BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006955
(624 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 234/599 (39%), Positives = 366/599 (61%), Gaps = 3/599 (0%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
MR R EA +F +MP+ +V++N MI GY +NG + A LF++MPERD+ ++N +I
Sbjct: 75 MRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIK 134
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
G +++ N+ A+E+F+ M RDV +WN+M+SGY NG +D+A VF MP K+ VSWN +
Sbjct: 135 GYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNAL 194
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
+ A V +M+ A FK + SW ++ G V++ +IVEAR+ FD M +DV +WN
Sbjct: 195 LSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWN 254
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKT 240
+I GY +G + A LF + +D+ +W +++G + +R ++ A F +MPE E +
Sbjct: 255 TIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVS 314
Query: 241 WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV 300
WN++++ ++ ++ A + P N+++W +I GY + G++ A +F+ M RD
Sbjct: 315 WNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP 374
Query: 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ 360
W MI G ++ E L+ FVQM+ G + ++F+S L+ C+D+ L+LG+Q+H +
Sbjct: 375 VSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGR 434
Query: 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420
+K V NA++ MY +CG+I+ A F + DI+SWN++I G + HG+ E A
Sbjct: 435 LVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVA 494
Query: 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
L FE M+ KPDD T V VLSACS+ GLVD+GR YF M Y + P S HY C+VD
Sbjct: 495 LRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVD 554
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
LLGR GL+++A NL+ + E +WG LLGA R+H N ++ E A +++ +EP N
Sbjct: 555 LLGRAGLLEDAHNLMKNM---PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPEN 611
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPK 599
SG+Y++L+ +Y S GR D ++ +M++ GVKK PG SWI+I + H F GD HP+
Sbjct: 612 SGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPE 670
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/611 (35%), Positives = 349/611 (57%), Gaps = 36/611 (5%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
R +I EA+ LFD + +WN M+ GYF N
Sbjct: 29 RIGKIHEARKLFDSCDSKSISSWNSMVAGYFAN--------------------------- 61
Query: 62 LMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVI 121
LM D A+++FD M R++++WN ++SGY+ NG IDEA +VF MP ++VVSW ++
Sbjct: 62 LMPRD----ARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALV 117
Query: 122 GALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNL 181
V+ ++D+AES F +M ++ SWT+M+ G +++GRI +A KL++ +P KD A
Sbjct: 118 KGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTS 177
Query: 182 MIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTW 241
MI G G V A ++F +M +R + +W ++ G + R+D A F MPE E +W
Sbjct: 178 MIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSW 237
Query: 242 NSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVT 301
S++ ++NG +++A E P + + +I G + GE+ A +VF+ M R+
Sbjct: 238 TSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDA 297
Query: 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQA 361
W +I N E L F+ M++ G P T S+L++C+ L +L G+Q+HAQ
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQL 357
Query: 362 IKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKAL 421
++ + V++ ++TMY +CG + + L F P DII WNSII G A HG E+AL
Sbjct: 358 VRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEAL 417
Query: 422 ELFERMRLT-DFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
++F M L+ KP+++TFV LSACSYAG+V++G ++ M++ + ++P +AHY C+VD
Sbjct: 418 KVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVD 477
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
+LGR G +EAM +++ + +E VWG+LLGACR H+ + V E ++++E+EP N
Sbjct: 478 MLGRAGRFNEAMEMIDSM---TVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPEN 534
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGD-SSHPK 599
SG Y++L+ MY S GR D + MK V+K PGCSW ++ + H F G +SHP+
Sbjct: 535 SGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPE 594
Query: 600 FHRLRYLLNLL 610
+ +L+ L
Sbjct: 595 QESILKILDEL 605
Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 132/470 (28%), Positives = 236/470 (50%), Gaps = 21/470 (4%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
M+N I EA+ +FD MP+R+ V+W +++GY NG +D A LF +MPE++ ++ ++
Sbjct: 90 MKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLI 149
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
G +Q + A ++++ + +D + SMI G G +DEA +F M + V++W +
Sbjct: 150 GFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTM 209
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
+ R+D A F M + SWT M+ G V+ GRI +A +LF+ MP K V A N
Sbjct: 210 VTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACN 269
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLIN-GLVNSRRIDAAISYFKQMPETCEK 239
MI+G G + A +F M +R+ SW+ +I N ++A + +
Sbjct: 270 AMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRP 329
Query: 240 TWNSIISVL--------IRNGLVKEAHSYLEKYPYS-NIASWTNVIVGYFEMGEVGSAIK 290
T+ ++IS+L + +G K+ H+ L + + ++ + ++ Y + GE+ +
Sbjct: 330 TFPTLISILSVCASLASLHHG--KQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKL 387
Query: 291 VFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPS-PDNATFTSVLTICSDLP 349
+F+ ++D+ +WN +I G + LGEE LK F +M SG + P+ TF + L+ CS
Sbjct: 388 IFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAG 447
Query: 350 TLDLGRQIHAQAIKIARNQFTTVSNA-MITMYARCGNIQSALLEFSSVPIH-DIISWNSI 407
++ G +I+ + + T A M+ M R G A+ S+ + D W S+
Sbjct: 448 MVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSL 507
Query: 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRY 457
+ H + A F +L + +P++ + +L + YA QGR+
Sbjct: 508 LGACRTHSQLDVA--EFCAKKLIEIEPEN-SGTYILLSNMYAS---QGRW 551
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/599 (35%), Positives = 334/599 (55%), Gaps = 35/599 (5%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
R +I EA+ FD + + +WN ++ GYF NG +P+
Sbjct: 29 RIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNG-----------LPKE----------- 66
Query: 62 LMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVI 121
A+++FD M R+VV+WN ++SGY+ N +I EA VF MP ++VVSW ++
Sbjct: 67 ---------ARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMV 117
Query: 122 GALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNL 181
+ + AES F M R+ SWT+M GL+ +GRI +ARKL+D MP KDV A
Sbjct: 118 KGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTN 177
Query: 182 MIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTW 241
MI G G V A +F +M +R++ +W +I G + R+D A F+ MPE E +W
Sbjct: 178 MIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSW 237
Query: 242 NSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVT 301
S++ +G +++A + E P + + +IVG+ E+GE+ A +VF+LM RD
Sbjct: 238 TSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNA 297
Query: 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQA 361
W MI E L F QM++ G P + S+L++C+ L +L GRQ+HA
Sbjct: 298 TWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357
Query: 362 IKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKAL 421
++ + V++ ++TMY +CG + A L F DII WNSII G A HG E+AL
Sbjct: 358 VRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEAL 417
Query: 422 ELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDL 481
++F M + P+ +T + +L+ACSYAG +++G F+ M++K+ + P HY+C VD+
Sbjct: 418 KIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDM 477
Query: 482 LGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541
LGR G +D+AM L+ + I+ TVWGALLGAC+ H+ + + E+A +++ E EP+N+
Sbjct: 478 LGRAGQVDKAMELIESM---TIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNA 534
Query: 542 GVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGD-SSHPK 599
G Y++L+ + S + D + M+ N V K PGCSWI++ H+F G +HP+
Sbjct: 535 GTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPE 593
Score = 214 bits (546), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/461 (29%), Positives = 227/461 (49%), Gaps = 41/461 (8%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
++N I EA+N+F+ MP+R+ V+W M++GY + G + A LF +MPER+ ++ +
Sbjct: 90 IKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFG 149
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
GL+ + A++++D M V+DVV +MI G G +DEA +F M ++VV+W +
Sbjct: 150 GLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTM 209
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
I R+D+A F+ M + SWT M+ G GRI +A + F+ MP K V A N
Sbjct: 210 ITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACN 269
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQM-PETCEK 239
MI G+ + G + A +F M DRD +W+ +I A+ F QM +
Sbjct: 270 AMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRP 329
Query: 240 TWNSIISVLIRNGLV------KEAHSYLEKYPYSNIASWTNVIVG-YFEMGEVGSAIKVF 292
++ S+IS+L + ++ H++L + + + +V++ Y + GE+ A VF
Sbjct: 330 SFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVF 389
Query: 293 ELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLD 352
+ +++D+ +WN +I G + LGEE LK F +M SG P+ T ++LT CS L+
Sbjct: 390 DRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLE 449
Query: 353 LGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLA 412
G +I +S +F P + S + G A
Sbjct: 450 EGLEI----------------------------FESMESKFCVTPTVEHYSCTVDMLGRA 481
Query: 413 YHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVD 453
G +KA+EL E M + KPD + +L AC +D
Sbjct: 482 --GQVDKAMELIESMTI---KPDATVWGALLGACKTHSRLD 517
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/443 (24%), Positives = 194/443 (43%), Gaps = 40/443 (9%)
Query: 115 VSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAK 174
V+ + I L +++ A +F + + + SW +V+G G EAR+LFD+M +
Sbjct: 18 VNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSER 77
Query: 175 DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMP 234
+V +WN +++GY+ N + A ++F+ M +R++ SW ++ G + + A S F +MP
Sbjct: 78 NVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMP 137
Query: 235 ETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFEL 294
E E +W + LI +G + +A + P ++ + TN+I G G V A +F+
Sbjct: 138 ERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDE 197
Query: 295 MTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLG 354
M R+V W MI G +N+ + K F M P ++TS+L L G
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLFEVM----PEKTEVSWTSML-----LGYTLSG 248
Query: 355 RQIHAQA-IKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAY 413
R A+ ++ + NAMI + G I A F + D +W +I
Sbjct: 249 RIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYER 308
Query: 414 HGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGR----------------- 456
G+ +AL+LF +M+ +P + + +LS C+ + GR
Sbjct: 309 KGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYV 368
Query: 457 ------YYFDC---MKNKYFLQPRSAH----YTCVVDLLGRFGLIDEAMNLLNEIRADGI 503
Y C +K K S+ + ++ GL +EA+ + +E+ + G
Sbjct: 369 ASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGT 428
Query: 504 EVSPTVWGALLGACRIHNNIKVG 526
+ A+L AC ++ G
Sbjct: 429 MPNKVTLIAILTACSYAGKLEEG 451
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/608 (33%), Positives = 353/608 (58%), Gaps = 24/608 (3%)
Query: 28 IRGYFKNGFL------DNAMCLFNQMPERDMFTYNT---------VIAGLMQSDNVQGAK 72
+R Y+K + D ++ LFN + R +++ ++ +I L + + A+
Sbjct: 9 LRSYYKRSSVFPSSDNDRSVQLFNLV--RSIYSSSSRPRVPQPEWLIGELCKVGKIAEAR 66
Query: 73 EVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGM-PLKDVVSWNLVIGALVNCQRMD 131
++FDG+ RDVVTW +I+GY+ G + EA +F + K+VV+W ++ + +++
Sbjct: 67 KLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLS 126
Query: 132 LAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGC 191
+AE F+EM R+V SW M++G + GRI +A +LFD+MP +++ +WN M+ + G
Sbjct: 127 IAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGR 186
Query: 192 VGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRN 251
+ A +LF++M RD+ SW +++GL + ++D A F MPE +WN++I+ +N
Sbjct: 187 IDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQN 246
Query: 252 GLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLG 311
+ EA + P + ASW +I G+ E+ A +F+ M ++V W MI G
Sbjct: 247 NRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYV 306
Query: 312 ENDLGEEGLKFFVQMKESGP-SPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFT 370
EN EE L F +M G P+ T+ S+L+ CSDL L G+QIH K +
Sbjct: 307 ENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNE 366
Query: 371 TVSNAMITMYARCGNIQSALLEFSS--VPIHDIISWNSIICGLAYHGYAEKALELFERMR 428
V++A++ MY++ G + +A F + V D+ISWNS+I A+HG+ ++A+E++ +MR
Sbjct: 367 IVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMR 426
Query: 429 LTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLI 488
FKP +T++ +L ACS+AGLV++G +F + L R HYTC+VDL GR G +
Sbjct: 427 KHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRL 486
Query: 489 DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548
+ N +N D +S + +GA+L AC +HN + + + ++V+E +++G Y++++
Sbjct: 487 KDVTNFIN---CDDARLSRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMS 543
Query: 549 EMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLN 608
+Y + G+RE+A + +MKE G+KK+PGCSW+++ H+F+ GD SHP+F L +L+
Sbjct: 544 NIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDSILS 603
Query: 609 LLHTEIER 616
L ++ +
Sbjct: 604 DLRNKMRK 611
Score = 236 bits (603), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/403 (33%), Positives = 219/403 (54%), Gaps = 43/403 (10%)
Query: 4 ARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPER-DMFTYNTVIAGL 62
+I EA+ LFD +P+RD VTW +I GY K G + A LF+++ R ++ T+ +++G
Sbjct: 60 GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGY 119
Query: 63 MQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIG 122
++S + A+ +F M R+VV+WN+MI GY +G ID+AL +F MP +++VSWN ++
Sbjct: 120 LRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVK 179
Query: 123 ALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLM 182
ALV R+D A + F+ M RDV SWT MV+GL + G++ EAR+LFD MP +++ +WN M
Sbjct: 180 ALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAM 239
Query: 183 IAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWN 242
I GY N + A+ LFQ M +RD SW +I G + +R ++ A F +MPE +W
Sbjct: 240 ITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWT 299
Query: 243 SII----------------SVLIRNGLVK-----------------------EAHSYLEK 263
++I S ++R+G VK + H + K
Sbjct: 300 TMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISK 359
Query: 264 YPYSNIASWTNVIVG-YFEMGEVGSAIKVFE--LMTTRDVTVWNVMIFGLGENDLGEEGL 320
+ T+ ++ Y + GE+ +A K+F+ L+ RD+ WN MI + G+E +
Sbjct: 360 SVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAI 419
Query: 321 KFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK 363
+ + QM++ G P T+ ++L CS ++ G + ++
Sbjct: 420 EMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVR 462
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/657 (31%), Positives = 357/657 (54%), Gaps = 46/657 (7%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
RN +QEA+ +F +M R V+W MI Y +NG + A +F++MP R +YN +I
Sbjct: 62 RNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYNAMITA 121
Query: 62 LMQSD-NVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLK--DVVSWN 118
++++ ++ A E+F + ++ V++ +MI+G+V G DEA ++ P+K D V+ N
Sbjct: 122 MIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASN 181
Query: 119 LVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQA 178
+++ + + + A F+ M ++V S + MV+G + GRIV+AR LFD+M ++V
Sbjct: 182 VLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVIT 241
Query: 179 WNLMIAGYLDNGCVGVAEDLFQKMHD------------------RDLTSWKQ--LINGLV 218
W MI GY G LF +M RD +++ I+GLV
Sbjct: 242 WTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLV 301
Query: 219 NSRRID--------------------AAISYFKQMPETCEKTWNSIISVLIRNGLVKEAH 258
+ ++ A + F M +WNS+I+ L++ + EA+
Sbjct: 302 SRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAY 361
Query: 259 SYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEE 318
EK P ++ SWT++I G+ GE+ +++F +M +D W MI N EE
Sbjct: 362 ELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEE 421
Query: 319 GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMIT 378
L +F +M + P++ TF+SVL+ + L L G QIH + +K+ +V N++++
Sbjct: 422 ALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVS 481
Query: 379 MYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDIT 438
MY +CGN A FS + +I+S+N++I G +Y+G+ +KAL+LF + + +P+ +T
Sbjct: 482 MYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVT 541
Query: 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEI 498
F+ +LSAC + G VD G YF MK+ Y ++P HY C+VDLLGR GL+D+A NL++ +
Sbjct: 542 FLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTM 601
Query: 499 RADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRE 558
+ VWG+LL A + H + + E+A ++++ELEP+++ Y++L+++Y G+
Sbjct: 602 PC---KPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNR 658
Query: 559 DAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIE 615
D RI K +KK+PG SWI + H FL+GD S + + L ++ E+E
Sbjct: 659 DCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNLEEIGFTLKMIRKEME 715
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 127/466 (27%), Positives = 223/466 (47%), Gaps = 27/466 (5%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
+R + EA +F M ++ V+ + M+ GY K G + +A LF++M ER++ T+ +I
Sbjct: 188 LRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMID 247
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLID-----EALRVFHG----MPL 111
G ++ + +F M V NS + D E ++ HG MPL
Sbjct: 248 GYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQI-HGLVSRMPL 306
Query: 112 K-DVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDK 170
+ D+ N ++ M A++ F M +D SW ++ GLV+ +I EA +LF+K
Sbjct: 307 EFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEK 366
Query: 171 MPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYF 230
MP KD+ +W MI G+ G + +LF M ++D +W +I+ V++ + A+ +F
Sbjct: 367 MPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWF 426
Query: 231 KQM--PETCEK--TWNSIISVLIRNGLVKEA---HSYLEKYPYSNIASWTNVIVG-YFEM 282
+M E C T++S++S + E H + K N S N +V Y +
Sbjct: 427 HKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKC 486
Query: 283 GEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVL 342
G A K+F ++ ++ +N MI G N G++ LK F ++ SG P+ TF ++L
Sbjct: 487 GNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALL 546
Query: 343 TICSDLPTLDLGRQIHAQAIKIARNQFTTVSN--AMITMYARCGNIQSALLEFSSVPI-- 398
+ C + +DLG + + +++K + N + M+ + R G + A S++P
Sbjct: 547 SACVHVGYVDLGWK-YFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKP 605
Query: 399 HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLS 444
H + W S++ H + A EL + +L + +PD T VLS
Sbjct: 606 HSGV-WGSLLSASKTHLRVDLA-ELAAK-KLIELEPDSATPYVVLS 648
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 140/333 (42%), Gaps = 55/333 (16%)
Query: 242 NSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVT 301
NS IS RNG ++EA + + +I SW +I Y E G++ A +VF+ M R T
Sbjct: 54 NSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTT 113
Query: 302 VWNVMIFGLGEN--DLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHA 359
+N MI + +N DLG + + F + P + ++ +++T D ++A
Sbjct: 114 SYNAMITAMIKNKCDLG-KAYELFCDI----PEKNAVSYATMITGFVRAGRFDEAEFLYA 168
Query: 360 QAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEK 419
+ R+ + SN +++ Y R G A+ F + + +++S +S++ HGY
Sbjct: 169 ETPVKFRD--SVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMV-----HGY--- 218
Query: 420 ALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479
C +VD R FD M + + +T ++
Sbjct: 219 --------------------------CKMGRIVD-ARSLFDRMTERNVIT-----WTAMI 246
Query: 480 DLLGRFGLIDEAMNLLNEIRADG-IEVSPTVWGALLGACRIHNNIKVG-EIAGERVMELE 537
D + G ++ L +R +G ++V+ + ACR + G +I G ++
Sbjct: 247 DGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHG--LVSRM 304
Query: 538 PNNSGVYL--ILTEMYLSCGRREDAKRIFAQMK 568
P ++L L MY G +AK +F MK
Sbjct: 305 PLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMK 337
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/628 (34%), Positives = 334/628 (53%), Gaps = 43/628 (6%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQS 65
+++ + +FDKMPQR+ TWN ++ G K GFLD A LF MPERD T+N++++G Q
Sbjct: 71 LEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQH 130
Query: 66 DNVQGAKEVFDGMEVRDVV----TWNSMISGYVCNGLIDEALRV-FHGMPLKDVVSWNLV 120
D + A F M V ++ S++S C+GL D V H + K ++
Sbjct: 131 DRCEEALCYFAMMHKEGFVLNEYSFASVLSA--CSGLNDMNKGVQVHSLIAKSPFLSDVY 188
Query: 121 IG-ALVN----CQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKD 175
IG ALV+ C ++ A+ F EMG R+V SW ++ + G VEA +F M
Sbjct: 189 IGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESR 248
Query: 176 VQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE 235
V+ + +A + A + Q++H R + + K L N ++ S
Sbjct: 249 VEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDK-LRNDIILS--------------- 292
Query: 236 TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELM 295
N+ + + + +KEA + P N+ + T++I GY +A +F M
Sbjct: 293 ------NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKM 346
Query: 296 TTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGR 355
R+V WN +I G +N EE L F +K P + +F ++L C+DL L LG
Sbjct: 347 AERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGM 406
Query: 356 QIHAQAIK------IARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIIC 409
Q H +K V N++I MY +CG ++ L F + D +SWN++I
Sbjct: 407 QAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMII 466
Query: 410 GLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQ 469
G A +GY +ALELF M + KPD IT +GVLSAC +AG V++GR+YF M + +
Sbjct: 467 GFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVA 526
Query: 470 PRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIA 529
P HYTC+VDLLGR G ++EA +++ E+ ++ +WG+LL AC++H NI +G+
Sbjct: 527 PLRDHYTCMVDLLGRAGFLEEAKSMIEEM---PMQPDSVIWGSLLAACKVHRNITLGKYV 583
Query: 530 GERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHV 589
E+++E+EP+NSG Y++L+ MY G+ ED + M++ GV K+PGCSWI+I HV
Sbjct: 584 AEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHV 643
Query: 590 FLSGDSSHPKFHRLRYLLNLLHTEIERE 617
F+ D SHP+ ++ LL++L E+ E
Sbjct: 644 FMVKDKSHPRKKQIHSLLDILIAEMRPE 671
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 120/218 (55%), Gaps = 6/218 (2%)
Query: 242 NSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVT 301
N +I + G +++ +K P NI +W +V+ G ++G + A +F M RD
Sbjct: 59 NRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118
Query: 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQA 361
WN M+ G ++D EE L +F M + G + +F SVL+ CS L ++ G Q+H+
Sbjct: 119 TWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSL- 177
Query: 362 IKIARNQFTT---VSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAE 418
IA++ F + + +A++ MY++CGN+ A F + +++SWNS+I +G A
Sbjct: 178 --IAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAV 235
Query: 419 KALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGR 456
+AL++F+ M + +PD++T V+SAC+ + G+
Sbjct: 236 EALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQ 273
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 143/329 (43%), Gaps = 31/329 (9%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
+ +RI+EA+ +FD MP R+ + MI GY A +F +M ER++ ++N +IAG
Sbjct: 301 KCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAG 360
Query: 62 LMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYV--CNGLIDEALR-------VFHGMPLK 112
Q+ + A +F ++ V + + + C L + L + HG +
Sbjct: 361 YTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQ 420
Query: 113 -----DVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKL 167
D+ N +I V C ++ F++M RD SW M+ G + G EA +L
Sbjct: 421 SGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALEL 480
Query: 168 FDKMPAKDVQAWNLMIAGYLDN-GCVGVAED---LFQKMHDRDL------TSWKQLINGL 217
F +M + ++ + G L G G E+ F M RD + +++ L
Sbjct: 481 FREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSM-TRDFGVAPLRDHYTCMVDLL 539
Query: 218 VNSRRIDAAISYFKQMPETCEKT-WNSIISV--LIRNGLVKE--AHSYLEKYPYSNIASW 272
+ ++ A S ++MP + W S+++ + RN + + A LE P SN +
Sbjct: 540 GRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEP-SNSGPY 598
Query: 273 TNVIVGYFEMGEVGSAIKVFELMTTRDVT 301
+ Y E+G+ + V + M VT
Sbjct: 599 VLLSNMYAELGKWEDVMNVRKSMRKEGVT 627
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 46/243 (18%)
Query: 334 DNATFTSVLTIC--SDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALL 391
D++ F +L C S L + + R +HA IK + + N +I Y++CG+++
Sbjct: 18 DSSPFAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQ 76
Query: 392 EFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGL 451
F +P +I +WNS++ GL G+ ++A LF M D C++ +
Sbjct: 77 VFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERD-------------QCTWNSM 123
Query: 452 VDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWG 511
V F Q H C +EA+ + +G ++ +
Sbjct: 124 VSG------------FAQ----HDRC-----------EEALCYFAMMHKEGFVLNEYSFA 156
Query: 512 ALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL--ILTEMYLSCGRREDAKRIFAQMKE 569
++L AC N++ G + ++ P S VY+ L +MY CG DA+R+F +M +
Sbjct: 157 SVLSACSGLNDMNKG-VQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGD 215
Query: 570 NGV 572
V
Sbjct: 216 RNV 218
>sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2
SV=1
Length = 761
Score = 361 bits (926), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 216/650 (33%), Positives = 348/650 (53%), Gaps = 63/650 (9%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
+ + EA+ LF+ MP+R+ VT N M+ GY K ++ A LF +MP +++ ++ ++
Sbjct: 89 KTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTA 147
Query: 62 LMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVI 121
L + A E+FD M R+VV+WN++++G + NG +++A +VF MP +DVVSWN +I
Sbjct: 148 LCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMI 207
Query: 122 GALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNL 181
+ M+ A+ F +M ++V +WT MV G R G + EA +LF +MP +++ +W
Sbjct: 208 KGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTA 267
Query: 182 MIAGY--------------------------------LDNGCVGVAED---LFQKMH--- 203
MI+G+ L C G+ + L +++H
Sbjct: 268 MISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQV 327
Query: 204 --------DRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVK 255
D D K L++ +S I +A S + + ++ N II+ ++NG ++
Sbjct: 328 ISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDL--QSCNIIINRYLKNGDLE 385
Query: 256 EAHSYLEKY-PYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEND 314
A + E+ + SWT++I GY E G+V A +F+ + +D W VMI GL +N+
Sbjct: 386 RAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNE 445
Query: 315 LGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIAR--NQFTTV 372
L E M G P N+T++ +L+ LD G+ IH K + +
Sbjct: 446 LFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLIL 505
Query: 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDF 432
N++++MYA+CG I+ A F+ + D +SWNS+I GL++HG A+KAL LF+ M +
Sbjct: 506 QNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGK 565
Query: 433 KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAM 492
KP+ +TF+GVLSACS++GL+ +G F MK Y +QP HY ++DLLGR G + EA
Sbjct: 566 KPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAE 625
Query: 493 NLLNEIRADGIEVSP--TVWGALLGAC----RIHNNIKVGEIAGERVMELEPNNSGVYLI 546
++ + +P TV+GALLG C R + + E A R++EL+P N+ ++
Sbjct: 626 EFIS-----ALPFTPDHTVYGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVA 680
Query: 547 LTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSS 596
L +Y GR + K + +M GVKK PGCSW+ +N +VFLSGD S
Sbjct: 681 LCNVYAGLGRHDMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVFLSGDKS 730
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 148/516 (28%), Positives = 244/516 (47%), Gaps = 72/516 (13%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
+RN +++A+ +FD MP RD V+WN MI+GY +N ++ A LF M E+++ T+ +++
Sbjct: 180 IRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVY 239
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDV------ 114
G + +V+ A +F M R++V+W +MISG+ N L EAL +F M KDV
Sbjct: 240 GYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFLEMK-KDVDAVSPN 298
Query: 115 ----VSWNLVIGAL-VNCQRMD--------------------LAESYFKEMGAR------ 143
+S G L V +R+ LA+S +
Sbjct: 299 GETLISLAYACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASA 358
Query: 144 --------DVASWTIMVNGLVREGRIVEARKLFDKMPA-KDVQAWNLMIAGYLDNGCVGV 194
D+ S I++N ++ G + A LF+++ + D +W MI GYL+ G V
Sbjct: 359 QSLLNESFDLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSR 418
Query: 195 AEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLV 254
A LFQK+HD+D +W +I+GLV + A S M K NS SVL+ +
Sbjct: 419 AFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSA-- 476
Query: 255 KEAHSYLE--KYPYSNIASWT-----------NVIVGYFEMGEVGSAIKVFELMTTRDVT 301
A S L+ K+ + IA T +++ Y + G + A ++F M +D
Sbjct: 477 -GATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTV 535
Query: 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQA 361
WN MI GL + L ++ L F +M +SG P++ TF VL+ CS + G ++ +A
Sbjct: 536 SWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELF-KA 594
Query: 362 IKIARNQFTTVSN--AMITMYARCGNIQSALLEFSSVPI---HDIISWNSIICGLAYHGY 416
+K + + + +MI + R G ++ A S++P H + +CGL +
Sbjct: 595 MKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRDK 654
Query: 417 AEKALELFERMRLTDFKPDDITFVGVLSACS-YAGL 451
+ + MRL + P + G ++ C+ YAGL
Sbjct: 655 DAEGIAERAAMRLLELDP--VNAPGHVALCNVYAGL 688
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 156/558 (27%), Positives = 258/558 (46%), Gaps = 84/558 (15%)
Query: 30 GYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSM 89
G ++ GF + + ++ E + ++ + Q ++ VV W S+
Sbjct: 36 GSYRRGFSNEEALILRRLSEGGLVHARHLLDKIPQRGSIN------------RVVYWTSL 83
Query: 90 ISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWT 149
+S Y G +DEA +F MP +++V+ N ++ V C+RM+ A + F+EM ++V SWT
Sbjct: 84 LSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREM-PKNVVSWT 142
Query: 150 IMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTS 209
+M+ L +GR +A +LFD+MP ++V +WN ++ G + NG + A+ +F M RD+ S
Sbjct: 143 VMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVS 202
Query: 210 WKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNI 269
W +I G + + ++ A F M E TW S++ R G V+EA+ + P NI
Sbjct: 203 WNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNI 262
Query: 270 ASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKE- 328
SWT +I G+ W N+L E L F++MK+
Sbjct: 263 VSWTAMISGF----------------------AW---------NELYREALMLFLEMKKD 291
Query: 329 -SGPSPDNATFTSVLTICSDLPT--LDLGRQIHAQAIKIARNQFTTV------SNAMITM 379
SP+ T S+ C L LG Q+HAQ I N + TV + +++ M
Sbjct: 292 VDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVIS---NGWETVDHDGRLAKSLVHM 348
Query: 380 YARCGNIQSA--LLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI 437
YA G I SA LL S D+ S N II +G E+A LFER++ D +
Sbjct: 349 YASSGLIASAQSLLNES----FDLQSCNIIINRYLKNGDLERAETLFERVKSLH---DKV 401
Query: 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNE 497
++ ++ AG V + F + +K +T ++ L + L EA +LL++
Sbjct: 402 SWTSMIDGYLEAGDVSRAFGLFQKLHDK-----DGVTWTVMISGLVQNELFAEAASLLSD 456
Query: 498 IRADGIEVSPTVWGALLGACRIHNNIKVGE----IAGERVMELEPN----NSGVYLILTE 549
+ G++ + + LL + +N+ G+ + + +P+ NS L
Sbjct: 457 MVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNS-----LVS 511
Query: 550 MYLSCGRREDAKRIFAQM 567
MY CG EDA IFA+M
Sbjct: 512 MYAKCGAIEDAYEIFAKM 529
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 358 bits (918), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 223/644 (34%), Positives = 346/644 (53%), Gaps = 56/644 (8%)
Query: 25 NVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVV 84
N ++ Y K G+ +A LF++MP R F++NTV++ + ++ E FD + RD V
Sbjct: 53 NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSV 112
Query: 85 TWNSMISGYVCNGLIDEALRVFHGM------PLKDVVSWNLVIGALVNCQRM-DLAESYF 137
+W +MI GY G +A+RV M P + ++ L A C S+
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFI 172
Query: 138 KEMGAR-DVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAE 196
++G R +V+ ++N + G + A+ +FD+M +D+ +WN MIA ++ G + +A
Sbjct: 173 VKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAM 232
Query: 197 DLFQKMHDRDLTSWKQLINGLVNSRRID-AAISYFKQM-------PE---------TC-- 237
F++M +RD+ +W +I+G N R D A+ F +M P+ C
Sbjct: 233 AQFEQMAERDIVTWNSMISGF-NQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACAN 291
Query: 238 -EK---------------------TWNSIISVLIRNGLVKEAHSYLEKYPYSN--IASWT 273
EK N++IS+ R G V+ A +E+ + I +T
Sbjct: 292 LEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFT 351
Query: 274 NVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSP 333
++ GY ++G++ A +F + RDV W MI G ++ E + F M G P
Sbjct: 352 ALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRP 411
Query: 334 DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEF 393
++ T ++L++ S L +L G+QIH A+K +VSNA+ITMYA+ GNI SA F
Sbjct: 412 NSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAF 471
Query: 394 SSVPIH-DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLV 452
+ D +SW S+I LA HG+AE+ALELFE M + +PD IT+VGV SAC++AGLV
Sbjct: 472 DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLV 531
Query: 453 DQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGA 512
+QGR YFD MK+ + P +HY C+VDL GR GL+ EA + ++ IE WG+
Sbjct: 532 NQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM---PIEPDVVTWGS 588
Query: 513 LLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572
LL ACR+H NI +G++A ER++ LEP NSG Y L +Y +CG+ E+A +I MK+ V
Sbjct: 589 LLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRV 648
Query: 573 KKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIER 616
KKE G SWI++ HVF D +HP+ + + + + EI++
Sbjct: 649 KKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKK 692
Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 110/444 (24%), Positives = 195/444 (43%), Gaps = 66/444 (14%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQM-------PERDMF 53
M+ ++ A F++M +RD VTWN MI G+ + G+ A+ +F++M P+R F
Sbjct: 223 MQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDR--F 280
Query: 54 TYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKD 113
T +V++ + + K++ +VT ISG V N LI R
Sbjct: 281 TLASVLSACANLEKLCIGKQIHS-----HIVTTGFDISGIVLNALISMYSR--------- 326
Query: 114 VVSWNLVIGALVNCQRMDLAESYFKEMGARD--VASWTIMVNGLVREGRIVEARKLFDKM 171
C ++ A ++ G +D + +T +++G ++ G + +A+ +F +
Sbjct: 327 -------------CGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSL 373
Query: 172 PAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFK 231
+DV AW MI GY +G G A +LF+ M + +++ A++S+ K
Sbjct: 374 KDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGK 433
Query: 232 QMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKV 291
Q+ + K+ I SV + N L I Y + G + SA +
Sbjct: 434 QIHGSAVKS-GEIYSVSVSNAL----------------------ITMYAKAGNITSASRA 470
Query: 292 FELM-TTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPT 350
F+L+ RD W MI L ++ EE L+ F M G PD+ T+ V + C+
Sbjct: 471 FDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGL 530
Query: 351 LDLGRQIHAQAIKIARNQFTTVSN--AMITMYARCGNIQSALLEFSSVPIH-DIISWNSI 407
++ GRQ + +K T+S+ M+ ++ R G +Q A +PI D+++W S+
Sbjct: 531 VNQGRQ-YFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSL 589
Query: 408 ICGLAYHGYAEKALELFERMRLTD 431
+ H + ER+ L +
Sbjct: 590 LSACRVHKNIDLGKVAAERLLLLE 613
Score = 36.2 bits (82), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/108 (18%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 332 SPDNATFTSVLTICSDLPTLDLGRQ--------IHAQAIKIARNQFTTVSNAMITMYARC 383
+P + +++L +C++L + + +H + IK + N ++ +Y++
Sbjct: 3 APVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKT 62
Query: 384 GNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTD 431
G A F +P+ SWN+++ + G + E F+++ D
Sbjct: 63 GYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRD 110
>sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2
SV=1
Length = 656
Score = 358 bits (918), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 213/637 (33%), Positives = 325/637 (51%), Gaps = 91/637 (14%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
+R+ I EA+++F+K+ R+TVTWN MI GY K ++ A LF+ MP+RD+ T+NT+I+
Sbjct: 51 IRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMIS 110
Query: 61 GLMQSDNV---QGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSW 117
G + + + A+++FD M RD +WN+MISGY N I EAL +F MP ++ VSW
Sbjct: 111 GYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSW 170
Query: 118 NLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEA------------- 164
+ +I +D A F++M +D + +V GL++ R+ EA
Sbjct: 171 SAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSG 230
Query: 165 ------------------------RKLFDKMP---------------AKDVQAWNLMIAG 185
R LFD++P K+V +WN MI
Sbjct: 231 REDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKA 290
Query: 186 YLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSII 245
YL G V A LF +M DRD SW +I+G V+ R++ A + F +MP
Sbjct: 291 YLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPN---------- 340
Query: 246 SVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNV 305
++AHS W ++ GY +G V A FE + WN
Sbjct: 341 ---------RDAHS------------WNMMVSGYASVGNVELARHYFEKTPEKHTVSWNS 379
Query: 306 MIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIA 365
+I +N +E + F++M G PD T TS+L+ + L L LG Q+H +K
Sbjct: 380 IIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTV 439
Query: 366 RNQFTTVSNAMITMYARCGNIQSALLEFSSVPI-HDIISWNSIICGLAYHGYAEKALELF 424
V NA+ITMY+RCG I + F + + ++I+WN++I G A+HG A +AL LF
Sbjct: 440 IPD-VPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLF 498
Query: 425 ERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR 484
M+ P ITFV VL+AC++AGLVD+ + F M + Y ++P+ HY+ +V++
Sbjct: 499 GSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVTSG 558
Query: 485 FGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVY 544
G +EAM ++ + E TVWGALL ACRI+NN+ + +A E + LEP +S Y
Sbjct: 559 QGQFEEAMYIITSM---PFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPY 615
Query: 545 LILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWI 581
++L MY G ++A ++ M+ +KKE G SW+
Sbjct: 616 VLLYNMYADMGLWDEASQVRMNMESKRIKKERGSSWV 652
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/439 (24%), Positives = 184/439 (41%), Gaps = 56/439 (12%)
Query: 177 QAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPET 236
+A N + + +G + A D+F+K+ R+ +W +I+G V R ++ A F MP+
Sbjct: 41 RATNKELNQMIRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKR 100
Query: 237 CEKTWNSIISVLIRNG---LVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFE 293
TWN++IS + G ++EA ++ P + SW +I GY + +G A+ +FE
Sbjct: 101 DVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFE 160
Query: 294 LMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSP---------DNATFTSVLTI 344
M R+ W+ MI G +N + + F +M SP N + +
Sbjct: 161 KMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWV 220
Query: 345 CSDLPTLDLGRQIHAQA-------------IKIARNQFTTVS------------------ 373
+L GR+ A ++ AR F +
Sbjct: 221 LGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKN 280
Query: 374 ----NAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRL 429
N+MI Y + G++ SA L F + D ISWN++I G + E A LF M
Sbjct: 281 VVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPN 340
Query: 430 TDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLID 489
D ++ G S G V+ R+YF+ K+ + + ++ +
Sbjct: 341 RDAHSWNMMVSGYAS----VGNVELARHYFEKTPEKH-----TVSWNSIIAAYEKNKDYK 391
Query: 490 EAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549
EA++L + +G + P +LL A N+++G + V++ + V+ L
Sbjct: 392 EAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIPDVPVHNALIT 451
Query: 550 MYLSCGRREDAKRIFAQMK 568
MY CG +++RIF +MK
Sbjct: 452 MYSRCGEIMESRRIFDEMK 470
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 348 bits (894), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 197/567 (34%), Positives = 304/567 (53%), Gaps = 26/567 (4%)
Query: 57 TVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVS 116
+I + S + A+EVF+ + V + MI+GY + + +AL +F MP++DVVS
Sbjct: 40 VLICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVS 99
Query: 117 WNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDV 176
WN +I V C M+ A F EM R V SWT MVNG R G++ +A +LF +MP KD
Sbjct: 100 WNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDT 159
Query: 177 QAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPET 236
AWN M+ GYL G V A LF++M +++ SW +I GL + R A+ FK M
Sbjct: 160 AAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRC 219
Query: 237 CEKTWNSIISVLIR--------------NGLVKEAHSYLEKYPYSNIASWTNVIVGYFEM 282
C K+ + + +I +GL+ + E+Y +++ I Y
Sbjct: 220 CIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASL------ITFYANC 273
Query: 283 GEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVL 342
+G + KVF+ V VW ++ G N E+ L F M + P+ +TF S L
Sbjct: 274 KRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGL 333
Query: 343 TICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDII 402
CS L TLD G+++H A+K+ V N+++ MY+ GN+ A+ F + I+
Sbjct: 334 NSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIV 393
Query: 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCM 462
SWNSII G A HG + A +F +M + +PD+ITF G+LSACS+ G +++GR F M
Sbjct: 394 SWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYM 453
Query: 463 KNKY-FLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN 521
+ + + HYTC+VD+LGR G + EA L+ + ++ + VW ALL ACR+H+
Sbjct: 454 SSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMV---VKPNEMVWLALLSACRMHS 510
Query: 522 NIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWI 581
++ GE A + L+ +S Y++L+ +Y S GR + ++ +MK+NG+ K+PG SW+
Sbjct: 511 DVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWV 570
Query: 582 QINDGGHVFLSGDSSHPK--FHRLRYL 606
I H F SGD H + +L +L
Sbjct: 571 VIRGKKHEFFSGDQPHCSRIYEKLEFL 597
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 141/562 (25%), Positives = 248/562 (44%), Gaps = 88/562 (15%)
Query: 5 RIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQ 64
RI EA+ +F+++P + MI GY ++ L +A+ LF++MP RD+ ++N++I+G ++
Sbjct: 50 RIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVE 109
Query: 65 SDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGAL 124
++ A ++FD M R VV+W +M++G +G +D+A R+F+ MP+KD +WN ++
Sbjct: 110 CGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGY 169
Query: 125 VNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKM------------- 171
+ ++D A FK+M ++V SWT M+ GL + R EA LF M
Sbjct: 170 LQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFT 229
Query: 172 ---------PA--KDVQAWNL---------------MIAGYLDNGCVGVAEDLFQKMHDR 205
PA +Q L +I Y + +G + +F +
Sbjct: 230 CVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHE 289
Query: 206 DLTSWKQLINGLVNSRRIDAAISYFKQMPETC----EKTWNSIISVLIRNGLV---KEAH 258
+ W L++G +++ + A+S F M + T+ S ++ G + KE H
Sbjct: 290 QVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMH 349
Query: 259 SYLEKYPYSNIASWTN-VIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGE 317
K A N ++V Y + G V A+ VF + + + WN +I G ++ G+
Sbjct: 350 GVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGK 409
Query: 318 EGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIH---AQAIKIARNQFTTVSN 374
F QM PD TFT +L+ CS L+ GR++ + I + +
Sbjct: 410 WAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYT- 468
Query: 375 AMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP 434
M+ + RCG ++ +A EL ERM + KP
Sbjct: 469 CMVDILGRCGKLK-------------------------------EAEELIERMVV---KP 494
Query: 435 DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNL 494
+++ ++ +LSAC VD+G + N SA Y + ++ G L
Sbjct: 495 NEMVWLALLSACRMHSDVDRGEKAAAAIFN--LDSKSSAAYVLLSNIYASAGRWSNVSKL 552
Query: 495 LNEIRADGIEVSP-TVWGALLG 515
+++ +GI P + W + G
Sbjct: 553 RVKMKKNGIMKKPGSSWVVIRG 574
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 338 bits (868), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 207/648 (31%), Positives = 332/648 (51%), Gaps = 61/648 (9%)
Query: 25 NVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEV--RD 82
N +I Y K+ L+ A LF+++ E D T+++G S ++ A+ VF+ V RD
Sbjct: 53 NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRD 112
Query: 83 VVTWNSMISGYVCNGLIDEALRVFHGMPLK----DVVSWNLVIGALVNCQRMDLAESYFK 138
V +N+MI+G+ N A+ +F M + D ++ V+ L + F
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFH 172
Query: 139 EMGARDVASW-TIMVNGLVR--------EGRIVEARKLFDKMPAKDVQAWNLMIAGYLDN 189
+ A + T + N LV + ARK+FD++ KD ++W M+ GY+ N
Sbjct: 173 AAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKN 232
Query: 190 GCVGVAEDLFQKMHDR-DLTSWKQLINGLVNSRRIDAAISYFKQMP----ETCEKTW--- 241
G + E+L + M D L ++ +I+G VN A+ ++M E E T+
Sbjct: 233 GYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSV 292
Query: 242 -------------------------------NSIISVLIRNGLVKEAHSYLEKYPYSNIA 270
NS++S+ + G EA + EK P ++
Sbjct: 293 IRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLV 352
Query: 271 SWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESG 330
SW ++ GY G +G A +F+ M +++ W +MI GL EN GEEGLK F MK G
Sbjct: 353 SWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREG 412
Query: 331 PSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSAL 390
P + F+ + C+ L G+Q HAQ +KI + + NA+ITMYA+CG ++ A
Sbjct: 413 FEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEAR 472
Query: 391 LEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAG 450
F ++P D +SWN++I L HG+ +A++++E M +PD IT + VL+ACS+AG
Sbjct: 473 QVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAG 532
Query: 451 LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT-- 508
LVDQGR YFD M+ Y + P + HY ++DLL R G +A +++ + + PT
Sbjct: 533 LVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVI-----ESLPFKPTAE 587
Query: 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568
+W ALL CR+H N+++G IA +++ L P + G Y++L+ M+ + G+ E+ R+ M+
Sbjct: 588 IWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMR 647
Query: 569 ENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIER 616
+ GVKKE CSWI++ H FL D+SHP+ + L L E+ R
Sbjct: 648 DRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRR 695
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 337 bits (863), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 188/516 (36%), Positives = 283/516 (54%), Gaps = 36/516 (6%)
Query: 87 NSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVA 146
N +I+ V +G ID ALRVFHGM K+ +
Sbjct: 65 NKIIARCVRSGDIDGALRVFHGMRAKNTI------------------------------- 93
Query: 147 SWTIMVNGLVRE-GRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR 205
+W ++ G+ ++ R++EA +LFD++P D ++N+M++ Y+ N A+ F +M +
Sbjct: 94 TWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK 153
Query: 206 DLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYP 265
D SW +I G ++ A F M E E +WN++IS I G +++A + + P
Sbjct: 154 DAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAP 213
Query: 266 YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT-RDVTVWNVMIFGLGENDLGEEGLKFFV 324
+ +WT +I GY + +V A +F+ MT +++ WN MI G EN E+GLK F
Sbjct: 214 VRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFR 273
Query: 325 QMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCG 384
M E G P+++ +S L CS+L L LGRQIH K T ++I+MY +CG
Sbjct: 274 AMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCG 333
Query: 385 NIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLS 444
+ A F + D+++WN++I G A HG A+KAL LF M +PD ITFV VL
Sbjct: 334 ELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLL 393
Query: 445 ACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIE 504
AC++AGLV+ G YF+ M Y ++P+ HYTC+VDLLGR G ++EA+ L IR+
Sbjct: 394 ACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKL---IRSMPFR 450
Query: 505 VSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIF 564
V+G LLGACR+H N+++ E A E++++L N+ Y+ L +Y S R ED R+
Sbjct: 451 PHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVR 510
Query: 565 AQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKF 600
+MKE+ V K PG SWI+I + H F S D HP+
Sbjct: 511 KRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPEL 546
Score = 175 bits (444), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 114/405 (28%), Positives = 204/405 (50%), Gaps = 36/405 (8%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKN-GFLDNAMCLFNQMPERDMFTYNTVI 59
+R+ I A +F M ++T+TWN ++ G K+ + A LF+++PE D F+YN ++
Sbjct: 72 VRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIML 131
Query: 60 AGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNL 119
+ +++ N + A+ FD M +D +WN+MI+GY G +++A +F+ M K+ VSWN
Sbjct: 132 SCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNA 191
Query: 120 VIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPA-KDVQA 178
+I + C ++ A +FK R V +WT M+ G ++ ++ A +F M K++
Sbjct: 192 MISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVT 251
Query: 179 WNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCE 238
WN MI+GY++N LF+ M + + NS + +A+ C
Sbjct: 252 WNAMISGYVENSRPEDGLKLFRAMLEEGIRP---------NSSGLSSALL-------GC- 294
Query: 239 KTWNSIISVLIRNGLVKEAHSYLEKYPYSN-IASWTNVIVGYFEMGEVGSAIKVFELMTT 297
S +S L L ++ H + K N + + T++I Y + GE+G A K+FE+M
Sbjct: 295 ----SELSAL---QLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKK 347
Query: 298 RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLG--- 354
+DV WN MI G ++ ++ L F +M ++ PD TF +VL C+ +++G
Sbjct: 348 KDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAY 407
Query: 355 --RQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP 397
+ ++ + +T M+ + R G ++ AL S+P
Sbjct: 408 FESMVRDYKVEPQPDHYT----CMVDLLGRAGKLEEALKLIRSMP 448
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 180/392 (45%), Gaps = 67/392 (17%)
Query: 4 ARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLM 63
+R+ EA LFD++P+ DT ++N+M+ Y +N + A F++MP +D ++NT+I G
Sbjct: 107 SRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYA 166
Query: 64 QSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGA 123
+ ++ A+E+F M ++ V+WN+MISGY+ G +++A F P++ VV+W +I
Sbjct: 167 RRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITG 226
Query: 124 LVNCQRMDLAESYFKEMGA-RDVASWTIMVNGLVREGRIVEARKLFDKMPAK-------- 174
+ ++++LAE+ FK+M +++ +W M++G V R + KLF M +
Sbjct: 227 YMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSG 286
Query: 175 -------------------------------DVQAWNLMIAGYLDNGCVGVAEDLFQKMH 203
DV A +I+ Y G +G A LF+ M
Sbjct: 287 LSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK 346
Query: 204 DRDLTSWKQLINGLVNSRRIDAAISYFKQMPET-CEKTWNSIISVLIRNGLVKEAHSYLE 262
+D+ +W +I+G D A+ F++M + W + ++VL+
Sbjct: 347 KKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLL------------- 393
Query: 263 KYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKF 322
N A N+ + YFE S ++ +++ D + M+ LG EE LK
Sbjct: 394 ---ACNHAGLVNIGMAYFE-----SMVRDYKVEPQPD--HYTCMVDLLGRAGKLEEALKL 443
Query: 323 FVQMKESGPSPDNATFTSVLTICSDLPTLDLG 354
M P A F ++L C ++L
Sbjct: 444 IRSMPF---RPHAAVFGTLLGACRVHKNVELA 472
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 325 bits (832), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 201/663 (30%), Positives = 333/663 (50%), Gaps = 77/663 (11%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLF----NQMPERDMFTY- 55
M+ + ++ + +FD+M +R+ VTW +I GY +N D + LF N+ + + FT+
Sbjct: 139 MKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFA 198
Query: 56 ----------------------------------NTVIAGLMQSDNVQGAKEVFDGMEVR 81
N++I ++ NV+ A+ +FD EV+
Sbjct: 199 AALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 258
Query: 82 DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDV----VSWNLVIGALVNCQRMDLAESYF 137
VVTWNSMISGY NGL EAL +F+ M L V S+ VI N L E F
Sbjct: 259 SVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN-----LKELRF 313
Query: 138 KEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAED 197
E V + + + +R +V K + A + + + GCVG
Sbjct: 314 TEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDA---------LRLFKEIGCVG---- 360
Query: 198 LFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLV--- 254
++ SW +I+G + + + A+ F +M + SV++ V
Sbjct: 361 --------NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP 412
Query: 255 KEAHSYLEKYPYSNIAS-WTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEN 313
E H+ + K Y ++ T ++ Y ++G+V A KVF + +D+ W+ M+ G +
Sbjct: 413 SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQT 472
Query: 314 DLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDL-PTLDLGRQIHAQAIKIARNQFTTV 372
E +K F ++ + G P+ TF+S+L +C+ ++ G+Q H AIK + V
Sbjct: 473 GETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCV 532
Query: 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDF 432
S+A++TMYA+ GNI+SA F D++SWNS+I G A HG A KAL++F+ M+
Sbjct: 533 SSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 592
Query: 433 KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAM 492
K D +TF+GV +AC++AGLV++G YFD M + P H +C+VDL R G +++AM
Sbjct: 593 KMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAM 652
Query: 493 NLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552
++ + T+W +L ACR+H ++G +A E+++ ++P +S Y++L+ MY
Sbjct: 653 KVIENMPNPA---GSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYA 709
Query: 553 SCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHT 612
G ++ ++ M E VKKEPG SWI++ + + FL+GD SHP ++ L L T
Sbjct: 710 ESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLST 769
Query: 613 EIE 615
++
Sbjct: 770 RLK 772
Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 106/467 (22%), Positives = 203/467 (43%), Gaps = 67/467 (14%)
Query: 142 ARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQK 201
A VA I G V R+ A LFDK P +D +++ ++ G+ +G A+ LF
Sbjct: 24 ANGVAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLN 83
Query: 202 MHDRDLTSWKQLINGLVNSRRIDAAI--SYFKQMPETCEKTWNSIISVLIRNGLVKEAHS 259
+H + +D +I S K C++ + ++ H
Sbjct: 84 IHRLGM--------------EMDCSIFSSVLKVSATLCDELFG------------RQLHC 117
Query: 260 YLEKYPY-SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEE 318
K+ + +++ T+++ Y + KVF+ M R+V W +I G N + +E
Sbjct: 118 QCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDE 177
Query: 319 GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMIT 378
L F++M+ G P++ TF + L + ++ G Q+H +K ++ VSN++I
Sbjct: 178 VLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLIN 237
Query: 379 MYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDIT 438
+Y +CGN++ A + F + +++WNS+I G A +G +AL +F MRL + + +
Sbjct: 238 LYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESS 297
Query: 439 FVGVLSACS-----------YAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGL 487
F V+ C+ + +V G + FD + L + T ++D L F
Sbjct: 298 FASVIKLCANLKELRFTEQLHCSVVKYG-FLFD-QNIRTALMVAYSKCTAMLDALRLFKE 355
Query: 488 I----------------------DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKV 525
I +EA++L +E++ G+ + + +L A + I
Sbjct: 356 IGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPV---ISP 412
Query: 526 GEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572
E+ + V +S V L + Y+ G+ E+A ++F+ + + +
Sbjct: 413 SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDI 459
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 118/493 (23%), Positives = 211/493 (42%), Gaps = 66/493 (13%)
Query: 30 GYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFD-----GMEVRDVV 84
G + L NA LF++ P RD +Y +++ G + Q AK +F GME+ D
Sbjct: 36 GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEM-DCS 94
Query: 85 TWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARD 144
++S++ V L DE + G ++CQ + F + D
Sbjct: 95 IFSSVLK--VSATLCDE------------------LFGRQLHCQCIKFG---FLD----D 127
Query: 145 VASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHD 204
V+ T +V+ ++ + RK+FD+M ++V W +I+GY N LF +M +
Sbjct: 128 VSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQN 187
Query: 205 RDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKY 264
NS AA+ + E + +V+++NGL K
Sbjct: 188 EGTQP---------NSFTFAAALGVLAE--EGVGGRGLQVHTVVVKNGLDK-------TI 229
Query: 265 PYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFV 324
P SN ++I Y + G V A +F+ + V WN MI G N L E L F
Sbjct: 230 PVSN-----SLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFY 284
Query: 325 QMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCG 384
M+ + ++F SV+ +C++L L Q+H +K + A++ Y++C
Sbjct: 285 SMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCT 344
Query: 385 NIQSALLEFSSVP-IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVL 443
+ AL F + + +++SW ++I G + E+A++LF M+ +P++ T+ +L
Sbjct: 345 AMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVIL 404
Query: 444 SACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGI 503
+A ++ + +K Y + S T ++D + G ++EA + + I I
Sbjct: 405 TALP---VISPSEVHAQVVKTNY--ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDI 459
Query: 504 EVSPTVWGALLGA 516
W A+L
Sbjct: 460 ----VAWSAMLAG 468
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 325 bits (832), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 197/648 (30%), Positives = 338/648 (52%), Gaps = 38/648 (5%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNA---MCLFNQMPERDMFTYNTV 58
+ ++ +A ++F+ + +D V+WN +I GY +NG + ++ M LF +M +D+
Sbjct: 61 KCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYT 120
Query: 59 IAGL------MQSDNV--QGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMP 110
+AG+ +QS V Q V D+ S++ Y GL+++ L+VF MP
Sbjct: 121 LAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMP 180
Query: 111 LKDVVSWNLVIGALVNCQRMDLAESYF------KEMGARDVASWTIMVNGL-----VREG 159
++ +W+ ++ R++ A F KE G+ +T +++ L V G
Sbjct: 181 ERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLG 240
Query: 160 RIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVN 219
R + + + + V N ++ Y + A +F DR+ +W ++ G
Sbjct: 241 RQIHCITIKNGLLGF-VALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQ 299
Query: 220 SRRIDAAISYFKQM-PETCEKTWNSIISVL--------IRNGLVKEAHSYLEKYPYS-NI 269
+ A+ F +M + + +I+ VL + G K+ HS+L K + ++
Sbjct: 300 NGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEG--KQLHSFLLKLGFERHL 357
Query: 270 ASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKES 329
+ T ++ Y + G + A K F+ + RDV +W +I G +N EE L + +MK +
Sbjct: 358 FATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTA 417
Query: 330 GPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA 389
G P++ T SVL CS L TL+LG+Q+H IK + +A+ TMY++CG+++
Sbjct: 418 GIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDG 477
Query: 390 LLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYA 449
L F P D++SWN++I GL+++G ++ALELFE M +PDD+TFV ++SACS+
Sbjct: 478 NLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHK 537
Query: 450 GLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTV 509
G V++G +YF+ M ++ L P+ HY C+VDLL R G + EA I + I+ +
Sbjct: 538 GFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEF---IESANIDHGLCL 594
Query: 510 WGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569
W LL AC+ H ++G AGE++M L S Y+ L+ +Y + GR D +R++ M+
Sbjct: 595 WRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRA 654
Query: 570 NGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIERE 617
NGV KE GCSWI++ + HVF+ GD+ HP + L+ L+ ++ E
Sbjct: 655 NGVSKEVGCSWIELKNQYHVFVVGDTMHPMIEETKDLVCLVSRQMIEE 702
Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 113/454 (24%), Positives = 202/454 (44%), Gaps = 65/454 (14%)
Query: 150 IMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVG---VAEDLFQKMHDRD 206
++VN + G++ +A +F+ + KDV +WN +I GY NG + LF++M +D
Sbjct: 54 VLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQD 113
Query: 207 LTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKY-P 265
+ + G+ + S L + + ++AH+ + K
Sbjct: 114 ILPNAYTLAGIFKAE------------------------SSLQSSTVGRQAHALVVKMSS 149
Query: 266 YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLK---F 322
+ +I T+++ Y + G V +KVF M R+ W+ M+ G EE +K
Sbjct: 150 FGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNL 209
Query: 323 FVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYAR 382
F++ KE G D FT+VL+ + + LGRQIH IK F +SNA++TMY++
Sbjct: 210 FLREKEEGSDSD-YVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSK 268
Query: 383 CGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGV 442
C ++ A F S + I+W++++ G + +G + +A++LF RM KP + T VGV
Sbjct: 269 CESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGV 328
Query: 443 LSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLI-------------- 488
L+ACS +++G+ + F + A T +VD+ + G +
Sbjct: 329 LNACSDICYLEEGKQLHSFLLKLGFERHLFA-TTALVDMYAKAGCLADARKGFDCLQERD 387
Query: 489 -----------------DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG-EIAG 530
+EA+ L ++ GI + ++L AC +++G ++ G
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447
Query: 531 ERVMELEPNNSGVYLILTEMYLSCGRREDAKRIF 564
+ + L+ MY CG ED +F
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVF 481
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 124/294 (42%), Gaps = 34/294 (11%)
Query: 205 RDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKY 264
+ LT Q N LV R + I + TC + N +++ + G + +AHS
Sbjct: 19 KKLTHHSQQRN-LVAGRAVHGQI--IRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAI 75
Query: 265 PYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFV 324
++ SW ++I GY + G + S+ V +L F
Sbjct: 76 ICKDVVSWNSLITGYSQNGGISSSYTVMQL----------------------------FR 107
Query: 325 QMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCG 384
+M+ P+ T + S L + +GRQ HA +K++ V +++ MY + G
Sbjct: 108 EMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAG 167
Query: 385 NIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFER-MRLTDFKPD-DITFVGV 442
++ L F+ +P + +W++++ G A G E+A+++F +R + D D F V
Sbjct: 168 LVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAV 227
Query: 443 LSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLN 496
LS+ + V GR C+ K L A +V + + ++EA + +
Sbjct: 228 LSSLAATIYVGLGR-QIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFD 280
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 333 PDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLE 392
P +T LT S L GR +H Q I+ + +N ++ YA+CG + A
Sbjct: 12 PHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSI 71
Query: 393 FSSVPIHDIISWNSIICGLAYHGYAEKA---LELFERMRLTDFKPDDITFVGVLSA 445
F+++ D++SWNS+I G + +G + ++LF MR D P+ T G+ A
Sbjct: 72 FNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKA 127
>sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3
SV=1
Length = 695
Score = 320 bits (821), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 190/628 (30%), Positives = 332/628 (52%), Gaps = 58/628 (9%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
R+ ++ A+NLFD+MP R+ +WN MI GY +G ++ F+ MPERD +++N V++G
Sbjct: 74 RSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSG 133
Query: 62 LMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLK-DVVSWNLV 120
++ + A+ +F+ M +DVVT NS++ GY+ NG +EALR+F + D ++ V
Sbjct: 134 FAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAITLTTV 193
Query: 121 IGA-------------------------------LVN----CQRMDLAESYFKEMGARDV 145
+ A LVN C + +A +++ D
Sbjct: 194 LKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDD 253
Query: 146 ASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR 205
S + +++G GR+ E+R LFD+ + V WN MI+GY+ N A LF +M +
Sbjct: 254 HSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNE 313
Query: 206 ---DLTSWKQLINGLVNSRRIDAAISYFKQMP-ETCEKTWNSIISVLIRNGLV---KEAH 258
D + +IN + ++ KQM C+ + I +++ + L+ +
Sbjct: 314 TREDSRTLAAVINACIGLGFLETG----KQMHCHACK--FGLIDDIVVASTLLDMYSKCG 367
Query: 259 SYLEKYP-YSNIASWTNVIVG-----YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGE 312
S +E +S + S+ +++ YF G + A +VFE + + + WN M G +
Sbjct: 368 SPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQ 427
Query: 313 NDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTV 372
N E L++F QM + D + +SV++ C+ + +L+LG Q+ A+A + + V
Sbjct: 428 NGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVV 487
Query: 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDF 432
S+++I +Y +CG ++ F ++ D + WNS+I G A +G +A++LF++M +
Sbjct: 488 SSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGI 547
Query: 433 KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAM 492
+P ITF+ VL+AC+Y GLV++GR F+ MK + P H++C+VDLL R G ++EA+
Sbjct: 548 RPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAI 607
Query: 493 NLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552
NL+ E+ D V ++W ++L C + +G+ A E+++ELEP NS Y+ L+ ++
Sbjct: 608 NLVEEMPFD---VDGSMWSSILRGCVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFA 664
Query: 553 SCGRREDAKRIFAQMKENGVKKEPGCSW 580
+ G E + + M+EN V K PG SW
Sbjct: 665 TSGDWESSALVRKLMRENNVTKNPGSSW 692
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/529 (23%), Positives = 226/529 (42%), Gaps = 55/529 (10%)
Query: 83 VVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA 142
V+ N ++ Y +G + A +F MP ++ SWN +I +N + +F M
Sbjct: 62 VIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPE 121
Query: 143 RDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKM 202
RD SW ++V+G + G + AR+LF+ MP KDV N ++ GY+ NG A LF+++
Sbjct: 122 RDGYSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFKEL 181
Query: 203 H-DRDLTSWKQLINGLVNSRRIDAAISYFKQM----PETCEKTWNSIISVLIRNGLVKEA 257
+ D + ++ + Q+ E K +S+++V + G ++ A
Sbjct: 182 NFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMA 241
Query: 258 HSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGE 317
LE+ + S + +I GY G V + +F+ + R V +WN MI G N++
Sbjct: 242 SYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKM 301
Query: 318 EGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMI 377
E L F +M+ D+ T +V+ C L L+ G+Q+H A K V++ ++
Sbjct: 302 EALVLFNEMRNE-TREDSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLL 360
Query: 378 TMYARCGNIQSALLEFSSVPIHD-------------------------------IISWNS 406
MY++CG+ A FS V +D +ISWNS
Sbjct: 361 DMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNS 420
Query: 407 IICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKY 466
+ G + +G + LE F +M D D+++ V+SAC+ ++ G F
Sbjct: 421 MTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVF-ARATIV 479
Query: 467 FLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNN---- 522
L + ++DL + G ++ + + + ++ W +++ +
Sbjct: 480 GLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTM----VKSDEVPWNSMISGYATNGQGFEA 535
Query: 523 ---IKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568
K +AG R P ++LT CG E+ +++F MK
Sbjct: 536 IDLFKKMSVAGIR-----PTQITFMVVLTACNY-CGLVEEGRKLFESMK 578
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 313 bits (802), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 213/671 (31%), Positives = 324/671 (48%), Gaps = 85/671 (12%)
Query: 6 IQEAQNLFDKMPQRDT--VTWNVMIRGYFKNGFLDNAMCLFNQM------PERDMFTY-- 55
+ A +L + P D WN +IR Y NG + + LF M P+ F +
Sbjct: 75 LSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVF 134
Query: 56 -------------------------------NTVIAGLMQSDNVQGAKEVFDGMEVRDVV 84
N ++A + ++ A++VFD M V DVV
Sbjct: 135 KACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVV 194
Query: 85 TWNSMISGYVCNGLIDEALRVFHGMP-----LKDVVSWNLVIGALVNCQRMDLAESYFKE 139
+WNS+I Y G AL +F M D ++ ++ L C + S K+
Sbjct: 195 SWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNIT---LVNVLPPCASLG-THSLGKQ 250
Query: 140 MGARDVASWTI--------MVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGC 191
+ V S I +V+ + G + EA +F M KDV +WN M+AGY G
Sbjct: 251 LHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGR 310
Query: 192 VGVAEDLFQKMHDR----DLTSWKQLINGLVNSRRIDAAISYFKQMPETC----EKTWNS 243
A LF+KM + D+ +W I+G A+ +QM + E T S
Sbjct: 311 FEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLIS 370
Query: 244 IISVLIRNGLV---KEAHSYLEKYPY---SNIASWTNVIVG-----YFEMGEVGSAIKVF 292
++S G + KE H Y KYP N N+++ Y + +V +A +F
Sbjct: 371 VLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMF 430
Query: 293 ELMTT--RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESG--PSPDNATFTSVLTICSDL 348
+ ++ RDV W VMI G ++ + L+ +M E P+ T + L C+ L
Sbjct: 431 DSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASL 490
Query: 349 PTLDLGRQIHAQAIKIARNQFTT-VSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSI 407
L +G+QIHA A++ +N VSN +I MYA+CG+I A L F ++ + ++W S+
Sbjct: 491 AALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSL 550
Query: 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF 467
+ G HGY E+AL +F+ MR FK D +T + VL ACS++G++DQG YF+ MK +
Sbjct: 551 MTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFG 610
Query: 468 LQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGE 527
+ P HY C+VDLLGR G ++ A+ L+ E+ +E P VW A L CRIH +++GE
Sbjct: 611 VSPGPEHYACLVDLLGRAGRLNAALRLIEEMP---MEPPPVVWVAFLSCCRIHGKVELGE 667
Query: 528 IAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGG 587
A E++ EL N+ G Y +L+ +Y + GR +D RI + M+ GVKK PGCSW++ G
Sbjct: 668 YAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGT 727
Query: 588 HVFLSGDSSHP 598
F GD +HP
Sbjct: 728 TTFFVGDKTHP 738
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 117/498 (23%), Positives = 194/498 (38%), Gaps = 104/498 (20%)
Query: 151 MVNGLVREGRIVEARKLFDKMPAKD--VQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLT 208
+++ + G + A L + P D V WN +I Y DNGC LF MH T
Sbjct: 65 LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124
Query: 209 SWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSN 268
+ FK E +R G A S + + SN
Sbjct: 125 PDNYTFPFV------------FKACGEISS----------VRCGESAHALSLVTGF-ISN 161
Query: 269 IASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQM-K 327
+ ++ Y + A KVF+ M+ DV WN +I + + L+ F +M
Sbjct: 162 VFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTN 221
Query: 328 ESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387
E G PDN T +VL C+ L T LG+Q+H A+ Q V N ++ MYA+CG +
Sbjct: 222 EFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMD 281
Query: 388 SALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMR------------------- 428
A FS++ + D++SWN+++ G + G E A+ LFE+M+
Sbjct: 282 EANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYA 341
Query: 429 ----------------LTDFKPDDITFVGVLSACSYAGLVDQG--------RYYFDCMKN 464
+ KP+++T + VLS C+ G + G +Y D KN
Sbjct: 342 QRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKN 401
Query: 465 KY----------------------------FLQPRS---AHYTCVVDLLGRFGLIDEAMN 493
+ L P+ +T ++ + G ++A+
Sbjct: 402 GHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALE 461
Query: 494 LLNEIRADGIEVSPTVW--GALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL--ILTE 549
LL+E+ + + P + L AC +++G+ + + N +++ L +
Sbjct: 462 LLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLID 521
Query: 550 MYLSCGRREDAKRIFAQM 567
MY CG DA+ +F M
Sbjct: 522 MYAKCGSISDARLVFDNM 539
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 137/324 (42%), Gaps = 44/324 (13%)
Query: 254 VKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTV--WNVMIFGLG 311
VK H L + + +++I Y +G + A+ + D V WN +I G
Sbjct: 44 VKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG 103
Query: 312 ENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT 371
+N + L F M +PDN TF V C ++ ++ G HA ++
Sbjct: 104 DNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVF 163
Query: 372 VSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTD 431
V NA++ MY+RC ++ A F + + D++SWNSII A G + ALE+F RM +
Sbjct: 164 VGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMT-NE 222
Query: 432 F--KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLID 489
F +PD+IT V VL C+ G G+ C + C+VD+ + G++D
Sbjct: 223 FGCRPDNITLVNVLPPCASLGTHSLGK-QLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMD 281
Query: 490 EAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549
EA + + + + W A+ +AG
Sbjct: 282 EANTVFSNMSVKDV----VSWNAM--------------VAG------------------- 304
Query: 550 MYLSCGRREDAKRIFAQMKENGVK 573
Y GR EDA R+F +M+E +K
Sbjct: 305 -YSQIGRFEDAVRLFEKMQEEKIK 327
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 310 bits (795), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 180/566 (31%), Positives = 316/566 (55%), Gaps = 25/566 (4%)
Query: 71 AKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMP----LKDVVSWNLVIGALVN 126
A VF ++ +++ WN+M G+ + AL+++ M L + ++ V+ +
Sbjct: 87 AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146
Query: 127 CQRMDLAES---YFKEMGAR-DVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLM 182
+ + + ++G D+ T +++ V+ GR+ +A K+FDK P +DV ++ +
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTAL 206
Query: 183 IAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETC----E 238
I GY G + A+ LF ++ +D+ SW +I+G + A+ FK M +T E
Sbjct: 207 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266
Query: 239 KTWNSIISVLIRNG---LVKEAHSYLEKYPY-SNIASWTNVIVGYFEMGEVGSAIKVFEL 294
T +++S ++G L ++ H +++ + + SN+ +I Y + GE+ +A +FE
Sbjct: 267 STMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER 326
Query: 295 MTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLG 354
+ +DV WN +I G +L +E L F +M SG +P++ T S+L C+ L +D+G
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 386
Query: 355 RQIHAQAIKIAR--NQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLA 412
R IH K + +++ ++I MYA+CG+I++A F+S+ + SWN++I G A
Sbjct: 387 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA 446
Query: 413 YHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRS 472
HG A+ + +LF RMR +PDDITFVG+LSACS++G++D GR+ F M Y + P+
Sbjct: 447 MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKL 506
Query: 473 AHYTCVVDLLGRFGLID--EAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAG 530
HY C++DLLG GL E M + E+ DG+ +W +LL AC++H N+++GE
Sbjct: 507 EHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGV-----IWCSLLKACKMHGNVELGESFA 561
Query: 531 ERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVF 590
E ++++EP N G Y++L+ +Y S GR + + A + + G+KK PGCS I+I+ H F
Sbjct: 562 ENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEF 621
Query: 591 LSGDSSHPKFHRLRYLLNLLHTEIER 616
+ GD HP+ + +L + +E+
Sbjct: 622 IIGDKFHPRNREIYGMLEEMEVLLEK 647
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 163/325 (50%), Gaps = 18/325 (5%)
Query: 51 DMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMP 110
D++ + ++I+ +Q+ ++ A +VFD RDVV++ ++I GY G I+ A ++F +P
Sbjct: 168 DLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIP 227
Query: 111 LKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDV----ASWTIMVNGLVREGRIVEARK 166
+KDVVSWN +I A FK+M +V ++ +V+ + G I R+
Sbjct: 228 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 287
Query: 167 LF----DKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRR 222
+ D +++ N +I Y G + A LF+++ +D+ SW LI G +
Sbjct: 288 VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNL 347
Query: 223 IDAAISYFKQMPETCEK----TWNSIISVLIRNGLV---KEAHSYLEK--YPYSNIASW- 272
A+ F++M + E T SI+ G + + H Y++K +N +S
Sbjct: 348 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 407
Query: 273 TNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPS 332
T++I Y + G++ +A +VF + + ++ WN MIFG + + F +M++ G
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQ 467
Query: 333 PDNATFTSVLTICSDLPTLDLGRQI 357
PD+ TF +L+ CS LDLGR I
Sbjct: 468 PDDITFVGLLSACSHSGMLDLGRHI 492
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 146/344 (42%), Gaps = 89/344 (25%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
++N R+++A +FDK P RD V++ +I+GY G+++NA LF+++P +D+ ++N +I+
Sbjct: 180 VQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMIS 239
Query: 61 GLMQSDNVQGAKEVFDGMEV--------------------------RDVVTW-------- 86
G ++ N + A E+F M R V W
Sbjct: 240 GYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGS 299
Query: 87 -----NSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEM- 140
N++I Y G ++ A +F +P KDV+SWN +IG + A F+EM
Sbjct: 300 NLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML 359
Query: 141 ---------------------GARDVASW-------------------TIMVNGLVREGR 160
GA D+ W T +++ + G
Sbjct: 360 RSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGD 419
Query: 161 IVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMH----DRDLTSWKQLING 216
I A ++F+ + K + +WN MI G+ +G + DLF +M D ++ L++
Sbjct: 420 IEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSA 479
Query: 217 LVNSRRIDAAISYFKQMPETCEKT-----WNSIISVLIRNGLVK 255
+S +D F+ M + + T + +I +L +GL K
Sbjct: 480 CSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFK 523
Score = 40.0 bits (92), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Query: 322 FFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMI---T 378
F S P D+ L++ + TL R IHAQ IKI + + +I
Sbjct: 17 FHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCI 76
Query: 379 MYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDIT 438
+ + A+ F ++ +++ WN++ G A AL+L+ M P+ T
Sbjct: 77 LSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYT 136
Query: 439 FVGVLSACSYAGLVDQGR 456
F VL +C+ + +G+
Sbjct: 137 FPFVLKSCAKSKAFKEGQ 154
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 308 bits (790), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 197/642 (30%), Positives = 333/642 (51%), Gaps = 34/642 (5%)
Query: 4 ARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLM 63
+I LFD++ Q+D V WNVM+ GY K G LD+ + F+ M D + N V +
Sbjct: 187 GKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVM-RMDQISPNAVTFDCV 245
Query: 64 QSDNVQGAKEVFD-GMEVRDVVTW----------NSMISGYVCNGLIDEALRVFHGMPLK 112
S V +K + D G+++ +V NS++S Y G D+A ++F M
Sbjct: 246 LS--VCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRA 303
Query: 113 DVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMP 172
D V+WN +I V M+ + ++F EM + V I + L+ E + ++
Sbjct: 304 DTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIH 363
Query: 173 --------AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRID 224
+ D+ + +I Y V +A+++F + + D+ + +I+G +++
Sbjct: 364 CYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYI 423
Query: 225 AAISYFKQMPETC----EKTWNSI---ISVLIRNGLVKEAHSYLEKYPYSNIASW-TNVI 276
++ F+ + + E T SI I +L+ L +E H ++ K + N + VI
Sbjct: 424 DSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVI 483
Query: 277 VGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNA 336
Y + G + A ++FE ++ RD+ WN MI ++D + F QM SG D
Sbjct: 484 DMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCV 543
Query: 337 TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSV 396
+ ++ L+ C++LP+ G+ IH IK + + +I MYA+CGN+++A+ F ++
Sbjct: 544 SISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTM 603
Query: 397 PIHDIISWNSIICGLAYHGYAEKALELFERM-RLTDFKPDDITFVGVLSACSYAGLVDQG 455
+I+SWNSII HG + +L LF M + +PD ITF+ ++S+C + G VD+G
Sbjct: 604 KEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEG 663
Query: 456 RYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLG 515
+F M Y +QP+ HY CVVDL GR G + EA +++ VWG LLG
Sbjct: 664 VRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEA---YETVKSMPFPPDAGVWGTLLG 720
Query: 516 ACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKE 575
ACR+H N+++ E+A ++M+L+P+NSG Y++++ + + E ++ + MKE V+K
Sbjct: 721 ACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKI 780
Query: 576 PGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIERE 617
PG SWI+IN H+F+SGD +HP+ + LLN L E+ E
Sbjct: 781 PGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLE 822
Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 142/602 (23%), Positives = 251/602 (41%), Gaps = 89/602 (14%)
Query: 24 WNVMIRGYFKNGFLDNAMCLFNQM----PERDMFTYNTVIAGLMQSDNVQGAKEVFD--- 76
WN +I + +NG L+ A+ + +M D+ T+ ++ + N +G + D
Sbjct: 106 WNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVS 165
Query: 77 --GMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAE 134
GM+ + V +S+I Y+ G ID ++F + KD V WN+++ C +D
Sbjct: 166 SLGMDCNEFVA-SSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVI 224
Query: 135 SYFKEM-------------------GARDVASWTIMVNGLV------------------- 156
F M ++ + + ++GLV
Sbjct: 225 KGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMY 284
Query: 157 -REGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLIN 215
+ GR +A KLF M D WN MI+GY+ +G + + LT + ++I+
Sbjct: 285 SKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSG-----------LMEESLTFFYEMIS 333
Query: 216 GLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYS-NIASWTN 274
V + AI++ +P +S K+ H Y+ ++ S +I +
Sbjct: 334 SGV----LPDAITFSSLLPS---------VSKFENLEYCKQIHCYIMRHSISLDIFLTSA 380
Query: 275 VIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD 334
+I YF+ V A +F + DV V+ MI G N L + L+ F + + SP+
Sbjct: 381 LIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPN 440
Query: 335 NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFS 394
T S+L + L L LGR++H IK + + A+I MYA+CG + A F
Sbjct: 441 EITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFE 500
Query: 395 SVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQ 454
+ DI+SWNS+I A A+++F +M ++ D ++ LSAC+
Sbjct: 501 RLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESF 560
Query: 455 GRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL 514
G+ M K+ L + ++D+ + G + AMN+ ++ I W +++
Sbjct: 561 GKAIHGFMI-KHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNI----VSWNSII 615
Query: 515 GACRIHNNIKVGEIAGERVME---LEPNNSGVYLILTEMYLSC---GRREDAKRIFAQMK 568
AC H +K ++E + P+ + E+ SC G ++ R F M
Sbjct: 616 AACGNHGKLKDSLCLFHEMVEKSGIRPDQ----ITFLEIISSCCHVGDVDEGVRFFRSMT 671
Query: 569 EN 570
E+
Sbjct: 672 ED 673
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 38/354 (10%)
Query: 248 LIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEM-GEVGSAIKVFELMTTRDVTV--WN 304
L+R G K+ H++L S + I+G + M G K+F + R ++ WN
Sbjct: 50 LLRQG--KQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWN 107
Query: 305 VMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKI 364
+I N L + L F+ +M G SPD +TF ++ C L + +
Sbjct: 108 SIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSL 167
Query: 365 ARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELF 424
+ V++++I Y G I F V D + WN ++ G A G + ++ F
Sbjct: 168 GMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGF 227
Query: 425 ERMRLTDFKPDDITFVGVLSACSYAGLVDQG-----------------------RYYFDC 461
MR+ P+ +TF VLS C+ L+D G Y C
Sbjct: 228 SVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKC 287
Query: 462 MK----NKYFL---QPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL 514
+ +K F + + + C++ + GL++E++ E+ + G+ + +LL
Sbjct: 288 GRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLL 347
Query: 515 GACRIHNNIKVGEIAGERVMELEPNNSGVYLI--LTEMYLSCGRREDAKRIFAQ 566
+ N++ + +M + ++L L + Y C A+ IF+Q
Sbjct: 348 PSVSKFENLEYCKQIHCYIMR-HSISLDIFLTSALIDAYFKCRGVSMAQNIFSQ 400
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 101/260 (38%), Gaps = 33/260 (12%)
Query: 341 VLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH- 399
+L CS+ L G+Q+HA I + + + ++ MYA CG+ F + +
Sbjct: 41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRR 100
Query: 400 -DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC----SYAGL--- 451
I WNSII +G +AL + +M PD TF ++ AC ++ G+
Sbjct: 101 SSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFL 160
Query: 452 --------VDQGRYYFDCMKNKYF---------------LQPRSAHYTCVVDLLGRFGLI 488
+D + + Y LQ + +++ + G +
Sbjct: 161 SDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGAL 220
Query: 489 DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG-EIAGERVMELEPNNSGVYLIL 547
D + + +R D I + + +L C I +G ++ G V+ + L
Sbjct: 221 DSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSL 280
Query: 548 TEMYLSCGRREDAKRIFAQM 567
MY CGR +DA ++F M
Sbjct: 281 LSMYSKCGRFDDASKLFRMM 300
>sp|Q9LRV9|PP228_ARATH Pentatricopeptide repeat-containing protein At3g13880
OS=Arabidopsis thaliana GN=PCMP-E89 PE=2 SV=1
Length = 748
Score = 308 bits (788), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 202/658 (30%), Positives = 311/658 (47%), Gaps = 83/658 (12%)
Query: 9 AQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPER----DMFTYN-------- 56
A+ LFD+MP+R+ +++N +I GY + GF + AM LF + E D FTY
Sbjct: 101 ARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGE 160
Query: 57 -------------TVIAGLMQS--------------DNVQGAKEVFDGMEVRDVVTWNSM 89
V+ GL Q + A +FD + RD V+WNS+
Sbjct: 161 RCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSL 220
Query: 90 ISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAES----------YFKE 139
ISGYV G +E L + M + +G+++ ++L E Y +
Sbjct: 221 ISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAK 280
Query: 140 MGAR-DVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLD-----NGCVG 193
+G D+ T +++ + G + EA KLF MP+K+V +N MI+G+L +
Sbjct: 281 LGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASS 340
Query: 194 VAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE-TCEKTWNSIISVLIRNG 252
A LF M R L + ++ + + Y +Q+ C+ + S I +
Sbjct: 341 EAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQS--DEFIGSA 398
Query: 253 LVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGE 312
L++ Y MG ++ F + +D+ W MI +
Sbjct: 399 LIEL----------------------YALMGSTEDGMQCFASTSKQDIASWTSMIDCHVQ 436
Query: 313 NDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTV 372
N+ E F Q+ S P+ T + +++ C+D L G QI AIK + FT+V
Sbjct: 437 NEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGIDAFTSV 496
Query: 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDF 432
+ I+MYA+ GN+ A F V D+ +++++I LA HG A +AL +FE M+
Sbjct: 497 KTSSISMYAKSGNMPLANQVFIEVQNPDVATYSAMISSLAQHGSANEALNIFESMKTHGI 556
Query: 433 KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAM 492
KP+ F+GVL AC + GLV QG YF CMKN Y + P H+TC+VDLLGR G + +A
Sbjct: 557 KPNQQAFLGVLIACCHGGLVTQGLKYFQCMKNDYRINPNEKHFTCLVDLLGRTGRLSDAE 616
Query: 493 NLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552
NL I + G + P W ALL +CR++ + +G+ ER+MELEP SG Y++L +Y
Sbjct: 617 NL---ILSSGFQDHPVTWRALLSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYN 673
Query: 553 SCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLL 610
G A+ + M++ GVKKEP SWI I + H F D SHP + +L +
Sbjct: 674 DSGVNSSAEEVRELMRDRGVKKEPALSWIVIGNQTHSFAVADLSHPSSQMIYTMLETM 731
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 167/377 (44%), Gaps = 34/377 (9%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
+ ++ +A +LFD+ +RD V+WN +I GY + G + + L +M RD T G
Sbjct: 195 KCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVGAAEEPLNLLAKM-HRDGLNLTTYALG 253
Query: 62 LMQSDNVQGAKEVF--DGMEVR----------DVVTWNSMISGYVCNGLIDEALRVFHGM 109
+ E F GM + D+V +++ Y NG + EA+++F M
Sbjct: 254 SVLKACCINLNEGFIEKGMAIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLM 313
Query: 110 PLKDVVSWNLVIGALVNCQRM-DLAES----YFKEMGARDV----ASWTIMVNGLVREGR 160
P K+VV++N +I + + D A S F +M R + +++++++
Sbjct: 314 PSKNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKT 373
Query: 161 IVEARKLFDKMPAKDVQAWNLMIAGYLD-NGCVGVAED---LFQKMHDRDLTSWKQLING 216
+ R++ + + Q+ + + ++ +G ED F +D+ SW +I+
Sbjct: 374 LEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSMIDC 433
Query: 217 LVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASW 272
V + ++++A F+Q+ + + +S+++ A S E+ S I ++
Sbjct: 434 HVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGIDAF 493
Query: 273 TNV----IVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKE 328
T+V I Y + G + A +VF + DV ++ MI L ++ E L F MK
Sbjct: 494 TSVKTSSISMYAKSGNMPLANQVFIEVQNPDVATYSAMISSLAQHGSANEALNIFESMKT 553
Query: 329 SGPSPDNATFTSVLTIC 345
G P+ F VL C
Sbjct: 554 HGIKPNQQAFLGVLIAC 570
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 140/347 (40%), Gaps = 46/347 (13%)
Query: 279 YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATF 338
Y + E+G A ++F+ M R++ +N +I G + E+ ++ F++ +E+ D T+
Sbjct: 92 YCKCRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTY 151
Query: 339 TSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI 398
L C + LDLG +H + +Q + N +I MY++CG + A+ F
Sbjct: 152 AGALGFCGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDE 211
Query: 399 HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY---AGLVDQG 455
D +SWNS+I G G AE+ L L +M VL AC G +++G
Sbjct: 212 RDQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKG 271
Query: 456 RYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLN------------------- 496
C K ++ T ++D+ + G + EA+ L +
Sbjct: 272 -MAIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQ 330
Query: 497 -----------------EIRADGIEVSPTVWGALLGACRIHNNIKVG-EIAGERVMELEP 538
+++ G+E SP+ + +L AC ++ G +I
Sbjct: 331 MDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQ 390
Query: 539 NNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQIND 585
++ + L E+Y G ED + FA K+ SW + D
Sbjct: 391 SDEFIGSALIELYALMGSTEDGMQCFA-----STSKQDIASWTSMID 432
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 118/283 (41%), Gaps = 47/283 (16%)
Query: 221 RRIDAAISYFKQMPETCEKTWNSIISVLIRNGL----------VKEAHSYLEKYPYSNIA 270
R + A F +MPE ++NS+IS + G +EA+ L+K+ Y+
Sbjct: 96 RELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGAL 155
Query: 271 SWT----------------------------NVIVG-YFEMGEVGSAIKVFELMTTRDVT 301
+ NV++ Y + G++ A+ +F+ RD
Sbjct: 156 GFCGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQV 215
Query: 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICS---DLPTLDLGRQIH 358
WN +I G EE L +M G + SVL C + ++ G IH
Sbjct: 216 SWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIH 275
Query: 359 AQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHG--- 415
K+ V A++ MYA+ G+++ A+ FS +P +++++N++I G
Sbjct: 276 CYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEIT 335
Query: 416 --YAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGR 456
+ +A +LF M+ +P TF VL ACS A ++ GR
Sbjct: 336 DEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGR 378
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 103/261 (39%), Gaps = 48/261 (18%)
Query: 353 LGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLA 412
LG+ H IK + N + N ++ MY +C + A F +P +IIS+NS+I G
Sbjct: 65 LGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIISFNSLISGYT 124
Query: 413 YHGYAEKALELFERMRLTDFKPDDITFVGVLSAC-------------------------- 446
G+ E+A+ELF R + K D T+ G L C
Sbjct: 125 QMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVF 184
Query: 447 ---------SYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNE 497
S G +DQ FD + + ++ R G +E +NLL +
Sbjct: 185 LINVLIDMYSKCGKLDQAMSLFDRCDER-----DQVSWNSLISGYVRVGAAEEPLNLLAK 239
Query: 498 IRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG------VYLILTEMY 551
+ DG+ ++ G++L AC I N+ G I + G V L +MY
Sbjct: 240 MHRDGLNLTTYALGSVLKACCI--NLNEGFIEKGMAIHCYTAKLGMEFDIVVRTALLDMY 297
Query: 552 LSCGRREDAKRIFAQMKENGV 572
G ++A ++F+ M V
Sbjct: 298 AKNGSLKEAIKLFSLMPSKNV 318
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/288 (18%), Positives = 126/288 (43%), Gaps = 29/288 (10%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDN-----AMCLFNQMPERDMFTYN 56
+N ++EA LF MP ++ VT+N MI G+ + + + A LF M R +
Sbjct: 299 KNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRRGLEPSP 358
Query: 57 TVIAGLMQSDNVQGAKEVFDGMEVRDVVTWN----------SMISGYVCNGLIDEALRVF 106
+ + ++++ AK + G ++ ++ N ++I Y G ++ ++ F
Sbjct: 359 STFSVVLKA--CSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCF 416
Query: 107 HGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVA----SWTIMVNGLVREGRIV 162
+D+ SW +I V ++++ A F+++ + + + ++M++ +
Sbjct: 417 ASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFAALS 476
Query: 163 EARKLFDKMPAKDVQAWNLM----IAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLV 218
++ + A+ + I+ Y +G + +A +F ++ + D+ ++ +I+ L
Sbjct: 477 SGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQNPDVATYSAMISSLA 536
Query: 219 NSRRIDAAISYFKQMP-ETCEKTWNSIISVLI---RNGLVKEAHSYLE 262
+ A++ F+ M + + + VLI GLV + Y +
Sbjct: 537 QHGSANEALNIFESMKTHGIKPNQQAFLGVLIACCHGGLVTQGLKYFQ 584
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 305 bits (780), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 192/641 (29%), Positives = 318/641 (49%), Gaps = 81/641 (12%)
Query: 9 AQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQM------PERDM---------- 52
A+++F M QRD VT+N +I G + G+ + AM LF +M P+ +
Sbjct: 342 AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 401
Query: 53 ------------------FTYNTVIAGLM-----QSDNVQGAKEVFDGMEVRDVVTWNSM 89
F N I G + + +++ A + F EV +VV WN M
Sbjct: 402 DGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM 461
Query: 90 ISGYVCNGLIDE---ALRVFHGMPLKDVV----SWNLVIGALVNCQRMDLAESYFKEMGA 142
+ Y GL+D+ + R+F M ++++V ++ ++ + ++L E ++
Sbjct: 462 LVAY---GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK 518
Query: 143 RDVA----SWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDL 198
+ +++++ + G++ A + + KDV +W MIAGY A
Sbjct: 519 TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTT 578
Query: 199 FQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAH 258
F++M DR + S + GL N+ A + K+ + + S S
Sbjct: 579 FRQMLDRGIRSDEV---GLTNAVSACAGLQALKEGQQIHAQACVSGFS------------ 623
Query: 259 SYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEE 318
P+ N ++ Y G++ + FE D WN ++ G ++ EE
Sbjct: 624 ---SDLPFQNA-----LVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEE 675
Query: 319 GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMIT 378
L+ FV+M G +N TF S + S+ + G+Q+HA K + T V NA+I+
Sbjct: 676 ALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALIS 735
Query: 379 MYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDIT 438
MYA+CG+I A +F V + +SWN+II + HG+ +AL+ F++M ++ +P+ +T
Sbjct: 736 MYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVT 795
Query: 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEI 498
VGVLSACS+ GLVD+G YF+ M ++Y L P+ HY CVVD+L R GL+ A + E+
Sbjct: 796 LVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEM 855
Query: 499 RADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRE 558
I+ VW LL AC +H N+++GE A ++ELEP +S Y++L+ +Y + ++
Sbjct: 856 ---PIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLY-AVSKKW 911
Query: 559 DAKRIFAQ-MKENGVKKEPGCSWIQINDGGHVFLSGDSSHP 598
DA+ + Q MKE GVKKEPG SWI++ + H F GD +HP
Sbjct: 912 DARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHP 952
Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 147/620 (23%), Positives = 267/620 (43%), Gaps = 66/620 (10%)
Query: 9 AQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNV 68
A +FD+MP+R TWN MI+ + LF +M ++ +G++++
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEA--C 196
Query: 69 QGAKEVFDGME----------VRD-VVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSW 117
+G FD +E +RD V N +I Y NG +D A RVF G+ LKD SW
Sbjct: 197 RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSW 256
Query: 118 NLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMP----- 172
+I L + A F +M + + ++ + +E+ ++ +++
Sbjct: 257 VAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 316
Query: 173 ---AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISY 229
+ D N +++ Y G + AE +F M RD ++ LINGL + A+
Sbjct: 317 LGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 376
Query: 230 FKQMP----ETCEKTWNSIISVLIRNGLV---KEAHSYLEKYPYSNIASWTNVIVG-YFE 281
FK+M E T S++ +G + ++ H+Y K +++ ++ Y +
Sbjct: 377 FKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAK 436
Query: 282 MGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSV 341
++ +A+ F +V +WNVM+ G D + F QM+ P+ T+ S+
Sbjct: 437 CADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 496
Query: 342 LTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA---LLEFSSVPI 398
L C L L+LG QIH+Q IK V + +I MYA+ G + +A L+ F+
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG--- 553
Query: 399 HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGR-- 456
D++SW ++I G + + +KAL F +M + D++ +SAC+ + +G+
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613
Query: 457 ---------------------YYFDCMKNK----YFLQPRSAH---YTCVVDLLGRFGLI 488
Y C K + F Q + + +V + G
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 673
Query: 489 DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMEL-EPNNSGVYLIL 547
+EA+ + + +GI+ + +G+ + A N+K G+ + + + + V L
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 733
Query: 548 TEMYLSCGRREDAKRIFAQM 567
MY CG DA++ F ++
Sbjct: 734 ISMYAKCGSISDAEKQFLEV 753
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 132/507 (26%), Positives = 230/507 (45%), Gaps = 50/507 (9%)
Query: 17 PQRDTVTWNVMIRGYFK-NGFLDNAMCLFNQMPERDMFTYNTVIAGLMQ----SDNVQGA 71
P T+ W ++ G K NG LD L +Q+ + + + + L ++ GA
Sbjct: 82 PNHQTLKW--LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139
Query: 72 KEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVV-SWNLVIGALVNCQRM 130
+VFD M R + TWN MI LI E +F M ++V + G L C+
Sbjct: 140 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGG 199
Query: 131 DLAESYFKEMGAR----DVASWTIMVNGLV----REGRIVEARKLFDKMPAKDVQAWNLM 182
+A +++ AR + T++ N L+ R G + AR++FD + KD +W M
Sbjct: 200 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 259
Query: 183 IAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWN 242
I+G N C A LF M+ + G++ + F + C+K
Sbjct: 260 ISGLSKNECEAEAIRLFCDMY----------VLGIMPTPYA------FSSVLSACKK--- 300
Query: 243 SIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVG-YFEMGEVGSAIKVFELMTTRDVT 301
I S+ I L H + K +S+ N +V YF +G + SA +F M+ RD
Sbjct: 301 -IESLEIGEQL----HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAV 355
Query: 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQA 361
+N +I GL + GE+ ++ F +M G PD+ T S++ CS TL G+Q+HA
Sbjct: 356 TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYT 415
Query: 362 IKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKAL 421
K+ + A++ +YA+C +I++AL F + +++ WN ++ +
Sbjct: 416 TKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSF 475
Query: 422 ELFERMRLTDFKPDDITFVGVLSACSYAGLVDQG-RYYFDCMKNKYFLQPRSAHYTC--V 478
+F +M++ + P+ T+ +L C G ++ G + + +K + L Y C +
Sbjct: 476 RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA----YVCSVL 531
Query: 479 VDLLGRFGLIDEAMNLLNEIRADGIEV 505
+D+ + G +D A ++L IR G +V
Sbjct: 532 IDMYAKLGKLDTAWDIL--IRFAGKDV 556
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 130/322 (40%), Gaps = 64/322 (19%)
Query: 4 ARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPER------------- 50
++ A ++ + +D V+W MI GY + F D A+ F QM +R
Sbjct: 539 GKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAV 598
Query: 51 --------------------------DMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVV 84
D+ N ++ + ++ + F+ E D +
Sbjct: 599 SACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNI 658
Query: 85 TWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNC----QRMDLAESYFKEM 140
WN+++SG+ +G +EALRVF M + + + N G+ V M + +
Sbjct: 659 AWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVI 718
Query: 141 GARDVASWTIMVNGLV----REGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAE 196
S T + N L+ + G I +A K F ++ K+ +WN +I Y +G A
Sbjct: 719 TKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEAL 778
Query: 197 DLFQKMHDRDLTSWKQLINGLVNSRR----IDAAISYFKQM---------PETCEKTWNS 243
D F +M ++ + G++++ +D I+YF+ M PE +
Sbjct: 779 DSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPE----HYVC 834
Query: 244 IISVLIRNGLVKEAHSYLEKYP 265
++ +L R GL+ A ++++ P
Sbjct: 835 VVDMLTRAGLLSRAKEFIQEMP 856
Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 136/325 (41%), Gaps = 64/325 (19%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMP----ERDMFTYNT 57
R +I+E+ F++ D + WN ++ G+ ++G + A+ +F +M + + FT+ +
Sbjct: 638 RCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGS 697
Query: 58 VIAGLMQSDNVQGAKEV-----------------------------------FDGMEVRD 82
+ ++ N++ K+V F + ++
Sbjct: 698 AVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKN 757
Query: 83 VVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNL-VIGALVNCQRMDLAE---SYFK 138
V+WN++I+ Y +G EAL F M +V ++ ++G L C + L + +YF+
Sbjct: 758 EVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFE 817
Query: 139 EMGARDVAS-----WTIMVNGLVREGRIVEARKLFDKMPAK-DVQAWNLMIAGYLDNGCV 192
M + S + +V+ L R G + A++ +MP K D W +++ + + +
Sbjct: 818 SMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNM 877
Query: 193 GVAE---DLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEK-----TW--- 241
+ E ++ D ++ L N S++ DA ++M E K +W
Sbjct: 878 EIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEV 937
Query: 242 -NSIISVLI---RNGLVKEAHSYLE 262
NSI S + + L E H Y +
Sbjct: 938 KNSIHSFYVGDQNHPLADEIHEYFQ 962
>sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g47840
OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1
Length = 706
Score = 304 bits (779), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 196/633 (30%), Positives = 323/633 (51%), Gaps = 35/633 (5%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMP------ERDMFTYNTVI 59
++ A+ +FDKMP D V+W +I+ Y D A+ LF+ M D + V+
Sbjct: 56 LRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVL 115
Query: 60 AGLMQSDNVQGAKEVFDGMEVR-----DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDV 114
QS N+ E V+ V +S++ Y G ID++ RVF MP ++
Sbjct: 116 KACGQSSNI-AYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNA 174
Query: 115 VSWNLVIGALVNCQRMDLAESYFKEMGAR----DVASWTIMVNGL-----VREGRIVEAR 165
V+W +I LV+ R +YF EM D ++ I + V+ G+ +
Sbjct: 175 VTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTH 234
Query: 166 KLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVN-SRRID 224
+ A N + Y + G + LF+ M +RD+ SW LI + +
Sbjct: 235 VIVRGFVTTLCVA-NSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVK 293
Query: 225 AAISYFK----QMPETCEKTWNSIISV---LIRNGLVKEAHSYLEKYPYSNIASWTNVIV 277
A ++ K Q+P E+T+ S+ S L R ++ H + ++ S +N ++
Sbjct: 294 AVETFIKMRNSQVPPN-EQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMM 352
Query: 278 G-YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNA 336
Y G + SA +F+ M RD+ W+ +I G + GEEG K+F M++SG P +
Sbjct: 353 KMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDF 412
Query: 337 TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSV 396
S+L++ ++ ++ GRQ+HA A+ Q +TV +++I MY++CG+I+ A + F
Sbjct: 413 ALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGET 472
Query: 397 PIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGR 456
DI+S ++I G A HG +++A++LFE+ F+PD +TF+ VL+AC+++G +D G
Sbjct: 473 DRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDLGF 532
Query: 457 YYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516
+YF+ M+ Y ++P HY C+VDLL R G + +A ++NE+ +V VW LL A
Sbjct: 533 HYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDV---VWTTLLIA 589
Query: 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEP 576
C+ +I+ G A ER++EL+P + + L +Y S G E+A + MK GV KEP
Sbjct: 590 CKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEP 649
Query: 577 GCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNL 609
G S I+I D F+SGD HP+ + +L L
Sbjct: 650 GWSSIKIKDCVSAFVSGDRFHPQSEDIYNILEL 682
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 112/434 (25%), Positives = 180/434 (41%), Gaps = 85/434 (19%)
Query: 152 VNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRD----- 206
+ L+ G + AR++FDKMP D+ +W +I Y+ A LF M D
Sbjct: 47 LRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSP 106
Query: 207 --------LTSWKQLIN--------------GLVNS--------------RRIDAAISYF 230
L + Q N L++S +ID + F
Sbjct: 107 DTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVF 166
Query: 231 KQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIAS------------------- 271
+MP TW +II+ L+ G KE +Y + S S
Sbjct: 167 SEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVK 226
Query: 272 -----WTNVIVG---------------YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLG 311
T+VIV Y E GE+ + +FE M+ RDV W +I +
Sbjct: 227 YGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLI--VA 284
Query: 312 ENDLGEE--GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQF 369
+G+E ++ F++M+ S P+ TF S+ + C+ L L G Q+H + + N
Sbjct: 285 YKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDS 344
Query: 370 TTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRL 429
+VSN+M+ MY+ CGN+ SA + F + DIISW++II G G+ E+ + F MR
Sbjct: 345 LSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQ 404
Query: 430 TDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLID 489
+ KP D +LS +++ GR + + L+ S + ++++ + G I
Sbjct: 405 SGTKPTDFALASLLSVSGNMAVIEGGR-QVHALALCFGLEQNSTVRSSLINMYSKCGSIK 463
Query: 490 EAMNLLNEIRADGI 503
EA + E D I
Sbjct: 464 EASMIFGETDRDDI 477
Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 133/286 (46%), Gaps = 26/286 (9%)
Query: 180 NLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQM------ 233
N + ++ G + A +F KM D+ SW +I V + D A+ F M
Sbjct: 44 NSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHA 103
Query: 234 --PETCEKTWNSIISVLIRN-------GLVKEAHSYLEKYP-YSNIASWTNVIVGYFEMG 283
P+T S++SV+++ + H+Y K S++ ++++ Y +G
Sbjct: 104 VSPDT------SVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVG 157
Query: 284 EVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLT 343
++ + +VF M R+ W +I GL +EGL +F +M S D TF L
Sbjct: 158 KIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALK 217
Query: 344 ICSDLPTLDLGRQIHAQAIKIARNQFTT--VSNAMITMYARCGNIQSALLEFSSVPIHDI 401
C+ L + G+ IH I R TT V+N++ TMY CG +Q L F ++ D+
Sbjct: 218 ACAGLRQVKYGKAIHTHV--IVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDV 275
Query: 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACS 447
+SW S+I G KA+E F +MR + P++ TF + SAC+
Sbjct: 276 VSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACA 321
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 131/573 (22%), Positives = 233/573 (40%), Gaps = 74/573 (12%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPE----RDMFTYNT 57
R +I ++ +F +MP R+ VTW +I G G + F++M D +T+
Sbjct: 155 RVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAI 214
Query: 58 VIAGLMQSDNVQGAKEVFDGMEVRDVVTW----NSMISGYVCNGLIDEALRVFHGMPLKD 113
+ V+ K + + VR VT NS+ + Y G + + L +F M +D
Sbjct: 215 ALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERD 274
Query: 114 VVSWNLVIGALVNC-QRMDLAESYFKEMGAR---DVASWTIMVNGLVREGRIVEARKLFD 169
VVSW +I A Q + E++ K ++ + ++ M + R+V +L
Sbjct: 275 VVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHC 334
Query: 170 KMPA----KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDA 225
+ + + N M+ Y G + A LFQ M RD+ SW +I G + +
Sbjct: 335 NVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEE 394
Query: 226 AISYFKQMPETCEKTWN----SIISV-----LIRNGLVKEAHSYLEKYPY-SNIASWTNV 275
YF M ++ K + S++SV +I G ++ H+ + N +++
Sbjct: 395 GFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGG--RQVHALALCFGLEQNSTVRSSL 452
Query: 276 IVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDN 335
I Y + G + A +F D+ MI G E+ +E + F + + G PD+
Sbjct: 453 INMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDS 512
Query: 336 ATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSS 395
TF SVLT C+ LDLG N M Y N++ A +
Sbjct: 513 VTFISVLTACTHSGQLDLGFHYF---------------NMMQETY----NMRPAKEHYGC 553
Query: 396 VPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQG 455
+ ++C AEK + +K DD+ + +L AC G +++G
Sbjct: 554 MV--------DLLCRAGRLSDAEKMINEM------SWKKDDVVWTTLLIACKAKGDIERG 599
Query: 456 RYYFDCMKNKYFLQPRSA-HYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL 514
R + + L P A + ++ G ++EA N+ ++A G+ P W ++
Sbjct: 600 RRAAERILE---LDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPG-WSSI- 654
Query: 515 GACRIHNNIKVGEIAGERVMELEPNNSGVYLIL 547
+I + + ++G+R P + +Y IL
Sbjct: 655 ---KIKDCVS-AFVSGDR---FHPQSEDIYNIL 680
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 304 bits (779), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 186/664 (28%), Positives = 331/664 (49%), Gaps = 82/664 (12%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQM----PERDMFTY------ 55
++EA +FD++ + WN+++ K+G ++ LF +M E D +T+
Sbjct: 145 LKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKS 204
Query: 56 -----------------------------NTVIAGLMQSDNVQGAKEVFDGMEVRDVVTW 86
N+++A +++ V A++VFD M RDV++W
Sbjct: 205 FSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISW 264
Query: 87 NSMISGYVCNGLIDEALRVFHGMPLK----DVVSWNLVIGALVNCQRMDLAESY----FK 138
NS+I+GYV NGL ++ L VF M + D+ + V + + + L + K
Sbjct: 265 NSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVK 324
Query: 139 EMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDL 198
+R+ +++ + G + A+ +F +M + V ++ MIAGY G G A L
Sbjct: 325 ACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKL 384
Query: 199 FQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAH 258
F++M + ++ + ++N + ++ + E K H
Sbjct: 385 FEEMEEEGISPDVYTVTAVLN------CCARYRLLDEG------------------KRVH 420
Query: 259 SYLEKYPYSNIASWTNVIVG-YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGE 317
++++ +N ++ Y + G + A VF M +D+ WN +I G +N
Sbjct: 421 EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYAN 480
Query: 318 EGLKFF-VQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT---VS 373
E L F + ++E SPD T VL C+ L D GR+IH I RN + + V+
Sbjct: 481 EALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGY---IMRNGYFSDRHVA 537
Query: 374 NAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFK 433
N+++ MYA+CG + A + F + D++SW +I G HG+ ++A+ LF +MR +
Sbjct: 538 NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIE 597
Query: 434 PDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMN 493
D+I+FV +L ACS++GLVD+G +F+ M+++ ++P HY C+VD+L R G + +A
Sbjct: 598 ADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYR 657
Query: 494 LLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLS 553
+ + I T+WGALL CRIH+++K+ E E+V ELEP N+G Y+++ +Y
Sbjct: 658 FIENM---PIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAE 714
Query: 554 CGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTE 613
+ E KR+ ++ + G++K PGCSWI+I ++F++GDSS+P+ + L +
Sbjct: 715 AEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRAR 774
Query: 614 IERE 617
+ E
Sbjct: 775 MIEE 778
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 159/578 (27%), Positives = 244/578 (42%), Gaps = 105/578 (18%)
Query: 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGM 78
R N +R + ++G L+NA+ L + D+ + +D +K + DG
Sbjct: 59 RSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLCAD----SKSLKDGK 114
Query: 79 EVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFK 138
EV + + N G+V + + L + + NC + A F
Sbjct: 115 EVDNFIRGN----GFVIDSNLGSKLSLMY-----------------TNCGDLKEASRVFD 153
Query: 139 EMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQ--------------------- 177
E+ W I++N L + G + LF KM + V+
Sbjct: 154 EVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHG 213
Query: 178 ------------------AWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVN 219
N ++A YL N V A +F +M +RD+ SW +ING V+
Sbjct: 214 GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273
Query: 220 SRRIDAAISYFKQMPET-CEKTWNSIISVLIRNG------LVKEAHSYLEKYPYSNIASW 272
+ + +S F QM + E +I+SV L + HS K +S +
Sbjct: 274 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF 333
Query: 273 TNVIVG-YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGP 331
N ++ Y + G++ SA VF M+ R V + MI G L E +K F +M+E G
Sbjct: 334 CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393
Query: 332 SPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT-VSNAMITMYARCGNIQSAL 390
SPD T T+VL C+ LD G+++H + IK F VSNA++ MYA+CG++Q A
Sbjct: 394 SPDVYTVTAVLNCCARYRLLDEGKRVH-EWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452
Query: 391 LEFSSVPIHDIISWNSIICGLAYHGYAEKALELFE-RMRLTDFKPDDITFVGVLSACSYA 449
L FS + + DIISWN+II G + + YA +AL LF + F PD+ T VL AC+
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASL 512
Query: 450 GLVDQGRYYFD-CMKNKYFLQPRSAH-----------------------------YTCVV 479
D+GR M+N YF A+ +T ++
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMI 572
Query: 480 DLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC 517
G G EA+ L N++R GIE + +LL AC
Sbjct: 573 AGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 610
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 125/503 (24%), Positives = 218/503 (43%), Gaps = 84/503 (16%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQM----PERDMFTYN 56
++N R+ A+ +FD+M +RD ++WN +I GY NG + + +F QM E D+ T
Sbjct: 241 LKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIV 300
Query: 57 TVIAGLMQS-----------------------------------DNVQGAKEVFDGMEVR 81
+V AG S ++ AK VF M R
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR 360
Query: 82 DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNC----QRMDLAESYF 137
VV++ SMI+GY GL EA+++F M + + + A++NC + +D +
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 420
Query: 138 KEMGARDVASWTIMVNGLV----REGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVG 193
+ + D+ + N L+ + G + EA +F +M KD+ +WN +I GY N
Sbjct: 421 EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYAN 480
Query: 194 VAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGL 253
A LF N L+ +R + C + +S +
Sbjct: 481 EALSLF---------------NLLLEEKRFSP-----DERTVACVLPACASLSAFDKG-- 518
Query: 254 VKEAHSYLEKYPYSNIASWTNVIVG-YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGE 312
+E H Y+ + Y + N +V Y + G + A +F+ + ++D+ W VMI G G
Sbjct: 519 -REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGM 577
Query: 313 NDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQI-----HAQAIKIARN 367
+ G+E + F QM+++G D +F S+L CS +D G + H I+
Sbjct: 578 HGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVE 637
Query: 368 QFTTVSNAMITMYARCGNIQSALLEFSSVPI-HDIISWNSIICGLAYHGYAEKALELFER 426
+ + + M AR G++ A ++PI D W +++CG H + A ++ E
Sbjct: 638 HYACI----VDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAE- 692
Query: 427 MRLTDFKPDDITFVGVLSACSYA 449
++ + +P++ + VL A YA
Sbjct: 693 -KVFELEPENTGYY-VLMANIYA 713
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 153/339 (45%), Gaps = 45/339 (13%)
Query: 267 SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQM 326
SN+ S +++ Y G++ A +VF+ + WN+++ L ++ + F +M
Sbjct: 129 SNLGSKLSLM--YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKM 186
Query: 327 KESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNI 386
SG D+ TF+ V S L ++ G Q+H +K + +V N+++ Y + +
Sbjct: 187 MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRV 246
Query: 387 QSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446
SA F + D+ISWNSII G +G AEK L +F +M ++ + D T V V + C
Sbjct: 247 DSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGC 306
Query: 447 SYAGLVDQGRYYFDCMKNKYF-----------------------------LQPRS-AHYT 476
+ + L+ GR F + RS YT
Sbjct: 307 ADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYT 366
Query: 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVW--GALLGACRIHNNIKVGEIAGERVM 534
++ R GL EA+ L E+ +GI SP V+ A+L C + + G+RV
Sbjct: 367 SMIAGYAREGLAGEAVKLFEEMEEEGI--SPDVYTVTAVLNCCARYRLLD----EGKRVH 420
Query: 535 E-LEPNNSG----VYLILTEMYLSCGRREDAKRIFAQMK 568
E ++ N+ G V L +MY CG ++A+ +F++M+
Sbjct: 421 EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR 459
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial
OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1
Length = 1028
Score = 303 bits (777), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 195/604 (32%), Positives = 312/604 (51%), Gaps = 55/604 (9%)
Query: 12 LFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGA 71
+ K ++ N ++ Y K G L++A +F +M +RD T+NT+I +Q +N A
Sbjct: 454 IIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEA 513
Query: 72 KEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMD 131
++F M + +V+ + ++ + +A HG L G V+C +
Sbjct: 514 FDLFKRMNLCGIVSDGACLASTL------KACTHVHG----------LYQGKQVHCLSVK 557
Query: 132 LAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGC 191
RD+ + + +++ + G I +ARK+F +P V + N +IAGY N
Sbjct: 558 CGLD-------RDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNN- 609
Query: 192 VGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRN 251
+ A LFQ+M R VN I F + E C K + +
Sbjct: 610 LEEAVVLFQEMLTRG-----------VNPSEIT-----FATIVEACHKPESLTLGT---- 649
Query: 252 GLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVG--SAIKVF-ELMTTRDVTVWNVMIF 308
+ H + K +S+ + + + M G A +F EL + + + +W M+
Sbjct: 650 ----QFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMS 705
Query: 309 GLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQ 368
G +N EE LKF+ +M+ G PD ATF +VL +CS L +L GR IH+ +A +
Sbjct: 706 GHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDL 765
Query: 369 FTTVSNAMITMYARCGNIQSALLEFSSVPIH-DIISWNSIICGLAYHGYAEKALELFERM 427
SN +I MYA+CG+++ + F + +++SWNS+I G A +GYAE AL++F+ M
Sbjct: 766 DELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSM 825
Query: 428 RLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGL 487
R + PD+ITF+GVL+ACS+AG V GR F+ M +Y ++ R H C+VDLLGR+G
Sbjct: 826 RQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGY 885
Query: 488 IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLIL 547
+ EA + I A ++ +W +LLGACRIH + GEI+ E+++ELEP NS Y++L
Sbjct: 886 LQEADDF---IEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLL 942
Query: 548 TEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLL 607
+ +Y S G E A + M++ GVKK PG SWI + H+F +GD SH + ++ L
Sbjct: 943 SNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIEMFL 1002
Query: 608 NLLH 611
L+
Sbjct: 1003 EDLY 1006
Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 161/658 (24%), Positives = 285/658 (43%), Gaps = 114/658 (17%)
Query: 3 NARIQEAQNLFDKMPQRDTVTWNV--------MIRGYFKNGFLDNAMCLFNQMPERDMFT 54
++ +++ +FD+MPQR + + +I G G L NA+ D++
Sbjct: 55 QCKLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSEGRLGNAIV--------DLYA 106
Query: 55 YNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALR----VFHGMP 110
+ V A++ FD +E +DV WNSM+S Y G + LR +F
Sbjct: 107 ---------KCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQI 156
Query: 111 LKDVVSWNLVI-------------------------------GALVN----CQRMDLAES 135
+ ++++V+ GALV+ C R+ A
Sbjct: 157 FPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARR 216
Query: 136 YFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAK----DVQAWNLMIAGYLDNGC 191
F+ + + WT + +G V+ G EA +F++M + D A+ +I Y+ G
Sbjct: 217 VFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGK 276
Query: 192 VGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSII-SVLIR 250
+ A LF +M D+ +W +I+G AI YF M ++ K+ S + SVL
Sbjct: 277 LKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSA 336
Query: 251 NGLVKE------AHSYLEKYPY-SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVW 303
G+V H+ K SNI ++++ Y + ++ +A KVFE + ++ W
Sbjct: 337 IGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFW 396
Query: 304 NVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAI- 362
N MI G N + ++ F+ MK SG + D+ TFTS+L+ C+ L++G Q H+ I
Sbjct: 397 NAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIK 456
Query: 363 -KIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKAL 421
K+A+N F V NA++ MYA+CG ++ A F + D ++WN+II +A
Sbjct: 457 KKLAKNLF--VGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAF 514
Query: 422 ELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDL 481
+LF+RM L D L AC++ + QG+ C+ K L + ++D+
Sbjct: 515 DLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGK-QVHCLSVKCGLDRDLHTGSSLIDM 573
Query: 482 LGRFGLI------------------------------DEAMNLLNEIRADGIEVSPTVWG 511
+ G+I +EA+ L E+ G+ S +
Sbjct: 574 YSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNLEEAVVLFQEMLTRGVNPSEITFA 633
Query: 512 ALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL--ILTEMYLSCGRREDAKRIFAQM 567
++ AC ++ +G ++ + ++ G YL L MY++ +A +F+++
Sbjct: 634 TIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSEL 691
Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 115/506 (22%), Positives = 216/506 (42%), Gaps = 75/506 (14%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
+R ++++A+ LF +M D V WNVMI G+ K G A+ F M + + + + +
Sbjct: 272 IRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLG 331
Query: 61 GLMQS---------------------------------------DNVQGAKEVFDGMEVR 81
++ + + ++ A +VF+ +E +
Sbjct: 332 SVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEK 391
Query: 82 DVVTWNSMISGYVCNGLIDEALRVFHGMPLK----DVVSWNLVIGALVNCQRMDLAESYF 137
+ V WN+MI GY NG + + +F M D ++ ++ +++ +
Sbjct: 392 NDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFH 451
Query: 138 KEMGARDVASWTIMVNGLV----REGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVG 193
+ + +A + N LV + G + +AR++F++M +D WN +I Y+ +
Sbjct: 452 SIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENES 511
Query: 194 VAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGL 253
A DLF++M+ + S + + + + KQ + + ++ GL
Sbjct: 512 EAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQ-----------VHCLSVKCGL 560
Query: 254 VKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEN 313
++ H + +++I Y + G + A KVF + V N +I G +N
Sbjct: 561 DRDLH------------TGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN 608
Query: 314 DLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK---IARNQFT 370
+L EE + F +M G +P TF +++ C +L LG Q H Q K + ++
Sbjct: 609 NL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYL 667
Query: 371 TVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLT 430
+S + M +R AL S P I+ W ++ G + +G+ E+AL+ ++ MR
Sbjct: 668 GISLLGMYMNSRGMTEACALFSELSSP-KSIVLWTGMMSGHSQNGFYEEALKFYKEMRHD 726
Query: 431 DFKPDDITFVGVLSACSYAGLVDQGR 456
PD TFV VL CS + +GR
Sbjct: 727 GVLPDQATFVTVLRVCSVLSSLREGR 752
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 142/301 (47%), Gaps = 12/301 (3%)
Query: 274 NVIVG-YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEG--LKFFVQMKESG 330
N IV Y + +V A K F+ + +DVT WN M+ + +G+ G L+ FV + E+
Sbjct: 99 NAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMY--SSIGKPGKVLRSFVSLFENQ 155
Query: 331 PSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSAL 390
P+ TF+ VL+ C+ ++ GRQIH IK+ + + A++ MYA+C I A
Sbjct: 156 IFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDAR 215
Query: 391 LEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAG 450
F + + + W + G G E+A+ +FERMR +PD + FV V++ G
Sbjct: 216 RVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLG 275
Query: 451 LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVW 510
+ R F M + P + ++ G+ G A+ +R ++ + +
Sbjct: 276 KLKDARLLFGEMSS-----PDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTL 330
Query: 511 GALLGACRIHNNIKVGEIAGERVMELE-PNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569
G++L A I N+ +G + ++L +N V L MY C + E A ++F ++E
Sbjct: 331 GSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEE 390
Query: 570 N 570
Sbjct: 391 K 391
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 21/231 (9%)
Query: 350 TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIIC 409
L +G+ +H++++ + + + NA++ +YA+C + A +F + D+ +WNS++
Sbjct: 75 ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLS 133
Query: 410 GLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQ 469
+ G K L F + P+ TF VLS C+ V+ GR C K L+
Sbjct: 134 MYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGR-QIHCSMIKMGLE 192
Query: 470 PRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIA 529
S +VD+ + I +A + I ++ + W C +K G +
Sbjct: 193 RNSYCGGALVDMYAKCDRISDARRVFEWI----VDPNTVCW-----TCLFSGYVKAG-LP 242
Query: 530 GERVMELE--------PNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572
E V+ E P++ ++ + Y+ G+ +DA+ +F +M V
Sbjct: 243 EEAVLVFERMRDEGHRPDHLA-FVTVINTYIRLGKLKDARLLFGEMSSPDV 292
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 89/190 (46%), Gaps = 22/190 (11%)
Query: 6 IQEAQNLFDKMPQR-DTVTWNVMIRGYFKNGFLDNAMCLFNQMPER----DMFTYNTVIA 60
++ + +FD+M +R + V+WN +I GY KNG+ ++A+ +F+ M + D T+ V+
Sbjct: 783 MKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLT 842
Query: 61 GLMQSDNVQGAKEVFD------GMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLK-D 113
+ V +++F+ G+E R V M+ G + EA LK D
Sbjct: 843 ACSHAGKVSDGRKIFEMMIGQYGIEAR-VDHVACMVDLLGRWGYLQEADDFIEAQNLKPD 901
Query: 114 VVSWNLVIGALVNCQ------RMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKL 167
W+ ++GA C+ R +++ E+ ++ +++ ++ N +G +A L
Sbjct: 902 ARLWSSLLGA---CRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANAL 958
Query: 168 FDKMPAKDVQ 177
M + V+
Sbjct: 959 RKVMRDRGVK 968
>sp|Q9SJK9|PP189_ARATH Pentatricopeptide repeat-containing protein At2g36980,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2
SV=1
Length = 625
Score = 302 bits (773), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 180/613 (29%), Positives = 302/613 (49%), Gaps = 51/613 (8%)
Query: 59 IAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDV---- 114
IA L +S + A++VFDGM D V WN+M++ Y GL EA+ +F + D
Sbjct: 11 IASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAKPDD 70
Query: 115 ---------------VSWNLVIGALV--------------------NCQRMDLAESYFKE 139
V + I +LV C A F++
Sbjct: 71 YSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRD 130
Query: 140 M--GARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAED 197
M +R+ +W ++ + + A +F +MP + AWN+MI+G+ G +
Sbjct: 131 MCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESCLS 190
Query: 198 LFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETC--EKTW-------NSIISVL 248
LF++M + + + L+N+ D++ + +M + W NS++S
Sbjct: 191 LFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFY 250
Query: 249 IRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIF 308
+ G +A LE SW ++I ++GE A++VF L +++ W MI
Sbjct: 251 TKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMIT 310
Query: 309 GLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQ 368
G G N GE+ L+FFV+M +SG D+ + +VL CS L L G+ IH I
Sbjct: 311 GYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQG 370
Query: 369 FTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMR 428
+ V NA++ +YA+CG+I+ A F + D++SWN+++ HG A++AL+L++ M
Sbjct: 371 YAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLADQALKLYDNMI 430
Query: 429 LTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLI 488
+ KPD++TF+G+L+ CS++GLV++G F+ M Y + H TC++D+ GR G +
Sbjct: 431 ASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHVTCMIDMFGRGGHL 490
Query: 489 DEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLIL 547
EA +L + + S + W LLGAC H + ++G + + EP+ +++L
Sbjct: 491 AEAKDLATTYSSLVTDSSNNSSWETLLGACSTHWHTELGREVSKVLKIAEPSEEMSFVLL 550
Query: 548 TEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLL 607
+ +Y S GR ++ + + +M E G+KK PGCSWI++ + F+ GDSSHP+ L L
Sbjct: 551 SNLYCSTGRWKEGEDVRREMVERGMKKTPGCSWIEVGNQVSTFVVGDSSHPRLEELSETL 610
Query: 608 NLLHTEIEREILF 620
N L E+ F
Sbjct: 611 NCLQHEMRNPETF 623
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 146/339 (43%), Gaps = 46/339 (13%)
Query: 273 TNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPS 332
T+ I + G + SA +VF+ M D WN M+ L +E + F Q++ S
Sbjct: 8 TSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAK 67
Query: 333 PDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN------- 385
PD+ +FT++L+ C+ L + GR+I + I+ V+N++I MY +C +
Sbjct: 68 PDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKV 127
Query: 386 --------------------------IQSALLEFSSVPIHDIISWNSIICGLAYHGYAEK 419
++AL F +P +WN +I G A+ G E
Sbjct: 128 FRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLES 187
Query: 420 ALELFERMRLTDFKPDDITFVGVLSACSY-AGLVDQGRYYFDCMKNKYFLQPRSAHYTCV 478
L LF+ M ++FKPD TF +++ACS + V GR M + A + V
Sbjct: 188 CLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNS-V 246
Query: 479 VDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGE-RVMELE 537
+ + G D+AM L I ++ W +++ AC +K+GE V L
Sbjct: 247 LSFYTKLGSRDDAMRELESIEV----LTQVSWNSIIDAC-----MKIGETEKALEVFHLA 297
Query: 538 PNNSGV-YLILTEMYLSCGRREDAKRIFAQMKENGVKKE 575
P + V + + Y G E A R F +M ++GV +
Sbjct: 298 PEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSD 336
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 108/456 (23%), Positives = 191/456 (41%), Gaps = 72/456 (15%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPER----DMFTYN 56
M + + A ++F +MP+R WN+MI G+ G L++ + LF +M E D +T++
Sbjct: 149 MNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESCLSLFKEMLESEFKPDCYTFS 208
Query: 57 TVI-AGLMQSDNVQGAKEVFDGME----VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL 111
+++ A S NV + V M V NS++S Y G D+A+R + +
Sbjct: 209 SLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEV 268
Query: 112 KDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKM 171
VSWN +I A + + A F +++ +WT M+ G R G +A + F +M
Sbjct: 269 LTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEM 328
Query: 172 PAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFK 231
V + + L + C G+A L ++I+G +
Sbjct: 329 MKSGVDSDHFAYGAVL-HACSGLA-----------LLGHGKMIHGCL------------- 363
Query: 232 QMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVG-YFEMGEVGSAIK 290
H + Y Y N +V Y + G++ A +
Sbjct: 364 -------------------------IHCGFQGYAYVG-----NALVNLYAKCGDIKEADR 393
Query: 291 VFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPT 350
F + +D+ WN M+F G + L ++ LK + M SG PDN TF +LT CS
Sbjct: 394 AFGDIANKDLVSWNTMLFAFGVHGLADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGL 453
Query: 351 LDLGRQIHAQAIKIARNQFTTVS-NAMITMYARCGNIQSA---LLEFSSVPI--HDIISW 404
++ G I +K R MI M+ R G++ A +SS+ + SW
Sbjct: 454 VEEGCMIFESMVKDYRIPLEVDHVTCMIDMFGRGGHLAEAKDLATTYSSLVTDSSNNSSW 513
Query: 405 NSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV 440
+++ + H + E E+ + +++ + ++++FV
Sbjct: 514 ETLLGACSTHWHTELGREVSKVLKIAE-PSEEMSFV 548
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 103/419 (24%), Positives = 165/419 (39%), Gaps = 57/419 (13%)
Query: 149 TIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMH----- 203
T + L + GRI AR++FD MP D AWN M+ Y G A LF ++
Sbjct: 8 TSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAK 67
Query: 204 --DRDLTSWKQLINGLVN---SRRIDAAI---SYFKQMPETCEKTWNSIISVLIRNGLVK 255
D T+ L N R+I + + + +P NS+I + +
Sbjct: 68 PDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVN-----NSLIDMYGKCSDTL 122
Query: 256 EAHSYLEKY--PYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEN 313
A+ N +W +++ Y + +A+ VF M R WN+MI G
Sbjct: 123 SANKVFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHC 182
Query: 314 DLGEEGLKFFVQMKESGPSPDNATFTSVLTICS-DLPTLDLGRQIHAQAIKIARNQFTTV 372
E L F +M ES PD TF+S++ CS D + GR +HA +K +
Sbjct: 183 GKLESCLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEA 242
Query: 373 SNAMITMYARCGNIQSALLEFSSV-------------------------------PIHDI 401
N++++ Y + G+ A+ E S+ P +I
Sbjct: 243 KNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNI 302
Query: 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDC 461
++W ++I G +G E+AL F M + D + VL ACS L+ G+ C
Sbjct: 303 VTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGC 362
Query: 462 MKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH 520
+ + F Q + +V+L + G I EA +I + W +L A +H
Sbjct: 363 LIHCGF-QGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDL----VSWNTMLFAFGVH 416
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 298 bits (764), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 275/462 (59%), Gaps = 33/462 (7%)
Query: 150 IMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTS 209
+++N V+ + +A +LFD+MP ++V +W MI+ Y + C K+H + L
Sbjct: 101 VLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAY--SKC---------KIHQKAL-- 147
Query: 210 WKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISV-LIRNGLVKEAHSYLEKYPYSN 268
+ L+ L ++ R + + + + +C N + V ++ G++KE LE S+
Sbjct: 148 -ELLVLMLRDNVRPN--VYTYSSVLRSC----NGMSDVRMLHCGIIKEG---LE----SD 193
Query: 269 IASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKE 328
+ + +I + ++GE A+ VF+ M T D VWN +I G +N + L+ F +MK
Sbjct: 194 VFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKR 253
Query: 329 SGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQS 388
+G + AT TSVL C+ L L+LG Q H +K +Q ++NA++ MY +CG+++
Sbjct: 254 AGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKY--DQDLILNNALVDMYCKCGSLED 311
Query: 389 ALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448
AL F+ + D+I+W+++I GLA +GY+++AL+LFERM+ + KP+ IT VGVL ACS+
Sbjct: 312 ALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSH 371
Query: 449 AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT 508
AGL++ G YYF MK Y + P HY C++DLLG+ G +D+A+ LLNE+ E
Sbjct: 372 AGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMEC---EPDAV 428
Query: 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568
W LLGACR+ N+ + E A ++V+ L+P ++G Y +L+ +Y + + + + I +M+
Sbjct: 429 TWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMR 488
Query: 569 ENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLL 610
+ G+KKEPGCSWI++N H F+ GD+SHP+ + LN L
Sbjct: 489 DRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQL 530
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 142/324 (43%), Gaps = 23/324 (7%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQM----PERDMFTYNTVIAG 61
+ +A LFD+MPQR+ ++W MI Y K A+ L M +++TY++V+
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171
Query: 62 LMQSDNVQ--GAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNL 119
+V+ + +G+E DV +++I + G ++AL VF M D + WN
Sbjct: 172 CNGMSDVRMLHCGIIKEGLE-SDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNS 230
Query: 120 VIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPA------ 173
+IG R D+A FK M + + ++R + +L +
Sbjct: 231 IIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD 290
Query: 174 KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQM 233
+D+ N ++ Y G + A +F +M +RD+ +W +I+GL + A+ F++M
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERM 350
Query: 234 PETCEK-TWNSIISVLI---RNGLVKEAHSYLEK----YPYSNIASWTNVIVGYF-EMGE 284
+ K + +I+ VL GL+++ Y Y + ++ + G+
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGK 410
Query: 285 VGSAIKVF-ELMTTRDVTVWNVMI 307
+ A+K+ E+ D W ++
Sbjct: 411 LDDAVKLLNEMECEPDAVTWRTLL 434
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 92/384 (23%), Positives = 157/384 (40%), Gaps = 64/384 (16%)
Query: 20 DTVTWNVMIRGYFKNGFLD--NAMC--LFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVF 75
D+ T++ +I+ N + N +C L+ MF N +I ++ + + A ++F
Sbjct: 60 DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLF 119
Query: 76 DGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVI--GALVNCQRMD-- 131
D M R+V++W +MIS Y + +AL + M L+D V N+ L +C M
Sbjct: 120 DQMPQRNVISWTTMISAYSKCKIHQKALELLVLM-LRDNVRPNVYTYSSVLRSCNGMSDV 178
Query: 132 --LAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDN 189
L KE DV + +++ + G +A +FD+M D WN +I G+ N
Sbjct: 179 RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQN 238
Query: 190 GCVGVAEDLFQKM-------------------------------------HDRDLTSWKQ 212
VA +LF++M +D+DL
Sbjct: 239 SRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNA 298
Query: 213 LINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASW 272
L++ ++ A+ F QM E TW+++IS L +NG +EA E+ S
Sbjct: 299 LVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPN 358
Query: 273 TNVIVG-YFEMGEVG----------SAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLK 321
IVG F G S K++ + R+ + MI LG+ ++ +K
Sbjct: 359 YITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVRE--HYGCMIDLLGKAGKLDDAVK 416
Query: 322 FFVQMKESGPSPDNATFTSVLTIC 345
+M+ PD T+ ++L C
Sbjct: 417 LLNEME---CEPDAVTWRTLLGAC 437
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 118/269 (43%), Gaps = 50/269 (18%)
Query: 7 QEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMP------------------ 48
++A ++FD+M D + WN +I G+ +N D A+ LF +M
Sbjct: 211 EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC 270
Query: 49 -------------------ERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSM 89
++D+ N ++ + +++ A VF+ M+ RDV+TW++M
Sbjct: 271 TGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTM 330
Query: 90 ISGYVCNGLIDEALRVFHGMPLKDV-VSWNLVIGALVNCQRMDLAES---YFKEM----G 141
ISG NG EAL++F M ++ ++G L C L E YF+ M G
Sbjct: 331 ISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYG 390
Query: 142 ARDV-ASWTIMVNGLVREGRIVEARKLFDKMPAK-DVQAWNLMIAGYLDNGCVGVAEDLF 199
V + M++ L + G++ +A KL ++M + D W ++ + +AE
Sbjct: 391 IDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAA 450
Query: 200 QK---MHDRDLTSWKQLINGLVNSRRIDA 225
+K + D ++ L N NS++ D+
Sbjct: 451 KKVIALDPEDAGTYTLLSNIYANSQKWDS 479
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 120/266 (45%), Gaps = 30/266 (11%)
Query: 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGM 78
+D + N ++ Y K G L++A+ +FNQM ERD+ T++T+I+GL Q+ Q A ++F+ M
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERM 350
Query: 79 EVRDVVTWNSMISG--YVCN--GLIDEALRVFHGM-------PLKDVVSWNLVIGALVNC 127
+ I G + C+ GL+++ F M P+++ + +I L
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVRE--HYGCMIDLLGKA 408
Query: 128 QRMDLAESYFKEMGAR-DVASWTIMVNGLVREGRIVEARKLFDKMPA---KDVQAWNLMI 183
++D A EM D +W ++ + +V A K+ A +D + L+
Sbjct: 409 GKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLS 468
Query: 184 AGYLDNGCVGVAEDLFQKMHDRDL-----TSWKQLINGLVNSRRIDAAISYFKQMPETCE 238
Y ++ E++ +M DR + SW ++ +++I A I P+ E
Sbjct: 469 NIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEV------NKQIHAFIIGDNSHPQIVE 522
Query: 239 --KTWNSIISVLIRNGLVKEAHSYLE 262
K N +I L G V E + L+
Sbjct: 523 VSKKLNQLIHRLTGIGYVPETNFVLQ 548
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMF-TYNTVI----- 59
+++A +F++M +RD +TW+ MI G +NG+ A+ LF +M Y T++
Sbjct: 309 LEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFA 368
Query: 60 ---AGLMQSD--NVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLK-D 113
AGL++ + K+++ VR+ + MI G +D+A+++ + M + D
Sbjct: 369 CSHAGLLEDGWYYFRSMKKLYGIDPVRE--HYGCMIDLLGKAGKLDDAVKLLNEMECEPD 426
Query: 114 VVSWNLVIGALVNCQRMDLAESYFKEMGA---RDVASWTIMVN 153
V+W ++GA + M LAE K++ A D ++T++ N
Sbjct: 427 AVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSN 469
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 296 bits (757), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 193/646 (29%), Positives = 328/646 (50%), Gaps = 41/646 (6%)
Query: 11 NLFDKMPQRDTVTWNVMIRGYFK----NGFLDNAMCLFNQMPERDMFTYNTVI---AGLM 63
+FD++ +R+ V+WN +I L+ C+ ++ E FT +V+ + L
Sbjct: 154 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213
Query: 64 QSDNVQGAKEVFD-GMEVRDVVTW--NSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
+ + K+V G+ ++ ++ N++++ Y G + + + +D+V+WN V
Sbjct: 214 MPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTV 273
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNG---------LVREGRIVEARKLFDKM 171
+ +L +++ A Y +EM V ++ ++R G+ + A L +
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 333
Query: 172 PAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFK 231
++ + ++ Y + V +F M DR + W +I G + A+ F
Sbjct: 334 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 393
Query: 232 QMPETCEKTWNS-----IISVLIRNGLV--KEA-HSYLEKYPYSNIASWTNVIVG-YFEM 282
M E+ NS ++ +R+G KEA H ++ K N ++ Y +
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453
Query: 283 GEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMK------ESGPS---- 332
G++ A+++F M RD+ WN MI G ++ E+ L +M+ G S
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513
Query: 333 -PDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALL 391
P++ T ++L C+ L L G++IHA AIK V +A++ MYA+CG +Q +
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573
Query: 392 EFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGL 451
F +P ++I+WN II HG ++A++L M + KP+++TF+ V +ACS++G+
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633
Query: 452 VDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWG 511
VD+G F MK Y ++P S HY CVVDLLGR G I EA L+N + D + W
Sbjct: 634 VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAG--AWS 691
Query: 512 ALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571
+LLGA RIHNN+++GEIA + +++LEPN + Y++L +Y S G + A + MKE G
Sbjct: 692 SLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQG 751
Query: 572 VKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIERE 617
V+KEPGCSWI+ D H F++GDSSHP+ +L L L + +E
Sbjct: 752 VRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKE 797
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 132/601 (21%), Positives = 259/601 (43%), Gaps = 72/601 (11%)
Query: 24 WNVMIRGYFKNGFLDNAMCLFNQMP----ERDMFTYNTVIAGLMQSDNVQGAKEVFD--- 76
W ++R ++ L A+ + M + D + + ++ + +++ K++
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 77 --GMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAE 134
G V V N++++ Y G +VF + ++ VSWN +I +L + ++ ++A
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 135 SYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAW------------NLM 182
F+ M +V + + +V + + M K V A+ N +
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGL--MMGKQVHAYGLRKGELNSFIINTL 242
Query: 183 IAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQM----PETCE 238
+A Y G + ++ L RDL +W +++ L + ++ A+ Y ++M E E
Sbjct: 243 VAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDE 302
Query: 239 KTWNSIISV-----LIRNGLVKEAHSYLEKYPYSNIASWTNVIVG------YFEMGEVGS 287
T +S++ ++R G KE H+Y K N + N VG Y +V S
Sbjct: 303 FTISSVLPACSHLEMLRTG--KELHAYALK----NGSLDENSFVGSALVDMYCNCKQVLS 356
Query: 288 AIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKES-GPSPDNATFTSVLTICS 346
+VF+ M R + +WN MI G +N+ +E L F+ M+ES G ++ T V+ C
Sbjct: 357 GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 416
Query: 347 DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNS 406
IH +K ++ V N ++ MY+R G I A+ F + D+++WN+
Sbjct: 417 RSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNT 476
Query: 407 IICGLAYHGYAEKALELFERMR-----------LTDFKPDDITFVGVLSACSYAGLVDQG 455
+I G + + E AL L +M+ KP+ IT + +L +C+ + +G
Sbjct: 477 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 536
Query: 456 R-YYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL 514
+ + +KN L A + +VD+ + G + + + ++I + W ++
Sbjct: 537 KEIHAYAIKNN--LATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNV----ITWNVII 590
Query: 515 GACRIHNNIK--VGEIAGERVMELEPNNSGVYLILTEMYLSC---GRREDAKRIFAQMKE 569
A +H N + + + V ++PN + ++ +C G ++ RIF MK
Sbjct: 591 MAYGMHGNGQEAIDLLRMMMVQGVKPNE----VTFISVFAACSHSGMVDEGLRIFYVMKP 646
Query: 570 N 570
+
Sbjct: 647 D 647
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 143/341 (41%), Gaps = 38/341 (11%)
Query: 262 EKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLK 321
K+PY A+ T+ V A +F + +R W ++ ++L E +
Sbjct: 27 HKHPYLLRATPTSATEDV--ASAVSGAPSIF-ISQSRSPEWWIDLLRSKVRSNLLREAVL 83
Query: 322 FFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARN-QFTTVSNAMITMY 380
+V M G PDN F ++L +DL ++LG+QIHA K TV+N ++ +Y
Sbjct: 84 TYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLY 143
Query: 381 ARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV 440
+CG+ + F + + +SWNS+I L E ALE F M + +P T V
Sbjct: 144 RKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLV 203
Query: 441 GVLSACSY----AGLVDQGRYYFDCMK----NKYFLQPRSAHYTCVVD------LLGRFG 486
V++ACS GL+ + + ++ N + + A Y + LLG FG
Sbjct: 204 SVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFG 263
Query: 487 LID------------------EAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEI 528
D EA+ L E+ +G+E ++L AC ++ G+
Sbjct: 264 GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 323
Query: 529 AGERVMELEP--NNSGVYLILTEMYLSCGRREDAKRIFAQM 567
++ NS V L +MY +C + +R+F M
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 148/358 (41%), Gaps = 75/358 (20%)
Query: 5 RIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPE--------------- 49
++ + +FD M R WN MI GY +N A+ LF M E
Sbjct: 353 QVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVV 412
Query: 50 -------------------------RDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVV 84
RD F NT++ + + A +F ME RD+V
Sbjct: 413 PACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLV 472
Query: 85 TWNSMISGYVCNGLIDEALRVFHGMP-LKDVVSWN-----------LVIGALVNCQRM-- 130
TWN+MI+GYV + ++AL + H M L+ VS ++ L +C +
Sbjct: 473 TWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSA 532
Query: 131 -----DLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAG 185
++ K A DVA + +V+ + G + +RK+FD++P K+V WN++I
Sbjct: 533 LAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMA 592
Query: 186 YLDNGCVGVAEDLFQKMHDRDL----TSWKQLINGLVNSRRIDAAISYFKQMP-----ET 236
Y +G A DL + M + + ++ + +S +D + F M E
Sbjct: 593 YGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEP 652
Query: 237 CEKTWNSIISVLIRNGLVKEAHSYLEKYP--YSNIASWTNV-----IVGYFEMGEVGS 287
+ ++ +L R G +KEA+ + P ++ +W+++ I E+GE+ +
Sbjct: 653 SSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAA 710
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMP--ERDM------- 52
R +I A +F KM RD VTWN MI GY + ++A+ L ++M ER +
Sbjct: 452 RLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRV 511
Query: 53 ------FTYNTVIAGLMQSDNVQGAKEV----FDGMEVRDVVTWNSMISGYVCNGLIDEA 102
T T++ + KE+ DV ++++ Y G + +
Sbjct: 512 SLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMS 571
Query: 103 LRVFHGMPLKDVVSWNLVIGA 123
+VF +P K+V++WN++I A
Sbjct: 572 RKVFDQIPQKNVITWNVIIMA 592
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 295 bits (754), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 202/743 (27%), Positives = 339/743 (45%), Gaps = 129/743 (17%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLF------------NQMPE---- 49
+ +A+ +FD+MP R WN MI Y NG +A+ L+ + P
Sbjct: 132 LDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKA 191
Query: 50 ----RDM-------------------FTYNTVIAGLMQSDNVQGAKEVFDGMEVR-DVVT 85
RD+ F N +++ ++D++ A+ +FDG + + D V
Sbjct: 192 CAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVL 251
Query: 86 WNSMISGYVCNGLIDEALRVFHGMPL---------------------------------- 111
WNS++S Y +G E L +F M +
Sbjct: 252 WNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVL 311
Query: 112 ------KDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEAR 165
++ N +I C +M AE ++M DV +W ++ G V+ EA
Sbjct: 312 KSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEAL 371
Query: 166 KLFDKMPA---------------------------------------KDVQAWNLMIAGY 186
+ F M A ++Q N +I Y
Sbjct: 372 EFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMY 431
Query: 187 LDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYF----KQMPETCEKTWN 242
F +MHD+DL SW +I G + A+ F K+ E E
Sbjct: 432 SKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILG 491
Query: 243 SII---SVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRD 299
SI+ SVL +VKE H ++ + + ++ Y + +G A +VFE + +D
Sbjct: 492 SILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKD 551
Query: 300 VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHA 359
V W MI N E ++ F +M E+G S D+ +L+ + L L+ GR+IH
Sbjct: 552 VVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHC 611
Query: 360 QAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEK 419
++ +++ A++ MYA CG++QSA F + ++ + S+I HG +
Sbjct: 612 YLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKA 671
Query: 420 ALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479
A+ELF++MR + PD I+F+ +L ACS+AGL+D+GR + M+++Y L+P HY C+V
Sbjct: 672 AVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLV 731
Query: 480 DLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539
D+LGR + EA + ++ E + VW ALL ACR H+ ++GEIA +R++ELEP
Sbjct: 732 DMLGRANCVVEAFEFVKMMKT---EPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPK 788
Query: 540 NSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPK 599
N G ++++ ++ GR D +++ A+MK +G++K PGCSWI+++ H F + D SHP+
Sbjct: 789 NPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPE 848
Query: 600 FHRLRYLLNLLHTEIEREILFDA 622
+ L+ + ++ERE+ + A
Sbjct: 849 SKEIYEKLSEVTRKLEREVGYVA 871
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 137/290 (47%), Gaps = 27/290 (9%)
Query: 159 GRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLV 218
G + +A K+FD+MP + AWN MI Y+ NG A L+ W + G
Sbjct: 130 GSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALY----------WNMRVEG-- 177
Query: 219 NSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVG 278
+ +S F + + C K + IR+G E HS L K Y + N +V
Sbjct: 178 ----VPLGLSSFPALLKACAKLRD------IRSG--SELHSLLVKLGYHSTGFIVNALVS 225
Query: 279 -YFEMGEVGSAIKVFELMTTR-DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNA 336
Y + ++ +A ++F+ + D +WN ++ + E L+ F +M +GP+P++
Sbjct: 226 MYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSY 285
Query: 337 TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT-VSNAMITMYARCGNIQSALLEFSS 395
T S LT C LG++IHA +K + + V NA+I MY RCG + A
Sbjct: 286 TIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQ 345
Query: 396 VPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSA 445
+ D+++WNS+I G + ++ALE F M K D+++ +++A
Sbjct: 346 MNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 133/601 (22%), Positives = 237/601 (39%), Gaps = 134/601 (22%)
Query: 43 LFNQMPERDM-FTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDE 101
+F P ++ F ++ + ++ A++VFD M R WN+MI YV NG
Sbjct: 106 IFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPAS 165
Query: 102 ALRVF-----HGMP---------------LKDVVSWN---------------LVIGALVN 126
AL ++ G+P L+D+ S + ++ ALV+
Sbjct: 166 ALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVS 225
Query: 127 --CQRMDLAESY-----FKEMGARDVASWTIMVNGLVREGRIVEARKLFDKM----PA-- 173
+ DL+ + F+E G D W +++ G+ +E +LF +M PA
Sbjct: 226 MYAKNDDLSAARRLFDGFQEKG--DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPN 283
Query: 174 --------------------KDVQA--------------WNLMIAGYLDNGCVGVAEDLF 199
K++ A N +IA Y G + AE +
Sbjct: 284 SYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERIL 343
Query: 200 QKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWN-SIISVLIRNGLVK--- 255
++M++ D+ +W LI G V + A+ +F M K+ S+ S++ +G +
Sbjct: 344 RQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLL 403
Query: 256 ---EAHSYLEKYPY-SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLG 311
E H+Y+ K+ + SN+ +I Y + + F M +D+ W +I G
Sbjct: 404 AGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYA 463
Query: 312 ENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT 371
+ND E L+ F + + D S+L S L ++ + ++IH ++ T
Sbjct: 464 QNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLD-TV 522
Query: 372 VSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTD 431
+ N ++ +Y +C N+ A F S+ D++SW S+I A +G +A+ELF RM T
Sbjct: 523 IQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETG 582
Query: 432 FKPDDITF-----------------------------------VGVLSACSYAGLVDQGR 456
D + V V+ + G + +
Sbjct: 583 LSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAK 642
Query: 457 YYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516
FD ++ K LQ YT +++ G G A+ L +++R + + + ALL A
Sbjct: 643 AVFDRIERKGLLQ-----YTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYA 697
Query: 517 C 517
C
Sbjct: 698 C 698
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 109/279 (39%), Gaps = 43/279 (15%)
Query: 332 SPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARN-QFTTVSNAMITMYARCGNIQSAL 390
SP A F VL +C + GRQ+H++ K + + ++ ++ MY +CG++ A
Sbjct: 78 SPVEA-FAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAE 136
Query: 391 LEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACS--- 447
F +P +WN++I +G AL L+ MR+ +F +L AC+
Sbjct: 137 KVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLR 196
Query: 448 --------YAGLVDQG------------------------RYYFDCMKNKYFLQPRSAHY 475
++ LV G R FD + K + +
Sbjct: 197 DIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEK----GDAVLW 252
Query: 476 TCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535
++ G E + L E+ G + + L AC + K+G+ V++
Sbjct: 253 NSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLK 312
Query: 536 LEPNNSGVYLI--LTEMYLSCGRREDAKRIFAQMKENGV 572
++S +Y+ L MY CG+ A+RI QM V
Sbjct: 313 SSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADV 351
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 295 bits (754), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 198/634 (31%), Positives = 327/634 (51%), Gaps = 35/634 (5%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQM-----PERDMFTY 55
+R + +A +F KM +R+ +WNV++ GY K G+ D AMCL+++M + D++T+
Sbjct: 140 VRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTF 199
Query: 56 NTVIAGLMQSDNVQGAKEVF-----DGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMP 110
V+ ++ KEV G E+ D+ N++I+ YV G + A +F MP
Sbjct: 200 PCVLRTCGGIPDLARGKEVHVHVVRYGYEL-DIDVVNALITMYVKCGDVKSARLLFDRMP 258
Query: 111 LKDVVSWNLVI-GALVNCQRMDLAESYFKEMGAR---DVASWTIMVN-----GLVREGRI 161
+D++SWN +I G N + E +F G D+ + T +++ G R GR
Sbjct: 259 RRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRD 318
Query: 162 VEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSR 221
+ A + A D+ N + YL+ G AE LF +M +D+ SW +I+G +
Sbjct: 319 IHAYVITTGF-AVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNF 377
Query: 222 RIDAAISYFKQMPETCEK----TWNSIISVLIRNGLVK---EAHSY-LEKYPYSNIASWT 273
D AI ++ M + K T +++S G + E H ++ S +
Sbjct: 378 LPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVAN 437
Query: 274 NVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSP 333
N+I Y + + A+ +F + ++V W +I GL N+ E L F QMK + P
Sbjct: 438 NLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQP 496
Query: 334 DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEF 393
+ T T+ L C+ + L G++IHA ++ + NA++ MY RCG + +A +F
Sbjct: 497 NAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQF 556
Query: 394 SSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVD 453
+S D+ SWN ++ G + G +ELF+RM + +PD+ITF+ +L CS + +V
Sbjct: 557 NSQK-KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVR 615
Query: 454 QGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGAL 513
QG YF M++ Y + P HY CVVDLLGR G + EA + ++ + P VWGAL
Sbjct: 616 QGLMYFSKMED-YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKM---PVTPDPAVWGAL 671
Query: 514 LGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVK 573
L ACRIH+ I +GE++ + + EL+ + G Y++L +Y CG+ + ++ MKENG+
Sbjct: 672 LNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLT 731
Query: 574 KEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLL 607
+ GCSW+++ H FLS D HP+ + +L
Sbjct: 732 VDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVL 765
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 127/464 (27%), Positives = 211/464 (45%), Gaps = 46/464 (9%)
Query: 90 ISGYVCNGLIDEALRVFHGM-PLKDVVSWNLVIGALVNCQRMDLAESYFK-------EMG 141
+ G NG ++EA+++ + M L+ V ++ + + C+ E K M
Sbjct: 66 LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125
Query: 142 ARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQK 201
+ V + VR G +V+A +F KM +++ +WN+++ GY G A L+ +
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185
Query: 202 MHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYL 261
M W + G + + F + TC I L R KE H ++
Sbjct: 186 M------LW---VGG------VKPDVYTFPCVLRTCGG-----IPDLARG---KEVHVHV 222
Query: 262 EKYPYS-NIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGL 320
+Y Y +I +I Y + G+V SA +F+ M RD+ WN MI G EN + EGL
Sbjct: 223 VRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGL 282
Query: 321 KFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMY 380
+ F M+ PD T TSV++ C L LGR IHA I +V N++ MY
Sbjct: 283 ELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMY 342
Query: 381 ARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV 440
G+ + A FS + DI+SW ++I G Y+ +KA++ + M KPD+IT
Sbjct: 343 LNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVA 402
Query: 441 GVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCV----VDLLGRFGLIDEAMNLLN 496
VLSAC+ G +D G +K ++ R Y V +++ + ID+A+++ +
Sbjct: 403 AVLSACATLGDLDTGVEL-----HKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFH 457
Query: 497 EIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERV-MELEPN 539
I + W +++ R++N I ++ M L+PN
Sbjct: 458 NIPRKNV----ISWTSIIAGLRLNNRCFEALIFLRQMKMTLQPN 497
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 179/385 (46%), Gaps = 34/385 (8%)
Query: 56 NTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGM-----P 110
N +A ++ N+ A VF M R++ +WN ++ GY G DEA+ ++H M
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGV 192
Query: 111 LKDVVSWNLVI---GALVNCQRMDLAESYFKEMGAR-DVASWTIMVNGLVREGRIVEARK 166
DV ++ V+ G + + R + G D+ ++ V+ G + AR
Sbjct: 193 KPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARL 252
Query: 167 LFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAA 226
LFD+MP +D+ +WN MI+GY +NG +LF M R L+ +D
Sbjct: 253 LFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAM--RGLS--------------VDPD 296
Query: 227 ISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYS-NIASWTNVIVGYFEMGEV 285
+ + CE +L L ++ H+Y+ ++ +I+ ++ Y G
Sbjct: 297 LMTLTSVISACE--------LLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSW 348
Query: 286 GSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTIC 345
A K+F M +D+ W MI G N L ++ + + M + PD T +VL+ C
Sbjct: 349 REAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSAC 408
Query: 346 SDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWN 405
+ L LD G ++H AIK + V+N +I MY++C I AL F ++P ++ISW
Sbjct: 409 ATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWT 468
Query: 406 SIICGLAYHGYAEKALELFERMRLT 430
SII GL + +AL +M++T
Sbjct: 469 SIIAGLRLNNRCFEALIFLRQMKMT 493
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 295 bits (754), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 177/625 (28%), Positives = 331/625 (52%), Gaps = 29/625 (4%)
Query: 11 NLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQG 70
N+ +P +T +N ++ Y A +F+++P+ ++F++N ++ ++ +
Sbjct: 31 NIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISE 90
Query: 71 AKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRM 130
+ F+ + RD VTWN +I GY +GL+ A++ ++ M ++D S NL L+ ++
Sbjct: 91 MESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM-MRDF-SANLTRVTLMTMLKL 148
Query: 131 DLAESYF---KEMGARDVA----SWTIMVNGLV----REGRIVEARKLFDKMPAKDVQAW 179
+ + K++ + + S+ ++ + L+ G I +A+K+F + ++ +
Sbjct: 149 SSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMY 208
Query: 180 NLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMP----E 235
N ++ G L G + A LF+ M ++D SW +I GL + AI F++M +
Sbjct: 209 NSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLK 267
Query: 236 TCEKTWNSIISVLIRNGLV---KEAHSYLEKYPYSN-IASWTNVIVGYFEMGEVGSAIKV 291
+ + S++ G + K+ H+ + + + + I + +I Y + + A V
Sbjct: 268 MDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTV 327
Query: 292 FELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTL 351
F+ M ++V W M+ G G+ EE +K F+ M+ SG PD+ T ++ C+++ +L
Sbjct: 328 FDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSL 387
Query: 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGL 411
+ G Q H +AI + TVSN+++T+Y +CG+I + F+ + + D +SW +++
Sbjct: 388 EEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAY 447
Query: 412 AYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR 471
A G A + ++LF++M KPD +T GV+SACS AGLV++G+ YF M ++Y + P
Sbjct: 448 AQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPS 507
Query: 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTV--WGALLGACRIHNNIKVGEIA 529
HY+C++DL R G ++EAM +N G+ P W LL ACR N+++G+ A
Sbjct: 508 IGHYSCMIDLFSRSGRLEEAMRFIN-----GMPFPPDAIGWTTLLSACRNKGNLEIGKWA 562
Query: 530 GERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHV 589
E ++EL+P++ Y +L+ +Y S G+ + ++ M+E VKKEPG SWI+ H
Sbjct: 563 AESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHS 622
Query: 590 FLSGDSSHPKFHRLRYLLNLLHTEI 614
F + D S P ++ L L+ +I
Sbjct: 623 FSADDESSPYLDQIYAKLEELNNKI 647
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 131/570 (22%), Positives = 228/570 (40%), Gaps = 116/570 (20%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLM-- 63
I E ++ F+K+P RD VTWNV+I GY +G + A+ +N M RD F+ N LM
Sbjct: 88 ISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM-MRD-FSANLTRVTLMTM 145
Query: 64 ---QSDN-------------------------------------VQGAKEVFDGMEVRDV 83
S N + AK+VF G++ R+
Sbjct: 146 LKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNT 205
Query: 84 VTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGAR 143
V +NS++ G + G+I++AL++F GM KD VSW +I L A F+EM +
Sbjct: 206 VMYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQ 264
Query: 144 DV-------ASWTIMVNGL--VREGRIVEA---RKLFDKMPAKDVQAWNLMIAGYLDNGC 191
+ S GL + EG+ + A R F + + +I Y C
Sbjct: 265 GLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQ----DHIYVGSALIDMYCKCKC 320
Query: 192 VGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETC----EKTWNSIISV 247
+ A+ +F +M +++ SW ++ G + R + A+ F M + T IS
Sbjct: 321 LHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISA 380
Query: 248 LIRNGLVKEAHSYLEKYPYSNIASWTNV----IVGYFEMGEVGSAIKVFELMTTRDVTVW 303
++E + K S + + V + Y + G++ + ++F M RD W
Sbjct: 381 CANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSW 440
Query: 304 NVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK 363
M+ + E ++ F +M + G PD T T V++ CS ++ G++ K
Sbjct: 441 TAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRY----FK 496
Query: 364 IARNQFTTVS-----NAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAE 418
+ +++ V + MI +++R G ++ A+ + +P
Sbjct: 497 LMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMP--------------------- 535
Query: 419 KALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTC 477
F PD I + +LSAC G ++ G++ + + L P A YT
Sbjct: 536 -------------FPPDAIGWTTLLSACRNKGNLEIGKWAAESLIE---LDPHHPAGYTL 579
Query: 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVSP 507
+ + G D L +R ++ P
Sbjct: 580 LSSIYASKGKWDSVAQLRRGMREKNVKKEP 609
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 7/218 (3%)
Query: 355 RQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYH 414
+ IH I+ T + N ++ YA + A F +P ++ SWN+++ +
Sbjct: 26 KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85
Query: 415 GYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAH 474
G + FE++ D +T+ ++ S +GLV ++ M +
Sbjct: 86 GLISEMESTFEKLP----DRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVT 141
Query: 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVM 534
++ L G + + ++ G E V LL ++ N+ A +
Sbjct: 142 LMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLL---YMYANVGCISDAKKVFY 198
Query: 535 ELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572
L+ N+ +Y L L+CG EDA ++F M+++ V
Sbjct: 199 GLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSV 236
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 294 bits (752), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 177/577 (30%), Positives = 302/577 (52%), Gaps = 46/577 (7%)
Query: 37 LDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISG-YVC 95
L+ A +F+++P+ + F +NT+I G V D+V+ + Y
Sbjct: 80 LEYARKVFDEIPKPNSFAWNTLIRAY-----ASGPDPVLSIWAFLDMVSESQCYPNKYTF 134
Query: 96 NGLIDEALRV--------FHGMPLK-----DVVSWNLVIGALVNCQRMDLAESYFKEMGA 142
LI A V HGM +K DV N +I +C +D A F +
Sbjct: 135 PFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKE 194
Query: 143 RDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKM 202
+DV SW M+NG V++G +A +LF KM ++DV+A ++ + G L + C +
Sbjct: 195 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL-SACAKI-------- 245
Query: 203 HDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLE 262
R+L +Q+ + + R++ ++ N+++ + + G +++A +
Sbjct: 246 --RNLEFGRQVCS-YIEENRVNVNLTLA-----------NAMLDMYTKCGSIEDAKRLFD 291
Query: 263 KYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKF 322
+ +WT ++ GY + +A +V M +D+ WN +I +N E L
Sbjct: 292 AMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIV 351
Query: 323 FVQMK-ESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYA 381
F +++ + + T S L+ C+ + L+LGR IH+ K V++A+I MY+
Sbjct: 352 FHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYS 411
Query: 382 RCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVG 441
+CG+++ + F+SV D+ W+++I GLA HG +A+++F +M+ + KP+ +TF
Sbjct: 412 KCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTN 471
Query: 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD 501
V ACS+ GLVD+ F M++ Y + P HY C+VD+LGR G +++A+ I A
Sbjct: 472 VFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKF---IEAM 528
Query: 502 GIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAK 561
I S +VWGALLGAC+IH N+ + E+A R++ELEP N G +++L+ +Y G+ E+
Sbjct: 529 PIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVS 588
Query: 562 RIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHP 598
+ M+ G+KKEPGCS I+I+ H FLSGD++HP
Sbjct: 589 ELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 121/494 (24%), Positives = 218/494 (44%), Gaps = 69/494 (13%)
Query: 4 ARIQEAQNLFDKMPQRDTVTWNVMIRGYFKN--------GFLD---NAMCLFNQMP---- 48
A ++ A+ +FD++P+ ++ WN +IR Y FLD + C N+
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFL 137
Query: 49 -------------------------ERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDV 83
D+F N++I ++ A +VF ++ +DV
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV 197
Query: 84 VTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNL-VIGALVNCQRMDLAE------SY 136
V+WNSMI+G+V G D+AL +F M +DV + ++ ++G L C ++ E SY
Sbjct: 198 VSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257
Query: 137 FKEMGAR-DVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVA 195
+E ++ M++ + G I +A++LFD M KD W M+ GY + A
Sbjct: 258 IEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAA 317
Query: 196 EDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMP-----ETCEKTWNSIISVLIR 250
++ M +D+ +W LI+ + + + A+ F ++ + + T S +S +
Sbjct: 318 REVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQ 377
Query: 251 NG---LVKEAHSYLEKYPYS-NIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVM 306
G L + HSY++K+ N + +I Y + G++ + +VF + RDV VW+ M
Sbjct: 378 VGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAM 437
Query: 307 IFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ-----A 361
I GL + G E + F +M+E+ P+ TFT+V CS +D + Q
Sbjct: 438 IGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYG 497
Query: 362 IKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIIS-WNSIICGLAYHGYAEKA 420
I + + + + R G ++ A+ ++PI S W +++ H A
Sbjct: 498 IVPEEKHYACI----VDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIH--ANLN 551
Query: 421 LELFERMRLTDFKP 434
L RL + +P
Sbjct: 552 LAEMACTRLLELEP 565
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 293 bits (749), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 190/642 (29%), Positives = 314/642 (48%), Gaps = 60/642 (9%)
Query: 24 WNVMIRGYFKNGFLDNAMCLFNQM------PER--------------------------- 50
+N +IRGY +G + A+ LF +M P++
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 51 ------DMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALR 104
D+F N+++ + + A++VFD M R+VV+W SMI GY +A+
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221
Query: 105 VFHGMPLKDVVSWN-----LVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLV--- 156
+F M + V+ N VI A + ++ E + + + +MV+ LV
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281
Query: 157 -REGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR----DLTSWK 211
+ I A++LFD+ A ++ N M + Y+ G A +F M D D S
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISML 341
Query: 212 QLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLI----RNGLVKEAHSYLEKYPYS 267
I+ R I S + ++W++I + LI + A ++
Sbjct: 342 SAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 401
Query: 268 NIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMK 327
+ +W +++ GY E GEV +A + FE M +++ WN +I GL + L EE ++ F M+
Sbjct: 402 TVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQ 461
Query: 328 -ESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNI 386
+ G + D T S+ + C L LDL + I+ K + ++ M++RCG+
Sbjct: 462 SQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDP 521
Query: 387 QSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446
+SA+ F+S+ D+ +W + I +A G AE+A+ELF+ M KPD + FVG L+AC
Sbjct: 522 ESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTAC 581
Query: 447 SYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS 506
S+ GLV QG+ F M + + P HY C+VDLLGR GL++EA+ L+ ++ +E +
Sbjct: 582 SHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDM---PMEPN 638
Query: 507 PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQ 566
+W +LL ACR+ N+++ A E++ L P +G Y++L+ +Y S GR D ++
Sbjct: 639 DVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLS 698
Query: 567 MKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLN 608
MKE G++K PG S IQI H F SGD SHP+ + +L+
Sbjct: 699 MKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLD 740
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 123/484 (25%), Positives = 217/484 (44%), Gaps = 61/484 (12%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNT-----VIA 60
+ A+ +FD+M +R+ V+W MI GY + F +A+ LF +M + T N+ VI+
Sbjct: 185 LDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVIS 244
Query: 61 GLMQSDNVQGAKEVF-----DGMEVRDVVT------------------------------ 85
+ ++++ ++V+ G+EV D++
Sbjct: 245 ACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDL 304
Query: 86 WNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNL-VIGALVNCQRMD---LAESYFKEMG 141
N+M S YV GL EAL VF+ M V + ++ A+ +C ++ +S +
Sbjct: 305 CNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVL 364
Query: 142 ARDVASWTIMVNGLV----REGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAED 197
SW + N L+ + R A ++FD+M K V WN ++AGY++NG V A +
Sbjct: 365 RNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWE 424
Query: 198 LFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQM--PETCEKTWNSIISVLIRNG--- 252
F+ M ++++ SW +I+GLV + AI F M E +++S+ G
Sbjct: 425 TFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484
Query: 253 ---LVKEAHSYLEKYPYS-NIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIF 308
L K + Y+EK ++ T ++ + G+ SA+ +F +T RDV+ W I
Sbjct: 485 ALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIG 544
Query: 309 GLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQ 368
+ E ++ F M E G PD F LT CS + G++I +K+
Sbjct: 545 AMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVS 604
Query: 369 FTTVS-NAMITMYARCGNIQSALLEFSSVPI--HDIISWNSIICGLAYHGYAEKALELFE 425
V M+ + R G ++ A+ +P+ +D+I WNS++ G E A E
Sbjct: 605 PEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVI-WNSLLAACRVQGNVEMAAYAAE 663
Query: 426 RMRL 429
++++
Sbjct: 664 KIQV 667
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 158/357 (44%), Gaps = 39/357 (10%)
Query: 254 VKEAHSYLEKYPYSN-IASWTNVIVGYFEMGEVGS---AIKVFELMTTRDVT-VWNVMIF 308
+K H L K N +++ T ++ E+G S A +VFE + ++N +I
Sbjct: 48 LKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIR 107
Query: 309 GLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQ 368
G + L E + F++M SG SPD TF L+ C+ G QIH +K+ +
Sbjct: 108 GYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAK 167
Query: 369 FTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERM- 427
V N+++ YA CG + SA F + +++SW S+ICG A +A+ A++LF RM
Sbjct: 168 DLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMV 227
Query: 428 RLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGL 487
R + P+ +T V V+SAC+ ++ G + ++N ++ + +VD+ +
Sbjct: 228 RDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSG-IEVNDLMVSALVDMYMKCNA 286
Query: 488 IDEAMNLLNEIRADGIEVSPTV------WGALLGACRIHNNIKVGEIAGERVMELEPNNS 541
ID A L +E A +++ + G A + N + + +R+ L +S
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346
Query: 542 GVYL--------------------------ILTEMYLSCGRREDAKRIFAQMKENGV 572
L L +MY+ C R++ A RIF +M V
Sbjct: 347 CSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTV 403
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 135/283 (47%), Gaps = 21/283 (7%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
M+ R A +FD+M + VTWN ++ GY +NG +D A F MPE+++ ++NT+I+
Sbjct: 383 MKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIIS 442
Query: 61 GLMQSDNVQGAKEVFDGMEVR-----DVVTWNSMISGYVCNGLIDEALRVFH-----GMP 110
GL+Q + A EVF M+ + D VT S+ S G +D A +++ G+
Sbjct: 443 GLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQ 502
Query: 111 LKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDK 170
L DV ++ C + A S F + RDV++WT + + G A +LFD
Sbjct: 503 L-DVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDD 561
Query: 171 MPAKDVQAWNLMIAGYL----DNGCVGVAEDLFQ---KMH--DRDLTSWKQLINGLVNSR 221
M + ++ + G L G V +++F K+H + + +++ L +
Sbjct: 562 MIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAG 621
Query: 222 RIDAAISYFKQMP-ETCEKTWNSIISVLIRNGLVKEAHSYLEK 263
++ A+ + MP E + WNS+++ G V+ A EK
Sbjct: 622 LLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEK 664
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 136/376 (36%), Gaps = 93/376 (24%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQM------PER-DMF 53
M+ I A+ LFD+ + N M Y + G A+ +FN M P+R M
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISML 341
Query: 54 TY--------------------------------NTVIAGLMQSDNVQGAKEVFDGMEVR 81
+ N +I M+ A +FD M +
Sbjct: 342 SAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 401
Query: 82 DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEM- 140
VVTWNS+++GYV NG +D A F MP K++VSWN +I LV + A F M
Sbjct: 402 TVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQ 461
Query: 141 ----------------------GARDVASW-----------------TIMVNGLVREGRI 161
GA D+A W T +V+ R G
Sbjct: 462 SQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDP 521
Query: 162 VEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSR 221
A +F+ + +DV AW I G A +LF M ++ L G + +
Sbjct: 522 ESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTAC 581
Query: 222 RIDAAISYFKQM-----------PETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYS-NI 269
+ K++ PE + + ++ +L R GL++EA +E P N
Sbjct: 582 SHGGLVQQGKEIFYSMLKLHGVSPE--DVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPND 639
Query: 270 ASWTNVIVGYFEMGEV 285
W +++ G V
Sbjct: 640 VIWNSLLAACRVQGNV 655
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 292 bits (748), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 155/442 (35%), Positives = 252/442 (57%), Gaps = 7/442 (1%)
Query: 173 AKDVQAWNLMIAGYLDNGCVGV--AEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYF 230
+ D+ N +I Y G +GV A LF+KM +RD SW ++ GLV + + A F
Sbjct: 149 SSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLF 208
Query: 231 KQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIK 290
+MP+ +WN+++ R + +A EK P N SW+ +++GY + G++ A
Sbjct: 209 DEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARV 268
Query: 291 VFELMT--TRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDL 348
+F+ M ++V W ++I G E L +E + QM SG D A S+L C++
Sbjct: 269 MFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTES 328
Query: 349 PTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSII 408
L LG +IH+ + V NA++ MYA+CGN++ A F+ +P D++SWN+++
Sbjct: 329 GLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTML 388
Query: 409 CGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFL 468
GL HG+ ++A+ELF RMR +PD +TF+ VL +C++AGL+D+G YF M+ Y L
Sbjct: 389 HGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDL 448
Query: 469 QPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEI 528
P+ HY C+VDLLGR G + EA+ ++ + +E + +WGALLGACR+HN + + +
Sbjct: 449 VPQVEHYGCLVDLLGRVGRLKEAIKVVQTM---PMEPNVVIWGALLGACRMHNEVDIAKE 505
Query: 529 AGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGH 588
+ +++L+P + G Y +L+ +Y + E I ++MK GV+K G S +++ DG H
Sbjct: 506 VLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIH 565
Query: 589 VFLSGDSSHPKFHRLRYLLNLL 610
F D SHPK ++ +L L
Sbjct: 566 EFTVFDKSHPKSDQIYQMLGSL 587
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/439 (26%), Positives = 210/439 (47%), Gaps = 50/439 (11%)
Query: 68 VQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNC 127
V+ A ++F+ M RD V+WNSM+ G V G + +A R+F MP +D++SWN ++ C
Sbjct: 170 VRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARC 229
Query: 128 QRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKM--PAKDVQAWNLMIAG 185
+ M A F++M R+ SW+ MV G + G + AR +FDKM PAK+V W ++IAG
Sbjct: 230 REMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAG 289
Query: 186 YLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSII 245
Y + G + A+ L +M + +GL + DAA SI+
Sbjct: 290 YAEKGLLKEADRLVDQM----------VASGL----KFDAAAVI-------------SIL 322
Query: 246 SVLIRNGLVK---EAHSYLEKYPYSNIASWTNVIVGYFEM----GEVGSAIKVFELMTTR 298
+ +GL+ HS L++ SN+ S V+ +M G + A VF + +
Sbjct: 323 AACTESGLLSLGMRIHSILKR---SNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKK 379
Query: 299 DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIH 358
D+ WN M+ GLG + G+E ++ F +M+ G PD TF +VL C+ +D G
Sbjct: 380 DLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYF 439
Query: 359 AQAIKIARNQFTTVSN--AMITMYARCGNIQSALLEFSSVPIH-DIISWNSIICGLAYHG 415
K+ + V + ++ + R G ++ A+ ++P+ +++ W +++ H
Sbjct: 440 YSMEKV-YDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHN 498
Query: 416 YAEKALELFERM-RLTDFKPDDITFVGVLSACS--YAGLVDQGRYYFDCMKNKYFLQPRS 472
+ A E+ + + +L P + + + + A + + G+ D MK+ +P
Sbjct: 499 EVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVAD----IRSKMKSMGVEKPSG 554
Query: 473 AHYTCVVDLLGRFGLIDEA 491
A + D + F + D++
Sbjct: 555 ASSVELEDGIHEFTVFDKS 573
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 168/345 (48%), Gaps = 51/345 (14%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQS 65
+++A LF+KM +RDTV+WN M+ G K G L +A LF++MP+RD+ ++NT++ G +
Sbjct: 170 VRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARC 229
Query: 66 DNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPL--KDVVSWNLVI-- 121
+ A E+F+ M R+ V+W++M+ GY G ++ A +F MPL K+VV+W ++I
Sbjct: 230 REMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAG 289
Query: 122 ----GALVNCQRM-----------DLA----------ESYFKEMGAR--------DVASW 148
G L R+ D A ES +G R ++ S
Sbjct: 290 YAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSN 349
Query: 149 TIMVNGLV----REGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHD 204
++N L+ + G + +A +F+ +P KD+ +WN M+ G +G A +LF +M
Sbjct: 350 AYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRR 409
Query: 205 R----DLTSWKQLINGLVNSRRIDAAISYFKQMPETCE-----KTWNSIISVLIRNGLVK 255
D ++ ++ ++ ID I YF M + + + + ++ +L R G +K
Sbjct: 410 EGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLK 469
Query: 256 EAHSYLEKYPY-SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRD 299
EA ++ P N+ W ++ EV A +V + + D
Sbjct: 470 EAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLD 514
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 146/360 (40%), Gaps = 64/360 (17%)
Query: 288 AIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSD 347
A++VF + +V + N +I +N + F +M+ G DN T+ +L CS
Sbjct: 70 AVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSG 129
Query: 348 LPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC------------------------ 383
L + + +H K+ + V NA+I Y+RC
Sbjct: 130 QSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189
Query: 384 ---------GNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP 434
G ++ A F +P D+ISWN+++ G A KA ELFE+M +
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMP----ER 245
Query: 435 DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNL 494
+ +++ ++ S AG ++ R FD M +T ++ GL+ EA L
Sbjct: 246 NTVSWSTMVMGYSKAGDMEMARVMFDKMP---LPAKNVVTWTIIIAGYAEKGLLKEADRL 302
Query: 495 LNEIRADGIEVSPTVWGALLGAC----------RIHNNIKVGEIAGERVMELEPNNSGVY 544
++++ A G++ ++L AC RIH+ +K + +N+ V
Sbjct: 303 VDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLG---------SNAYVL 353
Query: 545 LILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLR 604
L +MY CG + A +F N + K+ SW + G V G + F R+R
Sbjct: 354 NALLDMYAKCGNLKKAFDVF-----NDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMR 408
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 90/413 (21%), Positives = 176/413 (42%), Gaps = 65/413 (15%)
Query: 156 VREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLIN 215
VR V +R++F++ + NL L A+ + + +H+ DL +LI+
Sbjct: 7 VRAPSWVSSRRIFEERLQDLPKCANLNQVKQLH------AQIIRRNLHE-DLHIAPKLIS 59
Query: 216 GLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNG----------------------- 252
L R+ + A+ F Q+ E NS+I +N
Sbjct: 60 ALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFT 119
Query: 253 ---------------LVKEAHSYLEKYPYSNIASWTNVIVG-YFEMGEVG--SAIKVFEL 294
+VK H+++EK S+ N ++ Y G +G A+K+FE
Sbjct: 120 YPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEK 179
Query: 295 MTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLG 354
M+ RD WN M+ GL + + + F +M P D ++ ++L + +
Sbjct: 180 MSERDTVSWNSMLGGLVKAGELRDARRLFDEM----PQRDLISWNTMLDGYARCREMSKA 235
Query: 355 RQIHAQAIKIARNQFTTVS-NAMITMYARCGNIQSALLEFSSVPI--HDIISWNSIICGL 411
++ + + RN TVS + M+ Y++ G+++ A + F +P+ ++++W II G
Sbjct: 236 FELFEKMPE--RN---TVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGY 290
Query: 412 AYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR 471
A G ++A L ++M + K D + +L+AC+ +GL+ G +K + L
Sbjct: 291 AEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILK-RSNLGSN 349
Query: 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIK 524
+ ++D+ + G + +A ++ N+I + W +L +H + K
Sbjct: 350 AYVLNALLDMYAKCGNLKKAFDVFNDIPKKDL----VSWNTMLHGLGVHGHGK 398
Score = 40.4 bits (93), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 96/236 (40%), Gaps = 29/236 (12%)
Query: 347 DLP---TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIIS 403
DLP L+ +Q+HAQ I+ ++ ++ +I+ + C A+ F+ V ++
Sbjct: 25 DLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHL 84
Query: 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMK 463
NS+I A + +A +F M+ D+ T+ +L ACS G+ + +K
Sbjct: 85 CNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACS-------GQSWLPVVK 137
Query: 464 ------NKYFLQPRSAHYTCVVDLLGRFG--LIDEAMNLLNEIRADGIEVSPTVWGALLG 515
K L ++D R G + +AM L ++ E W ++LG
Sbjct: 138 MMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMS----ERDTVSWNSMLG 193
Query: 516 ACRIHNNIKVGEIAGERVM--ELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569
+K GE+ R + E+ + + + + Y C A +F +M E
Sbjct: 194 GL-----VKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPE 244
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 153/481 (31%), Positives = 273/481 (56%), Gaps = 16/481 (3%)
Query: 148 WTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDL 207
W ++ + G +V+ARK+FD+MP +D+ +WN+M+ GY + G + A LF +M ++D
Sbjct: 123 WNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDS 182
Query: 208 TSWKQLINGLVNSRRIDAAI---SYFKQMPETCEKTWNSIISV-------LIRNGLVKEA 257
SW ++ G V + + A+ S +++P + + I+V IR G KE
Sbjct: 183 YSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRG--KEI 240
Query: 258 HSYLEKYPY-SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLG 316
H ++ + S+ W++++ Y + G + A +F+ + +DV W MI ++
Sbjct: 241 HGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRW 300
Query: 317 EEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAM 376
EG F ++ S P+ TF VL C+DL T +LG+Q+H ++ + ++ S+++
Sbjct: 301 REGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSL 360
Query: 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD 436
+ MY +CGNI+SA P D++SW S+I G A +G ++AL+ F+ + + KPD
Sbjct: 361 VDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDH 420
Query: 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLN 496
+TFV VLSAC++AGLV++G +F + K+ L S HYTC+VDLL R G ++ ++++
Sbjct: 421 VTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVIS 480
Query: 497 EIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGR 556
E+ ++ S +W ++LG C + NI + E A + + ++EP N Y+ + +Y + G+
Sbjct: 481 EM---PMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGK 537
Query: 557 REDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIER 616
E+ ++ +M+E GV K PG SW +I HVF++ D+SHP ++++ L L +++
Sbjct: 538 WEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKE 597
Query: 617 E 617
E
Sbjct: 598 E 598
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 115/477 (24%), Positives = 209/477 (43%), Gaps = 71/477 (14%)
Query: 36 FLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGME----VRDVVTWNSMIS 91
L A+ L + + TY +I Q+ ++ K+V + + V +V WN ++
Sbjct: 69 LLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLR 128
Query: 92 GYV-CNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTI 150
Y C L+D A +VF MP +D+ SWN+++ ++ A F EM +D SWT
Sbjct: 129 MYAKCGSLVD-ARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTA 187
Query: 151 MVNGLVREGRIVEARKLFDKMP---------------------------AKDVQA----- 178
MV G V++ + EA L+ M K++
Sbjct: 188 MVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRA 247
Query: 179 --------WNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYF 230
W+ ++ Y GC+ A ++F K+ ++D+ SW +I+ S R S F
Sbjct: 248 GLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLF 307
Query: 231 KQMPETCEK----TWNSIISV---LIRNGLVKEAHSYLEKY---PYSNIASWTNVIVGYF 280
++ +CE+ T+ +++ L L K+ H Y+ + PYS +S +++ Y
Sbjct: 308 SELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASS--SLVDMYT 365
Query: 281 EMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTS 340
+ G + SA V + D+ W +I G +N +E LK+F + +SG PD+ TF +
Sbjct: 366 KCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVN 425
Query: 341 VLTICSDLPTLDLGRQIHAQAIKIARNQFTTVS-NAMITMYARCGNIQSALLEFSSVPIH 399
VL+ C+ ++ G + + R T+ ++ + AR G + S +P+
Sbjct: 426 VLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMK 485
Query: 400 -DIISWNSIICGLAYHG----YAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAG 450
W S++ G + +G E A ELF+ +P++ +T+V + + + AG
Sbjct: 486 PSKFLWASVLGGCSTYGNIDLAEEAAQELFK------IEPENPVTYVTMANIYAAAG 536
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 155/361 (42%), Gaps = 40/361 (11%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQM-----PERDMFTYNTVIA 60
++EA+ LFD+M ++D+ +W M+ GY K + A+ L++ M ++FT + +A
Sbjct: 167 LEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVA 226
Query: 61 GLMQSDNVQGAKEVFDGMEVR-----DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVV 115
++ KE+ G VR D V W+S++ Y G IDEA +F + KDVV
Sbjct: 227 AAAAVKCIRRGKEIH-GHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVV 285
Query: 116 SWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKD 175
SW +I R S F E+ G++ + +L ++
Sbjct: 286 SWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYM 345
Query: 176 VQ--------AWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAI 227
+ A + ++ Y G + A+ + DL SW LI G + + D A+
Sbjct: 346 TRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEAL 405
Query: 228 SYFKQMPETCEK----TWNSIISVLIRNGLVKEA----HSYLEKYPYSNIASWTNVIV-- 277
YF + ++ K T+ +++S GLV++ +S EK+ S+ + +V
Sbjct: 406 KYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDL 465
Query: 278 ----GYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGL---GENDLGEEGLKFFVQMKESG 330
G FE ++ S I + ++ +W ++ G G DL EE + +++
Sbjct: 466 LARSGRFE--QLKSVISEMPMKPSK--FLWASVLGGCSTYGNIDLAEEAAQELFKIEPEN 521
Query: 331 P 331
P
Sbjct: 522 P 522
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%)
Query: 316 GEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNA 375
G++ L+ VQ+ P +T+ +++ +CS L+ G+++H + N
Sbjct: 66 GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 125
Query: 376 MITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTD 431
++ MYA+CG++ A F +P D+ SWN ++ G A G E+A +LF+ M D
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKD 181
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 17/181 (9%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQM----PERDMFTYNTVIAG 61
I+ A+++ D P+ D V+W +I G +NG D A+ F+ + + D T+ V++
Sbjct: 370 IESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429
Query: 62 LMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVC-------NGLIDEALRVFHGMPLK-D 113
+ V+ E F + + ++ S Y C +G ++ V MP+K
Sbjct: 430 CTHAGLVEKGLEFFYSITEKHRLSHTS--DHYTCLVDLLARSGRFEQLKSVISEMPMKPS 487
Query: 114 VVSWNLVIGALVNCQRMDLAESYFKEM---GARDVASWTIMVNGLVREGRIVEARKLFDK 170
W V+G +DLAE +E+ + ++ M N G+ E K+ +
Sbjct: 488 KFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKR 547
Query: 171 M 171
M
Sbjct: 548 M 548
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 291 bits (744), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 186/680 (27%), Positives = 334/680 (49%), Gaps = 69/680 (10%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
+R ++ A+ ++D+MP ++TV+ N MI G+ K G + +A LF+ MP+R + T+ ++
Sbjct: 59 LRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMG 118
Query: 61 GLMQSDNVQGAKEVFDGM------EVRDVVTWNSMISGYVCNGLIDE-ALRVFHGMPLK- 112
++ + A ++F M + D VT+ +++ G CN + + A+ H +K
Sbjct: 119 WYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPG--CNDAVPQNAVGQVHAFAVKL 176
Query: 113 --DVVSW----NLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARK 166
D + N+++ + +R+DLA F+E+ +D ++ ++ G ++G E+
Sbjct: 177 GFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIH 236
Query: 167 LFDKMPAKDVQAWNLMIAGYLDNGCVGVAE-DLFQKMH--------DRDLTSWKQLINGL 217
LF KM Q + +G L VG+ + L Q++H RD + Q+++
Sbjct: 237 LFLKMRQSGHQPSDFTFSGVL-KAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFY 295
Query: 218 VNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEK----------YPYS 267
R+ F +MPE ++N +IS + + + + + +P++
Sbjct: 296 SKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFA 355
Query: 268 NIASWT----------------------------NVIVGYFEMGEV-GSAIKVFELMTTR 298
+ S N +V + E+ A +F+ + R
Sbjct: 356 TMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQR 415
Query: 299 DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIH 358
W +I G + L GLK F +M+ S D +TF +VL + +L LG+Q+H
Sbjct: 416 TTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLH 475
Query: 359 AQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAE 418
A I+ + + ++ MYA+CG+I+ A+ F +P + +SWN++I A +G E
Sbjct: 476 AFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGE 535
Query: 419 KALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCV 478
A+ F +M + +PD ++ +GVL+ACS+ G V+QG YF M Y + P+ HY C+
Sbjct: 536 AAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACM 595
Query: 479 VDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538
+DLLGR G EA L++E+ + E+ +W ++L ACRIH N + E A E++ +E
Sbjct: 596 LDLLGRNGRFAEAEKLMDEMPFEPDEI---MWSSVLNACRIHKNQSLAERAAEKLFSMEK 652
Query: 539 -NNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSH 597
++ Y+ ++ +Y + G E + + M+E G+KK P SW+++N HVF S D +H
Sbjct: 653 LRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTH 712
Query: 598 PKFHRLRYLLNLLHTEIERE 617
P + +N L EIERE
Sbjct: 713 PNGDEIVRKINELTAEIERE 732
Score = 162 bits (410), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 137/544 (25%), Positives = 253/544 (46%), Gaps = 34/544 (6%)
Query: 49 ERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHG 108
+ D N ++ L++ V A++V+D M ++ V+ N+MISG+V G + A +F
Sbjct: 45 DTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDA 104
Query: 109 MPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGAR------DVASWTIMVNGL------- 155
MP + VV+W +++G D A F++M D ++T ++ G
Sbjct: 105 MPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQN 164
Query: 156 -VREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLI 214
V + + FD P V N+++ Y + + +A LF+++ ++D ++ LI
Sbjct: 165 AVGQVHAFAVKLGFDTNPFLTVS--NVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLI 222
Query: 215 NGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRN-------GLVKEAHSYLEKYPYS 267
G +I F +M ++ + + S +++ L ++ H+ +S
Sbjct: 223 TGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFS 282
Query: 268 NIASWTNVIVGYFEMGE-VGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQM 326
AS N I+ ++ + V +F+ M D +NV+I + D E L FF +M
Sbjct: 283 RDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREM 342
Query: 327 KESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNI 386
+ G N F ++L+I ++L +L +GRQ+H QA+ + V N+++ MYA+C
Sbjct: 343 QCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMF 402
Query: 387 QSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSA- 445
+ A L F S+P +SW ++I G G L+LF +MR ++ + D TF VL A
Sbjct: 403 EEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKAS 462
Query: 446 CSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV 505
S+A L+ + + +++ S + +VD+ + G I +A+ + E+ D V
Sbjct: 463 ASFASLLLGKQLHAFIIRSGNLENVFSG--SGLVDMYAKCGSIKDAVQVFEEM-PDRNAV 519
Query: 506 SPTVWGALLGACRIHNNIKVGEIAGERVME--LEPNNSGVYLILTEMYLSCGRREDAKRI 563
S W AL+ A + + + A +++E L+P++ + +LT CG E
Sbjct: 520 S---WNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS-HCGFVEQGTEY 575
Query: 564 FAQM 567
F M
Sbjct: 576 FQAM 579
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 187/677 (27%), Positives = 326/677 (48%), Gaps = 85/677 (12%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
+ R E+ +F +P++++V+W+ +I G +N L A+ F +M + + ++ A
Sbjct: 227 KGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYAS 286
Query: 62 LMQS---------------------------------------DNVQGAKEVFDGMEVRD 82
+++S DN+Q A+ +FD E +
Sbjct: 287 VLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLN 346
Query: 83 VVTWNSMISGYVCNGLIDEALRVFH-----GMPLKDVV------SWNLVIGALVNCQRMD 131
++N+MI+GY +AL +FH G+ ++ + LV G Q
Sbjct: 347 RQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYG 406
Query: 132 LAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGC 191
LA K + DV ++ + + EA ++FD+M +D +WN +IA + NG
Sbjct: 407 LA---IKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 463
Query: 192 VGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWN--------S 243
LF M R + G + ++ Y ++ + K+ S
Sbjct: 464 GYETLFLFVSML-RSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCS 522
Query: 244 IISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV--- 300
+I + + G+++EA ++ F+ V ++ E M + +
Sbjct: 523 LIDMYSKCGMIEEAEKIHSRF---------------FQRANVSGTMEELEKMHNKRLQEM 567
Query: 301 -TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHA 359
WN +I G + E+ F +M E G +PD T+ +VL C++L + LG+QIHA
Sbjct: 568 CVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHA 627
Query: 360 QAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEK 419
Q IK + + ++ MY++CG++ + L F D ++WN++ICG A+HG E+
Sbjct: 628 QVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEE 687
Query: 420 ALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479
A++LFERM L + KP+ +TF+ +L AC++ GL+D+G YF MK Y L P+ HY+ +V
Sbjct: 688 AIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMV 747
Query: 480 DLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH-NNIKVGEIAGERVMELEP 538
D+LG+ G + A+ L+ E+ E +W LLG C IH NN++V E A ++ L+P
Sbjct: 748 DILGKSGKVKRALELIREM---PFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDP 804
Query: 539 NNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHP 598
+S Y +L+ +Y G E + M+ +KKEPGCSW+++ D HVFL GD +HP
Sbjct: 805 QDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHP 864
Query: 599 KFHRLRYLLNLLHTEIE 615
++ + L L+++E++
Sbjct: 865 RWEEIYEELGLIYSEMK 881
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 138/563 (24%), Positives = 256/563 (45%), Gaps = 57/563 (10%)
Query: 21 TVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEV 80
T N +++ Y + +A +F++MP RD+ ++N +I G +S+++ A F+ M V
Sbjct: 83 TFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPV 142
Query: 81 RDVVTWNSMISGYVCNGLIDEALRVFHGMPLK----DVVSWNLVIGALVNCQRMDLA--- 133
RDVV+WNSM+SGY+ NG +++ VF M + D ++ +++ + L
Sbjct: 143 RDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQI 202
Query: 134 ESYFKEMGA-RDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCV 192
+G DV + + +++ + R VE+ ++F +P K+ +W+ +IAG + N +
Sbjct: 203 HGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLL 262
Query: 193 GVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNG 252
+A F++M Q +N V+ S + + +C +R G
Sbjct: 263 SLALKFFKEM---------QKVNAGVSQ-------SIYASVLRSCAALSE------LRLG 300
Query: 253 LVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGE 312
AH+ + I T + Y + + A +F+ + +N MI G +
Sbjct: 301 GQLHAHALKSDFAADGIVR-TATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQ 359
Query: 313 NDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTV 372
+ G + L F ++ SG D + + V C+ + L G QI+ AIK + + V
Sbjct: 360 EEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCV 419
Query: 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDF 432
+NA I MY +C + A F + D +SWN+II +G + L LF M +
Sbjct: 420 ANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRI 479
Query: 433 KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAM 492
+PD+ TF +L AC+ L + +K+ + S+ ++D+ + G+I+EA
Sbjct: 480 EPDEFTFGSILKACTGGSLGYGMEIHSSIVKSG--MASNSSVGCSLIDMYSKCGMIEEAE 537
Query: 493 NLLNEI--RADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN-NSGVYLILTE 549
+ + RA+ V G + ++HN +R+ E+ + NS +
Sbjct: 538 KIHSRFFQRAN-------VSGTMEELEKMHN---------KRLQEMCVSWNS-----IIS 576
Query: 550 MYLSCGRREDAKRIFAQMKENGV 572
Y+ + EDA+ +F +M E G+
Sbjct: 577 GYVMKEQSEDAQMLFTRMMEMGI 599
Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 144/555 (25%), Positives = 237/555 (42%), Gaps = 58/555 (10%)
Query: 8 EAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMP----ERDMFTYNTVIAGLM 63
+A + F+ MP RD V+WN M+ GY +NG ++ +F M E D T+ ++
Sbjct: 132 KANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCS 191
Query: 64 QSDNVQGAKEVFDGMEVR-----DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWN 118
++ ++ G+ VR DVV ++++ Y E+LRVF G+P K+ VSW+
Sbjct: 192 FLEDTSLGMQI-HGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWS 250
Query: 119 LVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPA----K 174
+I V + LA +FKEM + + ++R + +L ++ A
Sbjct: 251 AIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKS 310
Query: 175 DVQAWNLMIAGYLD--NGCVGV--AEDLFQKMHDRDLTSWKQLINGLVNSRR-IDAAISY 229
D A ++ LD C + A+ LF + + S+ +I G A + +
Sbjct: 311 DFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLF 370
Query: 230 FKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWT-NVIVG------YFEM 282
+ M S+ V LVK L+ Y + +S + +V V Y +
Sbjct: 371 HRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKC 430
Query: 283 GEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVL 342
+ A +VF+ M RD WN +I +N G E L FV M S PD TF S+L
Sbjct: 431 QALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSIL 490
Query: 343 TICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA------LLEFSSV 396
C+ +L G +IH+ +K ++V ++I MY++CG I+ A + ++V
Sbjct: 491 KACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANV 549
Query: 397 P--------IHD------IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGV 442
+H+ +SWNSII G +E A LF RM PD T+ V
Sbjct: 550 SGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATV 609
Query: 443 LSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTC--VVDLLGRFG-LIDEAMNLLNEIR 499
L C+ G+ + K + +S Y C +VD+ + G L D + +R
Sbjct: 610 LDTCANLASAGLGKQIHAQVIKK---ELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLR 666
Query: 500 ADGIEVSPTVWGALL 514
D + W A++
Sbjct: 667 RDFV-----TWNAMI 676
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/307 (18%), Positives = 118/307 (38%), Gaps = 62/307 (20%)
Query: 320 LKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITM 379
+F S F+ V C+ L+LG+Q HA I T V N ++ +
Sbjct: 33 FSYFTDFLNQVNSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQV 92
Query: 380 YARCGNIQSALLEFSSVPIHD-------------------------------IISWNSII 408
Y + SA + F +P+ D ++SWNS++
Sbjct: 93 YTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSML 152
Query: 409 CGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY-------------------- 448
G +G + K++E+F M + D TF +L CS+
Sbjct: 153 SGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCD 212
Query: 449 ------AGLVD---QGRYYFDCMKN-KYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEI 498
+ L+D +G+ + + ++ + + S ++ ++ + L+ A+ E+
Sbjct: 213 TDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEM 272
Query: 499 RADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT-EMYLSCGRR 557
+ VS +++ ++L +C + +++G ++ + G+ T +MY C
Sbjct: 273 QKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNM 332
Query: 558 EDAKRIF 564
+DA+ +F
Sbjct: 333 QDAQILF 339
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 187/603 (31%), Positives = 306/603 (50%), Gaps = 43/603 (7%)
Query: 36 FLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVC 95
+LD ++ + + ++F++N I G +S+N KE F + + M+ C
Sbjct: 102 YLDYSVKILKGIENPNIFSWNVTIRGFSESEN---PKESF--------LLYKQMLRHGCC 150
Query: 96 NGLIDE-----ALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTI 150
D +V + L + ++++G ++ R++L S+ AS
Sbjct: 151 ESRPDHFTYPVLFKVCADLRLSSL--GHMILGHVLKL-RLELV-SHVHNASIHMFASCGD 206
Query: 151 MVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSW 210
M N ARK+FD+ P +D+ +WN +I GY G A +++ M +
Sbjct: 207 MEN----------ARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPD 256
Query: 211 KQLINGLVNSRRIDAAISYFKQMPETCEKTW--------NSIISVLIRNGLVKEAHSYLE 262
+ GLV+S + ++ K+ E ++ N+++ + + G + EA +
Sbjct: 257 DVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFD 316
Query: 263 KYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKF 322
I SWT +I GY G + + K+F+ M +DV +WN MI G + G++ L
Sbjct: 317 NLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALAL 376
Query: 323 FVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYAR 382
F +M+ S PD T L+ CS L LD+G IH K + + + +++ MYA+
Sbjct: 377 FQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAK 436
Query: 383 CGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGV 442
CGNI AL F + + +++ +II GLA HG A A+ F M PD+ITF+G+
Sbjct: 437 CGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGL 496
Query: 443 LSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG 502
LSAC + G++ GR YF MK+++ L P+ HY+ +VDLLGR GL++EA L+ +
Sbjct: 497 LSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESM---P 553
Query: 503 IEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKR 562
+E VWGALL CR+H N+++GE A ++++EL+P++SG+Y++L MY EDAKR
Sbjct: 554 MEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKR 613
Query: 563 IFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLL--HTEIEREILF 620
M E GV+K PGCS I++N F+ D S P+ ++ L+ L H +LF
Sbjct: 614 ARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHMRSSLSVLF 673
Query: 621 DAY 623
Y
Sbjct: 674 SEY 676
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 127/480 (26%), Positives = 217/480 (45%), Gaps = 74/480 (15%)
Query: 23 TWNVMIRGYFKNGFLDNAMCLFNQM-------PERDMFTY-------------------- 55
+WNV IRG+ ++ + L+ QM D FTY
Sbjct: 120 SWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMIL 179
Query: 56 ---------------NTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLID 100
N I +++ A++VFD VRD+V+WN +I+GY G +
Sbjct: 180 GHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAE 239
Query: 101 EALRVFHGMPLKDVVSWNL-VIGALVNCQRM-DLAE-----SYFKEMGARDVASWTI-MV 152
+A+ V+ M + V ++ +IG + +C + DL Y KE G R TI +V
Sbjct: 240 KAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLR----MTIPLV 295
Query: 153 NGLV----REGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLT 208
N L+ + G I EAR++FD + + + +W MI+GY G + V+ LF M ++D+
Sbjct: 296 NALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVV 355
Query: 209 SWKQLINGLVNSRRIDAAISYFKQMPETCEK----TWNSIISVLIRNGLVKEA---HSYL 261
W +I G V ++R A++ F++M + K T +S + G + H Y+
Sbjct: 356 LWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYI 415
Query: 262 EKYPYS-NIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGL 320
EKY S N+A T+++ Y + G + A+ VF + TR+ + +I GL + +
Sbjct: 416 EKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAI 475
Query: 321 KFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ-AIKIARNQFTTVSNAMITM 379
+F +M ++G +PD TF +L+ C + GR +Q + N + M+ +
Sbjct: 476 SYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDL 535
Query: 380 YARCGNIQSALLEFSSVPIH-DIISWNSIICGLAYHGYAEKALELFERM--RLTDFKPDD 436
R G ++ A S+P+ D W +++ G HG +EL E+ +L + P D
Sbjct: 536 LGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHG----NVELGEKAAKKLLELDPSD 591
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/418 (24%), Positives = 173/418 (41%), Gaps = 95/418 (22%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQS 65
++ A+ +FD+ P RD V+WN +I GY K G + A+ ++ M + + + GL+ S
Sbjct: 207 MENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSS 266
Query: 66 DNVQG---------------------------------------AKEVFDGMEVRDVVTW 86
++ G A+ +FD +E R +V+W
Sbjct: 267 CSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSW 326
Query: 87 NSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEM------ 140
+MISGY GL+D + ++F M KDVV WN +IG V +R A + F+EM
Sbjct: 327 TTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTK 386
Query: 141 ----------------GARDVASW-----------------TIMVNGLVREGRIVEARKL 167
GA DV W T +V+ + G I EA +
Sbjct: 387 PDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSV 446
Query: 168 FDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR----DLTSWKQLINGLVNSRRI 223
F + ++ + +I G +G A F +M D D ++ L++ + I
Sbjct: 447 FHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMI 506
Query: 224 DAAISYFKQMPETCE-----KTWNSIISVLIRNGLVKEAHSYLEKYPY-SNIASWTNVIV 277
YF QM K ++ ++ +L R GL++EA +E P ++ A W ++
Sbjct: 507 QTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLF 566
Query: 278 GY-----FEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESG 330
G E+GE +A K+ EL D ++ ++ GE ++ E+ + M E G
Sbjct: 567 GCRMHGNVELGE-KAAKKLLEL-DPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERG 622
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 290 bits (741), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 185/629 (29%), Positives = 327/629 (51%), Gaps = 47/629 (7%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDM----FTYNTVIAG 61
+++A+ +FD MP+R+ V++ +I GY +NG A+ L+ +M + D+ F + ++I
Sbjct: 118 LRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKA 177
Query: 62 LMQSDNV----QGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSW 117
S +V Q +V ++ N++I+ YV + +A RVF+G+P+KD++SW
Sbjct: 178 CASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISW 237
Query: 118 NLVIGALVNCQRMDLAESYFKEMGARDV--------ASWTIMVNGLVRE--GRIVEARKL 167
+ +I A S+ KEM + V S + L+R G + +
Sbjct: 238 SSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCI 297
Query: 168 FDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAI 227
++ + +L Y G + A +F ++ D SW +I GL N+ D A+
Sbjct: 298 KSELAGNAIAGCSL-CDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAV 356
Query: 228 SYFKQMPET-------------CEKTWNSIISVLIRNGLVKEAHSYLEKYPY-SNIASWT 273
S F QM + C +T +S G+ + HSY+ K+ + +++
Sbjct: 357 SVFSQMRSSGFIPDAISLRSLLCAQTKPMALS----QGM--QIHSYIIKWGFLADLTVCN 410
Query: 274 NVIVGYFEMGEVGSAIKVFE-LMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPS 332
+++ Y ++ +FE D WN ++ +++ E L+ F M S
Sbjct: 411 SLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECE 470
Query: 333 PDNATFTSVLTICSDLPTLDLGRQIHAQAIK--IARNQFTTVSNAMITMYARCGNIQSAL 390
PD+ T ++L C ++ +L LG Q+H ++K +A QF + N +I MYA+CG++ A
Sbjct: 471 PDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQF--IKNGLIDMYAKCGSLGQAR 528
Query: 391 LEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAG 450
F S+ D++SW+++I G A G+ E+AL LF+ M+ +P+ +TFVGVL+ACS+ G
Sbjct: 529 RIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVG 588
Query: 451 LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVW 510
LV++G + M+ ++ + P H +CVVDLL R G ++EA ++E++ +E VW
Sbjct: 589 LVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMK---LEPDVVVW 645
Query: 511 GALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570
LL AC+ N+ + + A E +++++P NS +++L M+ S G E+A + + MK++
Sbjct: 646 KTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKH 705
Query: 571 GVKKEPGCSWIQINDGGHVFLSGDSSHPK 599
VKK PG SWI+I D H+F + D HP+
Sbjct: 706 DVKKIPGQSWIEIEDKIHIFFAEDIFHPE 734
Score = 139 bits (349), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 142/581 (24%), Positives = 252/581 (43%), Gaps = 91/581 (15%)
Query: 43 LFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEA 102
+ N + D N +++ + +++ A+EVFD M R++V++ S+I+GY NG EA
Sbjct: 93 ILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEA 152
Query: 103 LRVFHGMPLKDVV----SWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGL--- 155
+R++ M +D+V ++ +I A + + L + ++ + +S I N L
Sbjct: 153 IRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAM 212
Query: 156 -VREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLI 214
VR ++ +A ++F +P KD+ +W+ +IAG+ G L+ K+++
Sbjct: 213 YVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLG-----------FEFEALSHLKEML 261
Query: 215 N-GLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYS-NIASW 272
+ G+ + F + C S L+R + H K + N +
Sbjct: 262 SFGVFHPNEY-----IFGSSLKAC--------SSLLRPDYGSQIHGLCIKSELAGNAIAG 308
Query: 273 TNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPS 332
++ Y G + SA +VF+ + D WNV+I GL N +E + F QM+ SG
Sbjct: 309 CSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFI 368
Query: 333 PDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLE 392
PD + S+L + L G QIH+ IK TV N+++TMY C ++
Sbjct: 369 PDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNL 428
Query: 393 FSSVPIH-DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC----- 446
F + D +SWN+I+ H + L LF+ M +++ +PD IT +L C
Sbjct: 429 FEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISS 488
Query: 447 --------SYA-------------GLVD---------QGRYYFDCMKNKYFLQPRSAHYT 476
Y+ GL+D Q R FD M N+ + ++
Sbjct: 489 LKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVS-----WS 543
Query: 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEI-AGERVME 535
++ + G +EA+ L E+++ GIE + + +L AC VG + G ++
Sbjct: 544 TLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACS-----HVGLVEEGLKLYA 598
Query: 536 LEPNNSGVYLILTEMYLSC--------GRREDAKRIFAQMK 568
G+ T+ + SC GR +A+R +MK
Sbjct: 599 TMQTEHGIS--PTKEHCSCVVDLLARAGRLNEAERFIDEMK 637
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 138/328 (42%), Gaps = 59/328 (17%)
Query: 283 GEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFF-VQMKESGPSPDNATFTSV 341
V S IK ELM N I L +++ E L+ F K S T+ S+
Sbjct: 22 SSVVSTIKTEELM--------NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISL 73
Query: 342 LTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDI 401
+ CS +L GR+IH + T ++N +++MY +CG+++ A F +P ++
Sbjct: 74 ICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNL 133
Query: 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYY--- 458
+S+ S+I G + +G +A+ L+ +M D PD F ++ AC+ + V G+
Sbjct: 134 VSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQ 193
Query: 459 ----------------------FDCMKNK---YFLQPRS--AHYTCVVDLLGRFGLIDEA 491
F+ M + ++ P ++ ++ + G EA
Sbjct: 194 VIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEA 253
Query: 492 MNLLNEIRADGI-EVSPTVWGALLGAC----------RIHNNIKVGEIAGERVMELEPNN 540
++ L E+ + G+ + ++G+ L AC +IH E+AG +
Sbjct: 254 LSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCS--- 310
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMK 568
L +MY CG A+R+F Q++
Sbjct: 311 ------LCDMYARCGFLNSARRVFDQIE 332
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 288 bits (738), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 190/639 (29%), Positives = 322/639 (50%), Gaps = 29/639 (4%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMP----ERDMFTYNTVIAG 61
+++A LFD+M + D WNVMI+G+ G A+ +++M + D FTY VI
Sbjct: 80 MEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKS 139
Query: 62 LMQSDNVQGAKEVFDGM----EVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSW 117
+ +++ K++ + V DV NS+IS Y+ G +A +VF MP +D+VSW
Sbjct: 140 VAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSW 199
Query: 118 NLVIGALVNCQRMDLAESYFKEM---GARDVASWTIMVNGLV------REGRIVEARKLF 168
N +I + + FKEM G + T+ G + G+ + +
Sbjct: 200 NSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVR 259
Query: 169 DKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAIS 228
++ DV ++ Y G V AE +F M R++ +W +I + R+ A
Sbjct: 260 SRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFL 319
Query: 229 YFKQMPETCEKTWNSIISV-LIRNGLVKEA---HSYLEKYPY-SNIASWTNVIVGYFEMG 283
F++M E + I S+ L+ + E H Y + + ++ T +I Y E G
Sbjct: 320 CFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECG 379
Query: 284 EVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLT 343
++ SA +F+ M ++V WN +I +N L+ F ++ +S PD+ T S+L
Sbjct: 380 QLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILP 439
Query: 344 ICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIIS 403
++ +L GR+IHA +K T + N+++ MYA CG+++ A F+ + + D++S
Sbjct: 440 AYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVS 499
Query: 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMK 463
WNSII A HG+ ++ LF M + P+ TF +L+ACS +G+VD+G YF+ MK
Sbjct: 500 WNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMK 559
Query: 464 NKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT--VWGALLGACRIHN 521
+Y + P HY C++DL+GR G A L E + PT +WG+LL A R H
Sbjct: 560 REYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEE-----MPFVPTARIWGSLLNASRNHK 614
Query: 522 NIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWI 581
+I + E A E++ ++E +N+G Y++L MY GR ED RI M+ G+ + S +
Sbjct: 615 DITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTV 674
Query: 582 QINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIEREILF 620
+ HVF +GD SH +++ +L+++ + E ++
Sbjct: 675 EAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIY 713
Score = 102 bits (255), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 151/339 (44%), Gaps = 39/339 (11%)
Query: 268 NIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMK 327
N + T + G+ + + A+++F+ M D +WNVMI G L E ++F+ +M
Sbjct: 63 NDPALTRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMV 122
Query: 328 ESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387
+G D T+ V+ + + +L+ G++IHA IK+ V N++I++Y + G
Sbjct: 123 FAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAW 182
Query: 388 SALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACS 447
A F +P DI+SWNS+I G G +L LF+ M FKPD + + L ACS
Sbjct: 183 DAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACS 242
Query: 448 YAGLVDQGRYYFDCMKNKYFLQPRSAHY-TCVVDLLGRFGLIDEAMNLLNEIRADGIEVS 506
+ G+ C + ++ T ++D+ ++G + A + N + I+ +
Sbjct: 243 HVYSPKMGK-EIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGM----IQRN 297
Query: 507 PTVWGALLGACRIHNNIKVGEIAGERVME---LEPNN-SGVYLI---------------- 546
W ++G + + + +++ E L+P+ + + L+
Sbjct: 298 IVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAM 357
Query: 547 -------------LTEMYLSCGRREDAKRIFAQMKENGV 572
L +MY CG+ + A+ IF +M E V
Sbjct: 358 RRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNV 396
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 103/458 (22%), Positives = 183/458 (39%), Gaps = 89/458 (19%)
Query: 158 EGRIVE-ARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKM----HDRDLTSWKQ 212
+ R++E A +LFD+M D WN+MI G+ G A + +M D ++
Sbjct: 76 DSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPF 135
Query: 213 L------INGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPY 266
+ I+ L ++I A + + + NS+IS+ ++ G +A E+ P
Sbjct: 136 VIKSVAGISSLEEGKKIHAMVIKLGFVSDV--YVCNSLISLYMKLGCAWDAEKVFEEMPE 193
Query: 267 SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQM 326
+I SW ++I GY +G+ G L F +M
Sbjct: 194 RDIVSWNSMISGYLALGD-------------------------------GFSSLMLFKEM 222
Query: 327 KESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT----VSNAMITMYAR 382
+ G PD + S L CS + + +G++IH A+ R++ T V +++ MY++
Sbjct: 223 LKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAV---RSRIETGDVMVMTSILDMYSK 279
Query: 383 CGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTD-FKPDDITFVG 441
G + A F+ + +I++WN +I A +G A F++M + +PD IT +
Sbjct: 280 YGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSIN 339
Query: 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLID------------ 489
+L A + + +GR + FL P T ++D+ G G +
Sbjct: 340 LLPASA----ILEGRTIHGYAMRRGFL-PHMVLETALIDMYGECGQLKSAEVIFDRMAEK 394
Query: 490 -------------------EAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG-EIA 529
A+ L E+ + T ++L A ++ G EI
Sbjct: 395 NVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIH 454
Query: 530 GERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567
V +N+ + L MY CG EDA++ F +
Sbjct: 455 AYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHI 492
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 72/130 (55%), Gaps = 12/130 (9%)
Query: 4 ARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLM 63
+++ A+ +FD+M +++ ++WN +I Y +NG +A+ LF ++ + + +T IA ++
Sbjct: 379 GQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASIL 438
Query: 64 QSDNVQGAKEVFDGMEVR----------DVVTWNSMISGYVCNGLIDEALRVFHGMPLKD 113
+ + + +G E+ + + NS++ Y G +++A + F+ + LKD
Sbjct: 439 PA--YAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKD 496
Query: 114 VVSWNLVIGA 123
VVSWN +I A
Sbjct: 497 VVSWNSIIMA 506
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 288 bits (738), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 191/692 (27%), Positives = 330/692 (47%), Gaps = 100/692 (14%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNT--- 57
++ +++E + LF++MP RD V WN+M++ Y + GF + A+ L + +
Sbjct: 191 LKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLR 250
Query: 58 VIAGLMQSDNVQGAKEVF----DGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKD 113
++A + D+ G + F D V +++ N +S Y+ +G L+ F M D
Sbjct: 251 LLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESD 310
Query: 114 V----VSW-----------NLVIGALVNCQRMDL------------------------AE 134
V V++ +L +G V+C + L A
Sbjct: 311 VECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFAR 370
Query: 135 SYFKEMGARDVASWTIMVNGLVREGRIVEARKLF----------------------DKMP 172
+ F M RD+ SW ++ G+ + G VEA LF +P
Sbjct: 371 TVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLP 430
Query: 173 -----AKDVQAWNL-------------MIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLI 214
+K V + +I Y N C+ AE LF++ H+ DL +W ++
Sbjct: 431 EGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMM 489
Query: 215 NGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRN-GLV------KEAHSYLEKYPYS 267
G S + F M + E++ + ++ + + G + K+ H+Y K Y
Sbjct: 490 AGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGY- 548
Query: 268 NIASW--TNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQ 325
++ W + ++ Y + G++ +A F+ + D W MI G EN E F Q
Sbjct: 549 DLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQ 608
Query: 326 MKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN 385
M+ G PD T ++ S L L+ GRQIHA A+K+ V +++ MYA+CG+
Sbjct: 609 MRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGS 668
Query: 386 IQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSA 445
I A F + + +I +WN+++ GLA HG ++ L+LF++M+ KPD +TF+GVLSA
Sbjct: 669 IDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSA 728
Query: 446 CSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV 505
CS++GLV + + M Y ++P HY+C+ D LGR GL+ +A NL+ + +E
Sbjct: 729 CSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESM---SMEA 785
Query: 506 SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565
S +++ LL ACR+ + + G+ +++ELEP +S Y++L+ MY + + ++ K
Sbjct: 786 SASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLART 845
Query: 566 QMKENGVKKEPGCSWIQINDGGHVFLSGDSSH 597
MK + VKK+PG SWI++ + H+F+ D S+
Sbjct: 846 MMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSN 877
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 149/605 (24%), Positives = 246/605 (40%), Gaps = 105/605 (17%)
Query: 9 AQNLFDKMPQRDTVTWNVMIRGYFKNGF-----LDNAMCLFNQMPERDMFTYNTVIAGLM 63
A+ +FDKMP RD V+WN ++ Y ++ + A LF + + ++T ++ ++
Sbjct: 93 ARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPML 152
Query: 64 QSDNVQG---AKEVFDGMEVRDVVTWNSMISGYVCN-----GLIDEALRVFHGMPLKDVV 115
+ G A E F G + + + ++G + N G + E +F MP +DVV
Sbjct: 153 KLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVV 212
Query: 116 SWNLVIGALVNC----QRMDLAESYFK------EMGAR----------DVASWTIMVNG- 154
WNL++ A + + +DL+ ++ E+ R D NG
Sbjct: 213 LWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGN 272
Query: 155 -----------------LVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAED 197
+ G+ K F M DV+ + L +
Sbjct: 273 DASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLA 332
Query: 198 LFQKMH--------DRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLI 249
L Q++H D LT LIN R+ A + F M E +WNS+I+ +
Sbjct: 333 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIA 392
Query: 250 RNGL--------------------------VKEAHSYLEKYPYS----------NIASWT 273
+NGL +K A S E S N S +
Sbjct: 393 QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDS 452
Query: 274 NVIVGYFEMGEVGSAIKVFELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESG 330
V + +K E++ R D+ WN M+ G ++ G + LK F M + G
Sbjct: 453 FVSTALIDAYSRNRCMKEAEILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQG 512
Query: 331 PSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSAL 390
D+ T +V C L ++ G+Q+HA AIK + VS+ ++ MY +CG++ +A
Sbjct: 513 ERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQ 572
Query: 391 LEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAG 450
F S+P+ D ++W ++I G +G E+A +F +MRL PD+ T + A S
Sbjct: 573 FAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLT 632
Query: 451 LVDQGR-YYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTV 509
++QGR + + +K P T +VD+ + G ID+A L I I T
Sbjct: 633 ALEQGRQIHANALKLNCTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMMNI----TA 686
Query: 510 WGALL 514
W A+L
Sbjct: 687 WNAML 691
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 165/650 (25%), Positives = 269/650 (41%), Gaps = 131/650 (20%)
Query: 13 FDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQS-----DN 67
F++ P+R + N +I Y K G L A +F++MP+RD+ ++N+++A QS +N
Sbjct: 68 FEENPERFLI--NNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVEN 125
Query: 68 VQGAKEVFDGMEVRDVVTWNSMI----------SGYVCNGLIDEALRVFHGMPLKDVVSW 117
+Q A +F + +DVV + M SGYV A FHG K +
Sbjct: 126 IQQAFLLFRILR-QDVVYTSRMTLSPMLKLCLHSGYVW------ASESFHGYACKIGLDG 178
Query: 118 N-LVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDV 176
+ V GALVN Y K G V+EG++ LF++MP +DV
Sbjct: 179 DEFVAGALVNI--------YLK--------------FGKVKEGKV-----LFEEMPYRDV 211
Query: 177 QAWNLMIAGYLDNGCVGVAEDLFQKMH--------------------DRDLTSWKQLING 216
WNLM+ YL+ G A DL H D D K NG
Sbjct: 212 VLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANG 271
Query: 217 ------------------LVNSRRIDAAISYFKQMPET---CEK-TWNSIISVLIRN--- 251
++S + A + F M E+ C++ T+ +++ ++
Sbjct: 272 NDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSL 331
Query: 252 GLVKEAHSYLEKYPYSNIASWTNVIVG-YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGL 310
L ++ H K + + +N ++ Y ++ + G A VF+ M+ RD+ WN +I G+
Sbjct: 332 ALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGI 391
Query: 311 GENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPT-LDLGRQIHAQAIKIARNQF 369
+N L E + F+Q+ G PD T TSVL S LP L L +Q+H AIKI
Sbjct: 392 AQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSD 451
Query: 370 TTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRL 429
+ VS A+I Y+R ++ A + F D+++WN+++ G K L+LF M
Sbjct: 452 SFVSTALIDAYSRNRCMKEAEILFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLFALMHK 510
Query: 430 TDFKPDDITFVGVLSACSYAGLVDQGR-----------------------YYFDC--MKN 464
+ DD T V C + ++QG+ Y C M
Sbjct: 511 QGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSA 570
Query: 465 KYFL-----QPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI 519
F P +T ++ G + A ++ +++R G+ L A
Sbjct: 571 AQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSC 630
Query: 520 HNNIKVGEIAGERVMELE-PNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568
++ G ++L N+ V L +MY CG +DA +F +++
Sbjct: 631 LTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIE 680
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 351 LDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICG 410
L LG+ HA+ + N + N +I+MY++CG++ A F +P D++SWNSI+
Sbjct: 55 LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114
Query: 411 LAYHGYA-----EKALELFERMRLTDFKPDDITFVGVLSACSYAGLV 452
A ++A LF +R +T +L C ++G V
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 286 bits (731), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 176/532 (33%), Positives = 282/532 (53%), Gaps = 29/532 (5%)
Query: 79 EVRDVVTWNSMISGYVCNGLIDEALRVF-----HGMPLKDVVSWNLVIGALVNCQRMDLA 133
EV D WN++I + +AL + +G+ + D S +LV+ A C R+
Sbjct: 82 EVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSV-DKFSLSLVLKA---CSRLGFV 137
Query: 134 ES------YFKEMGA-RDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGY 186
+ + K+ G D+ ++ ++ G + +R++FD+MP +D ++N MI GY
Sbjct: 138 KGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGY 197
Query: 187 LDNGCVGVAEDLFQ--KMHDRDLTSWKQLINGLV-NSRRIDAAISYFKQMPETCEKTWNS 243
+ G + A +LF M ++L SW +I+G S +D A F MPE +WNS
Sbjct: 198 VKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNS 257
Query: 244 IISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVW 303
+I +++G +++A + P ++ +W +I GY ++G V A +F+ M RDV +
Sbjct: 258 MIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAY 317
Query: 304 NVMIFGLGENDLGEEGLKFFVQM-KESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAI 362
N M+ G +N E L+ F M KES PD+ T VL + L L +H +
Sbjct: 318 NSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH---L 374
Query: 363 KIARNQF---TTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEK 419
I QF + A+I MY++CG+IQ A+L F + I WN++I GLA HG E
Sbjct: 375 YIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGES 434
Query: 420 ALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479
A ++ ++ KPDDITFVGVL+ACS++GLV +G F+ M+ K+ ++PR HY C+V
Sbjct: 435 AFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMV 494
Query: 480 DLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539
D+L R G I+ A NL+ E+ +E + +W L AC H + GE+ + ++
Sbjct: 495 DILSRSGSIELAKNLIEEMP---VEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGY 551
Query: 540 NSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFL 591
N Y++L+ MY S G +D +R+ MKE ++K PGCSWI+++ H F
Sbjct: 552 NPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFF 603
Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 208/420 (49%), Gaps = 32/420 (7%)
Query: 20 DTVTWNVMIRGYFKNGFLDNAMCLFNQMPE----RDMFTYNTVIAGLMQSDNVQGAKEVF 75
D + +++++ + GF+ M + + + D+F N +I ++ + ++++F
Sbjct: 120 DKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMF 179
Query: 76 DGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMP--LKDVVSWNLVI-GALVNCQRMDL 132
D M RD V++NSMI GYV GLI A +F MP +K+++SWN +I G +D+
Sbjct: 180 DRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDI 239
Query: 133 AESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCV 192
A F +M +D+ SW M++G V+ GRI +A+ LFD MP +DV W MI GY G V
Sbjct: 240 ASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFV 299
Query: 193 GVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETC-----EKTWNSIISV 247
A+ LF +M RD+ ++ ++ G V ++ A+ F M + + T ++
Sbjct: 300 HHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPA 359
Query: 248 LIRNGLVKEA---HSYL-EKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVW 303
+ + G + +A H Y+ EK Y +I Y + G + A+ VFE + + + W
Sbjct: 360 IAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHW 419
Query: 304 NVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSD-------LPTLDLGRQ 356
N MI GL + LGE +Q++ PD+ TF VL CS L +L R+
Sbjct: 420 NAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRR 479
Query: 357 IHAQAIKIARNQFTTVSNAMITMYARCGNIQSA--LLEFSSVPIHDIISWNSIICGLAYH 414
H ++ M+ + +R G+I+ A L+E V +D+I W + + ++H
Sbjct: 480 KHKIEPRLQH------YGCMVDILSRSGSIELAKNLIEEMPVEPNDVI-WRTFLTACSHH 532
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 190/397 (47%), Gaps = 25/397 (6%)
Query: 9 AQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPE--RDMFTYNTVIAGLMQ-S 65
++ +FD+MP+RD+V++N MI GY K G + +A LF+ MP +++ ++N++I+G Q S
Sbjct: 175 SRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTS 234
Query: 66 DNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALV 125
D V A ++F M +D+++WNSMI GYV +G I++A +F MP +DVV+W +I
Sbjct: 235 DGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYA 294
Query: 126 NCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAK-----DVQAWN 180
+ A++ F +M RDV ++ M+ G V+ +EA ++F M + D
Sbjct: 295 KLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLV 354
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVN----SRRIDAAISYFKQMPET 236
+++ G + A D+ + ++ +L L++ I A+ F+ +
Sbjct: 355 IVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENK 414
Query: 237 CEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIA----SWTNVIVGYFEMGEVGSAIKVF 292
WN++I L +GL + A L + ++ ++ V+ G V + F
Sbjct: 415 SIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCF 474
Query: 293 ELMTTRDVTVWNVMIFGLGENDLGEEG-LKFFVQMKESGP-SPDNATFTSVLTICSDLPT 350
ELM + + +G + L G ++ + E P P++ + + LT CS
Sbjct: 475 ELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKE 534
Query: 351 LDLGRQIHAQAIKIA---RNQFTTVSNAMITMYARCG 384
+ G + I A + + +SN MYA G
Sbjct: 535 FETGELVAKHLILQAGYNPSSYVLLSN----MYASFG 567
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 59/138 (42%)
Query: 292 FELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTL 351
F D +WN +I + L M E+G S D + + VL CS L +
Sbjct: 78 FSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFV 137
Query: 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGL 411
G QIH K + N +I +Y +CG + + F +P D +S+NS+I G
Sbjct: 138 KGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGY 197
Query: 412 AYHGYAEKALELFERMRL 429
G A ELF+ M +
Sbjct: 198 VKCGLIVSARELFDLMPM 215
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 111/293 (37%), Gaps = 54/293 (18%)
Query: 337 TFTSVLTICSDLPTLDLGRQIHAQAIK--IARNQ---------FTTVSNAMITMYARCGN 385
+ +S + + T D QIH + IK I +N F + + +ARC
Sbjct: 11 SISSTIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVF 70
Query: 386 IQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSA 445
+ + FS + D WN++I ++ +AL L M D + VL A
Sbjct: 71 HEYHVCSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKA 130
Query: 446 CSYAGLVDQGRYYFDCMK-----NKYFLQ-----------------------PR--SAHY 475
CS G V G +K + FLQ P+ S Y
Sbjct: 131 CSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSY 190
Query: 476 TCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTV-WGALL-GACRIHNNIKVGEIAGERV 533
++D + GLI A L + + +E+ + W +++ G + + + +IA +
Sbjct: 191 NSMIDGYVKCGLIVSARELFDLMP---MEMKNLISWNSMISGYAQTSDGV---DIASKLF 244
Query: 534 MELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDG 586
++ + + + + Y+ GR EDAK +F M V +W + DG
Sbjct: 245 ADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDV-----VTWATMIDG 292
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 285 bits (730), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 188/665 (28%), Positives = 319/665 (47%), Gaps = 78/665 (11%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPER----DMFTYNT 57
R + A+ +FD+MP RD V+WN +I GY +G+ + A+ +++++ D FT ++
Sbjct: 153 RMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSS 212
Query: 58 VIAG------LMQSDNVQG-----------------------------AKEVFDGMEVRD 82
V+ + Q + G A+ VFD M+VRD
Sbjct: 213 VLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRD 272
Query: 83 VVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNL--VIGALVNCQRMDLAESYFKEM 140
V++N+MI GY+ +++E++R+F + D +L V L C +
Sbjct: 273 SVSYNTMICGYLKLEMVEESVRMF--LENLDQFKPDLLTVSSVLRACGHL---------- 320
Query: 141 GARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQ 200
RD++ + N +++ G ++E+ N++I Y G + A D+F
Sbjct: 321 --RDLSLAKYIYNYMLKAGFVLES------------TVRNILIDVYAKCGDMITARDVFN 366
Query: 201 KMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEK----TWNSIISVLIRNGLVKE 256
M +D SW +I+G + S + A+ FK M E+ T+ +ISV R +K
Sbjct: 367 SMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKF 426
Query: 257 AHSYLEKYPYSNIA---SWTNVIVG-YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGE 312
S I S +N ++ Y + GEVG ++K+F M T D WN +I
Sbjct: 427 GKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVR 486
Query: 313 NDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTV 372
GL+ QM++S PD ATF L +C+ L LG++IH ++ +
Sbjct: 487 FGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQI 546
Query: 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDF 432
NA+I MY++CG ++++ F + D+++W +I +G EKALE F M +
Sbjct: 547 GNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGI 606
Query: 433 KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAM 492
PD + F+ ++ ACS++GLVD+G F+ MK Y + P HY CVVDLL R I +A
Sbjct: 607 VPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAE 666
Query: 493 NLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552
I+A I+ ++W ++L ACR +++ E R++EL P++ G ++ + Y
Sbjct: 667 EF---IQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYA 723
Query: 553 SCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHT 612
+ + + I +K+ + K PG SWI++ HVF SGD S P+ + L +L++
Sbjct: 724 ALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYS 783
Query: 613 EIERE 617
+ +E
Sbjct: 784 LMAKE 788
Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 128/494 (25%), Positives = 219/494 (44%), Gaps = 73/494 (14%)
Query: 17 PQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPER----DMFTYNTVI---AGL------- 62
P ++ WN +IR + KNG A+ + ++ E D +T+ +VI AGL
Sbjct: 67 PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126
Query: 63 ----------MQSDNVQG---------------AKEVFDGMEVRDVVTWNSMISGYVCNG 97
+SD G A++VFD M VRD+V+WNS+ISGY +G
Sbjct: 127 LVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHG 186
Query: 98 LIDEALRVFHGMP----LKDVVSWNLVIGA----LVNCQRMDLAESYFKEMGARDVASWT 149
+EAL ++H + + D + + V+ A LV Q L K V
Sbjct: 187 YYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNN 246
Query: 150 IMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTS 209
+V ++ R +AR++FD+M +D ++N MI GYL V + +F L +
Sbjct: 247 GLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF-------LEN 299
Query: 210 WKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNI 269
Q L+ + A + + + L K ++Y+ K +
Sbjct: 300 LDQFKPDLLTVSSVLRACGHLRDL------------------SLAKYIYNYMLKAGFVLE 341
Query: 270 ASWTNVIVG-YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKE 328
++ N+++ Y + G++ +A VF M +D WN +I G ++ E +K F M
Sbjct: 342 STVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMI 401
Query: 329 SGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQS 388
D+ T+ ++++ + L L G+ +H+ IK +VSNA+I MYA+CG +
Sbjct: 402 MEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGD 461
Query: 389 ALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448
+L FSS+ D ++WN++I G L++ +MR ++ PD TF+ L C+
Sbjct: 462 SLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCAS 521
Query: 449 AGLVDQGRYYFDCM 462
G+ C+
Sbjct: 522 LAAKRLGKEIHCCL 535
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Query: 274 NVIVGYFEMGEVGSAIKVFELMT-TRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPS 332
+I Y E S++ VF ++ ++V +WN +I +N L E L+F+ +++ES S
Sbjct: 44 KLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVS 103
Query: 333 PDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLE 392
PD TF SV+ C+ L ++G ++ Q + + V NA++ MY+R G + A
Sbjct: 104 PDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQV 163
Query: 393 FSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLV 452
F +P+ D++SWNS+I G + HGY E+ALE++ ++ + PD T VL A +V
Sbjct: 164 FDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVV 223
Query: 453 DQGR 456
QG+
Sbjct: 224 KQGQ 227
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 146/327 (44%), Gaps = 42/327 (12%)
Query: 212 QLINGLVNSRRIDAAISYFKQM-PETCEKTWNSIISVLIRNGLVKEAHSYL--------- 261
+LI+ + R +++S F+++ P WNSII +NGL EA +
Sbjct: 44 KLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVS 103
Query: 262 -EKYPYSNIASW-----------------------TNVIVG------YFEMGEVGSAIKV 291
+KY + ++ +++ VG Y MG + A +V
Sbjct: 104 PDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQV 163
Query: 292 FELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTL 351
F+ M RD+ WN +I G + EE L+ + ++K S PD+ T +SVL +L +
Sbjct: 164 FDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVV 223
Query: 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGL 411
G+ +H A+K N V+N ++ MY + A F + + D +S+N++ICG
Sbjct: 224 KQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGY 283
Query: 412 AYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR 471
E+++ +F L FKPD +T VL AC + + +Y ++ M F+
Sbjct: 284 LKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLES 342
Query: 472 SAHYTCVVDLLGRFGLIDEAMNLLNEI 498
+ ++D+ + G + A ++ N +
Sbjct: 343 TVR-NILIDVYAKCGDMITARDVFNSM 368
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 188/644 (29%), Positives = 321/644 (49%), Gaps = 38/644 (5%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPER--------DMFTYNT 57
+ +A LFD MP+R+ V+WN MIR + NGF + + L +M E D+ T T
Sbjct: 238 VTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVT 297
Query: 58 VIAGLMQSDNVQGAKEVFDGMEV-----RDVVTWNSMISGYVCNGLIDEALRVFHGMPLK 112
V+ + + K V G V +++V N+++ Y G I A +F K
Sbjct: 298 VLPVCAREREIGLGKGV-HGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNK 356
Query: 113 DVVSWNLVIGALVNCQRMDLAESYFKEM--GARDVASWTIMVNGLV----REGRIVEARK 166
+VVSWN ++G ++M G DV + + + V E + ++
Sbjct: 357 NVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKE 416
Query: 167 L----FDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRR 222
L + + N +A Y G + A+ +F + + + SW LI G S
Sbjct: 417 LHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSND 476
Query: 223 IDAAISYFKQM------PET---CEKTWNSIISVLIRNGLVKEAHSY-LEKYPYSNIASW 272
++ QM P++ C + S S L L KE H + + + ++ +
Sbjct: 477 PRLSLDAHLQMKISGLLPDSFTVC--SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVY 534
Query: 273 TNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPS 332
+V+ Y GE+ + +F+ M + + WN +I G +N + L F QM G
Sbjct: 535 LSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQ 594
Query: 333 PDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLE 392
+ V CS LP+L LGR+ HA A+K ++ ++I MYA+ G+I +
Sbjct: 595 LCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKV 654
Query: 393 FSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLV 452
F+ + SWN++I G HG A++A++LFE M+ T PDD+TF+GVL+AC+++GL+
Sbjct: 655 FNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLI 714
Query: 453 DQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGA 512
+G Y D MK+ + L+P HY CV+D+LGR G +D+A+ ++ E ++ +V +W +
Sbjct: 715 HEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVG--IWKS 772
Query: 513 LLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572
LL +CRIH N+++GE ++ ELEP Y++L+ +Y G+ ED +++ +M E +
Sbjct: 773 LLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSL 832
Query: 573 KKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIER 616
+K+ GCSWI++N F+ G+ F ++ L ++L +I +
Sbjct: 833 RKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISK 876
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 132/554 (23%), Positives = 254/554 (45%), Gaps = 56/554 (10%)
Query: 8 EAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPER-----DMFTYNTVIAGL 62
+++ +FD + ++ WN +I Y +N D + F +M D FTY VI
Sbjct: 138 DSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKAC 197
Query: 63 MQSDNVQGAKEVFDGMEVR-----DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSW 117
+V G G+ V+ DV N+++S Y +G + +AL++F MP +++VSW
Sbjct: 198 AGMSDV-GIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSW 256
Query: 118 NLVIGALVNCQRMDLAESYFKEMGAR-----------DVASWTIMVNGLVRE-----GRI 161
N +I + +E F +G DVA+ ++ RE G+
Sbjct: 257 NSMIRVFSD---NGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKG 313
Query: 162 VEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSR 221
V + ++ K++ N ++ Y GC+ A+ +F+ +++++ SW ++ G
Sbjct: 314 VHGWAVKLRLD-KELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEG 372
Query: 222 RIDAAISYFKQMPETCEKTWNSIISVLIRNGL-----------VKEAHSY--LEKYPYSN 268
+QM E +++L N + +KE H Y +++ Y+
Sbjct: 373 DTHGTFDVLRQMLAGGEDVKADEVTIL--NAVPVCFHESFLPSLKELHCYSLKQEFVYNE 430
Query: 269 IASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKE 328
+ + + Y + G + A +VF + ++ V WN +I G +++ L +QMK
Sbjct: 431 LVA-NAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKI 489
Query: 329 SGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK--IARNQFTTVSNAMITMYARCGNI 386
SG PD+ T S+L+ CS L +L LG+++H I+ + R+ F +S ++++Y CG +
Sbjct: 490 SGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLS--VLSLYIHCGEL 547
Query: 387 QSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446
+ F ++ ++SWN++I G +G+ ++AL +F +M L + I+ + V AC
Sbjct: 548 CTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGAC 607
Query: 447 SYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS 506
S + GR K+ L+ + ++D+ + G I ++ + N ++ E S
Sbjct: 608 SLLPSLRLGREA-HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK----EKS 662
Query: 507 PTVWGALLGACRIH 520
W A++ IH
Sbjct: 663 TASWNAMIMGYGIH 676
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 128/564 (22%), Positives = 230/564 (40%), Gaps = 90/564 (15%)
Query: 71 AKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMP-----LKDVVSWNLVIGALV 125
++ VFD + +++ WN++IS Y N L DE L F M L D ++ VI A
Sbjct: 139 SRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACA 198
Query: 126 NCQRMDLAESY----FKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNL 181
+ + + K DV +V+ G + +A +LFD MP +++ +WN
Sbjct: 199 GMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNS 258
Query: 182 MIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTW 241
MI + DNG +E+ F L+ G + D A MP+ T
Sbjct: 259 MIRVFSDNG---FSEESF-------------LLLGEMMEENGDGAF-----MPDVA--TL 295
Query: 242 NSIISVLIRN---GLVKEAHSYLEKYPYSNIASWTNVIVG-YFEMGEVGSAIKVFELMTT 297
+++ V R GL K H + K N ++ Y + G + +A +F++
Sbjct: 296 VTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNN 355
Query: 298 RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGP--SPDNATFTSVLTIC---SDLPTLD 352
++V WN M+ G QM G D T + + +C S LP+L
Sbjct: 356 KNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSL- 414
Query: 353 LGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLA 412
+++H ++K V+NA + YA+CG++ A F + + SWN++I G A
Sbjct: 415 --KELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHA 472
Query: 413 YHGYAEKALELFERMRLTDFKPDDITFVGVLSACS------------------------- 447
+L+ +M+++ PD T +LSACS
Sbjct: 473 QSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLF 532
Query: 448 ----------YAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNE 497
+ G + + FD M++K + + V+ + G D A+ + +
Sbjct: 533 VYLSVLSLYIHCGELCTVQALFDAMEDKSLVS-----WNTVITGYLQNGFPDRALGVFRQ 587
Query: 498 IRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME-LEPNNSGVYLILTEMYLSCGR 556
+ GI++ + GAC + ++++G A ++ L +++ + L +MY G
Sbjct: 588 MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGS 647
Query: 557 REDAKRIFAQMKENGVKKEPGCSW 580
+ ++F NG+K++ SW
Sbjct: 648 ITQSSKVF-----NGLKEKSTASW 666
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 91/180 (50%), Gaps = 5/180 (2%)
Query: 273 TNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQM-KESGP 331
T +I Y G + VF+ + ++++ WN +I N+L +E L+ F++M +
Sbjct: 124 TRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDL 183
Query: 332 SPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALL 391
PD+ T+ V+ C+ + + +G +H +K + V NA+++ Y G + AL
Sbjct: 184 LPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQ 243
Query: 392 EFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTD----FKPDDITFVGVLSACS 447
F +P +++SWNS+I + +G++E++ L M + F PD T V VL C+
Sbjct: 244 LFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA 303
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 351 LDLGRQIHAQAIKIARNQFTTV-SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIIC 409
+++GR+IH R + V +ITMYA CG+ + F ++ ++ WN++I
Sbjct: 100 IEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVIS 159
Query: 410 GLAYHGYAEKALELF-ERMRLTDFKPDDITFVGVLSACSYAGLVDQG 455
+ + ++ LE F E + TD PD T+ V+ AC AG+ D G
Sbjct: 160 SYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKAC--AGMSDVG 204
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 18/186 (9%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPER----DMFTYNT 57
+N I ++ +F+ + ++ T +WN MI GY +G A+ LF +M D T+
Sbjct: 644 KNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLG 703
Query: 58 VIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVC-------NGLIDEALRVF--HG 108
V+ S + D M+ + N + Y C G +D+ALRV
Sbjct: 704 VLTACNHSGLIHEGLRYLDQMKSSFGLKPN--LKHYACVIDMLGRAGQLDKALRVVAEEM 761
Query: 109 MPLKDVVSWNLVIGALVNCQRMDLAE---SYFKEMGARDVASWTIMVNGLVREGRIVEAR 165
DV W ++ + Q +++ E + E+ ++ ++ N G+ + R
Sbjct: 762 SEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVR 821
Query: 166 KLFDKM 171
K+ +M
Sbjct: 822 KVRQRM 827
>sp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containing protein At1g17630
OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1
Length = 731
Score = 283 bits (724), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 183/587 (31%), Positives = 300/587 (51%), Gaps = 84/587 (14%)
Query: 25 NVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVR--- 81
N ++ Y K G + +A LF +MP R+ ++N +I G Q + + A ++F+ M+
Sbjct: 197 NELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFK 256
Query: 82 -DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEM 140
D VTW S++S + G ++ L+ FH M + G V+ + + + S E+
Sbjct: 257 PDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMS---------GNAVSGEALAVFFSVCAEL 307
Query: 141 GARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQ 200
A +A V+G V +G E +P++ N +I Y G V AE LF+
Sbjct: 308 EALSIAE---KVHGYVIKGGFEEY------LPSR-----NALIHVYGKQGKVKDAEHLFR 353
Query: 201 KMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSY 260
++ ++ + SW LI V++ ++D A+S F ++ E N + +V
Sbjct: 354 QIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEM-----NHVCNV------------- 395
Query: 261 LEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGL 320
+N+ +WT+VI G G G++ L
Sbjct: 396 -----KANVVTWTSVIKGCNVQGR-------------------------------GDDSL 419
Query: 321 KFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMY 380
++F QM+ S ++ T +L+IC++LP L+LGR+IH I+ + ++ V NA++ MY
Sbjct: 420 EYFRQMQFSKVLANSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMY 479
Query: 381 ARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV 440
A+CG + L F ++ D+ISWNSII G HG+AEKAL +F+RM + F PD I V
Sbjct: 480 AKCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALV 539
Query: 441 GVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRA 500
VLSACS+AGLV++GR F M ++ L+P+ HY C+VDLLGR G + EA ++ +
Sbjct: 540 AVLSACSHAGLVEKGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNM-- 597
Query: 501 DGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDA 560
+E V GALL +CR+H N+ + E ++ LEP +G Y++L+ +Y + GR E++
Sbjct: 598 -PMEPKVCVLGALLNSCRMHKNVDIAEGIASQLSVLEPERTGSYMLLSNIYSAGGRWEES 656
Query: 561 KRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLL 607
+ A K+ +KK G SWI++ + F SG +F + +L
Sbjct: 657 ANVRALAKKKDLKKVSGSSWIEVKKKKYKFSSGSIVQSEFETIYPVL 703
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 177/381 (46%), Gaps = 53/381 (13%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
+ R+ +A NLF +MP R+ ++WNVMI+G+ + ++A+ +F M +R+ F
Sbjct: 205 KAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWM-QREEFK------- 256
Query: 62 LMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLK-DVVSWNLV 120
D VTW S++S + G ++ L+ FH M + + VS +
Sbjct: 257 -------------------PDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEAL 297
Query: 121 IGALVNCQRMD---LAES---YFKEMGARD-VASWTIMVNGLVREGRIVEARKLFDKMPA 173
C ++ +AE Y + G + + S +++ ++G++ +A LF ++
Sbjct: 298 AVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRN 357
Query: 174 KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHD--------RDLTSWKQLINGLVNSRRIDA 225
K +++WN +I ++D G + A LF ++ + ++ +W +I G R D
Sbjct: 358 KGIESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDD 417
Query: 226 AISYFKQMPETCEKTWNSIISVLIRN--------GLVKEAHSYLEKYPYS-NIASWTNVI 276
++ YF+QM + + NS+ I + L +E H ++ + S NI ++
Sbjct: 418 SLEYFRQM-QFSKVLANSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALV 476
Query: 277 VGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNA 336
Y + G + VFE + +D+ WN +I G G + E+ L F +M SG PD
Sbjct: 477 NMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGI 536
Query: 337 TFTSVLTICSDLPTLDLGRQI 357
+VL+ CS ++ GR+I
Sbjct: 537 ALVAVLSACSHAGLVEKGREI 557
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 166/375 (44%), Gaps = 24/375 (6%)
Query: 151 MVNGLVREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDL 207
+++ R G +++AR +F+ + D++ WN ++ + +G A +L++ M R L
Sbjct: 95 LISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQRGL 154
Query: 208 TSWKQLINGLVNS----RRIDAAISYFKQMPETCEK----TWNSIISVLIRNGLVKEAHS 259
T ++ ++ + R ++ Q+ + K N ++++ + G + +A++
Sbjct: 155 TGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAYN 214
Query: 260 YLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTR----DVTVWNVMIFGLGENDL 315
+ P N SW +I G+ + + SA+K+FE M D W ++ +
Sbjct: 215 LFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCGK 274
Query: 316 GEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNA 375
E+ LK+F M+ SG + ++C++L L + ++H IK ++ NA
Sbjct: 275 FEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRNA 334
Query: 376 MITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERM----RLTD 431
+I +Y + G ++ A F + I SWNS+I G ++AL LF + + +
Sbjct: 335 LIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMNHVCN 394
Query: 432 FKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEA 491
K + +T+ V+ C+ G D YF M+ L S C++ + A
Sbjct: 395 VKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVL-ANSVTICCILSICAEL----PA 449
Query: 492 MNLLNEIRADGIEVS 506
+NL EI I S
Sbjct: 450 LNLGREIHGHVIRTS 464
Score = 99.4 bits (246), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 158/348 (45%), Gaps = 28/348 (8%)
Query: 273 TNVIVGYFEMGEVGSAIKVFE---LMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKES 329
N+I Y +G + A VFE L+ D+ +WN ++ + L E L+ + M++
Sbjct: 93 ANLISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQR 152
Query: 330 GPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA 389
G + D +L C L L R H Q I+I + V N ++T+Y + G + A
Sbjct: 153 GLTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDA 212
Query: 390 LLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYA 449
F +P+ + +SWN +I G + E A+++FE M+ +FKPD++T+ VLS S
Sbjct: 213 YNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHSQC 272
Query: 450 GLVDQGRYYFDCMK---NKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRA----DG 502
G + YF M+ N + + ++ +L EA+++ ++ G
Sbjct: 273 GKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAEL--------EALSIAEKVHGYVIKGG 324
Query: 503 IEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV--YLILTEMYLSCGRREDA 560
E AL IH K G++ + + N G+ + L ++ G+ ++A
Sbjct: 325 FEEYLPSRNAL-----IHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEA 379
Query: 561 KRIFAQMKE-NGV--KKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRY 605
+F++++E N V K +W + G +V GD S F ++++
Sbjct: 380 LSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQF 427
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 123/281 (43%), Gaps = 40/281 (14%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
+ ++++A++LF ++ + +WN +I + G LD A+ LF+++ E +
Sbjct: 341 KQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMNHVC------- 393
Query: 62 LMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVI 121
NV+ +VVTW S+I G G D++L F M V++ ++ I
Sbjct: 394 -----NVKA-----------NVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTI 437
Query: 122 GALVN-CQRM-------DLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPA 173
+++ C + ++ + + ++ +VN + G + E +F+ +
Sbjct: 438 CCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRD 497
Query: 174 KDVQAWNLMIAGYLDNGCVGVAEDLFQKM----HDRDLTSWKQLINGLVNSRRIDAAISY 229
KD+ +WN +I GY +G A +F +M D + +++ ++ ++
Sbjct: 498 KDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREI 557
Query: 230 FKQMP-----ETCEKTWNSIISVLIRNGLVKEAHSYLEKYP 265
F M E ++ + I+ +L R G +KEA ++ P
Sbjct: 558 FYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMP 598
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 282 bits (722), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 194/639 (30%), Positives = 317/639 (49%), Gaps = 91/639 (14%)
Query: 4 ARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQM--------PE------ 49
I A+ LF++MPQ +++N++IR Y + G +A+ +F +M P+
Sbjct: 63 GHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPF 122
Query: 50 ---------------------------RDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRD 82
RD + N ++A M V+ A++VFD M+ RD
Sbjct: 123 VAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRD 182
Query: 83 VVTWNSMISGYVCNGLIDEALRVFHGMPLKDV-VSWNLVIGALVNCQRM-DLAESYFKEM 140
V++WN+MISGY NG +++AL +F M + V + ++ L C + DL EM
Sbjct: 183 VISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDL------EM 236
Query: 141 GARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQ 200
G R+V ++VE ++L DK+ K N ++ YL G + A +F
Sbjct: 237 G-RNVH-------------KLVEEKRLGDKIEVK-----NALVNMYLKCGRMDEARFVFD 277
Query: 201 KMHDRDLTSWKQLINGLVNSRRIDAAISYFKQM------PETCEKTWNSIISVL-----I 249
+M RD+ +W +ING ++ A+ + M P T S++SV +
Sbjct: 278 RMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAV--TIASLVSVCGDALKV 335
Query: 250 RNGLVKEAHSY-LEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIF 308
+G K H + + + YS+I T++I Y + V +VF + W+ +I
Sbjct: 336 NDG--KCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIA 393
Query: 309 GLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQ 368
G +N+L + L F +M+ P+ AT S+L + L L IH K
Sbjct: 394 GCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMS 453
Query: 369 FTTVSNAMITMYARCGNIQSALLEFSSV----PIHDIISWNSIICGLAYHGYAEKALELF 424
+ ++ +Y++CG ++SA F+ + D++ W ++I G HG AL++F
Sbjct: 454 SLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVF 513
Query: 425 ERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR 484
M + P++ITF L+ACS++GLV++G F M Y RS HYTC+VDLLGR
Sbjct: 514 MEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGR 573
Query: 485 FGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVY 544
G +DEA NL+ I E + TVWGALL AC H N+++GE+A ++ ELEP N+G Y
Sbjct: 574 AGRLDEAYNLITTI---PFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNY 630
Query: 545 LILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQI 583
++L +Y + GR +D +++ + M+ G++K+PG S I+I
Sbjct: 631 VLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTIEI 669
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/446 (24%), Positives = 191/446 (42%), Gaps = 52/446 (11%)
Query: 127 CQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQ--------- 177
C + A F+EM + S+ I++ VREG +A +F +M ++ V+
Sbjct: 62 CGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYP 121
Query: 178 ------------------------AW--------NLMIAGYLDNGCVGVAEDLFQKMHDR 205
+W N ++A Y++ G V +A D+F M +R
Sbjct: 122 FVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNR 181
Query: 206 DLTSWKQLINGLVNSRRIDAAISYFKQM-PETCEKTWNSIISVLIRNGLVKE------AH 258
D+ SW +I+G + ++ A+ F M E+ + +I+S+L G +K+ H
Sbjct: 182 DVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVH 241
Query: 259 SYLEKYPYSNIASWTNVIVG-YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGE 317
+E+ + N +V Y + G + A VF+ M RDV W MI G E+ E
Sbjct: 242 KLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVE 301
Query: 318 EGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMI 377
L+ M+ G P+ T S++++C D ++ G+ +H A++ + ++I
Sbjct: 302 NALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLI 361
Query: 378 TMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI 437
+MYA+C + FS + W++II G + AL LF+RMR D +P+
Sbjct: 362 SMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIA 421
Query: 438 TFVGVLSACSYAGLVD-QGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLN 496
T +L A YA L D + C K T +V + + G ++ A + N
Sbjct: 422 TLNSLLPA--YAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFN 479
Query: 497 EIRADGIEVSPTVWGALLGACRIHNN 522
I+ +WGAL+ +H +
Sbjct: 480 GIQEKHKSKDVVLWGALISGYGMHGD 505
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 203/472 (43%), Gaps = 86/472 (18%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDM-FTYNTVI 59
M +++ A+++FD M RD ++WN MI GY++NG++++A+ +F+ M + + T++
Sbjct: 163 MNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIV 222
Query: 60 AGL--------------------------------------MQSDNVQGAKEVFDGMEVR 81
+ L ++ + A+ VFD ME R
Sbjct: 223 SMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERR 282
Query: 82 DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAES------ 135
DV+TW MI+GY +G ++ AL + M + V + I +LV+ L +
Sbjct: 283 DVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLH 342
Query: 136 --YFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVG 193
++ D+ T +++ + R+ ++F W+ +IAG + N V
Sbjct: 343 GWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVS 402
Query: 194 VAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGL 253
A LF++M D+ +N L+ + AA++ +Q
Sbjct: 403 DALGLFKRMRREDVEPNIATLNSLLPAY---AALADLRQ--------------------- 438
Query: 254 VKEAHSYLEKYPY-SNIASWTNVIVGYFEMGEVGSAIKVF----ELMTTRDVTVWNVMIF 308
H YL K + S++ + T ++ Y + G + SA K+F E ++DV +W +I
Sbjct: 439 AMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALIS 498
Query: 309 GLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLG----RQIHAQAIKI 364
G G + G L+ F++M SG +P+ TFTS L CS ++ G R + +
Sbjct: 499 GYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTL 558
Query: 365 AR-NQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIIS-WNSIICGLAYH 414
AR N +T + + + R G + A +++P + W +++ H
Sbjct: 559 ARSNHYTCI----VDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTH 606
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 137/329 (41%), Gaps = 47/329 (14%)
Query: 277 VGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPS--PD 334
V Y G + A K+FE M + +N++I L + + F++M G PD
Sbjct: 57 VTYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPD 116
Query: 335 NATFTSVLTICSDLPTLDLGRQIHAQAIK--IARNQFTTVSNAMITMYARCGNIQSALLE 392
T+ V +L ++ LG +H + ++ R+++ V NA++ MY G ++ A
Sbjct: 117 GYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKY--VQNALLAMYMNFGKVEMARDV 174
Query: 393 FSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY---- 448
F + D+ISWN++I G +GY AL +F+ M D T V +L C +
Sbjct: 175 FDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDL 234
Query: 449 -------------------------------AGLVDQGRYYFDCMKNKYFLQPRSAHYTC 477
G +D+ R+ FD M+ + + +TC
Sbjct: 235 EMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVIT-----WTC 289
Query: 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGE-IAGERVMEL 536
+++ G ++ A+ L ++ +G+ + +L+ C + G+ + G V +
Sbjct: 290 MINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQ 349
Query: 537 EPNNSGVYLILTEMYLSCGRREDAKRIFA 565
++ + L MY C R + R+F+
Sbjct: 350 VYSDIIIETSLISMYAKCKRVDLCFRVFS 378
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 109/278 (39%), Gaps = 54/278 (19%)
Query: 338 FTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP 397
+ S+L + ++ + +H I R +S +T YA CG+I A F +P
Sbjct: 18 YQSLLNHFAATQSISKTKALHCHVITGGRVSGHILSTLSVT-YALCGHITYARKLFEEMP 76
Query: 398 IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFK--PDDITFVGVLSACS-----YAG 450
++S+N +I G A+ +F RM K PD T+ V A G
Sbjct: 77 QSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLG 136
Query: 451 LVDQGRYY------------------------------FDCMKNKYFLQPRSAHYTCVVD 480
LV GR FD MKN+ + + ++
Sbjct: 137 LVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVIS-----WNTMIS 191
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME----- 535
R G +++A+ + + + + +++ ++L C ++++G + V E
Sbjct: 192 GYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGD 251
Query: 536 -LEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572
+E N+ L MYL CGR ++A+ +F +M+ V
Sbjct: 252 KIEVKNA-----LVNMYLKCGRMDEARFVFDRMERRDV 284
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 282 bits (722), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 193/663 (29%), Positives = 327/663 (49%), Gaps = 75/663 (11%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPER----DMFTYN 56
+++ I A+ +FD +P++ TVTW MI G K G ++ LF Q+ E D + +
Sbjct: 194 LKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILS 253
Query: 57 TVIAGLMQSDNVQGAKEVFD-----GMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPL 111
TV++ ++G K++ G+E+ D N +I YV G + A ++F+GMP
Sbjct: 254 TVLSACSILPFLEGGKQIHAHILRYGLEM-DASLMNVLIDSYVKCGRVIAAHKLFNGMPN 312
Query: 112 KDVVSWNLVIGA-------------------------LVNCQRMDLAESYFKEMG-ARDV 145
K+++SW ++ + C + + + +G V
Sbjct: 313 KNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQV 372
Query: 146 ASWTI---------MVNGLV----REGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCV 192
++TI + N L+ + + +ARK+FD A DV +N MI GY G
Sbjct: 373 HAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQ 432
Query: 193 GVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNG 252
+ D + + V+ R A+++ G
Sbjct: 433 WELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSL---------------------G 471
Query: 253 LVKEAHSYLEKYPYS-NIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLG 311
L K+ H + KY + +I + + +I Y + + VF+ M +D+ +WN M G
Sbjct: 472 LSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYV 531
Query: 312 ENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT 371
+ EE L F++++ S PD TF +++T +L ++ LG++ H Q +K
Sbjct: 532 QQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPY 591
Query: 372 VSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTD 431
++NA++ MYA+CG+ + A F S D++ WNS+I A HG +KAL++ E+M
Sbjct: 592 ITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEG 651
Query: 432 FKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEA 491
+P+ ITFVGVLSACS+AGLV+ G F+ M ++ ++P + HY C+V LLGR G +++A
Sbjct: 652 IEPNYITFVGVLSACSHAGLVEDGLKQFELML-RFGIEPETEHYVCMVSLLGRAGRLNKA 710
Query: 492 MNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551
L+ ++ + + VW +LL C N+++ E A E + +P +SG + +L+ +Y
Sbjct: 711 RELIEKMPT---KPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIY 767
Query: 552 LSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLH 611
S G +AK++ +MK GV KEPG SWI IN H+FLS D SH K +++ +L+ L
Sbjct: 768 ASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLL 827
Query: 612 TEI 614
+I
Sbjct: 828 VQI 830
Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 149/631 (23%), Positives = 264/631 (41%), Gaps = 102/631 (16%)
Query: 9 AQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQM-------P------------- 48
A+ +F+KMP+R+ V+W+ M+ +G + ++ +F + P
Sbjct: 98 ARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACS 157
Query: 49 ----------------------ERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTW 86
+RD++ +I ++ N+ A+ VFD + + VTW
Sbjct: 158 GLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTW 217
Query: 87 NSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVN-CQRMDLAES---------- 135
+MISG V G +L++F+ + +VV ++ +++ C + E
Sbjct: 218 TTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILR 277
Query: 136 YFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVA 195
Y EM D + ++++ V+ GR++ A KLF+ MP K++ +W +++GY N A
Sbjct: 278 YGLEM---DASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEA 334
Query: 196 EDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE--TCEKTWNSIISVLIRNGL 253
+LF M S F P+ C S S L G
Sbjct: 335 MELFTSM-------------------------SKFGLKPDMYACSSILTSCAS-LHALGF 368
Query: 254 VKEAHSYLEKYPYSNIASWTNVIVG-YFEMGEVGSAIKVFELMTTRDVTVWNVMIFG--- 309
+ H+Y K N + TN ++ Y + + A KVF++ DV ++N MI G
Sbjct: 369 GTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSR 428
Query: 310 LGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQF 369
LG E L F M+ P TF S+L + L +L L +QIH K N
Sbjct: 429 LGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLD 488
Query: 370 TTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRL 429
+A+I +Y+ C ++ + L F + + D++ WNS+ G E+AL LF ++L
Sbjct: 489 IFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQL 548
Query: 430 TDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLID 489
+ +PD+ TF +++A V G+ F C K L+ ++D+ + G +
Sbjct: 549 SRERPDEFTFANMVTAAGNLASVQLGQ-EFHCQLLKRGLECNPYITNALLDMYAKCGSPE 607
Query: 490 EAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME--LEPNNSGVYLIL 547
+A + + + W +++ + H K E++M +EPN Y+
Sbjct: 608 DAHKAFDSAASRDV----VCWNSVISSYANHGEGKKALQMLEKMMSEGIEPN----YITF 659
Query: 548 TEMYLSC---GRREDAKRIFAQMKENGVKKE 575
+ +C G ED + F M G++ E
Sbjct: 660 VGVLSACSHAGLVEDGLKQFELMLRFGIEPE 690
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 142/565 (25%), Positives = 252/565 (44%), Gaps = 76/565 (13%)
Query: 49 ERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHG 108
E D + N +I ++ + A++VF+ M R++V+W++M+S +G+ +E+L VF
Sbjct: 76 ELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLE 135
Query: 109 M--PLKDVVSWNLVIGALVNCQRMD--------LAESYFKEMG-ARDVASWTIMVNGLVR 157
KD + ++ + C +D +S+ + G RDV T++++ ++
Sbjct: 136 FWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLK 195
Query: 158 EGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGL 217
+G I AR +FD +P K W MI+G + G V+ LF ++ + ++ +G
Sbjct: 196 DGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVP-----DGY 250
Query: 218 VNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIV 277
+ S + A SI+ L G K+ H+++ +Y AS NV++
Sbjct: 251 ILSTVLSAC----------------SILPFL-EGG--KQIHAHILRYGLEMDASLMNVLI 291
Query: 278 -GYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNA 336
Y + G V +A K+F M +++ W ++ G +N L +E ++ F M + G PD
Sbjct: 292 DSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMY 351
Query: 337 TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSV 396
+S+LT C+ L L G Q+HA IK + V+N++I MYA+C + A F
Sbjct: 352 ACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIF 411
Query: 397 PIHDIISWNSIICGLAYHGYA---EKALELFERMRLTDFKPDDITFVGVLSAC---SYAG 450
D++ +N++I G + G +AL +F MR +P +TFV +L A + G
Sbjct: 412 AAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLG 471
Query: 451 LVDQ----------------GRYYFDCMKNKYFLQPRSAHY--TCVVDLLGRFGLI---- 488
L Q G D N Y L+ + V DL+ +
Sbjct: 472 LSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYV 531
Query: 489 -----DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAG----ERVMELEPN 539
+EA+NL E++ + ++ A ++++G+ +R +E P
Sbjct: 532 QQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPY 591
Query: 540 NSGVYLILTEMYLSCGRREDAKRIF 564
+ L +MY CG EDA + F
Sbjct: 592 ITNA---LLDMYAKCGSPEDAHKAF 613
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 152/324 (46%), Gaps = 25/324 (7%)
Query: 149 TIMVNGLVREGRIVEARKLFDKMPAKDVQ-----AWNLMIAGYLDN---------GCVGV 194
TI + G R+++ R D + ++V W L + YL N G +
Sbjct: 38 TIGIRGRREFARLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVY 97
Query: 195 AEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNS-IISVLIR--N 251
A +F+KM +R+L SW +++ + + ++ F + T + + N I+S I+ +
Sbjct: 98 ARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACS 157
Query: 252 GL-------VKEAHSYLEKYPYS-NIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVW 303
GL V + S+L K + ++ T +I Y + G + A VF+ + + W
Sbjct: 158 GLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTW 217
Query: 304 NVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK 363
MI G + L+ F Q+ E PD ++VL+ CS LP L+ G+QIHA ++
Sbjct: 218 TTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILR 277
Query: 364 IARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALEL 423
++ N +I Y +CG + +A F+ +P +IISW +++ G + ++A+EL
Sbjct: 278 YGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMEL 337
Query: 424 FERMRLTDFKPDDITFVGVLSACS 447
F M KPD +L++C+
Sbjct: 338 FTSMSKFGLKPDMYACSSILTSCA 361
>sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970
OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2
Length = 701
Score = 282 bits (721), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 193/659 (29%), Positives = 312/659 (47%), Gaps = 69/659 (10%)
Query: 20 DTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGME 79
D N ++ Y K GFL A LF++MP+RD ++NT+I+G ++ A +F M+
Sbjct: 34 DIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMK 93
Query: 80 VR----DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGA-----LVNCQRM 130
D +++ ++ G D +V HG+ +K N+ +G+ C+R+
Sbjct: 94 RSGSDVDGYSFSRLLKGIASVKRFDLGEQV-HGLVIKGGYECNVYVGSSLVDMYAKCERV 152
Query: 131 DLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAK---------------- 174
+ A FKE+ + SW ++ G V+ I A L M K
Sbjct: 153 EDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTL 212
Query: 175 ------------------------DVQAWNLMIAGYLDNGCVGVAEDLFQKMH-DRDLTS 209
++ N MI+ Y D G V A+ +F + +DL S
Sbjct: 213 LDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLIS 272
Query: 210 WKQLINGLVNSRRIDAAISYFKQMP----ETCEKTWNSIISVLI---RNGLVKEAHSYLE 262
W +I G ++A F QM ET T+ ++S K H +
Sbjct: 273 WNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGMVI 332
Query: 263 KYPYSNIASWTNVIVGY---FEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEG 319
K + S TN ++ F G + A+ +FE + ++D+ WN +I G + L E+
Sbjct: 333 KKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDA 392
Query: 320 LKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK--IARNQFTTVSNAMI 377
+KFF ++ S D+ F+++L CSDL TL LG+QIHA A K N+F V +++I
Sbjct: 393 VKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEF--VISSLI 450
Query: 378 TMYARCGNIQSALLEFSSVPI-HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD 436
MY++CG I+SA F + H ++WN++I G A HG + +L+LF +M + K D
Sbjct: 451 VMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDH 510
Query: 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLN 496
+TF +L+ACS+ GL+ +G + M+ Y +QPR HY VDLLGR GL+++A L+
Sbjct: 511 VTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIE 570
Query: 497 EIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGR 556
+ + P V LG CR I++ ++E+EP + Y+ L+ MY +
Sbjct: 571 SMP---LNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKK 627
Query: 557 REDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIE 615
E+ + MKE GVKK PG SWI+I + F + D S+P + ++ L E++
Sbjct: 628 WEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIYMMIKDLTQEMQ 686
Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 117/470 (24%), Positives = 203/470 (43%), Gaps = 87/470 (18%)
Query: 128 QRMDLAESYFKEMGA-RDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGY 186
Q++ L Y + G+ D+ +++ ++ G + A LFD+MP +D +WN MI+GY
Sbjct: 17 QKLSLTHCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGY 76
Query: 187 LDNGCVGVAEDLFQKMH----DRDLTSWKQLINGLVNSRRIDA----------------- 225
G + A LF M D D S+ +L+ G+ + +R D
Sbjct: 77 TSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNV 136
Query: 226 ------------------AISYFKQMPETCEKTWNSIIS--VLIRN-------------- 251
A FK++ E +WN++I+ V +R+
Sbjct: 137 YVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMK 196
Query: 252 -----------------------GLVKEAHSYLEKYPYSNIASWTNVIV-GYFEMGEVGS 287
L+K+ H+ + K + + N ++ Y + G V
Sbjct: 197 AAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSD 256
Query: 288 AIKVFE-LMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICS 346
A +VF+ L ++D+ WN MI G +++L E + F+QM+ D T+T +L+ CS
Sbjct: 257 AKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACS 316
Query: 347 DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYAR--CGNIQSALLEFSSVPIHDIISW 404
G+ +H IK Q T+ +NA+I+MY + G ++ AL F S+ D+ISW
Sbjct: 317 GEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISW 376
Query: 405 NSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464
NSII G A G +E A++ F +R ++ K DD F +L +CS + G+
Sbjct: 377 NSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATK 436
Query: 465 KYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL 514
F+ + +V + + G+I+ A +I + + S W A++
Sbjct: 437 SGFVSNEFVISSLIV-MYSKCGIIESARKCFQQISS---KHSTVAWNAMI 482
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 98/217 (45%), Gaps = 22/217 (10%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQS 65
+++A +LF+ + +D ++WN +I G+ + G ++A+ F+ + ++ + + L++S
Sbjct: 358 MEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRS 417
Query: 66 DNVQGAKEVFDGMEVRDVVT----------WNSMISGYVCNGLIDEALRVFHGMPLK-DV 114
+ ++ G ++ + T +S+I Y G+I+ A + F + K
Sbjct: 418 CSDLATLQL--GQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHST 475
Query: 115 VSWNLVIGALVNCQRMDLAESYFKEMGARDV----ASWTIMVNGLVREGRIVEARKLFDK 170
V+WN +I ++ F +M ++V ++T ++ G I E +L +
Sbjct: 476 VAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNL 535
Query: 171 M-PAKDVQAWNLMIAGYLD----NGCVGVAEDLFQKM 202
M P +Q A +D G V A++L + M
Sbjct: 536 MEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESM 572
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 281 bits (720), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 186/599 (31%), Positives = 303/599 (50%), Gaps = 41/599 (6%)
Query: 35 GFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYV 94
G + A LF ++PE D+ +N +I G + D ++ M +++ VT +S ++
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNM-LKEGVTPDSHTFPFL 140
Query: 95 CNGLIDEALRVFHGMPLK-DVVSWNL-----VIGALVN----CQRMDLAESYFKEMGARD 144
NGL + + G L VV + L V ALV C MD+A F D
Sbjct: 141 LNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKED 200
Query: 145 VASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHD 204
V SW +M++G R E+ +L +M V ++ + L + C K+ D
Sbjct: 201 VFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVL-SAC--------SKVKD 251
Query: 205 RDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKY 264
+DL +R+ +S K P + N++++ G + A
Sbjct: 252 KDLC------------KRVHEYVSECKTEPSL--RLENALVNAYAACGEMDIAVRIFRSM 297
Query: 265 PYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFV 324
++ SWT+++ GY E G + A F+ M RD W +MI G E L+ F
Sbjct: 298 KARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFR 357
Query: 325 QMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCG 384
+M+ +G PD T SVLT C+ L +L++G I K V NA+I MY +CG
Sbjct: 358 EMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCG 417
Query: 385 NIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLS 444
+ A F + D +W +++ GLA +G ++A+++F +M+ +PDDIT++GVLS
Sbjct: 418 CSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLS 477
Query: 445 ACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIE 504
AC+++G+VDQ R +F M++ + ++P HY C+VD+LGR GL+ EA +L R +
Sbjct: 478 ACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEIL---RKMPMN 534
Query: 505 VSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIF 564
+ VWGALLGA R+HN+ + E+A ++++ELEP+N VY +L +Y C R +D + +
Sbjct: 535 PNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVR 594
Query: 565 AQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIEREILFDAY 623
++ + +KK PG S I++N H F++GD SH + + L E+ +E F AY
Sbjct: 595 RKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLE----ELAQESTFAAY 649
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 128/506 (25%), Positives = 216/506 (42%), Gaps = 63/506 (12%)
Query: 4 ARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQM------PERDMFTY-- 55
+ A LF K+P+ D V WN MI+G+ K + L+ M P+ F +
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 56 ------------------NTVIAGLMQSDNVQG--------------AKEVFDGMEVRDV 83
+ V GL + VQ A+ VFD DV
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 84 VTWNSMISGYVCNGLIDEALRVFHGMPLKDV----VSWNLVIGALVNCQRMDLAESYFKE 139
+WN MISGY +E++ + M V V+ LV+ A + DL + +
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEY 261
Query: 140 MGARDVASWTIMVNGLVRE----GRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVA 195
+ + N LV G + A ++F M A+DV +W ++ GY++ G + +A
Sbjct: 262 VSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLA 321
Query: 196 EDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETC----EKTWNSIISVLIRN 251
F +M RD SW +I+G + + + ++ F++M E T S+++
Sbjct: 322 RTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHL 381
Query: 252 GLVKEAH---SYLEKYPYSNIASWTNVIVG-YFEMGEVGSAIKVFELMTTRDVTVWNVMI 307
G ++ +Y++K N N ++ YF+ G A KVF M RD W M+
Sbjct: 382 GSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMV 441
Query: 308 FGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARN 367
GL N G+E +K F QM++ PD+ T+ VL+ C+ +D R+ A+ R
Sbjct: 442 VGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRI 501
Query: 368 QFTTVS-NAMITMYARCGNIQSALLEFSSVPIH-DIISWNSIICGLAYHGYAEKALELFE 425
+ + V M+ M R G ++ A +P++ + I W +++ H E EL
Sbjct: 502 EPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHN-DEPMAELAA 560
Query: 426 RMRLTDFKPDDITFVGVLSACS-YAG 450
+ ++ + +PD+ +L C+ YAG
Sbjct: 561 K-KILELEPDNGAVYALL--CNIYAG 583
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 188/638 (29%), Positives = 318/638 (49%), Gaps = 45/638 (7%)
Query: 9 AQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFT--YNTVIAGLMQSD 66
A++ FD + RD WN+MI GY + G + F+ T Y T + L
Sbjct: 105 ARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVL---- 160
Query: 67 NVQGAKEVFDGMEVR----------DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVS 116
+ + V DG ++ DV S+I Y + A +F MP++D+ S
Sbjct: 161 --KACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGS 218
Query: 117 WNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMV-------NGLVREGRIVEARKLFD 169
WN +I CQ + E+ G R + S T++ G G + + +
Sbjct: 219 WNAMISGY--CQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKH 276
Query: 170 KMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISY 229
+ + ++ N +I Y + G + + +F +M+ RDL SW +I + + AIS
Sbjct: 277 GLES-ELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISL 335
Query: 230 FKQM------PETCEKTWNSIISVLIRNGLVKEAHSY----LEK-YPYSNIASWTNVIVG 278
F++M P+ T S+ S+L + G ++ S L K + +I V+V
Sbjct: 336 FQEMRLSRIQPDCL--TLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVM 393
Query: 279 YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGP-SPDNAT 337
Y ++G V SA VF + DV WN +I G +N E ++ + M+E G + + T
Sbjct: 394 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGT 453
Query: 338 FTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP 397
+ SVL CS L G ++H + +K V ++ MY +CG ++ AL F +P
Sbjct: 454 WVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP 513
Query: 398 IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRY 457
+ + WN++I +HG+ EKA+ LF+ M KPD ITFV +LSACS++GLVD+G++
Sbjct: 514 RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQW 573
Query: 458 YFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC 517
F+ M+ Y + P HY C+VD+ GR G ++ A+ I++ ++ ++WGALL AC
Sbjct: 574 CFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKF---IKSMSLQPDASIWGALLSAC 630
Query: 518 RIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPG 577
R+H N+ +G+IA E + E+EP + G +++L+ MY S G+ E I + G++K PG
Sbjct: 631 RVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPG 690
Query: 578 CSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIE 615
S +++++ VF +G+ +HP + + L L +++
Sbjct: 691 WSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLK 728
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 119/449 (26%), Positives = 190/449 (42%), Gaps = 85/449 (18%)
Query: 151 MVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNG-------CV-------GVAE 196
+VN G + AR FD + +DV AWNLMI+GY G C G+
Sbjct: 92 LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTP 151
Query: 197 DLF---------------QKMHDR--------DLTSWKQLINGLVNSRRIDAAISYFKQM 233
D K+H D+ LI+ + + A F +M
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEM 211
Query: 234 PETCEKTWNSIISVLIRNGLVKEA----------------------------------HS 259
P +WN++IS ++G KEA HS
Sbjct: 212 PVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHS 271
Query: 260 YLEKYPYSNIASWTNVIVG-YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEE 318
Y K+ + +N ++ Y E G + KVF+ M RD+ WN +I N+
Sbjct: 272 YSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLR 331
Query: 319 GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQF---TTVSNA 375
+ F +M+ S PD T S+ +I S L + R + Q + + F T+ NA
Sbjct: 332 AISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSV--QGFTLRKGWFLEDITIGNA 389
Query: 376 MITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLT-DFKP 434
++ MYA+ G + SA F+ +P D+ISWN+II G A +G+A +A+E++ M +
Sbjct: 390 VVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAA 449
Query: 435 DDITFVGVLSACSYAGLVDQG-RYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMN 493
+ T+V VL ACS AG + QG + + +KN +L T + D+ G+ G +++A++
Sbjct: 450 NQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVV--TSLADMYGKCGRLEDALS 507
Query: 494 LLNEIRADGIEVSPTVWGALLGACRIHNN 522
L +I V+ W L+ H +
Sbjct: 508 LFYQIP----RVNSVPWNTLIACHGFHGH 532
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/472 (23%), Positives = 208/472 (44%), Gaps = 36/472 (7%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
R + A+ LFD+MP RD +WN MI GY ++G A+ L N + D T ++++
Sbjct: 197 RYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSA 256
Query: 62 LMQSDNVQGAKEVFD-----GMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVS 116
++ + + G+E V+ N +I Y G + + +VF M ++D++S
Sbjct: 257 CTEAGDFNRGVTIHSYSIKHGLESELFVS-NKLIDLYAEFGRLRDCQKVFDRMYVRDLIS 315
Query: 117 WNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGL---------VREGRIVEARKL 167
WN +I A ++ A S F+EM + + + L +R R V+ L
Sbjct: 316 WNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTL 375
Query: 168 FDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAI 227
+D+ N ++ Y G V A +F + + D+ SW +I+G + AI
Sbjct: 376 RKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAI 435
Query: 228 SYFKQMPETCE-----KTWNSIISVLIRNGLVKEA---HSYLEKYP-YSNIASWTNVIVG 278
+ M E E TW S++ + G +++ H L K Y ++ T++
Sbjct: 436 EMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADM 495
Query: 279 YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATF 338
Y + G + A+ +F + + WN +I G + GE+ + F +M + G PD+ TF
Sbjct: 496 YGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITF 555
Query: 339 TSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSN-----AMITMYARCGNIQSALLEF 393
++L+ CS +D G+ ++ + + + M+ MY R G +++AL
Sbjct: 556 VTLLSACSHSGLVDEGQ----WCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFI 611
Query: 394 SSVPIH-DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLS 444
S+ + D W +++ HG + L L + +P+ + + +LS
Sbjct: 612 KSMSLQPDASIWGALLSACRVHGNVD--LGKIASEHLFEVEPEHVGYHVLLS 661
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 117/471 (24%), Positives = 199/471 (42%), Gaps = 70/471 (14%)
Query: 152 VNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDN-----GCVGVAEDLFQKMHDRD 206
V+ L R +++ K Q N+ I+ L N G V +A F + +RD
Sbjct: 57 VHTLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRD 116
Query: 207 LTSWKQLINGL---VNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLV---KEAHSY 260
+ +W +I+G NS + S F + + + SVL V + H
Sbjct: 117 VYAWNLMISGYGRAGNSSEVIRCFSLF-MLSSGLTPDYRTFPSVLKACRTVIDGNKIHCL 175
Query: 261 LEKYPYS-NIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEG 319
K+ + ++ ++I Y VG+A +F+ M RD+ WN MI G ++ +E
Sbjct: 176 ALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEA 235
Query: 320 LKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITM 379
L ++ + D+ T S+L+ C++ + G IH+ +IK VSN +I +
Sbjct: 236 LTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDL 291
Query: 380 YARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITF 439
YA G ++ F + + D+ISWNSII + +A+ LF+ MRL+ +PD +T
Sbjct: 292 YAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTL 351
Query: 440 VGVLS---------ACS-------------------------YA--GLVDQGRYYFDCMK 463
+ + S AC YA GLVD R F+ +
Sbjct: 352 ISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411
Query: 464 NKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG-IEVSPTVWGALLGACRIHNN 522
N + + ++ + G EA+ + N + +G I + W ++L AC
Sbjct: 412 NTDVIS-----WNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGA 466
Query: 523 IKVGEIAGERVMELEPNNSGVYL------ILTEMYLSCGRREDAKRIFAQM 567
++ G R+++ +G+YL L +MY CGR EDA +F Q+
Sbjct: 467 LRQGMKLHGRLLK-----NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 512
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 186/663 (28%), Positives = 322/663 (48%), Gaps = 79/663 (11%)
Query: 8 EAQNLFDKMP---QRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDM----FTYNTVIA 60
+A+++F+ M +RD V+W+ M+ Y NG +A+ +F + E + + Y VI
Sbjct: 115 KAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIR 174
Query: 61 GLMQSDNV-------------------------------------QGAKEVFDGMEVRDV 83
SD V + A +VFD M +V
Sbjct: 175 ACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNV 234
Query: 84 VTWNSMISGYVCNGLIDEALRVFHGMPL----KDVVSWNLVIGALVNCQRMDLAE---SY 136
VTW MI+ + G EA+R F M L D + + V A + + L + S+
Sbjct: 235 VTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSW 294
Query: 137 FKEMGARDVASWTI--MVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGV 194
G D ++ M +G + + RK+FD+M V +W +I GY+ N +
Sbjct: 295 AIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLAT 354
Query: 195 -AEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGL 253
A +LF +M + G V + ++ + + ++ + GL
Sbjct: 355 EAINLFSEM----------ITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGL 404
Query: 254 VKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEN 313
SN + +VI + + + A + FE ++ +++ +N + G N
Sbjct: 405 A------------SNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRN 452
Query: 314 DLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVS 373
E+ K ++ E TF S+L+ +++ ++ G QIH+Q +K+ + V
Sbjct: 453 LNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVC 512
Query: 374 NAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFK 433
NA+I+MY++CG+I +A F+ + ++ISW S+I G A HG+A + LE F +M K
Sbjct: 513 NALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVK 572
Query: 434 PDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMN 493
P+++T+V +LSACS+ GLV +G +F+ M + ++P+ HY C+VDLL R GL+ +A
Sbjct: 573 PNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFE 632
Query: 494 LLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLS 553
+N + + VW LGACR+H+N ++G++A +++EL+PN Y+ L+ +Y
Sbjct: 633 FINTM---PFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYAC 689
Query: 554 CGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTE 613
G+ E++ + +MKE + KE GCSWI++ D H F GD++HP H++ L+ L TE
Sbjct: 690 AGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITE 749
Query: 614 IER 616
I+R
Sbjct: 750 IKR 752
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 135/580 (23%), Positives = 244/580 (42%), Gaps = 53/580 (9%)
Query: 14 DKMPQRDTVTWNVMIRGY-----FKNGFLDNAMCL-FNQMPERDMFTYNTVIAGLMQSDN 67
D + D+VT++ +++ F+ G L +A + F+ P D YN++I+ +S +
Sbjct: 55 DGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEP--DSVLYNSLISLYSKSGD 112
Query: 68 VQGAKEVFDGME---VRDVVTWNSMISGYVCNGLIDEALRVF-----HGMPLKDVVSWNL 119
A++VF+ M RDVV+W++M++ Y NG +A++VF G+ D +
Sbjct: 113 SAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYC-YTA 171
Query: 120 VIGALVNCQRMDLAE---SYFKEMG--ARDVASWTIMVNGLVR-EGRIVEARKLFDKMPA 173
VI A N + + + + G DV +++ V+ E A K+FDKM
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231
Query: 174 KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQM 233
+V W LMI + G A F M S K ++ + ++ +S KQ+
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291
Query: 234 PETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFE 293
+W IR+GLV + S ++ G V KVF+
Sbjct: 292 -----HSW------AIRSGLVDDVE-----------CSLVDMYAKCSADGSVDDCRKVFD 329
Query: 294 LMTTRDVTVWNVMIFGLGEN-DLGEEGLKFFVQMKESGP-SPDNATFTSVLTICSDLPTL 351
M V W +I G +N +L E + F +M G P++ TF+S C +L
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP 389
Query: 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGL 411
+G+Q+ QA K ++V+N++I+M+ + ++ A F S+ +++S+N+ + G
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449
Query: 412 AYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR 471
+ E+A +L + + TF +LS + G + +G + K L
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVV-KLGLSCN 508
Query: 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN-NIKVGEIAG 530
++ + + G ID A + N + + W +++ H I+V E
Sbjct: 509 QPVCNALISMYSKCGSIDTASRVFNFMENRNV----ISWTSMITGFAKHGFAIRVLETFN 564
Query: 531 ERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570
+ + E N Y+ + G + R F M E+
Sbjct: 565 QMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYED 604
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 106/450 (23%), Positives = 197/450 (43%), Gaps = 47/450 (10%)
Query: 7 QEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMP----ERDMFTYNTVIAGL 62
+ A +FDKM + + VTW +MI + GF A+ F M E D FT ++V +
Sbjct: 220 ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279
Query: 63 MQSDNVQGAKEVF-----DGMEVRDV-VTWNSMISGYVCNGLIDEALRVFHGMPLKDVVS 116
+ +N+ K++ G+ V DV + M + +G +D+ +VF M V+S
Sbjct: 280 AELENLSLGKQLHSWAIRSGL-VDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMS 338
Query: 117 WN-LVIGALVNCQRMDLAESYFKEM---GARDVASWTIMVNGLVREGRIVEAR------- 165
W L+ G + NC A + F EM G + +T + G + + R
Sbjct: 339 WTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFS-SAFKACGNLSDPRVGKQVLG 397
Query: 166 KLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDA 225
+ F + A + N +I+ ++ + + A+ F+ + +++L S+ ++G + +
Sbjct: 398 QAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQ 457
Query: 226 AISYFKQMPETCEK-------TWNSIISVLIRNGLVKEA---HSYLEKYPYSNIASWTNV 275
A FK + E E+ T+ S++S + G +++ HS + K S N
Sbjct: 458 A---FKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNA 514
Query: 276 IVG-YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD 334
++ Y + G + +A +VF M R+V W MI G ++ L+ F QM E G P+
Sbjct: 515 LISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPN 574
Query: 335 NATFTSVLTICSDLPTLDLG-RQIHA----QAIKIARNQFTTVSNAMITMYARCGNIQSA 389
T+ ++L+ CS + + G R ++ IK + M+ + R G + A
Sbjct: 575 EVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYA----CMVDLLCRAGLLTDA 630
Query: 390 LLEFSSVPIH-DIISWNSIICGLAYHGYAE 418
+++P D++ W + + H E
Sbjct: 631 FEFINTMPFQADVLVWRTFLGACRVHSNTE 660
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 129/279 (46%), Gaps = 26/279 (9%)
Query: 3 NARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFL-DNAMCLFNQM-----PERDMFTYN 56
+ + + + +FD+M ++W +I GY KN L A+ LF++M E + FT++
Sbjct: 318 DGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFS 377
Query: 57 TVIAGLMQSDNVQGAKEVFDGMEVRDVVT----WNSMISGYVCNGLIDEALRVFHGMPLK 112
+ + + K+V R + + NS+IS +V + +++A R F + K
Sbjct: 378 SAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEK 437
Query: 113 DVVSWNLVIGALVNCQRMDLAESY--FKEMGARD--VASWTI--MVNGLVREGRIVEARK 166
++VS+N + C+ ++ +++ E+ R+ V+++T +++G+ G I + +
Sbjct: 438 NLVSYNTFLDG--TCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQ 495
Query: 167 LFDKMPAKDVQA----WNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRR 222
+ ++ + N +I+ Y G + A +F M +R++ SW +I G
Sbjct: 496 IHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGF 555
Query: 223 IDAAISYFKQMPETC----EKTWNSIISVLIRNGLVKEA 257
+ F QM E E T+ +I+S GLV E
Sbjct: 556 AIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEG 594
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 103/235 (43%), Gaps = 51/235 (21%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDM----FTYN 56
+++ R+++AQ F+ + +++ V++N + G +N + A L +++ ER++ FT+
Sbjct: 419 VKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFA 478
Query: 57 TVIAGLM-----------------------------------QSDNVQGAKEVFDGMEVR 81
++++G+ + ++ A VF+ ME R
Sbjct: 479 SLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENR 538
Query: 82 DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV--IGALVNCQRMDLAESYFKE 139
+V++W SMI+G+ +G L F+ M +++ V N V + L C + L ++
Sbjct: 539 NVISWTSMITGFAKHGFAIRVLETFNQM-IEEGVKPNEVTYVAILSACSHVGLVSEGWRH 597
Query: 140 MGAR--------DVASWTIMVNGLVREGRIVEARKLFDKMPAK-DVQAWNLMIAG 185
+ + + MV+ L R G + +A + + MP + DV W +
Sbjct: 598 FNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGA 652
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 120/292 (41%), Gaps = 52/292 (17%)
Query: 326 MKESGPSP-DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCG 384
M G P D+ TF+S+L C LG+ +HA+ I+ + + N++I++Y++ G
Sbjct: 52 MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111
Query: 385 NIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVG 441
+ A F ++ D++SW++++ +G A+++F P+D +
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171
Query: 442 VLSACSYAGLVDQGRYYF---------------------------DCMKNKYFLQPRSAH 474
V+ ACS + V GR + +N Y + + +
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231
Query: 475 -----YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGE-- 527
+T ++ + G EA+ ++ G E ++ AC N+ +G+
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291
Query: 528 ----IAGERVMELEPNNSGVYLILTEMYLSC---GRREDAKRIFAQMKENGV 572
I V ++E + L +MY C G +D +++F +M+++ V
Sbjct: 292 HSWAIRSGLVDDVECS-------LVDMYAKCSADGSVDDCRKVFDRMEDHSV 336
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 280 bits (715), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 203/662 (30%), Positives = 321/662 (48%), Gaps = 104/662 (15%)
Query: 36 FLDNAMCLFNQMPE-RDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYV 94
L+ MC + D+F + +++ +S ++ A++VF+ ME R+ VT N ++ G V
Sbjct: 226 LLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLV 285
Query: 95 CNGLIDEALRVFHGM-PLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMV- 152
+EA ++F M + DV + VI L + LAE + G R+V I
Sbjct: 286 RQKWGEEATKLFMDMNSMIDVSPESYVI-LLSSFPEYSLAEEVGLKKG-REVHGHVITTG 343
Query: 153 ---------NGLV----REGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLF 199
NGLV + G I +AR++F M KD +WN MI G NGC A + +
Sbjct: 344 LVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERY 403
Query: 200 QKMHDRDLT----------------SWKQL---INGLVNSRRIDAAISY----------- 229
+ M D+ W +L I+G ID +S
Sbjct: 404 KSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAET 463
Query: 230 ---------FKQMPETCEKTWNSIISVLIRNG---------------------------- 252
F MPE + +WNSII L R+
Sbjct: 464 GYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSV 523
Query: 253 -----------LVKEAHSYLEKYPYSNIASWTNVIVG-YFEMGEVGSAIKVFELMTTR-D 299
L K+ H K ++ A+ N ++ Y + GE+ K+F M R D
Sbjct: 524 LSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRD 583
Query: 300 VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHA 359
WN MI G N+L + L M ++G D+ + +VL+ + + TL+ G ++HA
Sbjct: 584 NVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHA 643
Query: 360 QAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEK 419
+++ V +A++ MY++CG + AL F+++P+ + SWNS+I G A HG E+
Sbjct: 644 CSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEE 703
Query: 420 ALELFERMRLT-DFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCV 478
AL+LFE M+L PD +TFVGVLSACS+AGL+++G +F+ M + Y L PR H++C+
Sbjct: 704 ALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCM 763
Query: 479 VDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIK--VGEIAGERVMEL 536
D+LGR G +D+ + + ++ ++ + +W +LGAC N K +G+ A E + +L
Sbjct: 764 ADVLGRAGELDKLEDFIEKMP---MKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQL 820
Query: 537 EPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSS 596
EP N+ Y++L MY + GR ED + +MK+ VKKE G SW+ + DG H+F++GD S
Sbjct: 821 EPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKS 880
Query: 597 HP 598
HP
Sbjct: 881 HP 882
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 113/438 (25%), Positives = 195/438 (44%), Gaps = 34/438 (7%)
Query: 9 AQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNV 68
A+ +FD+MP R+ V+W ++ GY +NG A+ M + +F+ ++++
Sbjct: 55 ARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQE 114
Query: 69 QGAKEVFDGMEVR----------DVVTWNSMISGY-VCNGLIDEALRVFHGMPLKDVVSW 117
G+ + G ++ D V N +IS Y C G + AL F + +K+ VSW
Sbjct: 115 IGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSW 174
Query: 118 NLVIGALVNCQRMDLAESYFKEM---GARDV----ASWTIMVNGLVR-EGRIVEARKLFD 169
N +I A F M G+R S L + R++E
Sbjct: 175 NSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTI 234
Query: 170 KMPA--KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAI 227
+ D+ + +++ + +G + A +F +M R+ + L+ GLV + + A
Sbjct: 235 QKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEAT 294
Query: 228 SYF---KQMPETCEKTWNSIISVLIRNGLVKEA--HSYLEKYPYSNIASWTNVIVG---- 278
F M + +++ ++S L +E E + + + +VG
Sbjct: 295 KLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNG 354
Query: 279 ----YFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD 334
Y + G + A +VF MT +D WN MI GL +N E ++ + M+ P
Sbjct: 355 LVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPG 414
Query: 335 NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFS 394
+ T S L+ C+ L LG+QIH +++K+ + +VSNA++T+YA G + FS
Sbjct: 415 SFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFS 474
Query: 395 SVPIHDIISWNSIICGLA 412
S+P HD +SWNSII LA
Sbjct: 475 SMPEHDQVSWNSIIGALA 492
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 4/178 (2%)
Query: 274 NVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSP 333
N+I Y E G+ SA KVF+ M R+ W ++ G N +E L F M + G
Sbjct: 41 NLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFS 100
Query: 334 DNATFTSVLTICSDLPTLDL--GRQIHAQAIKIARNQFTTVSNAMITMYARC-GNIQSAL 390
+ F SVL C ++ ++ + GRQIH K++ VSN +I+MY +C G++ AL
Sbjct: 101 NQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYAL 160
Query: 391 LEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVG-VLSACS 447
F + + + +SWNSII + G A +F M+ +P + TF V +ACS
Sbjct: 161 CAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACS 218
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 131/294 (44%), Gaps = 16/294 (5%)
Query: 166 KLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDA 225
+L+ KDV N +I YL+ G A +F +M R+ SW +++G +
Sbjct: 26 RLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKE 85
Query: 226 AISYFKQMPE----TCEKTWNSIISVLIRNGLV-----KEAHSYLEKYPYSNIASWTNVI 276
A+ + + M + + + + S++ G V ++ H + K Y+ A +NV+
Sbjct: 86 ALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVL 145
Query: 277 VGYF--EMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD 334
+ + +G VG A+ F + ++ WN +I + + F M+ G P
Sbjct: 146 ISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPT 205
Query: 335 NATFTSVLTICSDL--PTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLE 392
TF S++T L P + L QI K V + +++ +A+ G++ A
Sbjct: 206 EYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKV 265
Query: 393 FSSVPIHDIISWNSIICGLAYHGYAEKALELFERM-RLTDFKPDDITFVGVLSA 445
F+ + + ++ N ++ GL + E+A +LF M + D P+ ++V +LS+
Sbjct: 266 FNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE--SYVILLSS 317
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,159,111
Number of Sequences: 539616
Number of extensions: 10134928
Number of successful extensions: 33521
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 21055
Number of HSP's gapped (non-prelim): 2893
length of query: 624
length of database: 191,569,459
effective HSP length: 124
effective length of query: 500
effective length of database: 124,657,075
effective search space: 62328537500
effective search space used: 62328537500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)