Query 006954
Match_columns 624
No_of_seqs 354 out of 1497
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 13:20:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oss_A HUNK1 protein, bromodom 99.9 1.1E-27 3.8E-32 220.3 13.3 105 176-280 19-123 (127)
2 3g0l_A Hwalp4, bromodomain adj 99.9 4E-27 1.4E-31 213.3 13.3 102 178-281 13-114 (117)
3 2ouo_A HUNK1 protein, bromodom 99.9 1.2E-27 4E-32 221.0 9.8 105 176-280 20-127 (130)
4 3fkm_X Signaling protein; brom 99.9 3.9E-27 1.3E-31 226.1 12.2 108 173-280 16-123 (166)
5 3d7c_A General control of amin 99.9 4.8E-27 1.6E-31 211.3 11.5 103 176-280 5-107 (112)
6 3p1f_A CREB-binding protein; s 99.9 8E-27 2.7E-31 212.0 12.2 109 175-283 8-117 (119)
7 4alg_A Bromodomain-containing 99.9 6.2E-27 2.1E-31 222.1 11.5 106 175-280 29-134 (154)
8 3jvl_A Bromodomain-containing 99.9 3.4E-27 1.2E-31 214.7 8.5 105 176-280 7-114 (120)
9 2d9e_A Peregrin; four-helix bu 99.9 1.4E-26 4.8E-31 211.3 12.4 106 177-284 6-111 (121)
10 3nxb_A CAT eye syndrome critic 99.9 8.9E-27 3E-31 210.7 10.3 100 177-278 15-114 (116)
11 3q2e_A Bromodomain and WD repe 99.9 1.5E-26 5.2E-31 211.4 11.7 106 177-284 9-115 (123)
12 3mb3_A PH-interacting protein; 99.9 1.3E-26 4.3E-31 215.1 11.1 104 177-282 20-124 (135)
13 1e6i_A Transcriptional activat 99.9 1.2E-26 4.1E-31 211.7 10.4 100 179-280 14-113 (121)
14 2dat_A Possible global transcr 99.9 3.1E-26 1.1E-30 209.4 12.1 103 176-280 11-119 (123)
15 2i7k_A Bromodomain-containing 99.9 3.5E-26 1.2E-30 207.6 12.2 104 175-280 5-108 (117)
16 2yyn_A Transcription intermedi 99.9 3.8E-26 1.3E-30 212.1 12.4 103 175-280 17-121 (135)
17 3ljw_A Protein polybromo-1; al 99.9 6.4E-26 2.2E-30 206.5 11.8 108 176-285 6-119 (120)
18 2grc_A Probable global transcr 99.9 7.6E-26 2.6E-30 208.5 12.3 105 177-283 10-121 (129)
19 3mb4_A Protein polybromo-1; PB 99.9 3.8E-26 1.3E-30 209.1 9.9 103 177-281 14-122 (124)
20 3rcw_A Bromodomain-containing 99.9 1.1E-25 3.9E-30 208.7 13.0 106 176-283 11-116 (135)
21 3iu5_A Protein polybromo-1; PB 99.9 9.5E-26 3.2E-30 204.1 10.9 103 178-282 5-113 (116)
22 3hme_A Bromodomain-containing 99.9 1.6E-25 5.5E-30 204.8 11.7 102 177-280 12-113 (123)
23 3mqm_A Probable histone-lysine 99.9 1.9E-25 6.4E-30 205.0 11.6 107 177-285 8-120 (126)
24 3k2j_A Protein polybromo-1; PB 99.9 3.8E-25 1.3E-29 204.2 12.0 105 176-282 15-125 (130)
25 3uv4_A Second bromodomain of h 99.9 1.3E-24 4.5E-29 206.9 10.6 104 179-284 30-134 (158)
26 2ri7_A Nucleosome-remodeling f 99.9 1.7E-24 5.8E-29 208.5 9.5 103 176-280 70-172 (174)
27 3o36_A Transcription intermedi 99.9 1E-23 3.4E-28 205.1 13.6 103 175-280 78-182 (184)
28 3tlp_A Protein polybromo-1; PB 99.9 7.2E-24 2.4E-28 200.0 10.8 101 179-281 25-132 (150)
29 3dai_A ATPase family AAA domai 99.9 1.6E-23 5.5E-28 193.2 12.0 100 177-278 9-112 (130)
30 2ro1_A Transcription intermedi 99.9 2.5E-23 8.5E-28 203.5 9.1 99 175-280 73-176 (189)
31 3uv5_A Transcription initiatio 99.9 6.4E-23 2.2E-27 210.3 11.6 106 177-284 13-118 (265)
32 3u5n_A E3 ubiquitin-protein li 99.9 1.4E-22 4.9E-27 200.6 12.1 103 175-280 78-200 (207)
33 2dkw_A Hypothetical protein KI 99.9 1.5E-22 5.1E-27 187.1 11.3 96 176-278 10-109 (131)
34 3uv5_A Transcription initiatio 99.9 3.4E-22 1.2E-26 204.9 11.3 104 178-283 136-240 (265)
35 3aad_A Transcription initiatio 99.9 1.9E-22 6.6E-27 209.5 8.5 104 177-282 46-149 (292)
36 3aad_A Transcription initiatio 99.8 2.1E-21 7.3E-26 201.7 11.2 100 183-284 174-274 (292)
37 2r0y_A Chromatin structure-rem 99.8 7.1E-21 2.4E-25 199.3 8.8 86 192-279 177-262 (311)
38 2r10_A Chromatin structure-rem 99.8 1.1E-20 3.7E-25 201.7 9.5 85 193-279 228-312 (361)
39 2r10_A Chromatin structure-rem 99.8 7.9E-20 2.7E-24 195.1 10.2 99 179-281 79-180 (361)
40 2r0y_A Chromatin structure-rem 99.8 5.2E-19 1.8E-23 185.2 7.6 100 177-280 27-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 4.9E-17 1.7E-21 152.1 12.5 101 177-283 6-112 (147)
42 2jns_A Bromodomain-containing 99.7 6.8E-18 2.3E-22 146.3 2.7 79 322-400 8-86 (90)
43 3lqh_A Histone-lysine N-methyl 99.4 1.8E-13 6.1E-18 133.0 7.6 91 177-280 74-164 (183)
44 2lm0_A AF4/FMR2 family member 93.3 0.15 5E-06 45.9 6.4 61 332-394 59-120 (125)
45 3h8k_B Autocrine motility fact 30.3 26 0.0009 23.6 1.9 26 560-587 2-27 (28)
46 1u7l_A Vacuolar ATP synthase s 26.3 13 0.00046 39.7 -0.1 59 564-622 233-295 (392)
No 1
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=1.1e-27 Score=220.28 Aligned_cols=105 Identities=42% Similarity=0.768 Sum_probs=100.5
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhccc
Q 006954 176 NVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (624)
Q Consensus 176 ~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (624)
..++...|..||..|++|+.+|+|..|||+.++.+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46777888999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 256 NPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 256 N~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
|+++|.||.+|..|++.|++.|+++
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999865
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.94 E-value=4e-27 Score=213.30 Aligned_cols=102 Identities=35% Similarity=0.677 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCC
Q 006954 178 ILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (624)
Q Consensus 178 ~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 257 (624)
..++.|..||..|++|+.+|+|..|||+. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNE 90 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChh--hcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 57899999999999999999999999976 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 006954 258 PGNDFHIMADTLRKFFEARWKAIE 281 (624)
Q Consensus 258 ~~S~V~~~A~~L~~~Fe~~~k~ie 281 (624)
++|.+|.+|..|++.|++.|+++-
T Consensus 91 ~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 91 DDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874
No 3
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.94 E-value=1.2e-27 Score=220.99 Aligned_cols=105 Identities=42% Similarity=0.741 Sum_probs=100.3
Q ss_pred cHHHHHHHHHHHHHHHcCCC---CCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhh
Q 006954 176 NVILMKQCETLLKRLMSHQY---GWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (624)
Q Consensus 176 ~~~~~k~c~~iL~~L~~~~~---a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (624)
...+++.|..||..|+.++. +|+|..|||+..+++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||
T Consensus 20 ~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na 99 (130)
T 2ouo_A 20 VSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNC 99 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46788999999999999874 899999999988889999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 253 MTYNPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 253 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
++||+++|.||.+|..|++.|++.|+.|
T Consensus 100 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 100 YKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999875
No 4
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=3.9e-27 Score=226.10 Aligned_cols=108 Identities=32% Similarity=0.548 Sum_probs=99.2
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhh
Q 006954 173 GTGNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (624)
Q Consensus 173 ~~~~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (624)
......|.+.|..||..|++++.+++|..|||+.++.+||||.+|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 16 ~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (166)
T 3fkm_X 16 FQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNC 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 253 MTYNPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 253 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
++||+++|.||.+|..|+++|++.|+.+
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~l~~~ 123 (166)
T 3fkm_X 96 SLYNTSNSVVAITGKNIETYFNNQLIVM 123 (166)
T ss_dssp HHSSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999875
No 5
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.94 E-value=4.8e-27 Score=211.32 Aligned_cols=103 Identities=33% Similarity=0.598 Sum_probs=99.6
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhccc
Q 006954 176 NVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (624)
Q Consensus 176 ~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (624)
...|...|..||..|++|+.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCcc--cccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999965 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 256 NPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 256 N~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
|+++|.+|.+|..|++.|++.|+++
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999876
No 6
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.94 E-value=8e-27 Score=211.96 Aligned_cols=109 Identities=30% Similarity=0.503 Sum_probs=103.4
Q ss_pred CcHHHHHHHHHHHHHHHc-CCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhc
Q 006954 175 GNVILMKQCETLLKRLMS-HQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAM 253 (624)
Q Consensus 175 ~~~~~~k~c~~iL~~L~~-~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~ 253 (624)
...++.+.|..+|..|++ ++.+|+|..|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+
T Consensus 8 ~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 87 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 346889999999999998 6899999999998877899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 006954 254 TYNPPGNDFHIMADTLRKFFEARWKAIEKK 283 (624)
Q Consensus 254 ~YN~~~S~V~~~A~~L~~~Fe~~~k~ie~~ 283 (624)
+||+++|.||.+|..|++.|++.|+.+.+.
T Consensus 88 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 88 LYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988654
No 7
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=6.2e-27 Score=222.08 Aligned_cols=106 Identities=39% Similarity=0.676 Sum_probs=101.5
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcc
Q 006954 175 GNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254 (624)
Q Consensus 175 ~~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 254 (624)
...++...|..||+.|++++.+|+|..|||+..+++||||++|++||||+||++||+++.|.++.+|.+||+|||.||++
T Consensus 29 ~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 108 (154)
T 4alg_A 29 VTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYI 108 (154)
T ss_dssp CBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34678888899999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 255 YNPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 255 YN~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
||++++.||.+|..|+++|++.|+.+
T Consensus 109 YN~~~s~i~~~A~~L~~~f~~~~~~l 134 (154)
T 4alg_A 109 YNKPTDDIVLMAQTLEKIFLQKVASM 134 (154)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHTTS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999875
No 8
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.94 E-value=3.4e-27 Score=214.73 Aligned_cols=105 Identities=43% Similarity=0.743 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHHHHHcCCC---CCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhh
Q 006954 176 NVILMKQCETLLKRLMSHQY---GWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNA 252 (624)
Q Consensus 176 ~~~~~k~c~~iL~~L~~~~~---a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA 252 (624)
..++++.|..||..|++++. +|+|..|||+..+++||||++|++||||+||++||.+|.|.++.+|..||+|||.||
T Consensus 7 ~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (120)
T 3jvl_A 7 ISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNC 86 (120)
T ss_dssp SCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999887 999999999987779999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 253 MTYNPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 253 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
++||+++|.||.+|..|++.|++.|+.+
T Consensus 87 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 114 (120)
T 3jvl_A 87 YKYNPPDHEVVAMARKLQDVFEMRFAKM 114 (120)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999875
No 9
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=211.27 Aligned_cols=106 Identities=28% Similarity=0.402 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
.++...|..||..|++|+.+|+|..|||+. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||++||
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCcc--ccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 006954 257 PPGNDFHIMADTLRKFFEARWKAIEKKL 284 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~~k~ie~~~ 284 (624)
+++|.+|.+|..|++.|+..|.++.+.+
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~~ 111 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQA 111 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999886644
No 10
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.94 E-value=8.9e-27 Score=210.74 Aligned_cols=100 Identities=29% Similarity=0.541 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
.++.+.|..||..|++|+.+|+|..|||+. .+||||.+|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDES--YAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChh--hccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 458999999999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 006954 257 PPGNDFHIMADTLRKFFEARWK 278 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~~k 278 (624)
+++|.||.+|..|++.|++.|.
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~ 114 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMM 114 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999886
No 11
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=211.43 Aligned_cols=106 Identities=40% Similarity=0.679 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
..|.++|..||..|++|+.+++|..||++. .+||||.+|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 569999999999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHhhC
Q 006954 257 PP-GNDFHIMADTLRKFFEARWKAIEKKL 284 (624)
Q Consensus 257 ~~-~S~V~~~A~~L~~~Fe~~~k~ie~~~ 284 (624)
++ +|.||.+|..|++.|++.|+.+...+
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 99999999999999999999986554
No 12
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.93 E-value=1.3e-26 Score=215.14 Aligned_cols=104 Identities=38% Similarity=0.649 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
..|.+.|..||..|++|+.+++|..|||+. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLL--EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChh--hCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 569999999999999999999999999964 899999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHh
Q 006954 257 PP-GNDFHIMADTLRKFFEARWKAIEK 282 (624)
Q Consensus 257 ~~-~S~V~~~A~~L~~~Fe~~~k~ie~ 282 (624)
++ +|.||.+|..|+++|++.|+.+..
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~ 124 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLS 124 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 999999999999999999998754
No 13
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.93 E-value=1.2e-26 Score=211.68 Aligned_cols=100 Identities=36% Similarity=0.645 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCC
Q 006954 179 LMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPP 258 (624)
Q Consensus 179 ~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~ 258 (624)
++..|..||..|++|+.+|+|..|||+. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChh--hCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4789999999999999999999999965 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 006954 259 GNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 259 ~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
+|.+|.+|..|++.|++.|+.|
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999876
No 14
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=3.1e-26 Score=209.40 Aligned_cols=103 Identities=26% Similarity=0.406 Sum_probs=97.5
Q ss_pred cHHHHHHHHHHHHHHHcCC------CCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 006954 176 NVILMKQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTF 249 (624)
Q Consensus 176 ~~~~~k~c~~iL~~L~~~~------~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF 249 (624)
...+.+.|..||+.|++++ .+|+|..||+. ..+||||++|++||||+||++||.++.|.++.+|.+||+|||
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSR--KELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCT--TTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCc--ccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3678999999999999986 68999999985 489999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 250 SNAMTYNPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 250 ~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
.||++||+++|.||.+|..|+++|++.|+++
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999998864
No 15
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.93 E-value=3.5e-26 Score=207.56 Aligned_cols=104 Identities=32% Similarity=0.407 Sum_probs=99.5
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcc
Q 006954 175 GNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMT 254 (624)
Q Consensus 175 ~~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~ 254 (624)
...++...|..||..|++++.+++|..|||+. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 5 ~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~--~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~ 82 (117)
T 2i7k_A 5 EQTPLQEALNQLMRQLQRKDPSAFFSFPVTDF--IAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMI 82 (117)
T ss_dssp THHHHHHHHHHHHHHHHTSSGGGTSSSCCCTT--TSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcccHHhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999964 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 255 YNPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 255 YN~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
||+++|.+|.+|..|++.|++.|...
T Consensus 83 yN~~~s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 83 YNKPETIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp TSCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 16
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.93 E-value=3.8e-26 Score=212.13 Aligned_cols=103 Identities=38% Similarity=0.692 Sum_probs=98.2
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHhhhh
Q 006954 175 GNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMAS--NAYSSPLEFLADVRLTFSNA 252 (624)
Q Consensus 175 ~~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~--~~Y~S~~eF~~DvrLIF~NA 252 (624)
....+++.|..||..|++|+.+|+|..||+. .+||||++|++||||+||++||.+ +.|.++.+|.+||+|||.||
T Consensus 17 m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na 93 (135)
T 2yyn_A 17 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNC 93 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHH
Confidence 3466889999999999999999999999985 599999999999999999999998 59999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 253 MTYNPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 253 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
++||+++|.||.+|..|+++|++.|+++
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 121 (135)
T 2yyn_A 94 AEFNEPDSEVANAGIKLENYFEELLKNL 121 (135)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987
No 17
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.93 E-value=6.4e-26 Score=206.45 Aligned_cols=108 Identities=31% Similarity=0.479 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHHHHcCCC------CCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 006954 176 NVILMKQCETLLKRLMSHQY------GWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTF 249 (624)
Q Consensus 176 ~~~~~k~c~~iL~~L~~~~~------a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF 249 (624)
...|.+.|..||..|+++.. +++|..||+ ...+||||.+|++||||+||++||.+|.|.++.+|..||+|||
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~--~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPS--KVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCC--TTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCC--cccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 46788999999999999876 999999988 4489999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 006954 250 SNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLP 285 (624)
Q Consensus 250 ~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~ie~~~P 285 (624)
.||++||+++|.||.+|..|+++|++.|++|+.+.|
T Consensus 84 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~~~ 119 (120)
T 3ljw_A 84 KNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEM 119 (120)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999976544
No 18
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.93 E-value=7.6e-26 Score=208.55 Aligned_cols=105 Identities=28% Similarity=0.416 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHcCC-------CCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 006954 177 VILMKQCETLLKRLMSHQ-------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTF 249 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~-------~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF 249 (624)
..+.+.|..||..|++++ .+++|..||+. ..+||||.+|++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 10 ~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 10 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR--KELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCT--TTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCc--ccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 578999999999999885 58999999884 489999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 006954 250 SNAMTYNPPGNDFHIMADTLRKFFEARWKAIEKK 283 (624)
Q Consensus 250 ~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~ie~~ 283 (624)
.||++||+++|.||.+|..|+++|++.|+.|...
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999998653
No 19
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.93 E-value=3.8e-26 Score=209.08 Aligned_cols=103 Identities=25% Similarity=0.395 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHc------CCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 006954 177 VILMKQCETLLKRLMS------HQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFS 250 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~------~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~ 250 (624)
.++.+.|..||..|++ |+.+++|..||+. ..+||||++|++||||+||++||.++.|.++.+|..||+|||.
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~--~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 91 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSR--SELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFN 91 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCT--TTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCc--cccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999 5567999999885 4899999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006954 251 NAMTYNPPGNDFHIMADTLRKFFEARWKAIE 281 (624)
Q Consensus 251 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~ie 281 (624)
||++||+++|.||.+|..|+++|++.|++++
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 92 NACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999874
No 20
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=208.72 Aligned_cols=106 Identities=28% Similarity=0.457 Sum_probs=101.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhccc
Q 006954 176 NVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (624)
Q Consensus 176 ~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (624)
..++...|..||..|++|+.+|+|..||++. .+||||.+|++||||+||++||.+|.|.++.+|..||+|||.||++|
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLK--EVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKY 88 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCChh--hcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999976 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 006954 256 NPPGNDFHIMADTLRKFFEARWKAIEKK 283 (624)
Q Consensus 256 N~~~S~V~~~A~~L~~~Fe~~~k~ie~~ 283 (624)
|+++|.+|.+|..|++.|+..|+.+...
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~~~~ 116 (135)
T 3rcw_A 89 NARDTVFYRAAVRLRDQGGVVLRQARRE 116 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987543
No 21
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.92 E-value=9.5e-26 Score=204.09 Aligned_cols=103 Identities=22% Similarity=0.364 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 006954 178 ILMKQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSN 251 (624)
Q Consensus 178 ~~~k~c~~iL~~L~~~~------~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~N 251 (624)
.+++.|..||..|+++. .+++|..||+ ...+||||.+|++||||+||++||.++.|.++.+|..||+|||.|
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~--~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPK--RRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCC--GGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCC--cccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999984 5999999988 458999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 006954 252 AMTYNPPGNDFHIMADTLRKFFEARWKAIEK 282 (624)
Q Consensus 252 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~ie~ 282 (624)
|++||+++|.+|.+|..|+++|++.|+++.+
T Consensus 83 a~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999864
No 22
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.92 E-value=1.6e-25 Score=204.76 Aligned_cols=102 Identities=35% Similarity=0.478 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
.++...|..||..|++++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDA--IAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYN 89 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChh--hccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 468899999999999999999999999966 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 257 PPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
+++|.+|.+|..|++.|++.|.+.
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 90 RPDTVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 23
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.92 E-value=1.9e-25 Score=204.96 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHcCC------CCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 006954 177 VILMKQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFS 250 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~------~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~ 250 (624)
..+.+.|..|++.|+++. .+|+|..||+.. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK--KNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGG--GCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 567889999999999975 499999999855 899999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 006954 251 NAMTYNPPGNDFHIMADTLRKFFEARWKAIEKKLP 285 (624)
Q Consensus 251 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~ie~~~P 285 (624)
||++||+++|.+|.+|..|++.|++.|.++..+++
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~ 120 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQID 120 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998866543
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.92 E-value=3.8e-25 Score=204.19 Aligned_cols=105 Identities=25% Similarity=0.346 Sum_probs=99.0
Q ss_pred cHHHHHHHHHHHHHHHcCCC------CCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 006954 176 NVILMKQCETLLKRLMSHQY------GWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTF 249 (624)
Q Consensus 176 ~~~~~k~c~~iL~~L~~~~~------a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF 249 (624)
...+..+|..|++.|.++.. +++|..||+. ..+||||++|++||||+||++||.++.|.++.+|..||+|||
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~--~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSK--KKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMF 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCT--TTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCCh--hhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 46789999999999998744 9999999885 489999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 006954 250 SNAMTYNPPGNDFHIMADTLRKFFEARWKAIEK 282 (624)
Q Consensus 250 ~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~ie~ 282 (624)
.||++||+++|.||.+|..|++.|++.|+++..
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 125 (130)
T 3k2j_A 93 ENAKRYNVPNSAIYKRVLKLQQVMQAKKKELAR 125 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.91 E-value=1.3e-24 Score=206.90 Aligned_cols=104 Identities=27% Similarity=0.555 Sum_probs=92.1
Q ss_pred HHHHHHHHHHH-HHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCC
Q 006954 179 LMKQCETLLKR-LMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNP 257 (624)
Q Consensus 179 ~~k~c~~iL~~-L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~ 257 (624)
+...+..|+.. |+.++.+|+|..||++. .+||||.+|++||||+||++||.++.|.++.+|..||+|||.||++||+
T Consensus 30 l~~iL~~i~~~kl~~~~~s~~F~~PVd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~ 107 (158)
T 3uv4_A 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 107 (158)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCcCChh--hcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 33334444433 55678999999999965 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 006954 258 PGNDFHIMADTLRKFFEARWKAIEKKL 284 (624)
Q Consensus 258 ~~S~V~~~A~~L~~~Fe~~~k~ie~~~ 284 (624)
++|.||.+|..|...|+..|+++.+++
T Consensus 108 ~~s~i~~~A~~L~~~~~~~l~e~~~~l 134 (158)
T 3uv4_A 108 PESQYTKTAQEIVNVCYQTLTEYDEHL 134 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876544
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.90 E-value=1.7e-24 Score=208.46 Aligned_cols=103 Identities=34% Similarity=0.618 Sum_probs=98.5
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhccc
Q 006954 176 NVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (624)
Q Consensus 176 ~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (624)
....++.|..||..|++|+.+++|..||++. .+|+||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 70 ~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 147 (174)
T 2ri7_A 70 TEKDYEGLKRVLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYY 147 (174)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhcCCCcc--cCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999976 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 256 NPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 256 N~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
|+++|.+|.+|..|+++|++.|+.+
T Consensus 148 N~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 148 NPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998764
No 27
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.90 E-value=1e-23 Score=205.08 Aligned_cols=103 Identities=38% Similarity=0.692 Sum_probs=98.2
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHhhhh
Q 006954 175 GNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMAS--NAYSSPLEFLADVRLTFSNA 252 (624)
Q Consensus 175 ~~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~--~~Y~S~~eF~~DvrLIF~NA 252 (624)
....++++|..||..|+.|+.+++|..||+. .+|+||++|++||||+||++||++ +.|.++.+|.+||+|||.||
T Consensus 78 l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na 154 (184)
T 3o36_A 78 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNC 154 (184)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchhhhhhcccccc---CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999984 499999999999999999999998 78999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 253 MTYNPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 253 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
++||+++|.||.+|..|+++|++.|+++
T Consensus 155 ~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 155 AEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999886
No 28
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.90 E-value=7.2e-24 Score=199.97 Aligned_cols=101 Identities=26% Similarity=0.447 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHcCCC-------CCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhh
Q 006954 179 LMKQCETLLKRLMSHQY-------GWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSN 251 (624)
Q Consensus 179 ~~k~c~~iL~~L~~~~~-------a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~N 251 (624)
...+|..||..|+++.. +++|..||+ ...+||||++|++||||+||++||.+|.|.++.+|..||+|||.|
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~--~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPS--KKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCC--TTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCc--hhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 46778999999988654 999999988 448999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006954 252 AMTYNPPGNDFHIMADTLRKFFEARWKAIE 281 (624)
Q Consensus 252 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~ie 281 (624)
|++||+++|.||.+|..|+++|++.|+++.
T Consensus 103 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 132 (150)
T 3tlp_A 103 ARHYNEEGSQVYNDAHILEKLLKEKRKELG 132 (150)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999883
No 29
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.90 E-value=1.6e-23 Score=193.18 Aligned_cols=100 Identities=33% Similarity=0.425 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
..+...|..+|..|+.++.+|+|..|||+. .+||||.+|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 9 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (130)
T 3dai_A 9 RELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYN 86 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCccHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 567788999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHH----HHHHHHHHHHHHHHHH
Q 006954 257 PPGNDF----HIMADTLRKFFEARWK 278 (624)
Q Consensus 257 ~~~S~V----~~~A~~L~~~Fe~~~k 278 (624)
+++|++ +.+|..|++.|...++
T Consensus 87 ~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 87 PDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999877 6788888888887775
No 30
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.88 E-value=2.5e-23 Score=203.53 Aligned_cols=99 Identities=21% Similarity=0.313 Sum_probs=93.5
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhcc--CCCCHHHHHHHHhcC---CCCCHHHHHHHHHHHh
Q 006954 175 GNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIK--HPMDFGTIKEKMASN---AYSSPLEFLADVRLTF 249 (624)
Q Consensus 175 ~~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk--~PMDL~tIkkKL~~~---~Y~S~~eF~~DvrLIF 249 (624)
.....+++|..||..|+.|+.+|+|++||+ |+||.+|+ +||||+||++||+++ .|.++.+|++||+|||
T Consensus 73 m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif 146 (189)
T 2ro1_A 73 LSPANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMF 146 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHH
Confidence 345677899999999999999999999998 67999998 899999999999999 9999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 250 SNAMTYNPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 250 ~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
+||++|| +++.+|.+|..|+++|+++|+++
T Consensus 147 ~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~ 176 (189)
T 2ro1_A 147 KQFNKLT-EDKADVQSIIGLQRFFETRMNEA 176 (189)
T ss_dssp HHHHHHC-CSSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 58999999999999999999987
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.88 E-value=6.4e-23 Score=210.31 Aligned_cols=106 Identities=29% Similarity=0.522 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
..|...|..||..|++|+.+|+|..||++. .+||||.+|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 13 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 90 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 90 (265)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhhCCCChh--hcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcC
Confidence 578999999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 006954 257 PPGNDFHIMADTLRKFFEARWKAIEKKL 284 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~~k~ie~~~ 284 (624)
+++|.||.+|..|.+.|++.|+++..++
T Consensus 91 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~ 118 (265)
T 3uv5_A 91 GPKHSLTQISQSMLDLCDEKLKEKEDKL 118 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999875443
No 32
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.88 E-value=1.4e-22 Score=200.59 Aligned_cols=103 Identities=35% Similarity=0.647 Sum_probs=98.4
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHHhhh
Q 006954 175 GNVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMAS---NAYSSPLEFLADVRLTFSN 251 (624)
Q Consensus 175 ~~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~---~~Y~S~~eF~~DvrLIF~N 251 (624)
....+++.|..||..|++|+.+++|..||+. .+|+||.+|++||||+||++||++ +.|.++.+|.+||+|||.|
T Consensus 78 ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~N 154 (207)
T 3u5n_A 78 LSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKN 154 (207)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999985 599999999999999999999997 7999999999999999999
Q ss_pred hcccCC-----------------CCCHHHHHHHHHHHHHHHHHHHH
Q 006954 252 AMTYNP-----------------PGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 252 A~~YN~-----------------~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
|++||+ +++.|+.+|..|+.+|+.+|+++
T Consensus 155 a~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~ 200 (207)
T 3u5n_A 155 CERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEI 200 (207)
T ss_dssp HHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHh
Confidence 999999 99999999999999999999987
No 33
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=187.12 Aligned_cols=96 Identities=31% Similarity=0.440 Sum_probs=90.1
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhccc
Q 006954 176 NVILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTY 255 (624)
Q Consensus 176 ~~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~Y 255 (624)
..++...|..||..|++|+.+++|..| +||||++|++||||+||++||.+|.|.++.+|..||+|||.||++|
T Consensus 10 ~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~y 82 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEY 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred CCCCCH----HHHHHHHHHHHHHHHHH
Q 006954 256 NPPGND----FHIMADTLRKFFEARWK 278 (624)
Q Consensus 256 N~~~S~----V~~~A~~L~~~Fe~~~k 278 (624)
|+++|+ ||.+|..|++.|...++
T Consensus 83 N~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 83 NPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999995 57899999999888774
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.86 E-value=3.4e-22 Score=204.92 Aligned_cols=104 Identities=26% Similarity=0.539 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHH-HHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 178 ILMKQCETLLKR-LMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 178 ~~~k~c~~iL~~-L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
.+...|..++.. |+.|+.+|+|..||++. .+||||.+|++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 136 ~~~~il~~i~~~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN 213 (265)
T 3uv5_A 136 AFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 213 (265)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHhCCCChh--HhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 344555665544 77889999999999965 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 006954 257 PPGNDFHIMADTLRKFFEARWKAIEKK 283 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~~k~ie~~ 283 (624)
+++|.||.+|..|+..|+..|+++.+.
T Consensus 214 ~~~s~~~~~A~~l~~~~~~~~~~~~~~ 240 (265)
T 3uv5_A 214 GPESQYTKTAQEIVNVCYQTLTEYDEH 240 (265)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987543
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=1.9e-22 Score=209.54 Aligned_cols=104 Identities=28% Similarity=0.509 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
..+...|..||..|++|+.+|+|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~--~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 123 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 123 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCch--hcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHc
Confidence 556788999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh
Q 006954 257 PPGNDFHIMADTLRKFFEARWKAIEK 282 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~~k~ie~ 282 (624)
+++|.+|.+|..|...|++.|++++.
T Consensus 124 ~~~s~i~~~A~~L~~~~~~~~~~~~~ 149 (292)
T 3aad_A 124 GPKHSLTQISQSMLDLCDEKLKEKED 149 (292)
T ss_dssp CSSSHHHHHHTHHHHTTTTTGGGSHH
T ss_pred CCchHHHHHHHHHHHHHHhhhhcchh
Confidence 99999999999999999998876543
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=201.71 Aligned_cols=100 Identities=28% Similarity=0.601 Sum_probs=91.5
Q ss_pred HHHHH-HHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCH
Q 006954 183 CETLL-KRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGND 261 (624)
Q Consensus 183 c~~iL-~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~ 261 (624)
+..++ ..|+.++.+|+|..|||+. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+++|.
T Consensus 174 l~~i~~~~l~~~~~s~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~ 251 (292)
T 3aad_A 174 LDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQ 251 (292)
T ss_dssp HHHHHHHTGGGSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHhhhhhhcCcchhHHHhccccc--ccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 44444 3478899999999999954 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q 006954 262 FHIMADTLRKFFEARWKAIEKKL 284 (624)
Q Consensus 262 V~~~A~~L~~~Fe~~~k~ie~~~ 284 (624)
||.+|..|++.|+..|+.+..++
T Consensus 252 i~~~A~~L~~~~~~~~~~~~~~l 274 (292)
T 3aad_A 252 YTKTAQEIVNVCYQTLTEYDEHL 274 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999886544
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.82 E-value=7.1e-21 Score=199.33 Aligned_cols=86 Identities=28% Similarity=0.474 Sum_probs=82.8
Q ss_pred cCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHH
Q 006954 192 SHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRK 271 (624)
Q Consensus 192 ~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V~~~A~~L~~ 271 (624)
.|+.+|+|..|||+. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++||+++|.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChh--hcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 367899999999965 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 006954 272 FFEARWKA 279 (624)
Q Consensus 272 ~Fe~~~k~ 279 (624)
+|+..|++
T Consensus 255 ~f~~~~~~ 262 (311)
T 2r0y_A 255 YFNYLIQK 262 (311)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.82 E-value=1.1e-20 Score=201.75 Aligned_cols=85 Identities=28% Similarity=0.479 Sum_probs=82.4
Q ss_pred CCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHH
Q 006954 193 HQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYNPPGNDFHIMADTLRKF 272 (624)
Q Consensus 193 ~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN~~~S~V~~~A~~L~~~ 272 (624)
|+.+|+|..|||+. .+||||+||++||||+||++||.+|.|.++.+|..||+|||.||++||+++|.||.+|..|+++
T Consensus 228 ~~~s~~F~~pvd~~--~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTT--TCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChh--hcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 57899999999965 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 006954 273 FEARWKA 279 (624)
Q Consensus 273 Fe~~~k~ 279 (624)
|+..|+.
T Consensus 306 f~~~~~~ 312 (361)
T 2r10_A 306 FNYLIQK 312 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.80 E-value=7.9e-20 Score=195.09 Aligned_cols=99 Identities=22% Similarity=0.240 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcC--CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHhhhhccc
Q 006954 179 LMKQCETLLKRLMSH--QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS-SPLEFLADVRLTFSNAMTY 255 (624)
Q Consensus 179 ~~k~c~~iL~~L~~~--~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~-S~~eF~~DvrLIF~NA~~Y 255 (624)
+...|..+|..|.+. ..+++|..||+ +..+||||+||++||||+||++|| +.|. ++.+|..||+|||.||++|
T Consensus 79 ~~~~~~~~l~~l~~~~~~~~~~F~~p~~--~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~y 154 (361)
T 2r10_A 79 FNRFISFTLDVLIDKYKDIFKDFIKLPS--RKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAY 154 (361)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSCCC--TTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccHHhcCCCC--cccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhc
Confidence 457799999998764 45899999988 558999999999999999999998 5555 8999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006954 256 NPPGNDFHIMADTLRKFFEARWKAIE 281 (624)
Q Consensus 256 N~~~S~V~~~A~~L~~~Fe~~~k~ie 281 (624)
|+++|.||.+|..|+++|+..|....
T Consensus 155 N~~~s~i~~~a~~l~~~~~~~~~k~k 180 (361)
T 2r10_A 155 NEYDSLIVKNSMQVVMLIEFEVLKAK 180 (361)
T ss_dssp BCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999998753
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.76 E-value=5.2e-19 Score=185.20 Aligned_cols=100 Identities=22% Similarity=0.221 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHcC--CCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHhhhhc
Q 006954 177 VILMKQCETLLKRLMSH--QYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYS-SPLEFLADVRLTFSNAM 253 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~--~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~-S~~eF~~DvrLIF~NA~ 253 (624)
..|...|..+|..+... ..+++|..||+ +..+||||+||++||||+||++|| +.|. ++.+|.+||+|||.||+
T Consensus 27 p~~~~~~~~~L~~~~~~~r~~~~~F~~p~~--~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~ 102 (311)
T 2r0y_A 27 PKFNRFISFTLDVLIDKYKDIFKDFIKLPS--RKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQ 102 (311)
T ss_dssp TTHHHHHHHHHHHHHHHSHHHHGGGSSCCC--TTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCchhHHhcCCCC--cccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHH
Confidence 34667777777777764 46899999987 558999999999999999999999 5565 89999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 254 TYNPPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 254 ~YN~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
+||+++|.||.+|..|+++|++.|...
T Consensus 103 ~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 103 AYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999875
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=152.08 Aligned_cols=101 Identities=21% Similarity=0.288 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHcCC------CCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 006954 177 VILMKQCETLLKRLMSHQ------YGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFS 250 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~------~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~ 250 (624)
..+...+..|+..+++|. .+.+|...++ +. |+||. ++||+|.+|++||.+|.|.++++|..||.|||.
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPs--k~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPA--VD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCS--SC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCC--CC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 356788899999999984 4788998844 43 89998 999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 006954 251 NAMTYNPPGNDFHIMADTLRKFFEARWKAIEKK 283 (624)
Q Consensus 251 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~ie~~ 283 (624)
||++||.+||.||.+|..|+++|.+.+.++.+.
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999998653
No 42
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=6.8e-18 Score=146.29 Aligned_cols=79 Identities=24% Similarity=0.346 Sum_probs=72.6
Q ss_pred cCCcCCCCCCCCHHHHHHHHHHHhhcCCcChHHHHHHHHhhcCCCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 006954 322 EIVPTAVKPVMTDQEKHNLGRELESLLAEMPVHIIDFLREHSSNGRETGEDEIEIDIDDLSNDTLLTLRKLLDDYLEEK 400 (624)
Q Consensus 322 ~~~~ep~~r~MT~eEK~~L~~~I~~Lp~E~l~~IV~II~k~~p~l~~~~~dEIEIDIdsL~~eTL~eL~~yV~~~L~~k 400 (624)
....++.+++||++||++|+.+|+.||++++.+||+||++++|.+.+.+++||||||+.|++.|||+|++||.+||+.+
T Consensus 8 d~~~e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~~k 86 (90)
T 2jns_A 8 ESEEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKK 86 (90)
T ss_dssp CTTTTSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSCCC
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHhh
Confidence 3446677899999999999999999999999999999999999987667899999999999999999999999998765
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.42 E-value=1.8e-13 Score=133.00 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccccCCCchhhhccCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhcccC
Q 006954 177 VILMKQCETLLKRLMSHQYGWVFNTPVDVVKMNIPDYYTIIKHPMDFGTIKEKMASNAYSSPLEFLADVRLTFSNAMTYN 256 (624)
Q Consensus 177 ~~~~k~c~~iL~~L~~~~~a~~F~~PVDp~~~~~PdYy~iIk~PMDL~tIkkKL~~~~Y~S~~eF~~DvrLIF~NA~~YN 256 (624)
..+...+..||..|..++.+++|+.. .++.||||.||++||+.|.|.++.+|..||.|||.||..||
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~ 140 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSD 140 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 45667789999999999999999763 14999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 006954 257 PPGNDFHIMADTLRKFFEARWKAI 280 (624)
Q Consensus 257 ~~~S~V~~~A~~L~~~Fe~~~k~i 280 (624)
..++.+..++..|+.+|++.++.+
T Consensus 141 ~~~~e~~~ag~~l~~~f~~~l~~v 164 (183)
T 3lqh_A 141 GGQPEIKKANSMVKSFFIRQMERV 164 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999887
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=93.30 E-value=0.15 Score=45.91 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHhhcCCc-ChHHHHHHHHhhcCCCCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q 006954 332 MTDQEKHNLGRELESLLAE-MPVHIIDFLREHSSNGRETGEDEIEIDIDDLSNDTLLTLRKLLD 394 (624)
Q Consensus 332 MT~eEK~~L~~~I~~Lp~E-~l~~IV~II~k~~p~l~~~~~dEIEIDIdsL~~eTL~eL~~yV~ 394 (624)
--.+|.+.|...|-.|-.. .+.+||++|.+- +. ....+..+.||+.+||..|++.|+.|+.
T Consensus 59 ~y~~~L~~l~~rim~l~d~~~lq~iv~li~~t-G~-~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 59 AYLDELVELHRRLMTLRERHILQQIVNLIEET-GH-FHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp STHHHHHHHHHHHHTCCCCSSHHHHHHHHHTS-CC-EEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhc-Cc-eeeecccccceeeccCHHHHHHHHHHHH
Confidence 3567999999999999854 589999999953 33 3445689999999999999999998874
No 45
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=30.27 E-value=26 Score=23.55 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=20.7
Q ss_pred ChhHHHHHHHhhhhhHHHHHHhhhcccc
Q 006954 560 SPDKLYRATLLKNRFADTILKAKEKTLS 587 (624)
Q Consensus 560 ~~~k~~raa~l~~r~ad~i~ka~~~~~~ 587 (624)
||+. |..+|..|=.+.|+-||.|-|+
T Consensus 2 s~~e--Rq~~Lq~Rk~~mi~~ARrryl~ 27 (28)
T 3h8k_B 2 SADE--RQRMLVQRKDELLQQARKRFLN 27 (28)
T ss_dssp CHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 4554 4456999999999999998775
No 46
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=26.35 E-value=13 Score=39.69 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=44.6
Q ss_pred HHHHHHhhhhhHHHHHHhhhcccc-cCCCCChHHHHHHHHHHHHHHhhccc---ceecccccc
Q 006954 564 LYRATLLKNRFADTILKAKEKTLS-QGDKGDPEKLRREREELELQKRKGLT---FTINLTYAN 622 (624)
Q Consensus 564 ~~raa~l~~r~ad~i~ka~~~~~~-~~~~~dp~~~~~~~~e~e~~~~~~~~---~~~~~~~~~ 622 (624)
||+..|+|.=..|.+-+||||-+. ..=+.|+|.+..+++|+++...+||. .|+-+..+|
T Consensus 233 L~~VtlFkk~~~eF~~~~Re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~ 295 (392)
T 1u7l_A 233 LFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTA 295 (392)
T ss_dssp EEEEEEEGGGHHHHHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEhhhHHHHHHHHHHcCCccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999665 45678999888777777777666543 344444444
Done!