Query 006954
Match_columns 624
No_of_seqs 354 out of 1497
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 16:51:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 2.6E-42 5.6E-47 392.9 26.7 509 2-616 45-569 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 4.7E-27 1E-31 215.0 11.9 106 177-284 4-110 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 7.8E-27 1.7E-31 210.3 12.2 104 177-280 2-106 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 1.1E-26 2.4E-31 209.0 11.3 101 179-279 5-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 3.2E-26 7E-31 202.5 10.2 95 180-276 2-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 4.7E-26 1E-30 201.7 10.2 99 179-277 1-99 (99)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 9.1E-26 2E-30 199.5 10.2 96 180-277 2-97 (97)
8 cd05498 Bromo_Brdt_II_like Bro 99.9 1E-25 2.2E-30 200.6 10.0 99 179-277 1-102 (102)
9 cd05507 Bromo_brd8_like Bromod 99.9 2.4E-25 5.2E-30 199.3 11.2 101 177-279 2-102 (104)
10 cd05504 Bromo_Acf1_like Bromod 99.9 2.6E-25 5.6E-30 202.6 11.5 102 177-280 11-112 (115)
11 cd05499 Bromo_BDF1_2_II Bromod 99.9 2.3E-25 5E-30 198.5 10.3 98 180-277 2-102 (102)
12 cd05500 Bromo_BDF1_2_I Bromodo 99.9 3.3E-25 7.2E-30 198.0 11.3 100 177-276 3-102 (103)
13 cd05501 Bromo_SP100C_like Brom 99.9 7.5E-25 1.6E-29 195.0 11.9 97 179-280 3-99 (102)
14 cd05502 Bromo_tif1_like Bromod 99.9 1.4E-24 3E-29 195.8 12.3 101 177-280 3-106 (109)
15 cd05509 Bromo_gcn5_like Bromod 99.9 1E-24 2.2E-29 193.9 10.3 99 179-279 2-100 (101)
16 cd05510 Bromo_SPT7_like Bromod 99.9 1.3E-24 2.9E-29 196.9 11.2 102 177-280 6-109 (112)
17 cd05508 Bromo_RACK7 Bromodomai 99.9 1.6E-24 3.5E-29 192.3 10.7 97 177-276 2-98 (99)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 4.2E-24 9.1E-29 192.3 9.6 99 179-279 2-106 (107)
19 cd05513 Bromo_brd7_like Bromod 99.9 5.8E-24 1.3E-28 188.5 9.8 93 179-273 2-94 (98)
20 cd05512 Bromo_brd1_like Bromod 99.9 1.2E-23 2.5E-28 186.6 9.8 92 179-272 2-93 (98)
21 cd05528 Bromo_AAA Bromodomain; 99.9 1.6E-23 3.4E-28 190.0 10.8 101 178-280 3-107 (112)
22 cd05511 Bromo_TFIID Bromodomai 99.9 1.5E-23 3.3E-28 190.1 10.7 101 182-284 4-104 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 4.2E-23 9.1E-28 184.4 9.4 96 180-277 2-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 6.5E-23 1.4E-27 183.9 9.6 97 180-278 2-104 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 9.6E-23 2.1E-27 185.2 10.3 100 179-280 3-108 (113)
26 cd05529 Bromo_WDR9_I_like Brom 99.9 4.3E-22 9.3E-27 184.7 12.5 104 174-278 20-126 (128)
27 smart00297 BROMO bromo domain. 99.9 5.1E-22 1.1E-26 176.9 11.0 101 177-279 6-106 (107)
28 cd05525 Bromo_ASH1 Bromodomain 99.9 5.6E-22 1.2E-26 178.2 10.2 96 179-276 3-104 (106)
29 cd05520 Bromo_polybromo_III Br 99.9 4.8E-22 1E-26 177.8 9.5 91 184-276 6-102 (103)
30 cd05517 Bromo_polybromo_II Bro 99.9 5E-22 1.1E-26 177.6 9.4 94 180-275 2-101 (103)
31 cd05518 Bromo_polybromo_IV Bro 99.9 5.9E-22 1.3E-26 177.2 9.3 94 181-276 3-102 (103)
32 cd04369 Bromodomain Bromodomai 99.8 9.7E-21 2.1E-25 163.8 9.3 96 180-277 2-99 (99)
33 PF00439 Bromodomain: Bromodom 99.8 8.8E-21 1.9E-25 161.8 8.8 84 183-268 1-84 (84)
34 cd05522 Bromo_Rsc1_2_II Bromod 99.8 1.1E-20 2.3E-25 169.4 9.6 93 182-276 5-103 (104)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 1.9E-20 4E-25 168.4 10.2 96 179-278 2-103 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 6.2E-20 1.3E-24 165.5 11.3 98 184-281 6-107 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.7 3.6E-17 7.8E-22 147.5 10.0 100 178-281 3-108 (110)
38 COG5076 Transcription factor i 99.7 8.8E-17 1.9E-21 173.7 9.6 104 177-282 141-250 (371)
39 KOG1245 Chromatin remodeling c 99.7 9.8E-17 2.1E-21 194.6 7.6 95 183-280 1306-1400(1404)
40 KOG1472 Histone acetyltransfer 99.4 1.7E-13 3.7E-18 155.6 6.7 101 178-280 606-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.3 9.8E-13 2.1E-17 119.9 4.5 81 178-258 3-90 (114)
42 cd05491 Bromo_TBP7_like Bromod 98.9 1.2E-09 2.6E-14 99.5 5.8 42 218-259 62-103 (119)
43 KOG0955 PHD finger protein BR1 98.9 1.3E-09 2.9E-14 129.0 7.1 102 177-280 564-665 (1051)
44 KOG0386 Chromatin remodeling c 98.8 4.9E-09 1.1E-13 121.6 7.2 100 181-282 1027-1132(1157)
45 KOG0008 Transcription initiati 98.7 1.1E-08 2.4E-13 121.1 6.4 94 184-279 1388-1481(1563)
46 KOG1827 Chromatin remodeling c 98.7 1.6E-08 3.6E-13 114.0 7.3 99 177-277 51-155 (629)
47 KOG1474 Transcription initiati 98.5 1.6E-08 3.5E-13 116.6 0.7 92 189-280 3-94 (640)
48 KOG0008 Transcription initiati 98.5 1.4E-07 2.9E-12 112.2 7.6 102 180-283 1263-1364(1563)
49 KOG1472 Histone acetyltransfer 98.4 2.6E-07 5.6E-12 106.0 4.9 68 192-261 300-367 (720)
50 KOG1828 IRF-2-binding protein 97.9 2.4E-06 5.2E-11 91.1 -0.2 92 183-276 24-115 (418)
51 KOG1828 IRF-2-binding protein 97.8 1.4E-05 3.1E-10 85.3 3.1 83 186-271 216-298 (418)
52 COG5076 Transcription factor i 96.6 0.00068 1.5E-08 73.9 0.8 93 186-280 271-363 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 95.0 0.031 6.8E-07 52.4 4.6 65 220-287 59-123 (131)
54 PF05110 AF-4: AF-4 proto-onco 92.1 0.21 4.6E-06 61.8 5.8 18 79-96 45-65 (1191)
55 KOG0644 Uncharacterized conser 88.7 0.43 9.3E-06 56.3 4.1 59 217-275 1050-1108(1113)
56 KOG0732 AAA+-type ATPase conta 84.1 0.54 1.2E-05 57.3 1.9 64 196-259 533-601 (1080)
57 PHA03308 transcriptional regul 83.4 0.72 1.6E-05 53.5 2.4 16 217-232 966-981 (1463)
58 KOG2140 Uncharacterized conser 79.7 2.1 4.6E-05 48.6 4.3 16 28-43 2-17 (739)
59 KOG2140 Uncharacterized conser 71.3 4.2 9.2E-05 46.3 3.9 16 472-487 676-691 (739)
60 PHA03308 transcriptional regul 69.1 3.2 6.9E-05 48.5 2.4 11 381-391 1193-1203(1463)
61 KOG2130 Phosphatidylserine-spe 68.9 3.8 8.2E-05 43.9 2.8 16 234-249 157-172 (407)
62 PF07218 RAP1: Rhoptry-associa 67.1 19 0.00042 41.3 7.9 19 597-615 247-265 (782)
63 COG4290 Guanyl-specific ribonu 58.7 5.7 0.00012 37.5 1.7 31 7-37 100-136 (152)
64 PF05501 DUF755: Domain of unk 46.8 15 0.00032 34.4 2.3 6 355-360 54-59 (123)
65 KOG0644 Uncharacterized conser 43.0 13 0.00028 44.6 1.6 60 202-263 89-178 (1113)
66 PF14372 DUF4413: Domain of un 39.7 79 0.0017 28.2 5.8 49 232-280 3-51 (101)
67 PRK11546 zraP zinc resistance 37.9 1.1E+02 0.0023 29.5 6.7 60 550-609 35-103 (143)
68 PF05110 AF-4: AF-4 proto-onco 37.8 73 0.0016 40.4 7.0 60 444-505 415-474 (1191)
69 PF11596 DUF3246: Protein of u 37.5 21 0.00046 36.6 2.0 16 465-480 226-241 (241)
70 KOG2130 Phosphatidylserine-spe 36.5 24 0.00051 38.1 2.2 11 79-89 18-28 (407)
71 KOG1827 Chromatin remodeling c 36.2 5.6 0.00012 46.4 -2.6 74 197-272 214-287 (629)
72 PF07218 RAP1: Rhoptry-associa 35.6 96 0.0021 36.0 6.8 25 375-399 39-63 (782)
73 KOG2357 Uncharacterized conser 27.6 85 0.0018 35.1 4.7 52 556-610 371-429 (440)
74 TIGR02606 antidote_CC2985 puta 25.1 1E+02 0.0022 25.7 3.8 26 224-249 12-37 (69)
75 PF03223 V-ATPase_C: V-ATPase 22.6 12 0.00026 41.3 -2.9 60 564-623 222-285 (371)
76 KOG2236 Uncharacterized conser 21.0 1.1E+02 0.0024 34.6 4.1 8 432-439 87-94 (483)
77 PF11458 Mistic: Membrane-inte 20.5 3.3E+02 0.0071 23.6 5.8 58 332-400 3-60 (84)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=2.6e-42 Score=392.92 Aligned_cols=509 Identities=26% Similarity=0.354 Sum_probs=317.1
Q ss_pred CCCCCCCCCCcccccccccCCC-CCCCCCCCc-ccccccccCCCCcccccccccCCCCCCCCCcceeeecCCCCCHHHHH
Q 006954 2 MGKNDRFSGGYYRSNAFETTGE-SEGSGSSGR-IDAEITASEDSSAPTRKCINLNPDKWDAFGVPLQVLSLPNLSRSERK 79 (624)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~rk~~~~n~~~~~~f~v~~~~~~ls~~s~~er~ 79 (624)
.+ +.-|+++++. .+|++++. ++.++.++. |..--.+++....++.+|+...-..-..+.++..++++..++..|++
T Consensus 45 e~-n~~~~~~~~~-~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 122 (640)
T KOG1474|consen 45 EN-NYYFSASECI-ADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDKSSVGPKASKIPLDKDSSSQVR 122 (640)
T ss_pred cc-CccccHhhhh-hhccccccchhcccCCccchhhccccchhhcccccccccccccCCcccccccccCcCCCCchhhhh
Confidence 44 6778888777 89999996 555555554 54444588888899999998887777779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCcccCC---CcccccCCCCCCCCCccccccccccccC-CCCC-CCCCCCCCCCC
Q 006954 80 DLVHKLTSDLEQIRILQKKAGVQRTNGVTVSS---SSDILSCSNGPNRPKVQNSRKSLVMTCG-PGKK-VNPVSNNSRGW 154 (624)
Q Consensus 80 ~L~~rl~~Ele~vR~l~~kie~~~~~~~~~s~---~~~~~s~~~~~~~~~~~~~~~s~~~~s~-~~kk-~~~~~~~~~g~ 154 (624)
+|..||+.+|++||.+.++++.... ....++ ........++. .. ........ ..+. +.++.+...+.
T Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~----~~d~~~~~~~~~~~~~~~~~~~~~~ 194 (640)
T KOG1474|consen 123 KLSERLKQELQQVRPLTKAVEFSPE-PSVVSPVSPASQPFKSKNGV---KK----VADTCVKSYKSKSEREPSPGQKREG 194 (640)
T ss_pred hhhhccccccccCCccccccccccc-ccccCCCCCcccccccccch---hh----hhccccccccccCcCCCCccccccc
Confidence 9999999999999999999972211 111111 11100000000 00 00000000 0000 00000000000
Q ss_pred CCCCCCCCC---CCC-CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHH
Q 006954 155 NRGTSGRFE---SAG-KPTSTTGTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKM 230 (624)
Q Consensus 155 ~r~~~gr~~---~~~-~~~~~~~~~~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL 230 (624)
.-...+... ... ............++++|..||..||+|+++|+|+.|||++.+++||||.||+|||||+|||+||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL 274 (640)
T KOG1474|consen 195 TVAPNSSRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKL 274 (640)
T ss_pred cccCccccccccccccccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhh
Confidence 000000000 000 1111234456899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCcchhhhhhhcCCc
Q 006954 231 ASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLPVTKPQSLPEKSAPRANVETAKAIPP 310 (624)
Q Consensus 231 ~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~ie~~~P~~~~~~~~~~~~~~~~~~~~~~~pp 310 (624)
.++.|.++.+|++||||||.||++||++||+||.||..|+.+|+.+|+.+..++............... .........
T Consensus 275 ~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 352 (640)
T KOG1474|consen 275 EKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMAS--SDQIPSNSV 352 (640)
T ss_pred cccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc--ccccccccc
Confidence 999999999999999999999999999999999999999999999999874433211100000000000 000000111
Q ss_pred chhhhhhcccccCCcCCCCCCCCHHHHHHHHHHHhhcCCcChHHHHHHHHhhcCCCCCCCCCeEEEeCCCCCHHHHHHHH
Q 006954 311 AKRKKIEIMCQEIVPTAVKPVMTDQEKHNLGRELESLLAEMPVHIIDFLREHSSNGRETGEDEIEIDIDDLSNDTLLTLR 390 (624)
Q Consensus 311 ~KkrK~~~~~~~~~~ep~~r~MT~eEK~~L~~~I~~Lp~E~l~~IV~II~k~~p~l~~~~~dEIEIDIdsL~~eTL~eL~ 390 (624)
...+...........++....|+.+|+..+...+..++.+...+++..++............++++++..+.+. |.+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~ 430 (640)
T KOG1474|consen 353 EGPRSSSFESRESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTG--KLIK 430 (640)
T ss_pred cCcccccchhcccccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchh--hhhh
Confidence 11112211122223344567899999999999999999999999999999766555444446666666666555 3322
Q ss_pred --HHHHHHHHHHhhhccCCCchhhhhhhcccCCCCccccCCCCCCCCcccCCCCCCCCCCCCCCcccccccccCCCCCCC
Q 006954 391 --KLLDDYLEEKQKNQANVEPCEIELLNESGLSNSSMQQGKGNDLPDEDIDIGGNEPPVSSYPPMEIEKDTAIKSSKRVS 468 (624)
Q Consensus 391 --~yV~~~L~~k~k~~~k~e~~E~e~~~~sg~~ns~~~~~k~~e~~dEdvdIgg~~~p~~~~~pv~iekd~~~~sss~ss 468 (624)
...........+..+..+. ..+.+..+++ .+|...-..++|.+-
T Consensus 431 ~~~~~~~~~~~~~r~~t~~~~---------------------~~l~~~~~~~---~~p~~l~~~~~~~~~---------- 476 (640)
T KOG1474|consen 431 EKNKKEKAANENKRDMTAPEK---------------------AKLKELLQNL---LPPNKLESIVEILKP---------- 476 (640)
T ss_pred hhhcccccccccccccccccc---------------------ccchhhccCC---CCCccccCcccccch----------
Confidence 1111112222222222221 1223333332 122211112222200
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCccCCCCcccCCCCccccccCCCCCCCcccccccccccccccCCCCCCcc-cccc
Q 006954 469 PGSSSGSESSSSSDSESDDVKASSPVSASKVPKVSGHKDKLDEKTGSGDPLDVNQSVSGLDQLEHTSQQKPSSVE-SDFR 547 (624)
Q Consensus 469 ssSSSsS~S~SSs~S~Sd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 547 (624)
......|.+.....+.+-..++ +++.
T Consensus 477 -----------------------------------------------------~~~~~~l~~~~~~~~~~~~~vd~~~~~ 503 (640)
T KOG1474|consen 477 -----------------------------------------------------EKRQLDLSQNDDEIELDLDSVDGSQSR 503 (640)
T ss_pred -----------------------------------------------------hhhcccccccccchhhccccccccccc
Confidence 0011122222222222333322 2333
Q ss_pred cCCCCCCCCCCCChhHHHHHHHhhhhhHHHHHHhhh-ccccc-CCCCChHHHHHHHHHHHHHHhhccccee
Q 006954 548 QDGESAPNERQVSPDKLYRATLLKNRFADTILKAKE-KTLSQ-GDKGDPEKLRREREELELQKRKGLTFTI 616 (624)
Q Consensus 548 ~~~~~~~~~~~~~~~k~~raa~l~~r~ad~i~ka~~-~~~~~-~~~~dp~~~~~~~~e~e~~~~~~~~~~~ 616 (624)
.++ .-+...+++|++..|.++|++-+.+|++ +.+-+ ....+|+++.+.+++.+.+.+.++++..
T Consensus 504 ~~~-----~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (640)
T KOG1474|consen 504 EPS-----SNPLEIETIRETLKLSTERELELSKASSSRSLMRNRSGSLPERLSRSISEEKLREKSEKSSSE 569 (640)
T ss_pred CCC-----cccchhhhhhccccchhhHHHHHHHHhhhhhhccCcccccccchhhhhhHHhhhhhhHhhhhh
Confidence 333 5567799999999999999999999999 77666 4556999999999999999988887643
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4.7e-27 Score=215.04 Aligned_cols=106 Identities=37% Similarity=0.604 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
..|.++|..||+.|++|+.+++|..|||+. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~--~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLL--KYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChh--hcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 579999999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHhhC
Q 006954 257 PP-GNDFHIMADTLRKFFEARWKAIEKKL 284 (624)
Q Consensus 257 ~~-~S~V~~~A~~L~~~Fe~~~k~ie~~~ 284 (624)
++ ++.||.+|..|++.|+++|+.|...+
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 99999999999999999999986543
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=7.8e-27 Score=210.31 Aligned_cols=104 Identities=31% Similarity=0.539 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhccc
Q 006954 177 VILMKQCETLLKRLMSH-QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~-~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (624)
.++++.|..+|.+|+++ +.+|+|..|||+...++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999 99999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 256 NPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 256 N~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
|+++|.+|.+|..|++.|++.++.+
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.1e-26 Score=209.02 Aligned_cols=101 Identities=43% Similarity=0.771 Sum_probs=95.7
Q ss_pred HHHHH-HHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCC
Q 006954 179 LMKQC-ETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (624)
Q Consensus 179 ~~k~c-~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 257 (624)
.++.| ..||..|++|+.+|+|..|||+.+.++||||++|++||||+||++||.++.|.++.+|.+||+|||.||++||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 44444 68899999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 006954 258 PGNDFHIMADTLRKFFEARWKA 279 (624)
Q Consensus 258 ~~S~V~~~A~~L~~~Fe~~~k~ 279 (624)
++|.||.+|..|++.|++++++
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998875
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.2e-26 Score=202.51 Aligned_cols=95 Identities=31% Similarity=0.578 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCC
Q 006954 180 MKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (624)
Q Consensus 180 ~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~ 259 (624)
+++|.+||+.|++++.+|+|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+++
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChh--hcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999965 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 006954 260 NDFHIMADTLRKFFEAR 276 (624)
Q Consensus 260 S~V~~~A~~L~~~Fe~~ 276 (624)
+.||.+|..|++.|.++
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.7e-26 Score=201.66 Aligned_cols=99 Identities=66% Similarity=1.204 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCC
Q 006954 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (624)
Q Consensus 179 ~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 258 (624)
+++.|..||+.|++++.+++|..||++....+|+||.+|++||||+||++||.++.|.++.+|..||+|||.||++||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 37899999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 006954 259 GNDFHIMADTLRKFFEARW 277 (624)
Q Consensus 259 ~S~V~~~A~~L~~~Fe~~~ 277 (624)
+|.+|.+|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=9.1e-26 Score=199.54 Aligned_cols=96 Identities=43% Similarity=0.799 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCC
Q 006954 180 MKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (624)
Q Consensus 180 ~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~ 259 (624)
+..|..||..|++|+.+++|..||++. .+|+||.+|++||||+||++||.+|.|.++.+|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTK--LVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 006954 260 NDFHIMADTLRKFFEARW 277 (624)
Q Consensus 260 S~V~~~A~~L~~~Fe~~~ 277 (624)
+.+|.+|..|++.|+.+|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 8
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1e-25 Score=200.63 Aligned_cols=99 Identities=48% Similarity=0.882 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcC---CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhccc
Q 006954 179 LMKQCETLLKRLMSH---QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (624)
Q Consensus 179 ~~k~c~~iL~~L~~~---~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (624)
+++.|.+||+.|+++ +.+++|..||++....+|+||++|++||||+||++||.+|.|.++.+|..||+|||.||+.|
T Consensus 1 ~~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 80 (102)
T cd05498 1 QLKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKY 80 (102)
T ss_pred ChhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999 88999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 006954 256 NPPGNDFHIMADTLRKFFEARW 277 (624)
Q Consensus 256 N~~~S~V~~~A~~L~~~Fe~~~ 277 (624)
|+++|.++.+|..|++.|+++|
T Consensus 81 n~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 81 NPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987
No 9
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.4e-25 Score=199.32 Aligned_cols=101 Identities=31% Similarity=0.460 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
..|.+.|..|+..|++|+.+++|..||++. .+|+||++|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 468999999999999999999999999964 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 006954 257 PPGNDFHIMADTLRKFFEARWKA 279 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~~k~ 279 (624)
+++|.||.+|..|++.|...+..
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999887654
No 10
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.6e-25 Score=202.56 Aligned_cols=102 Identities=39% Similarity=0.728 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
...+..|..||..|++++.+++|..||++. .+||||++|++||||+||++||..|.|.++.+|..||+|||.||++||
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~~--~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN 88 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYN 88 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 567899999999999999999999999954 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 257 PPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
+++|.+|.+|..|+++|++.|+.+
T Consensus 89 ~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 89 PEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999886
No 11
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.3e-25 Score=198.53 Aligned_cols=98 Identities=48% Similarity=0.925 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 180 MKQCETLLKRLMSH---QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 180 ~k~c~~iL~~L~~~---~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
++.|.+||..|+++ +.+++|..|||+.+..+|+||++|++||||++|++||+++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999995 579999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 006954 257 PPGNDFHIMADTLRKFFEARW 277 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~~ 277 (624)
+++|.+|.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999886
No 12
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.3e-25 Score=197.96 Aligned_cols=100 Identities=40% Similarity=0.555 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
..+.+.|.+||..|++++.+++|..|||+.+.++|+||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 3 ~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFN 82 (103)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 56789999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 006954 257 PPGNDFHIMADTLRKFFEAR 276 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~ 276 (624)
+++|.++.+|..|++.|++.
T Consensus 83 ~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 83 GPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 13
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=7.5e-25 Score=194.95 Aligned_cols=97 Identities=30% Similarity=0.446 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCC
Q 006954 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (624)
Q Consensus 179 ~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 258 (624)
.++.|+.||..|++++.+++|..+ |. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 467799999999999999999664 33 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 006954 259 GNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 259 ~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
+ .++.+|..|++.|+++|+.+
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999875
No 14
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.4e-24 Score=195.85 Aligned_cols=101 Identities=41% Similarity=0.721 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHHhhhhc
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMAS---NAYSSPLEFLADVRLTFSNAM 253 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~---~~Y~S~~eF~~DvrLIF~NA~ 253 (624)
...++.|.+||..|++|+.+++|..||++ .+|+||++|++||||+||++||+. +.|.++.+|..||+|||.||+
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~ 79 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999996 699999999999999999999999 599999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 254 TYNPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 254 ~YN~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
.||+++|.++.+|..|++.|++.|+.+
T Consensus 80 ~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 80 KFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876
No 15
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1e-24 Score=193.87 Aligned_cols=99 Identities=39% Similarity=0.708 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCC
Q 006954 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (624)
Q Consensus 179 ~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 258 (624)
+..+|..||..|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|..||+|||.||++||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKE--EAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChh--hcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999976 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 006954 259 GNDFHIMADTLRKFFEARWKA 279 (624)
Q Consensus 259 ~S~V~~~A~~L~~~Fe~~~k~ 279 (624)
+|.+|.+|..|++.|++.+++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998875
No 16
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.3e-24 Score=196.95 Aligned_cols=102 Identities=31% Similarity=0.466 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhccc
Q 006954 177 VILMKQCETLLKRLMSH-QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~-~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (624)
.++...|..||..|++| +.+++|..||++. .+||||.+|++||||+||++||.++.|.++.+|.+||+|||.||+.|
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~y 83 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKR--EAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChh--hcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999 8999999999965 89999999999999999999999999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHH
Q 006954 256 NPPGN-DFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 256 N~~~S-~V~~~A~~L~~~Fe~~~k~i 280 (624)
|++++ .++.+|..|++.|+..++.|
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 99765 67899999999999988875
No 17
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.6e-24 Score=192.35 Aligned_cols=97 Identities=30% Similarity=0.434 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
.++...+..++..|+ |+.+|+|..||++. .+||||.+|++||||+||++||.+|.|.++++|.+||+|||.||++||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLE--QFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChh--hCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 356677888899999 99999999999975 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 006954 257 PPGNDFHIMADTLRKFFEAR 276 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~ 276 (624)
+++|.++.+|..|.+.|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998754
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=4.2e-24 Score=192.27 Aligned_cols=99 Identities=26% Similarity=0.412 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhh
Q 006954 179 LMKQCETLLKRLMSHQY------GWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (624)
Q Consensus 179 ~~k~c~~iL~~L~~~~~------a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (624)
+.++|..||+.|+++.. +++|..||+. ..+||||.+|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~--~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSR--KELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCc--ccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999876 8999999774 489999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHH
Q 006954 253 MTYNPPGNDFHIMADTLRKFFEARWKA 279 (624)
Q Consensus 253 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~ 279 (624)
++||+++|.||.+|..|+++|++.++.
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998864
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.8e-24 Score=188.47 Aligned_cols=93 Identities=40% Similarity=0.534 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCC
Q 006954 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (624)
Q Consensus 179 ~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 258 (624)
+...|..||+.|+.++.+++|..||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDF--IAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCcc--ccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5678999999999999999999999964 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 006954 259 GNDFHIMADTLRKFF 273 (624)
Q Consensus 259 ~S~V~~~A~~L~~~F 273 (624)
+|.+|.+|..|...-
T Consensus 80 ~s~~~~~A~~L~~~~ 94 (98)
T cd05513 80 DTIYYKAAKKLLHSG 94 (98)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999997653
No 20
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.2e-23 Score=186.56 Aligned_cols=92 Identities=34% Similarity=0.535 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCC
Q 006954 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (624)
Q Consensus 179 ~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 258 (624)
+...|+.+|.+|+.|+.+++|..|||+. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4567899999999999999999999965 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006954 259 GNDFHIMADTLRKF 272 (624)
Q Consensus 259 ~S~V~~~A~~L~~~ 272 (624)
++.+|.+|..|++.
T Consensus 80 ~s~~~~~A~~l~~~ 93 (98)
T cd05512 80 DTIFYRAAVRLRDQ 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 21
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.90 E-value=1.6e-23 Score=190.02 Aligned_cols=101 Identities=38% Similarity=0.523 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCC
Q 006954 178 ILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (624)
Q Consensus 178 ~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 257 (624)
++...|..|+++|+.|+.+++|..||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||+
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 56778999999999999999999999976 7999999999999999999999999999999999999999999999999
Q ss_pred C----CCHHHHHHHHHHHHHHHHHHHH
Q 006954 258 P----GNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 258 ~----~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
+ |+.++.+|..|++.|..++..+
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 9 4799999999999999988764
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.5e-23 Score=190.07 Aligned_cols=101 Identities=35% Similarity=0.614 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCH
Q 006954 182 QCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGND 261 (624)
Q Consensus 182 ~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~ 261 (624)
.+..|+.+|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||+++|.
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKK--KVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChh--hcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4678999999999999999999976 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q 006954 262 FHIMADTLRKFFEARWKAIEKKL 284 (624)
Q Consensus 262 V~~~A~~L~~~Fe~~~k~ie~~~ 284 (624)
++.+|..|...|+..+.++++++
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~~ 104 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEKL 104 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999886654
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.2e-23 Score=184.41 Aligned_cols=96 Identities=31% Similarity=0.475 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhc
Q 006954 180 MKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAM 253 (624)
Q Consensus 180 ~k~c~~iL~~L~~~------~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~ 253 (624)
.+.|.+|+..|+++ +.+++|..|++ +..+|+||++|++||||+||++||+.|.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~--~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPS--KKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCC--CCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999955 56899999977 55899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHH
Q 006954 254 TYNPPGNDFHIMADTLRKFFEARW 277 (624)
Q Consensus 254 ~YN~~~S~V~~~A~~L~~~Fe~~~ 277 (624)
+||+++|.+|.+|..|++.|+.+|
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=6.5e-23 Score=183.92 Aligned_cols=97 Identities=29% Similarity=0.448 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhc
Q 006954 180 MKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAM 253 (624)
Q Consensus 180 ~k~c~~iL~~L~~~------~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~ 253 (624)
+++|..|+..|..+ +.+++|..||+ +..+||||.+|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~--~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPS--KSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCC--cccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999886 45899999976 45899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHH
Q 006954 254 TYNPPGNDFHIMADTLRKFFEARWK 278 (624)
Q Consensus 254 ~YN~~~S~V~~~A~~L~~~Fe~~~k 278 (624)
+||+++|.+|.+|..|+++|.+..+
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999987653
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=9.6e-23 Score=185.17 Aligned_cols=100 Identities=23% Similarity=0.402 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhh
Q 006954 179 LMKQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (624)
Q Consensus 179 ~~k~c~~iL~~L~~~~------~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (624)
..++|.+|+..|+++. .+.+|..+++ +..+|+||++|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~--~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPK--RRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCC--cccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999753 4578998855 6799999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 253 MTYNPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 253 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
++||+++|.+|.+|..|+++|++.++++
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 108 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEV 108 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998876
No 26
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=4.3e-22 Score=184.67 Aligned_cols=104 Identities=27% Similarity=0.368 Sum_probs=98.1
Q ss_pred CCcHHHHHHHHHHHHHHH---cCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 006954 174 TGNVILMKQCETLLKRLM---SHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFS 250 (624)
Q Consensus 174 ~~~~~~~k~c~~iL~~L~---~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~ 250 (624)
.....+...|..+|.+|+ .++.+++|..||++.. .+|+||++|++||||+||++||.++.|.++++|..||+|||.
T Consensus 20 ~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~ 98 (128)
T cd05529 20 HIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILS 98 (128)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 346788999999999999 8999999999999654 799999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 006954 251 NAMTYNPPGNDFHIMADTLRKFFEARWK 278 (624)
Q Consensus 251 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k 278 (624)
||++||+++|.++.+|..|++.|...+.
T Consensus 99 Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 99 NAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998765
No 27
>smart00297 BROMO bromo domain.
Probab=99.87 E-value=5.1e-22 Score=176.90 Aligned_cols=101 Identities=47% Similarity=0.732 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
..+...|..|+..+.+|+.+++|..||++. .+|+||.+|++||||++|++||++|.|.++.+|..||++||.||+.||
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~--~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n 83 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRK--EAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChh--hccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 567888999999999999999999999865 699999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 006954 257 PPGNDFHIMADTLRKFFEARWKA 279 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~~k~ 279 (624)
++++.+|.+|..|...|+..|++
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 28
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=5.6e-22 Score=178.18 Aligned_cols=96 Identities=24% Similarity=0.356 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhh
Q 006954 179 LMKQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (624)
Q Consensus 179 ~~k~c~~iL~~L~~~~------~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (624)
+.+.|..|+..|..++ .+++|..+++ +..+||||++|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~--k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPS--KKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCC--cccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 5567888888888864 4799999955 6799999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHH
Q 006954 253 MTYNPPGNDFHIMADTLRKFFEAR 276 (624)
Q Consensus 253 ~~YN~~~S~V~~~A~~L~~~Fe~~ 276 (624)
++||+++|.+|.+|..|++.|+..
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999863
No 29
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=4.8e-22 Score=177.75 Aligned_cols=91 Identities=30% Similarity=0.451 Sum_probs=82.5
Q ss_pred HHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCC
Q 006954 184 ETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (624)
Q Consensus 184 ~~iL~~L~~~------~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 257 (624)
..|+..|+.+ +.+++|..||+ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||++||+
T Consensus 6 ~~l~~~i~~~~~~~g~~~s~pF~~~p~--~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 6 WQLYDTIRNARNNQGQLLAEPFLKLPS--KRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred HHHHHHHHhhcCCCCCCccHhhhcCCC--cccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4555555554 47899999977 558999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 006954 258 PGNDFHIMADTLRKFFEAR 276 (624)
Q Consensus 258 ~~S~V~~~A~~L~~~Fe~~ 276 (624)
++|.+|.+|..|+++|+++
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 30
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=5e-22 Score=177.64 Aligned_cols=94 Identities=33% Similarity=0.535 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCC------CCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhc
Q 006954 180 MKQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAM 253 (624)
Q Consensus 180 ~k~c~~iL~~L~~~~------~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~ 253 (624)
.+.|.+|+..|+.+. .+++|..+++ +..+||||++|++||||+||++||..+.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~--~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPS--KVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCC--CCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 467999999999874 4799999966 56999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH
Q 006954 254 TYNPPGNDFHIMADTLRKFFEA 275 (624)
Q Consensus 254 ~YN~~~S~V~~~A~~L~~~Fe~ 275 (624)
+||+++|.+|.+|..|+++|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=5.9e-22 Score=177.22 Aligned_cols=94 Identities=29% Similarity=0.490 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcc
Q 006954 181 KQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254 (624)
Q Consensus 181 k~c~~iL~~L~~~------~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 254 (624)
++|..|+..|..+ ..+.+|..+|+ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~--~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPS--KKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCC--cccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566777776664 56889999976 558999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 006954 255 YNPPGNDFHIMADTLRKFFEAR 276 (624)
Q Consensus 255 YN~~~S~V~~~A~~L~~~Fe~~ 276 (624)
||+++|.||.+|..|+++|+++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999763
No 32
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.83 E-value=9.7e-21 Score=163.80 Aligned_cols=96 Identities=46% Similarity=0.645 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCC
Q 006954 180 MKQCETLLKRLMSH--QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (624)
Q Consensus 180 ~k~c~~iL~~L~~~--~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 257 (624)
...|..++..|+.+ +.+++|..||++. .+|+||.+|++||||++|++||.+|.|.++.+|..||+|||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~--~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPK--EAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChh--cCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46799999999999 9999999999864 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 006954 258 PGNDFHIMADTLRKFFEARW 277 (624)
Q Consensus 258 ~~S~V~~~A~~L~~~Fe~~~ 277 (624)
.++.++.+|..|...|++.|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
No 33
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.83 E-value=8.8e-21 Score=161.79 Aligned_cols=84 Identities=46% Similarity=0.781 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCHH
Q 006954 183 CETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDF 262 (624)
Q Consensus 183 c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V 262 (624)
|..||..|++|+.+++|..||++. .+|+|+.+|++||||.+|++||.+|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~--~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPK--EYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTT--TSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChh--hCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 899999999999999999998754 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 006954 263 HIMADT 268 (624)
Q Consensus 263 ~~~A~~ 268 (624)
|.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 34
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.1e-20 Score=169.40 Aligned_cols=93 Identities=29% Similarity=0.357 Sum_probs=82.8
Q ss_pred HHHHHHHHHHc------CCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhccc
Q 006954 182 QCETLLKRLMS------HQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (624)
Q Consensus 182 ~c~~iL~~L~~------~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (624)
++..|+..|.+ ++.+++|..+++. ..+|+||++|++||||+||++||.++.|.++.+|..||+|||.||+.|
T Consensus 5 ~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~--~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 5 RIKNILKGLRKERDENGRLLTLHFEKLPDK--AREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHHHHHhCcCCCcccHHHhcCCCc--cccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34445555544 4679999999774 489999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 006954 256 NPPGNDFHIMADTLRKFFEAR 276 (624)
Q Consensus 256 N~~~S~V~~~A~~L~~~Fe~~ 276 (624)
|++++.+|.+|..|++.|+..
T Consensus 83 n~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 83 NENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999863
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.9e-20 Score=168.36 Aligned_cols=96 Identities=28% Similarity=0.433 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhh
Q 006954 179 LMKQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (624)
Q Consensus 179 ~~k~c~~iL~~L~~~~------~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (624)
+.++|..|+..|+... .+.+|..+++ +..+||||++|++||||+||++||.+ |.++.+|..||.|||.||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~--~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPL--RKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCc--cccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 4678999999999864 3568987754 66899999999999999999999998 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHH
Q 006954 253 MTYNPPGNDFHIMADTLRKFFEARWK 278 (624)
Q Consensus 253 ~~YN~~~S~V~~~A~~L~~~Fe~~~k 278 (624)
++||++++.+|.+|..|+++|..++.
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988753
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=6.2e-20 Score=165.51 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=87.9
Q ss_pred HHHHHHHHc-CCCCCCCCCCcc---ccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCC
Q 006954 184 ETLLKRLMS-HQYGWVFNTPVD---VVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (624)
Q Consensus 184 ~~iL~~L~~-~~~a~~F~~PVD---p~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~ 259 (624)
..++..+.. .+..++|..||. +.+.++|+||.+|++||||+||++||.+|.|+++.+|.+||.|||+||+.||+++
T Consensus 6 ~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~ 85 (109)
T cd05492 6 KFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGAD 85 (109)
T ss_pred HHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 445566666 566899999997 4445699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 006954 260 NDFHIMADTLRKFFEARWKAIE 281 (624)
Q Consensus 260 S~V~~~A~~L~~~Fe~~~k~ie 281 (624)
|.+|.+|..|.......+.+|.
T Consensus 86 s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 86 SEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988888774
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.71 E-value=3.6e-17 Score=147.50 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 006954 178 ILMKQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSN 251 (624)
Q Consensus 178 ~~~k~c~~iL~~L~~~~------~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~N 251 (624)
.+.+.+..|+..+++|. .+.+|.+.+. ..|+||.+|+.||||++|++||.+|.|.++++|..||.|||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~----~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE----LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC----cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 35677889999999984 4788888743 4688899999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006954 252 AMTYNPPGNDFHIMADTLRKFFEARWKAIE 281 (624)
Q Consensus 252 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~ie 281 (624)
|++||.+||.+|.+|..|+.+|.....++.
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998877763
No 38
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.67 E-value=8.8e-17 Score=173.66 Aligned_cols=104 Identities=32% Similarity=0.460 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 006954 177 VILMKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFS 250 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~------~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~ 250 (624)
..+.+.|..++..+... ...++|..+|+ +..+|+||.||+.||||++|+++|..+.|.++.+|..|+.|||.
T Consensus 141 ~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~--k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~ 218 (371)
T COG5076 141 ELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPS--KREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFD 218 (371)
T ss_pred hhHHHHHHHHHHHHHHhhcccccccccccccCCc--cccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 44455555555555442 56888988855 77999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 006954 251 NAMTYNPPGNDFHIMADTLRKFFEARWKAIEK 282 (624)
Q Consensus 251 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~ie~ 282 (624)
||.+||.++|.||.+|..|++.|...+..+..
T Consensus 219 N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~ 250 (371)
T COG5076 219 NCKLYNGPDSSVYVDAKELEKYFLKLIEEIPE 250 (371)
T ss_pred hhhhccCCCcchhhhhHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999997744
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.65 E-value=9.8e-17 Score=194.59 Aligned_cols=95 Identities=43% Similarity=0.864 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCHH
Q 006954 183 CETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDF 262 (624)
Q Consensus 183 c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V 262 (624)
|..||..|+.|..+|||+.||++. .+|+||.||++||||.||+.|+..|.|.++.+|..||.|||.||.+||.. +.|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~--~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPK--EVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChh--hcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 899999999999999999999966 89999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006954 263 HIMADTLRKFFEARWKAI 280 (624)
Q Consensus 263 ~~~A~~L~~~Fe~~~k~i 280 (624)
+..+..|.++|...|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999988764
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.41 E-value=1.7e-13 Score=155.65 Aligned_cols=101 Identities=34% Similarity=0.643 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCC
Q 006954 178 ILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (624)
Q Consensus 178 ~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 257 (624)
.+......+|..|.+|..+|+|.+||+.. ++||||.+|++||||.||+.+|..+.|..+..|++|+.+||.||+.||+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~--e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKK--EVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccc--cCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 45667889999999999999999999955 9999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 006954 258 PGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 258 ~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
.++..|+.|..|...|...++..
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred ccchheecccchhhhhcchhhhh
Confidence 99999999999999998887764
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.32 E-value=9.8e-13 Score=119.94 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcC-------CCCCHHHHHHHHHHHhh
Q 006954 178 ILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASN-------AYSSPLEFLADVRLTFS 250 (624)
Q Consensus 178 ~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~-------~Y~S~~eF~~DvrLIF~ 250 (624)
+.+..|..+|..++.++.+|+|..|||+.+.++||||++|++||||+||+++|..+ .|..-..+..++..++.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 45778888999999999999999999998789999999999999999999999997 34444466667777777
Q ss_pred hhcccCCC
Q 006954 251 NAMTYNPP 258 (624)
Q Consensus 251 NA~~YN~~ 258 (624)
||..||..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 77776654
No 42
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.93 E-value=1.2e-09 Score=99.53 Aligned_cols=42 Identities=29% Similarity=0.452 Sum_probs=39.9
Q ss_pred cCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCC
Q 006954 218 KHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (624)
Q Consensus 218 k~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~ 259 (624)
-+||||+||++||.+|.|.++.+|++||+|||.||++||.++
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 468999999999999999999999999999999999999873
No 43
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.92 E-value=1.3e-09 Score=128.96 Aligned_cols=102 Identities=33% Similarity=0.467 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
.+..+.++.+|..|.......+|..|||+. .+|||+++|++||||.|++.++..+.|.++++|.+|+.||..||+.||
T Consensus 564 ~p~~kLl~~~l~~lq~kD~~gif~~pvd~~--e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn 641 (1051)
T KOG0955|consen 564 NPFKKLLQKSLDKLQKKDSYGIFAEPVDPS--ELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYN 641 (1051)
T ss_pred chHHHHHHHHHHHhhcccccCceeeccChh--hcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhh
Confidence 456777888999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 257 PPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
..+..+|.+|..+++.....+...
T Consensus 642 ~~dtv~~r~av~~~e~~~~~~~~a 665 (1051)
T KOG0955|consen 642 AKDTVYYRAAVRLRELIKKDFRNA 665 (1051)
T ss_pred ccCeehHhhhHHHHhhhhhHHHhc
Confidence 999999999999999888776654
No 44
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.82 E-value=4.9e-09 Score=121.62 Aligned_cols=100 Identities=31% Similarity=0.435 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcc
Q 006954 181 KQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254 (624)
Q Consensus 181 k~c~~iL~~L~~~------~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 254 (624)
+.|..|+....++ ..+..|... |++..+||||.||+.||++..|+++|.++.|.+..+...||.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~--~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKL--PSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccC--cccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 7788888888865 447889887 66889999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 006954 255 YNPPGNDFHIMADTLRKFFEARWKAIEK 282 (624)
Q Consensus 255 YN~~~S~V~~~A~~L~~~Fe~~~k~ie~ 282 (624)
||..||.||..|..|+.+|......|..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999999888753
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.73 E-value=1.1e-08 Score=121.07 Aligned_cols=94 Identities=30% Similarity=0.551 Sum_probs=81.0
Q ss_pred HHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCHHH
Q 006954 184 ETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFH 263 (624)
Q Consensus 184 ~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V~ 263 (624)
..|+.+++..+.+|+|++||+.. .+|+||.+|++||||.+|.+++..+.|.+..+|.+||++|+.||..||+..+.+.
T Consensus 1388 d~~vs~~~~ipes~~f~~~v~~k--~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~ 1465 (1563)
T KOG0008|consen 1388 DNIVSQMKEIPESWPFHEPVNKK--RVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYT 1465 (1563)
T ss_pred hhHHHHHHhcchhcccccccchh--hchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcccccc
Confidence 34556666668899999999965 7999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHH
Q 006954 264 IMADTLRKFFEARWKA 279 (624)
Q Consensus 264 ~~A~~L~~~Fe~~~k~ 279 (624)
..|..+-.+....+.+
T Consensus 1466 ~k~~k~~ev~~~~~~e 1481 (1563)
T KOG0008|consen 1466 KKARKIGEVGLANLLE 1481 (1563)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777766665544433
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.73 E-value=1.6e-08 Score=113.99 Aligned_cols=99 Identities=26% Similarity=0.355 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHcC------CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 006954 177 VILMKQCETLLKRLMSH------QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFS 250 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~------~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~ 250 (624)
..++.+...+|..+..+ .....|.+. |.+...|+||.+|..||.|..|++|+..+.|.+...|..|+.|||.
T Consensus 51 ~~~~~~f~~il~~~~~~~d~~gk~~~d~fekl--p~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 51 PPLIPKFKTILASLLDLKDDEGKQLFDKFEKL--PSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTE 128 (629)
T ss_pred hHHHHHHHHHHHHHHhhccccCcccchhHhhc--cccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 45666777777777776 346778887 4477999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHH
Q 006954 251 NAMTYNPPGNDFHIMADTLRKFFEARW 277 (624)
Q Consensus 251 NA~~YN~~~S~V~~~A~~L~~~Fe~~~ 277 (624)
||+.||.+++.+|.++..|+..|...-
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 999999999999999999999998754
No 47
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.55 E-value=1.6e-08 Score=116.63 Aligned_cols=92 Identities=39% Similarity=0.741 Sum_probs=86.3
Q ss_pred HHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCHHHHHHHH
Q 006954 189 RLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADT 268 (624)
Q Consensus 189 ~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V~~~A~~ 268 (624)
.+.+|.++|+|..||+.+.+.+|+||.+|++|||++||++++.++.|.+..+-.+|+.-+|.||..||.++.+|+.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006954 269 LRKFFEARWKAI 280 (624)
Q Consensus 269 L~~~Fe~~~k~i 280 (624)
++..|......+
T Consensus 83 ~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 83 LEKLFPKKLRSM 94 (640)
T ss_pred chhhcccccccc
Confidence 999997666544
No 48
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.53 E-value=1.4e-07 Score=112.16 Aligned_cols=102 Identities=28% Similarity=0.434 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCC
Q 006954 180 MKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPG 259 (624)
Q Consensus 180 ~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~ 259 (624)
.-.+..|.+.+...++..+|..||+.. .++|||.||+.||||.++|+.+....|.+-++|..|+.|||.|..+||++.
T Consensus 1263 ss~l~~i~n~~~~~~~t~~f~~Pv~~k--~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~ 1340 (1563)
T KOG0008|consen 1263 SSILETIINQARSSPNTYPFPTPVNAK--EVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPL 1340 (1563)
T ss_pred ccchHHHHHHHhcCCCCcCCCCccchh--hccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCch
Confidence 344677888899999999999999954 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhh
Q 006954 260 NDFHIMADTLRKFFEARWKAIEKK 283 (624)
Q Consensus 260 S~V~~~A~~L~~~Fe~~~k~ie~~ 283 (624)
+.+...+..+....-..|.+-+.+
T Consensus 1341 ~~~t~~~q~mls~~~~~~~ekedk 1364 (1563)
T KOG0008|consen 1341 ASLTRQQQSMLSLCFEKLKEKEDK 1364 (1563)
T ss_pred HHHHHHHHHHHHHHHHhhchhHHH
Confidence 999999998888877777654443
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.38 E-value=2.6e-07 Score=106.01 Aligned_cols=68 Identities=34% Similarity=0.521 Sum_probs=63.4
Q ss_pred cCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCH
Q 006954 192 SHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGND 261 (624)
Q Consensus 192 ~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~ 261 (624)
.+.++++|.+||+.. ..|+||.||+-||||.|+.+++..+.|.+..+|+.|+.+||.||.+||..-+.
T Consensus 300 ~~~~s~~~~~kvs~~--~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~ 367 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKE--DAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESH 367 (720)
T ss_pred ccccccccccCCChh--hCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccch
Confidence 488999999999955 89999999999999999999999999999999999999999999999986443
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.89 E-value=2.4e-06 Score=91.11 Aligned_cols=92 Identities=26% Similarity=0.233 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCHH
Q 006954 183 CETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDF 262 (624)
Q Consensus 183 c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V 262 (624)
...++.++.+...-..|.-||.+. ..|+|.+||+.|||+.|++.+++.+.|.+..+|..|.+||..||..||..++.+
T Consensus 24 ~ehhlrkl~sKdp~q~fafplt~~--map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~ 101 (418)
T KOG1828|consen 24 AEHHLRKLPSKDPKQKFAFPLTDK--MAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVP 101 (418)
T ss_pred HHHHHHhccccChhhhhccccchh--hccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccc
Confidence 456666676766677788888765 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 006954 263 HIMADTLRKFFEAR 276 (624)
Q Consensus 263 ~~~A~~L~~~Fe~~ 276 (624)
+..|..|..+-...
T Consensus 102 ~~aaKrL~~v~~~~ 115 (418)
T KOG1828|consen 102 IVAAKRLCPVRLGM 115 (418)
T ss_pred cccccccchhhcch
Confidence 99999888765443
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.76 E-value=1.4e-05 Score=85.34 Aligned_cols=83 Identities=22% Similarity=0.183 Sum_probs=73.8
Q ss_pred HHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCHHHHH
Q 006954 186 LLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIM 265 (624)
Q Consensus 186 iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V~~~ 265 (624)
...+|.......+|+.++-.. .+|.|..+|++|+|++|++.+..++.|.| .+|..|+.||+.||++||.+...+|..
T Consensus 216 q~~kl~~~~p~~~lnyg~tas--~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyel 292 (418)
T KOG1828|consen 216 QEDKLNRVDPVAYLNYGPTAS--FAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYEL 292 (418)
T ss_pred HHHHhcccCchhhhcccchhh--hcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHH
Confidence 345555566788899997644 89999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHH
Q 006954 266 ADTLRK 271 (624)
Q Consensus 266 A~~L~~ 271 (624)
|..+.-
T Consensus 293 ank~lh 298 (418)
T KOG1828|consen 293 ANKQLH 298 (418)
T ss_pred HHhhhh
Confidence 987765
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.59 E-value=0.00068 Score=73.85 Aligned_cols=93 Identities=32% Similarity=0.549 Sum_probs=83.0
Q ss_pred HHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCHHHHH
Q 006954 186 LLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIM 265 (624)
Q Consensus 186 iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V~~~ 265 (624)
++.....+..+|+|..++.. ...|+|+++|..+|++.+.+.++..+.|....+|..|..++|.||..||+....++..
T Consensus 271 ~i~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (371)
T COG5076 271 LITNSQAHVGAWPFLRPVSD--EEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKN 348 (371)
T ss_pred cccccccccccccccccCCc--ccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhh
Confidence 33444667889999999774 4899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 006954 266 ADTLRKFFEARWKAI 280 (624)
Q Consensus 266 A~~L~~~Fe~~~k~i 280 (624)
+..+..+|...+..+
T Consensus 349 ~~~~~~~~~~~~~~~ 363 (371)
T COG5076 349 ANVLEDFVIKKTRLI 363 (371)
T ss_pred ccchhhhHhhhhhhh
Confidence 999999988766543
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.02 E-value=0.031 Score=52.43 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 006954 220 PMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLPVT 287 (624)
Q Consensus 220 PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~ie~~~P~~ 287 (624)
|.||.-|++||..|.|+++.+|..||-.|+.-++.=.+....+-+....+.-+|.+.+. .-+|..
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me---~vf~Wf 123 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLME---SVFPWF 123 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHH---Hhcccc
Confidence 89999999999999999999999999999987776555444444444444455544444 445544
No 54
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=92.05 E-value=0.21 Score=61.78 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=11.0
Q ss_pred HHHHHHHHHHH---HHHHHHH
Q 006954 79 KDLVHKLTSDL---EQIRILQ 96 (624)
Q Consensus 79 ~~L~~rl~~El---e~vR~l~ 96 (624)
-+|=.|+.+.| |.|-.|.
T Consensus 45 DeLssriQ~mLGnYeemk~~~ 65 (1191)
T PF05110_consen 45 DELSSRIQNMLGNYEEMKELL 65 (1191)
T ss_pred HHHHHHHHHHhcCHHHHhccc
Confidence 35666666655 6666555
No 55
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=88.67 E-value=0.43 Score=56.27 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=51.9
Q ss_pred ccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHHHH
Q 006954 217 IKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEA 275 (624)
Q Consensus 217 Ik~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V~~~A~~L~~~Fe~ 275 (624)
-.-|..|..|+.+|++++|++.+.|..||..|..||.+|-+-+.-+...+..|...|..
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 34578999999999999999999999999999999999999888777777777776654
No 56
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=84.10 E-value=0.54 Score=57.31 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=56.1
Q ss_pred CCCCCCCcccccc---CCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHH--HHHHHhhhhcccCCCC
Q 006954 196 GWVFNTPVDVVKM---NIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLA--DVRLTFSNAMTYNPPG 259 (624)
Q Consensus 196 a~~F~~PVDp~~~---~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~--DvrLIF~NA~~YN~~~ 259 (624)
...|..|+.+... .+++|..+|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 6678888764322 15699999999999999999999999999999999 9999999999999975
No 57
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=83.38 E-value=0.72 Score=53.51 Aligned_cols=16 Identities=13% Similarity=0.538 Sum_probs=9.6
Q ss_pred ccCCCCHHHHHHHHhc
Q 006954 217 IKHPMDFGTIKEKMAS 232 (624)
Q Consensus 217 Ik~PMDL~tIkkKL~~ 232 (624)
-..|+.|+...+|+.-
T Consensus 966 a~dpv~l~ef~kr~sp 981 (1463)
T PHA03308 966 ARDPVALGEFCKRISP 981 (1463)
T ss_pred ccCchHHHHHHhhcCc
Confidence 4556666666666543
No 58
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=79.70 E-value=2.1 Score=48.59 Aligned_cols=16 Identities=31% Similarity=0.210 Sum_probs=8.4
Q ss_pred CCCCcccccccccCCC
Q 006954 28 GSSGRIDAEITASEDS 43 (624)
Q Consensus 28 ~~~~~~~~~~~~~~~~ 43 (624)
||+..-|+|-+.+|+.
T Consensus 2 ~ssv~~dkps~~~d~r 17 (739)
T KOG2140|consen 2 ESSVQPDKPSTSSDKR 17 (739)
T ss_pred CcccCCCCCCCchhhh
Confidence 3455556555555543
No 59
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=71.31 E-value=4.2 Score=46.28 Aligned_cols=16 Identities=50% Similarity=0.507 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCccc
Q 006954 472 SSGSESSSSSDSESDD 487 (624)
Q Consensus 472 SSsS~S~SSs~S~Sd~ 487 (624)
+|.|+||+|++|.+|+
T Consensus 676 es~s~s~~s~ssSsd~ 691 (739)
T KOG2140|consen 676 ESESDSGDSSSSSSDS 691 (739)
T ss_pred ccCCCCCCcccccchh
Confidence 3445555555544443
No 60
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=69.15 E-value=3.2 Score=48.47 Aligned_cols=11 Identities=45% Similarity=0.519 Sum_probs=5.8
Q ss_pred CCHHHHHHHHH
Q 006954 381 LSNDTLLTLRK 391 (624)
Q Consensus 381 L~~eTL~eL~~ 391 (624)
|..-||+.|+.
T Consensus 1193 lthvtlrrlrd 1203 (1463)
T PHA03308 1193 LTHVTLRRLRD 1203 (1463)
T ss_pred hhhhhHHHHHH
Confidence 44555555544
No 61
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=68.93 E-value=3.8 Score=43.89 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=7.9
Q ss_pred CCCCHHHHHHHHHHHh
Q 006954 234 AYSSPLEFLADVRLTF 249 (624)
Q Consensus 234 ~Y~S~~eF~~DvrLIF 249 (624)
.|.-+.=|..|+-.+.
T Consensus 157 dY~VPk~F~dDlF~y~ 172 (407)
T KOG2130|consen 157 DYSVPKYFRDDLFQYL 172 (407)
T ss_pred hcCcchhhhHHHHHhc
Confidence 4555555555553333
No 62
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=67.06 E-value=19 Score=41.30 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhcccce
Q 006954 597 LRREREELELQKRKGLTFT 615 (624)
Q Consensus 597 ~~~~~~e~e~~~~~~~~~~ 615 (624)
|-.|.+|.|..+|||+..+
T Consensus 247 ~dee~k~i~~~rkeerlk~ 265 (782)
T PF07218_consen 247 LDEEHKEIEEKRKEERLKM 265 (782)
T ss_pred HhHHHHHHHHHHHHHHHHh
Confidence 4456778887777776544
No 63
>COG4290 Guanyl-specific ribonuclease Sa [Nucleotide transport and metabolism]
Probab=58.73 E-value=5.7 Score=37.50 Aligned_cols=31 Identities=39% Similarity=0.595 Sum_probs=21.8
Q ss_pred CCCCCcccccccccCCCCCC------CCCCCcccccc
Q 006954 7 RFSGGYYRSNAFETTGESEG------SGSSGRIDAEI 37 (624)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 37 (624)
+-+.||||-+.|||+|++.- +|..-+.|+|+
T Consensus 100 ar~~gYYREYTVeTpG~sdRGarRIV~GGd~~t~~e~ 136 (152)
T COG4290 100 ARSRGYYREYTVETPGLSDRGARRIVTGGDPPTDPEV 136 (152)
T ss_pred ccccCcceeeEeeCCCcccCCceeEeeCCCCCCCcce
Confidence 34689999999999998752 35554555443
No 64
>PF05501 DUF755: Domain of unknown function (DUF755) ; InterPro: IPR008474 This family is predominated by ORFs from Anelloviridae. The function of this family remains to be determined.
Probab=46.78 E-value=15 Score=34.44 Aligned_cols=6 Identities=17% Similarity=0.761 Sum_probs=2.5
Q ss_pred HHHHHH
Q 006954 355 IIDFLR 360 (624)
Q Consensus 355 IV~II~ 360 (624)
+++|++
T Consensus 54 L~~l~~ 59 (123)
T PF05501_consen 54 LMQLLQ 59 (123)
T ss_pred HHHHHH
Confidence 444444
No 65
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=42.96 E-value=13 Score=44.58 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=48.2
Q ss_pred CccccccCCCchhhhccCCCCHHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHHhhh
Q 006954 202 PVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAY--------------S----------SPLE------FLADVRLTFSN 251 (624)
Q Consensus 202 PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y--------------~----------S~~e------F~~DvrLIF~N 251 (624)
++| +..+|-|..+...|.+|+|++..|.+..| . ++.+ ...-+.+|-.|
T Consensus 89 ~~d--~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~a 166 (1113)
T KOG0644|consen 89 MLD--KPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGCA 166 (1113)
T ss_pred CcC--CCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcccccc
Confidence 444 44788899999999999999999998777 2 3333 56677889999
Q ss_pred hcccCCCCCHHH
Q 006954 252 AMTYNPPGNDFH 263 (624)
Q Consensus 252 A~~YN~~~S~V~ 263 (624)
|+.++.|++.|-
T Consensus 167 t~~~akPgtmvq 178 (1113)
T KOG0644|consen 167 TFSIAKPGTMVQ 178 (1113)
T ss_pred eeeecCcHHHHH
Confidence 999999999554
No 66
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=39.73 E-value=79 Score=28.16 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=41.5
Q ss_pred cCCCCCHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 232 SNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 232 ~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
.-.|.|..-|...|..|-.....++..+..+..+|..|...|++.|+.+
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3468888888888888877777777778999999999999999999865
No 67
>PRK11546 zraP zinc resistance protein; Provisional
Probab=37.91 E-value=1.1e+02 Score=29.53 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=46.5
Q ss_pred CCCCCCCCCCChhHHHHHHHhhhhhHHHHHHhhhccc---------ccCCCCChHHHHHHHHHHHHHHh
Q 006954 550 GESAPNERQVSPDKLYRATLLKNRFADTILKAKEKTL---------SQGDKGDPEKLRREREELELQKR 609 (624)
Q Consensus 550 ~~~~~~~~~~~~~k~~raa~l~~r~ad~i~ka~~~~~---------~~~~~~dp~~~~~~~~e~e~~~~ 609 (624)
|-....-.|++||+.=-+=-|.+.|.+-....|++.. -...+-|++|++.-..|+..++.
T Consensus 35 G~~~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 35 GMWQQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred CCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3334466789999988888899999999999888654 46889999988777777665553
No 68
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=37.83 E-value=73 Score=40.37 Aligned_cols=60 Identities=37% Similarity=0.438 Sum_probs=25.5
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccCCCCcccCC
Q 006954 444 EPPVSSYPPMEIEKDTAIKSSKRVSPGSSSGSESSSSSDSESDDVKASSPVSASKVPKVSGH 505 (624)
Q Consensus 444 ~~p~~~~~pv~iekd~~~~sss~ssssSSSsS~S~SSs~S~Sd~~~~~~~~~~~~~~~~~~~ 505 (624)
.++..+.||-.--.......+++++|+|+|.|+|.|+||| |++++++..-..+.+....+
T Consensus 415 k~~~~~~P~s~~~~~~~~~ass~~~S~SsS~SESsS~SDS--ESESSSSDSE~nep~~~~sP 474 (1191)
T PF05110_consen 415 KPPSRSAPPSAPQSNPESAASSSSSSSSSSESESSSSSDS--ESESSSSDSEENEPPRTPSP 474 (1191)
T ss_pred CCCCcCCCCccCCCCCCcccccCCCCCCCCCCCccCcccc--ccccccccccccCCCCCCCC
Confidence 3444444433333333333334444444444555555444 44444444444454444333
No 69
>PF11596 DUF3246: Protein of unknown function (DUF3246); InterPro: IPR021642 This is a small family of fungal proteins one of whose members, A3LUS4 from SWISSPROT from Pichia stipitis is described as being an extremely serine rich protein-mucin-like protein.
Probab=37.48 E-value=21 Score=36.55 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCCCCC
Q 006954 465 KRVSPGSSSGSESSSS 480 (624)
Q Consensus 465 s~ssssSSSsS~S~SS 480 (624)
++|+|++|++|.||||
T Consensus 226 sGsGssgs~~SgSGSS 241 (241)
T PF11596_consen 226 SGSGSSGSGSSGSGSS 241 (241)
T ss_pred ccccCCCCCCCcCCCC
Confidence 3344444444444443
No 70
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=36.52 E-value=24 Score=38.11 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 006954 79 KDLVHKLTSDL 89 (624)
Q Consensus 79 ~~L~~rl~~El 89 (624)
.+|++.-+-||
T Consensus 18 ~~~kr~arpel 28 (407)
T KOG2130|consen 18 LELKRKARPEL 28 (407)
T ss_pred HHHHHhcChhh
Confidence 44444444443
No 71
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=36.16 E-value=5.6 Score=46.37 Aligned_cols=74 Identities=9% Similarity=-0.060 Sum_probs=65.8
Q ss_pred CCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHH
Q 006954 197 WVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKF 272 (624)
Q Consensus 197 ~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V~~~A~~L~~~ 272 (624)
..|..-+| ...+|+||.+++-||.+..+.+++..++|.....|..|+-.+|.|+-.|+.....++..+..|.+.
T Consensus 214 er~w~~~d--g~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 214 ERLWKLPD--GEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred cccccCcc--cccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 34444444 447999999999999999999999999999999999999999999999999999999999888764
No 72
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=35.60 E-value=96 Score=35.98 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=11.9
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHH
Q 006954 375 EIDIDDLSNDTLLTLRKLLDDYLEE 399 (624)
Q Consensus 375 EIDIdsL~~eTL~eL~~yV~~~L~~ 399 (624)
|+++|.+..=+-..=..|+..|-.+
T Consensus 39 efn~dd~n~wm~ldd~nflntwtkn 63 (782)
T PF07218_consen 39 EFNVDDINSWMKLDDANFLNTWTKN 63 (782)
T ss_pred ccCcccchhcccccHHHHHHHHhhc
Confidence 5555554433332334466666443
No 73
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.58 E-value=85 Score=35.11 Aligned_cols=52 Identities=35% Similarity=0.436 Sum_probs=30.7
Q ss_pred CCCCChhHHH------HHHHhhhhhHHHHHHhhhcccccCCCCChHHHHH-HHHHHHHHHhh
Q 006954 556 ERQVSPDKLY------RATLLKNRFADTILKAKEKTLSQGDKGDPEKLRR-EREELELQKRK 610 (624)
Q Consensus 556 ~~~~~~~k~~------raa~l~~r~ad~i~ka~~~~~~~~~~~dp~~~~~-~~~e~e~~~~~ 610 (624)
.||-=+|+.| |.+++..|=|+-=--++|++. .++||||+|+ |-+|++|+.|+
T Consensus 371 ~RQ~~~e~~~K~th~~rqEaaQ~kk~Ek~Ka~kekl~---a~~d~Ek~rr~EakerkR~~K~ 429 (440)
T KOG2357|consen 371 NRQRVEEEFLKLTHAARQEAAQEKKAEKKKAEKEKLK---ASGDPEKQRRKEAKERKRQAKK 429 (440)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHHHHHh
Confidence 4555555443 566666666664433455544 4579999985 55666665543
No 74
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=25.06 E-value=1e+02 Score=25.75 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHh
Q 006954 224 GTIKEKMASNAYSSPLEFLADVRLTF 249 (624)
Q Consensus 224 ~tIkkKL~~~~Y~S~~eF~~DvrLIF 249 (624)
..|+..+..|.|.|..++++|.-.++
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~l 37 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLL 37 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999987766
No 75
>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C subunit that is part of the V1 complex, and is localised to the interface between the V1 and V0 complexes []. This subunit does not show any homology with F-ATPase subunits. The C subunit plays an essential role in controlling the assembly of V-ATPase, acting as a flexible stator that holds together the catalytic (V1) and membrane (V0) sectors of the enzyme []. The release of subunit C from the ATPase complex results in the dissociation of the V1 and V0 subcomplexes, which is an important mechanism in controlling V-ATPase activity in cells. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033180 proton-transporting V-type ATPase, V1 domain; PDB: 1U7L_A.
Probab=22.64 E-value=12 Score=41.31 Aligned_cols=60 Identities=28% Similarity=0.300 Sum_probs=39.6
Q ss_pred HHHHHHhhhhhHHHHHHhhhcccc-cCCCCChHHHHHHHHHHHHH---HhhcccceeccccccC
Q 006954 564 LYRATLLKNRFADTILKAKEKTLS-QGDKGDPEKLRREREELELQ---KRKGLTFTINLTYANF 623 (624)
Q Consensus 564 ~~raa~l~~r~ad~i~ka~~~~~~-~~~~~dp~~~~~~~~e~e~~---~~~~~~~~~~~~~~~~ 623 (624)
||+..|+|.=..|.+-|||||-+. ..=+.|+|..+.+++|+++. .++..+-|+.+..+||
T Consensus 222 L~~VtlFkk~~~eF~~~~re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~f 285 (371)
T PF03223_consen 222 LFSVTLFKKVVDEFKNKCREKKFIVRDFKYDEEESEEEKEEREKLETEEKKQWGELLRWCKTNF 285 (371)
T ss_dssp EEEEEEEGGGHHHHHHHHHHTT-EEE-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccHHHHHHHHHHcCCeeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999877 34567888766665555544 4444466666655554
No 76
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.97 E-value=1.1e+02 Score=34.64 Aligned_cols=8 Identities=50% Similarity=0.912 Sum_probs=3.7
Q ss_pred CCCCcccC
Q 006954 432 DLPDEDID 439 (624)
Q Consensus 432 e~~dEdvd 439 (624)
+..+++||
T Consensus 87 ~~~~d~vd 94 (483)
T KOG2236|consen 87 DQPDDLVD 94 (483)
T ss_pred cccccccc
Confidence 33444555
No 77
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=20.46 E-value=3.3e+02 Score=23.58 Aligned_cols=58 Identities=29% Similarity=0.413 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhhcCCcChHHHHHHHHhhcCCCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 006954 332 MTDQEKHNLGRELESLLAEMPVHIIDFLREHSSNGRETGEDEIEIDIDDLSNDTLLTLRKLLDDYLEEK 400 (624)
Q Consensus 332 MT~eEK~~L~~~I~~Lp~E~l~~IV~II~k~~p~l~~~~~dEIEIDIdsL~~eTL~eL~~yV~~~L~~k 400 (624)
.|..||.+|+.+|..+ .|-+..+|++...-. .|+- +=.|.++|-..|++-...|-+++
T Consensus 3 Vt~~EkeQLS~AID~m-nEGLD~fI~lYNeSe-------~Dep---Liql~detael~~~A~~~yG~e~ 60 (84)
T PF11458_consen 3 VTDQEKEQLSTAIDRM-NEGLDTFIQLYNESE-------KDEP---LIQLEDETAELIRQAREKYGQEK 60 (84)
T ss_pred CchHHHHHHHHHHHHH-HhhHHHHHHHHcccc-------cccc---hhhcchhHHHHHHHHHHHHhHHH
Confidence 5899999999999998 445666666554321 1222 23466788888888777775553
Done!