Query 006951
Match_columns 624
No_of_seqs 172 out of 313
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 16:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05761 5_nucleotid: 5' nucle 100.0 5E-145 1E-149 1177.8 26.1 440 137-609 1-448 (448)
2 KOG2470 Similar to IMP-GMP spe 100.0 2E-126 5E-131 980.4 22.9 457 104-608 24-495 (510)
3 TIGR02244 HAD-IG-Ncltidse HAD 100.0 1E-105 3E-110 844.9 27.4 337 137-476 1-342 (343)
4 KOG2469 IMP-GMP specific 5'-nu 100.0 8E-104 2E-108 829.6 23.8 412 129-580 8-424 (424)
5 TIGR02253 CTE7 HAD superfamily 99.1 1.4E-09 2.9E-14 106.5 12.2 106 316-458 91-196 (221)
6 TIGR01422 phosphonatase phosph 98.8 5.9E-08 1.3E-12 97.8 15.3 102 318-457 98-201 (253)
7 PRK13288 pyrophosphatase PpaX; 98.8 1.1E-07 2.4E-12 93.2 14.0 101 319-457 82-182 (214)
8 PLN03243 haloacid dehalogenase 98.7 1.3E-07 2.9E-12 97.2 14.1 101 319-457 109-209 (260)
9 PLN02770 haloacid dehalogenase 98.6 4.1E-07 8.9E-12 92.2 14.1 102 318-457 107-208 (248)
10 PRK13478 phosphonoacetaldehyde 98.6 8.1E-07 1.8E-11 90.7 15.9 103 318-458 100-204 (267)
11 TIGR03351 PhnX-like phosphonat 98.6 7.2E-07 1.6E-11 87.6 14.1 102 319-458 87-192 (220)
12 PRK10826 2-deoxyglucose-6-phos 98.6 1.6E-06 3.5E-11 85.7 16.0 103 319-459 92-194 (222)
13 PRK13222 phosphoglycolate phos 98.6 1.5E-06 3.3E-11 85.0 15.2 102 318-457 92-193 (226)
14 PLN02940 riboflavin kinase 98.5 1.7E-06 3.8E-11 93.7 15.5 102 319-457 93-194 (382)
15 PRK10725 fructose-1-P/6-phosph 98.5 4.2E-06 9.2E-11 79.9 14.7 93 325-456 93-185 (188)
16 PRK13225 phosphoglycolate phos 98.5 2.6E-06 5.7E-11 88.4 14.2 100 318-458 141-240 (273)
17 TIGR02247 HAD-1A3-hyp Epoxide 98.4 3.4E-06 7.4E-11 82.4 14.0 100 319-458 94-197 (211)
18 PLN02575 haloacid dehalogenase 98.4 4.5E-06 9.8E-11 90.8 15.4 101 320-458 217-317 (381)
19 PRK10563 6-phosphogluconate ph 98.4 8.3E-06 1.8E-10 80.3 14.2 96 317-457 86-186 (221)
20 PRK11587 putative phosphatase; 98.3 2.3E-05 4.9E-10 77.6 16.1 101 318-457 82-182 (218)
21 PRK09456 ?-D-glucose-1-phospha 98.3 4.1E-06 8.9E-11 81.7 10.2 103 318-457 83-185 (199)
22 PF13419 HAD_2: Haloacid dehal 98.3 1.4E-06 3.1E-11 80.0 6.2 104 315-456 73-176 (176)
23 TIGR01509 HAD-SF-IA-v3 haloaci 98.2 5.9E-06 1.3E-10 77.8 9.0 100 318-456 84-183 (183)
24 TIGR01428 HAD_type_II 2-haloal 98.2 3.8E-06 8.2E-11 81.3 7.4 102 319-458 92-193 (198)
25 TIGR01548 HAD-SF-IA-hyp1 haloa 98.1 6.4E-05 1.4E-09 73.1 15.0 85 325-447 112-196 (197)
26 PRK13226 phosphoglycolate phos 98.0 1.4E-05 3.1E-10 79.9 8.0 103 317-457 93-195 (229)
27 PLN02919 haloacid dehalogenase 98.0 0.00011 2.5E-09 89.2 17.2 102 320-459 162-264 (1057)
28 TIGR01454 AHBA_synth_RP 3-amin 98.0 1.2E-05 2.7E-10 78.3 7.1 103 317-457 73-175 (205)
29 TIGR01449 PGP_bact 2-phosphogl 98.0 2.8E-05 6E-10 75.6 8.6 104 316-457 82-185 (213)
30 COG0546 Gph Predicted phosphat 97.9 0.00028 6E-09 70.5 14.7 100 317-457 87-189 (220)
31 TIGR01662 HAD-SF-IIIA HAD-supe 97.9 2.5E-05 5.3E-10 71.2 6.6 99 317-458 23-132 (132)
32 PRK09449 dUMP phosphatase; Pro 97.9 3.1E-05 6.7E-10 76.3 7.1 103 318-458 94-197 (224)
33 TIGR02252 DREG-2 REG-2-like, H 97.8 2.7E-05 5.8E-10 75.6 5.7 99 319-455 105-203 (203)
34 PRK14988 GMP/IMP nucleotidase; 97.8 3.3E-05 7.2E-10 77.4 5.8 104 318-459 92-195 (224)
35 TIGR01990 bPGM beta-phosphoglu 97.8 3.6E-05 7.9E-10 73.0 5.4 98 319-456 87-184 (185)
36 TIGR02254 YjjG/YfnB HAD superf 97.7 6.4E-05 1.4E-09 73.4 6.7 102 319-458 97-199 (224)
37 COG1011 Predicted hydrolase (H 97.7 8E-05 1.7E-09 72.9 7.2 107 317-461 97-203 (229)
38 cd01427 HAD_like Haloacid deha 97.6 8.6E-05 1.9E-09 64.8 5.7 113 318-456 23-139 (139)
39 TIGR02009 PGMB-YQAB-SF beta-ph 97.6 9.3E-05 2E-09 70.3 6.2 100 317-456 86-185 (185)
40 TIGR01691 enolase-ppase 2,3-di 97.6 0.00015 3.2E-09 73.5 7.7 102 319-459 95-198 (220)
41 TIGR01993 Pyr-5-nucltdase pyri 97.6 0.00011 2.3E-09 70.6 5.8 102 318-456 83-184 (184)
42 KOG3085 Predicted hydrolase (H 97.5 0.00051 1.1E-08 70.6 10.3 105 314-457 109-213 (237)
43 TIGR01668 YqeG_hyp_ppase HAD s 97.5 0.00013 2.9E-09 70.3 5.6 95 320-460 44-139 (170)
44 PRK13223 phosphoglycolate phos 97.5 0.00034 7.4E-09 72.3 8.5 102 318-457 100-201 (272)
45 PLN02779 haloacid dehalogenase 97.5 0.0002 4.3E-09 74.8 6.8 105 318-458 143-247 (286)
46 PLN02811 hydrolase 97.4 0.00035 7.6E-09 69.3 7.2 101 321-457 80-184 (220)
47 PLN02954 phosphoserine phospha 97.3 0.0045 9.8E-08 61.0 14.0 37 320-356 85-121 (224)
48 TIGR01685 MDP-1 magnesium-depe 97.3 0.00049 1.1E-08 67.5 6.6 109 321-458 47-158 (174)
49 PRK10748 flavin mononucleotide 97.3 0.00037 8E-09 70.3 5.6 99 318-459 112-210 (238)
50 TIGR01261 hisB_Nterm histidino 97.1 0.00089 1.9E-08 64.6 6.3 107 317-458 27-148 (161)
51 TIGR01656 Histidinol-ppas hist 97.1 0.00061 1.3E-08 63.9 4.8 104 319-457 27-145 (147)
52 TIGR01549 HAD-SF-IA-v1 haloaci 97.0 0.00094 2E-08 61.9 5.2 86 322-447 67-152 (154)
53 COG2179 Predicted hydrolase of 97.0 0.001 2.2E-08 65.2 5.1 93 321-460 48-141 (175)
54 PRK06769 hypothetical protein; 96.9 0.0011 2.3E-08 64.2 5.1 96 320-458 29-138 (173)
55 PRK06698 bifunctional 5'-methy 96.9 0.0026 5.5E-08 70.6 7.8 99 319-458 330-428 (459)
56 TIGR01681 HAD-SF-IIIC HAD-supe 96.8 0.001 2.3E-08 61.3 3.8 84 322-440 32-120 (128)
57 PRK08942 D,D-heptose 1,7-bisph 96.8 0.0024 5.1E-08 61.7 6.1 108 320-458 30-148 (181)
58 PRK11590 hypothetical protein; 96.8 0.042 9.1E-07 54.6 15.0 95 319-443 95-190 (211)
59 PRK05446 imidazole glycerol-ph 96.4 0.007 1.5E-07 65.7 7.3 105 318-457 29-148 (354)
60 TIGR00213 GmhB_yaeD D,D-heptos 96.4 0.0082 1.8E-07 57.9 6.6 113 320-457 27-150 (176)
61 TIGR01664 DNA-3'-Pase DNA 3'-p 96.3 0.0073 1.6E-07 58.4 6.1 103 313-454 36-159 (166)
62 TIGR01491 HAD-SF-IB-PSPlk HAD- 96.3 0.018 4E-07 55.2 8.6 109 319-455 80-188 (201)
63 PRK11133 serB phosphoserine ph 96.2 0.12 2.6E-06 55.4 15.1 105 318-454 180-288 (322)
64 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.0 0.0021 4.5E-08 66.1 0.5 101 323-458 124-225 (257)
65 smart00577 CPDc catalytic doma 96.0 0.018 3.9E-07 54.3 6.7 87 315-445 41-131 (148)
66 COG0637 Predicted phosphatase/ 95.4 0.14 3E-06 51.6 11.0 102 319-458 86-187 (221)
67 TIGR01489 DKMTPPase-SF 2,3-dik 95.3 0.11 2.5E-06 49.1 9.4 51 318-377 71-121 (188)
68 TIGR00338 serB phosphoserine p 95.3 0.086 1.9E-06 51.8 8.8 105 318-453 84-191 (219)
69 TIGR01452 PGP_euk phosphoglyco 95.0 0.0066 1.4E-07 62.8 0.2 37 420-457 211-247 (279)
70 COG0647 NagD Predicted sugar p 94.7 0.12 2.6E-06 54.4 8.5 37 421-458 200-236 (269)
71 TIGR01672 AphA HAD superfamily 94.7 0.068 1.5E-06 55.1 6.4 98 315-457 110-211 (237)
72 PF00702 Hydrolase: haloacid d 94.4 0.05 1.1E-06 52.3 4.6 82 321-446 129-212 (215)
73 TIGR01686 FkbH FkbH-like domai 94.4 0.054 1.2E-06 57.5 5.0 86 322-448 34-122 (320)
74 PF09419 PGP_phosphatase: Mito 94.3 0.14 3.1E-06 50.3 7.4 89 321-456 61-163 (168)
75 PRK09552 mtnX 2-hydroxy-3-keto 94.2 0.15 3.2E-06 50.8 7.6 40 318-357 73-112 (219)
76 TIGR01493 HAD-SF-IA-v2 Haloaci 94.2 0.022 4.8E-07 53.9 1.5 84 320-447 91-174 (175)
77 PHA02597 30.2 hypothetical pro 93.5 0.19 4E-06 48.8 6.6 101 318-459 73-176 (197)
78 KOG3109 Haloacid dehalogenase- 93.3 0.11 2.5E-06 53.2 4.9 111 314-460 95-208 (244)
79 TIGR01670 YrbI-phosphatas 3-de 93.2 0.063 1.4E-06 51.0 2.6 83 327-457 36-118 (154)
80 TIGR02726 phenyl_P_delta pheny 93.0 0.1 2.3E-06 51.0 3.9 110 296-455 13-123 (169)
81 TIGR01459 HAD-SF-IIA-hyp4 HAD- 93.0 0.039 8.4E-07 55.9 1.0 100 322-457 141-241 (242)
82 TIGR01490 HAD-SF-IB-hyp1 HAD-s 92.9 0.21 4.5E-06 48.3 5.9 107 321-458 89-198 (202)
83 KOG2469 IMP-GMP specific 5'-nu 92.3 0.0021 4.5E-08 70.3 -9.6 199 131-353 37-237 (424)
84 TIGR01684 viral_ppase viral ph 91.2 0.34 7.3E-06 51.8 5.5 69 302-384 133-202 (301)
85 PF13242 Hydrolase_like: HAD-h 91.1 0.17 3.8E-06 42.2 2.6 41 418-459 11-51 (75)
86 TIGR03333 salvage_mtnX 2-hydro 90.7 1.8 3.9E-05 43.0 9.8 68 284-356 40-107 (214)
87 PHA02530 pseT polynucleotide k 90.6 0.26 5.6E-06 51.0 3.9 105 321-456 189-295 (300)
88 TIGR01488 HAD-SF-IB Haloacid D 90.5 0.75 1.6E-05 43.2 6.7 37 320-356 74-110 (177)
89 PRK13582 thrH phosphoserine ph 89.6 1.3 2.8E-05 43.0 7.6 37 319-356 68-104 (205)
90 PHA03398 viral phosphatase sup 89.6 0.54 1.2E-05 50.3 5.4 69 302-384 135-204 (303)
91 TIGR01663 PNK-3'Pase polynucle 89.3 0.66 1.4E-05 53.2 6.2 35 312-346 190-224 (526)
92 PRK08238 hypothetical protein; 88.0 1.4 3E-05 49.9 7.6 46 321-378 74-119 (479)
93 PRK09484 3-deoxy-D-manno-octul 87.7 0.59 1.3E-05 45.7 3.9 81 326-453 55-135 (183)
94 TIGR02251 HIF-SF_euk Dullard-l 86.9 0.92 2E-05 43.7 4.6 55 313-376 36-90 (162)
95 TIGR01457 HAD-SF-IIA-hyp2 HAD- 86.3 0.56 1.2E-05 48.0 3.0 37 420-457 187-223 (249)
96 PRK11009 aphA acid phosphatase 85.3 2 4.4E-05 44.4 6.5 66 305-378 100-170 (237)
97 TIGR01459 HAD-SF-IIA-hyp4 HAD- 85.2 1.1 2.3E-05 45.5 4.4 49 321-378 26-77 (242)
98 PTZ00445 p36-lilke protein; Pr 84.4 1.3 2.7E-05 45.6 4.4 146 299-458 56-206 (219)
99 PRK10530 pyridoxal phosphate ( 84.3 2.4 5.1E-05 42.9 6.4 33 417-451 204-236 (272)
100 PLN02645 phosphoglycolate phos 81.6 1.1 2.3E-05 47.6 2.8 37 420-457 239-275 (311)
101 TIGR01525 ATPase-IB_hvy heavy 81.4 1.2 2.7E-05 50.9 3.4 36 321-356 386-422 (556)
102 PRK03669 mannosyl-3-phosphogly 80.4 1.6 3.6E-05 44.8 3.6 42 143-186 2-43 (271)
103 TIGR02137 HSK-PSP phosphoserin 80.1 3.8 8.3E-05 41.0 6.0 37 319-356 68-104 (203)
104 PF06888 Put_Phosphatase: Puta 79.8 7.1 0.00015 40.5 7.9 114 319-455 71-195 (234)
105 TIGR01512 ATPase-IB2_Cd heavy 79.1 2.2 4.8E-05 48.7 4.4 35 322-356 365-400 (536)
106 TIGR01456 CECR5 HAD-superfamil 78.7 1.2 2.6E-05 47.5 2.0 28 429-457 264-291 (321)
107 TIGR01545 YfhB_g-proteo haloac 78.5 7.8 0.00017 38.9 7.6 94 320-443 95-189 (210)
108 TIGR01460 HAD-SF-IIA Haloacid 78.2 1.6 3.5E-05 44.3 2.7 38 419-457 196-234 (236)
109 TIGR02250 FCP1_euk FCP1-like p 77.6 3.9 8.6E-05 39.4 5.0 43 313-356 52-94 (156)
110 PRK10444 UMP phosphatase; Prov 76.3 2.1 4.6E-05 44.2 3.0 37 420-457 183-219 (248)
111 PF13344 Hydrolase_6: Haloacid 75.5 3 6.4E-05 37.3 3.3 32 321-352 16-51 (101)
112 PHA02597 30.2 hypothetical pro 73.2 2.6 5.7E-05 40.8 2.6 14 148-161 2-15 (197)
113 TIGR01544 HAD-SF-IE haloacid d 73.1 29 0.00064 36.9 10.5 105 318-448 120-230 (277)
114 TIGR01487 SPP-like sucrose-pho 73.1 3.3 7.2E-05 40.8 3.3 30 417-447 152-181 (215)
115 COG0561 Cof Predicted hydrolas 71.6 3.2 7E-05 42.2 2.9 38 147-186 2-39 (264)
116 PRK10748 flavin mononucleotide 70.1 2.3 5.1E-05 42.9 1.5 21 144-164 6-26 (238)
117 PLN02779 haloacid dehalogenase 69.0 5.2 0.00011 42.0 3.8 36 146-185 38-73 (286)
118 TIGR01511 ATPase-IB1_Cu copper 67.6 7.1 0.00015 45.0 4.9 35 322-356 408-442 (562)
119 PRK09449 dUMP phosphatase; Pro 67.1 4.9 0.00011 39.6 3.0 32 147-185 2-33 (224)
120 PF05152 DUF705: Protein of un 67.1 9.2 0.0002 41.0 5.2 66 313-387 136-201 (297)
121 PRK13226 phosphoglycolate phos 64.9 7.2 0.00016 39.1 3.8 34 147-185 11-44 (229)
122 TIGR02254 YjjG/YfnB HAD superf 63.4 7.4 0.00016 37.9 3.5 18 148-165 1-18 (224)
123 TIGR01689 EcbF-BcbF capsule bi 63.1 11 0.00025 35.4 4.5 100 301-428 7-123 (126)
124 TIGR01662 HAD-SF-IIIA HAD-supe 62.3 4.7 0.0001 36.5 1.8 37 149-185 1-43 (132)
125 TIGR01993 Pyr-5-nucltdase pyri 61.1 11 0.00023 36.2 4.0 35 149-185 1-37 (184)
126 PRK10513 sugar phosphate phosp 58.4 9.2 0.0002 38.8 3.3 37 147-185 2-38 (270)
127 TIGR02252 DREG-2 REG-2-like, H 58.0 12 0.00025 36.3 3.8 32 149-185 1-32 (203)
128 PRK01158 phosphoglycolate phos 57.9 9.8 0.00021 37.5 3.3 35 416-452 161-195 (230)
129 PRK13223 phosphoglycolate phos 56.5 12 0.00026 38.8 3.9 34 147-185 12-45 (272)
130 COG0560 SerB Phosphoserine pho 56.5 35 0.00076 34.5 7.0 42 315-356 73-114 (212)
131 TIGR01689 EcbF-BcbF capsule bi 56.2 8.3 0.00018 36.3 2.3 15 149-163 2-16 (126)
132 PRK14988 GMP/IMP nucleotidase; 55.4 6.8 0.00015 39.4 1.7 20 143-162 5-24 (224)
133 TIGR02009 PGMB-YQAB-SF beta-ph 55.1 12 0.00026 35.4 3.3 16 148-163 1-16 (185)
134 PF08645 PNK3P: Polynucleotide 54.8 10 0.00022 36.6 2.8 34 311-344 21-54 (159)
135 TIGR01684 viral_ppase viral ph 52.9 13 0.00027 40.2 3.3 48 141-189 119-168 (301)
136 PRK13582 thrH phosphoserine ph 52.9 11 0.00025 36.4 2.8 21 424-445 140-160 (205)
137 PRK00192 mannosyl-3-phosphogly 52.6 14 0.0003 38.1 3.5 35 417-453 195-230 (273)
138 PTZ00174 phosphomannomutase; P 52.4 16 0.00034 37.3 3.9 37 147-185 4-40 (247)
139 PF08645 PNK3P: Polynucleotide 52.4 8.1 0.00018 37.3 1.6 17 149-165 1-17 (159)
140 TIGR01670 YrbI-phosphatas 3-de 51.6 16 0.00034 34.8 3.4 39 148-186 1-47 (154)
141 COG0731 Fe-S oxidoreductases [ 51.2 13 0.00028 40.0 3.0 81 256-346 31-120 (296)
142 PRK10976 putative hydrolase; P 51.1 15 0.00033 37.3 3.5 36 148-185 2-37 (266)
143 TIGR01664 DNA-3'-Pase DNA 3'-p 49.6 14 0.00031 35.8 2.8 40 147-186 12-61 (166)
144 cd01427 HAD_like Haloacid deha 49.5 13 0.00029 31.9 2.4 15 150-164 1-15 (139)
145 TIGR01449 PGP_bact 2-phosphogl 49.4 15 0.00032 35.7 2.9 30 151-185 1-30 (213)
146 PLN02645 phosphoglycolate phos 49.3 18 0.00038 38.4 3.7 65 300-378 33-97 (311)
147 TIGR02461 osmo_MPG_phos mannos 49.1 15 0.00032 37.3 3.0 34 150-186 1-34 (225)
148 TIGR00338 serB phosphoserine p 48.6 9.6 0.00021 37.4 1.5 19 145-163 11-29 (219)
149 PRK15126 thiamin pyrimidine py 47.9 15 0.00033 37.5 2.9 26 416-442 192-217 (272)
150 PHA03398 viral phosphatase sup 45.6 19 0.00041 38.9 3.2 48 142-190 122-171 (303)
151 TIGR02463 MPGP_rel mannosyl-3- 45.3 21 0.00046 35.2 3.4 33 151-185 2-34 (221)
152 smart00775 LNS2 LNS2 domain. T 44.5 17 0.00036 35.0 2.4 14 150-163 1-14 (157)
153 TIGR01990 bPGM beta-phosphoglu 44.4 18 0.0004 34.1 2.7 31 150-185 1-31 (185)
154 TIGR01482 SPP-subfamily Sucros 43.6 15 0.00033 36.0 2.1 33 151-185 1-33 (225)
155 PF11019 DUF2608: Protein of u 40.6 75 0.0016 33.1 6.7 47 312-358 74-120 (252)
156 COG1011 Predicted hydrolase (H 40.0 26 0.00055 34.3 3.0 23 145-167 1-23 (229)
157 TIGR01458 HAD-SF-IIA-hyp3 HAD- 39.3 27 0.00058 36.0 3.2 27 321-347 23-49 (257)
158 TIGR01681 HAD-SF-IIIC HAD-supe 38.3 32 0.00069 31.7 3.2 14 149-162 1-14 (128)
159 TIGR01428 HAD_type_II 2-haloal 38.2 17 0.00037 35.1 1.4 17 148-164 1-17 (198)
160 PRK08883 ribulose-phosphate 3- 37.5 29 0.00063 35.5 3.0 128 288-440 47-200 (220)
161 COG4359 Uncharacterized conser 37.0 4.7E+02 0.01 27.0 11.2 59 297-358 54-112 (220)
162 TIGR00213 GmhB_yaeD D,D-heptos 36.9 34 0.00073 32.9 3.2 38 149-186 2-45 (176)
163 PLN02887 hydrolase family prot 36.0 36 0.00078 39.9 3.8 37 147-185 307-343 (580)
164 TIGR01491 HAD-SF-IB-PSPlk HAD- 35.6 19 0.00042 34.3 1.4 17 148-164 4-20 (201)
165 PF12710 HAD: haloacid dehalog 35.6 32 0.00069 32.5 2.8 35 322-356 92-126 (192)
166 PF06941 NT5C: 5' nucleotidase 34.7 20 0.00043 35.1 1.3 28 320-347 74-101 (191)
167 PF00834 Ribul_P_3_epim: Ribul 34.5 77 0.0017 32.1 5.5 51 322-385 92-142 (201)
168 PRK08745 ribulose-phosphate 3- 33.2 36 0.00078 35.0 2.9 129 288-440 51-204 (223)
169 cd06280 PBP1_LacI_like_4 Ligan 32.8 81 0.0018 31.2 5.3 25 133-157 172-211 (263)
170 smart00775 LNS2 LNS2 domain. T 32.7 40 0.00086 32.5 3.0 37 321-357 29-65 (157)
171 TIGR01457 HAD-SF-IIA-hyp2 HAD- 32.0 50 0.0011 33.9 3.7 22 322-343 20-41 (249)
172 COG4850 Uncharacterized conser 31.6 54 0.0012 36.1 4.0 56 322-377 199-259 (373)
173 PF03031 NIF: NLI interacting 31.4 67 0.0015 30.1 4.2 53 314-375 31-83 (159)
174 PLN02423 phosphomannomutase 31.3 48 0.0011 34.0 3.5 19 146-164 4-23 (245)
175 PRK10727 DNA-binding transcrip 31.2 97 0.0021 32.4 5.8 68 133-201 237-329 (343)
176 PRK10444 UMP phosphatase; Prov 30.9 44 0.00094 34.6 3.1 36 321-356 19-54 (248)
177 PF12689 Acid_PPase: Acid Phos 30.4 26 0.00055 34.7 1.3 11 149-159 4-14 (169)
178 PRK12702 mannosyl-3-phosphogly 30.4 51 0.0011 35.7 3.6 37 148-186 1-37 (302)
179 PRK10671 copA copper exporting 30.1 46 0.001 40.2 3.6 35 322-356 653-687 (834)
180 PF10146 zf-C4H2: Zinc finger- 29.9 3E+02 0.0065 28.7 8.9 12 457-468 34-45 (230)
181 PF00702 Hydrolase: haloacid d 29.8 27 0.00059 33.4 1.3 18 148-165 1-18 (215)
182 PRK06769 hypothetical protein; 29.7 39 0.00085 32.7 2.4 45 145-189 1-50 (173)
183 TIGR00099 Cof-subfamily Cof su 29.6 43 0.00093 33.9 2.8 34 150-185 1-34 (256)
184 TIGR01509 HAD-SF-IA-v3 haloaci 29.6 20 0.00043 33.6 0.3 16 150-165 1-16 (183)
185 PF07058 Myosin_HC-like: Myosi 29.6 3.4E+02 0.0074 29.8 9.3 77 457-538 44-131 (351)
186 KOG0600 Cdc2-related protein k 29.3 2.5E+02 0.0053 32.9 8.7 169 75-268 120-313 (560)
187 TIGR01672 AphA HAD superfamily 28.4 29 0.00062 36.0 1.3 14 150-163 65-78 (237)
188 cd06270 PBP1_GalS_like Ligand 27.9 1.6E+02 0.0035 29.1 6.5 24 133-156 177-215 (268)
189 PF08282 Hydrolase_3: haloacid 27.7 42 0.00091 32.5 2.2 33 151-185 1-33 (254)
190 PRK08942 D,D-heptose 1,7-bisph 27.6 52 0.0011 31.6 2.8 17 147-164 2-18 (181)
191 PF10146 zf-C4H2: Zinc finger- 27.5 3.5E+02 0.0075 28.2 8.9 13 472-484 36-48 (230)
192 TIGR00685 T6PP trehalose-phosp 26.8 30 0.00066 35.2 1.1 30 418-448 173-202 (244)
193 TIGR01493 HAD-SF-IA-v2 Haloaci 26.7 28 0.0006 32.8 0.7 14 150-163 1-14 (175)
194 TIGR01261 hisB_Nterm histidino 26.7 68 0.0015 31.0 3.5 38 149-186 2-48 (161)
195 cd06289 PBP1_MalI_like Ligand- 26.3 1.7E+02 0.0037 28.6 6.3 24 133-156 178-216 (268)
196 PF02358 Trehalose_PPase: Treh 25.9 43 0.00094 33.7 2.0 29 153-181 2-30 (235)
197 PRK14502 bifunctional mannosyl 25.9 1.3E+02 0.0028 36.2 6.1 44 141-186 409-452 (694)
198 TIGR01486 HAD-SF-IIB-MPGP mann 25.8 62 0.0014 32.9 3.2 29 417-446 181-211 (256)
199 KOG2961 Predicted hydrolase (H 25.6 52 0.0011 32.8 2.4 46 414-460 121-170 (190)
200 KOG1937 Uncharacterized conser 24.7 1.2E+02 0.0027 34.6 5.4 76 489-564 366-445 (521)
201 PF06657 Cep57_MT_bd: Centroso 24.4 1.8E+02 0.004 25.3 5.3 23 517-539 52-74 (79)
202 PF03962 Mnd1: Mnd1 family; I 24.2 2.2E+02 0.0047 28.6 6.6 10 383-392 4-13 (188)
203 cd06296 PBP1_CatR_like Ligand- 24.1 1.6E+02 0.0034 29.0 5.6 67 133-199 178-268 (270)
204 PF08444 Gly_acyl_tr_C: Aralky 24.1 67 0.0015 28.9 2.6 32 155-186 24-55 (89)
205 KOG2882 p-Nitrophenyl phosphat 23.9 65 0.0014 34.9 2.9 42 425-467 238-279 (306)
206 COG0241 HisB Histidinol phosph 23.7 67 0.0014 32.3 2.8 23 321-343 33-55 (181)
207 TIGR01454 AHBA_synth_RP 3-amin 23.7 30 0.00065 33.6 0.4 30 151-185 1-31 (205)
208 TIGR02417 fruct_sucro_rep D-fr 23.7 73 0.0016 32.9 3.3 66 133-199 238-327 (327)
209 COG1609 PurR Transcriptional r 23.6 2E+02 0.0044 30.8 6.6 65 134-200 238-328 (333)
210 TIGR01522 ATPase-IIA2_Ca golgi 23.6 96 0.0021 38.0 4.7 95 322-439 531-628 (884)
211 TIGR01663 PNK-3'Pase polynucle 23.2 52 0.0011 38.1 2.2 40 146-186 166-216 (526)
212 PF12325 TMF_TATA_bd: TATA ele 23.1 6.4E+02 0.014 23.8 9.0 37 450-486 11-48 (120)
213 TIGR01656 Histidinol-ppas hist 22.8 69 0.0015 29.9 2.6 37 149-185 1-45 (147)
214 KOG3109 Haloacid dehalogenase- 22.3 1.1E+02 0.0023 32.2 3.9 54 147-201 14-75 (244)
215 TIGR01668 YqeG_hyp_ppase HAD s 22.0 89 0.0019 30.1 3.3 41 144-186 21-62 (170)
216 TIGR01533 lipo_e_P4 5'-nucleot 21.2 93 0.002 32.9 3.5 36 321-356 120-155 (266)
217 TIGR01484 HAD-SF-IIB HAD-super 21.2 86 0.0019 30.4 3.0 32 151-183 2-33 (204)
218 PF13419 HAD_2: Haloacid dehal 20.8 76 0.0016 28.8 2.4 14 151-164 1-14 (176)
219 cd06275 PBP1_PurR Ligand-bindi 20.1 1.9E+02 0.0042 28.4 5.3 24 133-156 178-216 (269)
220 TIGR01452 PGP_euk phosphoglyco 20.1 95 0.0021 32.2 3.2 24 322-345 21-44 (279)
No 1
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=100.00 E-value=5e-145 Score=1177.82 Aligned_cols=440 Identities=43% Similarity=0.700 Sum_probs=354.3
Q ss_pred eEecCccccCCCcEEEEecccceeecCccchHHHHHHHHHHHHhh-cCCCCCC--CCCCccccccceEeecCCCcEEeec
Q 006951 137 IFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRN-MGFPVEG--LAFDPDLVIRGLVIDKEKGNLVKAD 213 (624)
Q Consensus 137 IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~-~gYP~~~--L~yDp~F~iRGLv~D~~~GnLLKvD 213 (624)
|||||+|+|++|+|||||||||||+|+++++++|||++++++||+ +|||+++ ++|||+|+|||||||+++|||||||
T Consensus 1 VF~Nr~l~l~~i~~iGFDmDyTLa~Y~~~~~~~L~y~~~~~~LV~~~gYP~~ll~~~~dp~F~iRGL~~D~~~GnlLKld 80 (448)
T PF05761_consen 1 VFVNRSLNLKDIDVIGFDMDYTLARYKSPELEELIYELARERLVEEKGYPEELLNLEYDPDFAIRGLVIDKERGNLLKLD 80 (448)
T ss_dssp -EESS-EECCC--EEEE-TBTTTBEE-CCHHHHHHHHHHHHHHHHHTT--GGGGG----CCC--TTEEEETTTTEEEEEB
T ss_pred CeeCCccccccCCEEEECcccchhhcCHHHHHHHHHHHHHHHHHhccCCCHHHhCCCCchhhhhcceeeEcccCeEEEEc
Confidence 899999999999999999999999999999999999999999996 9999884 5799999999999999999999999
Q ss_pred CCCcEEEEeeccccCcHhHHHHHhcCeecccccccchhhhhhhhchhHHHHHHHHHHHhh--hCCCCCCCCCCChHHHHH
Q 006951 214 RFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVNRLD--EGAIGPELGPLDYKGLYK 291 (624)
Q Consensus 214 ~~G~I~~a~HG~~~Ls~eEi~e~Yg~~~i~~~~~~r~~~l~tlFslpEa~L~a~lVd~~d--~~~~~~~l~~~~y~~l~~ 291 (624)
++|+|++|+||+++|+.+||+++||+++++.....+|.+++|+||+||+||||++||++| ++.+ .++|..||+
T Consensus 81 ~~g~I~~a~hG~~~l~~eei~~~Y~~~~i~~~~~~~~~~l~tlFslpe~~L~a~lvd~~d~~~~~~-----~~~~~~l~~ 155 (448)
T PF05761_consen 81 RFGYILRAYHGFRPLSDEEIRELYGNKFIPLSDDSRFFQLNTLFSLPEAYLFAQLVDYFDVEDGNI-----EYDYRSLYQ 155 (448)
T ss_dssp TTSBEEEEEETTEEE-HHHHCCCCTTSB--TTSTTTEEEE-SCCHHHHHHHHHHHHHHHHECCTTC-----CEEHHHHHH
T ss_pred CCCcEEEEEeccccCCHHHHHHhcCCcccccchhhHHHHHhhHhhhhHHHHHHHHHHHhhcccCCC-----CCCHHHHHH
Confidence 999999999999999999999999999999877669999999999999999999999999 4433 588999999
Q ss_pred HHHHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCc
Q 006951 292 AVGKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLF 371 (624)
Q Consensus 292 DV~~Av~~vH~~G~lk~~v~~npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyF 371 (624)
||++||++||.+|.||++|++||+|||+|+|+++++|++||++||||||||||+|+|||++|+|++|.++++++|||+||
T Consensus 156 DV~~Avd~~H~~G~lk~~v~~dp~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlF 235 (448)
T PF05761_consen 156 DVRDAVDHVHRDGSLKREVKEDPEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLF 235 (448)
T ss_dssp HHHHHHHHHHHCSCHHHHHHTTCCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCE
T ss_pred HHHHHHHHHhcchHHHHHHHHCHHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCCCCCCCCccEEEeCCCCceecc---ccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccc
Q 006951 372 NMVIVSARKPEFFQMSHPLYEVVTGEGLMRPC---FKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVH 448 (624)
Q Consensus 372 DvVIv~ArKP~FF~e~~pf~~v~~~~g~l~~~---~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~ 448 (624)
|||||+|+||+||++++|||+|++++|.+.+. .++++|+||+|||+.+|++++||+|++||||||||||||++||+.
T Consensus 236 DvVIv~A~KP~FF~~~~pfr~vd~~~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~ 315 (448)
T PF05761_consen 236 DVVIVDARKPGFFTEGRPFREVDTETGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKR 315 (448)
T ss_dssp CEEEES--CCHHHCT---EEEEETTTSSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHH
T ss_pred eEEEEcCCCCcccCCCCceEEEECCCCccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccc
Confidence 99999999999999999999999999998764 478999999999999999999999999999999999999999999
Q ss_pred cCceEEeehHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhccccChHHHHHHHHHHH
Q 006951 449 LRWRTALICRELEEEYNALINSRGQRARLVELINQKEVVGDLFNQLRLSLQRRNRGHPAQTLAATNMDDQELTESMQKLL 528 (624)
Q Consensus 449 ~gWRT~aIVpELe~Ei~v~~~~~~~~~~L~~L~~~~~~l~d~~~~l~~~lq~~~~~~~~~~~~~~~~~~~e~~~~~~~l~ 528 (624)
+||||+|||||||+||++|++.+..+++|..|..+.+.+.+.+.+++ +.+.++
T Consensus 316 ~gWrT~~Ii~ELe~Ei~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~---------------------------~~~~~~ 368 (448)
T PF05761_consen 316 HGWRTAAIIPELEQEIEIWNSKKYRFEELQELEELLEELQDHLDQLR---------------------------SSSELR 368 (448)
T ss_dssp H-SEEEEE-TTHHHHHHHHHHTHHHHHHHHHHHHHCHHHHCHHHHHH---------------------------HHHHHH
T ss_pred cceEEEEEehhhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHhcccc---------------------------cchhhH
Confidence 99999999999999999999888888887777655544444333221 122333
Q ss_pred HHHHHHHhhhhhhhhccccccccccccccccCCCCcChhhhhhhccchhhcccccccccCCCCcccccCCcCCCCCcccc
Q 006951 529 VVMQRLDQKIAPMLESDGELFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHYTPFMYFRSQEQTLAHDSYSY 608 (624)
Q Consensus 529 ~~~~~ld~~~~~~~~~~~~lFN~~fGslfRtg~~~~S~Fa~Qv~RyADLYtS~vsNLL~Ysp~~~Fr~~r~~LpHE~~~~ 608 (624)
..+++++++++.+++++++.|||+||||||||+ ++||||+||+||||||||+|+|||+|||+++|||+|++||||+++|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~fn~~~GslfRtg~-~~s~Fa~qv~RyAdlYtS~v~Nll~y~~~~~Fr~~~~~lpHE~~~~ 447 (448)
T PF05761_consen 369 PDISELRKERRELRREMKELFNPQFGSLFRTGH-NPSYFARQVERYADLYTSSVSNLLNYSPNYYFRPPRDLLPHESTVW 447 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-TTT-BSSEETT-EEBHHHHHHHHH-SEEESSHHHHHHS-TT-EE-------CCG----
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHHHHhcCC-CccHHHHHHHHHhhhhhccccHHHhCCcceEEeCCCCCCCCCCCCC
Confidence 445556666777778889999999999999996 9999999999999999999999999999999999999999999987
Q ss_pred c
Q 006951 609 Y 609 (624)
Q Consensus 609 ~ 609 (624)
.
T Consensus 448 ~ 448 (448)
T PF05761_consen 448 H 448 (448)
T ss_dssp -
T ss_pred C
Confidence 3
No 2
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.5e-126 Score=980.37 Aligned_cols=457 Identities=30% Similarity=0.477 Sum_probs=408.4
Q ss_pred chHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCeeEecCccccCCCcEEEEecccceeecCccchHHHHHHHHHHHHh-hc
Q 006951 104 IEEVARMEAQEAEHLLNDFGIPSPSSARNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLR-NM 182 (624)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv-~~ 182 (624)
|....|+...+++ +.|.||+..++..||++||+|++++|++|++||||||||||+|.+. ++.|||+++++.|| ++
T Consensus 24 ~t~~~he~~~~~~---r~l~ip~~i~sllnp~aiy~nne~sl~dievygfdydytla~ys~h-lh~lif~~ard~lvn~f 99 (510)
T KOG2470|consen 24 ITKIRHEFELAKQ---RFLNIPEAINSLLNPQAIYVNNELSLDDIEVYGFDYDYTLAHYSSH-LHSLIFDLARDHLVNEF 99 (510)
T ss_pred HHHHhhhhhhccc---cccCCCHHHHhccChhheeecCcccccceeEeccccchhHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 3344555555555 4566899999999999999999999999999999999999999865 99999999999998 59
Q ss_pred CCCCCC--CCCCccccccceEeecCCCcEEeecCCCcEEE--EeeccccCcHhHHHHHhcCeecccccc-------cchh
Q 006951 183 GFPVEG--LAFDPDLVIRGLVIDKEKGNLVKADRFGYVKR--AMHGTTMLSNRAVSEMYGRELVDLRKE-------SRWE 251 (624)
Q Consensus 183 gYP~~~--L~yDp~F~iRGLv~D~~~GnLLKvD~~G~I~~--a~HG~~~Ls~eEi~e~Yg~~~i~~~~~-------~r~~ 251 (624)
.||+.+ ++|||+|+||||++|+++|.|||+|+||+|+. ||+|.++++++||.++||+.+|++.+. +.+.
T Consensus 100 rYPe~i~q~eYdPnFaIRGLhYDv~kglLmKlDaF~~iqlgt~YrGr~kv~~eEvi~mY~~rhipl~q~~g~~~k~~~mv 179 (510)
T KOG2470|consen 100 RYPEVIRQYEYDPNFAIRGLHYDVQKGLLMKLDAFHYIQLGTVYRGRRKVPDEEVIEMYGGRHIPLDQMSGFYGKGSKMV 179 (510)
T ss_pred cChHHhhhcccCCCcccchhhhHhhhhhheeeccceeeccCceeecCccCCHHHHHHHhcCCccCHHHhcCccCCCchHH
Confidence 999765 58999999999999999999999999999995 999999999999999999999997654 4588
Q ss_pred hhhhhhchhHHHHHHHHHHHhhhCCCCCCCCCCChHHHHHHHHHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHH
Q 006951 252 FLNTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQ 331 (624)
Q Consensus 252 ~l~tlFslpEa~L~a~lVd~~d~~~~~~~l~~~~y~~l~~DV~~Av~~vH~~G~lk~~v~~npeKYI~kdp~l~~~L~~l 331 (624)
+|+|+||+|||||++|+|+||..+.+ .+++..+|+||++||..||+.|.+ +|.+|+||||+++|++..+|.+|
T Consensus 180 qlmDiFs~pEmcLls~vveYF~~~~l-----efd~~~ly~Dv~~ai~~vH~~~~~--~i~~~~ekyi~r~~ql~~fl~kL 252 (510)
T KOG2470|consen 180 QLMDIFSLPEMCLLSCVVEYFLDNKL-----EFDPSHLYKDVNDAIRDVHRKGHM--KIESDLEKYIERNPQLLAFLRKL 252 (510)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhccc-----cCCHHHHHHhHHHHHHHhhhhhhH--HHhhchHHHhhccHHHHHHHHHH
Confidence 99999999999999999999998876 488999999999999999999999 89999999999999999999999
Q ss_pred HHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCC-CCccEEEeCCCCcee--ccccCCC
Q 006951 332 KEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQM-SHPLYEVVTGEGLMR--PCFKART 408 (624)
Q Consensus 332 r~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e-~~pf~~v~~~~g~l~--~~~~l~~ 408 (624)
+.+|||+||||||||.|+|++|+|++| +|||++||||||+|+||.||++ .+|||..|..+|.+. .+.+++|
T Consensus 253 ~~~GKklFLiTNSPysFVd~GM~flvG------~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdkv~klek 326 (510)
T KOG2470|consen 253 KDHGKKLFLITNSPYSFVDKGMRFLVG------DDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDKVDKLEK 326 (510)
T ss_pred HHhcCcEEEEeCCchhhhhcCceeeeC------ccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhhhhhccc
Confidence 999999999999999999999999995 8999999999999999999996 569999998888764 5789999
Q ss_pred CccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006951 409 GGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYNALINSRGQRARLVELINQKEVVG 488 (624)
Q Consensus 409 G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVpELe~Ei~v~~~~~~~~~~L~~L~~~~~~l~ 488 (624)
|+||.+||+.+|.+++||+|++|||||||+|||++++...+||||+|||||||+||++++ .++++....|+....++|+
T Consensus 327 gkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~EL~~Eiki~N-~e~y~~s~~w~q~lt~Lle 405 (510)
T KOG2470|consen 327 GKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIPELEREIKIQN-TEQYRFSQTWLQILTGLLE 405 (510)
T ss_pred CceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999985 6778888888754444444
Q ss_pred HHHHHHHHHHhhhcCCCCchhhhccccChHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccCCCCcChhh
Q 006951 489 DLFNQLRLSLQRRNRGHPAQTLAATNMDDQELTESMQKLLVVMQRLDQKIAPMLESDGELFNKRWGFLSRAGLWDKSHLM 568 (624)
Q Consensus 489 d~~~~l~~~lq~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~ld~~~~~~~~~~~~lFN~~fGslfRtg~~~~S~Fa 568 (624)
+. |- ..+. +....|.+||++.+ .+++.+|++||.+|||+|||.+ |||||+
T Consensus 406 r~--------q~-~rse----------------asq~~L~ew~~eRq----~lR~~tK~~FN~qFGs~FrT~~-nptyFs 455 (510)
T KOG2470|consen 406 RM--------QA-QRSE----------------ASQSVLDEWMKERQ----ELRDTTKQMFNAQFGSTFRTDH-NPTYFS 455 (510)
T ss_pred HH--------Hh-hhhH----------------HHHHHHHHHHHHHH----HHHHHHHHHHHHhhcceeeccC-CccHHH
Confidence 32 21 0111 23344555665532 2456789999999999999985 899999
Q ss_pred hhhhccchhhcccccccccCCCCcccccCCcCCCCCcccc
Q 006951 569 RQIEKYADIYTSRVSNFLHYTPFMYFRSQEQTLAHDSYSY 608 (624)
Q Consensus 569 ~Qv~RyADLYtS~vsNLL~Ysp~~~Fr~~r~~LpHE~~~~ 608 (624)
|++.||||||||+++|||+|++.|+|||+|++||||.++|
T Consensus 456 rrl~rfaDiYts~lsnlL~y~~~htfYprr~~mpHe~~~~ 495 (510)
T KOG2470|consen 456 RRLHRFADIYTSSLSNLLNYRVEHTFYPRRTPMPHEVPVW 495 (510)
T ss_pred HHHHHHHHHHhccHHHHHhcCcccccCCcCCCCccccccc
Confidence 9999999999999999999999999999999999999999
No 3
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=100.00 E-value=1.2e-105 Score=844.90 Aligned_cols=337 Identities=44% Similarity=0.716 Sum_probs=317.9
Q ss_pred eEecCccccCCCcEEEEecccceeecCccchHHHHHHHHHHHHhh-cCCCCCC--CCCCccccccceEeecCCCcEEeec
Q 006951 137 IFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRN-MGFPVEG--LAFDPDLVIRGLVIDKEKGNLVKAD 213 (624)
Q Consensus 137 IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~-~gYP~~~--L~yDp~F~iRGLv~D~~~GnLLKvD 213 (624)
|||||+|+|++|+|||||||||||+|+++++|.|||++++++||+ +|||+++ ++|||+|+||||++|+++|||||+|
T Consensus 1 if~nr~l~l~~i~~~GFDmDyTLa~Y~~~~~e~L~y~~~~~~LV~~~gYp~~l~~~~~d~~f~iRGL~~D~~~GnllKld 80 (343)
T TIGR02244 1 VFVNRELNLEKIQVFGFDMDYTLAQYKSPELEALIYDLAKERLVKRFGYPEELLSFAYDPTFAIRGLVFDKLKGNLLKLD 80 (343)
T ss_pred CeeCCccccccCCEEEECccccccccChHHHHHHHHHHHHHHHHHhcCCChHHhCCcCCCcccccceeeEcccCeEEEEc
Confidence 899999999999999999999999999999999999999999997 6999765 5799999999999999999999999
Q ss_pred CCCcEEEEeeccccCcHhHHHHHhcCeecccccccchhhhhhhhchhHHHHHHHHHHHhhhCCCCCCCCCCChHHHHHHH
Q 006951 214 RFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDYKGLYKAV 293 (624)
Q Consensus 214 ~~G~I~~a~HG~~~Ls~eEi~e~Yg~~~i~~~~~~r~~~l~tlFslpEa~L~a~lVd~~d~~~~~~~l~~~~y~~l~~DV 293 (624)
++|+|++|+||+++|+.+||.++||+++++..+.++|.+|||+|||||||||||+||+||+... ++ ..++|.+||+||
T Consensus 81 ~~g~I~~~~hG~~~l~~~e~~~~Y~~~~~~~~~~~~~~~l~tlF~lpe~~L~a~lvd~~~~~~~-~~-~~~~~~~~~~dv 158 (343)
T TIGR02244 81 RFGNILRGYHGLRPLSDKEVQEIYGNKYISRSNGDRYYLLDTLFSLPEACLIAQLVDYFDDHPK-GP-LAFDYRQIYQDV 158 (343)
T ss_pred CCCcEEEEecCCccCCHHHHHHHcCccccCCCCCccEEEecccccchHHHHHHHHHHHHhcccc-CC-CCCCHHHHHHHH
Confidence 9999999999999999999999999999988777799999999999999999999999997643 11 268999999999
Q ss_pred HHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccE
Q 006951 294 GKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNM 373 (624)
Q Consensus 294 ~~Av~~vH~~G~lk~~v~~npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDv 373 (624)
++||++||.+|.||++|++||++||+++|.++.+|.+|+++|+|+||+|||+++|++.+|+|++|+++ ++++|++|||+
T Consensus 159 ~~av~~~h~~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~-~~~~w~~yFD~ 237 (343)
T TIGR02244 159 RDALDWVHRKGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFL-GEHDWRDYFDV 237 (343)
T ss_pred HHHHHHhcccchHHHHHHHCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcc-cccchHhhCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999987666 67999999999
Q ss_pred EEEccCCCCCCCCCCccEEEeCCCCceeccc--cCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCc
Q 006951 374 VIVSARKPEFFQMSHPLYEVVTGEGLMRPCF--KARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRW 451 (624)
Q Consensus 374 VIv~ArKP~FF~e~~pf~~v~~~~g~l~~~~--~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gW 451 (624)
||++|+||+||++++|||+|++++|.+++.. .+++|+||+|||+.+|++++||++++||||||||++||+.+||.+||
T Consensus 238 IIt~a~KP~FF~~~~pf~~v~~~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw 317 (343)
T TIGR02244 238 VIVDARKPGFFTEGRPFRQVDVETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGW 317 (343)
T ss_pred EEeCCCCCcccCCCCceEEEeCCCCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCc
Confidence 9999999999999999999999999877542 37899999999999999999999999999999999999999999999
Q ss_pred eEEeehHhhHHHHHHHHhhHHHHHH
Q 006951 452 RTALICRELEEEYNALINSRGQRAR 476 (624)
Q Consensus 452 RT~aIVpELe~Ei~v~~~~~~~~~~ 476 (624)
||++|+||||+|+++|.++++++++
T Consensus 318 ~TvlI~pEL~~E~~~~~~~~~~~~~ 342 (343)
T TIGR02244 318 RTAAIIPELEQEVGILTNSKSLREE 342 (343)
T ss_pred EEEEEchhHHHHHHHHhhchhhhhc
Confidence 9999999999999999876665443
No 4
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.2e-104 Score=829.64 Aligned_cols=412 Identities=44% Similarity=0.705 Sum_probs=377.7
Q ss_pred CCCCCCCeeEecCccccCCCcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCCCCCC--CCCccccccceEeecCC
Q 006951 129 SARNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPVEGL--AFDPDLVIRGLVIDKEK 206 (624)
Q Consensus 129 ~~~~~~~~IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~~~L--~yDp~F~iRGLv~D~~~ 206 (624)
..|..+++|||||+|+|++|.+|||||||||++|+.+++|.|||+++.+.|++.|||.+++ .|||+|++|||++|.++
T Consensus 8 ~~r~~~~~if~~rsl~l~~i~~~GfdmDyTL~~Y~~~~~esLay~~~~~~l~~~Gyp~~ll~~~~d~~f~~rGL~ld~~~ 87 (424)
T KOG2469|consen 8 DGRDVPHRIFCNRSLNLENIGIVGFDMDYTLARYNLPEMESLAYDLAQFLLKDKGYPNELLSTSFDWNFPCRGLVLDKER 87 (424)
T ss_pred cccccchheehhhhhhhhcCcEEeeccccchhhhcccchHHHHHHHHHHHHHhcCChhhhhccccCccceeeeeEEeccC
Confidence 4567788899999999999999999999999999999999999997777788999997654 69999999999999999
Q ss_pred CcEEeecCCCcEEEEeeccccCcHhHHHHHhcCeecccccccchhhhhhhhchhHHHHHHHHHHHhhhCCCCCCCCCCCh
Q 006951 207 GNLVKADRFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDY 286 (624)
Q Consensus 207 GnLLKvD~~G~I~~a~HG~~~Ls~eEi~e~Yg~~~i~~~~~~r~~~l~tlFslpEa~L~a~lVd~~d~~~~~~~l~~~~y 286 (624)
||+||+|++|+|++|+||+++++.+|+.++||++.+++.+ ++|+.++|+|++||+.++||+||++|++...+.. .++|
T Consensus 88 GN~lKld~~~~vl~a~hg~rfls~~~~~eiyg~~~~~~~~-~~~~~l~t~F~~~ea~~~aq~vd~~d~~~~~~~~-~~dy 165 (424)
T KOG2469|consen 88 GNLLKLDRFGYVLRAAHGTRFLSNEEISEIYGRKLVRLSD-SRYYLLNTLFSMPEADLFAQAVDFLDNGPEYGPV-DMDY 165 (424)
T ss_pred CceeeeeccCceeeeccccccccccchhhhcccccccccC-chhhhhhhhhhchhHHHHHhhcchhhcCCccCcc-chhh
Confidence 9999999999999999999999999999999999999988 9999999999999999999999999999877543 7899
Q ss_pred HHHHHHHHHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCC
Q 006951 287 KGLYKAVGKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMG 366 (624)
Q Consensus 287 ~~l~~DV~~Av~~vH~~G~lk~~v~~npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~d 366 (624)
+.+|+||++|+++||.+|.+|++++++|||||++++.+|++|.++|++|||+||+|||.|+|||.+|+++++ .|
T Consensus 166 k~~~~~v~~~~~~~h~~~~lk~~~~~~pek~V~~d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~------~d 239 (424)
T KOG2469|consen 166 KPGWKDVRAAGNAVHLYGLLKKKMMGKPERYVVYDGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYG------FD 239 (424)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhcCCCceeeecCccccchHHHHhhccceEEeeccccchhhHHHHHHhC------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 79
Q ss_pred CCCCccEEEEccCCCCCCCCCCccEEEeCCCCceec---cccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccccc
Q 006951 367 WRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRP---CFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVS 443 (624)
Q Consensus 367 WrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~l~~---~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl 443 (624)
|+.|||+|||.|+||+||.+++++|+|++++|++++ +.++++|++|+||+++.++.+++.+|++|||+|||||+||+
T Consensus 240 W~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl 319 (424)
T KOG2469|consen 240 WETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGPLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVL 319 (424)
T ss_pred cceeEEEEEEeccCCccccccceeeeeccccccccccccCCcchhcccCCcchHHHHHHHhcccccceeecccceeeeEE
Confidence 999999999999999999999999999999999886 56789999999999999999999999999999999999999
Q ss_pred ccccccCceEEeehHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhccccChHHHHHH
Q 006951 444 QSKVHLRWRTALICRELEEEYNALINSRGQRARLVELINQKEVVGDLFNQLRLSLQRRNRGHPAQTLAATNMDDQELTES 523 (624)
Q Consensus 444 ~sKk~~gWRT~aIVpELe~Ei~v~~~~~~~~~~L~~L~~~~~~l~d~~~~l~~~lq~~~~~~~~~~~~~~~~~~~e~~~~ 523 (624)
.|||++||||++|||||+.|..+|..++ +++.++++....++|+|++++.++++.....+ ...++++++++
T Consensus 320 ~skk~~~wrt~lv~peL~~e~~v~~~~k---e~~~el~~~~~~laDiy~~l~~s~~s~~~~~~------~~r~~~~~~~~ 390 (424)
T KOG2469|consen 320 VSKKRRGWRTVLVAPELEREDLVLLDSK---EEFIELLNWSSKLADIYPNLDLSLLSAPKDLS------IKRDIQKLTEC 390 (424)
T ss_pred ecceecceEEEEEehhhhhhhhhhccch---HHHHHHhccchhhHhhccCCchhhhhcccccc------hhHHHHHHHHh
Confidence 9999999999999999999999998765 56788888899999999999887666433332 22223332222
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccccccccccccCCCCcChhhhhhhccchhhcc
Q 006951 524 MQKLLVVMQRLDQKIAPMLESDGELFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTS 580 (624)
Q Consensus 524 ~~~l~~~~~~ld~~~~~~~~~~~~lFN~~fGslfRtg~~~~S~Fa~Qv~RyADLYtS 580 (624)
| ..|+-.|||+||||+ +.|.||.|++||||||||
T Consensus 391 -------~---------------dk~~~~~~sl~~s~~-~~t~~a~q~~r~A~~y~s 424 (424)
T KOG2469|consen 391 -------M---------------DKFYGVWGSLFRTGY-QRTRFALQVERYADLYTS 424 (424)
T ss_pred -------H---------------HHHhcchHHhhcccc-ccchHHHHHHHHHHHhcC
Confidence 1 345668999999997 999999999999999997
No 5
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.06 E-value=1.4e-09 Score=106.47 Aligned_cols=106 Identities=24% Similarity=0.348 Sum_probs=82.4
Q ss_pred cccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeC
Q 006951 316 LFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVT 395 (624)
Q Consensus 316 KYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~ 395 (624)
.++...|.+..+|.+|+++|.++.++||++-.++...+..+ +|.+|||.|++.....
T Consensus 91 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~---------~l~~~f~~i~~~~~~~-------------- 147 (221)
T TIGR02253 91 AYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL---------GVRDFFDAVITSEEEG-------------- 147 (221)
T ss_pred HhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC---------ChHHhccEEEEeccCC--------------
Confidence 35667889999999999999999999999998888887754 4999999998754221
Q ss_pred CCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 396 GEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 396 ~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
..+| ...+ .....+.+|....+++||||++..||..+++ .||+|++|-.
T Consensus 148 ---~~KP-----~~~~-----~~~~~~~~~~~~~~~~~igDs~~~di~~A~~-aG~~~i~~~~ 196 (221)
T TIGR02253 148 ---VEKP-----HPKI-----FYAALKRLGVKPEEAVMVGDRLDKDIKGAKN-LGMKTVWINQ 196 (221)
T ss_pred ---CCCC-----CHHH-----HHHHHHHcCCChhhEEEECCChHHHHHHHHH-CCCEEEEECC
Confidence 1111 1122 2455667788889999999999999998876 5999999853
No 6
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.85 E-value=5.9e-08 Score=97.84 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=75.6
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCc-cEEEEccCCCCCCCCCCccEEEeCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLF-NMVIVSARKPEFFQMSHPLYEVVTG 396 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyF-DvVIv~ArKP~FF~e~~pf~~v~~~ 396 (624)
+..-|.+..+|..|+++|.++.++||+.-..++.+++.+ .+.++| |.||+...-+
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~---------gl~~~f~d~ii~~~~~~--------------- 153 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEA---------ALQGYRPDYNVTTDDVP--------------- 153 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHH---------HhcCCCCceEEccccCC---------------
Confidence 455688999999999999999999999999999988765 266775 8887643210
Q ss_pred CCceeccccCCCCccccCCCHHHHHHHhCCC-CCcEEEEcCcccccccccccccCceEEeeh
Q 006951 397 EGLMRPCFKARTGGLYSGGSAQMIENSLNIH-GDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 397 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~-G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
.-+| ...+| ....+.+|.. ..+++||||.+ .||..++. .|++|++|.
T Consensus 154 --~~KP-----~p~~~-----~~a~~~l~~~~~~~~l~IGDs~-~Di~aA~~-aGi~~i~v~ 201 (253)
T TIGR01422 154 --AGRP-----APWMA-----LKNAIELGVYDVAACVKVGDTV-PDIEEGRN-AGMWTVGLI 201 (253)
T ss_pred --CCCC-----CHHHH-----HHHHHHcCCCCchheEEECCcH-HHHHHHHH-CCCeEEEEe
Confidence 0011 11233 2345566764 67899999998 99998875 699999995
No 7
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.77 E-value=1.1e-07 Score=93.23 Aligned_cols=101 Identities=21% Similarity=0.199 Sum_probs=76.9
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
..-|....+|..|+++|.++.++||+.-.++..++..+ .|.+|||.|++...-+
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~---------gl~~~f~~i~~~~~~~----------------- 135 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLT---------GLDEFFDVVITLDDVE----------------- 135 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CChhceeEEEecCcCC-----------------
Confidence 34588999999999999999999999999999888765 4899999998633210
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
..+| ++.+| ..+.+.+|...++++||||+. .||..++. .|+++++|-
T Consensus 136 ~~Kp-----~p~~~-----~~~~~~~~~~~~~~~~iGDs~-~Di~aa~~-aG~~~i~v~ 182 (214)
T PRK13288 136 HAKP-----DPEPV-----LKALELLGAKPEEALMVGDNH-HDILAGKN-AGTKTAGVA 182 (214)
T ss_pred CCCC-----CcHHH-----HHHHHHcCCCHHHEEEECCCH-HHHHHHHH-CCCeEEEEc
Confidence 0001 12222 345566788888999999997 89998875 599999874
No 8
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.74 E-value=1.3e-07 Score=97.23 Aligned_cols=101 Identities=11% Similarity=0.216 Sum_probs=78.5
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
..-|.+..+|..|+++|.++.++||++..++..++.++ .|.+|||.||+...-. .+
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~---------gl~~~Fd~ii~~~d~~---------------~~ 164 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAV---------GMEGFFSVVLAAEDVY---------------RG 164 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHc---------CCHhhCcEEEecccCC---------------CC
Confidence 34688999999999999999999999999999999876 3999999999764210 00
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
+| ...+| ....+.+|....+++||||.. .||..++. .||++++|-
T Consensus 165 --KP-----~Pe~~-----~~a~~~l~~~p~~~l~IgDs~-~Di~aA~~-aG~~~i~v~ 209 (260)
T PLN03243 165 --KP-----DPEMF-----MYAAERLGFIPERCIVFGNSN-SSVEAAHD-GCMKCVAVA 209 (260)
T ss_pred --CC-----CHHHH-----HHHHHHhCCChHHeEEEcCCH-HHHHHHHH-cCCEEEEEe
Confidence 11 12233 355667788889999999995 68887775 699999884
No 9
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.65 E-value=4.1e-07 Score=92.22 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=79.2
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
+..-|.+..+|..|++.|.++.++||++-.++...++.+ .|.+|||.||+...-+.
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~---------gl~~~Fd~iv~~~~~~~--------------- 162 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLL---------GLSDFFQAVIIGSECEH--------------- 162 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc---------CChhhCcEEEecCcCCC---------------
Confidence 345678999999999999999999999999999999865 38999999988764210
Q ss_pred CceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
+ +| +..+ .....+.+|....+++||||.. .||..++ ..|++|++|-
T Consensus 163 ~--KP-----~p~~-----~~~a~~~~~~~~~~~l~vgDs~-~Di~aA~-~aGi~~i~v~ 208 (248)
T PLN02770 163 A--KP-----HPDP-----YLKALEVLKVSKDHTFVFEDSV-SGIKAGV-AAGMPVVGLT 208 (248)
T ss_pred C--CC-----ChHH-----HHHHHHHhCCChhHEEEEcCCH-HHHHHHH-HCCCEEEEEe
Confidence 0 11 0111 2344566788888999999999 8999887 4699999984
No 10
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.63 E-value=8.1e-07 Score=90.66 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=73.9
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCC-ccEEEEccCCCCCCCCCCccEEEeCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDL-FNMVIVSARKPEFFQMSHPLYEVVTG 396 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdy-FDvVIv~ArKP~FF~e~~pf~~v~~~ 396 (624)
+..-|....+|..|+++|.++.++||+.-..++.++..+ .+.++ ||.||+...-+
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~---------~l~~~~~d~i~~~~~~~--------------- 155 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLA---------AAQGYRPDHVVTTDDVP--------------- 155 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH---------hhcCCCceEEEcCCcCC---------------
Confidence 445688999999999999999999999999998888754 14455 48776543210
Q ss_pred CCceeccccCCCCccccCCCHHHHHHHhCCC-CCcEEEEcCcccccccccccccCceEEeehH
Q 006951 397 EGLMRPCFKARTGGLYSGGSAQMIENSLNIH-GDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 397 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~-G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
..+| ...+| ....+.+|.. ..+++||||.. .||..++. .|++|++|..
T Consensus 156 --~~KP-----~p~~~-----~~a~~~l~~~~~~e~l~IGDs~-~Di~aA~~-aG~~~i~v~~ 204 (267)
T PRK13478 156 --AGRP-----YPWMA-----LKNAIELGVYDVAACVKVDDTV-PGIEEGLN-AGMWTVGVIL 204 (267)
T ss_pred --CCCC-----ChHHH-----HHHHHHcCCCCCcceEEEcCcH-HHHHHHHH-CCCEEEEEcc
Confidence 0011 11222 3445556775 47899999998 89998875 6999999964
No 11
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.61 E-value=7.2e-07 Score=87.59 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=76.3
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCC--CCccEEEEccCCCCCCCCCCccEEEeCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWR--DLFNMVIVSARKPEFFQMSHPLYEVVTG 396 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWr--dyFDvVIv~ArKP~FF~e~~pf~~v~~~ 396 (624)
..-|.+..+|..|+++|.++.++||+.-.++..++..+ .|. +|||.|++...-.
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~---------~l~~~~~f~~i~~~~~~~--------------- 142 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKL---------GWTVGDDVDAVVCPSDVA--------------- 142 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHh---------hhhhhccCCEEEcCCcCC---------------
Confidence 45678899999999999999999999999999999865 266 9999999875421
Q ss_pred CCceeccccCCCCccccCCCHHHHHHHhCCC-CCcEEEEcCcccccccccccccCceE-EeehH
Q 006951 397 EGLMRPCFKARTGGLYSGGSAQMIENSLNIH-GDEILYVGDHIYTDVSQSKVHLRWRT-ALICR 458 (624)
Q Consensus 397 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~-G~~VLYfGDHIy~DIl~sKk~~gWRT-~aIVp 458 (624)
.+ +| ...+| ....+.+|.. ..+++||||.. .||..++. .||+| ++|..
T Consensus 143 ~~--KP-----~p~~~-----~~a~~~~~~~~~~~~~~igD~~-~Di~aa~~-aG~~~~i~~~~ 192 (220)
T TIGR03351 143 AG--RP-----APDLI-----LRAMELTGVQDVQSVAVAGDTP-NDLEAGIN-AGAGAVVGVLT 192 (220)
T ss_pred CC--CC-----CHHHH-----HHHHHHcCCCChhHeEEeCCCH-HHHHHHHH-CCCCeEEEEec
Confidence 01 11 11122 2344556776 57999999997 79988875 69999 77754
No 12
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.59 E-value=1.6e-06 Score=85.67 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=79.3
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
..-|.+..+|..|++.|.++.++||+.-..+..+++++ .+.++||.|++...-+ .+
T Consensus 92 ~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~~~~~~~~~---------------~~ 147 (222)
T PRK10826 92 PLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF---------DLRDYFDALASAEKLP---------------YS 147 (222)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC---------cchhcccEEEEcccCC---------------CC
Confidence 44588999999999999999999999999999998875 3889999988663210 01
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehHh
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 459 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVpE 459 (624)
+| ++.+| ..+++.+|....+++||||+. .||...+. .|+++++|-..
T Consensus 148 --Kp-----~~~~~-----~~~~~~~~~~~~~~~~igDs~-~Di~aA~~-aG~~~i~v~~~ 194 (222)
T PRK10826 148 --KP-----HPEVY-----LNCAAKLGVDPLTCVALEDSF-NGMIAAKA-ARMRSIVVPAP 194 (222)
T ss_pred --CC-----CHHHH-----HHHHHHcCCCHHHeEEEcCCh-hhHHHHHH-cCCEEEEecCC
Confidence 01 11122 456777888888999999998 79998875 69999998643
No 13
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.57 E-value=1.5e-06 Score=85.00 Aligned_cols=102 Identities=21% Similarity=0.310 Sum_probs=75.9
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
...-|.+..+|..++++|.++.++||+.-.+...++..+ .|.++||.|+....-
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~~~~~~~~----------------- 145 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEAL---------GIADYFSVVIGGDSL----------------- 145 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CCccCccEEEcCCCC-----------------
Confidence 445688999999999999999999999999998888755 378899987653210
Q ss_pred CceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
+..+| ++. -...+.+.++....+++||||.. .|+...+. .||.|++|.
T Consensus 146 ~~~kp-----~~~-----~~~~~~~~~~~~~~~~i~igD~~-~Di~~a~~-~g~~~i~v~ 193 (226)
T PRK13222 146 PNKKP-----DPA-----PLLLACEKLGLDPEEMLFVGDSR-NDIQAARA-AGCPSVGVT 193 (226)
T ss_pred CCCCc-----ChH-----HHHHHHHHcCCChhheEEECCCH-HHHHHHHH-CCCcEEEEC
Confidence 00001 011 13345566677888999999995 89998876 699999985
No 14
>PLN02940 riboflavin kinase
Probab=98.52 E-value=1.7e-06 Score=93.72 Aligned_cols=102 Identities=16% Similarity=0.259 Sum_probs=76.7
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
..-|.+..+|..|+++|.++.++||+.-.+++..+.-.+ .|.+|||.|++...-.
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~--------gl~~~Fd~ii~~d~v~----------------- 147 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQ--------GWKESFSVIVGGDEVE----------------- 147 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcc--------ChHhhCCEEEehhhcC-----------------
Confidence 345889999999999999999999999999888776332 3999999998854210
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
..+| +..+| ....+.+|....++++|||.. .||..++. .|+++++|-
T Consensus 148 ~~KP-----~p~~~-----~~a~~~lgv~p~~~l~VGDs~-~Di~aA~~-aGi~~I~v~ 194 (382)
T PLN02940 148 KGKP-----SPDIF-----LEAAKRLNVEPSNCLVIEDSL-PGVMAGKA-AGMEVIAVP 194 (382)
T ss_pred CCCC-----CHHHH-----HHHHHHcCCChhHEEEEeCCH-HHHHHHHH-cCCEEEEEC
Confidence 0011 11222 345666788889999999998 59887765 699999985
No 15
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.46 E-value=4.2e-06 Score=79.91 Aligned_cols=93 Identities=10% Similarity=0.161 Sum_probs=67.5
Q ss_pred hHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCceeccc
Q 006951 325 PLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCF 404 (624)
Q Consensus 325 ~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~l~~~~ 404 (624)
..+|..|++. .++.++||+.-.+++..++.+ .|.+|||.|++...- +..+|
T Consensus 93 ~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~---------~l~~~fd~i~~~~~~-----------------~~~KP-- 143 (188)
T PRK10725 93 IEVVKAWHGR-RPMAVGTGSESAIAEALLAHL---------GLRRYFDAVVAADDV-----------------QHHKP-- 143 (188)
T ss_pred HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhC---------CcHhHceEEEehhhc-----------------cCCCC--
Confidence 5678888765 789999999999999998875 389999998875321 00011
Q ss_pred cCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEee
Q 006951 405 KARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 456 (624)
Q Consensus 405 ~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aI 456 (624)
...+| ....+.+|....+++||||. ..||..++. .||+|++|
T Consensus 144 ---~p~~~-----~~~~~~~~~~~~~~l~igDs-~~di~aA~~-aG~~~i~~ 185 (188)
T PRK10725 144 ---APDTF-----LRCAQLMGVQPTQCVVFEDA-DFGIQAARA-AGMDAVDV 185 (188)
T ss_pred ---ChHHH-----HHHHHHcCCCHHHeEEEecc-HhhHHHHHH-CCCEEEee
Confidence 01122 23445567777899999997 889988875 69999987
No 16
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.46 E-value=2.6e-06 Score=88.41 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=77.5
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
+..-|.+..+|..|+++|.++.++||+.-.+++.+++.+ .|.++||.|++....+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~---------gl~~~F~~vi~~~~~~---------------- 195 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ---------GLRSLFSVVQAGTPIL---------------- 195 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CChhheEEEEecCCCC----------------
Confidence 455688999999999999999999999999999999865 3899999887542110
Q ss_pred CceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
+ +..+ ...+++.++....+++||||.+ .||..++. .||+|++|..
T Consensus 196 ----~-----k~~~-----~~~~l~~~~~~p~~~l~IGDs~-~Di~aA~~-AG~~~I~v~~ 240 (273)
T PRK13225 196 ----S-----KRRA-----LSQLVAREGWQPAAVMYVGDET-RDVEAARQ-VGLIAVAVTW 240 (273)
T ss_pred ----C-----CHHH-----HHHHHHHhCcChhHEEEECCCH-HHHHHHHH-CCCeEEEEec
Confidence 0 0111 2345566677788999999996 69998876 7999999854
No 17
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.45 E-value=3.4e-06 Score=82.42 Aligned_cols=100 Identities=21% Similarity=0.245 Sum_probs=70.8
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEcc----CCCCCCCCCCccEEEe
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA----RKPEFFQMSHPLYEVV 394 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A----rKP~FF~e~~pf~~v~ 394 (624)
...|.+..+|..|+++|.++.++||+............ ...+.++||.|++.. +||
T Consensus 94 ~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~-------~~~l~~~fd~v~~s~~~~~~KP------------- 153 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALL-------PGDIMALFDAVVESCLEGLRKP------------- 153 (211)
T ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhh-------hhhhHhhCCEEEEeeecCCCCC-------------
Confidence 34578899999999999999999999765432222111 124889999998542 233
Q ss_pred CCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 395 TGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 395 ~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
...+| ...++.+|....+++||||. ..||..++. .||.|++|.+
T Consensus 154 -------------~p~~~-----~~~~~~~g~~~~~~l~i~D~-~~di~aA~~-aG~~~i~v~~ 197 (211)
T TIGR02247 154 -------------DPRIY-----QLMLERLGVAPEECVFLDDL-GSNLKPAAA-LGITTIKVSD 197 (211)
T ss_pred -------------CHHHH-----HHHHHHcCCCHHHeEEEcCC-HHHHHHHHH-cCCEEEEECC
Confidence 11232 34566778888999999875 668887775 6999999863
No 18
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.42 E-value=4.5e-06 Score=90.82 Aligned_cols=101 Identities=11% Similarity=0.179 Sum_probs=77.5
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCc
Q 006951 320 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 399 (624)
Q Consensus 320 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~ 399 (624)
.-|.+..+|..|+++|.++.++||++-.+++..+..+ .|.+|||.||+...... +
T Consensus 217 l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~l---------gL~~yFd~Iv~sddv~~---------------~- 271 (381)
T PLN02575 217 LRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSI---------GIRGFFSVIVAAEDVYR---------------G- 271 (381)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CCHHHceEEEecCcCCC---------------C-
Confidence 3478899999999999999999999999999998865 38999999988653210 0
Q ss_pred eeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 400 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 400 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
+| ...+| ....+.+|...++++||||.. .||..++ ..||++++|..
T Consensus 272 -KP-----~Peif-----l~A~~~lgl~Peecl~IGDS~-~DIeAAk-~AGm~~IgV~~ 317 (381)
T PLN02575 272 -KP-----DPEMF-----IYAAQLLNFIPERCIVFGNSN-QTVEAAH-DARMKCVAVAS 317 (381)
T ss_pred -CC-----CHHHH-----HHHHHHcCCCcccEEEEcCCH-HHHHHHH-HcCCEEEEECC
Confidence 01 11222 234566788889999999987 5877666 47999999964
No 19
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.35 E-value=8.3e-06 Score=80.31 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=70.2
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCcc-EEEEcc----CCCCCCCCCCccE
Q 006951 317 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFN-MVIVSA----RKPEFFQMSHPLY 391 (624)
Q Consensus 317 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFD-vVIv~A----rKP~FF~e~~pf~ 391 (624)
.+...|.+..+|..| +.++.++||++-.+++..+... +..++|| +|++.- .||
T Consensus 86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~---------~l~~~F~~~v~~~~~~~~~KP---------- 143 (221)
T PRK10563 86 ELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKT---------GMLHYFPDKLFSGYDIQRWKP---------- 143 (221)
T ss_pred cCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhc---------ChHHhCcceEeeHHhcCCCCC----------
Confidence 455568899999988 4789999999999999887654 4788996 555432 222
Q ss_pred EEeCCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 392 EVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 392 ~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
+..+| ....+.+|....+++||||.. .||..++ ..|++|+++.
T Consensus 144 ----------------~p~~~-----~~a~~~~~~~p~~~l~igDs~-~di~aA~-~aG~~~i~~~ 186 (221)
T PRK10563 144 ----------------DPALM-----FHAAEAMNVNVENCILVDDSS-AGAQSGI-AAGMEVFYFC 186 (221)
T ss_pred ----------------ChHHH-----HHHHHHcCCCHHHeEEEeCcH-hhHHHHH-HCCCEEEEEC
Confidence 11222 244566788788999999998 6988776 5799999874
No 20
>PRK11587 putative phosphatase; Provisional
Probab=98.31 E-value=2.3e-05 Score=77.56 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=69.5
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
+..-|....+|..|+++|.++.++||+....+....... .+ .+||.|++...-
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~---------~l-~~~~~i~~~~~~----------------- 134 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA---------GL-PAPEVFVTAERV----------------- 134 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhc---------CC-CCccEEEEHHHh-----------------
Confidence 344688999999999999999999999988776665532 13 457776643110
Q ss_pred CceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
+..+| ...+| ....+.+|....+++||||+. .||..++ ..|+.|++|-
T Consensus 135 ~~~KP-----~p~~~-----~~~~~~~g~~p~~~l~igDs~-~di~aA~-~aG~~~i~v~ 182 (218)
T PRK11587 135 KRGKP-----EPDAY-----LLGAQLLGLAPQECVVVEDAP-AGVLSGL-AAGCHVIAVN 182 (218)
T ss_pred cCCCC-----CcHHH-----HHHHHHcCCCcccEEEEecch-hhhHHHH-HCCCEEEEEC
Confidence 00011 11222 234556788889999999995 6887666 4699999984
No 21
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.29 E-value=4.1e-06 Score=81.70 Aligned_cols=103 Identities=16% Similarity=0.285 Sum_probs=75.4
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
....|.+..+|.+++++|.++.++||++-..+....... ..|.++||.|++... .
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~--------~~l~~~fd~v~~s~~-----------------~ 137 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEY--------PEVRAAADHIYLSQD-----------------L 137 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhc--------hhHHHhcCEEEEecc-----------------c
Confidence 345788999999999999999999999977665544322 248899999987642 1
Q ss_pred CceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
|..+| +..+| ....+.+|....+++||||+.. ||..++ ..||+|+.|-
T Consensus 138 ~~~KP-----~p~~~-----~~~~~~~~~~p~~~l~vgD~~~-di~aA~-~aG~~~i~~~ 185 (199)
T PRK09456 138 GMRKP-----EARIY-----QHVLQAEGFSAADAVFFDDNAD-NIEAAN-ALGITSILVT 185 (199)
T ss_pred CCCCC-----CHHHH-----HHHHHHcCCChhHeEEeCCCHH-HHHHHH-HcCCEEEEec
Confidence 11112 23344 3566777888899999999975 776665 4799999874
No 22
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.27 E-value=1.4e-06 Score=79.99 Aligned_cols=104 Identities=25% Similarity=0.370 Sum_probs=83.3
Q ss_pred ccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEe
Q 006951 315 ELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVV 394 (624)
Q Consensus 315 eKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~ 394 (624)
...+...|.+..+|.+|+++|.++.++||.+-.++...++.+ .|.++||.|++....+.
T Consensus 73 ~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~---------~~~~~f~~i~~~~~~~~------------ 131 (176)
T PF13419_consen 73 ESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL---------GLDDYFDEIISSDDVGS------------ 131 (176)
T ss_dssp HGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT---------THGGGCSEEEEGGGSSS------------
T ss_pred hhccchhhhhhhhhhhcccccceeEEeecCCccccccccccc---------ccccccccccccchhhh------------
Confidence 367788999999999999999999999999999998888876 37799999998754321
Q ss_pred CCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEee
Q 006951 395 TGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 456 (624)
Q Consensus 395 ~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aI 456 (624)
.+| ...+ ...+.+-+|....++++|||+. .||..++. .||+|+.|
T Consensus 132 -----~Kp-----~~~~-----~~~~~~~~~~~p~~~~~vgD~~-~d~~~A~~-~G~~~i~v 176 (176)
T PF13419_consen 132 -----RKP-----DPDA-----YRRALEKLGIPPEEILFVGDSP-SDVEAAKE-AGIKTIWV 176 (176)
T ss_dssp -----STT-----SHHH-----HHHHHHHHTSSGGGEEEEESSH-HHHHHHHH-TTSEEEEE
T ss_pred -----hhh-----HHHH-----HHHHHHHcCCCcceEEEEeCCH-HHHHHHHH-cCCeEEeC
Confidence 111 1122 3456666799999999999999 99998875 69999986
No 23
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.21 E-value=5.9e-06 Score=77.80 Aligned_cols=100 Identities=31% Similarity=0.481 Sum_probs=72.9
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
+...|.+..+|.+|++.|.++.++||+.... ...... + .+.++||.||+... .
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~-~--------~l~~~f~~i~~~~~-----------------~ 136 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQE-L--------GLRDLFDVVIFSGD-----------------V 136 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHh-c--------CCHHHCCEEEEcCC-----------------C
Confidence 5678999999999999999999999999988 444332 2 36779999987521 0
Q ss_pred CceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEee
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 456 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aI 456 (624)
|..+| ...+| ..+.+.+|...++++||||+. .||..++ ..||+|++|
T Consensus 137 ~~~KP-----~~~~~-----~~~~~~~~~~~~~~~~vgD~~-~di~aA~-~~G~~~i~v 183 (183)
T TIGR01509 137 GRGKP-----DPDIY-----LLALKKLGLKPEECLFVDDSP-AGIEAAK-AAGMHTVLV 183 (183)
T ss_pred CCCCC-----CHHHH-----HHHHHHcCCCcceEEEEcCCH-HHHHHHH-HcCCEEEeC
Confidence 11111 11233 355667788889999999998 4887776 479999976
No 24
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.18 E-value=3.8e-06 Score=81.34 Aligned_cols=102 Identities=26% Similarity=0.500 Sum_probs=78.3
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
..-|.+..+|.+|+++|.++.++||++..+....++.+ .+.++||.|++... .|
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~---------gl~~~fd~i~~s~~-----------------~~ 145 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA---------GLDDPFDAVLSADA-----------------VR 145 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC---------CChhhhheeEehhh-----------------cC
Confidence 34688999999999999999999999999999888754 38899999887521 01
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
..+| ...+| ....+.+|..-.++++|||+. .||..++. .||+|+.|-+
T Consensus 146 ~~KP-----~~~~~-----~~~~~~~~~~p~~~~~vgD~~-~Di~~A~~-~G~~~i~v~r 193 (198)
T TIGR01428 146 AYKP-----APQVY-----QLALEALGVPPDEVLFVASNP-WDLGGAKK-FGFKTAWVNR 193 (198)
T ss_pred CCCC-----CHHHH-----HHHHHHhCCChhhEEEEeCCH-HHHHHHHH-CCCcEEEecC
Confidence 1111 11222 345667788888999999999 89998865 7999999865
No 25
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.14 E-value=6.4e-05 Score=73.10 Aligned_cols=85 Identities=19% Similarity=0.247 Sum_probs=63.0
Q ss_pred hHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCceeccc
Q 006951 325 PLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCF 404 (624)
Q Consensus 325 ~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~l~~~~ 404 (624)
..+|..|++.|.++.++||++-.++..+++.+ .|..|||.|++...-+ . +|
T Consensus 112 ~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~---------gl~~~f~~~~~~~~~~-----------------~-KP-- 162 (197)
T TIGR01548 112 KGLLRELHRAPKGMAVVTGRPRKDAAKFLTTH---------GLEILFPVQIWMEDCP-----------------P-KP-- 162 (197)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHHHHHHc---------CchhhCCEEEeecCCC-----------------C-Cc--
Confidence 78899999999999999999999999999865 3889999888743311 0 11
Q ss_pred cCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccccccccc
Q 006951 405 KARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKV 447 (624)
Q Consensus 405 ~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk 447 (624)
+..+ .....+.+|....+++||||.+ .||...++
T Consensus 163 ---~p~~-----~~~~~~~~~~~~~~~i~vGD~~-~Di~aA~~ 196 (197)
T TIGR01548 163 ---NPEP-----LILAAKALGVEACHAAMVGDTV-DDIITGRK 196 (197)
T ss_pred ---CHHH-----HHHHHHHhCcCcccEEEEeCCH-HHHHHHHh
Confidence 1112 2234555788888999999998 58876653
No 26
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.02 E-value=1.4e-05 Score=79.92 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=77.7
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCC
Q 006951 317 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 396 (624)
Q Consensus 317 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~ 396 (624)
++..-|....+|..|++.|.++.++||+.-.++..+++.+ .|.++||+|++.-..
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~---------~l~~~f~~i~~~~~~---------------- 147 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQL---------GWEQRCAVLIGGDTL---------------- 147 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc---------CchhcccEEEecCcC----------------
Confidence 4556789999999999999999999999998888877754 489999998765321
Q ss_pred CCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 397 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 397 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
+..+| +..+ .....+.+|....+++||||+. .||...+ ..||+|++|.
T Consensus 148 -~~~KP-----~p~~-----~~~~~~~l~~~p~~~l~IGDs~-~Di~aA~-~aG~~~i~v~ 195 (229)
T PRK13226 148 -AERKP-----HPLP-----LLVAAERIGVAPTDCVYVGDDE-RDILAAR-AAGMPSVAAL 195 (229)
T ss_pred -CCCCC-----CHHH-----HHHHHHHhCCChhhEEEeCCCH-HHHHHHH-HCCCcEEEEe
Confidence 11111 1112 2356677888889999999995 8988776 4699999983
No 27
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.02 E-value=0.00011 Score=89.16 Aligned_cols=102 Identities=14% Similarity=0.233 Sum_probs=77.2
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCC-CCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 320 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWR-DLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 320 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWr-dyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
.-|.+..+|..|+++|.++.++||+.-.+++.++..+ .|. .|||.||+.-.- +
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~---------gl~~~~Fd~iv~~~~~-----------------~ 215 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAA---------GLPLSMFDAIVSADAF-----------------E 215 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHc---------CCChhHCCEEEECccc-----------------c
Confidence 3588999999999999999999999999999998765 374 899998864311 1
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehHh
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 459 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVpE 459 (624)
..+| ...+| ....+.+|....+++||||.. .||...+ ..||+|++|...
T Consensus 216 ~~KP-----~Pe~~-----~~a~~~lgv~p~e~v~IgDs~-~Di~AA~-~aGm~~I~v~~~ 264 (1057)
T PLN02919 216 NLKP-----APDIF-----LAAAKILGVPTSECVVIEDAL-AGVQAAR-AAGMRCIAVTTT 264 (1057)
T ss_pred cCCC-----CHHHH-----HHHHHHcCcCcccEEEEcCCH-HHHHHHH-HcCCEEEEECCC
Confidence 0111 12344 244666788889999999997 5877776 469999999865
No 28
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.01 E-value=1.2e-05 Score=78.33 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=78.1
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCC
Q 006951 317 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 396 (624)
Q Consensus 317 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~ 396 (624)
.+..-|....+|.+|+++|.++.++||+.-.++...++.+ +|.++||.|++.-.
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~---------~l~~~f~~i~~~~~----------------- 126 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEAL---------GLLPLFDHVIGSDE----------------- 126 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHc---------CChhheeeEEecCc-----------------
Confidence 4566789999999999999999999999999999888755 48999998876311
Q ss_pred CCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 397 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 397 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
.+..+| +..+| ....+.+|....+++||||+. .||..+++ .|+++++|.
T Consensus 127 ~~~~KP-----~~~~~-----~~~~~~~~~~~~~~l~igD~~-~Di~aA~~-~Gi~~i~~~ 175 (205)
T TIGR01454 127 VPRPKP-----APDIV-----REALRLLDVPPEDAVMVGDAV-TDLASARA-AGTATVAAL 175 (205)
T ss_pred CCCCCC-----ChHHH-----HHHHHHcCCChhheEEEcCCH-HHHHHHHH-cCCeEEEEE
Confidence 010111 11122 355566788889999999997 79998876 699999884
No 29
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.96 E-value=2.8e-05 Score=75.61 Aligned_cols=104 Identities=17% Similarity=0.285 Sum_probs=79.1
Q ss_pred cccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeC
Q 006951 316 LFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVT 395 (624)
Q Consensus 316 KYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~ 395 (624)
+.+..-|....+|..|+++|.++.++||+.-.++..+++.+ +|.++||.|++....
T Consensus 82 ~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~~~~~~~~--------------- 137 (213)
T TIGR01449 82 ELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELL---------GLAKYFSVLIGGDSL--------------- 137 (213)
T ss_pred ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc---------CcHhhCcEEEecCCC---------------
Confidence 45566789999999999999999999999999999999865 489999988653211
Q ss_pred CCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 396 GEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 396 ~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
+..+| +..+| ..+.+.+|....+++||||+ ..|+..+++ .|+.+++|.
T Consensus 138 --~~~Kp-----~p~~~-----~~~~~~~~~~~~~~~~igDs-~~d~~aa~~-aG~~~i~v~ 185 (213)
T TIGR01449 138 --AQRKP-----HPDPL-----LLAAERLGVAPQQMVYVGDS-RVDIQAARA-AGCPSVLLT 185 (213)
T ss_pred --CCCCC-----ChHHH-----HHHHHHcCCChhHeEEeCCC-HHHHHHHHH-CCCeEEEEc
Confidence 00011 11122 35566678888899999999 589998876 699999884
No 30
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.90 E-value=0.00028 Score=70.48 Aligned_cols=100 Identities=22% Similarity=0.282 Sum_probs=73.8
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCC
Q 006951 317 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 396 (624)
Q Consensus 317 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~ 396 (624)
....-|.++.+|..|+++|.+++++||-+-.+++.+.... .+.+|||+|+....-| .
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~---------gl~~~F~~i~g~~~~~---~----------- 143 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKAL---------GLADYFDVIVGGDDVP---P----------- 143 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHh---------CCccccceEEcCCCCC---C-----------
Confidence 4566789999999999999999999999999999999974 3889999999822111 0
Q ss_pred CCceeccccCCCCccccCCCH---HHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 397 EGLMRPCFKARTGGLYSGGSA---QMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 397 ~g~l~~~~~l~~G~VYsgGn~---~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
.+ .+. ..+++.+|....+++||||.++ ||...|. .|-.+++|-
T Consensus 144 ---~K-------------P~P~~l~~~~~~~~~~~~~~l~VGDs~~-Di~aA~~-Ag~~~v~v~ 189 (220)
T COG0546 144 ---PK-------------PDPEPLLLLLEKLGLDPEEALMVGDSLN-DILAAKA-AGVPAVGVT 189 (220)
T ss_pred ---CC-------------cCHHHHHHHHHHhCCChhheEEECCCHH-HHHHHHH-cCCCEEEEE
Confidence 00 111 2345556666348999999985 8887765 456666663
No 31
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.90 E-value=2.5e-05 Score=71.17 Aligned_cols=99 Identities=26% Similarity=0.327 Sum_probs=71.3
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCC--------hHHHHHhhcccccccCCCCCCCCCCccEEEEcc--CCCCCCCC
Q 006951 317 FVEPDPELPLALLDQKEAGKKLLLITNSD--------YHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA--RKPEFFQM 386 (624)
Q Consensus 317 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~--------~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A--rKP~FF~e 386 (624)
....-|.+..+|..|+++|.+++++||+. .+++...+..+- .. |+.+++.. .||
T Consensus 23 ~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~---------l~--~~~~~~~~~~~KP----- 86 (132)
T TIGR01662 23 ERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELG---------VP--IDVLYACPHCRKP----- 86 (132)
T ss_pred HheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCC---------CC--EEEEEECCCCCCC-----
Confidence 34556889999999999999999999999 667777776551 11 44444332 111
Q ss_pred CCccEEEeCCCCceeccccCCCCccccCCCHHHHHHHh-CCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 387 SHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSL-NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 387 ~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~ll-g~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
+... ...+++.+ +....+++||||+...||..++. .||+|++|-|
T Consensus 87 ---------------------~~~~-----~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~-~Gi~~i~~~~ 132 (132)
T TIGR01662 87 ---------------------KPGM-----FLEALKRFNEIDPEESVYVGDQDLTDLQAAKR-AGLAFILVAP 132 (132)
T ss_pred ---------------------ChHH-----HHHHHHHcCCCChhheEEEcCCCcccHHHHHH-CCCeEEEeeC
Confidence 1122 24566677 58889999999988899998865 6999999854
No 32
>PRK09449 dUMP phosphatase; Provisional
Probab=97.86 E-value=3.1e-05 Score=76.31 Aligned_cols=103 Identities=19% Similarity=0.322 Sum_probs=75.9
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
+..-|....+|..|+ +|.++.++||+..+.+...+..+ .+.+|||.||+...-
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~---------~l~~~fd~v~~~~~~----------------- 146 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERT---------GLRDYFDLLVISEQV----------------- 146 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhC---------ChHHHcCEEEEECcc-----------------
Confidence 345688999999999 67899999999999999888765 378899999876421
Q ss_pred CceeccccCCCCccccCCCHHHHHHHhCCCC-CcEEEEcCcccccccccccccCceEEeehH
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMIENSLNIHG-DEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G-~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
|..+| ...+| ....+.+|... .+++||||+...||..++. .||+|+.|.+
T Consensus 147 ~~~KP-----~p~~~-----~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~-aG~~~i~~~~ 197 (224)
T PRK09449 147 GVAKP-----DVAIF-----DYALEQMGNPDRSRVLMVGDNLHSDILGGIN-AGIDTCWLNA 197 (224)
T ss_pred CCCCC-----CHHHH-----HHHHHHcCCCCcccEEEEcCCcHHHHHHHHH-CCCcEEEECC
Confidence 11111 11222 34455567654 5899999999999997765 6999999863
No 33
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.82 E-value=2.7e-05 Score=75.61 Aligned_cols=99 Identities=25% Similarity=0.414 Sum_probs=71.2
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
...|....+|.+|+++|.++.++||++... ...+.. -.|.++||.|++... .|
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~---------~~l~~~fd~i~~s~~-----------------~~ 157 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEA---------LGLLEYFDFVVTSYE-----------------VG 157 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHH---------CCcHHhcceEEeecc-----------------cC
Confidence 446789999999999999999999998654 344443 248899999987432 11
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEe
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTAL 455 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~a 455 (624)
..+| ...+| ....+.+|....+++||||....||..++. .||+|++
T Consensus 158 ~~KP-----~~~~~-----~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~-aG~~~i~ 203 (203)
T TIGR02252 158 AEKP-----DPKIF-----QEALERAGISPEEALHIGDSLRNDYQGARA-AGWRALL 203 (203)
T ss_pred CCCC-----CHHHH-----HHHHHHcCCChhHEEEECCCchHHHHHHHH-cCCeeeC
Confidence 1111 11122 345666788889999999999999998865 6999874
No 34
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.78 E-value=3.3e-05 Score=77.45 Aligned_cols=104 Identities=15% Similarity=0.229 Sum_probs=76.2
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
+..-|.+..+|..|+++|.++.++||+...++...+..+ .|.++||.||+...-.
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~---------~l~~~fd~iv~s~~~~---------------- 146 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT---------GLDAHLDLLLSTHTFG---------------- 146 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC---------CcHHHCCEEEEeeeCC----------------
Confidence 345688999999999999999999999999999888764 3999999988654211
Q ss_pred CceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehHh
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 459 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVpE 459 (624)
..+| ...+| ....+.+|....+++||||... ||..++ ..||+|+..|+-
T Consensus 147 -~~KP-----~p~~~-----~~~~~~~~~~p~~~l~igDs~~-di~aA~-~aG~~~~~~v~~ 195 (224)
T PRK14988 147 -YPKE-----DQRLW-----QAVAEHTGLKAERTLFIDDSEP-ILDAAA-QFGIRYCLGVTN 195 (224)
T ss_pred -CCCC-----CHHHH-----HHHHHHcCCChHHEEEEcCCHH-HHHHHH-HcCCeEEEEEeC
Confidence 0011 11122 2455667888889999999985 777665 579998665544
No 35
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.76 E-value=3.6e-05 Score=73.02 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=70.1
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
..-|.+..+|..|+++|.++.++||+.- ...+++.+ .|.++||.||....-+
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~---------~l~~~f~~~~~~~~~~----------------- 138 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKL---------GLIDYFDAIVDPAEIK----------------- 138 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhc---------CcHhhCcEEEehhhcC-----------------
Confidence 3458899999999999999999999853 34444433 4889999988654211
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEee
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 456 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aI 456 (624)
..+| +..+|. ...+.++...++++||||+. .||..++. .||+|++|
T Consensus 139 ~~kp-----~p~~~~-----~~~~~~~~~~~~~v~vgD~~-~di~aA~~-aG~~~i~v 184 (185)
T TIGR01990 139 KGKP-----DPEIFL-----AAAEGLGVSPSECIGIEDAQ-AGIEAIKA-AGMFAVGV 184 (185)
T ss_pred CCCC-----ChHHHH-----HHHHHcCCCHHHeEEEecCH-HHHHHHHH-cCCEEEec
Confidence 0011 122332 35566778888999999996 89988875 69999986
No 36
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.72 E-value=6.4e-05 Score=73.35 Aligned_cols=102 Identities=18% Similarity=0.300 Sum_probs=77.8
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
...|....+|.++++. .++.++||+.-......+..+ .|..+||.|++...- |
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~---------~l~~~fd~i~~~~~~-----------------~ 149 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKS---------GLFPFFDDIFVSEDA-----------------G 149 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHC---------CcHhhcCEEEEcCcc-----------------C
Confidence 4457889999999998 899999999999999888765 488899999885421 1
Q ss_pred ceeccccCCCCccccCCCHHHHHHHh-CCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSL-NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~ll-g~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
..+| ...+| ....+.+ |....+++||||+...||..+++ .||.++.+-+
T Consensus 150 ~~KP-----~~~~~-----~~~~~~~~~~~~~~~v~igD~~~~di~~A~~-~G~~~i~~~~ 199 (224)
T TIGR02254 150 IQKP-----DKEIF-----NYALERMPKFSKEEVLMIGDSLTADIKGGQN-AGLDTCWMNP 199 (224)
T ss_pred CCCC-----CHHHH-----HHHHHHhcCCCchheEEECCCcHHHHHHHHH-CCCcEEEECC
Confidence 1111 12233 2445556 88888999999999899998876 5999999854
No 37
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.71 E-value=8e-05 Score=72.91 Aligned_cols=107 Identities=23% Similarity=0.369 Sum_probs=81.0
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCC
Q 006951 317 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 396 (624)
Q Consensus 317 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~ 396 (624)
.+..-|++...|.++++. .+|.++||..-........-+ | ..++||.|++....
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~-------g--l~~~Fd~v~~s~~~---------------- 150 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQL-------G--LLDYFDAVFISEDV---------------- 150 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHc-------C--ChhhhheEEEeccc----------------
Confidence 345567788888888777 889999999888888777755 3 78999999986543
Q ss_pred CCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehHhhH
Q 006951 397 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELE 461 (624)
Q Consensus 397 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVpELe 461 (624)
|..+| ...+| ..+++.+|....++|+|||++..||..++. .||+|+.|.++-.
T Consensus 151 -g~~KP-----~~~~f-----~~~~~~~g~~p~~~l~VgD~~~~di~gA~~-~G~~~vwi~~~~~ 203 (229)
T COG1011 151 -GVAKP-----DPEIF-----EYALEKLGVPPEEALFVGDSLENDILGARA-LGMKTVWINRGGK 203 (229)
T ss_pred -ccCCC-----CcHHH-----HHHHHHcCCCcceEEEECCChhhhhHHHHh-cCcEEEEECCCCC
Confidence 22222 12344 356778888888999999999999987765 6999998876543
No 38
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.65 E-value=8.6e-05 Score=64.79 Aligned_cols=113 Identities=25% Similarity=0.314 Sum_probs=80.4
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
+...|.+..+|.+|+++|.+++++||+...++...+..+ .+..+|+.|+.....+.+-.......
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~------ 87 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL---------GLDDYFDPVITSNGAAIYYPKEGLFL------ 87 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc---------CCchhhhheeccchhhhhcccccccc------
Confidence 455678999999999999999999999999998888764 26688998887776654433221110
Q ss_pred CceeccccCCCCcccc----CCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEee
Q 006951 398 GLMRPCFKARTGGLYS----GGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 456 (624)
Q Consensus 398 g~l~~~~~l~~G~VYs----gGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aI 456 (624)
+ ...++. .+....+.+.++....+++||||+. +|+...+. .||+|++|
T Consensus 88 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~-~d~~~~~~-~g~~~i~v 139 (139)
T cd01427 88 G---------GGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSL-NDIEMAKA-AGGLGVAV 139 (139)
T ss_pred c---------ccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCH-HHHHHHHH-cCCceeeC
Confidence 0 011111 1222355666777788999999999 99988874 59999875
No 39
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.63 E-value=9.3e-05 Score=70.25 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=74.5
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCC
Q 006951 317 FVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 396 (624)
Q Consensus 317 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~ 396 (624)
.+...|.+..+|..|+++|.++.++||+ ..++.+++.+ .|.+|||.|+.....+
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~---------~l~~~f~~v~~~~~~~--------------- 139 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL---------GLTDYFDAIVDADEVK--------------- 139 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc---------ChHHHCCEeeehhhCC---------------
Confidence 3667889999999999999999999999 6677777754 4889999998753211
Q ss_pred CCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEee
Q 006951 397 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 456 (624)
Q Consensus 397 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aI 456 (624)
..+| ...+| ....+-+|...++++||||.. .||..++. .||+|++|
T Consensus 140 --~~kp-----~~~~~-----~~~~~~~~~~~~~~v~IgD~~-~di~aA~~-~G~~~i~v 185 (185)
T TIGR02009 140 --EGKP-----HPETF-----LLAAELLGVSPNECVVFEDAL-AGVQAARA-AGMFAVAV 185 (185)
T ss_pred --CCCC-----ChHHH-----HHHHHHcCCCHHHeEEEeCcH-hhHHHHHH-CCCeEeeC
Confidence 0011 11233 345666788888999999995 79998876 59999875
No 40
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.62 E-value=0.00015 Score=73.47 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=75.6
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEE--ccCCCCCCCCCCccEEEeCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIV--SARKPEFFQMSHPLYEVVTG 396 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv--~ArKP~FF~e~~pf~~v~~~ 396 (624)
..-|++..+|.+|+++|.++.++||++-..+..++.+.-. .++.+|||.++. -+.||
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~------~~L~~~f~~~fd~~~g~KP--------------- 153 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDA------GNLTPYFSGYFDTTVGLKT--------------- 153 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccc------cchhhhcceEEEeCcccCC---------------
Confidence 4457899999999999999999999999999998887531 246666664321 01122
Q ss_pred CCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehHh
Q 006951 397 EGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 459 (624)
Q Consensus 397 ~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVpE 459 (624)
.... ...+.+.+|....++|||||+. .||..++. .||+|+++++.
T Consensus 154 -----------~p~~-----y~~i~~~lgv~p~e~lfVgDs~-~Di~AA~~-AG~~ti~v~r~ 198 (220)
T TIGR01691 154 -----------EAQS-----YVKIAGQLGSPPREILFLSDII-NELDAARK-AGLHTGQLVRP 198 (220)
T ss_pred -----------CHHH-----HHHHHHHhCcChhHEEEEeCCH-HHHHHHHH-cCCEEEEEECC
Confidence 1122 3456677788889999999995 88887765 79999999764
No 41
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.58 E-value=0.00011 Score=70.59 Aligned_cols=102 Identities=21% Similarity=0.367 Sum_probs=72.1
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
+...|.+..+|.+|+ +++.++||++-..+...+..+ .+.++||.|++...-..-.
T Consensus 83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~---------gl~~~fd~i~~~~~~~~~~------------- 137 (184)
T TIGR01993 83 LKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRL---------GIEDCFDGIFCFDTANPDY------------- 137 (184)
T ss_pred CCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHc---------CcHhhhCeEEEeecccCcc-------------
Confidence 446678888999987 469999999999999888865 3889999988865321100
Q ss_pred CceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEee
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALI 456 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aI 456 (624)
+..+| ...+| ....+.+|....+++||||+. .||..+++ .|++|++|
T Consensus 138 ~~~KP-----~p~~~-----~~~~~~~~~~~~~~l~vgD~~-~di~aA~~-~G~~~i~v 184 (184)
T TIGR01993 138 LLPKP-----SPQAY-----EKALREAGVDPERAIFFDDSA-RNIAAAKA-LGMKTVLV 184 (184)
T ss_pred CCCCC-----CHHHH-----HHHHHHhCCCccceEEEeCCH-HHHHHHHH-cCCEEeeC
Confidence 00011 11233 345566788889999999997 58777765 69999875
No 42
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.53 E-value=0.00051 Score=70.62 Aligned_cols=105 Identities=22% Similarity=0.385 Sum_probs=71.3
Q ss_pred cccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEE
Q 006951 314 PELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEV 393 (624)
Q Consensus 314 peKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v 393 (624)
|+-|..-++.. .+|+++|+.|.+|-++||=+..+- ...=.+ .=..|||.||+++.-
T Consensus 109 ~~~~~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~--~~l~~~--------~l~~~fD~vv~S~e~------------- 164 (237)
T KOG3085|consen 109 PSAWKYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR--LLLLPL--------GLSAYFDFVVESCEV------------- 164 (237)
T ss_pred ccCceeccHHH-HHHHHHHhCCeEEEEecCCcHHHH--HHhhcc--------CHHHhhhhhhhhhhh-------------
Confidence 44444445544 899999999954544444444443 222111 234899999987632
Q ss_pred eCCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 394 VTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 394 ~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
|..+| -.+||+ ..++.+|..-.+|+++||..-.|+..++. .||+|.+|.
T Consensus 165 ----g~~KP-----Dp~If~-----~al~~l~v~Pee~vhIgD~l~nD~~gA~~-~G~~ailv~ 213 (237)
T KOG3085|consen 165 ----GLEKP-----DPRIFQ-----LALERLGVKPEECVHIGDLLENDYEGARN-LGWHAILVD 213 (237)
T ss_pred ----ccCCC-----ChHHHH-----HHHHHhCCChHHeEEecCccccccHhHHH-cCCEEEEEc
Confidence 32222 235663 56788888888999999999999998875 699999997
No 43
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.52 E-value=0.00013 Score=70.29 Aligned_cols=95 Identities=23% Similarity=0.290 Sum_probs=65.7
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCC-hHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 320 PDPELPLALLDQKEAGKKLLLITNSD-YHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 320 kdp~l~~~L~~lr~~GKKlFLiTNS~-~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
.-|.+..+|.+|++.|.+++++||++ -..+..+...+ + +..+ ....||
T Consensus 44 ~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~-g--------l~~~-----~~~~KP----------------- 92 (170)
T TIGR01668 44 AYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL-G--------IPVL-----PHAVKP----------------- 92 (170)
T ss_pred cChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc-C--------CEEE-----cCCCCC-----------------
Confidence 34678899999999999999999998 45554443322 1 2111 011122
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehHhh
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 460 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVpEL 460 (624)
++. -....++.+|...++++||||+++.||..++. .||+|++|-+.-
T Consensus 93 ---------~p~-----~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~-aGi~~i~v~~g~ 139 (170)
T TIGR01668 93 ---------PGC-----AFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNR-NGSYTILVEPLV 139 (170)
T ss_pred ---------ChH-----HHHHHHHHcCCCHHHEEEECCcchHHHHHHHH-cCCeEEEEccCc
Confidence 111 22345666788889999999999999998875 699999996654
No 44
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.49 E-value=0.00034 Score=72.34 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=76.5
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
...-|.+..+|..|+++|.++.++||++-.+...++..+ .|..+||.|++...-
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~---------~i~~~f~~i~~~d~~----------------- 153 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM---------KIGRYFRWIIGGDTL----------------- 153 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc---------CcHhhCeEEEecCCC-----------------
Confidence 344588999999999999999999999998888887754 378899987664210
Q ss_pred CceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
+..+| + ..-...+.+.+|....+++||||+ ..||...+. .||+|++|.
T Consensus 154 ~~~Kp-----~-----p~~~~~~~~~~g~~~~~~l~IGD~-~~Di~aA~~-aGi~~i~v~ 201 (272)
T PRK13223 154 PQKKP-----D-----PAALLFVMKMAGVPPSQSLFVGDS-RSDVLAAKA-AGVQCVALS 201 (272)
T ss_pred CCCCC-----C-----cHHHHHHHHHhCCChhHEEEECCC-HHHHHHHHH-CCCeEEEEe
Confidence 00011 1 112335666778888999999999 599998876 699999984
No 45
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.49 E-value=0.0002 Score=74.76 Aligned_cols=105 Identities=11% Similarity=0.155 Sum_probs=77.0
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
+..-|.+..+|..|++.|.++.++||+.-.+.+.++..+.+ ..|.++|++| .... .
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~------~~~~~~~~~v-~~~~-----------------~ 198 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLG------PERAQGLDVF-AGDD-----------------V 198 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcc------ccccCceEEE-eccc-----------------c
Confidence 34567899999999999999999999999999999887642 4577788876 2210 0
Q ss_pred CceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
+..+| ...+ .....+.+|....+++||||.+ .||..++. .||++++|..
T Consensus 199 ~~~KP-----~p~~-----~~~a~~~~~~~p~~~l~IGDs~-~Di~aA~~-aG~~~i~v~~ 247 (286)
T PLN02779 199 PKKKP-----DPDI-----YNLAAETLGVDPSRCVVVEDSV-IGLQAAKA-AGMRCIVTKS 247 (286)
T ss_pred CCCCC-----CHHH-----HHHHHHHhCcChHHEEEEeCCH-HhHHHHHH-cCCEEEEEcc
Confidence 11111 0112 2345667788889999999998 69998876 6999998854
No 46
>PLN02811 hydrolase
Probab=97.41 E-value=0.00035 Score=69.34 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=67.6
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHH-hhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCc
Q 006951 321 DPELPLALLDQKEAGKKLLLITNSDYHYTDK-MMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 399 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~-vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~ 399 (624)
-|.+..+|..|+++|.++.++||+.-.+... ...+ ..|.++||.|++... |. + +.
T Consensus 80 ~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~---------~~l~~~f~~i~~~~~-~~----------~----~~ 135 (220)
T PLN02811 80 MPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRH---------GELFSLMHHVVTGDD-PE----------V----KQ 135 (220)
T ss_pred CccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHccc---------HHHHhhCCEEEECCh-hh----------c----cC
Confidence 4788999999999999999999998765443 3332 138899998887541 00 0 00
Q ss_pred eeccccCCCCccccCCCHHHHHHHh---CCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 400 MRPCFKARTGGLYSGGSAQMIENSL---NIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 400 l~~~~~l~~G~VYsgGn~~~l~~ll---g~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
.+| ...+|. ...+.+ |....+++||||+. .|+..++. .|++|++|-
T Consensus 136 ~KP-----~p~~~~-----~a~~~~~~~~~~~~~~v~IgDs~-~di~aA~~-aG~~~i~v~ 184 (220)
T PLN02811 136 GKP-----APDIFL-----AAARRFEDGPVDPGKVLVFEDAP-SGVEAAKN-AGMSVVMVP 184 (220)
T ss_pred CCC-----CcHHHH-----HHHHHhCCCCCCccceEEEeccH-hhHHHHHH-CCCeEEEEe
Confidence 011 122331 222333 36678999999998 58877765 699999984
No 47
>PLN02954 phosphoserine phosphatase
Probab=97.34 E-value=0.0045 Score=61.00 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=34.0
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006951 320 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 320 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 356 (624)
..|.+..+|..++++|.++.++||+.-.++..++..+
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~ 121 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL 121 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh
Confidence 4588999999999999999999999999999998865
No 48
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.30 E-value=0.00049 Score=67.54 Aligned_cols=109 Identities=15% Similarity=0.093 Sum_probs=71.3
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCC-ChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCc
Q 006951 321 DPELPLALLDQKEAGKKLLLITNS-DYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 399 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTNS-~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~ 399 (624)
-|....+|+.|+++|.+++++||+ .-.++..+|.++--...+.....-++||.||+.. +| +.
T Consensus 47 ~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~-~~----------------~~ 109 (174)
T TIGR01685 47 IKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIY-KP----------------NK 109 (174)
T ss_pred cccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeecc-CC----------------ch
Confidence 478899999999999999999999 9999999998762000001112228999998853 22 00
Q ss_pred eeccccCCCCccccCCCHHHHHHHh--CCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 400 MRPCFKARTGGLYSGGSAQMIENSL--NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 400 l~~~~~l~~G~VYsgGn~~~l~~ll--g~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
..+. ..+ +..+.+.. |..-.+++||||... ||...+ ..|++|++|..
T Consensus 110 ~kp~-----~~i-----~~~~~~~~~~gl~p~e~l~VgDs~~-di~aA~-~aGi~~i~v~~ 158 (174)
T TIGR01685 110 AKQL-----EMI-----LQKVNKVDPSVLKPAQILFFDDRTD-NVREVW-GYGVTSCYCPS 158 (174)
T ss_pred HHHH-----HHH-----HHHhhhcccCCCCHHHeEEEcChhH-hHHHHH-HhCCEEEEcCC
Confidence 0000 001 11222333 566789999999994 566554 67999999843
No 49
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.28 E-value=0.00037 Score=70.31 Aligned_cols=99 Identities=25% Similarity=0.349 Sum_probs=69.8
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
+..-|.+..+|.+|++. .++.++||++.. ++. ..+.+|||.||+...-
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~---------~gl~~~fd~i~~~~~~----------------- 159 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PEL---------FGLGDYFEFVLRAGPH----------------- 159 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHH---------CCcHHhhceeEecccC-----------------
Confidence 45568899999999875 679999998764 221 2488999998865421
Q ss_pred CceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehHh
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 459 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVpE 459 (624)
+..+| +..+| ....+.+|....+++||||++..||..++. .||+|+.|-+.
T Consensus 160 ~~~KP-----~p~~~-----~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~-aG~~~i~v~~~ 210 (238)
T PRK10748 160 GRSKP-----FSDMY-----HLAAEKLNVPIGEILHVGDDLTTDVAGAIR-CGMQACWINPE 210 (238)
T ss_pred CcCCC-----cHHHH-----HHHHHHcCCChhHEEEEcCCcHHHHHHHHH-CCCeEEEEcCC
Confidence 00011 11222 233455688888999999999999998875 79999998653
No 50
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.12 E-value=0.00089 Score=64.57 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=71.2
Q ss_pred ccccCCCchHHHHHHHHhCCeEEEEeCCC---------------hHHHHHhhcccccccCCCCCCCCCCccEEEEccCCC
Q 006951 317 FVEPDPELPLALLDQKEAGKKLLLITNSD---------------YHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKP 381 (624)
Q Consensus 317 YI~kdp~l~~~L~~lr~~GKKlFLiTNS~---------------~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP 381 (624)
.+..-|.+..+|.+|+++|.+++++||.. ..+++.+...+ ++. ||-+++.+.+|
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~---------gl~--fd~ii~~~~~~ 95 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ---------GII--FDDVLICPHFP 95 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC---------CCc--eeEEEECCCCC
Confidence 35566889999999999999999999963 44555554433 243 87666654443
Q ss_pred CCCCCCCccEEEeCCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 382 EFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 382 ~FF~e~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
. + +.+..+| + -+-+..+.+.+|....+++||||. ..|+..++. .||.+++|-+
T Consensus 96 ~---~---------~~~~~KP-----~-----~~~~~~~~~~~~~~~~e~l~IGD~-~~Di~~A~~-aGi~~i~~~~ 148 (161)
T TIGR01261 96 D---D---------NCDCRKP-----K-----IKLLEPYLKKNLIDKARSYVIGDR-ETDMQLAEN-LGIRGIQYDE 148 (161)
T ss_pred C---C---------CCCCCCC-----C-----HHHHHHHHHHcCCCHHHeEEEeCC-HHHHHHHHH-CCCeEEEECh
Confidence 1 0 0011111 0 122345556667777899999998 679998774 6999999864
No 51
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.11 E-value=0.00061 Score=63.89 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=64.0
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCCh---------------HHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDY---------------HYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEF 383 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~---------------~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~F 383 (624)
...|.+..+|..|+++|.++.++||.+. ..+..+++.+ .+. |+.++.....|.
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~--~~~~~~~~~~~~- 94 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQL---------GVA--VDGVLFCPHHPA- 94 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhC---------CCc--eeEEEECCCCCC-
Confidence 3468899999999999999999999873 3444444433 121 111111111000
Q ss_pred CCCCCccEEEeCCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 384 FQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 384 F~e~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
...+..+| +..+ ...+.+.+|....+++||||+ ..||..++ ..||+|++|.
T Consensus 95 -----------~~~~~~KP-----~~~~-----~~~~~~~~~~~~~e~i~IGDs-~~Di~~A~-~~Gi~~v~i~ 145 (147)
T TIGR01656 95 -----------DNCSCRKP-----KPGL-----ILEALKRLGVDASRSLVVGDR-LRDLQAAR-NAGLAAVLLV 145 (147)
T ss_pred -----------CCCCCCCC-----CHHH-----HHHHHHHcCCChHHEEEEcCC-HHHHHHHH-HCCCCEEEec
Confidence 00000011 1111 335566678888899999999 88998886 5799999985
No 52
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.02 E-value=0.00094 Score=61.90 Aligned_cols=86 Identities=26% Similarity=0.366 Sum_probs=62.2
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCcee
Q 006951 322 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMR 401 (624)
Q Consensus 322 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~l~ 401 (624)
|.+..+|..|++.|.++.++||+....+...+.+.+ .++|+.|++... + + -+
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~l----------~~~f~~i~~~~~-~----------------~-~K 118 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKHL----------GDYFDLILGSDE-F----------------G-AK 118 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHHH----------HhcCcEEEecCC-C----------------C-CC
Confidence 678999999999999999999999999999988753 246888775321 0 0 00
Q ss_pred ccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccccccccc
Q 006951 402 PCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKV 447 (624)
Q Consensus 402 ~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk 447 (624)
| ++.. ...+++.+|... +++||||+ -.|+..++.
T Consensus 119 p-----~~~~-----~~~~~~~~~~~~-~~l~iGDs-~~Di~aa~~ 152 (154)
T TIGR01549 119 P-----EPEI-----FLAALESLGLPP-EVLHVGDN-LNDIEGARN 152 (154)
T ss_pred c-----CHHH-----HHHHHHHcCCCC-CEEEEeCC-HHHHHHHHH
Confidence 1 0111 234566678877 99999999 678876653
No 53
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=96.97 E-value=0.001 Score=65.17 Aligned_cols=93 Identities=28% Similarity=0.408 Sum_probs=66.1
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccE-EEEccCCCCCCCCCCccEEEeCCCCc
Q 006951 321 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNM-VIVSARKPEFFQMSHPLYEVVTGEGL 399 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDv-VIv~ArKP~FF~e~~pf~~v~~~~g~ 399 (624)
-|++..|+..+|++|-|+++++|-.=.=+.. |-.-||| -|-.|+||- +
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~---------------~~~~l~v~fi~~A~KP~---------------~- 96 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVAR---------------AAEKLGVPFIYRAKKPF---------------G- 96 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHh---------------hhhhcCCceeecccCcc---------------H-
Confidence 4789999999999999999999954333322 2222232 244788881 0
Q ss_pred eeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehHhh
Q 006951 400 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 460 (624)
Q Consensus 400 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVpEL 460 (624)
=......+-++..-++|+.|||.|+.||+..+. .|.||++|.|=-
T Consensus 97 ---------------~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr-~G~~tIlV~Pl~ 141 (175)
T COG2179 97 ---------------RAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNR-AGMRTILVEPLV 141 (175)
T ss_pred ---------------HHHHHHHHHcCCChhHEEEEcchhhhhhhcccc-cCcEEEEEEEec
Confidence 011233455677789999999999999998874 799999998843
No 54
>PRK06769 hypothetical protein; Validated
Probab=96.95 E-value=0.0011 Score=64.23 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=61.6
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChH---------HHHHhhcccccccCCCCCCCCCCccEEEE-----ccCCCCCCC
Q 006951 320 PDPELPLALLDQKEAGKKLLLITNSDYH---------YTDKMMQHSFNRFLPNDMGWRDLFNMVIV-----SARKPEFFQ 385 (624)
Q Consensus 320 kdp~l~~~L~~lr~~GKKlFLiTNS~~~---------Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv-----~ArKP~FF~ 385 (624)
.-|....+|.+|++.|.+++++||+.-. +... +... | +.++|+.++. ..+||
T Consensus 29 ~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~-l~~~-------g--~~~~~~~~~~~~~~~~~~KP---- 94 (173)
T PRK06769 29 LFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQE-LKGF-------G--FDDIYLCPHKHGDGCECRKP---- 94 (173)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHH-HHhC-------C--cCEEEECcCCCCCCCCCCCC----
Confidence 4588999999999999999999999742 2221 2211 1 1122211110 01122
Q ss_pred CCCccEEEeCCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 386 MSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 386 e~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
. -+-.....+.+|..-.+++||||.. .|+..++. .||++++|-+
T Consensus 95 ----------------------~-----p~~~~~~~~~l~~~p~~~i~IGD~~-~Di~aA~~-aGi~~i~v~~ 138 (173)
T PRK06769 95 ----------------------S-----TGMLLQAAEKHGLDLTQCAVIGDRW-TDIVAAAK-VNATTILVRT 138 (173)
T ss_pred ----------------------C-----HHHHHHHHHHcCCCHHHeEEEcCCH-HHHHHHHH-CCCeEEEEec
Confidence 0 1222345555777778999999997 89998875 6999999965
No 55
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=96.86 E-value=0.0026 Score=70.56 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=72.1
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
..-|....+|..|++.|.++.++||+.-.++...++++ +|.+|||.|++.-.-+ +
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~---------~l~~~f~~i~~~d~v~----------------~ 384 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYY---------DLDQWVTETFSIEQIN----------------S 384 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHC---------CcHhhcceeEecCCCC----------------C
Confidence 44588999999999999999999999999999999865 4899999988643100 0
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
. + |+.+| ....+- ...++++||||+. .||...|. .|++|++|-.
T Consensus 385 ~--~-----kP~~~-----~~al~~--l~~~~~v~VGDs~-~Di~aAk~-AG~~~I~v~~ 428 (459)
T PRK06698 385 L--N-----KSDLV-----KSILNK--YDIKEAAVVGDRL-SDINAAKD-NGLIAIGCNF 428 (459)
T ss_pred C--C-----CcHHH-----HHHHHh--cCcceEEEEeCCH-HHHHHHHH-CCCeEEEEeC
Confidence 0 0 11111 111111 2346899999997 99988865 6999999854
No 56
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.84 E-value=0.001 Score=61.32 Aligned_cols=84 Identities=20% Similarity=0.206 Sum_probs=62.4
Q ss_pred CCchHHHHHHHHhCCeEEEEeCC-ChHHHHHhhcccccccCCCC--CCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 322 PELPLALLDQKEAGKKLLLITNS-DYHYTDKMMQHSFNRFLPND--MGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 322 p~l~~~L~~lr~~GKKlFLiTNS-~~~Ytn~vM~Yl~~~~l~~g--~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
|.+..+|+.|+++|.++.++||+ .-.++..+++..-. .+ ..+.++||.+++...||
T Consensus 32 ~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~----~~~i~~l~~~f~~~~~~~~~p----------------- 90 (128)
T TIGR01681 32 KEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFED----FGIIFPLAEYFDPLTIGYWLP----------------- 90 (128)
T ss_pred HHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccc----cccchhhHhhhhhhhhcCCCc-----------------
Confidence 57888999999999999999999 89999998876420 00 01688999988775554
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhC--CCCCcEEEEcCcccc
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLN--IHGDEILYVGDHIYT 440 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg--~~G~~VLYfGDHIy~ 440 (624)
++.. .....+.+| +..++++||||....
T Consensus 91 ---------kp~~-----~~~a~~~lg~~~~p~~~l~igDs~~n 120 (128)
T TIGR01681 91 ---------KSPR-----LVEIALKLNGVLKPKSILFVDDRPDN 120 (128)
T ss_pred ---------HHHH-----HHHHHHHhcCCCCcceEEEECCCHhH
Confidence 1112 234566678 888999999998753
No 57
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.80 E-value=0.0024 Score=61.68 Aligned_cols=108 Identities=24% Similarity=0.323 Sum_probs=65.4
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCCh----HHHH-------HhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCC
Q 006951 320 PDPELPLALLDQKEAGKKLLLITNSDY----HYTD-------KMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSH 388 (624)
Q Consensus 320 kdp~l~~~L~~lr~~GKKlFLiTNS~~----~Ytn-------~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~ 388 (624)
.-|....+|.+|++.|.++.++||++- .|+. .-+..++.. ..+ +||-|++...-+.
T Consensus 30 ~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~g~--~f~~i~~~~~~~~------ 96 (181)
T PRK08942 30 PIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLAD-----RGG--RLDGIYYCPHHPE------ 96 (181)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH-----cCC--ccceEEECCCCCC------
Confidence 457899999999999999999999973 1221 112222320 112 4776664322100
Q ss_pred ccEEEeCCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 389 PLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 389 pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
.+.+..+| ...+| ....+.+|....+++||||+. .||..++. .||++++|-.
T Consensus 97 ------~~~~~~KP-----~p~~~-----~~~~~~l~~~~~~~~~VgDs~-~Di~~A~~-aG~~~i~v~~ 148 (181)
T PRK08942 97 ------DGCDCRKP-----KPGML-----LSIAERLNIDLAGSPMVGDSL-RDLQAAAA-AGVTPVLVRT 148 (181)
T ss_pred ------CCCcCCCC-----CHHHH-----HHHHHHcCCChhhEEEEeCCH-HHHHHHHH-CCCeEEEEcC
Confidence 00011111 11122 245566788889999999997 59988875 6998888743
No 58
>PRK11590 hypothetical protein; Provisional
Probab=96.78 E-value=0.042 Score=54.56 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=62.1
Q ss_pred ccCCCchHHH-HHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 319 EPDPELPLAL-LDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 319 ~kdp~l~~~L-~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
..-|.....| ..+++.|.++.++|||+-.|+..++.++- |..-..+ | .+ +. ++ ..+
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~---------~~~~~~~-i-~t-~l----------~~-~~t 151 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP---------WLPRVNL-I-AS-QM----------QR-RYG 151 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc---------ccccCce-E-EE-EE----------EE-EEc
Confidence 3467888899 46788899999999999999999999762 5443333 3 22 22 11 123
Q ss_pred CceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccccc
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVS 443 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl 443 (624)
|.+. ....|-.|=+..+.+.+|......-..|||+ +|+-
T Consensus 152 g~~~------g~~c~g~~K~~~l~~~~~~~~~~~~aY~Ds~-~D~p 190 (211)
T PRK11590 152 GWVL------TLRCLGHEKVAQLERKIGTPLRLYSGYSDSK-QDNP 190 (211)
T ss_pred cEEC------CccCCChHHHHHHHHHhCCCcceEEEecCCc-ccHH
Confidence 4332 1224445555667777775555556779999 8874
No 59
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.43 E-value=0.007 Score=65.72 Aligned_cols=105 Identities=21% Similarity=0.281 Sum_probs=66.9
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCC---------------ChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNS---------------DYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPE 382 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS---------------~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~ 382 (624)
+...|.+..+|..|+++|.+++++||. +-.++..++... .+ +||-|++....|
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~---------gl--~fd~i~i~~~~~- 96 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQ---------GI--KFDEVLICPHFP- 96 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHc---------CC--ceeeEEEeCCcC-
Confidence 556788999999999999999999995 122333233321 23 377776665433
Q ss_pred CCCCCCccEEEeCCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 383 FFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 383 FF~e~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
.+. .+.-+| .-+-+....+.++....+++||||.. +|+..++. .||++++|=
T Consensus 97 --sd~---------~~~rKP----------~p~~l~~a~~~l~v~~~~svmIGDs~-sDi~aAk~-aGi~~I~v~ 148 (354)
T PRK05446 97 --EDN---------CSCRKP----------KTGLVEEYLAEGAIDLANSYVIGDRE-TDVQLAEN-MGIKGIRYA 148 (354)
T ss_pred --ccc---------CCCCCC----------CHHHHHHHHHHcCCCcccEEEEcCCH-HHHHHHHH-CCCeEEEEE
Confidence 100 000011 01123344455677789999999985 89998875 699999983
No 60
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.35 E-value=0.0082 Score=57.86 Aligned_cols=113 Identities=21% Similarity=0.230 Sum_probs=65.3
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCCh----HHHHHh-------hcccccccCCCCCCCCCCccEEEEccCCCCCCCCCC
Q 006951 320 PDPELPLALLDQKEAGKKLLLITNSDY----HYTDKM-------MQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSH 388 (624)
Q Consensus 320 kdp~l~~~L~~lr~~GKKlFLiTNS~~----~Ytn~v-------M~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~ 388 (624)
.-|.+..+|.+|+++|.++.++||++- .|+... |..++. ..+-. ||.|+....-|.- .
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~-~~~i~~~~~~~~~----~ 95 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLA------ERDVD-LDGIYYCPHHPEG----V 95 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHH------HcCCC-ccEEEECCCCCcc----c
Confidence 357899999999999999999999983 233221 112221 11112 6666654322210 0
Q ss_pred ccEEEeCCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 389 PLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 389 pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
+ ++..+.+..+| +..+| ....+.+|....+++||||.. .||...+. .||+|+..|
T Consensus 96 ~--~~~~~~~~~KP-----~p~~~-----~~a~~~~~~~~~~~v~VGDs~-~Di~aA~~-aG~~~~i~v 150 (176)
T TIGR00213 96 E--EFRQVCDCRKP-----KPGML-----LQARKELHIDMAQSYMVGDKL-EDMQAGVA-AKVKTNVLV 150 (176)
T ss_pred c--cccCCCCCCCC-----CHHHH-----HHHHHHcCcChhhEEEEcCCH-HHHHHHHH-CCCcEEEEE
Confidence 0 00001111111 11232 355666788889999999986 69987765 699995444
No 61
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.34 E-value=0.0073 Score=58.44 Aligned_cols=103 Identities=18% Similarity=0.300 Sum_probs=64.3
Q ss_pred CcccccccCCCchHHHHHHHHhCCeEEEEeCCChH------------HHHHhhcccccccCCCCCCCCCCccEEEEccCC
Q 006951 313 KPELFVEPDPELPLALLDQKEAGKKLLLITNSDYH------------YTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARK 380 (624)
Q Consensus 313 npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~------------Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArK 380 (624)
+|++....-|.+..+|.+|+++|.++.++||.+-. .+..++..+ | +. +|.+|+.. .
T Consensus 36 ~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~-------g--l~--~~~ii~~~-~ 103 (166)
T TIGR01664 36 SASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL-------K--VP--IQVLAATH-A 103 (166)
T ss_pred ChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc-------C--CC--EEEEEecC-C
Confidence 45555444578999999999999999999998753 344445543 2 32 24444432 1
Q ss_pred CCCCCCCCccEEEeCCCCceeccccCCCCccccCCCHHHHHHHhC--CCCCcEEEEcCcc-------cccccccccccCc
Q 006951 381 PEFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLN--IHGDEILYVGDHI-------YTDVSQSKVHLRW 451 (624)
Q Consensus 381 P~FF~e~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg--~~G~~VLYfGDHI-------y~DIl~sKk~~gW 451 (624)
... -+| + .+....+.+.+| ....+++||||.. -.|+..++. .|+
T Consensus 104 -~~~---------------~KP-----~-----p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~-aGi 156 (166)
T TIGR01664 104 -GLY---------------RKP-----M-----TGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKN-LGL 156 (166)
T ss_pred -CCC---------------CCC-----c-----cHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHH-CCC
Confidence 000 001 0 112334555566 6778999999986 389988875 577
Q ss_pred eEE
Q 006951 452 RTA 454 (624)
Q Consensus 452 RT~ 454 (624)
.++
T Consensus 157 ~~~ 159 (166)
T TIGR01664 157 EFK 159 (166)
T ss_pred CcC
Confidence 764
No 62
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=96.29 E-value=0.018 Score=55.20 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=69.5
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
...|....+|..|+++|.+++++||+.-.++..++..+ | ...+|+.++.... -+++.. .+....
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-------g--~~~~~~~~~~~~~-~g~~~p-~~~~~~----- 143 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL-------N--PDYVYSNELVFDE-KGFIQP-DGIVRV----- 143 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh-------C--CCeEEEEEEEEcC-CCeEec-ceeeEE-----
Confidence 34678899999999999999999999999999999876 2 3456765554321 111110 011000
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEe
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTAL 455 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~a 455 (624)
.+ ..|+ .-...+.+.+|....+++||||++ .|+-..+. .||..++
T Consensus 144 --~~---~~k~-----~~~~~~~~~~~~~~~~~i~iGDs~-~D~~~a~~-ag~~~a~ 188 (201)
T TIGR01491 144 --TF---DNKG-----EAVERLKRELNPSLTETVAVGDSK-NDLPMFEV-ADISISL 188 (201)
T ss_pred --cc---ccHH-----HHHHHHHHHhCCCHHHEEEEcCCH-hHHHHHHh-cCCeEEE
Confidence 00 0011 112344555677778999999995 69887765 5885544
No 63
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=96.21 E-value=0.12 Score=55.43 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=65.8
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
+...|....+|..+++.|.++.++||+...|++.++..+ + +|-++.+ .+++. .
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~L-g------------ld~~~an------------~lei~--d 232 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKL-R------------LDAAVAN------------ELEIM--D 232 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHc-C------------CCeEEEe------------EEEEE--C
Confidence 345678888999999999999999999999988877753 2 1222221 11221 2
Q ss_pred CceeccccCCCC-ccccCCCHHHH---HHHhCCCCCcEEEEcCcccccccccccccCceEE
Q 006951 398 GLMRPCFKARTG-GLYSGGSAQMI---ENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTA 454 (624)
Q Consensus 398 g~l~~~~~l~~G-~VYsgGn~~~l---~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~ 454 (624)
|.+.... .| .+...+....+ .+-+|....++++|||.. .|+.-.+. .|.-.+
T Consensus 233 g~ltg~v---~g~iv~~k~K~~~L~~la~~lgi~~~qtIaVGDg~-NDl~m~~~-AGlgiA 288 (322)
T PRK11133 233 GKLTGNV---LGDIVDAQYKADTLTRLAQEYEIPLAQTVAIGDGA-NDLPMIKA-AGLGIA 288 (322)
T ss_pred CEEEeEe---cCccCCcccHHHHHHHHHHHcCCChhhEEEEECCH-HHHHHHHH-CCCeEE
Confidence 2221100 01 12233445444 445677778999999999 89987654 465443
No 64
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.99 E-value=0.0021 Score=66.08 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=68.0
Q ss_pred CchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEcc-CCCCCCCCCCccEEEeCCCCcee
Q 006951 323 ELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA-RKPEFFQMSHPLYEVVTGEGLMR 401 (624)
Q Consensus 323 ~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A-rKP~FF~e~~pf~~v~~~~g~l~ 401 (624)
.+...+..|++.|+++|+.||.+-.|....... ..+-.+|+.|.... ++|.++....
T Consensus 124 ~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~---------~g~g~~~~~i~~~~~~~~~~~gKP~------------- 181 (257)
T TIGR01458 124 ILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLA---------LDVGPFVTALEYATDTKATVVGKPS------------- 181 (257)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCC---------CCchHHHHHHHHHhCCCceeecCCC-------------
Confidence 455566777788889999999998887654432 23677888776532 2332221111
Q ss_pred ccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 402 PCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 402 ~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
..+|. ...+.+|....++++|||++..||.-.+. .||+|++|..
T Consensus 182 -------p~~~~-----~~~~~~~~~~~~~~~vGD~~~~Di~~a~~-~G~~~i~v~~ 225 (257)
T TIGR01458 182 -------KTFFL-----EALRATGCEPEEAVMIGDDCRDDVGGAQD-CGMRGIQVRT 225 (257)
T ss_pred -------HHHHH-----HHHHHhCCChhhEEEECCCcHHHHHHHHH-cCCeEEEECC
Confidence 11221 23444577788999999999999998875 6999999953
No 65
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=95.98 E-value=0.018 Score=54.32 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=61.8
Q ss_pred ccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccC----CCCCCCCCCcc
Q 006951 315 ELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSAR----KPEFFQMSHPL 390 (624)
Q Consensus 315 eKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~Ar----KP~FF~e~~pf 390 (624)
.-++..-|.+..+|..|+ .|.++.++||+.-+|+..+++.+ +..| .+||.|+.... ||.
T Consensus 41 ~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l-------~~~~-~~f~~i~~~~d~~~~KP~-------- 103 (148)
T smart00577 41 GVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLL-------DPKK-YFGYRRLFRDECVFVKGK-------- 103 (148)
T ss_pred EEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHh-------CcCC-CEeeeEEECccccccCCe--------
Confidence 344556789999999998 57899999999999999999876 2333 56798877542 332
Q ss_pred EEEeCCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccccccc
Q 006951 391 YEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQS 445 (624)
Q Consensus 391 ~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~s 445 (624)
| ..-.+.+|....+++||||.. .|+...
T Consensus 104 ---------------------~-----~k~l~~l~~~p~~~i~i~Ds~-~~~~aa 131 (148)
T smart00577 104 ---------------------Y-----VKDLSLLGRDLSNVIIIDDSP-DSWPFH 131 (148)
T ss_pred ---------------------E-----eecHHHcCCChhcEEEEECCH-HHhhcC
Confidence 0 011344577788999999997 444433
No 66
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=95.43 E-value=0.14 Score=51.64 Aligned_cols=102 Identities=18% Similarity=0.272 Sum_probs=73.5
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
..-|.+..+|..|++.|.++-+.|||+-.-+..+++-+ .=.+|||.||+.+.=+ .+
T Consensus 86 ~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~---------gl~~~f~~~v~~~dv~---------------~~ 141 (221)
T COG0637 86 KPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARL---------GLLDYFDVIVTADDVA---------------RG 141 (221)
T ss_pred CCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHc---------cChhhcchhccHHHHh---------------cC
Confidence 34578999999999999999999999988888887644 2467999988765321 11
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
+| .+-+|- .-.+.+|....+++.|.|...|=. +-+..|-+++.|..
T Consensus 142 --KP-----~Pd~yL-----~Aa~~Lgv~P~~CvviEDs~~Gi~--Aa~aAGm~vv~v~~ 187 (221)
T COG0637 142 --KP-----APDIYL-----LAAERLGVDPEECVVVEDSPAGIQ--AAKAAGMRVVGVPA 187 (221)
T ss_pred --CC-----CCHHHH-----HHHHHcCCChHHeEEEecchhHHH--HHHHCCCEEEEecC
Confidence 11 123442 224667888999999999998732 33457999998864
No 67
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=95.30 E-value=0.11 Score=49.07 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=43.3
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEc
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVS 377 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ 377 (624)
+...|.+..+|..|++.|-++.++||+.-.++..++..+ +|.++||.|++.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~---------~l~~~f~~i~~~ 121 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI---------GEKDVFIEIYSN 121 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc---------CChhheeEEecc
Confidence 445677889999999999999999999999999988754 388999998853
No 68
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=95.27 E-value=0.086 Score=51.80 Aligned_cols=105 Identities=16% Similarity=0.144 Sum_probs=66.8
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
+...|....+|..++++|.++.++||+.-.++..++..+ + +..+|+..+... ++. +.-.. .
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-~--------i~~~~~~~~~~~-------~~~-~~~~~--~ 144 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL-G--------LDAAFANRLEVE-------DGK-LTGLV--E 144 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-C--------CCceEeeEEEEE-------CCE-EEEEe--c
Confidence 446788999999999999999999999999999888765 1 344665433221 110 00000 0
Q ss_pred CceeccccCCCCccccCCCHHHH---HHHhCCCCCcEEEEcCcccccccccccccCceE
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMI---ENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRT 453 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l---~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT 453 (624)
|.. ++..+....+ ++.+|....+++||||. .+|+...+. .|+..
T Consensus 145 ~~~----------~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs-~~Di~aa~~-ag~~i 191 (219)
T TIGR00338 145 GPI----------VDASYKGKTLLILLRKEGISPENTVAVGDG-ANDLSMIKA-AGLGI 191 (219)
T ss_pred Ccc----------cCCcccHHHHHHHHHHcCCCHHHEEEEECC-HHHHHHHHh-CCCeE
Confidence 100 1111233333 34456666799999999 599977665 48865
No 69
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=95.04 E-value=0.0066 Score=62.85 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=31.5
Q ss_pred HHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 420 IENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 420 l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
..+.+|....++++|||.+..||.-.+. .||+|++|-
T Consensus 211 ~~~~~~~~~~~~lmIGD~~~tDI~~A~~-aGi~si~V~ 247 (279)
T TIGR01452 211 ITENFSIDPARTLMVGDRLETDILFGHR-CGMTTVLVL 247 (279)
T ss_pred HHHHhCCChhhEEEECCChHHHHHHHHH-cCCcEEEEC
Confidence 4455677788999999999999998875 699999993
No 70
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=94.73 E-value=0.12 Score=54.38 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=29.8
Q ss_pred HHHhCCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 421 ENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 421 ~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
.+.+|...+++|-|||.+.+||.-.+. .||.|++|.-
T Consensus 200 l~~~~~~~~~~~mVGD~~~TDI~~a~~-~G~~t~LV~T 236 (269)
T COG0647 200 LEKLGLDRSEVLMVGDRLDTDILGAKA-AGLDTLLVLT 236 (269)
T ss_pred HHHhCCCcccEEEEcCCchhhHHHHHH-cCCCEEEEcc
Confidence 334455557999999999999998875 6999999953
No 71
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=94.66 E-value=0.068 Score=55.08 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=61.8
Q ss_pred ccccccCCCchHHHHHHHHhCCeEEEEeCC----ChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCcc
Q 006951 315 ELFVEPDPELPLALLDQKEAGKKLLLITNS----DYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPL 390 (624)
Q Consensus 315 eKYI~kdp~l~~~L~~lr~~GKKlFLiTNS----~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf 390 (624)
.....+-+....+|..++++|.++|++||. .=.+++.+++++- +.++|++|+..-.-+.
T Consensus 110 ~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lG---------i~~~f~~i~~~d~~~~-------- 172 (237)
T TIGR01672 110 DEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFH---------IPAMNPVIFAGDKPGQ-------- 172 (237)
T ss_pred ccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhC---------CchheeEEECCCCCCC--------
Confidence 333334444888999999999999999998 5457777776552 5579987754321100
Q ss_pred EEEeCCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 391 YEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 391 ~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
. + +.. ....+-.| -++||||++ .||...+ ..|-++++|.
T Consensus 173 ---------~----K--p~~-------~~~l~~~~----i~i~vGDs~-~DI~aAk-~AGi~~I~V~ 211 (237)
T TIGR01672 173 ---------Y----Q--YTK-------TQWIQDKN----IRIHYGDSD-NDITAAK-EAGARGIRIL 211 (237)
T ss_pred ---------C----C--CCH-------HHHHHhCC----CeEEEeCCH-HHHHHHH-HCCCCEEEEE
Confidence 0 0 000 00111111 179999999 8997665 4688888873
No 72
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=94.45 E-value=0.05 Score=52.29 Aligned_cols=82 Identities=24% Similarity=0.411 Sum_probs=61.7
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccC--CCCCCCCCCccEEEeCCCC
Q 006951 321 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSAR--KPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~Ar--KP~FF~e~~pf~~v~~~~g 398 (624)
-|+...+|..|+++|.++.++|+.+...+..+.+.+ | ++|.+|..-. ||
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l-g-----------i~~~~v~a~~~~kP----------------- 179 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL-G-----------IFDSIVFARVIGKP----------------- 179 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT-T-----------SCSEEEEESHETTT-----------------
T ss_pred hhhhhhhhhhhhccCcceeeeecccccccccccccc-c-----------cccccccccccccc-----------------
Confidence 478999999999999999999999999999999965 2 2444333333 33
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccc
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSK 446 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sK 446 (624)
..++| ..+.+.++..+.+|+||||.+ .|+...|
T Consensus 180 ---------~~k~~-----~~~i~~l~~~~~~v~~vGDg~-nD~~al~ 212 (215)
T PF00702_consen 180 ---------EPKIF-----LRIIKELQVKPGEVAMVGDGV-NDAPALK 212 (215)
T ss_dssp ---------HHHHH-----HHHHHHHTCTGGGEEEEESSG-GHHHHHH
T ss_pred ---------cchhH-----HHHHHHHhcCCCEEEEEccCH-HHHHHHH
Confidence 01122 466777898888999999999 9987654
No 73
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=94.37 E-value=0.054 Score=57.45 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=66.2
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcc---cccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 322 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQH---SFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 322 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Y---l~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
|.+..+|.+|++.|.++.++||.+...+..+++. +++ ..++|+.|+.. .||
T Consensus 34 ~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~--------~~~~f~~~~~~-~~p----------------- 87 (320)
T TIGR01686 34 KTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFIL--------QAEDFDARSIN-WGP----------------- 87 (320)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccC--------cHHHeeEEEEe-cCc-----------------
Confidence 5688899999999999999999999999999986 232 56899988665 333
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccc
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVH 448 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~ 448 (624)
..-+...+.+.+|..-.+++||||+.+ |+...+..
T Consensus 88 --------------k~~~i~~~~~~l~i~~~~~vfidD~~~-d~~~~~~~ 122 (320)
T TIGR01686 88 --------------KSESLRKIAKKLNLGTDSFLFIDDNPA-ERANVKIT 122 (320)
T ss_pred --------------hHHHHHHHHHHhCCCcCcEEEECCCHH-HHHHHHHH
Confidence 022344566667888889999999987 77766653
No 74
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=94.28 E-value=0.14 Score=50.31 Aligned_cols=89 Identities=22% Similarity=0.283 Sum_probs=59.0
Q ss_pred CCCchHHHHHHHHhCC--eEEEEeCCC-------hHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccE
Q 006951 321 DPELPLALLDQKEAGK--KLLLITNSD-------YHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLY 391 (624)
Q Consensus 321 dp~l~~~L~~lr~~GK--KlFLiTNS~-------~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~ 391 (624)
.|++..+|.++++.+. ++.+++||- ..-+..+-+-+ | ..++.-.|+||+
T Consensus 61 ~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l-------g------Ipvl~h~~kKP~--------- 118 (168)
T PF09419_consen 61 PPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL-------G------IPVLRHRAKKPG--------- 118 (168)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh-------C------CcEEEeCCCCCc---------
Confidence 4678889999998864 699999993 44444443332 1 455666788871
Q ss_pred EEeCCCCceeccccCCCCccccCCCHHHHHHHhCC-----CCCcEEEEcCcccccccccccccCceEEee
Q 006951 392 EVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNI-----HGDEILYVGDHIYTDVSQSKVHLRWRTALI 456 (624)
Q Consensus 392 ~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~-----~G~~VLYfGDHIy~DIl~sKk~~gWRT~aI 456 (624)
+...+.+.++. +-+++..|||.++.||+-... .|-.|++|
T Consensus 119 ------------------------~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~-~G~~tilv 163 (168)
T PF09419_consen 119 ------------------------CFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNR-MGSYTILV 163 (168)
T ss_pred ------------------------cHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhc-cCceEEEE
Confidence 11122222222 257899999999999998876 57556654
No 75
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=94.24 E-value=0.15 Score=50.76 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=36.0
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccc
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSF 357 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~ 357 (624)
+...|.+..+|..++++|.+++++||+.-.|+..++..++
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 112 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLI 112 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhC
Confidence 4567889999999999999999999999999999998764
No 76
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=94.15 E-value=0.022 Score=53.86 Aligned_cols=84 Identities=19% Similarity=0.334 Sum_probs=57.4
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCc
Q 006951 320 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGL 399 (624)
Q Consensus 320 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~ 399 (624)
.-|....+|. ++.++||++-.+....+..+ ...++||.||+.-.- |.
T Consensus 91 ~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~---------~l~~~fd~v~~~~~~-----------------~~ 137 (175)
T TIGR01493 91 PWPDSAAALA-------RVAILSNASHWAFDQFAQQA---------GLPWYFDRAFSVDTV-----------------RA 137 (175)
T ss_pred CCCchHHHHH-------HHhhhhCCCHHHHHHHHHHC---------CCHHHHhhhccHhhc-----------------CC
Confidence 4567777776 37899999999999988765 278899987643210 11
Q ss_pred eeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccccccccc
Q 006951 400 MRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKV 447 (624)
Q Consensus 400 l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk 447 (624)
.+| ...+| ....+.+|....+++|||||. .||..+++
T Consensus 138 ~KP-----~p~~f-----~~~~~~~~~~p~~~l~vgD~~-~Di~~A~~ 174 (175)
T TIGR01493 138 YKP-----DPVVY-----ELVFDTVGLPPDRVLMVAAHQ-WDLIGARK 174 (175)
T ss_pred CCC-----CHHHH-----HHHHHHHCCCHHHeEeEecCh-hhHHHHhc
Confidence 111 12333 234556688888999999994 79887764
No 77
>PHA02597 30.2 hypothetical protein; Provisional
Probab=93.50 E-value=0.19 Score=48.80 Aligned_cols=101 Identities=11% Similarity=0.098 Sum_probs=64.1
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc-ccccCCCCCCCCCCccEEEEccC-CCCCCCCCCccEEEeC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS-FNRFLPNDMGWRDLFNMVIVSAR-KPEFFQMSHPLYEVVT 395 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl-~~~~l~~g~dWrdyFDvVIv~Ar-KP~FF~e~~pf~~v~~ 395 (624)
+..-|....+|.+|++.++ ++++||..-.........+ +. .-|-++|+.||+... ||
T Consensus 73 ~~~~pG~~e~L~~L~~~~~-~~i~Tn~~~~~~~~~~~~~~l~------~~f~~~f~~i~~~~~~~~-------------- 131 (197)
T PHA02597 73 LSAYDDALDVINKLKEDYD-FVAVTALGDSIDALLNRQFNLN------ALFPGAFSEVLMCGHDES-------------- 131 (197)
T ss_pred ccCCCCHHHHHHHHHhcCC-EEEEeCCccchhHHHHhhCCHH------HhCCCcccEEEEeccCcc--------------
Confidence 3456788999999998875 7888997766555444433 11 224457777765443 22
Q ss_pred CCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccccccccccc-CceEEeehHh
Q 006951 396 GEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHL-RWRTALICRE 459 (624)
Q Consensus 396 ~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~-gWRT~aIVpE 459 (624)
+..+ .....+.+| ..+++||||...+ +..++... |+.|+.+-..
T Consensus 132 ------------kp~~-----~~~a~~~~~--~~~~v~vgDs~~d-i~aA~~a~~Gi~~i~~~~~ 176 (197)
T PHA02597 132 ------------KEKL-----FIKAKEKYG--DRVVCFVDDLAHN-LDAAHEALSQLPVIHMLRG 176 (197)
T ss_pred ------------cHHH-----HHHHHHHhC--CCcEEEeCCCHHH-HHHHHHHHcCCcEEEecch
Confidence 0011 123344455 3569999999988 77666533 9999999555
No 78
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=93.33 E-value=0.11 Score=53.20 Aligned_cols=111 Identities=22% Similarity=0.254 Sum_probs=75.7
Q ss_pred cccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEE
Q 006951 314 PELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEV 393 (624)
Q Consensus 314 peKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v 393 (624)
|=.+|.+|+.|+.+|+.|+..+| .+-||++=.-+.++.+++ | =.|.||.||+- ...+|.
T Consensus 95 Plq~LkPD~~LRnlLL~l~~r~k--~~FTNa~k~HA~r~Lk~L-------G--ieDcFegii~~-------e~~np~--- 153 (244)
T KOG3109|consen 95 PLQDLKPDPVLRNLLLSLKKRRK--WIFTNAYKVHAIRILKKL-------G--IEDCFEGIICF-------ETLNPI--- 153 (244)
T ss_pred cHhhcCCCHHHHHHHHhCccccE--EEecCCcHHHHHHHHHHh-------C--hHHhccceeEe-------eccCCC---
Confidence 44568999999999999998874 667999999999999988 2 67899999973 222221
Q ss_pred eCCCCceeccccCCCCccccCCCHHH---HHHHhCCCCCcEEEEcCcccccccccccccCceEEeehHhh
Q 006951 394 VTGEGLMRPCFKARTGGLYSGGSAQM---IENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 460 (624)
Q Consensus 394 ~~~~g~l~~~~~l~~G~VYsgGn~~~---l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVpEL 460 (624)
++ .+=+-=+... ..+..|...++=.||=|.-..-|...|. .||+|++|-.|=
T Consensus 154 --~~------------~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~-vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 154 --EK------------TVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKE-VGLKTVLVGREH 208 (244)
T ss_pred --CC------------ceeecCCHHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHh-ccceeEEEEeee
Confidence 11 0111122333 4455677755444444555677887765 699999997653
No 79
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=93.15 E-value=0.063 Score=51.03 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=58.8
Q ss_pred HHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCceeccccC
Q 006951 327 ALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKA 406 (624)
Q Consensus 327 ~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~l~~~~~l 406 (624)
.+.+|+++|.+++++||.+...+..++..+- +.++|+- .||
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~g---------i~~~~~~-----~~~------------------------- 76 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLG---------ITHLYQG-----QSN------------------------- 76 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcC---------CCEEEec-----ccc-------------------------
Confidence 6899999999999999999999988877652 4555541 111
Q ss_pred CCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 407 RTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 407 ~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
+.. -...+++.+|....+++||||.. .|+.-.+.. |- +++|-
T Consensus 77 -k~~-----~~~~~~~~~~~~~~~~~~vGDs~-~D~~~~~~a-g~-~~~v~ 118 (154)
T TIGR01670 77 -KLI-----AFSDILEKLALAPENVAYIGDDL-IDWPVMEKV-GL-SVAVA 118 (154)
T ss_pred -hHH-----HHHHHHHHcCCCHHHEEEECCCH-HHHHHHHHC-CC-eEecC
Confidence 111 12455666788888999999997 898876643 44 36654
No 80
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=92.99 E-value=0.1 Score=50.98 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=74.4
Q ss_pred HHHhccchhhhHHHHH-cCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEE
Q 006951 296 ALFRAHVEGQLKSEIM-SKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMV 374 (624)
Q Consensus 296 Av~~vH~~G~lk~~v~-~npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvV 374 (624)
.+|-|+.+|+++=.-. +.+.+|=.+|. .-+.+|++.|.++.++||.+..+++..++.+- +.++|+.+
T Consensus 13 d~dGv~tdg~~~~~~~g~~~~~~~~~D~---~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lg---------i~~~f~~~ 80 (169)
T TIGR02726 13 DVDGVMTDGRIVINDEGIESRNFDIKDG---MGVIVLQLCGIDVAIITSKKSGAVRHRAEELK---------IKRFHEGI 80 (169)
T ss_pred eCceeeECCeEEEcCCCcEEEEEecchH---HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCC---------CcEEEecC
Confidence 3567778886531111 11344444443 35677889999999999999999999999882 66777632
Q ss_pred EEccCCCCCCCCCCccEEEeCCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceEE
Q 006951 375 IVSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTA 454 (624)
Q Consensus 375 Iv~ArKP~FF~e~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~ 454 (624)
|| +.. ....+.+.+|....+++||||.. .|+.-.+. .|+.-+
T Consensus 81 -----kp--------------------------kp~-----~~~~~~~~l~~~~~ev~~iGD~~-nDi~~~~~-ag~~~a 122 (169)
T TIGR02726 81 -----KK--------------------------KTE-----PYAQMLEEMNISDAEVCYVGDDL-VDLSMMKR-VGLAVA 122 (169)
T ss_pred -----CC--------------------------CHH-----HHHHHHHHcCcCHHHEEEECCCH-HHHHHHHH-CCCeEE
Confidence 11 011 23456666788888999999997 79987765 576654
Q ss_pred e
Q 006951 455 L 455 (624)
Q Consensus 455 a 455 (624)
.
T Consensus 123 m 123 (169)
T TIGR02726 123 V 123 (169)
T ss_pred C
Confidence 3
No 81
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=92.97 E-value=0.039 Score=55.88 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=61.4
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCcee
Q 006951 322 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMR 401 (624)
Q Consensus 322 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~l~ 401 (624)
|.+..+|..+++.|.++ ++||.+..|....+... +.-.+|+.|..-+.+|.+. |+..
T Consensus 141 ~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~---------~~g~~~~~i~~~g~~~~~~-------------gKP~ 197 (242)
T TIGR01459 141 DEFDELFAPIVARKIPN-ICANPDRGINQHGIYRY---------GAGYYAELIKQLGGKVIYS-------------GKPY 197 (242)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEe---------cccHHHHHHHHhCCcEecC-------------CCCC
Confidence 34556677777788874 89999999987665432 1334566542222233111 1100
Q ss_pred ccccCCCCccccCCCHHHHHHHhCCC-CCcEEEEcCcccccccccccccCceEEeeh
Q 006951 402 PCFKARTGGLYSGGSAQMIENSLNIH-GDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 402 ~~~~l~~G~VYsgGn~~~l~~llg~~-G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
..+| ....+.+|.. ..+++||||.+..||.-.+. .||+|++|.
T Consensus 198 -------~~~~-----~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~-~G~~~i~v~ 241 (242)
T TIGR01459 198 -------PAIF-----HKALKECSNIPKNRMLMVGDSFYTDILGANR-LGIDTALVL 241 (242)
T ss_pred -------HHHH-----HHHHHHcCCCCcccEEEECCCcHHHHHHHHH-CCCeEEEEe
Confidence 0111 2334445544 35899999999999998875 699999873
No 82
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=92.88 E-value=0.21 Score=48.34 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=63.6
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCce
Q 006951 321 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLM 400 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~l 400 (624)
.|....+|.+++++|.++.++|||+-.++..+++++ | +..+|...+.. .++|..
T Consensus 89 ~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l-g--------~~~~~~~~l~~-----------------~~~g~~ 142 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL-G--------IDNAIGTRLEE-----------------SEDGIY 142 (202)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc-C--------CcceEecceEE-----------------cCCCEE
Confidence 456778889999999999999999999999999865 1 44555441111 011111
Q ss_pred eccccCCCCccccCCCHHHHHHHh---CCCCCcEEEEcCcccccccccccccCceEEeehH
Q 006951 401 RPCFKARTGGLYSGGSAQMIENSL---NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICR 458 (624)
Q Consensus 401 ~~~~~l~~G~VYsgGn~~~l~~ll---g~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVp 458 (624)
.. +......+..+-...+.+++ +...++++|+||+. +|+--.+. .| ..++|.|
T Consensus 143 ~g--~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~~~~gDs~-~D~~~~~~-a~-~~~~v~~ 198 (202)
T TIGR01490 143 TG--NIDGNNCKGEGKVHALAELLAEEQIDLKDSYAYGDSI-SDLPLLSL-VG-HPYVVNP 198 (202)
T ss_pred eC--CccCCCCCChHHHHHHHHHHHHcCCCHHHcEeeeCCc-ccHHHHHh-CC-CcEEeCC
Confidence 10 00001122233333455554 44456899999999 79865543 33 4445544
No 83
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=92.31 E-value=0.0021 Score=70.28 Aligned_cols=199 Identities=7% Similarity=-0.169 Sum_probs=127.8
Q ss_pred CCCCCeeEecCccccCCCcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCCCCCC--CCCccccccceEeecCCCc
Q 006951 131 RNSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPVEGL--AFDPDLVIRGLVIDKEKGN 208 (624)
Q Consensus 131 ~~~~~~IF~Nr~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~~~L--~yDp~F~iRGLv~D~~~Gn 208 (624)
...+-.++++++|... +.+.+++++|++. |..+..+.+.|..--..|...++|...+ .+++-++++|+.++...++
T Consensus 37 TL~~Y~~~~~esLay~-~~~~~l~~~Gyp~-~ll~~~~d~~f~~rGL~ld~~~GN~lKld~~~~vl~a~hg~rfls~~~~ 114 (424)
T KOG2469|consen 37 TLARYNLPEMESLAYD-LAQFLLKDKGYPN-ELLSTSFDWNFPCRGLVLDKERGNLLKLDRFGYVLRAAHGTRFLSNEEI 114 (424)
T ss_pred chhhhcccchHHHHHH-HHHHHHHhcCChh-hhhccccCccceeeeeEEeccCCceeeeeccCceeeeccccccccccch
Confidence 3566779999999999 9999999999998 7766656566654333455678886655 4799999999999999999
Q ss_pred EEeecCCCcEEEEeeccccCcHhHHHHHhcCeecccccccchhhhhhhhchhHHHHHHHHHHHhhhCCCCCCCCCCChHH
Q 006951 209 LVKADRFGYVKRAMHGTTMLSNRAVSEMYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVNRLDEGAIGPELGPLDYKG 288 (624)
Q Consensus 209 LLKvD~~G~I~~a~HG~~~Ls~eEi~e~Yg~~~i~~~~~~r~~~l~tlFslpEa~L~a~lVd~~d~~~~~~~l~~~~y~~ 288 (624)
..+.++.+ |. -+. |.-.+. ++..+....--|.++.++|+ .+++..+ +.....+.. ...++.
T Consensus 115 ~eiyg~~~-~~---~~~---~~~~~l----~t~F~~~ea~~~aq~vd~~d-----~~~~~~~--~~~dyk~~~-~~v~~~ 175 (424)
T KOG2469|consen 115 SEIYGRKL-VR---LSD---SRYYLL----NTLFSMPEADLFAQAVDFLD-----NGPEYGP--VDMDYKPGW-KDVRAA 175 (424)
T ss_pred hhhccccc-cc---ccC---chhhhh----hhhhhchhHHHHHhhcchhh-----cCCccCc--cchhhcchH-HHHHHH
Confidence 99998887 11 111 111111 12121111112333434443 3332211 111111111 123668
Q ss_pred HHHHHHHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhh
Q 006951 289 LYKAVGKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMM 353 (624)
Q Consensus 289 l~~DV~~Av~~vH~~G~lk~~v~~npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM 353 (624)
++.+..++.-+.|+.|...+.|..+ ++++. .+..+.-.-|..--+ +.++.||++.-+++..|
T Consensus 176 ~~~~h~~~~lk~~~~~~pek~V~~d-~~~v~-~l~~~r~sGKk~fl~-Tns~~~ytd~~mt~~~~ 237 (424)
T KOG2469|consen 176 GNAVHLYGLLKKKMMGKPERYVVYD-GTIVP-LLSMLRDSGKKTFLH-TNSDWDYTDIFMAFHYG 237 (424)
T ss_pred HhHHHHHHHHHHHHhcCCCceeeec-Ccccc-chHHHHhhccceEEe-eccccchhhHHHHHHhC
Confidence 8888889998999999997766555 45554 444444444444445 47999999999999999
No 84
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=91.20 E-value=0.34 Score=51.83 Aligned_cols=69 Identities=23% Similarity=0.299 Sum_probs=55.9
Q ss_pred chhhhHHHHHcCccccc-ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCC
Q 006951 302 VEGQLKSEIMSKPELFV-EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARK 380 (624)
Q Consensus 302 ~~G~lk~~v~~npeKYI-~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArK 380 (624)
.+|+|-. + ++=| .+||.+..+|.+|+++|.++.|+||+.-+++...|+.+ ....|||+||+....
T Consensus 133 LDgTLi~----~-~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~l---------GLd~YFdvIIs~Gdv 198 (301)
T TIGR01684 133 LDSTLIT----D-EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKV---------KLDRYFDIIISGGHK 198 (301)
T ss_pred cCCCCcC----C-CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc---------CCCcccCEEEECCcc
Confidence 5777632 2 4434 56899999999999999999999999999999888865 377899999999887
Q ss_pred CCCC
Q 006951 381 PEFF 384 (624)
Q Consensus 381 P~FF 384 (624)
..--
T Consensus 199 ~~~k 202 (301)
T TIGR01684 199 AEEY 202 (301)
T ss_pred ccCC
Confidence 5544
No 85
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=91.07 E-value=0.17 Score=42.18 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=34.1
Q ss_pred HHHHHHhCCCCCcEEEEcCcccccccccccccCceEEeehHh
Q 006951 418 QMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRE 459 (624)
Q Consensus 418 ~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVpE 459 (624)
....+.++....++++|||.+..||.-.+. .||+|++|.--
T Consensus 11 ~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~-~G~~~ilV~tG 51 (75)
T PF13242_consen 11 EQALKRLGVDPSRCVMVGDSLETDIEAAKA-AGIDTILVLTG 51 (75)
T ss_dssp HHHHHHHTSGGGGEEEEESSTTTHHHHHHH-TTSEEEEESSS
T ss_pred HHHHHHcCCCHHHEEEEcCCcHhHHHHHHH-cCCcEEEECCC
Confidence 345666788888999999999999998875 69999999643
No 86
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=90.69 E-value=1.8 Score=42.99 Aligned_cols=68 Identities=13% Similarity=-0.043 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHHHhccchhhhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006951 284 LDYKGLYKAVGKALFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 284 ~~y~~l~~DV~~Av~~vH~~G~lk~~v~~npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 356 (624)
+++...++. -+...+... ++++.+-..+.+.-.|.+..+|..+++.|.++.++|||.-.|+..++..+
T Consensus 40 ~~~~e~~~~---~~~~~~~~~--~~~~~~~~~~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 107 (214)
T TIGR03333 40 LSIQEGVGR---MFGLLPSSL--KEEITSFVLETAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI 107 (214)
T ss_pred ccHHHHHHH---HHhhCCCch--HHHHHHHHHhcCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh
Confidence 444444433 234444333 23443333334667889999999999999999999999999999998876
No 87
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=90.59 E-value=0.26 Score=51.04 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=66.5
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCC-CccEEEEccCCCCCCCCCCccEEEeCCCCc
Q 006951 321 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRD-LFNMVIVSARKPEFFQMSHPLYEVVTGEGL 399 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrd-yFDvVIv~ArKP~FF~e~~pf~~v~~~~g~ 399 (624)
.|....+|.+|++.|.+++++||.+..++..++.++- +.. +||.|+....-+.|..+.. .++
T Consensus 189 ~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~---------~~~~~f~~i~~~~~~~~~~~~~~--------~~k 251 (300)
T PHA02530 189 NPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLR---------QTDIWFDDLIGRPPDMHFQREQG--------DKR 251 (300)
T ss_pred ChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHH---------HcCCchhhhhCCcchhhhcccCC--------CCC
Confidence 4678889999999999999999999999999999883 343 7998876653222222111 011
Q ss_pred eeccccCCCCccccCCCHHHHHHHhCC-CCCcEEEEcCcccccccccccccCceEEee
Q 006951 400 MRPCFKARTGGLYSGGSAQMIENSLNI-HGDEILYVGDHIYTDVSQSKVHLRWRTALI 456 (624)
Q Consensus 400 l~~~~~l~~G~VYsgGn~~~l~~llg~-~G~~VLYfGDHIy~DIl~sKk~~gWRT~aI 456 (624)
-.+ .++. ..+.+ ++. .-.+++||||..+ ||...+ ..|-.+++|
T Consensus 252 p~p-------~~~~----~~l~~-~~~~~~~~~~~vgD~~~-d~~~a~-~~Gi~~i~v 295 (300)
T PHA02530 252 PDD-------VVKE----EIFWE-KIAPKYDVLLAVDDRDQ-VVDMWR-RIGLECWQV 295 (300)
T ss_pred CcH-------HHHH----HHHHH-HhccCceEEEEEcCcHH-HHHHHH-HhCCeEEEe
Confidence 001 1110 12233 344 3478999999964 444333 457776665
No 88
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=90.48 E-value=0.75 Score=43.25 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=34.0
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006951 320 PDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 320 kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 356 (624)
..|....+|..++++|.++.++|+|.-.|+..++..+
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~ 110 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL 110 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 4688999999999999999999999999999998876
No 89
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=89.60 E-value=1.3 Score=42.99 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=32.5
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 356 (624)
..-|....+|..++++ .++.++||+.-.+++.++..+
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~ 104 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL 104 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc
Confidence 3458889999999988 789999999999999988865
No 90
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=89.60 E-value=0.54 Score=50.31 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=54.4
Q ss_pred chhhhHHHHHcCccccc-ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCC
Q 006951 302 VEGQLKSEIMSKPELFV-EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARK 380 (624)
Q Consensus 302 ~~G~lk~~v~~npeKYI-~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArK 380 (624)
.+|+|-.. ++=| .++|.+..+|.+|++.|.++.++||.+-+++...+..+ ....+||+||+....
T Consensus 135 ~D~TL~~~-----~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~l---------gL~~yFDvII~~g~i 200 (303)
T PHA03398 135 LDSTLITD-----EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKET---------KLEGYFDIIICGGRK 200 (303)
T ss_pred cCCCccCC-----CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHc---------CCCccccEEEECCCc
Confidence 56776321 3333 56899999999999999999999999999998888865 267999999998775
Q ss_pred CCCC
Q 006951 381 PEFF 384 (624)
Q Consensus 381 P~FF 384 (624)
.+--
T Consensus 201 ~~k~ 204 (303)
T PHA03398 201 AGEY 204 (303)
T ss_pred cccc
Confidence 4443
No 91
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=89.35 E-value=0.66 Score=53.18 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=30.4
Q ss_pred cCcccccccCCCchHHHHHHHHhCCeEEEEeCCCh
Q 006951 312 SKPELFVEPDPELPLALLDQKEAGKKLLLITNSDY 346 (624)
Q Consensus 312 ~npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~ 346 (624)
.||+.+...-|.++..|.+|+++|.+++++||..-
T Consensus 190 ~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 190 KGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred CCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 46777766678999999999999999999999766
No 92
>PRK08238 hypothetical protein; Validated
Probab=88.00 E-value=1.4 Score=49.94 Aligned_cols=46 Identities=30% Similarity=0.382 Sum_probs=40.0
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEcc
Q 006951 321 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA 378 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A 378 (624)
.|+...+++++++.|.++.|+|||+-.+++.+++++ | + ||.||..-
T Consensus 74 ~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l-------G--l---Fd~Vigsd 119 (479)
T PRK08238 74 NEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL-------G--L---FDGVFASD 119 (479)
T ss_pred ChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc-------C--C---CCEEEeCC
Confidence 467889999999999999999999999999999987 2 2 89888763
No 93
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=87.66 E-value=0.59 Score=45.68 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=58.6
Q ss_pred HHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCceecccc
Q 006951 326 LALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFK 405 (624)
Q Consensus 326 ~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~l~~~~~ 405 (624)
..+.+|++.|.++.++||.+...+..++..+ | +..+|+ +.+|
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l-------g--l~~~f~-----g~~~------------------------ 96 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL-------G--ITHLYQ-----GQSN------------------------ 96 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc-------C--Cceeec-----CCCc------------------------
Confidence 3677888999999999999999999998876 1 333442 1110
Q ss_pred CCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceE
Q 006951 406 ARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRT 453 (624)
Q Consensus 406 l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT 453 (624)
+ ..-+..+++.+|....+|+||||.+ .|+.-.+. .|...
T Consensus 97 --k-----~~~l~~~~~~~gl~~~ev~~VGDs~-~D~~~a~~-aG~~~ 135 (183)
T PRK09484 97 --K-----LIAFSDLLEKLAIAPEQVAYIGDDL-IDWPVMEK-VGLSV 135 (183)
T ss_pred --H-----HHHHHHHHHHhCCCHHHEEEECCCH-HHHHHHHH-CCCeE
Confidence 0 1224456677788888999999997 89987765 58773
No 94
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=86.86 E-value=0.92 Score=43.71 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=47.3
Q ss_pred CcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEE
Q 006951 313 KPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIV 376 (624)
Q Consensus 313 npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv 376 (624)
+..-|+.+-|.+..+|..|.+. -.+.+.|++.-.|++.+++.+- .++.+|+.++.
T Consensus 36 ~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ld--------p~~~~f~~~l~ 90 (162)
T TIGR02251 36 IIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILD--------RGGKVISRRLY 90 (162)
T ss_pred EEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHC--------cCCCEEeEEEE
Confidence 4567889999999999999887 7899999999999999999882 35668887775
No 95
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=86.33 E-value=0.56 Score=48.04 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=31.4
Q ss_pred HHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 420 IENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 420 l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
+.+.+|....+++||||++..||.-.+. .||+|++|-
T Consensus 187 ~~~~~~~~~~~~~~VGD~~~~Di~~a~~-~G~~~v~v~ 223 (249)
T TIGR01457 187 AVEHLGTEREETLMVGDNYLTDIRAGID-AGIDTLLVH 223 (249)
T ss_pred HHHHcCCCcccEEEECCCchhhHHHHHH-cCCcEEEEc
Confidence 4455677788999999999999998876 599999994
No 96
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=85.28 E-value=2 Score=44.36 Aligned_cols=66 Identities=9% Similarity=0.148 Sum_probs=45.9
Q ss_pred hhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCC----hHHHHHhhcccccccCCCCCCC-CCCccEEEEcc
Q 006951 305 QLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSD----YHYTDKMMQHSFNRFLPNDMGW-RDLFNMVIVSA 378 (624)
Q Consensus 305 ~lk~~v~~npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~----~~Ytn~vM~Yl~~~~l~~g~dW-rdyFDvVIv~A 378 (624)
.+.+...++...+..+-|....+|..+++.|.++|+|||.. -..++.+++. +| - | .++|++++...
T Consensus 100 ~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~-~g------i-p~~~~f~vil~gd 170 (237)
T PRK11009 100 KFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADD-FH------I-PADNMNPVIFAGD 170 (237)
T ss_pred HHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHH-cC------C-CcccceeEEEcCC
Confidence 34455555556666667778999999999999999999953 4466666652 22 1 2 56888876543
No 97
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=85.20 E-value=1.1 Score=45.46 Aligned_cols=49 Identities=24% Similarity=0.273 Sum_probs=37.8
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHH--HhhcccccccCCCCCCCCC-CccEEEEcc
Q 006951 321 DPELPLALLDQKEAGKKLLLITNSDYHYTD--KMMQHSFNRFLPNDMGWRD-LFNMVIVSA 378 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn--~vM~Yl~~~~l~~g~dWrd-yFDvVIv~A 378 (624)
-|....+|.+|+++|+++.++||+.-.... ..+..+ .+.. +||.||+.+
T Consensus 26 ~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~---------gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 26 YPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL---------GINADLPEMIISSG 77 (242)
T ss_pred CccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC---------CCCccccceEEccH
Confidence 478899999999999999999999876654 333333 2455 899988865
No 98
>PTZ00445 p36-lilke protein; Provisional
Probab=84.41 E-value=1.3 Score=45.57 Aligned_cols=146 Identities=16% Similarity=0.209 Sum_probs=93.7
Q ss_pred hccchhhhHHHHHcCcccccccC-CCchHHHHHHHHhCCeEEEEeCCChHH--HHHhhcccccccCCCC--CCCCCCccE
Q 006951 299 RAHVEGQLKSEIMSKPELFVEPD-PELPLALLDQKEAGKKLLLITNSDYHY--TDKMMQHSFNRFLPND--MGWRDLFNM 373 (624)
Q Consensus 299 ~vH~~G~lk~~v~~npeKYI~kd-p~l~~~L~~lr~~GKKlFLiTNS~~~Y--tn~vM~Yl~~~~l~~g--~dWrdyFDv 373 (624)
.+|..|...+. +++..++..- |++..|+.+|+++|-+|.++|=|+=.- .+.=-+|+-|..+-+. +.=.--|++
T Consensus 56 ~~HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i 133 (219)
T PTZ00445 56 TKHSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKI 133 (219)
T ss_pred hhhcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCcccee
Confidence 57888876554 6778888764 789999999999999999999887533 1111122222111000 111455899
Q ss_pred EEEccCCCCCCCCCCccEEEeCCCCceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCcccccccccccccCceE
Q 006951 374 VIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRT 453 (624)
Q Consensus 374 VIv~ArKP~FF~e~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT 453 (624)
..|-|-=|.|+.+..-+.++ |..+|-. ..+.|. .+.+++-.|....++|+|=|. --.|..+++ .||.|
T Consensus 134 ~~~~~yyp~~w~~p~~y~~~----gl~KPdp---~iK~yH---le~ll~~~gl~peE~LFIDD~-~~NVeaA~~-lGi~a 201 (219)
T PTZ00445 134 KKVYAYYPKFWQEPSDYRPL----GLDAPMP---LDKSYH---LKQVCSDFNVNPDEILFIDDD-MNNCKNALK-EGYIA 201 (219)
T ss_pred eeeeeeCCcccCChhhhhhh----cccCCCc---cchHHH---HHHHHHHcCCCHHHeEeecCC-HHHHHHHHH-CCCEE
Confidence 99999999999987655443 3333311 112241 134555567788899999777 344555544 79999
Q ss_pred EeehH
Q 006951 454 ALICR 458 (624)
Q Consensus 454 ~aIVp 458 (624)
+.+-+
T Consensus 202 i~f~~ 206 (219)
T PTZ00445 202 LHVTG 206 (219)
T ss_pred EEcCC
Confidence 98753
No 99
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=84.33 E-value=2.4 Score=42.92 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCCCcEEEEcCcccccccccccccCc
Q 006951 417 AQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRW 451 (624)
Q Consensus 417 ~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gW 451 (624)
+..+++.+|+..++|++|||.. .|+--.+. .|+
T Consensus 204 l~~l~~~~gi~~~e~i~~GD~~-NDi~m~~~-ag~ 236 (272)
T PRK10530 204 LTQWVEAQGWSMKNVVAFGDNF-NDISMLEA-AGL 236 (272)
T ss_pred HHHHHHHcCCCHHHeEEeCCCh-hhHHHHHh-cCc
Confidence 4567788899889999999995 78776554 354
No 100
>PLN02645 phosphoglycolate phosphatase
Probab=81.60 E-value=1.1 Score=47.57 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=31.4
Q ss_pred HHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 420 IENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 420 l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
..+.+|.+..+++||||.+..||.-.+. .||+|++|.
T Consensus 239 a~~~~~~~~~~~~~VGD~~~~Di~~A~~-aG~~~ilV~ 275 (311)
T PLN02645 239 LANKFGIEKSQICMVGDRLDTDILFGQN-GGCKTLLVL 275 (311)
T ss_pred HHHHcCCCcccEEEEcCCcHHHHHHHHH-cCCCEEEEc
Confidence 3455677888999999999999998876 599999994
No 101
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=81.38 E-value=1.2 Score=50.86 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=33.1
Q ss_pred CCCchHHHHHHHHhC-CeEEEEeCCChHHHHHhhccc
Q 006951 321 DPELPLALLDQKEAG-KKLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 321 dp~l~~~L~~lr~~G-KKlFLiTNS~~~Ytn~vM~Yl 356 (624)
-|+...+|.+|++.| .++.++||.+-..+..+++.+
T Consensus 386 ~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l 422 (556)
T TIGR01525 386 RPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL 422 (556)
T ss_pred hHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh
Confidence 367888999999999 999999999999999999987
No 102
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=80.42 E-value=1.6 Score=44.82 Aligned_cols=42 Identities=29% Similarity=0.206 Sum_probs=29.4
Q ss_pred cccCCCcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCCC
Q 006951 143 LNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 186 (624)
Q Consensus 143 L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 186 (624)
|+|++++.|-+|||+||..=+.. .-.... .++++|.+.|.+.
T Consensus 2 ~~~~~~~lI~~DlDGTLL~~~~~-i~~~~~-~ai~~l~~~Gi~~ 43 (271)
T PRK03669 2 LSLQDPLLIFTDLDGTLLDSHTY-DWQPAA-PWLTRLREAQVPV 43 (271)
T ss_pred CCcCCCeEEEEeCccCCcCCCCc-CcHHHH-HHHHHHHHcCCeE
Confidence 78999999999999999964321 212233 3356677888883
No 103
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=80.09 E-value=3.8 Score=41.02 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=33.0
Q ss_pred ccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006951 319 EPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 319 ~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 356 (624)
...|....++..+++.| ++.++||+.-.++..++..+
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l 104 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL 104 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc
Confidence 34788999999999887 89999999999999999876
No 104
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=79.75 E-value=7.1 Score=40.46 Aligned_cols=114 Identities=19% Similarity=0.356 Sum_probs=71.6
Q ss_pred ccCCCchHHHHHH--HHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCC
Q 006951 319 EPDPELPLALLDQ--KEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTG 396 (624)
Q Consensus 319 ~kdp~l~~~L~~l--r~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~ 396 (624)
.-+|.++.++..+ ...|-.+.+|++|.--|.+.+++.- .=+++|+=|+++ |..|.++--+ .|.+.
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~---------gl~~~f~~I~TN---pa~~~~~G~l-~v~py 137 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHH---------GLRDCFSEIFTN---PACFDADGRL-RVRPY 137 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhC---------CCccccceEEeC---CceecCCceE-EEeCc
Confidence 3467788888888 3568899999999999999999843 367899998886 4556542211 22221
Q ss_pred CCceeccccCCCCccccCCC-H--HHHHHHhC------CCCCcEEEEcCcccccccccccccCceEEe
Q 006951 397 EGLMRPCFKARTGGLYSGGS-A--QMIENSLN------IHGDEILYVGDHIYTDVSQSKVHLRWRTAL 455 (624)
Q Consensus 397 ~g~l~~~~~l~~G~VYsgGn-~--~~l~~llg------~~G~~VLYfGDHIy~DIl~sKk~~gWRT~a 455 (624)
.. +.+. -++-| + ..+.+++. ..-++|+||||- .+|+-.+++...-+.++
T Consensus 138 h~--------h~C~-~C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG-~nD~Cp~~~L~~~D~v~ 195 (234)
T PF06888_consen 138 HS--------HGCS-LCPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDG-RNDFCPALRLRPRDVVF 195 (234)
T ss_pred cC--------CCCC-cCCCccchHHHHHHHHHHHhhcCCCcceEEEECCC-CCCcCcccccCCCCEEe
Confidence 11 1111 11111 1 23444443 334899999998 57888777644444444
No 105
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=79.06 E-value=2.2 Score=48.71 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=32.8
Q ss_pred CCchHHHHHHHHhCC-eEEEEeCCChHHHHHhhccc
Q 006951 322 PELPLALLDQKEAGK-KLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 322 p~l~~~L~~lr~~GK-KlFLiTNS~~~Ytn~vM~Yl 356 (624)
|+....+++|++.|. ++.++||.+...+..+++.+
T Consensus 365 ~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l 400 (536)
T TIGR01512 365 PDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL 400 (536)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc
Confidence 678889999999999 99999999999999999977
No 106
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=78.67 E-value=1.2 Score=47.49 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=25.3
Q ss_pred CcEEEEcCcccccccccccccCceEEeeh
Q 006951 429 DEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 429 ~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
.++++|||.+.+||.-.+. .||.|++|-
T Consensus 264 ~~~~mIGD~~~tDI~ga~~-~G~~silV~ 291 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQN-YGWFSCLVK 291 (321)
T ss_pred heEEEEcCChhhhhhhHHh-CCceEEEec
Confidence 5899999999999998875 699999995
No 107
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=78.48 E-value=7.8 Score=38.92 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=59.3
Q ss_pred cCCCchHHHH-HHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCC
Q 006951 320 PDPELPLALL-DQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEG 398 (624)
Q Consensus 320 kdp~l~~~L~-~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g 398 (624)
.-|.....|. .+++.|.++.++|||+-.|+..++.+. .|..-.++|=+ +. ++. ++|
T Consensus 95 l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~---------~~~~~~~~i~t---~l----------e~~-~gg 151 (210)
T TIGR01545 95 AFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS---------NFIHRLNLIAS---QI----------ERG-NGG 151 (210)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc---------cccccCcEEEE---Ee----------EEe-CCc
Confidence 3678888885 678889999999999999999999764 24333444422 22 221 113
Q ss_pred ceeccccCCCCccccCCCHHHHHHHhCCCCCcEEEEcCccccccc
Q 006951 399 LMRPCFKARTGGLYSGGSAQMIENSLNIHGDEILYVGDHIYTDVS 443 (624)
Q Consensus 399 ~l~~~~~l~~G~VYsgGn~~~l~~llg~~G~~VLYfGDHIy~DIl 443 (624)
.. .....|..|=+..+.+.+|......-..|||+ +|+-
T Consensus 152 ~~------~g~~c~g~~Kv~rl~~~~~~~~~~~~aYsDS~-~D~p 189 (210)
T TIGR01545 152 WV------LPLRCLGHEKVAQLEQKIGSPLKLYSGYSDSK-QDNP 189 (210)
T ss_pred eE------cCccCCChHHHHHHHHHhCCChhheEEecCCc-ccHH
Confidence 21 11234555555667777764334445679998 8864
No 108
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=78.22 E-value=1.6 Score=44.28 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=30.1
Q ss_pred HHHHHhCCCCCcE-EEEcCcccccccccccccCceEEeeh
Q 006951 419 MIENSLNIHGDEI-LYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 419 ~l~~llg~~G~~V-LYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
...+.++...+++ +||||.+..||.-++. .||+|++|.
T Consensus 196 ~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~-~G~~~i~v~ 234 (236)
T TIGR01460 196 AALNLLQARPERRDVMVGDNLRTDILGAKN-AGFDTLLVL 234 (236)
T ss_pred HHHHHhCCCCccceEEECCCcHHHHHHHHH-CCCcEEEEe
Confidence 3455566666665 9999999999998875 699999983
No 109
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=77.62 E-value=3.9 Score=39.44 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=39.1
Q ss_pred CcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006951 313 KPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 313 npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 356 (624)
+...|+.+-|.+..+|.++.+. .++.+.||+.-.|++.+++++
T Consensus 52 ~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~l 94 (156)
T TIGR02250 52 TMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLI 94 (156)
T ss_pred CeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHh
Confidence 5677888999999999999855 899999999999999999988
No 110
>PRK10444 UMP phosphatase; Provisional
Probab=76.34 E-value=2.1 Score=44.15 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=31.1
Q ss_pred HHHHhCCCCCcEEEEcCcccccccccccccCceEEeeh
Q 006951 420 IENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALIC 457 (624)
Q Consensus 420 l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIV 457 (624)
..+.++....+++||||.+..||.-.+. .|++|++|-
T Consensus 183 ~~~~~~~~~~~~v~IGD~~~tDi~~A~~-~G~~~vlV~ 219 (248)
T PRK10444 183 ALNKMQAHSEETVIVGDNLRTDILAGFQ-AGLETILVL 219 (248)
T ss_pred HHHHcCCCcccEEEECCCcHHHHHHHHH-cCCCEEEEC
Confidence 3455677788999999999999998875 699999984
No 111
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=75.45 E-value=3 Score=37.27 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=25.1
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCCh----HHHHHh
Q 006951 321 DPELPLALLDQKEAGKKLLLITNSDY----HYTDKM 352 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTNS~~----~Ytn~v 352 (624)
-|.-..++.+|+++||+++++||+.- .|.++.
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 46788999999999999999999984 455444
No 112
>PHA02597 30.2 hypothetical protein; Provisional
Probab=73.16 E-value=2.6 Score=40.81 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=13.1
Q ss_pred CcEEEEecccceee
Q 006951 148 ISAIGYDMDYTLMH 161 (624)
Q Consensus 148 I~~iGFDmDYTLa~ 161 (624)
++++-||||+||+-
T Consensus 2 ~k~viFDlDGTLiD 15 (197)
T PHA02597 2 KPTILTDVDGVLLS 15 (197)
T ss_pred CcEEEEecCCceEc
Confidence 68999999999998
No 113
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=73.09 E-value=29 Score=36.93 Aligned_cols=105 Identities=9% Similarity=0.088 Sum_probs=66.5
Q ss_pred cccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCC
Q 006951 318 VEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGE 397 (624)
Q Consensus 318 I~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~ 397 (624)
+...|....++..|+++|-++.++|++.-.++..++.-+ .|-+.|+.|+.+ . .++ .++
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l---------gl~~~~~~IvSN--~----------L~f-~~d 177 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA---------GVYHPNVKVVSN--F----------MDF-DED 177 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc---------CCCCcCceEEee--e----------EEE-CCC
Confidence 445789999999999999999999999999999998864 254555444332 1 112 122
Q ss_pred CceeccccCCCCccccCCCHHHH----HHHhC--CCCCcEEEEcCcccccccccccc
Q 006951 398 GLMRPCFKARTGGLYSGGSAQMI----ENSLN--IHGDEILYVGDHIYTDVSQSKVH 448 (624)
Q Consensus 398 g~l~~~~~l~~G~VYsgGn~~~l----~~llg--~~G~~VLYfGDHIy~DIl~sKk~ 448 (624)
|.+... ...-|-++|....+ .+.++ ....+|++|||.+- |+.-..-.
T Consensus 178 GvltG~---~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~-Dl~ma~g~ 230 (277)
T TIGR01544 178 GVLKGF---KGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQG-DLRMADGV 230 (277)
T ss_pred CeEeCC---CCCcccccccHHHHHHHHHHHhCccCCcceEEEECcChh-hhhHhcCC
Confidence 332210 11123334444433 33455 55678999999985 77765543
No 114
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=73.05 E-value=3.3 Score=40.81 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=23.3
Q ss_pred HHHHHHHhCCCCCcEEEEcCccccccccccc
Q 006951 417 AQMIENSLNIHGDEILYVGDHIYTDVSQSKV 447 (624)
Q Consensus 417 ~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk 447 (624)
...+.+.+|+...++++|||..- |+--.+.
T Consensus 152 i~~l~~~~~i~~~~~i~iGDs~N-D~~ml~~ 181 (215)
T TIGR01487 152 VEKLKELLGIKPEEVAAIGDSEN-DIDLFRV 181 (215)
T ss_pred HHHHHHHhCCCHHHEEEECCCHH-HHHHHHh
Confidence 45667778999899999999876 7765543
No 115
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=71.59 E-value=3.2 Score=42.16 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=26.6
Q ss_pred CCcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCCC
Q 006951 147 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 186 (624)
Q Consensus 147 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 186 (624)
.++.+-||||+||...+.. ...- -..+++++.+.|.+.
T Consensus 2 ~~kli~~DlDGTLl~~~~~-i~~~-~~~al~~~~~~g~~v 39 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKT-ISPE-TKEALARLREKGVKV 39 (264)
T ss_pred CeeEEEEcCCCCccCCCCc-cCHH-HHHHHHHHHHCCCEE
Confidence 5789999999999999976 2222 222334666788873
No 116
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=70.13 E-value=2.3 Score=42.93 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=17.3
Q ss_pred ccCCCcEEEEecccceeecCc
Q 006951 144 NLRSISAIGYDMDYTLMHYNV 164 (624)
Q Consensus 144 ~L~~I~~iGFDmDYTLa~Y~~ 164 (624)
.|..|++|-||||+||+--.+
T Consensus 6 ~~~~~k~iiFDlDGTL~D~~~ 26 (238)
T PRK10748 6 PLGRISALTFDLDDTLYDNRP 26 (238)
T ss_pred CCCCceeEEEcCcccccCChH
Confidence 356799999999999997653
No 117
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=68.97 E-value=5.2 Score=41.98 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=26.3
Q ss_pred CCCcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 146 RSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 146 ~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
+.+++|-||||+||+-... .+.++...+.+.++|+|
T Consensus 38 ~~~k~VIFDlDGTLvDS~~----~~~~~a~~~~l~~~G~~ 73 (286)
T PLN02779 38 ALPEALLFDCDGVLVETER----DGHRVAFNDAFKEFGLR 73 (286)
T ss_pred cCCcEEEEeCceeEEcccc----HHHHHHHHHHHHHcCCC
Confidence 4579999999999997641 34555555566778985
No 118
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=67.62 E-value=7.1 Score=44.97 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=32.4
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006951 322 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 322 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 356 (624)
|+...++++|++.|.++.++||.+-.++..+++.+
T Consensus 408 ~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l 442 (562)
T TIGR01511 408 PEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL 442 (562)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc
Confidence 56788999999999999999999999999999987
No 119
>PRK09449 dUMP phosphatase; Provisional
Probab=67.08 E-value=4.9 Score=39.57 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=21.4
Q ss_pred CCcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 147 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 147 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
.|++|-||||+||+.+.. ++.+.+.+...|++
T Consensus 2 ~~k~iiFDlDGTLid~~~-------~~~~~~~~~~~g~~ 33 (224)
T PRK09449 2 KYDWILFDADETLFHFDA-------FAGLQRMFSRYGVD 33 (224)
T ss_pred CccEEEEcCCCchhcchh-------hHHHHHHHHHhCCC
Confidence 489999999999997432 23333334556765
No 120
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=67.07 E-value=9.2 Score=40.98 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=54.9
Q ss_pred CcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCC
Q 006951 313 KPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMS 387 (624)
Q Consensus 313 npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~ 387 (624)
+-+.=-.++|.+..-|.+|++.|..|.|=+-..-+++...|+-+- =.++||+||+..+|-+-....
T Consensus 136 d~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~---------L~~~Fd~ii~~G~~~~~~~~~ 201 (297)
T PF05152_consen 136 DEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELK---------LEGYFDIIICGGNKAGEYNSR 201 (297)
T ss_pred cCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhC---------CccccEEEEeCCccCCcCCcc
Confidence 333334688999999999999999999999999999999999762 238999999999998777654
No 121
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=64.93 E-value=7.2 Score=39.11 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=25.1
Q ss_pred CCcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 147 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 147 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
-++++-||||+||+--. .+..+...+.+.++|+|
T Consensus 11 ~~k~viFD~DGTL~Ds~-----~~~~~a~~~~~~~~g~~ 44 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSA-----PDMLATVNAMLAARGRA 44 (229)
T ss_pred cCCEEEEcCcCccccCH-----HHHHHHHHHHHHHCCCC
Confidence 45799999999999753 34555555566778887
No 122
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=63.40 E-value=7.4 Score=37.91 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=15.8
Q ss_pred CcEEEEecccceeecCcc
Q 006951 148 ISAIGYDMDYTLMHYNVM 165 (624)
Q Consensus 148 I~~iGFDmDYTLa~Y~~~ 165 (624)
|+++-||||+||+.+...
T Consensus 1 ~k~viFD~DGTL~d~~~~ 18 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAA 18 (224)
T ss_pred CCEEEEcCcCcccccchH
Confidence 688999999999998763
No 123
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=63.07 E-value=11 Score=35.37 Aligned_cols=100 Identities=9% Similarity=0.112 Sum_probs=64.2
Q ss_pred cchhhhHHHHHcCccccc--ccCCCchHHHHHHHHhCCeEEEEeCCChHHHH------------HhhcccccccCCCCCC
Q 006951 301 HVEGQLKSEIMSKPELFV--EPDPELPLALLDQKEAGKKLLLITNSDYHYTD------------KMMQHSFNRFLPNDMG 366 (624)
Q Consensus 301 H~~G~lk~~v~~npeKYI--~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn------------~vM~Yl~~~~l~~g~d 366 (624)
-.+|+| +..+.+.|. ...++....|.++++.|-+++++|.-+..... .+..++- .
T Consensus 7 DiDGTL---~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~--------k 75 (126)
T TIGR01689 7 DLDNTI---TLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLN--------Q 75 (126)
T ss_pred eCCCCc---ccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHH--------H
Confidence 457877 333445564 34567777888888999999999999988876 6677663 3
Q ss_pred CCCCccEEEEccCCC---CCCCCCCccEEEeCCCCceeccccCCCCccccCCCHHHHHHHhCCCC
Q 006951 367 WRDLFNMVIVSARKP---EFFQMSHPLYEVVTGEGLMRPCFKARTGGLYSGGSAQMIENSLNIHG 428 (624)
Q Consensus 367 WrdyFDvVIv~ArKP---~FF~e~~pf~~v~~~~g~l~~~~~l~~G~VYsgGn~~~l~~llg~~G 428 (624)
|.=-||=|++..--| +|+-+.+-. +...+.+=|..++++|++...
T Consensus 76 ~~ipYd~l~~~kp~~~~~~~~~dD~~i-----------------r~~~~~~~~~~~~~~~~~~~~ 123 (126)
T TIGR01689 76 HNVPYDEIYVGKPWCGHDGFYVDDRAI-----------------RPSEFSSLTYDEINTLTKIDK 123 (126)
T ss_pred cCCCCceEEeCCCcCCCCCceecchhh-----------------CHHHHHhcCHHHHHHHHhhcc
Confidence 666678777753322 344433321 233455566677777776543
No 124
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=62.29 E-value=4.7 Score=36.52 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=22.2
Q ss_pred cEEEEecccceee---cCccchHHHHHHHHH---HHHhhcCCC
Q 006951 149 SAIGYDMDYTLMH---YNVMAWEGRAYDYCM---VNLRNMGFP 185 (624)
Q Consensus 149 ~~iGFDmDYTLa~---Y~~~~~e~L~y~~~~---~~Lv~~gYP 185 (624)
+++-||||+||.. |..+.-+...|..+. +.|.+.||+
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~ 43 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYK 43 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCE
Confidence 5788999999994 222222233444443 445567777
No 125
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=61.11 E-value=11 Score=36.19 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=20.0
Q ss_pred cEEEEecccceeecCccchHHHHHHHHH-HHH-hhcCCC
Q 006951 149 SAIGYDMDYTLMHYNVMAWEGRAYDYCM-VNL-RNMGFP 185 (624)
Q Consensus 149 ~~iGFDmDYTLa~Y~~~~~e~L~y~~~~-~~L-v~~gYP 185 (624)
+++-||||+||+--... +. -+++.++ +.+ ...|.|
T Consensus 1 ~~viFDlDGTL~ds~~~-~~-~~~~~~~~~~~~~~~g~~ 37 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAG-IF-LQIDRNITEFVAARLKLS 37 (184)
T ss_pred CeEEEeCCCCCCCCccc-HH-HHHHHHHHHHHHHHcCcC
Confidence 57899999999943322 12 2333332 333 356776
No 126
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=58.45 E-value=9.2 Score=38.84 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=25.6
Q ss_pred CCcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 147 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 147 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
.|+.+.||||+||...+. .+..-.. .++++|.+.|++
T Consensus 2 ~~kli~~DlDGTLl~~~~-~i~~~~~-~ai~~l~~~G~~ 38 (270)
T PRK10513 2 AIKLIAIDMDGTLLLPDH-TISPAVK-QAIAAARAKGVN 38 (270)
T ss_pred ceEEEEEecCCcCcCCCC-ccCHHHH-HHHHHHHHCCCE
Confidence 478999999999997643 2333333 345667788877
No 127
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=57.98 E-value=12 Score=36.31 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=20.3
Q ss_pred cEEEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 149 SAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 149 ~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
+++-||||+||+.-... ...++..+ +.++|.|
T Consensus 1 k~viFDlDGTL~d~~~~--~~~a~~~~---~~~~g~~ 32 (203)
T TIGR02252 1 KLITFDAVGTLLALKEP--VGEVYCEI---ARKYGVE 32 (203)
T ss_pred CeEEEecCCceeeeCCC--HHHHHHHH---HHHhCCC
Confidence 47899999999986532 22234333 3456776
No 128
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=57.87 E-value=9.8 Score=37.51 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=26.4
Q ss_pred CHHHHHHHhCCCCCcEEEEcCcccccccccccccCce
Q 006951 416 SAQMIENSLNIHGDEILYVGDHIYTDVSQSKVHLRWR 452 (624)
Q Consensus 416 n~~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~~gWR 452 (624)
-+..+++.+|....++++|||..- |+--.+. .|+-
T Consensus 161 al~~l~~~~~i~~~~~i~~GD~~N-Di~m~~~-ag~~ 195 (230)
T PRK01158 161 GLKKLAELMGIDPEEVAAIGDSEN-DLEMFEV-AGFG 195 (230)
T ss_pred HHHHHHHHhCCCHHHEEEECCchh-hHHHHHh-cCce
Confidence 345778888998899999999876 8776653 3553
No 129
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=56.53 E-value=12 Score=38.84 Aligned_cols=34 Identities=21% Similarity=0.127 Sum_probs=22.7
Q ss_pred CCcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 147 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 147 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
=|+++-||||+||+.-. ....+...+.+.+.|.|
T Consensus 12 ~~k~viFDlDGTL~Ds~-----~~~~~a~~~~~~~~g~~ 45 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSV-----PDLAAAVDRMLLELGRP 45 (272)
T ss_pred cCCEEEEcCCCccccCH-----HHHHHHHHHHHHHcCCC
Confidence 46699999999998643 23444444445567776
No 130
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=56.45 E-value=35 Score=34.53 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=36.5
Q ss_pred ccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006951 315 ELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 315 eKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 356 (624)
+.|+.--|....++..+++.|-++++||.|.-.+++.++..+
T Consensus 73 ~~~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l 114 (212)
T COG0560 73 EEFLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL 114 (212)
T ss_pred HhcCcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh
Confidence 334555678889999999999999999999999999999977
No 131
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=56.19 E-value=8.3 Score=36.31 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=13.1
Q ss_pred cEEEEecccceeecC
Q 006951 149 SAIGYDMDYTLMHYN 163 (624)
Q Consensus 149 ~~iGFDmDYTLa~Y~ 163 (624)
++|.||+|+||+..+
T Consensus 2 K~i~~DiDGTL~~~~ 16 (126)
T TIGR01689 2 KRLVMDLDNTITLTE 16 (126)
T ss_pred CEEEEeCCCCcccCC
Confidence 689999999998764
No 132
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=55.43 E-value=6.8 Score=39.42 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=16.6
Q ss_pred cccCCCcEEEEecccceeec
Q 006951 143 LNLRSISAIGYDMDYTLMHY 162 (624)
Q Consensus 143 L~L~~I~~iGFDmDYTLa~Y 162 (624)
+....|++|-||||+||+-.
T Consensus 5 ~~~~~~k~vIFDlDGTL~d~ 24 (224)
T PRK14988 5 IAWQDVDTVLLDMDGTLLDL 24 (224)
T ss_pred CCcccCCEEEEcCCCCccch
Confidence 34557899999999999983
No 133
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=55.05 E-value=12 Score=35.37 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=14.2
Q ss_pred CcEEEEecccceeecC
Q 006951 148 ISAIGYDMDYTLMHYN 163 (624)
Q Consensus 148 I~~iGFDmDYTLa~Y~ 163 (624)
|++|-||+|+||+-..
T Consensus 1 ~~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTA 16 (185)
T ss_pred CCeEEEcCCCcccCCh
Confidence 5789999999999875
No 134
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=54.80 E-value=10 Score=36.59 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=28.2
Q ss_pred HcCcccccccCCCchHHHHHHHHhCCeEEEEeCC
Q 006951 311 MSKPELFVEPDPELPLALLDQKEAGKKLLLITNS 344 (624)
Q Consensus 311 ~~npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS 344 (624)
..+|+.++.-.|.++..|.++.+.|.+++++||-
T Consensus 21 ~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 21 PKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp -SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred cCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 3468888878888999999999999999999995
No 135
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=52.92 E-value=13 Score=40.16 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=31.1
Q ss_pred CccccCCCcEEEEecccceeecCccc-h-HHHHHHHHHHHHhhcCCCCCCC
Q 006951 141 RTLNLRSISAIGYDMDYTLMHYNVMA-W-EGRAYDYCMVNLRNMGFPVEGL 189 (624)
Q Consensus 141 r~L~L~~I~~iGFDmDYTLa~Y~~~~-~-e~L~y~~~~~~Lv~~gYP~~~L 189 (624)
.++-.+-.++|.||||+||..=..+. . ..-+.+ +++.|.+.|+|.-+.
T Consensus 119 ~~~~~~~~kvIvFDLDgTLi~~~~~v~irdPgV~E-aL~~LkekGikLaIa 168 (301)
T TIGR01684 119 PSKVFEPPHVVVFDLDSTLITDEEPVRIRDPRIYD-SLTELKKRGCILVLW 168 (301)
T ss_pred cccccccceEEEEecCCCCcCCCCccccCCHHHHH-HHHHHHHCCCEEEEE
Confidence 34556677899999999998765321 1 122333 467788889885433
No 136
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=52.91 E-value=11 Score=36.36 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=14.9
Q ss_pred hCCCCCcEEEEcCccccccccc
Q 006951 424 LNIHGDEILYVGDHIYTDVSQS 445 (624)
Q Consensus 424 lg~~G~~VLYfGDHIy~DIl~s 445 (624)
++..+.+++||||.. .|+.-.
T Consensus 140 ~~~~~~~~v~iGDs~-~D~~~~ 160 (205)
T PRK13582 140 LKSLGYRVIAAGDSY-NDTTML 160 (205)
T ss_pred HHHhCCeEEEEeCCH-HHHHHH
Confidence 344457899999996 786433
No 137
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=52.55 E-value=14 Score=38.12 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCC-CcEEEEcCcccccccccccccCceE
Q 006951 417 AQMIENSLNIHG-DEILYVGDHIYTDVSQSKVHLRWRT 453 (624)
Q Consensus 417 ~~~l~~llg~~G-~~VLYfGDHIy~DIl~sKk~~gWRT 453 (624)
...+.+.+|... .+|++|||..- |+--.+ ..|...
T Consensus 195 l~~l~~~~~i~~~~~v~~~GDs~N-Di~m~~-~ag~~v 230 (273)
T PRK00192 195 VRWLKELYRRQDGVETIALGDSPN-DLPMLE-AADIAV 230 (273)
T ss_pred HHHHHHHHhccCCceEEEEcCChh-hHHHHH-hCCeeE
Confidence 567788889998 99999999987 765444 345443
No 138
>PTZ00174 phosphomannomutase; Provisional
Probab=52.42 E-value=16 Score=37.27 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=25.9
Q ss_pred CCcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 147 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 147 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
+++.|.||||+||..-+.. +..-. ..++++|.+.|..
T Consensus 4 ~~klia~DlDGTLL~~~~~-is~~~-~~ai~~l~~~Gi~ 40 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNP-ITQEM-KDTLAKLKSKGFK 40 (247)
T ss_pred CCeEEEEECcCCCcCCCCC-CCHHH-HHHHHHHHHCCCE
Confidence 4899999999999976543 33333 3445667777775
No 139
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=52.39 E-value=8.1 Score=37.32 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=12.7
Q ss_pred cEEEEecccceeecCcc
Q 006951 149 SAIGYDMDYTLMHYNVM 165 (624)
Q Consensus 149 ~~iGFDmDYTLa~Y~~~ 165 (624)
++.+||+|+||+.-++.
T Consensus 1 Kia~fD~DgTLi~~~s~ 17 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSG 17 (159)
T ss_dssp SEEEE-SCTTTEE-STS
T ss_pred CEEEEeCCCCccCCCCC
Confidence 57899999999998764
No 140
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=51.63 E-value=16 Score=34.77 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=24.3
Q ss_pred CcEEEEecccceee----cCccc--hHHHHH--HHHHHHHhhcCCCC
Q 006951 148 ISAIGYDMDYTLMH----YNVMA--WEGRAY--DYCMVNLRNMGFPV 186 (624)
Q Consensus 148 I~~iGFDmDYTLa~----Y~~~~--~e~L~y--~~~~~~Lv~~gYP~ 186 (624)
|+++-||+|+||.. |.... ...+-+ ..+++.|.+.||..
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~~~i~~Lk~~G~~i 47 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDGYGIRCALKSGIEV 47 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhHHHHHHHHHCCCEE
Confidence 67899999999998 43331 111100 12677887777763
No 141
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=51.19 E-value=13 Score=40.03 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=47.2
Q ss_pred hhchhHHHHHHHHHHHhhhCCCCCCCCCCChHHHHHHHHHHHHhccchhhhHHHHHcCcccccc------c--CCCchHH
Q 006951 256 LFSVSEAVAYMQMVNRLDEGAIGPELGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSKPELFVE------P--DPELPLA 327 (624)
Q Consensus 256 lFslpEa~L~a~lVd~~d~~~~~~~l~~~~y~~l~~DV~~Av~~vH~~G~lk~~v~~npeKYI~------k--dp~l~~~ 327 (624)
.......|+|+++ -.+....+....++.-.+|.+.++.-+...+ + .+---.||- + +|.|..+
T Consensus 31 ~~~Cs~~CvyC~~--G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g-~-------ea~~pd~vtis~~GEPTLy~~L~el 100 (296)
T COG0731 31 KKWCSYNCVYCWR--GRTKKGTPERPEFIVEESILEELKLLLGYKG-D-------EATEPDHVTISLSGEPTLYPNLGEL 100 (296)
T ss_pred hhhhcCCCeEEec--ccCCCCCCCCCceecHHHHHHHHHHHhcccc-c-------ccCCCCEEEEeCCCCcccccCHHHH
Confidence 3344556888877 1111111111124556677777766554433 0 111223331 1 4678888
Q ss_pred HHHHHHhC-CeEEEEeCCCh
Q 006951 328 LLDQKEAG-KKLLLITNSDY 346 (624)
Q Consensus 328 L~~lr~~G-KKlFLiTNS~~ 346 (624)
++.+++.| +++|||||+.-
T Consensus 101 I~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 101 IEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred HHHHHhcCCceEEEEeCCCh
Confidence 88899999 79999999988
No 142
>PRK10976 putative hydrolase; Provisional
Probab=51.14 E-value=15 Score=37.26 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=25.3
Q ss_pred CcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 148 ISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 148 I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
|+.+.+|||+||..-+. .+..-.. .++++|.+.|.+
T Consensus 2 ikli~~DlDGTLl~~~~-~is~~~~-~ai~~l~~~G~~ 37 (266)
T PRK10976 2 YQVVASDLDGTLLSPDH-TLSPYAK-ETLKLLTARGIH 37 (266)
T ss_pred ceEEEEeCCCCCcCCCC-cCCHHHH-HHHHHHHHCCCE
Confidence 78999999999997653 2333333 345667788887
No 143
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=49.61 E-value=14 Score=35.78 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=24.2
Q ss_pred CCcEEEEecccceeecCccc-h----HHH--HHHHH---HHHHhhcCCCC
Q 006951 147 SISAIGYDMDYTLMHYNVMA-W----EGR--AYDYC---MVNLRNMGFPV 186 (624)
Q Consensus 147 ~I~~iGFDmDYTLa~Y~~~~-~----e~L--~y~~~---~~~Lv~~gYP~ 186 (624)
..+++-||+|+||...++.. + +.. .|+.+ ++.|.+.||+.
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l 61 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKI 61 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEE
Confidence 45889999999999744311 1 111 23333 45566778874
No 144
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=49.52 E-value=13 Score=31.93 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=12.4
Q ss_pred EEEEecccceeecCc
Q 006951 150 AIGYDMDYTLMHYNV 164 (624)
Q Consensus 150 ~iGFDmDYTLa~Y~~ 164 (624)
++-||+|+||+.-++
T Consensus 1 ~~vfD~D~tl~~~~~ 15 (139)
T cd01427 1 AVLFDLDGTLLDSEP 15 (139)
T ss_pred CeEEccCCceEccCc
Confidence 367999999988774
No 145
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=49.39 E-value=15 Score=35.69 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=18.4
Q ss_pred EEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 151 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 151 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
+-||||+||+-- +...++...+.+.+.|.|
T Consensus 1 viFD~DGTL~Ds-----~~~~~~~~~~~~~~~~~~ 30 (213)
T TIGR01449 1 VLFDLDGTLVDS-----APDIAAAVNMALAALGLP 30 (213)
T ss_pred CeecCCCccccC-----HHHHHHHHHHHHHHCCCC
Confidence 359999999952 223344334445567776
No 146
>PLN02645 phosphoglycolate phosphatase
Probab=49.26 E-value=18 Score=38.43 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=40.2
Q ss_pred ccchhhhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEcc
Q 006951 300 AHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSA 378 (624)
Q Consensus 300 vH~~G~lk~~v~~npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~A 378 (624)
.-.+|.|+.. ..+ =|.....|.+|+++||+++++||.+..-...+.+.+-. + | -.-.+|-|++.+
T Consensus 33 ~D~DGtl~~~------~~~--~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~--l--G--i~~~~~~I~ts~ 97 (311)
T PLN02645 33 FDCDGVIWKG------DKL--IEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFES--L--G--LNVTEEEIFSSS 97 (311)
T ss_pred EeCcCCeEeC------Ccc--CcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHH--C--C--CCCChhhEeehH
Confidence 3467888652 112 26678999999999999999999774444333332211 0 1 224566666664
No 147
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=49.13 E-value=15 Score=37.27 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=22.6
Q ss_pred EEEEecccceeecCccchHHHHHHHHHHHHhhcCCCC
Q 006951 150 AIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 186 (624)
Q Consensus 150 ~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 186 (624)
+|-||||+||.. ....... -..++++|.+.|.|.
T Consensus 1 li~~DlDGTLl~-~~~~~~~--~~~ai~~l~~~G~~~ 34 (225)
T TIGR02461 1 VIFTDLDGTLLP-PGYEPGP--AREALEELKDLGFPI 34 (225)
T ss_pred CEEEeCCCCCcC-CCCCchH--HHHHHHHHHHCCCEE
Confidence 367999999998 3333332 244556777788883
No 148
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=48.62 E-value=9.6 Score=37.37 Aligned_cols=19 Identities=42% Similarity=0.585 Sum_probs=16.2
Q ss_pred cCCCcEEEEecccceeecC
Q 006951 145 LRSISAIGYDMDYTLMHYN 163 (624)
Q Consensus 145 L~~I~~iGFDmDYTLa~Y~ 163 (624)
++.++++-||||+||+...
T Consensus 11 ~~~~k~iiFD~DGTL~~~~ 29 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAE 29 (219)
T ss_pred hccCCEEEEeCcccCCCch
Confidence 5668899999999999863
No 149
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=47.87 E-value=15 Score=37.55 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=20.9
Q ss_pred CHHHHHHHhCCCCCcEEEEcCcccccc
Q 006951 416 SAQMIENSLNIHGDEILYVGDHIYTDV 442 (624)
Q Consensus 416 n~~~l~~llg~~G~~VLYfGDHIy~DI 442 (624)
-+..|++.+|+...+|+-|||.- -||
T Consensus 192 al~~l~~~~gi~~~~v~afGD~~-NDi 217 (272)
T PRK15126 192 ALAVLSQHLGLSLADCMAFGDAM-NDR 217 (272)
T ss_pred HHHHHHHHhCCCHHHeEEecCCH-HHH
Confidence 35678999999999999999973 344
No 150
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=45.57 E-value=19 Score=38.92 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=31.0
Q ss_pred ccccCCCcEEEEecccceeecCccc-h-HHHHHHHHHHHHhhcCCCCCCCC
Q 006951 142 TLNLRSISAIGYDMDYTLMHYNVMA-W-EGRAYDYCMVNLRNMGFPVEGLA 190 (624)
Q Consensus 142 ~L~L~~I~~iGFDmDYTLa~Y~~~~-~-e~L~y~~~~~~Lv~~gYP~~~L~ 190 (624)
++-.+-.++++||||+||..=..+. . ..-+++ +++.|.+.|++.....
T Consensus 122 ~~~~~~~~~i~~D~D~TL~~~~~~v~irdp~V~E-tL~eLkekGikLaIvT 171 (303)
T PHA03398 122 SLVWEIPHVIVFDLDSTLITDEEPVRIRDPFVYD-SLDELKERGCVLVLWS 171 (303)
T ss_pred eeEeeeccEEEEecCCCccCCCCccccCChhHHH-HHHHHHHCCCEEEEEc
Confidence 3444566899999999998765321 1 133455 4567888898854333
No 151
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=45.32 E-value=21 Score=35.16 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=0.0
Q ss_pred EEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 151 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 151 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
|.+|||+||..-+...... -..+++.|.+.|.|
T Consensus 2 i~~DlDGTLL~~~~~~~~~--~~~~l~~l~~~gi~ 34 (221)
T TIGR02463 2 VFSDLDGTLLDSHSYDWQP--AAPWLTRLQEAGIP 34 (221)
T ss_pred EEEeCCCCCcCCCCCCcHH--HHHHHHHHHHCCCe
No 152
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=44.49 E-value=17 Score=35.04 Aligned_cols=14 Identities=21% Similarity=0.225 Sum_probs=11.7
Q ss_pred EEEEecccceeecC
Q 006951 150 AIGYDMDYTLMHYN 163 (624)
Q Consensus 150 ~iGFDmDYTLa~Y~ 163 (624)
+|-||||+||....
T Consensus 1 iVisDIDGTL~~sd 14 (157)
T smart00775 1 IVISDIDGTITKSD 14 (157)
T ss_pred CEEEecCCCCcccc
Confidence 36799999999775
No 153
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=44.39 E-value=18 Score=34.11 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=20.1
Q ss_pred EEEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 150 AIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 150 ~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
++-||+|+||+.... ..+....+-+.++|+|
T Consensus 1 ~iiFD~DGTL~ds~~-----~~~~~~~~~~~~~g~~ 31 (185)
T TIGR01990 1 AVIFDLDGVITDTAE-----YHYLAWKALADELGIP 31 (185)
T ss_pred CeEEcCCCccccChH-----HHHHHHHHHHHHcCCC
Confidence 367999999997653 3444444434567776
No 154
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=43.59 E-value=15 Score=35.97 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=0.0
Q ss_pred EEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 151 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 151 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
|.||||+||. +...--.-....++++|.+.|.+
T Consensus 1 i~~DlDGTLl--~~~~~i~~~~~~al~~l~~~Gi~ 33 (225)
T TIGR01482 1 IASDIDGTLT--DPNRAINESALEAIRKAESVGIP 33 (225)
T ss_pred CeEeccCccC--CCCcccCHHHHHHHHHHHHCCCE
No 155
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=40.59 E-value=75 Score=33.14 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=39.8
Q ss_pred cCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccccc
Q 006951 312 SKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFN 358 (624)
Q Consensus 312 ~npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~ 358 (624)
....++..-+++++.++..|.+.|..++-+|-.+-.+.+..+++|-.
T Consensus 74 ~~~~~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~ 120 (252)
T PF11019_consen 74 FELRKMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKS 120 (252)
T ss_pred HhhcceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHH
Confidence 33445555677899999999999999999999999999999998863
No 156
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=39.96 E-value=26 Score=34.26 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.2
Q ss_pred cCCCcEEEEecccceeecCccch
Q 006951 145 LRSISAIGYDMDYTLMHYNVMAW 167 (624)
Q Consensus 145 L~~I~~iGFDmDYTLa~Y~~~~~ 167 (624)
|..|+++.||+|+||........
T Consensus 1 ~~~~k~i~FD~d~TL~d~~~~~~ 23 (229)
T COG1011 1 MMMIKAILFDLDGTLLDFDSAEF 23 (229)
T ss_pred CCceeEEEEecCCcccccchHHh
Confidence 45789999999999999876543
No 157
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=39.30 E-value=27 Score=36.03 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.6
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChH
Q 006951 321 DPELPLALLDQKEAGKKLLLITNSDYH 347 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTNS~~~ 347 (624)
-|.....+.+|+++|++++++||.+..
T Consensus 23 ~~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 23 VPGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 467888999999999999999997665
No 158
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=38.31 E-value=32 Score=31.66 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=12.3
Q ss_pred cEEEEecccceeec
Q 006951 149 SAIGYDMDYTLMHY 162 (624)
Q Consensus 149 ~~iGFDmDYTLa~Y 162 (624)
+++-||+||||...
T Consensus 1 kli~~DlD~Tl~~~ 14 (128)
T TIGR01681 1 KVIVFDLDNTLWTG 14 (128)
T ss_pred CEEEEeCCCCCCCC
Confidence 46889999999977
No 159
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=38.22 E-value=17 Score=35.13 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.7
Q ss_pred CcEEEEecccceeecCc
Q 006951 148 ISAIGYDMDYTLMHYNV 164 (624)
Q Consensus 148 I~~iGFDmDYTLa~Y~~ 164 (624)
|++|-||||+||+-+.+
T Consensus 1 ik~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHS 17 (198)
T ss_pred CcEEEEeCCCcCccHHH
Confidence 57899999999998763
No 160
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=37.52 E-value=29 Score=35.49 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=74.4
Q ss_pred HHHHHHHHH----HHhccchhhhHHHHHcCccccccc---------------CCCchHHHHHHHHhCCeEEEEeCCChHH
Q 006951 288 GLYKAVGKA----LFRAHVEGQLKSEIMSKPELFVEP---------------DPELPLALLDQKEAGKKLLLITNSDYHY 348 (624)
Q Consensus 288 ~l~~DV~~A----v~~vH~~G~lk~~v~~npeKYI~k---------------dp~l~~~L~~lr~~GKKlFLiTNS~~~Y 348 (624)
.+.+++++. ...|| | ..+||++||.. .+.+..+|..+|+.|+|.-|.-|-.-+.
T Consensus 47 ~~i~~i~~~~~~~~~dvH----L---Mv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~ 119 (220)
T PRK08883 47 PICKALRDYGITAPIDVH----L---MVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPL 119 (220)
T ss_pred HHHHHHHHhCCCCCEEEE----e---ccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 455666653 24567 2 45677777633 3457788999999999999998877544
Q ss_pred HHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCceeccccC--CC---CccccCCCHH--HHH
Q 006951 349 TDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKA--RT---GGLYSGGSAQ--MIE 421 (624)
Q Consensus 349 tn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~l~~~~~l--~~---G~VYsgGn~~--~l~ 421 (624)
... .++ -++-|.|.+-+--|+|-.. +|.....+ +++...++ ++ -.|...|... .+.
T Consensus 120 ~~i--~~~-----------l~~~D~vlvMtV~PGfgGq--~fi~~~le--kI~~l~~~~~~~~~~~~I~vdGGI~~eni~ 182 (220)
T PRK08883 120 HHL--EYI-----------MDKVDLILLMSVNPGFGGQ--SFIPHTLD--KLRAVRKMIDESGRDIRLEIDGGVKVDNIR 182 (220)
T ss_pred HHH--HHH-----------HHhCCeEEEEEecCCCCCc--eecHhHHH--HHHHHHHHHHhcCCCeeEEEECCCCHHHHH
Confidence 332 222 3478999999999999643 33221111 11111111 11 2244555443 333
Q ss_pred HHhCCCCCcEEEEcCcccc
Q 006951 422 NSLNIHGDEILYVGDHIYT 440 (624)
Q Consensus 422 ~llg~~G~~VLYfGDHIy~ 440 (624)
++ -..|.+++-+|=-||+
T Consensus 183 ~l-~~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 183 EI-AEAGADMFVAGSAIFG 200 (220)
T ss_pred HH-HHcCCCEEEEeHHHhC
Confidence 33 3457888888866654
No 161
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=36.99 E-value=4.7e+02 Score=27.03 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=49.7
Q ss_pred HHhccchhhhHHHHHcCcccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccccc
Q 006951 297 LFRAHVEGQLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFN 358 (624)
Q Consensus 297 v~~vH~~G~lk~~v~~npeKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~ 358 (624)
...+|.+ + +++.+.+.+=|.-||....+....++++-.+.+++..-=.|+..+.+-++|
T Consensus 54 f~~i~~s--~-~Eile~llk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivg 112 (220)
T COG4359 54 FGSIHSS--L-EEILEFLLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVG 112 (220)
T ss_pred HHhcCCC--H-HHHHHHHHhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcc
Confidence 4566744 4 789999999889999999999999999998888888777888888888875
No 162
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=36.86 E-value=34 Score=32.92 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=22.3
Q ss_pred cEEEEecccceeecC--ccchHHH-HH---HHHHHHHhhcCCCC
Q 006951 149 SAIGYDMDYTLMHYN--VMAWEGR-AY---DYCMVNLRNMGFPV 186 (624)
Q Consensus 149 ~~iGFDmDYTLa~Y~--~~~~e~L-~y---~~~~~~Lv~~gYP~ 186 (624)
+++-||.|+||+... ....+.+ .| ..+++.|.+.||+.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l 45 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYAL 45 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEE
Confidence 678999999999321 1122232 12 22445666778873
No 163
>PLN02887 hydrolase family protein
Probab=35.96 E-value=36 Score=39.86 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=25.7
Q ss_pred CCcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 147 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 147 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
+|+.|.||||+||..-+.. +..-.. .++++|.+.|..
T Consensus 307 ~iKLIa~DLDGTLLn~d~~-Is~~t~-eAI~kl~ekGi~ 343 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSKSQ-ISETNA-KALKEALSRGVK 343 (580)
T ss_pred CccEEEEeCCCCCCCCCCc-cCHHHH-HHHHHHHHCCCe
Confidence 7999999999999975432 322222 345667778887
No 164
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=35.62 E-value=19 Score=34.33 Aligned_cols=17 Identities=35% Similarity=0.348 Sum_probs=14.9
Q ss_pred CcEEEEecccceeecCc
Q 006951 148 ISAIGYDMDYTLMHYNV 164 (624)
Q Consensus 148 I~~iGFDmDYTLa~Y~~ 164 (624)
|+.+-||+|+||+.-.+
T Consensus 4 ~k~viFD~DGTLid~~~ 20 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVMS 20 (201)
T ss_pred ceEEEEeCCCCCcCCcc
Confidence 78899999999998653
No 165
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=35.55 E-value=32 Score=32.53 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006951 322 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 322 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 356 (624)
|+...++..++++|.+++++|.|+-.++..++.++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~ 126 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERL 126 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 77779999999999999999999999999998744
No 166
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=34.69 E-value=20 Score=35.05 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=18.1
Q ss_pred cCCCchHHHHHHHHhCCeEEEEeCCChH
Q 006951 320 PDPELPLALLDQKEAGKKLLLITNSDYH 347 (624)
Q Consensus 320 kdp~l~~~L~~lr~~GKKlFLiTNS~~~ 347 (624)
+-|.....|.+|++.|-.+++||.++..
T Consensus 74 p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 74 PIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred ccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 4456677778888777566667766665
No 167
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=34.54 E-value=77 Score=32.06 Aligned_cols=51 Identities=24% Similarity=0.214 Sum_probs=37.4
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCC
Q 006951 322 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQ 385 (624)
Q Consensus 322 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~ 385 (624)
+.+..++..+|++|+|.-|.=|-....-. + +.|-++.|.|.+-+-.|+|=.
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T~~~~-----~--------~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPETPVEE-----L--------EPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS-GGG-----G--------TTTGCCSSEEEEESS-TTTSS
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCCCchH-----H--------HHHhhhcCEEEEEEecCCCCc
Confidence 45677899999999999998877654322 1 347778999999999999754
No 168
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=33.21 E-value=36 Score=35.02 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=74.5
Q ss_pred HHHHHHHHH----HHhccchhhhHHHHHcCccccccc---------------CCCchHHHHHHHHhCCeEEEEeCCChHH
Q 006951 288 GLYKAVGKA----LFRAHVEGQLKSEIMSKPELFVEP---------------DPELPLALLDQKEAGKKLLLITNSDYHY 348 (624)
Q Consensus 288 ~l~~DV~~A----v~~vH~~G~lk~~v~~npeKYI~k---------------dp~l~~~L~~lr~~GKKlFLiTNS~~~Y 348 (624)
.+.+++++. ...|| | ..+||++||.. .+.+..+|..+|+.|+|.-|.-|-.-+.
T Consensus 51 ~~i~~lr~~~~~~~~dvH----L---Mv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~ 123 (223)
T PRK08745 51 MVCQALRKHGITAPIDVH----L---MVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPV 123 (223)
T ss_pred HHHHHHHhhCCCCCEEEE----e---ccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCH
Confidence 355666654 14567 2 44577777632 3457788999999999999998875433
Q ss_pred HHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCceeccccC--C---CCccccCCCHH-HHHH
Q 006951 349 TDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKA--R---TGGLYSGGSAQ-MIEN 422 (624)
Q Consensus 349 tn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~l~~~~~l--~---~G~VYsgGn~~-~l~~ 422 (624)
- .+-. ++ ++.|.|.+-+--|+|-... |.+-.. .+++...++ + .-.|..-|... +-.+
T Consensus 124 ~-~i~~-~l-----------~~vD~VlvMtV~PGf~GQ~--fi~~~l--~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~ 186 (223)
T PRK08745 124 D-ILDW-VL-----------PELDLVLVMSVNPGFGGQA--FIPSAL--DKLRAIRKKIDALGKPIRLEIDGGVKADNIG 186 (223)
T ss_pred H-HHHH-HH-----------hhcCEEEEEEECCCCCCcc--ccHHHH--HHHHHHHHHHHhcCCCeeEEEECCCCHHHHH
Confidence 2 2223 22 3789999999999998643 211000 011110011 1 12355555443 2233
Q ss_pred HhCCCCCcEEEEcCcccc
Q 006951 423 SLNIHGDEILYVGDHIYT 440 (624)
Q Consensus 423 llg~~G~~VLYfGDHIy~ 440 (624)
.+-..|.+++-+|=-||+
T Consensus 187 ~l~~aGaDi~V~GSaiF~ 204 (223)
T PRK08745 187 AIAAAGADTFVAGSAIFN 204 (223)
T ss_pred HHHHcCCCEEEEChhhhC
Confidence 344457799999977664
No 169
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.84 E-value=81 Score=31.23 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=19.3
Q ss_pred CCCeeEecCcc------------cc---CCCcEEEEeccc
Q 006951 133 SPRGIFCSRTL------------NL---RSISAIGYDMDY 157 (624)
Q Consensus 133 ~~~~IF~Nr~L------------~L---~~I~~iGFDmDY 157 (624)
.+..|||++.- .+ ++|.++|||-+.
T Consensus 172 ~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~~ 211 (263)
T cd06280 172 RPEALVASNGLLLLGALRAVRAAGLRIPQDLALAGFDNDP 211 (263)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCCCCcEEEEEeCChh
Confidence 47899999763 12 689999999875
No 170
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=32.68 E-value=40 Score=32.46 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=32.3
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccc
Q 006951 321 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSF 357 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~ 357 (624)
.|....++.+++++|.+++++|.++|.-.+....|+-
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~ 65 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLS 65 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHH
Confidence 4678889999999999999999999999887777764
No 171
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=31.98 E-value=50 Score=33.88 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.1
Q ss_pred CCchHHHHHHHHhCCeEEEEeC
Q 006951 322 PELPLALLDQKEAGKKLLLITN 343 (624)
Q Consensus 322 p~l~~~L~~lr~~GKKlFLiTN 343 (624)
|.-...|.+|+++|++++++||
T Consensus 20 ~~a~~~l~~l~~~g~~~~~~Tn 41 (249)
T TIGR01457 20 PEAETFVHELQKRDIPYLFVTN 41 (249)
T ss_pred cCHHHHHHHHHHCCCeEEEEeC
Confidence 4678899999999999999998
No 172
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=31.61 E-value=54 Score=36.07 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=42.9
Q ss_pred CCchHHHHHHHHhC-CeEEEEeCCChHHHHHhhcccccccCCCC----CCCCCCccEEEEc
Q 006951 322 PELPLALLDQKEAG-KKLLLITNSDYHYTDKMMQHSFNRFLPND----MGWRDLFNMVIVS 377 (624)
Q Consensus 322 p~l~~~L~~lr~~G-KKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g----~dWrdyFDvVIv~ 377 (624)
|.+..|++.|-+.| .-+|-++||+|.+-...=.|+-.+.+|.| .+|-..||.+++.
T Consensus 199 pGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~s 259 (373)
T COG4850 199 PGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIES 259 (373)
T ss_pred CCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccc
Confidence 56778888887777 77999999999999999998877666766 3565555555544
No 173
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=31.37 E-value=67 Score=30.08 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=40.3
Q ss_pred cccccccCCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEE
Q 006951 314 PELFVEPDPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVI 375 (624)
Q Consensus 314 peKYI~kdp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVI 375 (624)
...+|.+-|.+..+|..+.+. ..+++.|.+.-.|++.++..+. +. +.+|+-++
T Consensus 31 ~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ld-------p~-~~~~~~~~ 83 (159)
T PF03031_consen 31 GGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALD-------PN-GKLFSRRL 83 (159)
T ss_dssp EEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHT-------TT-TSSEEEEE
T ss_pred cceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhh-------hh-cccccccc
Confidence 356778889999999999555 7899999999999999999885 22 56676666
No 174
>PLN02423 phosphomannomutase
Probab=31.30 E-value=48 Score=33.97 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=14.3
Q ss_pred CCCcEEE-EecccceeecCc
Q 006951 146 RSISAIG-YDMDYTLMHYNV 164 (624)
Q Consensus 146 ~~I~~iG-FDmDYTLa~Y~~ 164 (624)
++.+++. ||||+||..-+-
T Consensus 4 ~~~~~i~~~D~DGTLl~~~~ 23 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPRK 23 (245)
T ss_pred CccceEEEEeccCCCcCCCC
Confidence 4566666 999999996553
No 175
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=31.23 E-value=97 Score=32.36 Aligned_cols=68 Identities=25% Similarity=0.287 Sum_probs=35.9
Q ss_pred CCCeeEecCc------------ccc---CCCcEEEEecccceeecCccc-------hHHHH---HHHHHHHHhhcCCCCC
Q 006951 133 SPRGIFCSRT------------LNL---RSISAIGYDMDYTLMHYNVMA-------WEGRA---YDYCMVNLRNMGFPVE 187 (624)
Q Consensus 133 ~~~~IF~Nr~------------L~L---~~I~~iGFDmDYTLa~Y~~~~-------~e~L~---y~~~~~~Lv~~gYP~~ 187 (624)
.+..|||.+. ..+ ++|.++||| |--++.|..|. .++|+ .+++++++.....|..
T Consensus 237 ~~~ai~~~nD~~A~g~~~al~~~G~~vP~disVigfD-~~~~~~~~~p~lttv~~~~~~~g~~A~~~l~~~i~g~~~~~~ 315 (343)
T PRK10727 237 NFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFD-DVLVSRYVRPRLTTVRYPIVTMATQAAELALALADNRPLPEI 315 (343)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHcCCCCCcceeEEeec-CcHHHHhcCCCCeeeeCCHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 4678999754 233 589999998 44455554332 23443 3344444432223322
Q ss_pred CCCCCccccccceE
Q 006951 188 GLAFDPDLVIRGLV 201 (624)
Q Consensus 188 ~L~yDp~F~iRGLv 201 (624)
.....|.+..|+-+
T Consensus 316 ~~~i~~~Li~R~S~ 329 (343)
T PRK10727 316 TNVFSPTLVRRHSV 329 (343)
T ss_pred cEEeCcEEEEecCC
Confidence 22345666666543
No 176
>PRK10444 UMP phosphatase; Provisional
Probab=30.94 E-value=44 Score=34.56 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=28.4
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006951 321 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 356 (624)
-|.....+.+|++.||+++++||....=.....+.+
T Consensus 19 ~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 19 VPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 578889999999999999999999885444444433
No 177
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=30.42 E-value=26 Score=34.69 Aligned_cols=11 Identities=45% Similarity=0.918 Sum_probs=0.0
Q ss_pred cEEEEecccce
Q 006951 149 SAIGYDMDYTL 159 (624)
Q Consensus 149 ~~iGFDmDYTL 159 (624)
+.|-||+||||
T Consensus 4 klvvFDLD~Tl 14 (169)
T PF12689_consen 4 KLVVFDLDYTL 14 (169)
T ss_dssp SEEEE-STTTS
T ss_pred cEEEEcCcCCC
No 178
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=30.42 E-value=51 Score=35.69 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=25.7
Q ss_pred CcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCCC
Q 006951 148 ISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 186 (624)
Q Consensus 148 I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 186 (624)
.+.|-+|||+||..-+...++. +. -++++|.+.|.|.
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~-a~-~aL~~Lk~~GI~v 37 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGA-AR-QALAALERRSIPL 37 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHH-HH-HHHHHHHHCCCEE
Confidence 3678899999999854433433 33 3467788889983
No 179
>PRK10671 copA copper exporting ATPase; Provisional
Probab=30.13 E-value=46 Score=40.25 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=29.5
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006951 322 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 322 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 356 (624)
|.....|.+|++.|.++.++|+.+-..+..+.+.+
T Consensus 653 ~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~l 687 (834)
T PRK10671 653 SDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEA 687 (834)
T ss_pred hhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 34566788899999999999999999999888865
No 180
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.89 E-value=3e+02 Score=28.69 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=6.0
Q ss_pred hHhhHHHHHHHH
Q 006951 457 CRELEEEYNALI 468 (624)
Q Consensus 457 VpELe~Ei~v~~ 468 (624)
|.|++.|++.+.
T Consensus 34 L~e~~kE~~~L~ 45 (230)
T PF10146_consen 34 LEEYRKEMEELL 45 (230)
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 181
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=29.76 E-value=27 Score=33.36 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=15.1
Q ss_pred CcEEEEecccceeecCcc
Q 006951 148 ISAIGYDMDYTLMHYNVM 165 (624)
Q Consensus 148 I~~iGFDmDYTLa~Y~~~ 165 (624)
|+++-||+|+||..-+..
T Consensus 1 i~~i~fDktGTLt~~~~~ 18 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMS 18 (215)
T ss_dssp ESEEEEECCTTTBESHHE
T ss_pred CeEEEEecCCCcccCeEE
Confidence 689999999999876644
No 182
>PRK06769 hypothetical protein; Validated
Probab=29.73 E-value=39 Score=32.65 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=27.4
Q ss_pred cCCCcEEEEecccceeecCccch-HHH-HHHH---HHHHHhhcCCCCCCC
Q 006951 145 LRSISAIGYDMDYTLMHYNVMAW-EGR-AYDY---CMVNLRNMGFPVEGL 189 (624)
Q Consensus 145 L~~I~~iGFDmDYTLa~Y~~~~~-e~L-~y~~---~~~~Lv~~gYP~~~L 189 (624)
|..|+++=||.|+||..+..-.+ ..+ .|.- +++.|.+.||+.-.+
T Consensus 1 ~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~ 50 (173)
T PRK06769 1 MTNIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSF 50 (173)
T ss_pred CCCCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEE
Confidence 46799999999999976632101 011 2333 345566778885433
No 183
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=29.64 E-value=43 Score=33.85 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=0.0
Q ss_pred EEEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 150 AIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 150 ~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
.+-||||+||..-+.. +..-..+ ++++|.+.|++
T Consensus 1 li~~DlDGTLl~~~~~-i~~~~~~-~i~~l~~~G~~ 34 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHT-ISPSTKE-ALAKLREKGIK 34 (256)
T ss_pred CEEEeCCCCCCCCCCc-cCHHHHH-HHHHHHHCCCe
No 184
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=29.59 E-value=20 Score=33.59 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.5
Q ss_pred EEEEecccceeecCcc
Q 006951 150 AIGYDMDYTLMHYNVM 165 (624)
Q Consensus 150 ~iGFDmDYTLa~Y~~~ 165 (624)
++-||||+||+...+.
T Consensus 1 ~vlFDlDgtLv~~~~~ 16 (183)
T TIGR01509 1 AILFDLDGVLVDTSSA 16 (183)
T ss_pred CeeeccCCceechHHH
Confidence 4679999999998764
No 185
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=29.55 E-value=3.4e+02 Score=29.79 Aligned_cols=77 Identities=26% Similarity=0.260 Sum_probs=38.4
Q ss_pred hHhhHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhhhccccCh-------HHHHHHHH
Q 006951 457 CRELEEEYN----ALINSRGQRARLVELINQKEVVGDLFNQLRLSLQRRNRGHPAQTLAATNMDD-------QELTESMQ 525 (624)
Q Consensus 457 VpELe~Ei~----v~~~~~~~~~~L~~L~~~~~~l~d~~~~l~~~lq~~~~~~~~~~~~~~~~~~-------~e~~~~~~ 525 (624)
|.|||.-|- +-+--++|++++.+|..++..|+..+.+..... .+-+-..+.+|.|. ..+.++..
T Consensus 44 i~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELARaKV~a-----NRVA~vvANEWKD~nDkvMPVKqWLEERR 118 (351)
T PF07058_consen 44 IRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELARAKVSA-----NRVATVVANEWKDENDKVMPVKQWLEERR 118 (351)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hhhhhhhcccccccCCccccHHHHHHHHH
Confidence 566665542 222346788888888766655655444433211 12222334445442 33444445
Q ss_pred HHHHHHHHHHhhh
Q 006951 526 KLLVVMQRLDQKI 538 (624)
Q Consensus 526 ~l~~~~~~ld~~~ 538 (624)
-|+..||+|+.++
T Consensus 119 ~lQgEmQ~LrDKL 131 (351)
T PF07058_consen 119 FLQGEMQQLRDKL 131 (351)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554433
No 186
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=29.30 E-value=2.5e+02 Score=32.87 Aligned_cols=169 Identities=23% Similarity=0.275 Sum_probs=95.1
Q ss_pred cccccccccccCCccccccccC-------cccCCCCchHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCeeEecCccccCC
Q 006951 75 YDVDYLGESTKGDFNLNFDRLQ-------PVALDGPIEEVARMEAQEAEHLLNDFGIPSPSSARNSPRGIFCSRTLNLRS 147 (624)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~IF~Nr~L~L~~ 147 (624)
-.++-.||+|-|+.---++... ..-++.--++.....+||.+ +|+.|..|... .-..|-+.+ ++.
T Consensus 120 eki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~-ILr~l~HpNIi----kL~eivt~~---~~~ 191 (560)
T KOG0600|consen 120 EKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIK-ILRRLDHPNII----KLEEIVTSK---LSG 191 (560)
T ss_pred HHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHH-HHHhcCCCccc----ceeeEEEec---CCc
Confidence 4678899999998644333222 22333434555567788877 56667555432 233344433 111
Q ss_pred CcEEEEe-ccccee--------ecCccchHHHHHHHHHHHHhhcCCCCCCCCCCccccccc-eEeecCCCcEEeecCCCc
Q 006951 148 ISAIGYD-MDYTLM--------HYNVMAWEGRAYDYCMVNLRNMGFPVEGLAFDPDLVIRG-LVIDKEKGNLVKADRFGY 217 (624)
Q Consensus 148 I~~iGFD-mDYTLa--------~Y~~~~~e~L~y~~~~~~Lv~~gYP~~~L~yDp~F~iRG-Lv~D~~~GnLLKvD~~G~ 217 (624)
==+.-|. |||-|+ +++.+..-.+-.++ | ++|+|= -.|| ||=|++-.||| ||..|.
T Consensus 192 siYlVFeYMdhDL~GLl~~p~vkft~~qIKc~mkQL----l-------~Gl~~c---H~~gvlHRDIK~SNiL-idn~G~ 256 (560)
T KOG0600|consen 192 SIYLVFEYMDHDLSGLLSSPGVKFTEPQIKCYMKQL----L-------EGLEYC---HSRGVLHRDIKGSNIL-IDNNGV 256 (560)
T ss_pred eEEEEEecccchhhhhhcCCCcccChHHHHHHHHHH----H-------HHHHHH---hhcCeeeccccccceE-EcCCCC
Confidence 1111222 677664 33333222222222 1 122221 1233 45699999999 899999
Q ss_pred EEEEeeccccCcHhHHHHHhcCeeccc--c------cccchhhhhhhhchhHHHHHHHH
Q 006951 218 VKRAMHGTTMLSNRAVSEMYGRELVDL--R------KESRWEFLNTLFSVSEAVAYMQM 268 (624)
Q Consensus 218 I~~a~HG~~~Ls~eEi~e~Yg~~~i~~--~------~~~r~~~l~tlFslpEa~L~a~l 268 (624)
++.|=.|+-.+=..+-...|=+..|-+ + -..+|..=.|+.|+- |++|.|
T Consensus 257 LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~G--CIl~El 313 (560)
T KOG0600|consen 257 LKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVG--CILAEL 313 (560)
T ss_pred EEeccccceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhh--HHHHHH
Confidence 999988988766666555677765542 1 145666667888776 877754
No 187
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=28.44 E-value=29 Score=36.00 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=11.9
Q ss_pred EEEEecccceeecC
Q 006951 150 AIGYDMDYTLMHYN 163 (624)
Q Consensus 150 ~iGFDmDYTLa~Y~ 163 (624)
+|+||+|+||+.=.
T Consensus 65 aViFDlDgTLlDSs 78 (237)
T TIGR01672 65 AVSFDIDDTVLFSS 78 (237)
T ss_pred EEEEeCCCccccCc
Confidence 89999999998543
No 188
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=27.92 E-value=1.6e+02 Score=29.11 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=17.5
Q ss_pred CCCeeEecCc-c-----------cc---CCCcEEEEecc
Q 006951 133 SPRGIFCSRT-L-----------NL---RSISAIGYDMD 156 (624)
Q Consensus 133 ~~~~IF~Nr~-L-----------~L---~~I~~iGFDmD 156 (624)
.+..|||+.. + .+ ++|.++|||-+
T Consensus 177 ~~~ai~~~~d~~a~g~~~~l~~~g~~ip~di~v~g~d~~ 215 (268)
T cd06270 177 PFTAVFCANDEMAAGAISALREHGISVPQDVSIIGFDDV 215 (268)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHcCCCCCCceeEEEecCc
Confidence 4678999864 1 22 58999999964
No 189
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=27.70 E-value=42 Score=32.49 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=0.0
Q ss_pred EEEecccceeecCccchHHHHHHHHHHHHhhcCCC
Q 006951 151 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFP 185 (624)
Q Consensus 151 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP 185 (624)
|-||+|+||+.-+.. -.=.-..+++.|.+.|++
T Consensus 1 i~~DlDGTLl~~~~~--i~~~~~~al~~l~~~g~~ 33 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK--ISPETIEALKELQEKGIK 33 (254)
T ss_dssp EEEECCTTTCSTTSS--SCHHHHHHHHHHHHTTCE
T ss_pred cEEEECCceecCCCe--eCHHHHHHHHhhcccceE
No 190
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=27.58 E-value=52 Score=31.64 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=13.2
Q ss_pred CCcEEEEecccceeecCc
Q 006951 147 SISAIGYDMDYTLMHYNV 164 (624)
Q Consensus 147 ~I~~iGFDmDYTLa~Y~~ 164 (624)
-++++-||+|+|| ..+.
T Consensus 2 ~~~~~~~d~~~t~-~~~~ 18 (181)
T PRK08942 2 SMKAIFLDRDGVI-NVDS 18 (181)
T ss_pred CccEEEEECCCCc-ccCC
Confidence 4688999999998 4444
No 191
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.50 E-value=3.5e+02 Score=28.24 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 006951 472 GQRARLVELINQK 484 (624)
Q Consensus 472 ~~~~~L~~L~~~~ 484 (624)
+++++...|+.++
T Consensus 36 e~~kE~~~L~~Er 48 (230)
T PF10146_consen 36 EYRKEMEELLQER 48 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555443
No 192
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=26.75 E-value=30 Score=35.15 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=21.0
Q ss_pred HHHHHHhCCCCCcEEEEcCcccccccccccc
Q 006951 418 QMIENSLNIHGDEILYVGDHIYTDVSQSKVH 448 (624)
Q Consensus 418 ~~l~~llg~~G~~VLYfGDHIy~DIl~sKk~ 448 (624)
..+.+.++.....++||||. ..|+---+..
T Consensus 173 ~~~~~~~~~~~~~~i~iGD~-~~D~~~~~~~ 202 (244)
T TIGR00685 173 KRLLWHQPGSGISPVYLGDD-ITDEDAFRVV 202 (244)
T ss_pred HHHHHhcccCCCceEEEcCC-CcHHHHHHHH
Confidence 45666677777899999995 4576655543
No 193
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=26.74 E-value=28 Score=32.81 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=11.7
Q ss_pred EEEEecccceeecC
Q 006951 150 AIGYDMDYTLMHYN 163 (624)
Q Consensus 150 ~iGFDmDYTLa~Y~ 163 (624)
++-||+|+||+-..
T Consensus 1 ~viFD~DGTL~D~~ 14 (175)
T TIGR01493 1 AMVFDVYGTLVDVH 14 (175)
T ss_pred CeEEecCCcCcccH
Confidence 46799999999765
No 194
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=26.71 E-value=68 Score=30.97 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=22.4
Q ss_pred cEEEEecccceeecCc-----cchHHH-HHHHH---HHHHhhcCCCC
Q 006951 149 SAIGYDMDYTLMHYNV-----MAWEGR-AYDYC---MVNLRNMGFPV 186 (624)
Q Consensus 149 ~~iGFDmDYTLa~Y~~-----~~~e~L-~y~~~---~~~Lv~~gYP~ 186 (624)
+++.||.|+||..=++ ...+.+ .|..+ +++|.+.||+.
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l 48 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKF 48 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeE
Confidence 5789999999988222 212222 22333 44566678873
No 195
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.35 E-value=1.7e+02 Score=28.65 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=17.9
Q ss_pred CCCeeEecCc------------ccc---CCCcEEEEecc
Q 006951 133 SPRGIFCSRT------------LNL---RSISAIGYDMD 156 (624)
Q Consensus 133 ~~~~IF~Nr~------------L~L---~~I~~iGFDmD 156 (624)
.+..|||... ..+ ++|.++|||.+
T Consensus 178 ~~~~i~~~~~~~a~~~~~al~~~g~~~p~di~iig~d~~ 216 (268)
T cd06289 178 RPTAIVCFNDLVAFGAMSGLRRAGLTPGRDIAVVGFDDV 216 (268)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 4678998755 223 48999999986
No 196
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=25.92 E-value=43 Score=33.72 Aligned_cols=29 Identities=21% Similarity=-0.126 Sum_probs=15.6
Q ss_pred EecccceeecCccchHHHHHHHHHHHHhh
Q 006951 153 YDMDYTLMHYNVMAWEGRAYDYCMVNLRN 181 (624)
Q Consensus 153 FDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~ 181 (624)
||+|+||+-+.+..........+++.|..
T Consensus 2 lDyDGTL~p~~~~p~~~~~~~~~~~~L~~ 30 (235)
T PF02358_consen 2 LDYDGTLAPIVDDPDAAVPPPELRELLRA 30 (235)
T ss_dssp EE-TTTSS---S-GGG----HHHHHHHHH
T ss_pred cccCCccCCCCCCccccCCCHHHHHHHHH
Confidence 79999999999876777777777776653
No 197
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=25.87 E-value=1.3e+02 Score=36.16 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=30.4
Q ss_pred CccccCCCcEEEEecccceeecCccchHHHHHHHHHHHHhhcCCCC
Q 006951 141 RTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 186 (624)
Q Consensus 141 r~L~L~~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 186 (624)
+..+....++|-+|||+||..-+...... . ..+++.|.+.|.|.
T Consensus 409 ~~~~~~~~KLIfsDLDGTLLd~d~~i~~~-t-~eAL~~L~ekGI~~ 452 (694)
T PRK14502 409 LPSSGQFKKIVYTDLDGTLLNPLTYSYST-A-LDALRLLKDKELPL 452 (694)
T ss_pred CCCcCceeeEEEEECcCCCcCCCCccCHH-H-HHHHHHHHHcCCeE
Confidence 44566688999999999999854432332 2 23566777889883
No 198
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=25.79 E-value=62 Score=32.85 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=23.3
Q ss_pred HHHHHHHhCCC--CCcEEEEcCcccccccccc
Q 006951 417 AQMIENSLNIH--GDEILYVGDHIYTDVSQSK 446 (624)
Q Consensus 417 ~~~l~~llg~~--G~~VLYfGDHIy~DIl~sK 446 (624)
...+++.+|.. ..++++|||..= |+--.+
T Consensus 181 i~~l~~~~~i~~~~~~~~a~GD~~N-D~~Ml~ 211 (256)
T TIGR01486 181 ANALKQFYNQPGGAIKVVGLGDSPN-DLPLLE 211 (256)
T ss_pred HHHHHHHHhhcCCCceEEEEcCCHh-hHHHHH
Confidence 56788888888 889999999865 776554
No 199
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=25.59 E-value=52 Score=32.76 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=33.4
Q ss_pred CCCHHHHHHHhC----CCCCcEEEEcCcccccccccccccCceEEeehHhh
Q 006951 414 GGSAQMIENSLN----IHGDEILYVGDHIYTDVSQSKVHLRWRTALICREL 460 (624)
Q Consensus 414 gGn~~~l~~llg----~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVpEL 460 (624)
+|....++.+.| ...++|+.|||-+|.||+-.... |--++.+-|=.
T Consensus 121 ~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~m-Gs~gVw~~~gv 170 (190)
T KOG2961|consen 121 ACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRM-GSLGVWTEPGV 170 (190)
T ss_pred CccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhc-cceeEEecccc
Confidence 556667777777 45789999999999999988654 54455554433
No 200
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.75 E-value=1.2e+02 Score=34.56 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhcCCCCc----hhhhccccChHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccCCCCc
Q 006951 489 DLFNQLRLSLQRRNRGHPA----QTLAATNMDDQELTESMQKLLVVMQRLDQKIAPMLESDGELFNKRWGFLSRAGLWDK 564 (624)
Q Consensus 489 d~~~~l~~~lq~~~~~~~~----~~~~~~~~~~~e~~~~~~~l~~~~~~ld~~~~~~~~~~~~lFN~~fGslfRtg~~~~ 564 (624)
+++.+|++++++...+.+- |-+...-..++...+.|.++...++++..+.--..++++..|+-..--+|+++.|++
T Consensus 366 el~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhdd 445 (521)
T KOG1937|consen 366 ELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDD 445 (521)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCH
Confidence 4556666666654332210 111111122444555677777777777776666656666677666667888886543
No 201
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=24.45 E-value=1.8e+02 Score=25.31 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 006951 517 DQELTESMQKLLVVMQRLDQKIA 539 (624)
Q Consensus 517 ~~e~~~~~~~l~~~~~~ld~~~~ 539 (624)
.+++..+++.|...|..-..+|.
T Consensus 52 R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 52 RRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655444443
No 202
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.23 E-value=2.2e+02 Score=28.61 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=5.0
Q ss_pred CCCCCCccEE
Q 006951 383 FFQMSHPLYE 392 (624)
Q Consensus 383 FF~e~~pf~~ 392 (624)
||.+..-||.
T Consensus 4 ~f~e~~~~y~ 13 (188)
T PF03962_consen 4 IFHESKDFYT 13 (188)
T ss_pred HHhhcCCccc
Confidence 4555554443
No 203
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.12 E-value=1.6e+02 Score=29.04 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=34.6
Q ss_pred CCCeeEecCcc------------cc---CCCcEEEEeccc---------ceeecCccchHHHHHHHHHHHHhhcCCCCCC
Q 006951 133 SPRGIFCSRTL------------NL---RSISAIGYDMDY---------TLMHYNVMAWEGRAYDYCMVNLRNMGFPVEG 188 (624)
Q Consensus 133 ~~~~IF~Nr~L------------~L---~~I~~iGFDmDY---------TLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~~~ 188 (624)
.+..|||++.- .+ ++|.++|||..- |.+..++..+-..+++++.+.|.....|...
T Consensus 178 ~~~ai~~~~d~~a~~~~~~l~~~g~~~p~~i~v~~~d~~~~~~~~~~~~~~i~~~~~~~g~~a~~~l~~~l~~~~~~~~~ 257 (270)
T cd06296 178 RPTAIFAGNDLMALGVYEAARERGLRIPEDLSVVGFDDLPEARWVSPPLTTVRQPLREMGRAAVRLLLRLIEGEEPESRR 257 (270)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHhCCCCCCceEEEEECChhhhcccCCCceEecCCHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 46789998642 22 589999999652 2233333333334444444445322233222
Q ss_pred CCCCccccccc
Q 006951 189 LAFDPDLVIRG 199 (624)
Q Consensus 189 L~yDp~F~iRG 199 (624)
....|.+..|+
T Consensus 258 ~~i~~~li~r~ 268 (270)
T cd06296 258 VELATELVVRD 268 (270)
T ss_pred eEecceEEeeC
Confidence 23455555553
No 204
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=24.10 E-value=67 Score=28.86 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=27.4
Q ss_pred cccceeecCccchHHHHHHHHHHHHhhcCCCC
Q 006951 155 MDYTLMHYNVMAWEGRAYDYCMVNLRNMGFPV 186 (624)
Q Consensus 155 mDYTLa~Y~~~~~e~L~y~~~~~~Lv~~gYP~ 186 (624)
|=|||-.|+-.-+...+--...++|.+.|||.
T Consensus 24 mgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~ 55 (89)
T PF08444_consen 24 MGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPF 55 (89)
T ss_pred ccccCHhHhcCCHHHHHHHHHHHHHHHCCCCe
Confidence 67999999988887777777778999999994
No 205
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=23.94 E-value=65 Score=34.94 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=32.7
Q ss_pred CCCCCcEEEEcCcccccccccccccCceEEeehHhhHHHHHHH
Q 006951 425 NIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYNAL 467 (624)
Q Consensus 425 g~~G~~VLYfGDHIy~DIl~sKk~~gWRT~aIVpELe~Ei~v~ 467 (624)
+..-++.|.|||-+=+||+--+ .+|..|.+|.-=...|-.+.
T Consensus 238 ~i~psRt~mvGDRL~TDIlFG~-~~G~~TLLvltGv~~led~~ 279 (306)
T KOG2882|consen 238 NIDPSRTCMVGDRLDTDILFGK-NCGFKTLLVLSGVTTLEDIL 279 (306)
T ss_pred CCCcceEEEEcccchhhhhHhh-ccCcceEEEecCcCcHHHHH
Confidence 5556899999999999999876 47999999976555444443
No 206
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=23.70 E-value=67 Score=32.28 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=21.5
Q ss_pred CCCchHHHHHHHHhCCeEEEEeC
Q 006951 321 DPELPLALLDQKEAGKKLLLITN 343 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTN 343 (624)
.|...+.|.+|++.|-++.++||
T Consensus 33 ~~g~i~al~~l~~~gy~lVvvTN 55 (181)
T COG0241 33 IPGVIPALLKLQRAGYKLVVVTN 55 (181)
T ss_pred CccHHHHHHHHHhCCCeEEEEEC
Confidence 57888999999999999999999
No 207
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=23.69 E-value=30 Score=33.65 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=17.4
Q ss_pred EEEecccceeecCccchHHHHHHHHHHHHhh-cCCC
Q 006951 151 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRN-MGFP 185 (624)
Q Consensus 151 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~-~gYP 185 (624)
+-||||+||+--.. .+.+...+-+.+ .|+|
T Consensus 1 iiFDlDGTL~Ds~~-----~~~~~~~~~~~~~~~~~ 31 (205)
T TIGR01454 1 VVFDLDGVLVDSFA-----VMREAFAIAYREVVGDG 31 (205)
T ss_pred CeecCcCccccCHH-----HHHHHHHHHHHHhcCCC
Confidence 46999999986432 333333333444 3665
No 208
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=23.65 E-value=73 Score=32.87 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=36.8
Q ss_pred CCCeeEecCcc-c---------c----CCCcEEEEecccceeecCccch-------HHHHHHH---HHHHHhhcCCCCCC
Q 006951 133 SPRGIFCSRTL-N---------L----RSISAIGYDMDYTLMHYNVMAW-------EGRAYDY---CMVNLRNMGFPVEG 188 (624)
Q Consensus 133 ~~~~IF~Nr~L-~---------L----~~I~~iGFDmDYTLa~Y~~~~~-------e~L~y~~---~~~~Lv~~gYP~~~ 188 (624)
.+..|||.+.. . + ++|.++||| |.-++.|-.|.+ ++|+... +.+++.....+...
T Consensus 238 ~~~Ai~~~~D~~A~g~~~al~~~g~vP~dvsvigfd-~~~~~~~~~p~lTti~~~~~~~g~~a~~~l~~~i~~~~~~~~~ 316 (327)
T TIGR02417 238 LPQALFTTSYTLLEGVLDYMLERPLLDSQLHLATFG-DNYLLDFLPLPINSVAQQHRQLAWHALELALAAIDGKKPEPGQ 316 (327)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEEC-CchHHHccCCCceEEeCCHHHHHHHHHHHHHHHhcCCCCCCce
Confidence 36789998642 1 1 489999999 666776654433 4444433 33333221222222
Q ss_pred CCCCccccccc
Q 006951 189 LAFDPDLVIRG 199 (624)
Q Consensus 189 L~yDp~F~iRG 199 (624)
....|.+.+||
T Consensus 317 ~~i~~~li~r~ 327 (327)
T TIGR02417 317 RYIPRTLQIRH 327 (327)
T ss_pred EEeccEEEecC
Confidence 33567777776
No 209
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=23.58 E-value=2e+02 Score=30.78 Aligned_cols=65 Identities=29% Similarity=0.519 Sum_probs=38.8
Q ss_pred CCeeEecCcc------------cc---CCCcEEEEecccceeecCccch-------HHHHHHHHHHHHhh--cCCC--CC
Q 006951 134 PRGIFCSRTL------------NL---RSISAIGYDMDYTLMHYNVMAW-------EGRAYDYCMVNLRN--MGFP--VE 187 (624)
Q Consensus 134 ~~~IF~Nr~L------------~L---~~I~~iGFDmDYTLa~Y~~~~~-------e~L~y~~~~~~Lv~--~gYP--~~ 187 (624)
|..|||.+.. .+ ++|.++||| |--+++|..|.+ ++|+...+ +.|.+ .|-+ ..
T Consensus 238 ptAif~~nD~~Alg~l~~~~~~g~~vP~disviGfD-d~~~~~~~~P~LTTv~~~~~~~G~~A~-~~Ll~~i~~~~~~~~ 315 (333)
T COG1609 238 PTAIFCANDLMALGALRALRELGLRVPEDLSVIGFD-DIELARFLTPPLTTVRQPIEELGRRAA-ELLLERINGEPVPPR 315 (333)
T ss_pred CcEEEEcCcHHHHHHHHHHHHcCCCCCCeeEEEEec-ChhhhhhCCCCCeeecCCHHHHHHHHH-HHHHHHHcCCCCCCe
Confidence 8899998751 22 368999999 466777775544 44433332 23321 2333 23
Q ss_pred CCCCCccccccce
Q 006951 188 GLAFDPDLVIRGL 200 (624)
Q Consensus 188 ~L~yDp~F~iRGL 200 (624)
....++.+..|+-
T Consensus 316 ~~~l~~~li~R~S 328 (333)
T COG1609 316 RIVLPPELIVRES 328 (333)
T ss_pred eEEecceEEEecC
Confidence 4467888877763
No 210
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=23.56 E-value=96 Score=37.96 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=61.8
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCChHHHHHhhcccccccCCCCCCCCCCccEEEEccCCCCCCCCCCccEEEeCCCCcee
Q 006951 322 PELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFNMVIVSARKPEFFQMSHPLYEVVTGEGLMR 401 (624)
Q Consensus 322 p~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl~~~~l~~g~dWrdyFDvVIv~ArKP~FF~e~~pf~~v~~~~g~l~ 401 (624)
|+.+..+.+++++|.++.++|+-+-.-+..+..-+ | ..+.++.+|.+.. +...+. ..+.
T Consensus 531 ~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~-G--------i~~~~~~~v~g~~----------l~~~~~--~~l~ 589 (884)
T TIGR01522 531 PGVKEAVTTLITGGVRIIMITGDSQETAVSIARRL-G--------MPSKTSQSVSGEK----------LDAMDD--QQLS 589 (884)
T ss_pred hHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-C--------CCCCCCceeEhHH----------hHhCCH--HHHH
Confidence 57899999999999999999999999999998765 2 1122333443221 111110 0111
Q ss_pred ccccCCCCccccCCCHHH---HHHHhCCCCCcEEEEcCccc
Q 006951 402 PCFKARTGGLYSGGSAQM---IENSLNIHGDEILYVGDHIY 439 (624)
Q Consensus 402 ~~~~l~~G~VYsgGn~~~---l~~llg~~G~~VLYfGDHIy 439 (624)
. .+++..||+.=+..+ +-+.+...|..|+++||-+-
T Consensus 590 ~--~~~~~~Vfar~~P~~K~~iv~~lq~~g~~v~mvGDGvN 628 (884)
T TIGR01522 590 Q--IVPKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGVN 628 (884)
T ss_pred H--HhhcCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 1 134556887777664 44455667899999999764
No 211
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=23.22 E-value=52 Score=38.13 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=25.7
Q ss_pred CCCcEEEEecccceeecCc--------cchHHHHHHHHHHH---HhhcCCCC
Q 006951 146 RSISAIGYDMDYTLMHYNV--------MAWEGRAYDYCMVN---LRNMGFPV 186 (624)
Q Consensus 146 ~~I~~iGFDmDYTLa~Y~~--------~~~e~L~y~~~~~~---Lv~~gYP~ 186 (624)
...+++.||+|+||+.-++ ..|+ +.|..+.+. |.+.||+.
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~-~l~pgV~e~L~~L~~~Gy~I 216 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQ-IIFPEIPEKLKELEADGFKI 216 (526)
T ss_pred ccCcEEEEECCCCccccCCCccCCCCHHHee-ecccCHHHHHHHHHHCCCEE
Confidence 5679999999999997543 1222 234555444 45678873
No 212
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.05 E-value=6.4e+02 Score=23.79 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=17.1
Q ss_pred CceEEeehHhhHHHHHHHHhhH-HHHHHHHHHHHHHHH
Q 006951 450 RWRTALICRELEEEYNALINSR-GQRARLVELINQKEV 486 (624)
Q Consensus 450 gWRT~aIVpELe~Ei~v~~~~~-~~~~~L~~L~~~~~~ 486 (624)
+=-++.+|+-|..+|+-..... ..+.++..|..+++.
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~ 48 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDE 48 (120)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666665433211 134444444444433
No 213
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=22.75 E-value=69 Score=29.91 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=22.4
Q ss_pred cEEEEecccceeecCccch----HHH-HHHH---HHHHHhhcCCC
Q 006951 149 SAIGYDMDYTLMHYNVMAW----EGR-AYDY---CMVNLRNMGFP 185 (624)
Q Consensus 149 ~~iGFDmDYTLa~Y~~~~~----e~L-~y~~---~~~~Lv~~gYP 185 (624)
+++-||+|+||+.=++..+ ..+ .|+. +++.|.+.||+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~ 45 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYT 45 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCE
Confidence 4688999999998776322 111 2332 34455566776
No 214
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=22.29 E-value=1.1e+02 Score=32.24 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=39.4
Q ss_pred CCcEEEEecccceeecCccchHHHHHHHHHHHHh-hcCCCCCCC-----CC--CccccccceE
Q 006951 147 SISAIGYDMDYTLMHYNVMAWEGRAYDYCMVNLR-NMGFPVEGL-----AF--DPDLVIRGLV 201 (624)
Q Consensus 147 ~I~~iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv-~~gYP~~~L-----~y--Dp~F~iRGLv 201 (624)
+++|+=||+|-||-.=+.. +..+.=+-+.++++ +.|.|++.. .| .-.-.++||+
T Consensus 14 ~~~~l~FDiDdtLYp~St~-i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~aGL~ 75 (244)
T KOG3109|consen 14 NYKCLFFDIDDTLYPLSTG-IQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGLTMAGLK 75 (244)
T ss_pred cceEEEEecccccccCchh-HHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHHHHH
Confidence 7899999999999877654 66666666778887 589997642 22 3345678887
No 215
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=21.96 E-value=89 Score=30.12 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=27.8
Q ss_pred ccCCCcEEEEecccceeecCcc-chHHHHHHHHHHHHhhcCCCC
Q 006951 144 NLRSISAIGYDMDYTLMHYNVM-AWEGRAYDYCMVNLRNMGFPV 186 (624)
Q Consensus 144 ~L~~I~~iGFDmDYTLa~Y~~~-~~e~L~y~~~~~~Lv~~gYP~ 186 (624)
.-..++++-+|+|+||..++.. .+.. ...+++.|.+.|++.
T Consensus 21 ~~~~v~~vv~D~Dgtl~~~~~~~~~pg--v~e~L~~Lk~~g~~l 62 (170)
T TIGR01668 21 KKVGIKGVVLDKDNTLVYPDHNEAYPA--LRDWIEELKAAGRKL 62 (170)
T ss_pred HHCCCCEEEEecCCccccCCCCCcChh--HHHHHHHHHHcCCEE
Confidence 3468999999999999988752 2222 123455666777763
No 216
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=21.25 E-value=93 Score=32.92 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=28.5
Q ss_pred CCCchHHHHHHHHhCCeEEEEeCCChHHHHHhhccc
Q 006951 321 DPELPLALLDQKEAGKKLLLITNSDYHYTDKMMQHS 356 (624)
Q Consensus 321 dp~l~~~L~~lr~~GKKlFLiTNS~~~Ytn~vM~Yl 356 (624)
-|....+|..+++.|.++|++||.+-...+..+..+
T Consensus 120 ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L 155 (266)
T TIGR01533 120 VAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL 155 (266)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH
Confidence 467888999999999999999999866655554444
No 217
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=21.18 E-value=86 Score=30.37 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=0.0
Q ss_pred EEEecccceeecCccchHHHHHHHHHHHHhhcC
Q 006951 151 IGYDMDYTLMHYNVMAWEGRAYDYCMVNLRNMG 183 (624)
Q Consensus 151 iGFDmDYTLa~Y~~~~~e~L~y~~~~~~Lv~~g 183 (624)
+-||+|+||+.-+......-.. .++++|.+.|
T Consensus 2 i~~D~DgTL~~~~~~~~~~~~~-~~l~~l~~~g 33 (204)
T TIGR01484 2 LFFDLDGTLLDPNAHELSPETI-EALERLREAG 33 (204)
T ss_pred EEEeCcCCCcCCCCCcCCHHHH-HHHHHHHHCC
No 218
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=20.78 E-value=76 Score=28.77 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=11.6
Q ss_pred EEEecccceeecCc
Q 006951 151 IGYDMDYTLMHYNV 164 (624)
Q Consensus 151 iGFDmDYTLa~Y~~ 164 (624)
|-||+|+||+....
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 46999999997764
No 219
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=20.10 E-value=1.9e+02 Score=28.44 Aligned_cols=24 Identities=38% Similarity=0.773 Sum_probs=17.6
Q ss_pred CCCeeEecCc------------ccc---CCCcEEEEecc
Q 006951 133 SPRGIFCSRT------------LNL---RSISAIGYDMD 156 (624)
Q Consensus 133 ~~~~IF~Nr~------------L~L---~~I~~iGFDmD 156 (624)
.+..|||++. ..+ ++|.++|||..
T Consensus 178 ~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vvg~d~~ 216 (269)
T cd06275 178 RPTAVFCGNDLMAMGALCAAQEAGLRVPQDLSIIGYDDI 216 (269)
T ss_pred CCcEEEECChHHHHHHHHHHHHcCCCCCcceEEEEeCCh
Confidence 4678999864 233 48899999964
No 220
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=20.09 E-value=95 Score=32.24 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.0
Q ss_pred CCchHHHHHHHHhCCeEEEEeCCC
Q 006951 322 PELPLALLDQKEAGKKLLLITNSD 345 (624)
Q Consensus 322 p~l~~~L~~lr~~GKKlFLiTNS~ 345 (624)
|....+|.+|+++|+++.++||..
T Consensus 21 ~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 21 PGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCC
Confidence 558889999999999999999844
Done!