Query 006953
Match_columns 624
No_of_seqs 346 out of 1569
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 16:51:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 7.9E-45 1.7E-49 382.7 23.5 275 70-347 6-285 (317)
2 KOG1470 Phosphatidylinositol t 100.0 2.3E-38 5.1E-43 328.2 19.9 227 86-338 27-253 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 1.1E-29 2.3E-34 239.5 9.7 157 155-321 2-159 (159)
4 smart00516 SEC14 Domain in hom 99.9 2.4E-27 5.2E-32 223.3 15.1 154 156-323 5-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 3.3E-24 7.1E-29 199.0 15.1 145 164-321 13-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.4 1.4E-13 3.1E-18 129.6 3.1 139 164-325 6-147 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.6 4.6E-08 1E-12 77.3 5.2 47 85-132 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 98.2 7.2E-06 1.6E-10 88.0 10.1 127 167-314 89-215 (467)
9 COG4064 MtrG Tetrahydromethano 83.2 1.3 2.9E-05 36.7 3.2 25 536-560 11-35 (75)
10 PRK01026 tetrahydromethanopter 80.9 1.8 4E-05 36.7 3.3 25 536-560 11-35 (77)
11 TIGR01149 mtrG N5-methyltetrah 80.5 1.9 4.2E-05 35.8 3.2 25 536-560 8-32 (70)
12 PF04210 MtrG: Tetrahydrometha 74.6 3 6.5E-05 34.7 2.8 25 536-560 8-32 (70)
13 PF10805 DUF2730: Protein of u 65.6 65 0.0014 29.0 9.7 17 478-494 9-25 (106)
14 PF14555 UBA_4: UBA-like domai 60.1 28 0.00061 25.9 5.4 36 86-130 2-37 (43)
15 PF02845 CUE: CUE domain; Int 48.7 56 0.0012 24.1 5.3 38 86-131 3-40 (42)
16 KOG1962 B-cell receptor-associ 47.2 90 0.0019 31.9 8.1 73 540-612 114-191 (216)
17 PHA01750 hypothetical protein 43.4 1.2E+02 0.0025 25.3 6.6 42 572-615 30-71 (75)
18 TIGR02132 phaR_Bmeg polyhydrox 42.8 88 0.0019 30.9 7.0 74 538-612 70-154 (189)
19 KOG0612 Rho-associated, coiled 42.4 85 0.0018 39.4 8.2 47 542-596 443-492 (1317)
20 TIGR03752 conj_TIGR03752 integ 41.7 1.5E+02 0.0033 33.7 9.5 73 537-609 56-135 (472)
21 TIGR03185 DNA_S_dndD DNA sulfu 40.5 1.2E+02 0.0026 35.8 9.2 64 540-605 391-454 (650)
22 smart00546 CUE Domain that may 39.5 78 0.0017 23.4 4.9 38 86-131 4-41 (43)
23 PF10368 YkyA: Putative cell-w 36.9 1.4E+02 0.0031 30.1 7.8 78 539-616 31-112 (204)
24 PF05377 FlaC_arch: Flagella a 36.8 98 0.0021 24.9 5.2 34 580-613 1-34 (55)
25 KOG1838 Alpha/beta hydrolase [ 36.7 2.1E+02 0.0046 32.0 9.6 89 168-281 121-215 (409)
26 PRK00117 recX recombination re 36.6 42 0.00092 31.8 3.9 99 27-132 53-153 (157)
27 PF08317 Spc7: Spc7 kinetochor 35.7 2E+02 0.0043 30.9 9.3 75 541-615 178-252 (325)
28 COG1340 Uncharacterized archae 34.8 3E+02 0.0064 29.5 10.0 65 542-615 109-173 (294)
29 PRK09039 hypothetical protein; 33.6 3.5E+02 0.0075 29.5 10.7 19 481-499 29-47 (343)
30 PF01496 V_ATPase_I: V-type AT 33.1 1.7E+02 0.0037 35.2 9.0 64 550-613 204-271 (759)
31 KOG3313 Molecular chaperone Pr 32.4 2.1E+02 0.0045 28.4 7.7 62 554-615 22-86 (187)
32 PF12718 Tropomyosin_1: Tropom 32.0 1.9E+02 0.004 27.5 7.3 69 539-607 34-108 (143)
33 PF10212 TTKRSYEDQ: Predicted 31.7 2.5E+02 0.0053 32.4 9.3 35 571-605 461-509 (518)
34 PF13080 DUF3926: Protein of u 31.3 42 0.0009 25.3 2.1 22 589-613 13-34 (44)
35 PF11221 Med21: Subunit 21 of 30.7 4.1E+02 0.0089 25.1 9.5 61 545-613 78-138 (144)
36 KOG0249 LAR-interacting protei 29.8 3.1E+02 0.0067 32.9 9.7 75 538-612 171-249 (916)
37 PRK14137 recX recombination re 29.3 1.1E+02 0.0024 30.6 5.6 27 109-135 156-182 (195)
38 PF14712 Snapin_Pallidin: Snap 29.0 1.3E+02 0.0029 25.8 5.4 31 583-613 11-41 (92)
39 PF05276 SH3BP5: SH3 domain-bi 27.4 4.2E+02 0.0092 27.5 9.5 52 547-600 98-149 (239)
40 COG2137 OraA Uncharacterized p 27.3 1.5E+02 0.0032 29.3 5.9 35 98-132 130-164 (174)
41 PF13234 rRNA_proc-arch: rRNA- 27.0 2.2E+02 0.0048 29.5 7.6 70 542-614 182-263 (268)
42 PHA00687 hypothetical protein 26.8 1.4E+02 0.003 23.0 4.3 30 564-593 9-48 (56)
43 PF11802 CENP-K: Centromere-as 26.7 4.2E+02 0.009 28.0 9.3 38 540-577 52-89 (268)
44 TIGR00034 aroFGH phospho-2-deh 26.2 1.3E+02 0.0028 32.9 5.7 68 159-237 199-266 (344)
45 PF03961 DUF342: Protein of un 25.9 3.1E+02 0.0068 30.8 9.1 55 541-595 342-398 (451)
46 PF04740 LXG: LXG domain of WX 25.7 2.9E+02 0.0063 27.1 7.9 113 469-601 47-160 (204)
47 PRK09261 phospho-2-dehydro-3-d 25.6 3.7E+02 0.008 29.5 9.1 67 159-236 204-271 (349)
48 PRK14136 recX recombination re 25.6 86 0.0019 33.7 4.2 24 108-131 278-301 (309)
49 TIGR02132 phaR_Bmeg polyhydrox 25.3 2.2E+02 0.0047 28.3 6.5 12 590-601 142-153 (189)
50 PF10158 LOH1CR12: Tumour supp 24.9 2.4E+02 0.0053 26.5 6.7 63 543-606 52-114 (131)
51 PLN03214 probable enoyl-CoA hy 24.8 2.3E+02 0.0049 29.7 7.3 21 598-618 250-270 (278)
52 PRK10884 SH3 domain-containing 24.8 5.3E+02 0.011 26.1 9.5 73 544-616 97-169 (206)
53 PHA02562 46 endonuclease subun 24.4 2.1E+02 0.0046 32.6 7.5 74 539-613 298-371 (562)
54 PF04880 NUDE_C: NUDE protein, 24.3 95 0.0021 30.4 3.9 32 569-601 4-35 (166)
55 PRK12822 phospho-2-dehydro-3-d 24.2 2.4E+02 0.0051 31.0 7.2 68 159-237 204-271 (356)
56 PF05276 SH3BP5: SH3 domain-bi 23.9 4.1E+02 0.0088 27.6 8.6 74 542-615 144-227 (239)
57 PF15294 Leu_zip: Leucine zipp 23.4 2.1E+02 0.0046 30.4 6.5 61 547-618 190-250 (278)
58 PF05529 Bap31: B-cell recepto 23.3 2.3E+02 0.0051 27.8 6.6 62 541-603 119-184 (192)
59 PRK06569 F0F1 ATP synthase sub 23.1 77 0.0017 30.7 3.0 95 474-590 10-106 (155)
60 PF01102 Glycophorin_A: Glycop 22.7 1.1E+02 0.0024 28.5 3.9 32 472-503 64-95 (122)
61 PF05335 DUF745: Protein of un 22.2 1.4E+02 0.0031 29.8 4.8 31 568-598 140-177 (188)
62 PF15175 SPATA24: Spermatogene 21.7 2.3E+02 0.0051 27.2 5.8 58 539-600 2-59 (153)
63 PRK12756 phospho-2-dehydro-3-d 21.4 2.8E+02 0.0061 30.4 7.1 68 159-237 203-270 (348)
64 COG1842 PspA Phage shock prote 21.0 8.9E+02 0.019 24.8 10.4 50 540-595 59-108 (225)
65 PF14282 FlxA: FlxA-like prote 20.7 4E+02 0.0088 23.9 7.0 51 538-589 17-68 (106)
66 PF12297 EVC2_like: Ellis van 20.7 4.4E+02 0.0095 29.6 8.5 21 474-494 68-88 (429)
67 PF09789 DUF2353: Uncharacteri 20.7 3.9E+02 0.0085 29.0 8.0 62 537-598 23-98 (319)
68 smart00787 Spc7 Spc7 kinetocho 20.5 5.2E+02 0.011 27.9 9.0 74 541-614 173-260 (312)
69 PF11068 YlqD: YlqD protein; 20.3 5E+02 0.011 24.4 7.7 50 567-616 15-72 (131)
70 PF15027 DUF4525: Domain of un 20.1 98 0.0021 29.0 2.9 23 538-560 84-106 (138)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=7.9e-45 Score=382.65 Aligned_cols=275 Identities=45% Similarity=0.761 Sum_probs=247.0
Q ss_pred ccccccccCCCC--HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccc
Q 006953 70 RVSSVSIEDVRD--VEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMED 147 (624)
Q Consensus 70 ~v~s~~ied~~d--~eE~~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~~~d~i~~d 147 (624)
.++.+..+++.+ +.+.+.++++| |+..+++++...+|+++||||||||+||+++|+++|.+++.||++++.+.|..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~ 84 (317)
T KOG1471|consen 6 MLAKVAKEELNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED 84 (317)
T ss_pred ccccccccccCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc
Confidence 444444544443 56677788888 898999999755666799999999999999999999999999999999999876
Q ss_pred cchHHHHHHHhccCcccccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeE
Q 006953 148 FEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSST 227 (624)
Q Consensus 148 ~~~~el~~vlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~t 227 (624)
.....++.+++|++++|+|++|+||++.+.|..+...++..+...++.++++..+|+.+..+++.|....+++++|++
T Consensus 85 --~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~ 162 (317)
T KOG1471|consen 85 --FEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIV 162 (317)
T ss_pred --cccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeE
Confidence 233444566899999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHHhcccCccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHh
Q 006953 228 SILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLE 307 (624)
Q Consensus 228 iIiDl~G~sl~~~~~~~~~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lwkiVKpFLdpkT~~KI~~lg~~~~~~L~e 307 (624)
+|+|++|+++.++....+..++.++.++|+||||+++++||||+|++|.++|++|+|||+++|++||++++.++.+.|++
T Consensus 163 ~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k 242 (317)
T KOG1471|consen 163 TIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLK 242 (317)
T ss_pred EEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999777778899999
Q ss_pred hcCCCCCccccCCCcCCC---CCCCCccCCCCCCCCHHHHHHh
Q 006953 308 IIDARELPEFLGGTCNCA---DQGGCLRSDKGPWQNPEILKMV 347 (624)
Q Consensus 308 ~Id~~~LP~eyGGt~~~~---~~ggcl~~~~gpW~~p~~~k~~ 347 (624)
+|++++||++|||+|.+. ..++|..++.++|.++.+.+..
T Consensus 243 ~i~~~~LP~~yGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (317)
T KOG1471|consen 243 YIPPEVLPEEYGGTCGDLDDPNGGGCDLSDEGPWKEPEIKKGK 285 (317)
T ss_pred hCCHhhCccccCCCccccccccCCcCccccccccccccccccc
Confidence 999999999999999996 3577999999999888776643
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-38 Score=328.19 Aligned_cols=227 Identities=29% Similarity=0.445 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHHhccCcccc
Q 006953 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYH 165 (624)
Q Consensus 86 ~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~~~d~i~~d~~~~el~~vlk~~p~~~~ 165 (624)
+.+...+..+.....--...+.+.+++|||||||||+++|.+|+.++|.||+.+++...+ ...|+..-+..+.+++.
T Consensus 27 ~k~~~~~~~~~pl~~~~~~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~---~~~Ev~~e~~tGK~yi~ 103 (324)
T KOG1470|consen 27 DKINSVKKLLGPLTEKESKWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVI---EADEVAAELETGKAYIL 103 (324)
T ss_pred HHHHHHHHhhcchhhhhHhcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCcccc---CHHHHHHHhhcCcEEEe
Confidence 455566655521111111223336999999999999999999999999999999987722 34557667788999999
Q ss_pred cCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCCChHHH
Q 006953 166 GVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNAR 245 (624)
Q Consensus 166 G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl~G~sl~~~~~~~~ 245 (624)
|.|++||||+|+++....++. .+.+++.+++|++||.++..+. .+++++++++|++|+|++|.+ +
T Consensus 104 G~D~~gRPVl~~~~~~~~qn~----~t~~~~~r~~Vy~mE~Ai~~lp--------~~qe~~~~L~D~~~fs~sN~d---~ 168 (324)
T KOG1470|consen 104 GHDKDGRPVLYLRPRPHRQNT----KTQKELERLLVYTLENAILFLP--------PGQEQFVWLFDLTGFSMSNPD---I 168 (324)
T ss_pred cccCCCCeEEEEecCCCCCCC----CCHHHHHHHHHHHHHHHHHhCC--------CCcceEEEEEecccCcccCCC---c
Confidence 999999999999666555443 5899999999999999998754 457889999999999999888 8
Q ss_pred HHHHHHHHHhcccCccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHhhcCCCCCccccCCCcCCC
Q 006953 246 ELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCA 325 (624)
Q Consensus 246 ~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lwkiVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~~~LP~eyGGt~~~~ 325 (624)
...+.+++++|+||||||+..+|+|+||+|..+|++++|||||+|++||.|..+. ..|.+|||+++||..|||+..+.
T Consensus 169 ~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~--~~l~~~~d~~~l~s~~GG~~~~~ 246 (324)
T KOG1470|consen 169 KFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK--DDLSEYFDESQLPSLFGGKLLFE 246 (324)
T ss_pred HHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh--hHHHhhCCccccchhhCCCcccc
Confidence 8999999999999999999999999999999999999999999999999999764 55999999999999999988886
Q ss_pred CCCCCccCCCCCC
Q 006953 326 DQGGCLRSDKGPW 338 (624)
Q Consensus 326 ~~ggcl~~~~gpW 338 (624)
+ .++.+|
T Consensus 247 y------~~e~~~ 253 (324)
T KOG1470|consen 247 Y------THEEYW 253 (324)
T ss_pred c------CCcchh
Confidence 6 566688
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.96 E-value=1.1e-29 Score=239.54 Aligned_cols=157 Identities=37% Similarity=0.585 Sum_probs=130.6
Q ss_pred HHHhccCcccccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCC
Q 006953 155 EVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQG 234 (624)
Q Consensus 155 ~vlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl~G 234 (624)
++.+.++++++|+|++||||+|++++++|+.. .+.+++++++++.+|.+++...+ ..+++++++|+|++|
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~~~------~~~~~~~~~iiD~~g 71 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKK----FSPEDVIRFFVYLLERMLKRMPE------GGQVEGIVVIIDLSG 71 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHT----S-HHHHHHHHHHHHHHHHHTHHH------TSHHH-EEEEEE-TT
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCc----CCHHHHHHHHHHHHHHHHhhhcc------cccceeEEEEEeCCC
Confidence 35788999999999999999999999999985 56889999999999999865221 356789999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhcccCccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCC-CchhHHHhhcCCCC
Q 006953 235 VGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGN-KYQSKLLEIIDARE 313 (624)
Q Consensus 235 ~sl~~~~~~~~~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lwkiVKpFLdpkT~~KI~~lg~-~~~~~L~e~Id~~~ 313 (624)
++++++.....++++.++++++++||++++++||||+|++|+++|+++++||+++|++||+++++ ++.+.|.++||+++
T Consensus 72 ~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~ 151 (159)
T PF00650_consen 72 FSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQ 151 (159)
T ss_dssp --HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGG
T ss_pred ceEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhH
Confidence 99998875558999999999999999999999999999999999999999999999999999965 45578999999999
Q ss_pred CccccCCC
Q 006953 314 LPEFLGGT 321 (624)
Q Consensus 314 LP~eyGGt 321 (624)
||++|||+
T Consensus 152 lP~~~GG~ 159 (159)
T PF00650_consen 152 LPVEYGGT 159 (159)
T ss_dssp SBGGGTSS
T ss_pred CchhcCCC
Confidence 99999996
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=2.4e-27 Score=223.30 Aligned_cols=154 Identities=40% Similarity=0.651 Sum_probs=139.4
Q ss_pred HHhccCcccccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCC
Q 006953 156 VLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGV 235 (624)
Q Consensus 156 vlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl~G~ 235 (624)
...+.++++ |.|++||||+|++++++++.. .+.+++++++++.+|.++... ....++.++++|+|++|+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~----~~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~~~i~D~~~~ 73 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKS----VTLEELLRYLVYVLEKILQRE------KKTGGIEGFTVIFDLKGL 73 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccCc----CCHHHHHHHHHHHHHHHHHHH------hcCCCeeeEEEEEECCCC
Confidence 455677777 999999999999999998765 689999999999999988641 134568999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhcccCccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHhhcCCCCCc
Q 006953 236 GLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELP 315 (624)
Q Consensus 236 sl~~~~~~~~~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lwkiVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~~~LP 315 (624)
++++++ .++++.++.+++++||++++++||||+|++++++|+++++|+++++++||+++++++.+.|.++||+++||
T Consensus 74 ~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP 150 (158)
T smart00516 74 SMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLP 150 (158)
T ss_pred Cccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCc
Confidence 999866 78999999999999999999999999999999999999999999999999999987778999999999999
Q ss_pred cccCCCcC
Q 006953 316 EFLGGTCN 323 (624)
Q Consensus 316 ~eyGGt~~ 323 (624)
.+|||+|.
T Consensus 151 ~~~GG~~~ 158 (158)
T smart00516 151 EELGGTLD 158 (158)
T ss_pred HhhCCCCC
Confidence 99999974
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.92 E-value=3.3e-24 Score=199.03 Aligned_cols=145 Identities=39% Similarity=0.619 Sum_probs=128.9
Q ss_pred cccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCCChH
Q 006953 164 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKN 243 (624)
Q Consensus 164 ~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl~G~sl~~~~~~ 243 (624)
..|.|++||||+++++++.++... ...+++++++++.+|.++..... ...++++|+|++|+++.++. .
T Consensus 13 ~~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~~--------~~~~~~~i~D~~~~~~~~~~-~ 80 (157)
T cd00170 13 LGGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQEDDE--------QVEGFVVIIDLKGLSLSHLL-P 80 (157)
T ss_pred cCCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhhhh--------cccceEEEEECCCCChhccc-h
Confidence 345799999999999997666543 23489999999999999875322 23699999999999999986 6
Q ss_pred HHHHHHHHHHHhcccCccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHhhcCCCCCccccCCC
Q 006953 244 ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321 (624)
Q Consensus 244 ~~~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lwkiVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~~~LP~eyGGt 321 (624)
..+.++.++++++++||++++++||||+|++|+.+|+++++|+++++++||++++++ .+.|.++||+++||.+|||+
T Consensus 81 ~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 81 DPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred hHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 689999999999999999999999999999999999999999999999999999876 68999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.39 E-value=1.4e-13 Score=129.60 Aligned_cols=139 Identities=21% Similarity=0.348 Sum_probs=94.5
Q ss_pred cccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHH-HHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCCCh
Q 006953 164 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGF-EKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSK 242 (624)
Q Consensus 164 ~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~l-E~~l~~~~pacs~~~~~~i~~~tiIiDl~G~sl~~~~~ 242 (624)
..|+|++||||+++...++ +.. .+.+.++.|++..+ +.+ ...++++|+|+.|++..+.
T Consensus 6 ~gG~d~~g~pV~~~~~~~~-~~~----~~~~~ll~yl~~~l~~~~--------------~~~~f~vVid~~~~~~~~~-- 64 (149)
T PF13716_consen 6 PGGRDREGRPVVVFIASRL-PSS----DDLERLLLYLLSTLSEEV--------------VDKPFSVVIDHTGFSRSSE-- 64 (149)
T ss_dssp EEEEBTTS-EEEEEEGGG--C-T----THHHHHHHHHHHHH-TTT--------------TTS-EEEEEE-TT--GGG---
T ss_pred ecccCCCcCEEEEEECCcC-cch----hhHHHHHHHHHHhhhHHh--------------cCCCEEEEEEcCCCccccC--
Confidence 4589999999999997777 432 35666777766555 221 1246999999999987543
Q ss_pred HHHHHHHHHHHHhcccCccccceEEEEecChHHHHHH-HHHHhcCChhh-hccEEEeCCCchhHHHhhcCCCCCccccCC
Q 006953 243 NARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKT-TSKIHVLGNKYQSKLLEIIDARELPEFLGG 320 (624)
Q Consensus 243 ~~~~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lw-kiVKpFLdpkT-~~KI~~lg~~~~~~L~e~Id~~~LP~eyGG 320 (624)
+....++.+...+...|+..|+++||||++++++.++ .+.+++++.+. ..||.++.+ .++|.++||+++||+.+||
T Consensus 65 ~~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~ 142 (149)
T PF13716_consen 65 PSLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPG 142 (149)
T ss_dssp --HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------H
T ss_pred CchHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCC
Confidence 2367899999999999999999999999999999999 55567778888 899999965 5899999999999999999
Q ss_pred CcCCC
Q 006953 321 TCNCA 325 (624)
Q Consensus 321 t~~~~ 325 (624)
+...+
T Consensus 143 ~~~~d 147 (149)
T PF13716_consen 143 VLQYD 147 (149)
T ss_dssp HH---
T ss_pred EEecC
Confidence 87653
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.63 E-value=4.6e-08 Score=77.33 Aligned_cols=47 Identities=40% Similarity=0.591 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006953 85 LQAVDAFRQSLIMD--------ELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (624)
Q Consensus 85 ~~aV~efR~~L~~~--------~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (624)
++++++|++.|... +.....++| .+||||||||+||+++|.+||.+|
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDD-NFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SH-HHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCH-HHHHHHHHHccCCHHHHHHHHHhC
Confidence 47899999999873 344556677 699999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.19 E-value=7.2e-06 Score=88.03 Aligned_cols=127 Identities=22% Similarity=0.287 Sum_probs=101.2
Q ss_pred CCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCCChHHHH
Q 006953 167 VDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARE 246 (624)
Q Consensus 167 ~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl~G~sl~~~~~~~~~ 246 (624)
.|++||+|+++-..++.+..- ..-.++++|.++.++..++. .+++++=-.|+...+.. .++
T Consensus 89 ~D~~gr~iivv~a~rlp~~~e---ld~~~li~~~v~~id~~Ve~--------------DYt~vYfh~gl~s~nkp--~l~ 149 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSE---LDDIRLISYLVYTIDKYVEN--------------DYTLVYFHHGLPSDNKP--YLQ 149 (467)
T ss_pred ccccCCeeEEEEEecCCchhh---hhhHHHHHHHHHHHHHHHhc--------------cceeeehhcCCcccccc--hHH
Confidence 699999999998888776541 12224899999999998864 25666656666655443 466
Q ss_pred HHHHHHHHhcccCccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHhhcCCCCC
Q 006953 247 LILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (624)
Q Consensus 247 llk~i~~ilq~~YPErL~rI~IINaP~~f~~lwkiVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~~~L 314 (624)
++....+=+-.+|--.++.+|+|.+-|+.+++|+++|||++.|...||+.+ ++.++|.++|.-++|
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~--n~lseL~~~l~l~rL 215 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYF--NSLSELFEALKLNRL 215 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEe--ehHHHHHHhhhhhhh
Confidence 666666666678999999999999999999999999999999999999998 567999999885554
No 9
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=83.21 E-value=1.3 Score=36.67 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006953 536 LTEVDLLSSVTKRLSELEEKVDTLQ 560 (624)
Q Consensus 536 ~~~~~~~~~~~~r~~~lEekv~~L~ 560 (624)
++++|++..+.+||.++|+||+.-.
T Consensus 11 ~v~~~dfne~~kRLdeieekvef~~ 35 (75)
T COG4064 11 VVDPDDFNEIHKRLDEIEEKVEFVN 35 (75)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhhH
Confidence 5889999999999999999998643
No 10
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=80.89 E-value=1.8 Score=36.66 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006953 536 LTEVDLLSSVTKRLSELEEKVDTLQ 560 (624)
Q Consensus 536 ~~~~~~~~~~~~r~~~lEekv~~L~ 560 (624)
+++.+++..+++||.++||||+.-+
T Consensus 11 iv~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 11 VVDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999998643
No 11
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=80.46 E-value=1.9 Score=35.77 Aligned_cols=25 Identities=44% Similarity=0.630 Sum_probs=22.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006953 536 LTEVDLLSSVTKRLSELEEKVDTLQ 560 (624)
Q Consensus 536 ~~~~~~~~~~~~r~~~lEekv~~L~ 560 (624)
+++.+++..+++||.++|+||+.-+
T Consensus 8 ~v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 8 FVEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998643
No 12
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=74.56 E-value=3 Score=34.69 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 006953 536 LTEVDLLSSVTKRLSELEEKVDTLQ 560 (624)
Q Consensus 536 ~~~~~~~~~~~~r~~~lEekv~~L~ 560 (624)
+++.+++..+++||.++|+||+.-+
T Consensus 8 iv~~~~~~~i~~rLd~iEeKvEf~~ 32 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEKVEFTN 32 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhHH
Confidence 4788999999999999999997543
No 13
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=65.56 E-value=65 Score=29.01 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006953 478 WAAVMAFFMMFVTLFRS 494 (624)
Q Consensus 478 ~~~~~~~~~~~~~~~~~ 494 (624)
|..+.|++..+++++..
T Consensus 9 w~ii~a~~~~~~~~~~~ 25 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWL 25 (106)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45566666666666663
No 14
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=60.08 E-value=28 Score=25.91 Aligned_cols=36 Identities=17% Similarity=0.412 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006953 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (624)
Q Consensus 86 ~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (624)
+.|.+|..... . ++ ..-..||.+++||++.|+..+-
T Consensus 2 e~i~~F~~iTg-------~-~~-~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITG-------A-DE-DVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH--------S-SH-HHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHC-------c-CH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 56778887762 1 23 4789999999999999998764
No 15
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=48.74 E-value=56 Score=24.10 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006953 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (624)
Q Consensus 86 ~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (624)
+.|..+++.. |. .+. ..+..-|.++++|++.|+.+|.+
T Consensus 3 ~~v~~L~~mF------P~-~~~-~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMF------PD-LDR-EVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHS------SS-S-H-HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566666665 33 233 47889999999999999998865
No 16
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=47.21 E-value=90 Score=31.88 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHH-----HHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006953 540 DLLSSVTKRLSELEEK-----VDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 612 (624)
Q Consensus 540 ~~~~~~~~r~~~lEek-----v~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~ 612 (624)
+.++..+.+|..|++- -+....++.+=+-.+|+=........+-||.||+++++.|+.+-.+=++|.-+.|..
T Consensus 114 ~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 114 RRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3466778888888871 233333334444445676777788899999999999999987655555555555443
No 17
>PHA01750 hypothetical protein
Probab=43.42 E-value=1.2e+02 Score=25.30 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006953 572 ELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 615 (624)
Q Consensus 572 e~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 615 (624)
.+|.+|+.-| +-+||.--++-++++-.||.+|-+-++..|++
T Consensus 30 q~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 30 QALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5677777644 56778888888888889999988888776654
No 18
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=42.80 E-value=88 Score=30.94 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=41.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhc-----------CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006953 538 EVDLLSSVTKRLSELEEKVDTLQ-----------AKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLL 606 (624)
Q Consensus 538 ~~~~~~~~~~r~~~lEekv~~L~-----------~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ 606 (624)
+.+++..+-.++-.||+||+.|. ..--.=|.+|+++ +.-=.||.+||.-+.+-=.+|+-----|.||-
T Consensus 70 Sr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v-~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~ 148 (189)
T TIGR02132 70 TKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDV-TKLKQDIKSLDKKLDKILELLEGQQKTQDELK 148 (189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHH-HHHHHHHHHHHHHHHHHHHHHhcCccchhHHH
Confidence 45566666666666666665543 2222456666663 55556777777776665555553333344444
Q ss_pred HHHHHH
Q 006953 607 AYIDRQ 612 (624)
Q Consensus 607 ayie~~ 612 (624)
+.|.++
T Consensus 149 ~~~~~~ 154 (189)
T TIGR02132 149 ETIQKQ 154 (189)
T ss_pred HHHHHH
Confidence 444443
No 19
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=42.40 E-value=85 Score=39.36 Aligned_cols=47 Identities=30% Similarity=0.413 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 006953 542 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEEL---LHAAVCRVDALEAELIATKKALH 596 (624)
Q Consensus 542 ~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~---L~aa~~RvdaLE~eL~~TKKaL~ 596 (624)
+..-++.++.|++++.+++ |+|+| |+.++.+.+..|++|..+.+||.
T Consensus 443 l~~~~~~~~~~~~~~~~~~--------~~~~~~keL~e~i~~lk~~~~el~~~q~~l~ 492 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQAVA--------ELEEMDKELEETIEKLKSEESELQREQKALL 492 (1317)
T ss_pred hhhHHHHhhhHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566899999999999998 77887 89999999999999999777763
No 20
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.65 E-value=1.5e+02 Score=33.70 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=50.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006953 537 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLH--AAV-----CRVDALEAELIATKKALHEALMRQEDLLAYI 609 (624)
Q Consensus 537 ~~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~--aa~-----~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 609 (624)
+..|.+..++-++.+|+.+++.|...-...=.|.|+|-+ .++ .+|++-..||+.....|.+...+...++.-+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999998876666666666643 111 2344555677777777766665555555554
No 21
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=40.51 E-value=1.2e+02 Score=35.76 Aligned_cols=64 Identities=30% Similarity=0.394 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006953 540 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDL 605 (624)
Q Consensus 540 ~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El 605 (624)
..+..+.+++.+||+..+.|..|=...|.+ +-+..-..+++.++.+|.+.+..+.....+-+++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~--e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~ 454 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSE--EQIAQLLEELGEAQNELFRSEAEIEELLRQLETL 454 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999998887764 2444445555555555555555444443333333
No 22
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=39.46 E-value=78 Score=23.36 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006953 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (624)
Q Consensus 86 ~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (624)
+.+++|++.. |. .++ ..+.+-|+++++|++.|++.|.+
T Consensus 4 ~~v~~L~~mF------P~-l~~-~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMF------PN-LDE-EVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566666554 43 233 47889999999999999988753
No 23
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=36.89 E-value=1.4e+02 Score=30.07 Aligned_cols=78 Identities=29% Similarity=0.328 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006953 539 VDLLSSVTKRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEE 614 (624)
Q Consensus 539 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP----~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~ 614 (624)
+..+....+-|.+||++...|-.+=-+.. .+=......|+.-|+.=|..|.+-|++|..+--....+-.||++-+.
T Consensus 31 Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d 110 (204)
T PF10368_consen 31 EKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIED 110 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34678889999999999999988853333 45567888999999999999999999999999999989999987764
Q ss_pred hh
Q 006953 615 AK 616 (624)
Q Consensus 615 ~k 616 (624)
.+
T Consensus 111 ~~ 112 (204)
T PF10368_consen 111 EK 112 (204)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 24
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=36.83 E-value=98 Score=24.87 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006953 580 RVDALEAELIATKKALHEALMRQEDLLAYIDRQE 613 (624)
Q Consensus 580 RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k 613 (624)
||+.||.+|-+-+-.+...=...++|-+.||+.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333344444444444
No 25
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=36.70 E-value=2.1e+02 Score=32.04 Aligned_cols=89 Identities=17% Similarity=0.295 Sum_probs=64.6
Q ss_pred CCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCCCh-----
Q 006953 168 DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSK----- 242 (624)
Q Consensus 168 Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl~G~sl~~~~~----- 242 (624)
|....|++++.+|.-. .+.+.|+++++....+ . .--++|++-.|++-..+..
T Consensus 121 ~~~~~P~vvilpGltg-------~S~~~YVr~lv~~a~~--------------~--G~r~VVfN~RG~~g~~LtTpr~f~ 177 (409)
T KOG1838|consen 121 DDGTDPIVVILPGLTG-------GSHESYVRHLVHEAQR--------------K--GYRVVVFNHRGLGGSKLTTPRLFT 177 (409)
T ss_pred CCCCCcEEEEecCCCC-------CChhHHHHHHHHHHHh--------------C--CcEEEEECCCCCCCCccCCCceee
Confidence 3456699999998754 3567899988754222 1 1347788988876544431
Q ss_pred -HHHHHHHHHHHHhcccCccccceEEEEecChHHHHHHHH
Q 006953 243 -NARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT 281 (624)
Q Consensus 243 -~~~~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lwki 281 (624)
-.-+-++.+++.+...||.+ +++.+..+.+-.++||-
T Consensus 178 ag~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nY 215 (409)
T KOG1838|consen 178 AGWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNY 215 (409)
T ss_pred cCCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHH
Confidence 12366788888899999999 89999999999998883
No 26
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=36.62 E-value=42 Score=31.83 Aligned_cols=99 Identities=16% Similarity=0.174 Sum_probs=51.0
Q ss_pred ccCCCChhHhh--hhccchhhHhhhcccchhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCC
Q 006953 27 SDFENSEDERR--TRIGSLKKKALNASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPER 104 (624)
Q Consensus 27 ~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~eE~~aV~efR~~L~~~~~LP~~ 104 (624)
.+...-+|++- .-+.+. ...-.-..++++.|.+|| .+..+-.-.++++..+++..+...+..........+.
T Consensus 53 ~~~~~ldD~~~a~~~~~~~-~~~~~g~~~I~~~L~~kG----i~~~~I~~~l~~~~~d~~e~a~~~~~k~~~~~~~~~~- 126 (157)
T PRK00117 53 KEEGLLDDERFAESFVRSR-ARKGYGPRRIRQELRQKG----VDREIIEEALAELDIDWEELARELARKKFRRPLPDDA- 126 (157)
T ss_pred HHcCCCCHHHHHHHHHHHH-HhCCchHHHHHHHHHHcC----CCHHHHHHHHHHcCccHHHHHHHHHHHHcCCCCCCCH-
Confidence 33345566662 223332 111223557889999998 5555444444544322332222222222211110000
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006953 105 HDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (624)
Q Consensus 105 ~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (624)
..-.-+.+||..++|+.+.+.+.|.+.
T Consensus 127 -~~k~Ki~~~L~rkGF~~~~I~~~l~~~ 153 (157)
T PRK00117 127 -KEKAKLVRFLARRGFSMDVIQRVLRNA 153 (157)
T ss_pred -HHHHHHHHHHHHCCCCHHHHHHHHHhh
Confidence 112468999999999999888777654
No 27
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=35.70 E-value=2e+02 Score=30.94 Aligned_cols=75 Identities=31% Similarity=0.336 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006953 541 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 615 (624)
Q Consensus 541 ~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 615 (624)
.+-.+..|.+.|++.+..|...+.++=..--+-|+++=.++.+++.++.+-|+-|.+.=.+=.++-+-|+..+..
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778888999999988887765222344566666777777777666666555544444455555444433
No 28
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.82 E-value=3e+02 Score=29.52 Aligned_cols=65 Identities=32% Similarity=0.385 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006953 542 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 615 (624)
Q Consensus 542 ~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 615 (624)
+.+.=+.+.+||.+..+. ..|+++|.=| |.+|.-|+.+|+..+|++....--| ||.+=|+..+.+
T Consensus 109 ~~~ler~i~~Le~~~~T~-----~L~~e~E~~l---vq~I~~L~k~le~~~k~~e~~~~~~-el~aei~~lk~~ 173 (294)
T COG1340 109 IKSLEREIERLEKKQQTS-----VLTPEEEREL---VQKIKELRKELEDAKKALEENEKLK-ELKAEIDELKKK 173 (294)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 466678899999998874 4688888766 6677779999999999999988775 566666666543
No 29
>PRK09039 hypothetical protein; Validated
Probab=33.58 E-value=3.5e+02 Score=29.49 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 006953 481 VMAFFMMFVTLFRSVAYRV 499 (624)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~ 499 (624)
|+.||+.||.+.-+|.+.-
T Consensus 29 ~~~f~l~~f~~~q~fLs~~ 47 (343)
T PRK09039 29 VIMFLLTVFVVAQFFLSRE 47 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4457778887777776553
No 30
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=33.06 E-value=1.7e+02 Score=35.23 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH
Q 006953 550 SELEEKVDTLQAKPSEMPYE---KEELLHAAVCRVDALEAELIATKKALHEALMRQ-EDLLAYIDRQE 613 (624)
Q Consensus 550 ~~lEekv~~L~~KP~~mP~E---KEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ-~El~ayie~~k 613 (624)
.++++-+..++-..-.+|.. -++++++--.|++.++++++.|++.|.+.+.+- ++|.++-+..+
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 271 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLR 271 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888777764 468999999999999999999999999876653 45555544444
No 31
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.38 E-value=2.1e+02 Score=28.39 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=53.4
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHh
Q 006953 554 EKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHE---ALMRQEDLLAYIDRQEEA 615 (624)
Q Consensus 554 ekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~---al~kQ~El~ayie~~k~~ 615 (624)
|-|+...+||.--+.++..+|++..---+-+|.-|.++++.|.+ .+.+=.||+.++.+++.+
T Consensus 22 edV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~ 86 (187)
T KOG3313|consen 22 EDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDE 86 (187)
T ss_pred HHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCccc
Confidence 45778889999999999999999999999999999999999986 456777888888776543
No 32
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.97 E-value=1.9e+02 Score=27.54 Aligned_cols=69 Identities=26% Similarity=0.288 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCC---chhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006953 539 VDLLSSVTKRLSELEEKVDTLQAKPSEM---PYEKEELL---HAAVCRVDALEAELIATKKALHEALMRQEDLLA 607 (624)
Q Consensus 539 ~~~~~~~~~r~~~lEekv~~L~~KP~~m---P~EKEe~L---~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~a 607 (624)
..++.++-++++.||..|+.+..+=.+. ..+.+... -+.-+||..||.||..+-+.|-+|..|=.+.-.
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888777776553322 22333322 135578999999999999999999877655433
No 33
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.73 E-value=2.5e+02 Score=32.39 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHHH
Q 006953 571 EELLHAAVCRVDALEAELIATKKA--------------LHEALMRQEDL 605 (624)
Q Consensus 571 Ee~L~aa~~RvdaLE~eL~~TKKa--------------L~~al~kQ~El 605 (624)
++=|+.+-.+|..||.||..|++- |.+.|.+|.|=
T Consensus 461 ~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 461 EEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455889999999999999999984 55666666653
No 34
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=31.31 E-value=42 Score=25.35 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 006953 589 IATKKALHEALMRQEDLLAYIDRQE 613 (624)
Q Consensus 589 ~~TKKaL~~al~kQ~El~ayie~~k 613 (624)
+.+|++|. +-||||.+|...++
T Consensus 13 QsAkqmln---ILQEELssy~~E~~ 34 (44)
T PF13080_consen 13 QSAKQMLN---ILQEELSSYPQEQP 34 (44)
T ss_pred HHHHHHHH---HHHHHHHhchhhcc
Confidence 46788886 67999999997665
No 35
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=30.67 E-value=4.1e+02 Score=25.08 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006953 545 VTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 613 (624)
Q Consensus 545 ~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k 613 (624)
++..-..+|.-++.| |.+..--|+- ..||+.||.|+...-+-|.+++.+=++|++-|+..-
T Consensus 78 Ii~kakqIe~LIdsL----Pg~~~see~Q----~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i 138 (144)
T PF11221_consen 78 IIRKAKQIEYLIDSL----PGIEVSEEEQ----LKRIKELEEENEEAEEELQEAVKEAEELLKQVQELI 138 (144)
T ss_dssp HHHHHHHHHHHHHHS----TTSSS-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555 4444333332 289999999999999999999999999999887653
No 36
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=29.77 E-value=3.1e+02 Score=32.85 Aligned_cols=75 Identities=24% Similarity=0.241 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006953 538 EVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEEL----LHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 612 (624)
Q Consensus 538 ~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~----L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~ 612 (624)
+.+...+=++|.-.+|+.=.+=+-.=+.--.|.+++ +++|+.++..|++||+.+||-|.++.---+-|...+|++
T Consensus 171 ~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~L 249 (916)
T KOG0249|consen 171 QLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDL 249 (916)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344455556666555554332111111111133322 579999999999999999999988765545555555443
No 37
>PRK14137 recX recombination regulator RecX; Provisional
Probab=29.29 E-value=1.1e+02 Score=30.63 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 006953 109 HMMLRFLKARKFDIDKAKHMWAEMLQW 135 (624)
Q Consensus 109 ~~LLRFLrArkfDvekA~k~l~~~l~W 135 (624)
.-+.+||..++|+.+.+...|.+.+.-
T Consensus 156 ~K~~~~L~rRGFs~~~I~~al~~~~~~ 182 (195)
T PRK14137 156 ASAYAFLARRGFSGAVIWPAIREVAAL 182 (195)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 468899999999999988888875443
No 38
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=29.01 E-value=1.3e+02 Score=25.78 Aligned_cols=31 Identities=39% Similarity=0.447 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006953 583 ALEAELIATKKALHEALMRQEDLLAYIDRQE 613 (624)
Q Consensus 583 aLE~eL~~TKKaL~~al~kQ~El~ayie~~k 613 (624)
.|+-.|...+..|.++...|.+|.+.|++..
T Consensus 11 ~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~ 41 (92)
T PF14712_consen 11 LLEPDLDRLDQQLQELRQSQEELLQQIDRLN 41 (92)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666554
No 39
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=27.36 E-value=4.2e+02 Score=27.48 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006953 547 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALM 600 (624)
Q Consensus 547 ~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~ 600 (624)
..+.-+|..+..-+. ..+=+..-||||.|..||-.-|++-......-.....
T Consensus 98 e~v~laEq~l~~~~~--~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~ 149 (239)
T PF05276_consen 98 EMVALAEQSLMSDSN--WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRAR 149 (239)
T ss_pred HHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778887776444 5688999999999999999888887777766554433
No 40
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=27.29 E-value=1.5e+02 Score=29.29 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=25.7
Q ss_pred CCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006953 98 DELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (624)
Q Consensus 98 ~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (624)
.+.+|....+..-+.|||..++|+.+-+...|...
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 33344444555789999999999999888777654
No 41
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=26.96 E-value=2.2e+02 Score=29.49 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhH-----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHH
Q 006953 542 LSSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAELIATK-------KALHEALMRQEDLLAYI 609 (624)
Q Consensus 542 ~~~~~~r~~~lEekv~~L~~KP~~mP~EK-----Ee~L~aa~~RvdaLE~eL~~TK-------KaL~~al~kQ~El~ayi 609 (624)
-..|++.|+||... ....++.+-|.| ..=+.+.+.|+..||..|..-. ..+++...+..+|.+-|
T Consensus 182 r~~~~~~l~el~~r---~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i 258 (268)
T PF13234_consen 182 RKQVLKSLQELLKR---FPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEI 258 (268)
T ss_dssp HHHHHHHHHHHHHH---SSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 34555666555555 233344444432 3445556666666666665543 34566666666666666
Q ss_pred HHHHH
Q 006953 610 DRQEE 614 (624)
Q Consensus 610 e~~k~ 614 (624)
+..|+
T Consensus 259 ~~Lk~ 263 (268)
T PF13234_consen 259 KALKR 263 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 42
>PHA00687 hypothetical protein
Probab=26.82 E-value=1.4e+02 Score=23.00 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=21.7
Q ss_pred CCCchhHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 006953 564 SEMPYEKEELLHAA----------VCRVDALEAELIATKK 593 (624)
Q Consensus 564 ~~mP~EKEe~L~aa----------~~RvdaLE~eL~~TKK 593 (624)
...|+|--.+|+.| +.||++||.--+..|+
T Consensus 9 ttlppeamrllqqaaqtpitradplarvkaiekatervkr 48 (56)
T PHA00687 9 TTLPPEAMRLLQQAAQTPITRADPLARVKAIEKATERVKR 48 (56)
T ss_pred ccCCHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Confidence 35788888888766 6788888876665554
No 43
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=26.75 E-value=4.2e+02 Score=28.05 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 006953 540 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAA 577 (624)
Q Consensus 540 ~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa 577 (624)
..++-.|-|+..|+..++..+.+-+++.+.+++.|-+.
T Consensus 52 ~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~l 89 (268)
T PF11802_consen 52 AQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTL 89 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHH
Confidence 45677789999999999999999999999988887643
No 44
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=26.25 E-value=1.3e+02 Score=32.91 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=42.6
Q ss_pred ccCcccccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCC
Q 006953 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (624)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl~G~sl 237 (624)
..||+|.|.|++|++.++...|+-|..-+.+-.....|-+..+......+. +.+.. -.+|||++..+-
T Consensus 199 ~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~pNy~~~di~~~~~~l~----------~~~lp-~~vmVD~SH~ns 266 (344)
T TIGR00034 199 AAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGKKPNYSAADVAAAKKQLE----------KAGLP-PHLMIDFSHGNS 266 (344)
T ss_pred hCCceeeecCCCCcEEEEECCCCCCEEEEecCCCCCCCCHHHHHHHHHHHH----------HcCCC-CeEEEeCCCccc
Confidence 578899999999999999999987765544422223444433433333322 12222 458999987643
No 45
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.91 E-value=3.1e+02 Score=30.79 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcC--CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006953 541 LLSSVTKRLSELEEKVDTLQA--KPSEMPYEKEELLHAAVCRVDALEAELIATKKAL 595 (624)
Q Consensus 541 ~~~~~~~r~~~lEekv~~L~~--KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL 595 (624)
++..+-++|.+|+..+..|.. +...+|+++.++++........|.++|.+.+.-|
T Consensus 342 ~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 342 ELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777766665 4567889999888887777777777666555444
No 46
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.74 E-value=2.9e+02 Score=27.10 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=67.5
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccccccccccccCCCCCCCCcchhhhHH-HHHH
Q 006953 469 TPEGIRARIWAAVMAFFMMFVTLFRSVAYRVTHRIPETSTGHDLNISEVAVDANEKEEFRPPSPSPSLTEVDLLS-SVTK 547 (624)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 547 (624)
+...+..++-...+-++.++..++..+...+ +.+..-... .+ +..-+++..+.+. .+-+
T Consensus 47 a~dsiK~y~~~vh~pll~~~~~~~~~~~~~l-~~~~~~~~~---------vd----------~~~~a~i~e~~L~~el~~ 106 (204)
T PF04740_consen 47 AYDSIKNYFSEVHIPLLQGLILLLEEYQEAL-KFIKDFQSE---------VD----------SSSNAIIDEDFLESELKK 106 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH---------Hc----------ccccccccHHHHHHHHHH
Confidence 4455567777778888888888888766665 332221111 00 0111347777777 6678
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006953 548 RLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMR 601 (624)
Q Consensus 548 r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~k 601 (624)
.|.++++.+..+...-..+-.+=.+++.-..-..+.+...+...|+-|.+++.|
T Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lek 160 (204)
T PF04740_consen 107 KLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEK 160 (204)
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887766554444444553333333455666666667666666655
No 47
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=25.63 E-value=3.7e+02 Score=29.51 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=42.9
Q ss_pred ccCcccccCCCCCCcEEEEecCcCCcchhhhcc-cHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCC
Q 006953 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVT-TMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 236 (624)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~-t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl~G~s 236 (624)
..||.|.|.|++|++.++.-.|+-|..-+.+-. +...|-+..+......+. +.. ...-+|||++..+
T Consensus 204 ~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~~pNy~~~~i~~~~~~l~----------k~~-l~~~v~VD~SH~n 271 (349)
T PRK09261 204 SAPHHFLGITKDGRSAIVSTTGNPDCHVILRGGNKGPNYDAESVAEAKERLE----------KAG-LPPRIMIDCSHAN 271 (349)
T ss_pred hCCceeeecCCCCcEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH----------HcC-CCCCEEEECCCcc
Confidence 357788899999999999999988766554432 344444444433333222 111 2467899998754
No 48
>PRK14136 recX recombination regulator RecX; Provisional
Probab=25.60 E-value=86 Score=33.67 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q 006953 108 YHMMLRFLKARKFDIDKAKHMWAE 131 (624)
Q Consensus 108 ~~~LLRFLrArkfDvekA~k~l~~ 131 (624)
..-+.|||..+.|+.+...+.|..
T Consensus 278 k~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 278 RAKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHh
Confidence 357789999999999988777754
No 49
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=25.29 E-value=2.2e+02 Score=28.34 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 006953 590 ATKKALHEALMR 601 (624)
Q Consensus 590 ~TKKaL~~al~k 601 (624)
+|.--|.+|.-|
T Consensus 142 ~~~~~~~~~~~~ 153 (189)
T TIGR02132 142 KTQDELKETIQK 153 (189)
T ss_pred cchhHHHHHHHH
Confidence 344444454443
No 50
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=24.94 E-value=2.4e+02 Score=26.48 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006953 543 SSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLL 606 (624)
Q Consensus 543 ~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ 606 (624)
....+|+.+.|..+..|...-. -=..+=.-..+.+.+|+.|-..|.++...|++++.-=+.|-
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~-erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN 114 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMV-ERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLN 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999988876533 11344455678899999999999999999998875444333
No 51
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=24.83 E-value=2.3e+02 Score=29.70 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHHHHHHhhhh
Q 006953 598 ALMRQEDLLAYIDRQEEAKFR 618 (624)
Q Consensus 598 al~kQ~El~ayie~~k~~k~~ 618 (624)
+=.-|+-+.+++||+++||-+
T Consensus 250 s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 250 EPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred CHHHHHHHHHHHHHHhhcccc
Confidence 335588899999999988854
No 52
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.78 E-value=5.3e+02 Score=26.11 Aligned_cols=73 Identities=12% Similarity=0.164 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 006953 544 SVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAK 616 (624)
Q Consensus 544 ~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k 616 (624)
.+=+.|++|+++.+.+...-.+-=.|..+-|.++=.-|..|+.|...-++-|..+-.+-++|-+-++.+++..
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433222222334444455555666677776666666666555555666666666543
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.43 E-value=2.1e+02 Score=32.64 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006953 539 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 613 (624)
Q Consensus 539 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k 613 (624)
.+.++.+...+.+|++++..|..+=.+.=...++ ++....|+..|+.++...+..|++...+..+|-+=|++.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888888887775544344444 7778899999999999999998887777666666665554
No 54
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.33 E-value=95 Score=30.44 Aligned_cols=32 Identities=38% Similarity=0.417 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006953 569 EKEELLHAAVCRVDALEAELIATKKALHEALMR 601 (624)
Q Consensus 569 EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~k 601 (624)
|=|..||.|+.|-=-||.||+. |-.|.+.+-|
T Consensus 4 D~EsklN~AIERnalLE~ELdE-KE~L~~~~QR 35 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDE-KENLREEVQR 35 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHCH--
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 4578899999999999999977 8888877755
No 55
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=24.16 E-value=2.4e+02 Score=31.04 Aligned_cols=68 Identities=13% Similarity=0.016 Sum_probs=43.1
Q ss_pred ccCcccccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCC
Q 006953 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (624)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl~G~sl 237 (624)
..||.|.|.|++|++.++.-.|+-|..-+++-.....|-...+......+.. ... .-.++||++.-+-
T Consensus 204 ~~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~~----------~~l-~~~vmVDcSH~NS 271 (356)
T PRK12822 204 RSPHLVTVPGLTGCISTLLSDGNPHGHIILRGGREPNYGLSDVTKASKLLHD----------EGL-NHRLIIDCSHGNS 271 (356)
T ss_pred cCCCeEEecCCCCcEEEEEcCCCCCceEEEeCCCCCCCCHHHHHHHHHHHHH----------CCC-CCcEEEECCCccC
Confidence 4678889999999999999999988776665333333333333333332221 122 2468999987754
No 56
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=23.91 E-value=4.1e+02 Score=27.63 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhc---------CCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006953 542 LSSVTKRLSELEEKVDTLQ---------AKP-SEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDR 611 (624)
Q Consensus 542 ~~~~~~r~~~lEekv~~L~---------~KP-~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~ 611 (624)
...++.+...+|.+|..|. +|| -+|=..=+++|++.-.||..||+++..+|.--.+||-.-++|.+-|=.
T Consensus 144 H~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~ 223 (239)
T PF05276_consen 144 HQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHE 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666665 333 134445688999999999999999999999999999999999999866
Q ss_pred HHHh
Q 006953 612 QEEA 615 (624)
Q Consensus 612 ~k~~ 615 (624)
+...
T Consensus 224 ~R~~ 227 (239)
T PF05276_consen 224 QRRR 227 (239)
T ss_pred HHhh
Confidence 5544
No 57
>PF15294 Leu_zip: Leucine zipper
Probab=23.39 E-value=2.1e+02 Score=30.37 Aligned_cols=61 Identities=36% Similarity=0.468 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 006953 547 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 618 (624)
Q Consensus 547 ~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 618 (624)
+-|.+||.++..|. .|=|.-+++.-.--++||.+|..| +|+-|..|++ ++..++-=++||+
T Consensus 190 q~l~dLE~k~a~lK-------~e~ek~~~d~~~~~k~L~e~L~~~---KhelL~~Qeq-L~~aekeLekKfq 250 (278)
T PF15294_consen 190 QDLSDLENKMAALK-------SELEKALQDKESQQKALEETLQSC---KHELLRVQEQ-LSLAEKELEKKFQ 250 (278)
T ss_pred cchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchh-hhcchhhHHHHhC
Confidence 55778899988884 344566777777889999999998 5677888888 6666665566655
No 58
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.30 E-value=2.3e+02 Score=27.80 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006953 541 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELL----HAAVCRVDALEAELIATKKALHEALMRQE 603 (624)
Q Consensus 541 ~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L----~aa~~RvdaLE~eL~~TKKaL~~al~kQ~ 603 (624)
.+.+++++|..+|+++..+..+...--..+++.+ ...-.-|+.|+.||.++++-+ ++|-+|-
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~-~~LkkQ~ 184 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI-EALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4567889999999999998887654444444332 222233445555555533222 2444443
No 59
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=23.08 E-value=77 Score=30.71 Aligned_cols=95 Identities=15% Similarity=0.233 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccccccccccccCCCCCCCCcchhhh-HHHHHHHHHHH
Q 006953 474 RARIWAAVMAFFMMFVTLFRSVAYRVTHRIPETSTGHDLNISEVAVDANEKEEFRPPSPSPSLTEVDL-LSSVTKRLSEL 552 (624)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~l 552 (624)
..+++..+++|++-++-+-+.+..++++-+........ . . +.+++. -...-+-.++.
T Consensus 10 ~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~-------~-~--------------L~~Ae~~k~eAe~l~a~y 67 (155)
T PRK06569 10 YSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQ-------D-N--------------ITQADTLTIEVEKLNKYY 67 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------h-H--------------HHHHHHHHHHHHHHHHHH
Confidence 57888888888888887888777777655543321100 0 0 001111 11112233445
Q ss_pred HHHHHHhcCCCCCCchh-HHHHHHHHHHHHHHHHHHHHH
Q 006953 553 EEKVDTLQAKPSEMPYE-KEELLHAAVCRVDALEAELIA 590 (624)
Q Consensus 553 Eekv~~L~~KP~~mP~E-KEe~L~aa~~RvdaLE~eL~~ 590 (624)
|+.+..-..+-.+|=.| .+++-.+|..+.+++|++|..
T Consensus 68 e~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~ 106 (155)
T PRK06569 68 NEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKN 106 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555556666 566666666666777776643
No 60
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.72 E-value=1.1e+02 Score=28.47 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=24.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q 006953 472 GIRARIWAAVMAFFMMFVTLFRSVAYRVTHRI 503 (624)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (624)
+-..-|+.|+||-|+++..++-++.+|+.|+.
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34688999999999999888888888777664
No 61
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=22.16 E-value=1.4e+02 Score=29.79 Aligned_cols=31 Identities=45% Similarity=0.447 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 006953 568 YEKEELLHAAVCRVDALEAE-------LIATKKALHEA 598 (624)
Q Consensus 568 ~EKEe~L~aa~~RvdaLE~e-------L~~TKKaL~~a 598 (624)
.||-.||.+|=.||+.|... |++||++-+-+
T Consensus 140 ~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 140 AEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999865 56666665543
No 62
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=21.73 E-value=2.3e+02 Score=27.24 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006953 539 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALM 600 (624)
Q Consensus 539 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~ 600 (624)
..+|..+.+-|. ||+..+.-+|- +-.-=+|-|+=|+--|+-|=..|++-|+|.+.|+.
T Consensus 2 keE~~~~~~~l~--~Ek~eHaKTK~--lLake~EKLqfAlgeieiL~kQl~rek~afe~a~~ 59 (153)
T PF15175_consen 2 KEEFEAVEKKLE--EEKAEHAKTKA--LLAKESEKLQFALGEIEILSKQLEREKLAFEKALG 59 (153)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHH--HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888887 78888877762 23333578999999999999999999999988854
No 63
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=21.43 E-value=2.8e+02 Score=30.40 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=44.2
Q ss_pred ccCcccccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCC
Q 006953 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (624)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl~G~sl 237 (624)
..||.|.|.|++|++.++.-.|+-|..-+++-.....|-...+......+. +.... -.++||++.-+-
T Consensus 203 ~~~H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~----------~~~l~-~~imVDcSH~NS 270 (348)
T PRK12756 203 RASHMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKPNYHAEDIAAACDTLR----------EFDLP-EHLVVDFSHGNC 270 (348)
T ss_pred hCCCeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCCCCCCHHHHHHHHHHHH----------HCCCC-CcEEEECCCccc
Confidence 467888999999999999999998877666543333343334433333332 12222 468999987654
No 64
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.04 E-value=8.9e+02 Score=24.83 Aligned_cols=50 Identities=26% Similarity=0.249 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006953 540 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKAL 595 (624)
Q Consensus 540 ~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL 595 (624)
..+..+..+..++|++...--.+-. |++-..++.|+..||..+...+..+
T Consensus 59 ~~~~~~~~~~~k~e~~A~~Al~~g~------E~LAr~al~~~~~le~~~~~~~~~~ 108 (225)
T COG1842 59 RKLEEAQARAEKLEEKAELALQAGN------EDLAREALEEKQSLEDLAKALEAEL 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888876666544 9999999999998887766555443
No 65
>PF14282 FlxA: FlxA-like protein
Probab=20.75 E-value=4e+02 Score=23.87 Aligned_cols=51 Identities=16% Similarity=0.378 Sum_probs=38.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHHHHHH
Q 006953 538 EVDLLSSVTKRLSELEEKVDTLQAKPSEMPY-EKEELLHAAVCRVDALEAELI 589 (624)
Q Consensus 538 ~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~-EKEe~L~aa~~RvdaLE~eL~ 589 (624)
....+..+-+++.+|.+++..|... ..|++ +|.+....=-.-|..||+.|.
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~-~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQD-SDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999995 23454 566555555557778888775
No 66
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=20.68 E-value=4.4e+02 Score=29.63 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 006953 474 RARIWAAVMAFFMMFVTLFRS 494 (624)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~ 494 (624)
.+.+++.++++|++++++|-.
T Consensus 68 agFfvaflvslVL~~l~~f~l 88 (429)
T PF12297_consen 68 AGFFVAFLVSLVLTWLCFFLL 88 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777776666653
No 67
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=20.66 E-value=3.9e+02 Score=28.97 Aligned_cols=62 Identities=27% Similarity=0.341 Sum_probs=45.5
Q ss_pred chhhhHHHHHH----HHHHHHHHHHHhc-----CCCCCCchhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006953 537 TEVDLLSSVTK----RLSELEEKVDTLQ-----AKPSEMPYEKE-----ELLHAAVCRVDALEAELIATKKALHEA 598 (624)
Q Consensus 537 ~~~~~~~~~~~----r~~~lEekv~~L~-----~KP~~mP~EKE-----e~L~aa~~RvdaLE~eL~~TKKaL~~a 598 (624)
.+.|.|.-|+. |-+.|+.+..++. .--+.+|++++ .+|..+-.|.+.|..|+..-+.=|.|+
T Consensus 23 ~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 23 SERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667665544 5557888888777 44445888877 889999999999999987766554443
No 68
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.53 E-value=5.2e+02 Score=27.87 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhHHHHH
Q 006953 541 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDA--------------LEAELIATKKALHEALMRQEDLL 606 (624)
Q Consensus 541 ~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~Rvda--------------LE~eL~~TKKaL~~al~kQ~El~ 606 (624)
.+-.+.++.+.|+.++..|..-+.+|=.=.-+.|+.+=..+.. ++.+|..-+..+.+.-.+..|+.
T Consensus 173 ~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 173 IKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778889999999999888887622112233333344444 44455555555555555555555
Q ss_pred HHHHHHHH
Q 006953 607 AYIDRQEE 614 (624)
Q Consensus 607 ayie~~k~ 614 (624)
+-|-..++
T Consensus 253 ~~I~~ae~ 260 (312)
T smart00787 253 TEIAEAEK 260 (312)
T ss_pred HHHHHHHH
Confidence 55544443
No 69
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=20.30 E-value=5e+02 Score=24.44 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=38.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH----HhHHHHHHHHHHHHHhh
Q 006953 567 PYEKEELLHAAVCRVDALEAELI----ATKKALHEAL----MRQEDLLAYIDRQEEAK 616 (624)
Q Consensus 567 P~EKEe~L~aa~~RvdaLE~eL~----~TKKaL~~al----~kQ~El~ayie~~k~~k 616 (624)
|.=||+++..--..+..+|.||. -.||++.+.- .....|-++++..+...
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r 72 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQER 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Confidence 45689999999999999999886 4788888865 55566778887776544
No 70
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=20.12 E-value=98 Score=29.02 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhc
Q 006953 538 EVDLLSSVTKRLSELEEKVDTLQ 560 (624)
Q Consensus 538 ~~~~~~~~~~r~~~lEekv~~L~ 560 (624)
-+-.+-.+|+||..||.||+.|-
T Consensus 84 iAVLLddiLqRl~kLE~kvd~lv 106 (138)
T PF15027_consen 84 IAVLLDDILQRLVKLESKVDNLV 106 (138)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHe
Confidence 34457889999999999999863
Done!