCcchhHHHhccccc--ccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 344444 3478899999999999965 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Q 006950 287 DVHIMADTLRKYFEVRWKAIEKKL 310 (624)
Q Consensus 287 ~V~~~A~~L~~~Fe~~~k~i~~~~ 310 (624)
.||.+|..|++.|+..|+++...+
T Consensus 251 ~i~~~A~~L~~~~~~~~~~~~~~l 274 (292)
T 3aad_A 251 QYTKTAQEIVNVCYQTLTEYDEHL 274 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.83 E-value=2.8e-21 Score=202.36 Aligned_cols=86 Identities=30% Similarity=0.492 Sum_probs=82.8
Q ss_pred cCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHH
Q 006950 218 SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRK 297 (624)
Q Consensus 218 ~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~~ 297 (624)
.|+.+|+|.+|||+. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||+||++||+++|.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChh--hcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 367899999999976 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 006950 298 YFEVRWKA 305 (624)
Q Consensus 298 ~Fe~~~k~ 305 (624)
+|+..|++
T Consensus 255 ~f~~~~~~ 262 (311)
T 2r0y_A 255 YFNYLIQK 262 (311)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.83 E-value=4.4e-21 Score=204.67 Aligned_cols=85 Identities=31% Similarity=0.497 Sum_probs=82.5
Q ss_pred CCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHH
Q 006950 219 HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKY 298 (624)
Q Consensus 219 ~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~~~ 298 (624)
|+.+|+|..|||+. .+||||+||++||||+||++||.++.|.++.+|.+||+|||+||++||+++|.||.+|..|+++
T Consensus 228 ~~~s~~F~~pvd~~--~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTT--TCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChh--hcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 57899999999976 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 006950 299 FEVRWKA 305 (624)
Q Consensus 299 Fe~~~k~ 305 (624)
|+..|++
T Consensus 306 f~~~~~~ 312 (361)
T 2r10_A 306 FNYLIQK 312 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.79 E-value=1e-19 Score=194.11 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhhhh
Q 006950 204 MLMKQCENLLTRLMSH--QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS-DPLAFAADVRLTFSNAMT 280 (624)
Q Consensus 204 ~l~k~c~~IL~~L~~~--~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~-s~~eF~~DvrLIf~NA~~ 280 (624)
.+...|..+|+.|.+. ..+++|..||+ +..+||||+||++||||+||++|| +.|. ++.+|.+||+|||+||++
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~--~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPS--RKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCC--TTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCC--cccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhh
Confidence 3567899999998764 45899999988 458999999999999999999998 5555 899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006950 281 YNPPQNDVHIMADTLRKYFEVRWKAIE 307 (624)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (624)
||+++|.||.+|..|+++|+..|.+..
T Consensus 154 yN~~~s~i~~~a~~l~~~~~~~~~k~k 180 (361)
T 2r10_A 154 YNEYDSLIVKNSMQVVMLIEFEVLKAK 180 (361)
T ss_dssp HBCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999998764
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.77 E-value=1.7e-19 Score=188.93 Aligned_cols=101 Identities=20% Similarity=0.212 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHcC--CCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhhh
Q 006950 203 AMLMKQCENLLTRLMSH--QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS-DPLAFAADVRLTFSNAM 279 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~--~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~-s~~eF~~DvrLIf~NA~ 279 (624)
..|...|..+|..+... ..+++|.+||+ +..+||||+||++||||+||++|| +.|. ++.+|.+||+|||+||+
T Consensus 27 p~~~~~~~~~L~~~~~~~r~~~~~F~~p~~--~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~ 102 (311)
T 2r0y_A 27 PKFNRFISFTLDVLIDKYKDIFKDFIKLPS--RKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQ 102 (311)
T ss_dssp TTHHHHHHHHHHHHHHHSHHHHGGGSSCCC--TTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCchhHHhcCCCC--cccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHH
Confidence 34667777777777654 36899999987 558999999999999999999999 5565 89999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006950 280 TYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (624)
Q Consensus 280 ~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (624)
+||+++|.||.+|..|+++|++.|.+..
T Consensus 103 ~yN~~~s~i~~~A~~l~~~~~~~~~k~k 130 (311)
T 2r0y_A 103 AYNEYDSLIVKNSMQVVMLIEFEVLKAK 130 (311)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999998764
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.75 E-value=7.9e-18 Score=157.52 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 006950 203 AMLMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (624)
Q Consensus 203 ~~l~k~c~~IL~~L~~~~~------a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (624)
..++..+..|++.++++.. +.+|.+. |.+. |+||. ++||+|.+|++||.+|.|+++++|..||.|||.
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~L--Psk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEI--PAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTC--CSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHC--CCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4577889999999999853 7789987 4443 89998 999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 006950 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (624)
Q Consensus 277 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~~ 309 (624)
||++||.+||+||.+|..|+++|.+.+.++...
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999998766
No 42
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=1.8e-16 Score=137.40 Aligned_cols=75 Identities=28% Similarity=0.404 Sum_probs=68.2
Q ss_pred cccccccCCCHHHHHHHHHHHHhhcccChHHHHHHHhhhc-CC-CCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 006950 351 KAEPVRRVMTNEEKRILSTELEALLEELPESIIDFLKEHS-AG-ETGEDELEIDIDALSDDTLFALRKLLDDYLLEK 425 (624)
Q Consensus 351 ~~e~~kr~MT~eEK~kLs~~I~~Lp~E~l~~Iv~IIkk~~-~~-~~~~dEIEIDId~L~~~TL~eL~ryV~~~L~ek 425 (624)
..++.+++||++||++|+.+|+.||++++.+||+||++++ .. ...++|||||||.|++.|||+|++||.+||+.+
T Consensus 10 ~~e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~~k 86 (90)
T 2jns_A 10 EEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKK 86 (90)
T ss_dssp TTTSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHhh
Confidence 3556789999999999999999999999999999999998 33 357899999999999999999999999998775
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.47 E-value=6e-14 Score=136.35 Aligned_cols=97 Identities=18% Similarity=0.273 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCcCCCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhc
Q 006950 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (624)
Q Consensus 202 ~~~l~k~c~~IL~~L~~~~~a~~F~~PVd~~k~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (624)
..++...+..||+.|..++.+++|+.. .++.||||.||++||+.|.|.++.+|..||.|||+||..|
T Consensus 73 ~~el~~~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~ 139 (183)
T 3lqh_A 73 EKELQISLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINS 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Confidence 356777889999999999999999763 2599999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 006950 282 NPPQNDVHIMADTLRKYFEVRWKAIEKKLP 311 (624)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i~~~~p 311 (624)
|.+++.+..++..|+.+|++.++++-..++
T Consensus 140 ~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 140 DGGQPEIKKANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred cCCChhhhhhhhHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999988755544
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=94.55 E-value=0.046 Score=49.22 Aligned_cols=61 Identities=20% Similarity=0.276 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHhhcc-cChHHHHHHHhhhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHH
Q 006950 359 MTNEEKRILSTELEALLE-ELPESIIDFLKEHSAGETGEDELEIDIDALSDDTLFALRKLLD 419 (624)
Q Consensus 359 MT~eEK~kLs~~I~~Lp~-E~l~~Iv~IIkk~~~~~~~~dEIEIDId~L~~~TL~eL~ryV~ 419 (624)
--.+|-+.|...|-.|.. +.+.+||++|.+...+...+..+.||+.+||..|+++|+.|+.
T Consensus 59 ~y~~~L~~l~~rim~l~d~~~lq~iv~li~~tG~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 59 AYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp STHHHHHHHHHHHHTCCCCSSHHHHHHHHHTSCCEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhcCceeeecccccceeeccCHHHHHHHHHHHH
Confidence 346788999999999986 6689999999987777788899999999999999999999863
No 45
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=52.70 E-value=12 Score=25.32 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHhhhHHHHHHHHHhhhhhc
Q 006950 592 SPDKLYRAALLRNRFADTILKAREKALEK 620 (624)
Q Consensus 592 ~p~k~~raa~l~~rfad~i~ka~~k~~~~ 620 (624)
||+. |...|..|=.+.|+-||.|-|++
T Consensus 2 s~~e--Rq~~Lq~Rk~~mi~~ARrryl~k 28 (28)
T 3h8k_B 2 SADE--RQRMLVQRKDELLQQARKRFLNK 28 (28)
T ss_dssp CHHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHH--HHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444 45569999999999999998864
No 46
>1uty_A Non-structural protein 2; viral protein, RNA binding protein; 2.4A {Bluetongue virus} SCOP: b.147.1.1
Probab=25.16 E-value=14 Score=35.24 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006950 106 RRSLELKLKTDLEQVRVLQKK 126 (624)
Q Consensus 106 ~~~L~~rl~~eLeqvR~l~~k 126 (624)
.++||+||+.|.|+.|..+.+
T Consensus 154 Vre~RqK~ReeRE~~~~~~~~ 174 (187)
T 1uty_A 154 IRELRQKIKNERESAPRLQVH 174 (187)
T ss_dssp HHHHCCC--------------
T ss_pred HHHHHHHHHHHhhhhhhhccc
Confidence 899999999999999887764
Done!