Query 006953
Match_columns 624
No_of_seqs 346 out of 1569
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 1.6E-55 5.4E-60 464.4 20.9 271 71-345 27-304 (320)
2 1aua_A Phosphatidylinositol tr 100.0 1.8E-54 6.2E-59 449.9 22.6 269 73-345 20-289 (296)
3 1olm_A SEC14-like protein 2; l 100.0 1.8E-45 6E-50 398.4 25.0 248 72-326 1-249 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 1.6E-44 5.6E-49 379.6 19.4 235 75-325 47-295 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 2.3E-44 7.9E-49 366.2 17.1 229 80-324 4-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.1 5.6E-11 1.9E-15 121.2 6.0 135 158-314 9-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 1.3E-09 4.5E-14 112.9 4.3 131 162-314 32-163 (290)
8 2hy6_A General control protein 70.4 1.2 4E-05 30.8 0.6 16 547-562 1-16 (34)
9 2bni_A General control protein 70.2 1.2 4E-05 30.8 0.6 16 547-562 1-16 (34)
10 3c3g_A Alpha/beta peptide with 70.2 5.2 0.00018 27.4 3.7 14 548-561 1-14 (33)
11 2oxj_A Hybrid alpha/beta pepti 68.3 6 0.0002 27.3 3.7 30 547-584 1-30 (34)
12 1uo4_A General control protein 68.0 5.4 0.00018 27.6 3.4 14 548-561 2-15 (34)
13 2wq1_A General control protein 67.9 7.6 0.00026 26.6 4.1 14 548-561 1-14 (33)
14 3c3f_A Alpha/beta peptide with 67.8 7.6 0.00026 26.8 4.1 15 547-561 1-15 (34)
15 1m7k_A Silencer of death domai 65.8 12 0.0004 32.4 6.0 68 537-611 21-97 (99)
16 3a8y_C BAG family molecular ch 64.1 20 0.00067 32.9 7.5 68 539-613 33-109 (142)
17 3m48_A General control protein 63.2 7 0.00024 26.9 3.3 13 548-560 1-13 (33)
18 1kd8_A GABH AIV, GCN4 acid bas 59.8 11 0.00039 26.3 3.9 14 547-560 1-14 (36)
19 1m62_A BAG-family molecular ch 59.0 29 0.001 29.1 7.2 66 539-611 10-84 (87)
20 1nkp_A C-MYC, MYC proto-oncoge 58.0 46 0.0016 27.7 8.3 66 547-612 16-85 (88)
21 2dam_A ETEA protein; KIAA0887, 54.3 43 0.0015 26.5 7.2 45 79-131 13-57 (67)
22 1kd8_B GABH BLL, GCN4 acid bas 53.6 24 0.00081 24.7 4.6 16 547-562 1-16 (36)
23 1nkp_B MAX protein, MYC proto- 52.5 64 0.0022 26.3 8.3 63 547-609 12-77 (83)
24 2dhy_A CUE domain-containing p 50.6 21 0.00071 28.5 4.7 44 81-132 15-58 (67)
25 2r2v_A GCN4 leucine zipper; co 49.3 24 0.00084 24.3 4.1 16 547-562 1-16 (34)
26 1wgl_A TOLL-interacting protei 49.3 19 0.00065 28.0 4.2 39 86-132 11-49 (59)
27 2dal_A Protein KIAA0794; FAS a 43.3 51 0.0017 25.6 5.9 41 81-130 12-52 (62)
28 3htk_A Structural maintenance 42.3 1.1E+02 0.0037 23.1 7.7 46 570-615 10-55 (60)
29 1uk5_A BAG-family molecular ch 40.7 62 0.0021 28.4 6.6 68 539-613 29-105 (111)
30 1ugo_A BCL2-associated athanog 39.7 42 0.0014 28.9 5.2 66 540-612 18-92 (99)
31 1yke_B RNA polymerase II holoe 39.5 1.9E+02 0.0064 26.6 10.0 68 538-613 51-126 (151)
32 1ic2_A Tropomyosin alpha chain 38.5 77 0.0026 25.8 6.6 59 542-604 15-73 (81)
33 1v92_A NSFL1 cofactor P47; 3-h 38.2 51 0.0018 23.5 4.9 38 84-130 5-42 (46)
34 3e3v_A Regulatory protein RECX 38.0 23 0.00079 33.3 3.7 78 50-132 85-163 (177)
35 3rrk_A V-type ATPase 116 kDa s 37.2 1.2E+02 0.0043 30.9 9.6 65 550-614 199-269 (357)
36 2p2u_A HOST-nuclease inhibitor 37.0 2.3E+02 0.008 26.3 10.5 69 534-615 10-78 (171)
37 3etw_A Adhesin A; antiparallel 35.4 89 0.0031 27.7 6.8 74 543-616 5-108 (119)
38 2q9q_C DNA replication complex 32.6 98 0.0033 29.4 7.3 26 565-590 20-45 (196)
39 1pl5_A Regulatory protein SIR4 32.5 66 0.0023 27.9 5.3 40 579-618 95-134 (142)
40 2dah_A Ubiquilin-3; UBA domain 31.2 1E+02 0.0036 23.2 5.7 38 86-132 11-48 (54)
41 2oqq_A Transcription factor HY 30.6 34 0.0012 24.8 2.6 16 545-560 15-30 (42)
42 1nyh_A Regulatory protein SIR4 30.3 75 0.0026 28.2 5.4 40 579-618 119-158 (166)
43 1ykh_B RNA polymerase II holoe 30.0 3E+02 0.01 24.5 12.0 67 538-612 51-125 (132)
44 1z96_A DNA-damage, UBA-domain 28.3 85 0.0029 21.4 4.5 21 109-129 19-39 (40)
45 1wr1_B Ubiquitin-like protein 28.0 1.2E+02 0.004 23.4 5.6 26 106-131 30-55 (58)
46 3e21_A HFAF1, FAS-associated f 27.5 1.3E+02 0.0046 21.9 5.5 37 84-128 5-41 (45)
47 2ke4_A CDC42-interacting prote 27.2 79 0.0027 27.0 4.9 46 552-598 41-88 (98)
48 1ufz_A Hypothetical protein BA 26.3 99 0.0034 25.7 5.1 41 85-132 35-75 (83)
49 1vej_A Riken cDNA 4931431F19; 25.6 1.2E+02 0.0039 24.7 5.4 37 86-131 31-67 (74)
50 3dfg_A Xcrecx, regulatory prot 25.6 41 0.0014 31.0 3.1 75 50-130 83-157 (162)
51 2dna_A Unnamed protein product 25.3 1.4E+02 0.0048 23.7 5.7 45 78-131 11-57 (67)
52 2z5i_I TM, tropomyosin alpha-1 25.0 49 0.0017 23.8 2.6 20 575-594 20-39 (40)
53 3u1c_A Tropomyosin alpha-1 cha 24.3 1.3E+02 0.0044 25.6 5.8 56 545-604 21-76 (101)
54 3hf0_A GCN4-PLI SIDE chain seq 24.3 1.4E+02 0.0049 19.9 4.5 28 570-597 6-33 (34)
55 3d5l_A Regulatory protein RECX 23.5 40 0.0014 32.7 2.7 73 50-130 128-204 (221)
56 2di0_A Activating signal coint 22.0 1.8E+02 0.0062 23.4 5.8 45 79-131 8-52 (71)
57 1hlo_A Protein (transcription 21.8 1.1E+02 0.0038 24.7 4.7 47 547-593 22-71 (80)
58 2ql2_B Neurod1, neurogenic dif 21.7 1.1E+02 0.0036 23.7 4.3 43 547-589 12-58 (60)
59 4aya_A DNA-binding protein inh 20.9 1.3E+02 0.0043 25.8 4.9 45 546-590 34-82 (97)
60 2l5g_B Putative uncharacterize 20.4 1.6E+02 0.0055 21.3 4.6 35 569-607 3-37 (42)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.6e-55 Score=464.39 Aligned_cols=271 Identities=36% Similarity=0.641 Sum_probs=247.4
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccch
Q 006953 71 VSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (624)
Q Consensus 71 v~s~~ied~~d~eE~~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~~~d~i~~d~~~ 150 (624)
.+++...++ +++|+++|++||+||.+++ ++...|| .+||||||||+||+++|.+||.++++||+++++|.+..++.+
T Consensus 27 ~~~g~~~~l-t~~q~~~l~~lR~~l~~~~-~~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~ 103 (320)
T 3q8g_A 27 ALPGTPGNL-TKEQEEALLQFRSILLEKN-YKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYEN 103 (320)
T ss_dssp SCTTSTTCC-CHHHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred CCCCCCCCC-CHHHHHHHHHHHHHHHhcC-CCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 445544454 7889999999999999988 4556677 599999999999999999999999999999999999877655
Q ss_pred H------HHHHHHhccCcccccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCC
Q 006953 151 K------EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHID 224 (624)
Q Consensus 151 ~------el~~vlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~ 224 (624)
+ +...+.++++++++|+|++||||+|+++|++|+.++++.++.+++++++++.+|.+++.++++|+...+..++
T Consensus 104 ~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve 183 (320)
T 3q8g_A 104 NKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIE 183 (320)
T ss_dssp THHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCC
T ss_pred ccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcc
Confidence 4 4455778999999999999999999999999999988888999999999999999998888889888888899
Q ss_pred CeEEEEeCCCCCCCCCChHHHHHHHHHHHHhcccCccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhH
Q 006953 225 SSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSK 304 (624)
Q Consensus 225 ~~tiIiDl~G~sl~~~~~~~~~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lwkiVKpFLdpkT~~KI~~lg~~~~~~ 304 (624)
++++|+|++|+++++++. .+.+++.+++++|+|||+||+++||||+|++|.++|+++++||+++|++||+|+++++.+.
T Consensus 184 ~~~~IiD~~g~sl~~~~~-~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~ 262 (320)
T 3q8g_A 184 TSCTVLDLKGISLSNAYH-VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE 262 (320)
T ss_dssp CEEEEEECTTCCHHHHHH-THHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHH
T ss_pred eeEEEEECCCCCHHHHHH-HHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHH
Confidence 999999999999999864 3788999999999999999999999999999999999999999999999999999888899
Q ss_pred HHhhcCCCCCccccCCCcCCCC-CCCCccCCCCCCCCHHHHH
Q 006953 305 LLEIIDARELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILK 345 (624)
Q Consensus 305 L~e~Id~~~LP~eyGGt~~~~~-~ggcl~~~~gpW~~p~~~k 345 (624)
|.++||+++||++|||+++|.+ +|||+.+|.|||+||++++
T Consensus 263 L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~ 304 (320)
T 3q8g_A 263 LLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG 304 (320)
T ss_dssp HHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred HHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence 9999999999999999999976 7999999999999999876
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.8e-54 Score=449.94 Aligned_cols=269 Identities=36% Similarity=0.677 Sum_probs=244.9
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchHH
Q 006953 73 SVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKE 152 (624)
Q Consensus 73 s~~ied~~d~eE~~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~~~d~i~~d~~~~e 152 (624)
++...++ +++|+++|++||+||.+++ ++...|| .+||||||||+||+++|.+||.++++||++++++.+..++.+.+
T Consensus 20 ~~~~~~l-~~~q~~~l~~lr~~l~~~~-~~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~ 96 (296)
T 1aua_A 20 PGTPGNL-DSAQEKALAELRKLLEDAG-FIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDE 96 (296)
T ss_dssp TTSTTTC-CTTHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTT
T ss_pred CCCCCCC-CHHHHHHHHHHHHHHHhcC-CCCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCc
Confidence 3333343 7788999999999999888 4566677 59999999999999999999999999999999998877665544
Q ss_pred HHHHHhccCcccccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeC
Q 006953 153 INEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDV 232 (624)
Q Consensus 153 l~~vlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl 232 (624)
...+.++++++++|+|++||||+|+++|++|+.++++..+.+++++++++.+|.+++.++++|+...+.+++++++|+|+
T Consensus 97 ~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~ 176 (296)
T 1aua_A 97 KPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDL 176 (296)
T ss_dssp HHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEEC
T ss_pred HHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEEC
Confidence 45567889999999999999999999999999998888899999999999999999988889988888889999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcccCccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHhhcCCC
Q 006953 233 QGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAR 312 (624)
Q Consensus 233 ~G~sl~~~~~~~~~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lwkiVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~~ 312 (624)
+|++++|++.. +.+++.++.++|+|||+||+++||||+|++|.++|++|++||+++|++||+|+++++.+.|.++||++
T Consensus 177 ~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~ 255 (296)
T 1aua_A 177 KGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAE 255 (296)
T ss_dssp TTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSS
T ss_pred CCCCHHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHh
Confidence 99999998753 78999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CCccccCCCcCCCC-CCCCccCCCCCCCCHHHHH
Q 006953 313 ELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILK 345 (624)
Q Consensus 313 ~LP~eyGGt~~~~~-~ggcl~~~~gpW~~p~~~k 345 (624)
+||++|||+++|.. +|||+.++.|||++|++++
T Consensus 256 ~LP~~yGG~~~~~~~~~g~~~~~~~~w~~~~~~~ 289 (296)
T 1aua_A 256 NLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYIG 289 (296)
T ss_dssp SSBGGGTSCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred hCcHHhCCCCCCCCCCCCceeCCCCCCCChhhcc
Confidence 99999999999976 6899999999999999875
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.8e-45 Score=398.37 Aligned_cols=248 Identities=30% Similarity=0.470 Sum_probs=219.2
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCC-CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccch
Q 006953 72 SSVSIEDVRDVEELQAVDAFRQSLIMDE-LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (624)
Q Consensus 72 ~s~~ied~~d~eE~~aV~efR~~L~~~~-~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~~~d~i~~d~~~ 150 (624)
||+-..++ +++|+++|++||++|.+++ ++| ..|| .+||||||||+||+++|.+||.++++||++++++.+... ..
T Consensus 1 ~~g~~~~l-~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~ 76 (403)
T 1olm_A 1 MSGRVGDL-SPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QP 76 (403)
T ss_dssp CCSBTTBC-CHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CC
T ss_pred CCCCccCC-CHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-CC
Confidence 34444444 7889999999999998874 465 4566 599999999999999999999999999999999988763 22
Q ss_pred HHHHHHHhccCcccccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEE
Q 006953 151 KEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSIL 230 (624)
Q Consensus 151 ~el~~vlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIi 230 (624)
++ .+.++++++++|+|++||||+|+++|++|+.++++..+.+++++++++.+|.++..+. .++...+.+++++++|+
T Consensus 77 ~~--~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~-~~s~~~g~~v~~~~~I~ 153 (403)
T 1olm_A 77 PE--VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA-HQTTKLGRKVETITIIY 153 (403)
T ss_dssp CH--HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCCCEEEEE
T ss_pred HH--HHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHH-hhHHhhCCcccceEEEE
Confidence 33 2456788889999999999999999999999988888999999999999999998643 34444556789999999
Q ss_pred eCCCCCCCCCChHHHHHHHHHHHHhcccCccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHhhcC
Q 006953 231 DVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIID 310 (624)
Q Consensus 231 Dl~G~sl~~~~~~~~~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lwkiVKpFLdpkT~~KI~~lg~~~~~~L~e~Id 310 (624)
|++|+++++++++.+++++.++.++|+||||||+++||||+|++|.++|++++|||+++|++||+|+++++.+.|.++||
T Consensus 154 D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~ 233 (403)
T 1olm_A 154 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHIS 233 (403)
T ss_dssp ECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSC
T ss_pred ECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcC
Confidence 99999999998888899999999999999999999999999999999999999999999999999999888889999999
Q ss_pred CCCCccccCCCcCCCC
Q 006953 311 ARELPEFLGGTCNCAD 326 (624)
Q Consensus 311 ~~~LP~eyGGt~~~~~ 326 (624)
+++||++|||++++++
T Consensus 234 ~~~LP~~yGG~~~~~~ 249 (403)
T 1olm_A 234 PDQVPVEYGGTMTDPD 249 (403)
T ss_dssp GGGSBGGGTSSBCCTT
T ss_pred hhhCchhhCCCcCCCC
Confidence 9999999999999853
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=1.6e-44 Score=379.62 Aligned_cols=235 Identities=20% Similarity=0.334 Sum_probs=198.7
Q ss_pred cccCCCCHH--HHHHHHHHHHHHHhCCCCC-----------CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Q 006953 75 SIEDVRDVE--ELQAVDAFRQSLIMDELLP-----------ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGV 141 (624)
Q Consensus 75 ~ied~~d~e--E~~aV~efR~~L~~~~~LP-----------~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~~~ 141 (624)
+.+++++.. ..++|++||+||.++|+++ ..+|| .+|+||||||+||+++|++||.+|++||++++.
T Consensus 47 a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~ 125 (316)
T 3hx3_A 47 AKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQYPE 125 (316)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCch
Confidence 345555433 3689999999999999874 34566 599999999999999999999999999999983
Q ss_pred CccccccchHHHHHHHhc-cCcccccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhh
Q 006953 142 DTIMEDFEFKEINEVLSY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAK 220 (624)
Q Consensus 142 d~i~~d~~~~el~~vlk~-~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~ 220 (624)
++.+..++++..+++. ++.+++|+|++||||+|+++|++|+++ .+.+++++++++.+|.++.. ..
T Consensus 126 --~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~----~~~~~~~r~~~~~lE~~l~~--------~~ 191 (316)
T 3hx3_A 126 --LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQE----ITFDEILQAYCFILEKLLEN--------EE 191 (316)
T ss_dssp --GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTT----SCHHHHHHHHHHHHHHHTTS--------HH
T ss_pred --hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCC----CCHHHHHHHHHHHHHHHHhc--------cc
Confidence 4445556666665554 456789999999999999999999987 47899999999999998753 23
Q ss_pred CCCCCeEEEEeCCCCCCCCCChHHHHHHHHHHHHhcccCccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCC
Q 006953 221 RHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNK 300 (624)
Q Consensus 221 ~~i~~~tiIiDl~G~sl~~~~~~~~~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lwkiVKpFLdpkT~~KI~~lg~~ 300 (624)
.+++|+++|+|++|++++|+.......++.++.++|+|||+||+++||||+|++|.++|+++++||+++|++||+|++++
T Consensus 192 ~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~ 271 (316)
T 3hx3_A 192 TQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDD 271 (316)
T ss_dssp HHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETC
T ss_pred CCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCC
Confidence 45789999999999999987554567899999999999999999999999999999999999999999999999999876
Q ss_pred chhHHHhhcCCCCCccccCCCcCCC
Q 006953 301 YQSKLLEIIDARELPEFLGGTCNCA 325 (624)
Q Consensus 301 ~~~~L~e~Id~~~LP~eyGGt~~~~ 325 (624)
+ +.|.++||+++||++|||++++.
T Consensus 272 ~-~~L~~~I~~~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 272 L-SGFYQEIDENILPSDFGGTLPKY 295 (316)
T ss_dssp C-HHHHHHSCGGGSBGGGTSSBCCC
T ss_pred H-HHHHhhCCHhhCcHhhCCCCCCc
Confidence 5 68999999999999999999863
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=2.3e-44 Score=366.22 Aligned_cols=229 Identities=24% Similarity=0.337 Sum_probs=194.1
Q ss_pred CCHHHHHHHHHHHHHHHhCC--CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHH
Q 006953 80 RDVEELQAVDAFRQSLIMDE--LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVL 157 (624)
Q Consensus 80 ~d~eE~~aV~efR~~L~~~~--~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRke~~~d~i~~d~~~~el~~vl 157 (624)
+++.|+++|++||+++.+++ ++|...|| .+|+||||||+||+++|.+||.+|++||++++. +..++.+.++....
T Consensus 4 ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~ 80 (262)
T 1r5l_A 4 MSPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLL 80 (262)
T ss_dssp -----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHH
Confidence 46778899999999998875 45666777 599999999999999999999999999999862 33334444544444
Q ss_pred hc-cCcccccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCC
Q 006953 158 SY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 236 (624)
Q Consensus 158 k~-~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl~G~s 236 (624)
+. +..+++|+|++||||+|+++|++|++. .+.+++++++++.+|.++... ..++.|+++|+|++|++
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~----~~~~~~~r~~~~~~E~~~~~~--------~~~~~g~~~I~D~~g~s 148 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKV----FTAYDVFRVSLITSELIVQEV--------ETQRNGIKAIFDLEGWQ 148 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTT----SCHHHHHHHHHHHHHHHTTSH--------HHHHHCEEEEEECTTCC
T ss_pred HcCCccCCCCcCCCCCEEEEEeccccCccc----CCHHHHHHHHHHHHHHHHhCh--------hhcccceEEEEECCCCC
Confidence 44 456788999999999999999999987 467889999999999876531 22357899999999999
Q ss_pred CCCCChHHHHHHHHHHHHhcccCccccceEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHhhcCCCCCcc
Q 006953 237 LKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPE 316 (624)
Q Consensus 237 l~~~~~~~~~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lwkiVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~~~LP~ 316 (624)
++|++....++++.+++++|+|||++|+++||||+|++|.++|++++|||+++|++||+|+++++.+.|.++|| ++||+
T Consensus 149 ~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 149 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH
Confidence 99886655789999999999999999999999999999999999999999999999999999888899999999 99999
Q ss_pred ccCCCcCC
Q 006953 317 FLGGTCNC 324 (624)
Q Consensus 317 eyGGt~~~ 324 (624)
+|||++..
T Consensus 228 ~yGG~~~~ 235 (262)
T 1r5l_A 228 EYGGEEFS 235 (262)
T ss_dssp GGTCSSCC
T ss_pred hhCCCCCC
Confidence 99999754
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.10 E-value=5.6e-11 Score=121.19 Aligned_cols=135 Identities=13% Similarity=0.149 Sum_probs=109.3
Q ss_pred hccCcccccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCC
Q 006953 158 SYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (624)
Q Consensus 158 k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl~G~sl 237 (624)
+....+..|.|++||||+++...+++... .+++.++.|++..++.... ...++|+|+.|++.
T Consensus 9 ~~~ify~~G~d~dGrpViv~~~~~l~~~~----~D~e~Ll~~vl~tl~~~~~--------------~~y~lV~d~T~~~~ 70 (256)
T 3pg7_A 9 TLSIFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTGP 70 (256)
T ss_dssp HHTSEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCCG
T ss_pred HcCCEEEcCcCCCCCEEEEEEeecCCCCC----CCHHHHHHHHHHHHHHhcC--------------CCeEEEEECCCCCc
Confidence 33444455899999999999999998765 4678787777776665432 47899999999998
Q ss_pred CCCChHHHHHHHHHHHHhcccCccccceEEEEecChHHHHHHHH-HHhcCChhhhccEEEeCCCchhHHHhhcCCCCC
Q 006953 238 KNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT-VKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (624)
Q Consensus 238 ~~~~~~~~~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lwki-VKpFLdpkT~~KI~~lg~~~~~~L~e~Id~~~L 314 (624)
.+.+ ..++++.+..++...|...|+++||+|++++|+..|+. .++|.+.+...|++++++ .++|.++|+.++|
T Consensus 71 ~n~p--~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 71 SNRF--KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp GGCC--CHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred ccCC--cHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 7654 37789999999999999999999999999999977665 455666688889999965 5889999987776
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.83 E-value=1.3e-09 Score=112.93 Aligned_cols=131 Identities=14% Similarity=0.159 Sum_probs=97.2
Q ss_pred cccccCCCCCCcEEEEecCcCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCCC
Q 006953 162 HGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFS 241 (624)
Q Consensus 162 ~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~lk~~v~~lE~~l~~~~pacs~~~~~~i~~~tiIiDl~G~sl~~~~ 241 (624)
.+..|.|++||||+++.+++++... .+++.++-|++..++.... ...++|+|+.|++..+-.
T Consensus 32 f~~~g~d~dG~PViv~~~~~~~~~~----~D~e~Lly~il~tl~~~~~--------------~~y~lV~D~T~~~~~n~p 93 (290)
T 3peg_A 32 FYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTGPSNRF 93 (290)
T ss_dssp EEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCCGGGCC
T ss_pred EEEeccCCCCCEEEEEEeecCCccC----CCHHHHHHHHHHHHHHhcC--------------CCeEEEEEcCCCCccCCC
Confidence 3445899999999999999998765 4677777666666554432 478999999999986544
Q ss_pred hHHHHHHHHHHHHhcccCccccceEEEEecChHHHHHH-HHHHhcCChhhhccEEEeCCCchhHHHhhcCCCCC
Q 006953 242 KNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (624)
Q Consensus 242 ~~~~~llk~i~~ilq~~YPErL~rI~IINaP~~f~~lw-kiVKpFLdpkT~~KI~~lg~~~~~~L~e~Id~~~L 314 (624)
..++++.+..++...|+..|+++||+|++.+|+..+ ...++|...+...|+.+++.. ..|.++++.+++
T Consensus 94 --~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~ 163 (290)
T 3peg_A 94 --KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQ 163 (290)
T ss_dssp --CHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC----------
T ss_pred --hHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHHh
Confidence 378899999999999999999999999999998754 566777888888999998653 458889987754
No 8
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=70.41 E-value=1.2 Score=30.80 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhcCC
Q 006953 547 KRLSELEEKVDTLQAK 562 (624)
Q Consensus 547 ~r~~~lEekv~~L~~K 562 (624)
+||..||+||.+|-.+
T Consensus 1 ~RMnQLEdkVEeLl~~ 16 (34)
T 2hy6_A 1 MKVKQLADAVEELASA 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHh
Confidence 4788899999887543
No 9
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=70.19 E-value=1.2 Score=30.80 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcCC
Q 006953 547 KRLSELEEKVDTLQAK 562 (624)
Q Consensus 547 ~r~~~lEekv~~L~~K 562 (624)
+||..||+||.+|-.+
T Consensus 1 eRMnQLEdKvEeLl~~ 16 (34)
T 2bni_A 1 XRMKQIEDKLEEILSK 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHc
Confidence 5899999999887543
No 10
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=70.16 E-value=5.2 Score=27.42 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcC
Q 006953 548 RLSELEEKVDTLQA 561 (624)
Q Consensus 548 r~~~lEekv~~L~~ 561 (624)
||..||+||.+|-.
T Consensus 1 RMnQLEdKvEeLl~ 14 (33)
T 3c3g_A 1 RMKXIEXKLXEIXS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 68889999988754
No 11
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=68.31 E-value=6 Score=27.32 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 006953 547 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDAL 584 (624)
Q Consensus 547 ~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaL 584 (624)
+||..||+||.+|-.+ |+ -|.+-|.|.++|
T Consensus 1 eRMnQLE~kVEeLl~~-------n~-~Le~eV~rLk~l 30 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXK-------NX-HLEXEVXRLKXL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh-------hh-hHHHHHHHHHHH
Confidence 4889999999887543 32 244455555543
No 12
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=68.01 E-value=5.4 Score=27.58 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhcC
Q 006953 548 RLSELEEKVDTLQA 561 (624)
Q Consensus 548 r~~~lEekv~~L~~ 561 (624)
||..||+||.+|-.
T Consensus 2 RM~QLEdKVEeLl~ 15 (34)
T 1uo4_A 2 RMKQIEDKGEEILS 15 (34)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHH
Confidence 88899999987743
No 13
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=67.87 E-value=7.6 Score=26.62 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcC
Q 006953 548 RLSELEEKVDTLQA 561 (624)
Q Consensus 548 r~~~lEekv~~L~~ 561 (624)
||..||+||.+|-.
T Consensus 1 RMnQLEdKVEell~ 14 (33)
T 2wq1_A 1 RMKQLEDKIEENTS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 68889999987744
No 14
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=67.82 E-value=7.6 Score=26.76 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcC
Q 006953 547 KRLSELEEKVDTLQA 561 (624)
Q Consensus 547 ~r~~~lEekv~~L~~ 561 (624)
+||..||+||.+|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 588999999988753
No 15
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=65.76 E-value=12 Score=32.36 Aligned_cols=68 Identities=18% Similarity=0.372 Sum_probs=49.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHH
Q 006953 537 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLA 607 (624)
Q Consensus 537 ~~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~a 607 (624)
..-..+..+...+.+|+..|+.+..++ .||| |||.--+=.+|++|.| +-..+|++ +-+=.-+++
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~G~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~---Vk~iQ~~l~ 93 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILE 93 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCSCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHH
Confidence 345568899999999999999999874 5674 7899999999999887 54555543 333344555
Q ss_pred HHHH
Q 006953 608 YIDR 611 (624)
Q Consensus 608 yie~ 611 (624)
+||.
T Consensus 94 ~LD~ 97 (99)
T 1m7k_A 94 KLEK 97 (99)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 16
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=64.10 E-value=20 Score=32.85 Aligned_cols=68 Identities=25% Similarity=0.390 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHH
Q 006953 539 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 609 (624)
Q Consensus 539 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~ayi 609 (624)
-..+..+..++++|+.+|+....| +.||| |||.--+=+.|+||.+ +-..+|+ ++-+=.-++++|
T Consensus 33 ~~aI~~V~~eVd~L~~eV~~F~G~----~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~---aVk~VQ~~Le~L 105 (142)
T 3a8y_C 33 HKAVWNVLGNLSEIQGEVLSFDGN----RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQ---AVRLAQNILSYL 105 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSC----TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHH---HHHHHHHHHHHH
Confidence 346788999999999999999777 56774 7999999999999887 4455554 444546677888
Q ss_pred HHHH
Q 006953 610 DRQE 613 (624)
Q Consensus 610 e~~k 613 (624)
|.++
T Consensus 106 D~k~ 109 (142)
T 3a8y_C 106 DLKS 109 (142)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8755
No 17
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=63.23 E-value=7 Score=26.87 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhc
Q 006953 548 RLSELEEKVDTLQ 560 (624)
Q Consensus 548 r~~~lEekv~~L~ 560 (624)
||..||+||++|-
T Consensus 1 RM~QLE~kVEeLl 13 (33)
T 3m48_A 1 RMAQLEAKVEELL 13 (33)
T ss_dssp --CHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 6788999998774
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=59.79 E-value=11 Score=26.26 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhc
Q 006953 547 KRLSELEEKVDTLQ 560 (624)
Q Consensus 547 ~r~~~lEekv~~L~ 560 (624)
+||..||+||.+|-
T Consensus 1 eRMnQLE~kVEeLl 14 (36)
T 1kd8_A 1 XEVKQLEAEVEEIE 14 (36)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 47778888887664
No 19
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=58.97 E-value=29 Score=29.14 Aligned_cols=66 Identities=18% Similarity=0.382 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHH
Q 006953 539 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 609 (624)
Q Consensus 539 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~ayi 609 (624)
-..+..+...+.+|+..|+....| +.||| |||.--+=.+|++|.| +-..+|++ +-+=.-++++|
T Consensus 10 ~~~I~~I~~ev~~L~~~V~~f~g~----~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~---Vk~iQ~~l~~L 82 (87)
T 1m62_A 10 IKKIIHVLEKVQYLEQEVEEFVGK----KTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKL 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC----TTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----cchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHH
Confidence 346788889999999999999987 46674 7899999999999887 55555543 33334456666
Q ss_pred HH
Q 006953 610 DR 611 (624)
Q Consensus 610 e~ 611 (624)
|.
T Consensus 83 D~ 84 (87)
T 1m62_A 83 EK 84 (87)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 20
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=57.95 E-value=46 Score=27.75 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006953 547 KRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 612 (624)
Q Consensus 547 ~r~~~lEekv~~L~~KP~~mP----~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~ 612 (624)
+|-.+|=+.+..|..-=|.+| ..|-.+|..|++=|+.|+.+...-..-...--.+|.+|.+-|+.+
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677778888888877655554 579999999999999999887665554555455666666666543
No 21
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.26 E-value=43 Score=26.51 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006953 79 VRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (624)
Q Consensus 79 ~~d~eE~~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (624)
-++..+.+.|.+|...-. ..|...-..||.+.+||++.|+..+-+
T Consensus 13 ~Ls~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 13 DLTQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp CCCHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hcChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 446777888999998762 123457789999999999999887643
No 22
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=53.63 E-value=24 Score=24.67 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcCC
Q 006953 547 KRLSELEEKVDTLQAK 562 (624)
Q Consensus 547 ~r~~~lEekv~~L~~K 562 (624)
+||..||+||.+|-.+
T Consensus 1 eRMnQLE~KVEeLl~~ 16 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSK 16 (36)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 5788899999887543
No 23
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=52.55 E-value=64 Score=26.27 Aligned_cols=63 Identities=10% Similarity=0.181 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006953 547 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 609 (624)
Q Consensus 547 ~r~~~lEekv~~L~~KP~~mP---~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 609 (624)
+|...|=+.+..|.+=-|..| ..|-.+|..|++=|+.|+.+...-+.-+.+--..+.+|-+-|
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777776543322 489999999999999999887776555544444444444433
No 24
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.63 E-value=21 Score=28.54 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006953 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (624)
Q Consensus 81 d~eE~~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (624)
..+..+++++|++.. |. .|. ..+..-|++++.|++.|++.|.++
T Consensus 15 ~~~~~~~v~~L~~MF------P~-lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 15 RLEFNQAMDDFKTMF------PN-MDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCSHHHHHHHHHHC------SS-SCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 344457788888775 32 344 578899999999999999998765
No 25
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=49.35 E-value=24 Score=24.34 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCC
Q 006953 547 KRLSELEEKVDTLQAK 562 (624)
Q Consensus 547 ~r~~~lEekv~~L~~K 562 (624)
+||..||+||.+|-+|
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 4788999999887654
No 26
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=49.29 E-value=19 Score=27.96 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006953 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (624)
Q Consensus 86 ~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (624)
+.+++|++.. |. .+. ..+-.-|++++.|++.|+.+|.++
T Consensus 11 e~l~~L~emF------P~-ld~-~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 11 EDLKAIQDMF------PN-MDQ-EVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHC------SS-SCH-HHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5667777664 32 344 488999999999999999998754
No 27
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.33 E-value=51 Score=25.57 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006953 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (624)
Q Consensus 81 d~eE~~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (624)
...+.+.|.+|...-. .+ ......||.+.+||++.|+..+-
T Consensus 12 s~~~~e~i~qF~~iTg--------~~-~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 12 SSALKGLIQQFTTITG--------AS-ESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp CHHHHHHHHHHHHHTC--------CC-HHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC--------CC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 5666778888886641 12 34778999999999999987763
No 28
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=42.30 E-value=1.1e+02 Score=23.12 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006953 570 KEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 615 (624)
Q Consensus 570 KEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 615 (624)
.++-+...=.+++.++.++..+|..|..+...+..+.+.|.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556788899999999999999999999999999888654
No 29
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=40.69 E-value=62 Score=28.37 Aligned_cols=68 Identities=18% Similarity=0.403 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHH
Q 006953 539 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 609 (624)
Q Consensus 539 ~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdaLE~e----L~~TKKaL~~al~kQ~El~ayi 609 (624)
-..+..+...+.+|+..|+....++ .||| |||.--+=++|+||.| +-..+|+ ++-+=.-++++|
T Consensus 29 ~~~I~~I~~eV~~L~~qV~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~---aVk~iQ~~l~~L 101 (111)
T 1uk5_A 29 VLKVEAILEKVQGLEQAVDSFEGKK----TDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD---GVRKVQTILEKL 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCS----SSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHH
Confidence 4567888888999999999998876 6774 7899999999999887 4445544 344445567777
Q ss_pred HHHH
Q 006953 610 DRQE 613 (624)
Q Consensus 610 e~~k 613 (624)
|.+.
T Consensus 102 D~k~ 105 (111)
T 1uk5_A 102 EQKA 105 (111)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7654
No 30
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=39.68 E-value=42 Score=28.88 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCchhH-----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHH
Q 006953 540 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAEL----IATKKALHEALMRQEDLLAYID 610 (624)
Q Consensus 540 ~~~~~~~~r~~~lEekv~~L~~KP~~mP~EK-----Ee~L~aa~~RvdaLE~eL----~~TKKaL~~al~kQ~El~ayie 610 (624)
..+..+...+.+|+..|.....|+ .|| +|||.--+=.+|+||.|= -..+|+ ++-+=.-++++||
T Consensus 18 ~kI~~I~~ev~~L~~~V~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~---~Vk~iQ~~l~~LD 90 (99)
T 1ugo_A 18 SRLQEIQREVKAIEPQVVGFSGLS----DDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKR---AAQETERLLKELE 90 (99)
T ss_dssp HHHHHHHHHHHHSHHHHHTCCCCT----TSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHH---HHHHHHHHHHHHH
Confidence 467888889999999999998887 355 488888899999998763 333333 3333345666666
Q ss_pred HH
Q 006953 611 RQ 612 (624)
Q Consensus 611 ~~ 612 (624)
.+
T Consensus 91 ~k 92 (99)
T 1ugo_A 91 QN 92 (99)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 31
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=39.52 E-value=1.9e+02 Score=26.57 Aligned_cols=68 Identities=22% Similarity=0.369 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHH--------HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006953 538 EVDLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 609 (624)
Q Consensus 538 ~~~~~~~~~~r~--------~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 609 (624)
+.+.|..-+++| +.+|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~kakqIe~LIdsL---Pg~~~seeeQ-----~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v 122 (151)
T 1yke_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHV 122 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666 6777777777 3322344444 58999999999999999999999999999988
Q ss_pred HHHH
Q 006953 610 DRQE 613 (624)
Q Consensus 610 e~~k 613 (624)
+..-
T Consensus 123 ~~~l 126 (151)
T 1yke_B 123 DSLI 126 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 32
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.52 E-value=77 Score=25.79 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006953 542 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 604 (624)
Q Consensus 542 ~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~E 604 (624)
.-....|+..+|.++.....+- ...|+-+.+=-.||..||.||+.+.-.|.++..+-++
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666655332 3456667777789999999999999999888777554
No 33
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=38.21 E-value=51 Score=23.47 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 006953 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (624)
Q Consensus 84 E~~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (624)
+.+.|.+|...-. .+ ......||.+.+||++.|+..+-
T Consensus 5 ~~~~i~~F~~iTg--------~~-~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG--------AE-EDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC--------CC-HHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC--------cC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567888876541 12 34788999999999999987763
No 34
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=37.96 E-value=23 Score=33.25 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=43.8
Q ss_pred cccchhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHH-HHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 006953 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAF-RQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (624)
Q Consensus 50 ~~~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~eE~~aV~ef-R~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~ 128 (624)
-..+++.-|+.|| .+..+-.-.++++.++++.+...++ +..+......+ ......-+.+||..++|+.+.+...
T Consensus 85 G~~~I~~eL~~KG----I~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~-~~~~~~K~~~~L~rrGF~~~~I~~v 159 (177)
T 3e3v_A 85 GPKVIKLNLSKKG----IDDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDS-YRNKQNKIKQSLLTKGFSYDIIDTI 159 (177)
T ss_dssp CHHHHHHHHHTTT----CCHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCC-hHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 4456778888888 4544444444554334443433333 33332211111 0111236789999999999988887
Q ss_pred HHHH
Q 006953 129 WAEM 132 (624)
Q Consensus 129 l~~~ 132 (624)
+.+.
T Consensus 160 l~~l 163 (177)
T 3e3v_A 160 IQEL 163 (177)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 7653
No 35
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=37.15 E-value=1.2e+02 Score=30.92 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCCCCch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Q 006953 550 SELEEKVDTLQAKPSEMPY-----EKEELLHAAVCRVDALEAELIATKKALHEALMR-QEDLLAYIDRQEE 614 (624)
Q Consensus 550 ~~lEekv~~L~~KP~~mP~-----EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~k-Q~El~ayie~~k~ 614 (624)
+++++-+..+.-..-.+|. .=.++|..--.|+..|+.+|..+++.|.+-+.+ ...|.++.+....
T Consensus 199 ~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~ 269 (357)
T 3rrk_A 199 EAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKD 269 (357)
T ss_dssp HHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888995 345888999999999999999999999999888 7777777666653
No 36
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=37.02 E-value=2.3e+02 Score=26.27 Aligned_cols=69 Identities=9% Similarity=0.170 Sum_probs=51.2
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006953 534 PSLTEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQE 613 (624)
Q Consensus 534 ~~~~~~~~~~~~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k 613 (624)
+.+.+.+++...+++|++|+..+..+ |..+|+.+.||+.=.++. .+..+...---|..|.+|.+..+
T Consensus 10 ~~i~~~~~~~~alr~ia~l~r~~~~i-----------~~~~n~eI~~ik~~~~~~--~~~l~~~i~~l~~~l~~y~e~~r 76 (171)
T 2p2u_A 10 VIVADIRQAEGALAEIATIDRKVGEI-----------EAQMNEAIDAAKARASQK--SAPLLARRKELEDGVATFATLNK 76 (171)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34577888999999999999999877 456788888888655444 33444555566778889998876
Q ss_pred Hh
Q 006953 614 EA 615 (624)
Q Consensus 614 ~~ 615 (624)
..
T Consensus 77 ~e 78 (171)
T 2p2u_A 77 TE 78 (171)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 37
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=35.43 E-value=89 Score=27.69 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCch--------------hHHHHHHHHHHHHHHHHH----------------HHHHHH
Q 006953 543 SSVTKRLSELEEKVDTLQAKPSEMPY--------------EKEELLHAAVCRVDALEA----------------ELIATK 592 (624)
Q Consensus 543 ~~~~~r~~~lEekv~~L~~KP~~mP~--------------EKEe~L~aa~~RvdaLE~----------------eL~~TK 592 (624)
.+++.+|..||..+..|..+-.++-. +.++|.+.--.|+.-|++ ++...+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 45566666666666666655443332 233444444455555553 577889
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Q 006953 593 KALHEALMRQEDLLAYIDRQEEAK 616 (624)
Q Consensus 593 KaL~~al~kQ~El~ayie~~k~~k 616 (624)
|.|++-+.+|++++.+.|+-|.-+
T Consensus 85 keLd~~ik~qekiIdnFE~ik~lr 108 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKIQALR 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887543
No 38
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=32.63 E-value=98 Score=29.41 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=15.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHH
Q 006953 565 EMPYEKEELLHAAVCRVDALEAELIA 590 (624)
Q Consensus 565 ~mP~EKEe~L~aa~~RvdaLE~eL~~ 590 (624)
++||=.++++..-+.+|+.+++++.+
T Consensus 20 ~L~py~~dlv~~v~~ei~~~~~~~~~ 45 (196)
T 2q9q_C 20 QLPAFNEDGLRQVLEEMKALYEQNQS 45 (196)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666655543
No 39
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=32.53 E-value=66 Score=27.89 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 006953 579 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 618 (624)
Q Consensus 579 ~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 618 (624)
-||-+|.-||--|||.|+.|-.+--|--|-|.++-++.|+
T Consensus 95 iritslqgdltftkkclenarsqisekdakinklmekdfq 134 (142)
T 1pl5_A 95 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 134 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Confidence 4899999999999999999988777766666665555444
No 40
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.16 E-value=1e+02 Score=23.19 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006953 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (624)
Q Consensus 86 ~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (624)
++|++|++. + +.|.+.-++-|++.++|+++|++.|...
T Consensus 11 ~~l~~L~~M----G-----F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSM----G-----FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHH----T-----CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc----C-----CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 445666544 2 3444456899999999999999888654
No 41
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.62 E-value=34 Score=24.76 Aligned_cols=16 Identities=50% Similarity=0.696 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhc
Q 006953 545 VTKRLSELEEKVDTLQ 560 (624)
Q Consensus 545 ~~~r~~~lEekv~~L~ 560 (624)
+=.|.+|||++|.+|+
T Consensus 15 le~~naeLEervstLq 30 (42)
T 2oqq_A 15 LENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555554
No 42
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=30.28 E-value=75 Score=28.18 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 006953 579 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 618 (624)
Q Consensus 579 ~RvdaLE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 618 (624)
-||-+|.-+|--|||.|+.|-.+--|--|-|.++-++.|+
T Consensus 119 iritslqgdltftkkclenarsqisekdakinklmekdfq 158 (166)
T 1nyh_A 119 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 158 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 4899999999999999999988777777777665555544
No 43
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=30.05 E-value=3e+02 Score=24.52 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=50.0
Q ss_pred hhhhHHHHHHHH--------HHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006953 538 EVDLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 609 (624)
Q Consensus 538 ~~~~~~~~~~r~--------~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~ayi 609 (624)
+.+.+..-+++| +.+|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~k~kqIe~LIdsL---P~~~~see~Q-----~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v 122 (132)
T 1ykh_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHV 122 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTTCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666555555 6777777777 3322244443 58999999999999999999999999999988
Q ss_pred HHH
Q 006953 610 DRQ 612 (624)
Q Consensus 610 e~~ 612 (624)
+..
T Consensus 123 ~~~ 125 (132)
T 1ykh_B 123 DSM 125 (132)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 44
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=28.31 E-value=85 Score=21.43 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 006953 109 HMMLRFLKARKFDIDKAKHMW 129 (624)
Q Consensus 109 ~~LLRFLrArkfDvekA~k~l 129 (624)
....+.|+++++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 356889999999999998754
No 45
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=28.01 E-value=1.2e+02 Score=23.37 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=21.2
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006953 106 DDYHMMLRFLKARKFDIDKAKHMWAE 131 (624)
Q Consensus 106 dD~~~LLRFLrArkfDvekA~k~l~~ 131 (624)
.|.+..++-|++.++|+++|++.|..
T Consensus 30 ~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 30 FDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34446689999999999999988764
No 46
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=27.51 E-value=1.3e+02 Score=21.92 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 006953 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (624)
Q Consensus 84 E~~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~ 128 (624)
..+.|.+|...-. .+|...-..||.+.+||++.|+..
T Consensus 5 ~de~ia~F~~iTG--------~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTG--------IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHC--------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 3467888887541 345345688999999999999753
No 47
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=27.20 E-value=79 Score=27.01 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006953 552 LEEKVDTLQAKPSEM--PYEKEELLHAAVCRVDALEAELIATKKALHEA 598 (624)
Q Consensus 552 lEekv~~L~~KP~~m--P~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~a 598 (624)
|+.+..+....|. | |.--|..|+.+-.+|+.|++||-+=...|.++
T Consensus 41 l~Km~~vY~~nP~-~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 41 LKKMKDVYEKTPQ-MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHCGG-GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666 6 77779999999999999999999988888776
No 48
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=26.33 E-value=99 Score=25.70 Aligned_cols=41 Identities=24% Similarity=0.351 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006953 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (624)
Q Consensus 85 ~~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (624)
...++++|..|- +...| ..|.+-.-..+||+++|+..+.+-
T Consensus 35 ~SCLd~iR~VlG------dsV~e-~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLG------DAVPD-DILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTT------TTSCH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------ccCCH-HHHHHHHHHhcCCHHHHHHHHHhc
Confidence 345788888873 23345 478889999999999999988653
No 49
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.63 E-value=1.2e+02 Score=24.66 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006953 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (624)
Q Consensus 86 ~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (624)
++|++|++. + +.|.+..++-|++.++|+++|++.|..
T Consensus 31 ~qi~qL~eM----G-----F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 31 QELEELKAL----G-----FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHH----T-----CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHc----C-----CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 456666654 2 234346789999999999999988753
No 50
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=25.62 E-value=41 Score=30.97 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=41.8
Q ss_pred cccchhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 006953 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (624)
Q Consensus 50 ~~~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~eE~~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l 129 (624)
-..++++.|+.|| .+..+-.-.++++.+++...+...++..+.. ..+.......-+.+||..++|+.+.+...+
T Consensus 83 G~~~I~~eL~~KG----I~~~~I~~al~~~~~de~e~a~~l~~Kk~~~--~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l 156 (162)
T 3dfg_A 83 GPLHIRAELGTHG----LDSDAVSAAMATFEGDWTENALDLIRRRFGE--DGPVDLAQRRKAADLLARRGFDGNSIRLAT 156 (162)
T ss_dssp CHHHHHHHHHHTT----CCHHHHHHHHTTCCSCHHHHHHHHHHHHHCT--TCCCSHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCcHhHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3457888898888 5555444444554332322333333333321 112111222468899999999998877665
Q ss_pred H
Q 006953 130 A 130 (624)
Q Consensus 130 ~ 130 (624)
.
T Consensus 157 ~ 157 (162)
T 3dfg_A 157 R 157 (162)
T ss_dssp T
T ss_pred h
Confidence 4
No 51
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.30 E-value=1.4e+02 Score=23.72 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=30.2
Q ss_pred CCCCHHH--HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006953 78 DVRDVEE--LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (624)
Q Consensus 78 d~~d~eE--~~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (624)
+...+++ ..+|++|++. + +.|.+.-++-|++.+.|+++|++.|..
T Consensus 11 ~~~~pe~~y~~ql~qL~~M----G-----F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 11 SLQAPEVRFSKEMECLQAM----G-----FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp SSCCHHHHTHHHHHHHHHH----T-----CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHc----C-----CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3334444 3456666654 2 244445689999999999999988764
No 52
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=24.95 E-value=49 Score=23.79 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006953 575 HAAVCRVDALEAELIATKKA 594 (624)
Q Consensus 575 ~aa~~RvdaLE~eL~~TKKa 594 (624)
.+|++|.+.+|+++-.+||.
T Consensus 20 d~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 20 ENALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhhcc
Confidence 37899999999999998873
No 53
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.35 E-value=1.3e+02 Score=25.60 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006953 545 VTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 604 (624)
Q Consensus 545 ~~~r~~~lEekv~~L~~KP~~mP~EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~E 604 (624)
.+.|...+|.++..+..+- ..+|+=+.+=-.|+..||.||+.+...|.++..+-++
T Consensus 21 a~drae~~e~~~k~~e~~~----~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERS----KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666654442 2466667766789999999999999888888766544
No 54
>3hf0_A GCN4-PLI SIDE chain sequence on AN (alpha-alpha- beta-alpha-beta-alpha-beta) backbone...; helix bundle, foldamer, alpha/beta-peptide, coiled coil; HET: BIL XCP B3Y XPC 16A; 2.10A {Synthetic}
Probab=24.33 E-value=1.4e+02 Score=19.87 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006953 570 KEELLHAAVCRVDALEAELIATKKALHE 597 (624)
Q Consensus 570 KEe~L~aa~~RvdaLE~eL~~TKKaL~~ 597 (624)
.|.-|.+.+....-.|.||...|..|.+
T Consensus 6 ~e~kl~e~l~kl~h~e~el~r~k~ll~e 33 (34)
T 3hf0_A 6 XEXKLXEXLXKLXHXEXELXRXKXLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4566788888999999999999988865
No 55
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=23.49 E-value=40 Score=32.75 Aligned_cols=73 Identities=5% Similarity=-0.015 Sum_probs=41.6
Q ss_pred cccchhhhhhcccCCCCCCCccccccccCCCCHHHHHHH-HHHHHHHHhCCCCCCCCCc---HHHHHHHHHHcCCCHHHH
Q 006953 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAV-DAFRQSLIMDELLPERHDD---YHMMLRFLKARKFDIDKA 125 (624)
Q Consensus 50 ~~~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~eE~~aV-~efR~~L~~~~~LP~~~dD---~~~LLRFLrArkfDvekA 125 (624)
-..+++..|+.|| .+..+-.-.++++.++++.+.+ ...+..+..... .++ ..-+.+||..++|+.+.+
T Consensus 128 G~~~I~~eL~~KG----I~~~~I~~al~~~~~~~e~e~a~~l~~Kk~~~~~~----~~~~~~k~K~~~~L~rrGFs~~~I 199 (221)
T 3d5l_A 128 GPGIIRQHLRQKG----IGESDIDDALTQFTPEVQAELAKKLALKLFRRYRN----QPERRREQKVQQGLTTKGFSSSVY 199 (221)
T ss_dssp CHHHHHHHHHHTT----CCHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccC----CChHHHHHHHHHHHHhCCCCHHHH
Confidence 3456778888888 4444433344555333444333 333333322111 222 357899999999999988
Q ss_pred HHHHH
Q 006953 126 KHMWA 130 (624)
Q Consensus 126 ~k~l~ 130 (624)
...+.
T Consensus 200 ~~vl~ 204 (221)
T 3d5l_A 200 EMIKD 204 (221)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66553
No 56
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.99 E-value=1.8e+02 Score=23.40 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 006953 79 VRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (624)
Q Consensus 79 ~~d~eE~~aV~efR~~L~~~~~LP~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (624)
+..++-...|.+++..+ |+ ..+ -++.+.|..++.|+|.++..|-+
T Consensus 8 ~~~~~l~s~I~qV~DLf------Pd-LG~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 8 MCGVELDSLISQVKDLL------PD-LGE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CSSHHHHHHHHHHHHHC------CS-SCH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHc------cc-CCH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 34556667888888776 43 344 38999999999999999988864
No 57
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.80 E-value=1.1e+02 Score=24.69 Aligned_cols=47 Identities=11% Similarity=0.233 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006953 547 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKK 593 (624)
Q Consensus 547 ~r~~~lEekv~~L~~KP~~mP---~EKEe~L~aa~~RvdaLE~eL~~TKK 593 (624)
+|...|=+.+..|.+--|.+| ..|-.+|..|+.=|+.|+.++..-+.
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655433332 47999999999999999988765443
No 58
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=21.71 E-value=1.1e+02 Score=23.68 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCch----hHHHHHHHHHHHHHHHHHHHH
Q 006953 547 KRLSELEEKVDTLQAKPSEMPY----EKEELLHAAVCRVDALEAELI 589 (624)
Q Consensus 547 ~r~~~lEekv~~L~~KP~~mP~----EKEe~L~aa~~RvdaLE~eL~ 589 (624)
+|+.+|-+-++.|..--|.+|. -|=+.|..|+.=|..|+.-|.
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999888777774 588999999999999987664
No 59
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=20.94 E-value=1.3e+02 Score=25.80 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchh----HHHHHHHHHHHHHHHHHHHHH
Q 006953 546 TKRLSELEEKVDTLQAKPSEMPYE----KEELLHAAVCRVDALEAELIA 590 (624)
Q Consensus 546 ~~r~~~lEekv~~L~~KP~~mP~E----KEe~L~aa~~RvdaLE~eL~~ 590 (624)
..||..|-+-++.|...-+.+|++ |=|.|..|++-|..|..-|..
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999888888887 789999999999999887754
No 60
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.39 E-value=1.6e+02 Score=21.30 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006953 569 EKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLA 607 (624)
Q Consensus 569 EKEe~L~aa~~RvdaLE~eL~~TKKaL~~al~kQ~El~a 607 (624)
-|||||+. ++||| .|.++|.+=+.+-=.||.||-+
T Consensus 3 tk~~l~qk-I~kVd---rEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 3 SKEELIQN-MDRVD---REITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SSSHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 46777763 55555 7888888888888788887755
Done!