Query 006955
Match_columns 624
No_of_seqs 508 out of 3195
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 16:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4.9E-88 1.1E-92 735.3 64.0 612 2-618 133-768 (857)
2 PLN03081 pentatricopeptide (PP 100.0 6.2E-73 1.3E-77 602.3 54.9 508 81-618 85-605 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 9.4E-71 2E-75 599.8 54.3 546 19-567 49-651 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.2E-62 2.5E-67 524.7 51.5 498 50-577 368-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.9E-62 6.2E-67 521.7 44.4 496 2-508 382-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 6.9E-60 1.5E-64 502.3 42.5 487 19-508 85-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-36 2.4E-41 340.9 51.6 563 2-572 273-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5E-36 1.1E-40 335.6 51.9 559 3-568 308-898 (899)
9 PRK11447 cellulose synthase su 100.0 3.1E-27 6.7E-32 264.4 53.1 557 2-572 40-743 (1157)
10 PRK11447 cellulose synthase su 100.0 2.1E-25 4.6E-30 249.7 49.7 538 24-571 31-701 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1E-24 2.2E-29 232.8 49.7 552 3-572 57-742 (987)
12 PRK09782 bacteriophage N4 rece 99.9 9.4E-23 2E-27 217.8 52.7 532 23-571 44-707 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 3.4E-22 7.4E-27 189.5 29.6 432 118-559 52-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 7.5E-21 1.6E-25 180.5 27.3 414 148-571 51-486 (966)
15 KOG2002 TPR-containing nuclear 99.9 3.2E-19 7E-24 178.5 39.0 558 6-572 146-800 (1018)
16 KOG2002 TPR-containing nuclear 99.9 1.8E-19 3.9E-24 180.3 34.8 527 37-571 146-746 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 4.9E-19 1.1E-23 186.6 37.2 251 313-571 307-572 (615)
18 PRK11788 tetratricopeptide rep 99.8 3.3E-19 7.1E-24 178.6 25.9 288 281-577 47-354 (389)
19 TIGR00990 3a0801s09 mitochondr 99.8 1.7E-17 3.6E-22 175.0 36.6 414 117-542 130-577 (615)
20 PRK15174 Vi polysaccharide exp 99.8 6.4E-18 1.4E-22 177.3 32.2 367 155-570 15-403 (656)
21 PRK11788 tetratricopeptide rep 99.8 2.6E-18 5.7E-23 172.1 27.3 227 303-535 110-346 (389)
22 PRK15174 Vi polysaccharide exp 99.8 1.1E-17 2.3E-22 175.7 32.4 344 218-572 16-383 (656)
23 PRK10049 pgaA outer membrane p 99.8 1.4E-17 2.9E-22 178.8 33.8 118 117-235 18-144 (765)
24 PRK10049 pgaA outer membrane p 99.8 1.8E-16 4E-21 170.1 38.9 391 144-570 14-456 (765)
25 PRK14574 hmsH outer membrane p 99.8 2.1E-16 4.5E-21 166.1 37.5 437 85-543 36-520 (822)
26 PRK14574 hmsH outer membrane p 99.8 5.1E-15 1.1E-19 155.7 40.5 419 150-570 39-513 (822)
27 KOG2076 RNA polymerase III tra 99.8 8.8E-15 1.9E-19 146.2 37.4 564 3-571 152-850 (895)
28 KOG0495 HAT repeat protein [RN 99.7 1.7E-13 3.7E-18 132.0 40.8 363 209-584 518-892 (913)
29 KOG2003 TPR repeat-containing 99.7 4.4E-16 9.5E-21 143.1 21.7 454 85-556 203-709 (840)
30 KOG2076 RNA polymerase III tra 99.7 6.7E-13 1.4E-17 133.1 35.6 522 30-553 148-786 (895)
31 PF13429 TPR_15: Tetratricopep 99.7 2E-16 4.4E-21 149.7 10.2 257 307-569 15-276 (280)
32 KOG0495 HAT repeat protein [RN 99.6 1.4E-11 2.9E-16 119.2 38.0 472 64-551 388-895 (913)
33 KOG2003 TPR repeat-containing 99.6 3.8E-14 8.2E-19 130.5 19.3 115 27-141 207-336 (840)
34 KOG0547 Translocase of outer m 99.6 9.5E-13 2.1E-17 122.8 28.1 214 347-568 338-564 (606)
35 KOG4422 Uncharacterized conser 99.6 4.2E-12 9.1E-17 116.5 29.5 378 176-571 116-552 (625)
36 KOG4422 Uncharacterized conser 99.6 1.7E-11 3.6E-16 112.7 32.7 429 23-502 118-591 (625)
37 KOG1915 Cell cycle control pro 99.6 1.8E-11 3.9E-16 113.9 32.9 514 63-612 84-670 (677)
38 KOG1155 Anaphase-promoting com 99.6 4.2E-12 9.1E-17 117.8 28.6 326 236-569 162-494 (559)
39 PRK10747 putative protoheme IX 99.6 1.5E-12 3.2E-17 129.1 26.1 277 282-569 97-389 (398)
40 KOG1155 Anaphase-promoting com 99.5 1.4E-11 3.1E-16 114.4 27.8 341 216-568 173-534 (559)
41 KOG1915 Cell cycle control pro 99.5 1.3E-10 2.7E-15 108.4 32.1 453 83-569 73-584 (677)
42 PF13429 TPR_15: Tetratricopep 99.5 5.5E-14 1.2E-18 133.1 10.6 252 275-535 14-276 (280)
43 KOG2047 mRNA splicing factor [ 99.5 1.2E-09 2.6E-14 105.8 39.2 521 21-564 102-717 (835)
44 PRK10747 putative protoheme IX 99.5 1.9E-11 4.1E-16 121.2 27.7 281 220-537 97-391 (398)
45 KOG1173 Anaphase-promoting com 99.5 6.3E-11 1.4E-15 113.0 28.9 261 304-571 248-519 (611)
46 KOG1126 DNA-binding cell divis 99.5 3.5E-12 7.7E-17 124.0 21.0 276 284-569 334-619 (638)
47 KOG1126 DNA-binding cell divis 99.5 1.7E-12 3.7E-17 126.2 18.2 275 253-539 334-623 (638)
48 TIGR00540 hemY_coli hemY prote 99.5 4.1E-11 8.8E-16 119.6 27.7 79 486-567 313-396 (409)
49 TIGR00540 hemY_coli hemY prote 99.5 4.2E-11 9.1E-16 119.5 26.8 282 248-535 94-398 (409)
50 KOG0547 Translocase of outer m 99.4 1E-09 2.2E-14 103.0 30.0 220 310-538 336-568 (606)
51 COG2956 Predicted N-acetylgluc 99.4 1.7E-10 3.6E-15 102.5 23.5 254 312-570 47-311 (389)
52 KOG3785 Uncharacterized conser 99.4 8.5E-10 1.9E-14 99.2 27.4 444 59-544 29-497 (557)
53 COG3071 HemY Uncharacterized e 99.4 1.8E-10 3.9E-15 105.6 23.6 279 282-569 97-389 (400)
54 TIGR02521 type_IV_pilW type IV 99.4 3.7E-11 8.1E-16 111.1 20.0 199 370-570 31-232 (234)
55 KOG2376 Signal recognition par 99.4 1.7E-09 3.6E-14 104.0 30.2 443 89-565 18-515 (652)
56 COG2956 Predicted N-acetylgluc 99.4 1.9E-10 4.1E-15 102.2 21.8 238 244-517 75-325 (389)
57 KOG1173 Anaphase-promoting com 99.4 1.3E-09 2.9E-14 104.2 28.3 281 268-553 243-535 (611)
58 KOG2047 mRNA splicing factor [ 99.4 1.4E-08 3.1E-13 98.6 34.6 202 372-576 479-693 (835)
59 COG3071 HemY Uncharacterized e 99.3 1.5E-09 3.3E-14 99.6 26.3 280 220-535 97-389 (400)
60 KOG3785 Uncharacterized conser 99.3 4E-09 8.8E-14 94.9 27.9 458 28-505 29-518 (557)
61 KOG3616 Selective LIM binding 99.3 2.7E-08 5.8E-13 98.1 34.6 344 20-397 647-1022(1636)
62 KOG4318 Bicoid mRNA stability 99.3 6.5E-09 1.4E-13 104.6 29.3 467 49-574 22-598 (1088)
63 KOG1174 Anaphase-promoting com 99.3 2.1E-08 4.5E-13 92.4 28.9 269 266-542 229-506 (564)
64 KOG4162 Predicted calmodulin-b 99.3 9.4E-09 2E-13 102.2 28.1 397 174-581 321-793 (799)
65 KOG3616 Selective LIM binding 99.2 3E-07 6.6E-12 90.8 37.4 434 90-571 564-1025(1636)
66 KOG2376 Signal recognition par 99.2 2.3E-08 5.1E-13 96.4 28.2 424 28-460 19-515 (652)
67 KOG3617 WD40 and TPR repeat-co 99.2 7.6E-08 1.6E-12 96.1 32.3 300 4-326 742-1106(1416)
68 COG3063 PilF Tfp pilus assembl 99.2 1.3E-09 2.8E-14 92.6 16.9 164 404-572 38-204 (250)
69 KOG1129 TPR repeat-containing 99.2 6.6E-10 1.4E-14 98.8 15.5 227 340-571 228-459 (478)
70 TIGR02521 type_IV_pilW type IV 99.2 2.7E-09 5.8E-14 98.6 20.4 192 342-538 38-234 (234)
71 PRK12370 invasion protein regu 99.2 1.5E-09 3.2E-14 112.7 20.0 246 314-571 275-536 (553)
72 PRK12370 invasion protein regu 99.2 3.5E-09 7.6E-14 110.0 22.3 174 386-567 320-499 (553)
73 KOG4318 Bicoid mRNA stability 99.2 1.4E-09 3.1E-14 109.1 18.2 253 321-609 11-264 (1088)
74 PF13041 PPR_2: PPR repeat fam 99.2 7.5E-11 1.6E-15 77.7 6.4 50 399-448 1-50 (50)
75 KOG1840 Kinesin light chain [C 99.2 2.3E-09 5.1E-14 105.8 18.9 234 336-569 200-478 (508)
76 PF13041 PPR_2: PPR repeat fam 99.2 6.4E-11 1.4E-15 78.1 5.1 50 298-347 1-50 (50)
77 KOG1174 Anaphase-promoting com 99.1 3.8E-07 8.2E-12 84.3 30.9 292 267-571 192-501 (564)
78 KOG0985 Vesicle coat protein c 99.1 1.4E-06 3E-11 89.4 36.8 223 300-554 1104-1326(1666)
79 PRK11189 lipoprotein NlpI; Pro 99.1 3.5E-09 7.6E-14 100.4 18.0 187 375-571 69-266 (296)
80 KOG1156 N-terminal acetyltrans 99.1 3.7E-07 8E-12 89.3 31.5 102 398-503 366-470 (700)
81 KOG4162 Predicted calmodulin-b 99.1 8.2E-08 1.8E-12 95.7 27.2 415 112-542 321-789 (799)
82 KOG1129 TPR repeat-containing 99.1 2E-09 4.3E-14 95.8 13.0 231 306-542 229-464 (478)
83 KOG1127 TPR repeat-containing 99.1 2.3E-07 5E-12 94.9 28.2 168 5-172 473-657 (1238)
84 COG3063 PilF Tfp pilus assembl 99.1 8.5E-08 1.8E-12 81.8 21.0 192 375-570 40-236 (250)
85 KOG3617 WD40 and TPR repeat-co 99.0 6E-06 1.3E-10 83.1 36.0 234 17-264 722-993 (1416)
86 KOG0985 Vesicle coat protein c 99.0 2.4E-05 5.3E-10 80.6 40.8 156 384-565 1089-1244(1666)
87 PRK11189 lipoprotein NlpI; Pro 99.0 9.8E-08 2.1E-12 90.6 21.7 222 311-540 37-269 (296)
88 PF04733 Coatomer_E: Coatomer 99.0 1.4E-08 3.1E-13 94.6 15.2 149 411-570 112-265 (290)
89 KOG1156 N-terminal acetyltrans 99.0 7.8E-07 1.7E-11 87.1 26.4 420 126-584 19-487 (700)
90 KOG0624 dsRNA-activated protei 99.0 8.4E-07 1.8E-11 80.0 24.4 191 345-543 165-377 (504)
91 PF12569 NARP1: NMDA receptor- 99.0 4E-07 8.7E-12 91.4 25.1 284 277-569 12-333 (517)
92 PF12569 NARP1: NMDA receptor- 99.0 4.7E-07 1E-11 90.9 25.5 128 403-535 196-333 (517)
93 PF04733 Coatomer_E: Coatomer 98.9 5E-08 1.1E-12 91.1 17.3 157 377-541 109-270 (290)
94 KOG1125 TPR repeat-containing 98.9 5.5E-08 1.2E-12 93.9 17.7 220 347-571 297-528 (579)
95 KOG0548 Molecular co-chaperone 98.9 3.8E-07 8.2E-12 87.5 23.0 96 122-217 10-114 (539)
96 KOG1840 Kinesin light chain [C 98.9 8.3E-08 1.8E-12 95.0 16.1 171 302-499 285-477 (508)
97 cd05804 StaR_like StaR_like; a 98.8 2.8E-06 6E-11 84.0 26.4 259 309-571 52-337 (355)
98 KOG0548 Molecular co-chaperone 98.8 7.3E-07 1.6E-11 85.6 20.4 177 376-564 304-483 (539)
99 PRK10370 formate-dependent nit 98.8 3.5E-07 7.5E-12 80.6 17.2 148 408-572 23-175 (198)
100 KOG1127 TPR repeat-containing 98.8 4.6E-06 1E-10 85.8 26.5 435 116-568 494-994 (1238)
101 KOG0624 dsRNA-activated protei 98.8 5.2E-06 1.1E-10 75.1 23.6 302 180-501 42-370 (504)
102 KOG4340 Uncharacterized conser 98.8 1.3E-05 2.7E-10 71.2 25.5 405 148-569 13-442 (459)
103 TIGR03302 OM_YfiO outer membra 98.7 7.4E-07 1.6E-11 82.1 17.5 59 512-570 171-232 (235)
104 PRK15359 type III secretion sy 98.7 3.1E-07 6.7E-12 76.5 12.2 105 442-550 30-135 (144)
105 PRK15359 type III secretion sy 98.7 2.9E-07 6.2E-12 76.7 11.8 109 457-571 14-122 (144)
106 PRK04841 transcriptional regul 98.7 2.9E-05 6.3E-10 87.2 31.3 358 214-571 348-761 (903)
107 KOG4340 Uncharacterized conser 98.7 3.8E-06 8.2E-11 74.4 18.6 273 24-297 13-338 (459)
108 cd05804 StaR_like StaR_like; a 98.6 6E-05 1.3E-09 74.5 27.2 267 302-571 8-294 (355)
109 COG5010 TadD Flp pilus assembl 98.6 4.6E-06 1E-10 73.1 16.5 156 405-565 70-226 (257)
110 PRK10370 formate-dependent nit 98.5 3.8E-06 8.3E-11 74.0 15.1 155 377-545 23-182 (198)
111 PRK15179 Vi polysaccharide bio 98.5 1.2E-05 2.6E-10 84.2 21.0 222 337-582 30-257 (694)
112 KOG1070 rRNA processing protei 98.5 6.1E-06 1.3E-10 87.9 18.5 200 368-573 1456-1666(1710)
113 KOG1125 TPR repeat-containing 98.5 4E-06 8.7E-11 81.4 15.9 256 276-563 292-564 (579)
114 TIGR02552 LcrH_SycD type III s 98.5 1.5E-06 3.3E-11 72.1 11.2 103 468-571 12-115 (135)
115 KOG1128 Uncharacterized conser 98.5 4.7E-06 1E-10 83.1 15.8 212 340-572 403-618 (777)
116 PRK04841 transcriptional regul 98.5 8.3E-05 1.8E-09 83.6 28.2 355 183-539 348-763 (903)
117 KOG1914 mRNA cleavage and poly 98.5 0.00037 8E-09 67.5 27.1 149 315-465 346-501 (656)
118 COG4783 Putative Zn-dependent 98.4 3.2E-05 6.9E-10 74.0 19.2 117 446-567 316-434 (484)
119 KOG1128 Uncharacterized conser 98.4 1.4E-05 3E-10 79.8 17.0 232 267-516 396-632 (777)
120 PF12854 PPR_1: PPR repeat 98.4 3.6E-07 7.7E-12 53.8 3.6 32 467-498 2-33 (34)
121 COG5010 TadD Flp pilus assembl 98.4 1.2E-05 2.7E-10 70.4 14.6 154 376-534 72-229 (257)
122 PLN02789 farnesyltranstransfer 98.4 7.8E-05 1.7E-09 70.8 21.3 163 385-554 87-268 (320)
123 KOG1070 rRNA processing protei 98.4 2.5E-05 5.5E-10 83.4 19.3 159 372-535 1532-1699(1710)
124 PLN02789 farnesyltranstransfer 98.4 2.4E-05 5.3E-10 74.2 17.7 186 380-571 47-251 (320)
125 KOG3081 Vesicle coat complex C 98.4 0.00011 2.3E-09 64.6 19.1 154 377-538 115-273 (299)
126 TIGR03302 OM_YfiO outer membra 98.4 1.6E-05 3.5E-10 73.2 15.5 159 375-538 38-234 (235)
127 KOG3060 Uncharacterized conser 98.3 3.5E-05 7.5E-10 67.1 15.6 120 448-570 98-220 (289)
128 PF12854 PPR_1: PPR repeat 98.3 6E-07 1.3E-11 52.9 3.5 33 430-462 1-33 (34)
129 PRK15363 pathogenicity island 98.3 7E-06 1.5E-10 67.0 10.5 98 472-571 35-133 (157)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 9.9E-06 2.2E-10 78.3 13.4 124 439-568 172-295 (395)
131 PRK14720 transcript cleavage f 98.3 6.7E-05 1.5E-09 79.5 20.3 45 508-552 224-268 (906)
132 KOG3060 Uncharacterized conser 98.3 3.9E-05 8.5E-10 66.8 15.0 154 414-571 25-184 (289)
133 KOG2053 Mitochondrial inherita 98.2 0.01 2.2E-07 61.5 34.0 535 32-597 20-635 (932)
134 TIGR02552 LcrH_SycD type III s 98.2 2.2E-05 4.7E-10 65.1 11.8 114 423-542 5-120 (135)
135 COG4783 Putative Zn-dependent 98.2 0.00025 5.3E-09 68.1 19.8 145 404-571 309-455 (484)
136 KOG3081 Vesicle coat complex C 98.2 0.00022 4.7E-09 62.8 16.9 151 408-569 115-270 (299)
137 PRK15179 Vi polysaccharide bio 98.2 5.6E-05 1.2E-09 79.3 16.1 162 347-514 61-229 (694)
138 KOG1914 mRNA cleavage and poly 98.1 0.01 2.2E-07 58.0 30.6 433 113-566 19-535 (656)
139 PF09976 TPR_21: Tetratricopep 98.1 5.7E-05 1.2E-09 63.2 12.6 117 449-566 24-143 (145)
140 PF07079 DUF1347: Protein of u 98.1 0.0059 1.3E-07 58.3 25.5 425 126-567 18-521 (549)
141 PF12895 Apc3: Anaphase-promot 98.1 4.3E-06 9.4E-11 62.4 4.3 81 485-566 2-83 (84)
142 cd00189 TPR Tetratricopeptide 98.1 3.7E-05 7.9E-10 59.1 9.7 95 475-570 3-97 (100)
143 PRK14720 transcript cleavage f 98.0 0.0027 5.8E-08 67.8 25.2 232 240-518 33-268 (906)
144 TIGR02795 tol_pal_ybgF tol-pal 98.0 6.5E-05 1.4E-09 60.6 10.9 96 474-571 4-106 (119)
145 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.4E-10 48.4 4.6 35 402-436 1-35 (35)
146 KOG0553 TPR repeat-containing 98.0 3.8E-05 8.3E-10 68.8 9.6 108 446-558 91-200 (304)
147 KOG2053 Mitochondrial inherita 98.0 0.029 6.2E-07 58.4 31.2 407 156-575 20-507 (932)
148 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00012 2.5E-09 71.0 12.7 119 376-499 175-295 (395)
149 COG4235 Cytochrome c biogenesi 98.0 0.00011 2.3E-09 66.6 11.5 107 469-576 152-262 (287)
150 PF13414 TPR_11: TPR repeat; P 97.9 2.5E-05 5.5E-10 55.6 6.1 65 506-570 2-67 (69)
151 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.4E-10 46.8 4.5 33 402-434 2-34 (34)
152 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00014 3E-09 58.7 10.9 105 439-545 5-114 (119)
153 KOG2041 WD40 repeat protein [G 97.9 0.025 5.4E-07 57.0 27.5 210 99-326 679-904 (1189)
154 TIGR00756 PPR pentatricopeptid 97.9 1.4E-05 3.1E-10 47.8 3.4 34 301-334 1-34 (35)
155 PLN03088 SGT1, suppressor of 97.9 0.00018 4E-09 70.1 12.9 103 443-550 9-113 (356)
156 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.027 5.8E-07 53.9 27.7 134 401-539 397-534 (660)
157 PF09976 TPR_21: Tetratricopep 97.9 0.00048 1E-08 57.6 13.4 126 403-534 14-145 (145)
158 PF13432 TPR_16: Tetratricopep 97.8 5.1E-05 1.1E-09 53.3 6.0 58 513-570 3-60 (65)
159 PF13812 PPR_3: Pentatricopept 97.8 1.9E-05 4.2E-10 46.9 3.1 33 301-333 2-34 (34)
160 PLN03088 SGT1, suppressor of 97.8 0.0002 4.2E-09 69.9 11.8 104 407-517 8-113 (356)
161 KOG0553 TPR repeat-containing 97.8 5.6E-05 1.2E-09 67.8 7.0 87 481-569 90-177 (304)
162 COG4700 Uncharacterized protei 97.8 0.004 8.7E-08 51.8 16.8 134 432-569 85-221 (251)
163 KOG0550 Molecular chaperone (D 97.8 0.0014 3E-08 61.6 15.6 157 409-570 177-350 (486)
164 PRK02603 photosystem I assembl 97.8 0.00029 6.3E-09 61.0 10.9 99 472-570 35-149 (172)
165 PRK10153 DNA-binding transcrip 97.7 0.001 2.2E-08 67.8 15.9 140 398-541 334-487 (517)
166 PF04840 Vps16_C: Vps16, C-ter 97.7 0.019 4.2E-07 54.5 23.1 109 437-565 178-286 (319)
167 CHL00033 ycf3 photosystem I as 97.7 0.0003 6.4E-09 60.7 10.1 96 472-567 35-139 (168)
168 PF07079 DUF1347: Protein of u 97.7 0.05 1.1E-06 52.2 27.4 59 411-477 472-530 (549)
169 PF13432 TPR_16: Tetratricopep 97.7 0.00011 2.3E-09 51.6 5.8 63 478-541 3-65 (65)
170 PF12688 TPR_5: Tetratrico pep 97.7 0.00083 1.8E-08 53.1 11.3 93 477-569 6-103 (120)
171 KOG2280 Vacuolar assembly/sort 97.6 0.082 1.8E-06 54.1 26.6 319 211-564 441-793 (829)
172 cd00189 TPR Tetratricopeptide 97.6 0.00039 8.4E-09 53.2 8.7 93 442-538 6-99 (100)
173 PF05843 Suf: Suppressor of fo 97.6 0.0014 3.1E-08 61.5 13.6 135 402-540 2-140 (280)
174 PF13371 TPR_9: Tetratricopept 97.6 0.00024 5.3E-09 51.2 6.5 57 515-571 3-59 (73)
175 PF14559 TPR_19: Tetratricopep 97.6 8.3E-05 1.8E-09 52.8 3.8 53 518-570 2-54 (68)
176 PF01535 PPR: PPR repeat; Int 97.6 0.0001 2.2E-09 42.5 3.6 31 402-432 1-31 (31)
177 COG3898 Uncharacterized membra 97.6 0.071 1.5E-06 50.2 24.3 247 310-570 130-392 (531)
178 PRK10153 DNA-binding transcrip 97.5 0.0019 4.2E-08 65.8 14.4 137 431-571 332-483 (517)
179 PRK15331 chaperone protein Sic 97.5 0.00088 1.9E-08 55.2 9.7 91 478-569 43-133 (165)
180 PF04840 Vps16_C: Vps16, C-ter 97.5 0.045 9.8E-07 52.1 22.6 100 183-290 184-283 (319)
181 PRK02603 photosystem I assembl 97.5 0.0018 3.8E-08 56.1 12.3 126 403-555 37-165 (172)
182 PRK10866 outer membrane biogen 97.5 0.032 6.9E-07 51.1 20.2 170 377-568 39-239 (243)
183 PF14938 SNAP: Soluble NSF att 97.4 0.11 2.3E-06 49.1 25.0 108 403-514 157-275 (282)
184 PF01535 PPR: PPR repeat; Int 97.4 0.00014 3E-09 42.0 2.7 30 302-331 2-31 (31)
185 PF13414 TPR_11: TPR repeat; P 97.4 0.00028 6E-09 50.2 4.9 66 471-538 2-69 (69)
186 PF12895 Apc3: Anaphase-promot 97.4 0.00032 6.9E-09 52.2 5.3 80 450-532 3-83 (84)
187 PF14559 TPR_19: Tetratricopep 97.4 0.00021 4.5E-09 50.7 4.1 49 449-500 4-53 (68)
188 KOG2041 WD40 repeat protein [G 97.4 0.11 2.3E-06 52.7 23.2 242 68-327 679-950 (1189)
189 PRK15363 pathogenicity island 97.4 0.0019 4.1E-08 53.1 9.5 96 438-537 37-133 (157)
190 COG3898 Uncharacterized membra 97.4 0.065 1.4E-06 50.4 20.2 275 23-297 84-391 (531)
191 PF14938 SNAP: Soluble NSF att 97.4 0.02 4.3E-07 54.1 17.9 145 406-565 99-261 (282)
192 COG4700 Uncharacterized protei 97.3 0.0061 1.3E-07 50.8 11.8 104 467-570 84-189 (251)
193 PF05843 Suf: Suppressor of fo 97.3 0.0023 5E-08 60.1 10.5 131 437-570 2-136 (280)
194 PRK10803 tol-pal system protei 97.3 0.0027 5.8E-08 58.5 10.5 95 474-570 145-246 (263)
195 PF13431 TPR_17: Tetratricopep 97.3 0.00019 4.1E-09 42.2 1.9 33 530-562 2-34 (34)
196 PF13281 DUF4071: Domain of un 97.3 0.071 1.5E-06 51.2 20.0 163 374-539 145-337 (374)
197 CHL00033 ycf3 photosystem I as 97.2 0.0036 7.7E-08 54.0 10.7 115 438-557 37-167 (168)
198 KOG1130 Predicted G-alpha GTPa 97.2 0.0026 5.6E-08 59.7 9.5 133 437-569 196-343 (639)
199 PF10037 MRP-S27: Mitochondria 97.2 0.004 8.7E-08 60.9 11.2 120 365-485 61-186 (429)
200 PF12688 TPR_5: Tetratrico pep 97.1 0.014 2.9E-07 46.3 12.0 91 406-499 6-102 (120)
201 PF10037 MRP-S27: Mitochondria 97.1 0.0094 2E-07 58.4 13.3 124 431-554 61-186 (429)
202 PF13371 TPR_9: Tetratricopept 97.1 0.0015 3.1E-08 47.1 6.1 64 480-544 3-66 (73)
203 PF08579 RPM2: Mitochondrial r 97.1 0.0043 9.3E-08 47.2 7.9 79 304-382 29-116 (120)
204 PF06239 ECSIT: Evolutionarily 97.0 0.029 6.3E-07 48.6 12.9 118 332-464 44-167 (228)
205 PF13428 TPR_14: Tetratricopep 96.9 0.0014 2.9E-08 41.4 3.8 42 508-549 2-43 (44)
206 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.0041 8.8E-08 60.2 8.6 63 472-536 75-141 (453)
207 PRK11619 lytic murein transgly 96.9 0.74 1.6E-05 48.8 28.4 105 185-290 42-150 (644)
208 KOG1538 Uncharacterized conser 96.9 0.073 1.6E-06 53.4 17.0 76 345-429 757-845 (1081)
209 KOG2796 Uncharacterized conser 96.9 0.06 1.3E-06 47.8 14.4 137 302-440 179-323 (366)
210 PF08579 RPM2: Mitochondrial r 96.8 0.0065 1.4E-07 46.2 7.2 87 339-448 29-116 (120)
211 KOG2796 Uncharacterized conser 96.8 0.032 6.9E-07 49.4 12.2 129 441-570 182-315 (366)
212 PRK10803 tol-pal system protei 96.8 0.013 2.9E-07 54.0 10.3 99 438-541 145-251 (263)
213 PF03704 BTAD: Bacterial trans 96.7 0.038 8.3E-07 46.2 12.4 62 508-569 63-124 (146)
214 COG4235 Cytochrome c biogenesi 96.7 0.052 1.1E-06 49.6 13.4 104 433-541 153-261 (287)
215 PRK11906 transcriptional regul 96.7 0.027 5.9E-07 54.9 12.3 142 417-564 274-430 (458)
216 PF13424 TPR_12: Tetratricopep 96.7 0.0028 6.1E-08 46.3 4.5 61 508-568 6-73 (78)
217 KOG1258 mRNA processing protei 96.7 0.84 1.8E-05 46.0 22.8 384 51-445 44-484 (577)
218 KOG0543 FKBP-type peptidyl-pro 96.7 0.019 4E-07 54.5 10.5 62 509-570 259-320 (397)
219 KOG0550 Molecular chaperone (D 96.6 0.13 2.8E-06 49.0 15.6 81 181-261 54-140 (486)
220 KOG1538 Uncharacterized conser 96.6 0.089 1.9E-06 52.8 15.2 19 310-328 827-845 (1081)
221 KOG0543 FKBP-type peptidyl-pro 96.6 0.025 5.4E-07 53.7 11.0 98 472-570 257-355 (397)
222 PF13525 YfiO: Outer membrane 96.6 0.086 1.9E-06 46.9 13.9 50 513-562 147-199 (203)
223 PRK09687 putative lyase; Provi 96.3 0.93 2E-05 42.5 22.1 173 19-191 35-221 (280)
224 PRK11906 transcriptional regul 96.3 0.16 3.5E-06 49.7 14.8 83 486-569 318-400 (458)
225 KOG1130 Predicted G-alpha GTPa 96.3 0.015 3.2E-07 54.8 7.4 265 154-429 26-343 (639)
226 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.3 2.9E-05 42.9 29.1 130 437-569 398-530 (660)
227 PRK10866 outer membrane biogen 96.2 0.35 7.5E-06 44.3 15.9 57 477-533 180-238 (243)
228 KOG1585 Protein required for f 96.1 0.13 2.9E-06 45.2 11.7 145 404-565 94-251 (308)
229 PF06239 ECSIT: Evolutionarily 96.1 0.068 1.5E-06 46.4 9.8 112 391-522 35-153 (228)
230 PRK09687 putative lyase; Provi 96.0 1.4 2.9E-05 41.5 22.7 50 80-129 34-83 (280)
231 PRK15331 chaperone protein Sic 96.0 0.026 5.6E-07 46.8 6.7 90 442-535 43-133 (165)
232 PF10300 DUF3808: Protein of u 96.0 0.3 6.5E-06 49.7 15.7 163 404-569 191-375 (468)
233 COG4105 ComL DNA uptake lipopr 96.0 1.2 2.5E-05 40.1 19.7 162 410-573 43-235 (254)
234 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.044 9.6E-07 53.3 8.9 61 437-500 76-140 (453)
235 PF13525 YfiO: Outer membrane 95.9 0.15 3.3E-06 45.3 11.9 139 407-570 11-170 (203)
236 PF13512 TPR_18: Tetratricopep 95.8 0.18 4E-06 40.8 10.8 91 479-570 17-128 (142)
237 COG0457 NrfG FOG: TPR repeat [ 95.8 1.4 3E-05 40.0 23.2 196 371-571 60-266 (291)
238 PF12921 ATP13: Mitochondrial 95.8 0.079 1.7E-06 42.5 8.7 50 468-517 48-98 (126)
239 KOG4555 TPR repeat-containing 95.8 0.1 2.2E-06 40.9 8.6 90 481-571 52-145 (175)
240 PF03704 BTAD: Bacterial trans 95.8 0.019 4.1E-07 48.1 5.4 53 443-498 69-122 (146)
241 PF13424 TPR_12: Tetratricopep 95.8 0.01 2.2E-07 43.3 3.2 65 472-536 5-75 (78)
242 KOG2610 Uncharacterized conser 95.6 0.3 6.5E-06 45.1 12.3 152 413-568 115-274 (491)
243 PF13512 TPR_18: Tetratricopep 95.6 0.21 4.7E-06 40.4 10.1 111 411-541 20-133 (142)
244 PF09205 DUF1955: Domain of un 95.5 0.92 2E-05 35.9 15.1 140 412-573 13-152 (161)
245 PF12921 ATP13: Mitochondrial 95.5 0.096 2.1E-06 42.0 8.2 94 436-550 2-97 (126)
246 PF10300 DUF3808: Protein of u 95.5 0.48 1E-05 48.3 14.9 119 414-535 246-375 (468)
247 COG3118 Thioredoxin domain-con 95.4 0.65 1.4E-05 42.6 13.7 123 445-571 143-266 (304)
248 PF04184 ST7: ST7 protein; In 95.4 1 2.2E-05 44.5 15.8 17 525-541 364-380 (539)
249 COG1729 Uncharacterized protei 95.3 0.14 3E-06 46.3 9.1 95 474-570 144-244 (262)
250 KOG1258 mRNA processing protei 95.1 4.5 9.7E-05 41.1 23.0 183 370-555 297-489 (577)
251 PF07719 TPR_2: Tetratricopept 95.1 0.06 1.3E-06 31.4 4.4 32 509-540 3-34 (34)
252 COG4105 ComL DNA uptake lipopr 95.0 1.7 3.8E-05 39.1 14.9 157 380-541 44-238 (254)
253 KOG2114 Vacuolar assembly/sort 94.9 6.2 0.00013 41.8 22.6 173 53-234 335-517 (933)
254 PF00515 TPR_1: Tetratricopept 94.9 0.052 1.1E-06 31.7 3.7 32 508-539 2-33 (34)
255 KOG4234 TPR repeat-containing 94.8 0.18 3.9E-06 42.9 7.9 53 517-569 144-196 (271)
256 COG0457 NrfG FOG: TPR repeat [ 94.8 3.1 6.6E-05 37.7 22.7 199 335-539 59-268 (291)
257 PF13281 DUF4071: Domain of un 94.7 1.2 2.6E-05 43.1 14.3 72 274-345 146-227 (374)
258 KOG2610 Uncharacterized conser 94.7 0.32 6.9E-06 45.0 9.8 116 448-566 115-234 (491)
259 PRK13800 putative oxidoreducta 94.6 6.8 0.00015 44.0 21.9 251 41-295 624-878 (897)
260 KOG2280 Vacuolar assembly/sort 94.6 7 0.00015 40.9 28.1 116 27-142 443-574 (829)
261 KOG4555 TPR repeat-containing 94.5 0.3 6.5E-06 38.4 7.9 91 445-538 52-146 (175)
262 COG3118 Thioredoxin domain-con 94.5 0.91 2E-05 41.6 12.0 134 163-296 121-263 (304)
263 PF04184 ST7: ST7 protein; In 94.4 1 2.2E-05 44.5 13.0 54 408-464 175-228 (539)
264 COG1729 Uncharacterized protei 94.4 0.41 8.9E-06 43.3 9.7 96 447-542 152-250 (262)
265 PF09613 HrpB1_HrpK: Bacterial 94.2 1.4 3E-05 36.7 11.6 88 446-538 20-108 (160)
266 KOG1941 Acetylcholine receptor 94.1 0.84 1.8E-05 42.9 11.2 128 440-567 126-272 (518)
267 KOG2114 Vacuolar assembly/sort 94.0 9.8 0.00021 40.4 26.4 53 478-534 711-763 (933)
268 PF04053 Coatomer_WDAD: Coatom 94.0 1.5 3.2E-05 44.1 13.8 158 309-499 270-429 (443)
269 PRK11619 lytic murein transgly 94.0 10 0.00022 40.5 33.6 384 36-437 81-512 (644)
270 smart00299 CLH Clathrin heavy 93.9 3.2 6.9E-05 34.2 14.6 126 404-552 10-136 (140)
271 PRK15180 Vi polysaccharide bio 93.8 0.44 9.6E-06 46.3 9.2 142 448-594 301-442 (831)
272 smart00299 CLH Clathrin heavy 93.8 2.8 6.1E-05 34.5 13.4 119 58-186 13-135 (140)
273 PF04053 Coatomer_WDAD: Coatom 93.6 2 4.3E-05 43.2 14.0 154 91-261 269-425 (443)
274 KOG1585 Protein required for f 93.5 2.4 5.2E-05 37.7 12.2 144 373-530 94-250 (308)
275 COG4649 Uncharacterized protei 93.5 4.1 8.8E-05 34.2 14.4 132 402-535 60-195 (221)
276 PF13176 TPR_7: Tetratricopept 93.5 0.17 3.7E-06 30.1 3.9 26 543-568 1-26 (36)
277 KOG4648 Uncharacterized conser 93.3 0.32 6.9E-06 45.1 7.1 92 444-539 105-197 (536)
278 KOG1920 IkappaB kinase complex 93.0 15 0.00032 40.9 19.5 156 128-295 894-1052(1265)
279 PF08631 SPO22: Meiosis protei 92.8 8.6 0.00019 36.2 21.7 17 517-533 256-272 (278)
280 PF13428 TPR_14: Tetratricopep 92.8 0.23 4.9E-06 31.1 4.0 27 474-500 3-29 (44)
281 COG3629 DnrI DNA-binding trans 92.7 0.61 1.3E-05 43.0 8.1 61 509-569 155-215 (280)
282 COG4785 NlpI Lipoprotein NlpI, 92.7 6.5 0.00014 34.4 14.5 162 400-572 98-268 (297)
283 KOG0890 Protein kinase of the 92.6 16 0.00034 43.9 20.3 65 507-573 1670-1734(2382)
284 PF02259 FAT: FAT domain; Int 92.6 11 0.00024 36.9 18.7 148 400-554 145-305 (352)
285 PRK13800 putative oxidoreducta 92.4 22 0.00049 40.0 23.5 255 70-328 622-880 (897)
286 PF10602 RPN7: 26S proteasome 92.3 1.5 3.3E-05 37.8 9.8 94 473-566 37-138 (177)
287 KOG2066 Vacuolar assembly/sort 92.1 18 0.00039 38.2 20.6 148 59-207 363-536 (846)
288 KOG4642 Chaperone-dependent E3 92.0 0.48 1E-05 41.7 6.1 86 482-569 20-106 (284)
289 PF13181 TPR_8: Tetratricopept 91.9 0.29 6.3E-06 28.4 3.5 30 509-538 3-32 (34)
290 KOG0890 Protein kinase of the 91.8 37 0.00079 41.1 25.2 363 150-551 1388-1799(2382)
291 KOG1920 IkappaB kinase complex 91.7 25 0.00055 39.2 23.0 141 373-534 911-1053(1265)
292 COG3629 DnrI DNA-binding trans 91.7 0.91 2E-05 41.9 8.0 76 438-516 155-236 (280)
293 PF09205 DUF1955: Domain of un 91.6 6 0.00013 31.6 11.1 59 405-464 90-148 (161)
294 PF13176 TPR_7: Tetratricopept 91.4 0.35 7.6E-06 28.7 3.4 26 510-535 2-27 (36)
295 TIGR02561 HrpB1_HrpK type III 91.3 1.5 3.2E-05 35.8 7.8 72 484-557 22-94 (153)
296 PF09613 HrpB1_HrpK: Bacterial 91.0 1.8 3.9E-05 36.0 8.2 83 474-558 9-95 (160)
297 PF10345 Cohesin_load: Cohesin 90.9 25 0.00054 37.6 23.8 49 520-568 547-604 (608)
298 KOG3941 Intermediate in Toll s 90.9 1.2 2.7E-05 40.3 7.6 98 289-386 54-174 (406)
299 KOG4234 TPR repeat-containing 90.9 2.5 5.5E-05 36.3 9.0 100 446-549 105-210 (271)
300 COG4649 Uncharacterized protei 90.8 3.9 8.5E-05 34.3 9.8 129 437-569 60-195 (221)
301 KOG3941 Intermediate in Toll s 90.8 2.5 5.3E-05 38.5 9.4 60 389-448 53-119 (406)
302 PF02259 FAT: FAT domain; Int 90.5 9.9 0.00021 37.3 15.0 67 505-571 144-214 (352)
303 TIGR02270 conserved hypothetic 90.5 20 0.00044 35.8 22.1 228 28-261 45-275 (410)
304 KOG4648 Uncharacterized conser 90.5 0.81 1.8E-05 42.6 6.3 94 408-507 104-198 (536)
305 KOG2066 Vacuolar assembly/sort 90.3 27 0.00059 37.0 23.8 144 155-299 366-535 (846)
306 PF07719 TPR_2: Tetratricopept 90.2 0.49 1.1E-05 27.3 3.4 30 542-571 2-31 (34)
307 PF13431 TPR_17: Tetratricopep 90.2 0.2 4.4E-06 29.3 1.6 24 469-492 9-33 (34)
308 KOG1464 COP9 signalosome, subu 90.1 14 0.00031 33.4 15.2 182 311-492 38-251 (440)
309 TIGR02270 conserved hypothetic 89.9 23 0.00049 35.4 21.8 178 59-240 45-225 (410)
310 PF08631 SPO22: Meiosis protei 89.4 19 0.00041 33.9 21.0 162 403-568 86-273 (278)
311 PF13170 DUF4003: Protein of u 89.3 9.5 0.00021 36.1 12.7 62 418-480 160-225 (297)
312 PF00515 TPR_1: Tetratricopept 89.2 0.67 1.5E-05 26.8 3.4 30 542-571 2-31 (34)
313 PF07721 TPR_4: Tetratricopept 88.5 0.65 1.4E-05 25.0 2.7 24 542-565 2-25 (26)
314 PF02284 COX5A: Cytochrome c o 88.5 3.3 7.2E-05 31.2 7.1 59 490-548 28-86 (108)
315 PF11207 DUF2989: Protein of u 88.5 2.7 5.9E-05 36.4 7.7 78 482-561 117-198 (203)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 88.4 2.9 6.4E-05 31.1 6.7 62 487-548 22-83 (103)
317 PF13170 DUF4003: Protein of u 88.2 24 0.00052 33.5 15.8 148 418-567 79-243 (297)
318 KOG1464 COP9 signalosome, subu 87.8 21 0.00046 32.4 16.3 242 282-530 40-326 (440)
319 KOG1941 Acetylcholine receptor 87.8 11 0.00024 35.8 11.6 132 404-535 125-274 (518)
320 COG4785 NlpI Lipoprotein NlpI, 87.2 2.2 4.8E-05 37.2 6.3 113 445-565 74-190 (297)
321 COG2976 Uncharacterized protei 87.2 15 0.00033 31.7 11.1 114 419-538 70-190 (207)
322 PRK10941 hypothetical protein; 86.8 7 0.00015 36.3 10.0 63 509-571 183-245 (269)
323 KOG1550 Extracellular protein 86.8 8.6 0.00019 40.4 12.0 155 412-574 260-430 (552)
324 PF13374 TPR_10: Tetratricopep 86.7 1.5 3.2E-05 26.7 4.1 25 510-534 5-29 (42)
325 PF13374 TPR_10: Tetratricopep 86.0 1.6 3.4E-05 26.6 3.9 29 542-570 3-31 (42)
326 PF10602 RPN7: 26S proteasome 86.0 8.7 0.00019 33.2 9.6 95 403-499 38-140 (177)
327 TIGR02561 HrpB1_HrpK type III 85.6 19 0.00041 29.7 12.0 52 448-502 22-74 (153)
328 PF14853 Fis1_TPR_C: Fis1 C-te 85.5 5.6 0.00012 26.1 6.2 32 512-543 6-37 (53)
329 PF13181 TPR_8: Tetratricopept 85.3 1.9 4.2E-05 24.8 3.8 29 542-570 2-30 (34)
330 PF13174 TPR_6: Tetratricopept 85.3 1.2 2.7E-05 25.3 3.0 28 543-570 2-29 (33)
331 KOG1586 Protein required for f 84.8 19 0.00041 32.1 10.8 85 486-570 128-224 (288)
332 PF13174 TPR_6: Tetratricopept 84.7 1.8 4E-05 24.6 3.5 29 511-539 4-32 (33)
333 TIGR03504 FimV_Cterm FimV C-te 84.6 2.1 4.6E-05 26.7 3.8 27 545-571 3-29 (44)
334 PF02284 COX5A: Cytochrome c o 84.1 5.7 0.00012 30.0 6.3 59 419-479 28-86 (108)
335 KOG1308 Hsp70-interacting prot 84.0 0.68 1.5E-05 43.2 2.0 89 485-574 127-215 (377)
336 PF00637 Clathrin: Region in C 83.7 3 6.6E-05 34.5 5.8 55 305-359 12-66 (143)
337 PF06552 TOM20_plant: Plant sp 83.7 3.7 8.1E-05 34.8 6.0 77 488-573 51-139 (186)
338 KOG4570 Uncharacterized conser 83.2 3.9 8.4E-05 37.9 6.3 51 415-465 114-164 (418)
339 KOG2300 Uncharacterized conser 83.1 53 0.0012 32.9 18.5 298 32-329 58-474 (629)
340 COG2909 MalT ATP-dependent tra 83.1 75 0.0016 34.6 20.9 217 347-566 427-684 (894)
341 cd00923 Cyt_c_Oxidase_Va Cytoc 83.1 7.6 0.00017 29.0 6.6 61 417-479 23-83 (103)
342 smart00028 TPR Tetratricopepti 82.4 2.5 5.4E-05 23.3 3.6 26 513-538 7-32 (34)
343 COG4455 ImpE Protein of avirul 82.3 5.3 0.00011 35.0 6.5 77 438-517 3-82 (273)
344 COG2976 Uncharacterized protei 82.2 11 0.00023 32.6 8.1 86 121-206 96-189 (207)
345 COG3947 Response regulator con 81.9 13 0.00028 34.3 8.9 60 509-568 281-340 (361)
346 PRK12798 chemotaxis protein; R 81.8 56 0.0012 32.2 19.6 179 383-567 125-321 (421)
347 KOG2396 HAT (Half-A-TPR) repea 80.8 67 0.0014 32.4 27.8 241 319-569 301-558 (568)
348 KOG0276 Vesicle coat complex C 80.5 17 0.00036 37.2 10.1 147 383-566 599-746 (794)
349 KOG0276 Vesicle coat complex C 80.4 23 0.00049 36.3 10.9 126 218-365 597-722 (794)
350 PF00637 Clathrin: Region in C 80.3 1.2 2.7E-05 36.9 2.2 84 341-427 13-96 (143)
351 KOG4507 Uncharacterized conser 79.9 8.4 0.00018 39.0 7.8 102 447-552 618-721 (886)
352 PF06552 TOM20_plant: Plant sp 79.9 5 0.00011 34.1 5.4 34 523-556 51-84 (186)
353 PF04097 Nic96: Nup93/Nic96; 79.8 91 0.002 33.4 18.2 37 308-346 266-302 (613)
354 PF14561 TPR_20: Tetratricopep 79.5 5.4 0.00012 29.8 5.1 44 528-571 9-52 (90)
355 KOG4570 Uncharacterized conser 79.5 30 0.00065 32.4 10.5 103 431-535 59-163 (418)
356 PF07035 Mic1: Colon cancer-as 79.4 38 0.00082 28.8 13.5 112 142-255 26-137 (167)
357 PF14853 Fis1_TPR_C: Fis1 C-te 79.0 15 0.00032 24.1 6.4 28 543-570 3-30 (53)
358 TIGR02508 type_III_yscG type I 78.5 26 0.00057 26.5 8.3 61 377-440 46-106 (115)
359 cd08819 CARD_MDA5_2 Caspase ac 78.5 13 0.00028 27.2 6.5 60 197-257 23-85 (88)
360 PRK15180 Vi polysaccharide bio 77.9 17 0.00037 35.9 9.0 121 414-539 302-423 (831)
361 PF13929 mRNA_stabil: mRNA sta 76.8 32 0.00069 32.0 10.0 17 540-556 237-253 (292)
362 PF04097 Nic96: Nup93/Nic96; 76.0 1.2E+02 0.0025 32.6 18.2 28 437-464 325-355 (613)
363 PF07035 Mic1: Colon cancer-as 75.5 50 0.0011 28.1 12.7 121 80-202 26-146 (167)
364 PF04910 Tcf25: Transcriptiona 75.1 53 0.0012 32.3 12.0 99 471-569 39-167 (360)
365 COG2909 MalT ATP-dependent tra 74.1 1.4E+02 0.0031 32.6 20.4 56 477-532 623-684 (894)
366 KOG1550 Extracellular protein 74.1 1.2E+02 0.0027 31.9 17.6 16 416-431 343-358 (552)
367 PF04090 RNA_pol_I_TF: RNA pol 73.6 24 0.00053 30.8 8.1 91 509-599 43-134 (199)
368 smart00028 TPR Tetratricopepti 73.0 6.6 0.00014 21.4 3.5 29 542-570 2-30 (34)
369 PF09986 DUF2225: Uncharacteri 72.7 24 0.00053 31.5 8.3 63 509-571 120-195 (214)
370 KOG4077 Cytochrome c oxidase, 71.3 20 0.00044 28.3 6.3 58 490-547 67-124 (149)
371 TIGR03504 FimV_Cterm FimV C-te 71.1 6.6 0.00014 24.5 3.1 23 478-500 5-27 (44)
372 smart00386 HAT HAT (Half-A-TPR 70.9 8 0.00017 21.6 3.4 29 521-549 1-29 (33)
373 cd08819 CARD_MDA5_2 Caspase ac 70.8 12 0.00027 27.4 4.8 59 167-226 24-85 (88)
374 KOG4521 Nuclear pore complex, 70.8 1.1E+02 0.0025 34.4 13.6 122 439-564 986-1125(1480)
375 PF14432 DYW_deaminase: DYW fa 70.7 3.7 7.9E-05 32.4 2.4 25 577-605 2-26 (116)
376 PF07163 Pex26: Pex26 protein; 69.6 37 0.0008 31.3 8.5 87 408-495 90-181 (309)
377 KOG0376 Serine-threonine phosp 68.6 4.5 9.8E-05 39.9 3.0 100 443-547 11-112 (476)
378 COG1747 Uncharacterized N-term 67.7 1.5E+02 0.0032 30.2 20.0 86 376-464 72-159 (711)
379 TIGR02508 type_III_yscG type I 67.4 52 0.0011 25.0 9.6 77 129-207 20-99 (115)
380 KOG3364 Membrane protein invol 67.3 24 0.00052 28.5 6.1 71 470-541 30-105 (149)
381 PF10345 Cohesin_load: Cohesin 67.3 1.8E+02 0.004 31.2 23.9 50 447-496 372-428 (608)
382 PRK10941 hypothetical protein; 67.2 22 0.00048 33.0 7.1 67 475-543 184-251 (269)
383 KOG4279 Serine/threonine prote 67.0 1.8E+02 0.004 31.1 13.7 186 352-540 180-399 (1226)
384 PF11207 DUF2989: Protein of u 67.0 52 0.0011 28.8 8.6 42 485-526 153-197 (203)
385 KOG3807 Predicted membrane pro 66.9 43 0.00094 31.5 8.6 21 524-544 379-399 (556)
386 KOG0545 Aryl-hydrocarbon recep 66.9 1E+02 0.0022 28.0 10.7 92 479-570 185-293 (329)
387 KOG3824 Huntingtin interacting 66.3 19 0.00041 33.4 6.2 50 518-567 127-176 (472)
388 COG1747 Uncharacterized N-term 66.0 1.6E+02 0.0035 30.0 18.1 64 299-365 65-128 (711)
389 PF07575 Nucleopor_Nup85: Nup8 65.8 12 0.00026 39.5 5.8 185 403-608 374-560 (566)
390 PF11846 DUF3366: Domain of un 63.8 15 0.00033 32.2 5.3 46 491-538 130-175 (193)
391 PF12862 Apc5: Anaphase-promot 63.4 26 0.00056 26.4 5.7 53 518-570 9-70 (94)
392 KOG4507 Uncharacterized conser 62.7 49 0.0011 34.0 8.6 132 433-571 568-706 (886)
393 PF10579 Rapsyn_N: Rapsyn N-te 61.6 17 0.00037 26.1 3.9 46 519-564 18-66 (80)
394 COG0790 FOG: TPR repeat, SEL1 61.1 1.5E+02 0.0032 28.0 15.6 78 489-572 172-268 (292)
395 KOG1498 26S proteasome regulat 60.7 1.7E+02 0.0037 28.6 14.3 211 383-595 25-266 (439)
396 PF11846 DUF3366: Domain of un 60.6 19 0.00041 31.7 5.2 33 468-500 140-172 (193)
397 KOG2396 HAT (Half-A-TPR) repea 60.0 2E+02 0.0044 29.2 28.0 103 433-538 456-562 (568)
398 KOG0551 Hsp90 co-chaperone CNS 59.7 41 0.00088 31.9 7.1 93 475-567 84-179 (390)
399 COG5159 RPN6 26S proteasome re 59.5 1.5E+02 0.0033 27.6 10.3 133 307-439 10-167 (421)
400 PF13762 MNE1: Mitochondrial s 59.5 88 0.0019 25.8 8.3 49 400-448 78-127 (145)
401 PF10579 Rapsyn_N: Rapsyn N-te 59.4 25 0.00053 25.3 4.4 44 414-457 19-64 (80)
402 PF09477 Type_III_YscG: Bacter 59.3 75 0.0016 24.5 7.1 53 377-431 47-99 (116)
403 PF08311 Mad3_BUB1_I: Mad3/BUB 58.6 80 0.0017 25.4 8.0 41 525-565 81-123 (126)
404 COG4455 ImpE Protein of avirul 58.5 1.4E+02 0.0029 26.7 11.8 125 403-539 3-137 (273)
405 cd08326 CARD_CASP9 Caspase act 57.9 51 0.0011 24.2 6.1 58 198-255 21-78 (84)
406 COG3947 Response regulator con 56.5 39 0.00083 31.4 6.3 60 475-535 282-341 (361)
407 KOG3364 Membrane protein invol 56.2 1.1E+02 0.0024 24.9 7.9 67 504-570 29-100 (149)
408 KOG0376 Serine-threonine phosp 55.8 29 0.00063 34.6 5.8 105 408-519 11-117 (476)
409 COG4976 Predicted methyltransf 55.1 25 0.00055 31.3 4.7 52 519-570 7-58 (287)
410 PF04190 DUF410: Protein of un 54.9 1.8E+02 0.0039 27.0 14.1 27 369-395 89-115 (260)
411 PF06957 COPI_C: Coatomer (COP 54.5 1.6E+02 0.0035 29.4 10.7 111 411-539 214-332 (422)
412 PF07163 Pex26: Pex26 protein; 54.1 92 0.002 28.9 8.2 55 307-363 90-146 (309)
413 KOG4077 Cytochrome c oxidase, 53.9 55 0.0012 26.0 5.9 46 420-465 68-113 (149)
414 KOG2300 Uncharacterized conser 53.8 2.5E+02 0.0055 28.4 27.1 155 411-566 333-510 (629)
415 KOG0991 Replication factor C, 53.6 1.7E+02 0.0037 26.4 10.6 136 376-517 136-282 (333)
416 COG0790 FOG: TPR repeat, SEL1 52.9 2.1E+02 0.0045 27.1 14.5 117 450-572 91-222 (292)
417 KOG2063 Vacuolar assembly/sort 51.5 3.9E+02 0.0084 29.9 20.7 164 403-569 506-712 (877)
418 KOG1308 Hsp70-interacting prot 50.9 19 0.00042 34.1 3.6 115 448-567 126-241 (377)
419 PF13934 ELYS: Nuclear pore co 50.6 1.4E+02 0.0031 26.9 9.2 104 1-105 89-198 (226)
420 PF00244 14-3-3: 14-3-3 protei 50.2 2E+02 0.0043 26.3 10.1 165 407-572 7-200 (236)
421 PF08311 Mad3_BUB1_I: Mad3/BUB 50.1 1.3E+02 0.0029 24.1 9.3 44 490-533 81-125 (126)
422 PF14689 SPOB_a: Sensor_kinase 50.0 28 0.00061 23.7 3.5 27 542-568 24-50 (62)
423 KOG3824 Huntingtin interacting 49.8 27 0.00059 32.4 4.3 55 447-506 127-182 (472)
424 COG0735 Fur Fe2+/Zn2+ uptake r 49.6 77 0.0017 26.3 6.7 62 322-384 8-69 (145)
425 cd08323 CARD_APAF1 Caspase act 49.2 95 0.0021 22.9 6.3 63 196-258 17-79 (86)
426 COG4976 Predicted methyltransf 49.1 37 0.00079 30.3 4.8 54 484-539 7-61 (287)
427 KOG0292 Vesicle coat complex C 48.7 30 0.00065 37.2 5.0 97 414-537 606-702 (1202)
428 PF11663 Toxin_YhaV: Toxin wit 47.5 25 0.00054 28.3 3.3 34 309-344 104-137 (140)
429 PF07720 TPR_3: Tetratricopept 47.0 60 0.0013 19.2 4.3 17 547-563 7-23 (36)
430 COG5191 Uncharacterized conser 47.0 32 0.0007 32.1 4.3 79 470-549 105-184 (435)
431 PF10255 Paf67: RNA polymerase 47.0 42 0.00092 33.2 5.5 29 540-568 163-191 (404)
432 PF11848 DUF3368: Domain of un 46.9 75 0.0016 20.3 5.0 34 411-444 12-45 (48)
433 PF10255 Paf67: RNA polymerase 45.7 86 0.0019 31.2 7.3 28 300-327 164-191 (404)
434 cd08332 CARD_CASP2 Caspase act 45.6 98 0.0021 23.1 6.1 55 198-252 25-79 (90)
435 KOG0991 Replication factor C, 45.5 2.4E+02 0.0051 25.6 9.3 43 393-436 231-273 (333)
436 COG4259 Uncharacterized protei 45.4 1E+02 0.0022 23.3 5.8 47 493-539 58-104 (121)
437 PF08424 NRDE-2: NRDE-2, neces 45.1 3E+02 0.0064 26.6 12.6 141 417-573 47-212 (321)
438 cd00280 TRFH Telomeric Repeat 45.0 1.5E+02 0.0033 25.6 7.6 21 515-535 119-139 (200)
439 KOG2063 Vacuolar assembly/sort 45.0 4.9E+02 0.011 29.1 16.1 26 272-297 507-532 (877)
440 cd08326 CARD_CASP9 Caspase act 44.7 66 0.0014 23.6 4.9 32 159-190 44-75 (84)
441 KOG0686 COP9 signalosome, subu 44.5 3.2E+02 0.0069 27.1 10.5 57 272-328 153-215 (466)
442 COG2912 Uncharacterized conser 43.9 82 0.0018 29.1 6.4 61 511-571 185-245 (269)
443 COG1413 FOG: HEAT repeat [Ener 43.6 3.1E+02 0.0068 26.5 23.4 62 50-111 86-148 (335)
444 PF10366 Vps39_1: Vacuolar sor 42.6 56 0.0012 25.4 4.6 29 541-569 39-67 (108)
445 KOG0687 26S proteasome regulat 42.6 3.1E+02 0.0068 26.2 10.3 27 438-464 106-132 (393)
446 KOG2422 Uncharacterized conser 42.3 4.2E+02 0.0092 27.6 14.8 106 408-517 349-460 (665)
447 PF11848 DUF3368: Domain of un 41.8 57 0.0012 20.8 3.8 33 483-515 13-45 (48)
448 PF11838 ERAP1_C: ERAP1-like C 41.5 3.3E+02 0.0071 26.1 17.9 82 452-536 146-230 (324)
449 PF10366 Vps39_1: Vacuolar sor 41.0 1.7E+02 0.0037 22.7 7.9 27 403-429 41-67 (108)
450 PF04910 Tcf25: Transcriptiona 40.4 3.7E+02 0.0081 26.5 14.3 79 479-557 110-194 (360)
451 KOG4567 GTPase-activating prot 40.3 3E+02 0.0065 26.1 9.3 73 421-499 263-345 (370)
452 PF11663 Toxin_YhaV: Toxin wit 40.2 21 0.00046 28.7 1.9 32 484-517 107-138 (140)
453 PF11817 Foie-gras_1: Foie gra 39.9 1.1E+02 0.0023 28.3 6.8 56 512-567 183-244 (247)
454 PF11838 ERAP1_C: ERAP1-like C 39.6 3.5E+02 0.0076 25.9 13.9 146 417-568 146-302 (324)
455 smart00777 Mad3_BUB1_I Mad3/BU 39.2 2E+02 0.0044 23.1 7.6 39 527-565 83-123 (125)
456 COG4941 Predicted RNA polymera 38.9 3.6E+02 0.0079 25.9 11.9 118 417-539 272-397 (415)
457 PF02184 HAT: HAT (Half-A-TPR) 38.7 76 0.0016 18.3 3.4 25 522-547 2-26 (32)
458 COG4941 Predicted RNA polymera 38.2 3.2E+02 0.007 26.3 9.3 106 398-508 287-399 (415)
459 PF14689 SPOB_a: Sensor_kinase 38.2 58 0.0012 22.2 3.6 23 477-499 28-50 (62)
460 KOG1586 Protein required for f 37.9 3.1E+02 0.0068 24.9 15.7 18 447-464 165-182 (288)
461 PF13762 MNE1: Mitochondrial s 37.6 2.4E+02 0.0052 23.4 7.9 55 299-353 78-133 (145)
462 PF09477 Type_III_YscG: Bacter 36.6 2E+02 0.0044 22.3 8.6 76 66-143 20-98 (116)
463 COG1413 FOG: HEAT repeat [Ener 36.1 4.1E+02 0.0089 25.7 22.3 143 50-192 55-210 (335)
464 PRK09857 putative transposase; 35.6 1.8E+02 0.0039 27.6 7.7 65 510-574 209-273 (292)
465 KOG4567 GTPase-activating prot 34.3 4E+02 0.0086 25.4 9.1 44 320-363 263-306 (370)
466 PRK10564 maltose regulon perip 34.3 79 0.0017 29.7 4.9 40 403-442 259-298 (303)
467 PF09670 Cas_Cas02710: CRISPR- 34.2 4.2E+02 0.0092 26.3 10.4 53 411-464 141-197 (379)
468 PRK11639 zinc uptake transcrip 34.0 1.3E+02 0.0029 25.7 6.0 46 406-451 30-75 (169)
469 PF11123 DNA_Packaging_2: DNA 33.5 62 0.0014 22.7 3.0 30 67-96 12-44 (82)
470 smart00638 LPD_N Lipoprotein N 33.5 6.1E+02 0.013 27.0 15.7 59 334-397 309-367 (574)
471 KOG1498 26S proteasome regulat 33.1 4.9E+02 0.011 25.7 12.4 58 444-501 179-241 (439)
472 cd08332 CARD_CASP2 Caspase act 32.9 1.3E+02 0.0029 22.4 5.1 26 161-186 50-75 (90)
473 PF08424 NRDE-2: NRDE-2, neces 32.8 4.6E+02 0.01 25.3 14.7 82 488-570 47-131 (321)
474 PF13929 mRNA_stabil: mRNA sta 32.6 4.3E+02 0.0093 24.9 24.2 128 386-513 144-284 (292)
475 COG0735 Fur Fe2+/Zn2+ uptake r 32.5 1.7E+02 0.0036 24.3 6.2 46 405-450 24-69 (145)
476 KOG4642 Chaperone-dependent E3 32.2 4E+02 0.0086 24.4 10.3 83 448-535 22-106 (284)
477 PF12862 Apc5: Anaphase-promot 31.8 1.5E+02 0.0032 22.2 5.4 25 513-537 47-71 (94)
478 PF04190 DUF410: Protein of un 31.6 4.3E+02 0.0093 24.6 15.9 81 471-570 89-170 (260)
479 COG2256 MGS1 ATPase related to 31.5 5.4E+02 0.012 25.7 9.9 52 299-350 245-299 (436)
480 KOG4279 Serine/threonine prote 31.5 1.8E+02 0.0039 31.2 7.2 18 549-566 352-369 (1226)
481 cd07153 Fur_like Ferric uptake 31.4 95 0.0021 24.3 4.5 46 407-452 6-51 (116)
482 PF04762 IKI3: IKI3 family; I 31.4 8.1E+02 0.018 28.0 13.0 21 245-265 701-721 (928)
483 PRK09462 fur ferric uptake reg 31.2 2.4E+02 0.0052 23.4 7.1 59 325-384 7-66 (148)
484 KOG2422 Uncharacterized conser 31.1 6.4E+02 0.014 26.4 12.4 93 443-538 349-450 (665)
485 cd08323 CARD_APAF1 Caspase act 31.1 1.4E+02 0.003 22.1 4.8 32 190-221 42-73 (86)
486 KOG0292 Vesicle coat complex C 30.6 5E+02 0.011 28.8 10.2 132 377-535 650-781 (1202)
487 COG4259 Uncharacterized protei 30.4 1.8E+02 0.0039 22.1 5.1 45 525-569 55-100 (121)
488 PF14669 Asp_Glu_race_2: Putat 30.4 3.7E+02 0.0081 23.5 10.3 169 206-395 7-206 (233)
489 cd00280 TRFH Telomeric Repeat 30.3 2.2E+02 0.0049 24.6 6.4 20 445-464 120-139 (200)
490 PRK10564 maltose regulon perip 30.1 72 0.0016 30.0 3.9 38 302-339 259-296 (303)
491 cd08810 CARD_BCL10 Caspase act 29.9 2E+02 0.0044 21.1 5.4 54 198-252 21-74 (84)
492 PF04781 DUF627: Protein of un 29.5 2.7E+02 0.0058 21.8 6.2 41 525-565 62-102 (111)
493 COG5191 Uncharacterized conser 29.5 1.3E+02 0.0028 28.4 5.3 69 503-571 103-172 (435)
494 PF13646 HEAT_2: HEAT repeats; 29.4 1.9E+02 0.0042 20.8 5.7 49 19-67 12-60 (88)
495 PF15469 Sec5: Exocyst complex 28.8 3.8E+02 0.0083 23.1 8.2 18 446-463 96-113 (182)
496 PHA02537 M terminase endonucle 28.6 4.5E+02 0.0098 23.9 9.3 19 520-538 191-209 (230)
497 COG2137 OraA Uncharacterized p 27.9 3.9E+02 0.0085 23.0 11.3 79 419-499 86-165 (174)
498 KOG2034 Vacuolar sorting prote 27.6 8.9E+02 0.019 27.0 19.5 299 118-428 362-688 (911)
499 COG5159 RPN6 26S proteasome re 27.2 5.3E+02 0.011 24.2 12.4 158 410-568 12-192 (421)
500 PF11817 Foie-gras_1: Foie gra 27.1 1.3E+02 0.0028 27.8 5.1 57 477-533 183-244 (247)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.9e-88 Score=735.35 Aligned_cols=612 Identities=33% Similarity=0.581 Sum_probs=593.3
Q ss_pred CCCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCC----CCCcchHHHHHHHHHcCCChhhHHHHHhc
Q 006955 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMP----ERDMFTYNTVIAGLMQSDNVQGAKEVFDG 77 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 77 (624)
|.|+++.|.++|++|++||..+|+.++.+|++.|++++|+.+|++|. .||..+|+.++.+|++.+++..+.+++..
T Consensus 133 ~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 133 RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 68999999999999999999999999999999999999999999996 69999999999999999999999998888
Q ss_pred CC----CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc----CChhHHH
Q 006955 78 ME----VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA----RDVASWT 149 (624)
Q Consensus 78 ~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 149 (624)
|. .||..+|++|+.+|++.|+++.|.++|++|.+||+.+|+.++.+|++.|++++|.++|++|.+ ||..+|+
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 76 789999999999999999999999999999999999999999999999999999999999974 8999999
Q ss_pred HHHHHHHhCCChHHHHHHhccCC----CCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHH
Q 006955 150 IMVNGLVREGRIVEARKLFDKMP----AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDA 225 (624)
Q Consensus 150 ~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (624)
.++.+|++.|+.+.|.+++..+. .+|..+|+.|+.+|++.|++++|.++|++|..+|..+|+.++.+|.+.|++++
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~ 372 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDK 372 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHH
Confidence 99999999999999999999887 57999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCC----CCcchHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC
Q 006955 226 AISYFKQMPE----TCEKTWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT 297 (624)
Q Consensus 226 A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 297 (624)
|+++|++|.+ ||..||+.++.+|++.|+++.+.++++.+. .++..++++|+++|+++|++++|.++|++|.+
T Consensus 373 A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 9999999964 999999999999999999999999999988 77888999999999999999999999999999
Q ss_pred CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHH
Q 006955 298 RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMI 377 (624)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 377 (624)
+|+.+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+
T Consensus 453 ~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi 531 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531 (857)
T ss_pred CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHH
Confidence 9999999999999999999999999999986 599999999999999999999999999999999999999999999999
Q ss_pred HHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHH
Q 006955 378 TMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRY 457 (624)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 457 (624)
++|+++|++++|.++|+.+ .+|..+||++|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.+
T Consensus 532 ~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 9999999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 458 YFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
+|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|. ++||..+|++|+.+|..+|+.+.++...+++.++.
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 999999778999999999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHHHHHHh
Q 006955 538 PNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIERE 617 (624)
Q Consensus 538 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (624)
|+++..|..|+++|...|+|++|.++.+.|++.|++++||+|||++++.+|.|.++|.+||+..+||..+.++..+++..
T Consensus 688 p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 767 (857)
T PLN03077 688 PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKAS 767 (857)
T ss_pred CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred h
Q 006955 618 I 618 (624)
Q Consensus 618 ~ 618 (624)
+
T Consensus 768 g 768 (857)
T PLN03077 768 G 768 (857)
T ss_pred C
Confidence 4
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.2e-73 Score=602.30 Aligned_cols=508 Identities=29% Similarity=0.538 Sum_probs=466.1
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHhccCCC-----CCcccHHHHHHHHHcCCChHHHHHHHHhccc----CChhHHHHH
Q 006955 81 RDVVTWNSMISGYVCNGLIDEALRVFHGMPL-----KDVVSWNLVIGALVNCQRMDLAESYFKEMGA----RDVASWTIM 151 (624)
Q Consensus 81 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l 151 (624)
++...++.++..+.+.|++++|+++|+.|.. ||..+|+.++.+|.+.++++.+.+++..|.+ ||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3555777777777777777777777777752 5667777777777777777777777777753 577777777
Q ss_pred HHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhh
Q 006955 152 VNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFK 231 (624)
Q Consensus 152 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 231 (624)
+.+|++.|+++.|.++|++|.+||..+|+.++.+|++.|++++|.++|++|.+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~------------------------ 220 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS------------------------ 220 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC------------------------
Confidence 77777777777777777777777777777777777777777777777777766554
Q ss_pred hCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhh
Q 006955 232 QMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMI 307 (624)
Q Consensus 232 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 307 (624)
.|+..+|..++.+|.+.|..+.+.+++..+. .+|..++++|+++|+++|++++|.++|+.|..+|+.+||.++
T Consensus 221 ---~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li 297 (697)
T PLN03081 221 ---DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML 297 (697)
T ss_pred ---CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHH
Confidence 6888999999999999999999999887776 788999999999999999999999999999999999999999
Q ss_pred hHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHH
Q 006955 308 FGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387 (624)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (624)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|++|+..++++|+++|++.|+++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcC
Q 006955 388 SALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF 467 (624)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 467 (624)
+|.++|++|..||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+|
T Consensus 378 ~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHH
Q 006955 468 LQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLIL 547 (624)
Q Consensus 468 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 547 (624)
+.|+..+|+.++++|++.|++++|.+++++|. +.|+..+|++|+.+|..+|+++.|..+++++.++.|.+..+|..|
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 99999999999999999999999999999986 799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHHHHHHhh
Q 006955 548 TEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIEREI 618 (624)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (624)
+++|.+.|++++|.+++++|++.|+++.||++||++.+.+|.|.++|.+||+..++|..+.++..++...+
T Consensus 535 ~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 535 LNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG 605 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988754
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.4e-71 Score=599.78 Aligned_cols=546 Identities=26% Similarity=0.377 Sum_probs=495.0
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCC----CCCcchHHHHHHHHHcCCChhhHHHHHhcCC----CCCchhHHHHH
Q 006955 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMP----ERDMFTYNTVIAGLMQSDNVQGAKEVFDGME----VRDVVTWNSMI 90 (624)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~ 90 (624)
++..+++.++.+|++.|++++|..+|+.|. .|+..+|..++.+|.+.+.++.+..++..+. .++..++|+|+
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 566789999999999999999999999997 4788999999999999999999999998765 57889999999
Q ss_pred HHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcc----cCChhHHHHHHHHHHhCCChHHHHH
Q 006955 91 SGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMG----ARDVASWTIMVNGLVREGRIVEARK 166 (624)
Q Consensus 91 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~ 166 (624)
.+|++.|+.+.|.++|++|.+||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|+..+++..+.+
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 999999999999999999999999999999999999999999999999996 4899999999999999999999999
Q ss_pred HhccCC----CCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCC----CCc
Q 006955 167 LFDKMP----AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE----TCE 238 (624)
Q Consensus 167 ~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~ 238 (624)
++..+. .+|+.+++.|+.+|++.|++++|.++|++|..+|..+|+.++.+|.+.|++++|+++|.+|.+ ||.
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 988886 579999999999999999999999999999999999999999999999999999999999974 999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCC
Q 006955 239 KTWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEND 314 (624)
Q Consensus 239 ~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (624)
.||+.++.+|.+.|+.+.+.+++..+. .||..+|+.++.+|++.|++++|.++|++|..+|+.+||.++.+|++.|
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCC
Confidence 999999999999999999999999988 7899999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhc
Q 006955 315 LGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFS 394 (624)
Q Consensus 315 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 394 (624)
++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|++.|++++|.++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCC-----
Q 006955 395 SVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQ----- 469 (624)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----- 469 (624)
+|..+|+.+||++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+. |+.
T Consensus 449 ~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~ 526 (857)
T PLN03077 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFL 526 (857)
T ss_pred hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCcccee
Confidence 99999999999999999999999999999999986 59999999999998888888887777777776653 443
Q ss_pred -------------------------CCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChH
Q 006955 470 -------------------------PRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIK 524 (624)
Q Consensus 470 -------------------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 524 (624)
||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+++
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH
Confidence 4566666777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHc---cCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 525 VGEIAGERVME---LEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 525 ~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
+|.++|+.|.+ +.| +..+|..++.+|.+.|++++|.+++++|
T Consensus 607 ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 607 QGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 77777777763 234 5567777777777777777777777766
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-62 Score=524.69 Aligned_cols=498 Identities=17% Similarity=0.234 Sum_probs=384.1
Q ss_pred CCcchHHHHHHHHHcCCChhhHHHHHhcCCC-----CCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHH
Q 006955 50 RDMFTYNTVIAGLMQSDNVQGAKEVFDGMEV-----RDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGAL 124 (624)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 124 (624)
++...|..+...+++.|++++|.++|+.|.. ++..+++.++..|.+.|..++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4455566666666666666666666666652 33445555666666666666666666666666666666666666
Q ss_pred HcCCChHHHHHHHHhccc----CChhHHHHHHHHHHhCCChHHHHHHhccCC----CCChhHHHHHHHHHHHcCChhHHH
Q 006955 125 VNCQRMDLAESYFKEMGA----RDVASWTIMVNGLVREGRIVEARKLFDKMP----AKDVQAWNLMIAGYLDNGCVGVAE 196 (624)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 196 (624)
++.|+++.|.+++++|.+ ||..+|+.||.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 666666666666666653 466666666666666666666666666665 356666666666666666666666
Q ss_pred HHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC------CCCcc
Q 006955 197 DLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYP------YSNIA 270 (624)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~~~ 270 (624)
++|++|.+.+. .||..+|+.++.+|++.|++++|.++|++|. .||..
T Consensus 528 ~lf~~M~~~Gv---------------------------~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 528 GAYGIMRSKNV---------------------------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred HHHHHHHHcCC---------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 66666654332 4666677777777777777777777776663 56777
Q ss_pred hhhHHHHHHHhcCChHHHHHHHhhcCC----CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHc
Q 006955 271 SWTNVIVGYFEMGEVGSAIKVFELMTT----RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICS 346 (624)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 346 (624)
+|++++.+|++.|++++|.++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 788888888888888888888888864 4567888888888888888888888888888888888888888888888
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC----CCCchhHHHHHHHHHHcCChHHHHH
Q 006955 347 DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP----IHDIISWNSIICGLAYHGYAEKALE 422 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~ 422 (624)
+.|+++.|.+++..|.+.|++|+..+|+++|.+|++.|++++|.++|++|. .||..+||.||.+|++.|++++|.+
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888888888888888888888888888888888888888874 6788888888888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----c-------------
Q 006955 423 LFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----F------------- 485 (624)
Q Consensus 423 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~------------- 485 (624)
+|++|...|+.||..||+.++.+|++.|++++|.+++++|.+. |+.||..+|+.++..|.+ +
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 8888888888888888888888888888888888888888875 688888888888765431 1
Q ss_pred ------CChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCCCchHHHHHHHHHhcCChH
Q 006955 486 ------GLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME-LEPNNSGVYLILTEMYLSCGRRE 558 (624)
Q Consensus 486 ------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~ 558 (624)
+..++|..+|++|.+.|+.||..+|+.++.++...+....+..+++.+.. ..+++..+|..|+.++.+. .+
T Consensus 820 ~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~ 897 (1060)
T PLN03218 820 RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DP 897 (1060)
T ss_pred ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hH
Confidence 23467999999999999999999999999877888999999888887653 3455788999999988332 36
Q ss_pred HHHHHHHHHHHCCCccCCc
Q 006955 559 DAKRIFAQMKENGVKKEPG 577 (624)
Q Consensus 559 ~A~~~~~~m~~~~~~~~~~ 577 (624)
+|..++++|...|+.++..
T Consensus 898 ~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 898 RAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHcCCCCCcc
Confidence 8999999999999987764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-62 Score=521.74 Aligned_cols=496 Identities=17% Similarity=0.234 Sum_probs=426.0
Q ss_pred CCCChhHHHHHHhhCCCCC-----cchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHh
Q 006955 2 RNARIQEAQNLFDKMPQRD-----TVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFD 76 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 76 (624)
|.|++++|.++|++|.+++ ...++.++.+|.+.|.+++|+.+|..|..||..+|+.++.+|++.|+++.|.++|+
T Consensus 382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 5789999999999998644 44566777888999999999999999999999999999999999999999999999
Q ss_pred cCC----CCCchhHHHHHHHHHhCCChhHHHHHhccCC----CCCcccHHHHHHHHHcCCChHHHHHHHHhccc----CC
Q 006955 77 GME----VRDVVTWNSMISGYVCNGLIDEALRVFHGMP----LKDVVSWNLVIGALVNCQRMDLAESYFKEMGA----RD 144 (624)
Q Consensus 77 ~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~ 144 (624)
.|. .||..+|+.||.+|++.|+.+.|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+ ||
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 887 6899999999999999999999999999997 38999999999999999999999999999963 78
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHhccCC------CCChhHHHHHHHHHHHcCChhHHHHHHHHcccCC----cccHHHHH
Q 006955 145 VASWTIMVNGLVREGRIVEARKLFDKMP------AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRD----LTSWKQLI 214 (624)
Q Consensus 145 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~ 214 (624)
..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|+.|.+.+ ..+|+.+|
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 8999999999999999999999999884 4688899999999999999999999999998754 46899999
Q ss_pred HHHHcCCCHHHHHHHhhhCCC----CCcchHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChH
Q 006955 215 NGLVNSRRIDAAISYFKQMPE----TCEKTWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVG 286 (624)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 286 (624)
.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++++.|. .++..+|+.+|.+|++.|+++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999975 788899999999999999999999999988 688889999999999999999
Q ss_pred HHHHHHhhcC----CCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006955 287 SAIKVFELMT----TRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAI 362 (624)
Q Consensus 287 ~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 362 (624)
+|.++|++|. .||..+||.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++.|.++|..|.
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999884 578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 006955 363 KIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGV 442 (624)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 442 (624)
+.|+.|+..+|++++.++.+ +++++..+.+.+.. |+. .......+..+.|+.+|++|.+.|+.||..||+.+
T Consensus 782 k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 782 EDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVS-----FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh-----hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 99999999999998876432 34444444332221 100 00111112335699999999999999999999999
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT 508 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (624)
+.++...+..+.+..+++.+... +..|+..+|+++++++.+. .++|..++++|...|+.|+..
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 98888889999999999887754 4677899999999998433 478999999999999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.9e-60 Score=502.35 Aligned_cols=487 Identities=20% Similarity=0.288 Sum_probs=445.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCC-----CCCcchHHHHHHHHHcCCChhhHHHHHhcCC----CCCchhHHHH
Q 006955 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMP-----ERDMFTYNTVIAGLMQSDNVQGAKEVFDGME----VRDVVTWNSM 89 (624)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l 89 (624)
++..+|+.++.+|.+.|++++|+.+|+.|. .||..+|+.++.+|++.++++.+..++..|. .||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455689999999999999999999999996 4688999999999999999999999999886 7899999999
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc----CChhHHHHHHHHHHhCCChHHHH
Q 006955 90 ISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA----RDVASWTIMVNGLVREGRIVEAR 165 (624)
Q Consensus 90 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~ 165 (624)
+.+|++.|+++.|.++|++|.+||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+++..|+.+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999964 68899999999999999999999
Q ss_pred HHhccCC----CCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCC----CCC
Q 006955 166 KLFDKMP----AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMP----ETC 237 (624)
Q Consensus 166 ~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~ 237 (624)
+++..+. .+|..+|+.|+.+|++.|++++|.++|++|.++|..+|+.++.+|.+.|++++|+++|++|. .||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9987775 56899999999999999999999999999999999999999999999999999999999995 489
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcC
Q 006955 238 EKTWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEN 313 (624)
Q Consensus 238 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (624)
..||+.++.+|++.|++++|.+++..+. ++|..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|++.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 9999999999999999999999999988 889999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-hCCCCCcchhHHHHHHhHhhCCHHHHHHH
Q 006955 314 DLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK-IARNQFTTVSNAMITMYARCGNIQSALLE 392 (624)
Q Consensus 314 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (624)
|+.++|+++|++|.+.|+.||..||+.++.+|++.|.++++.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 69999999999999999999999999999
Q ss_pred hccCC-CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC
Q 006955 393 FSSVP-IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP 470 (624)
Q Consensus 393 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 470 (624)
++++. .|+..+|++++.+|..+|+++.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+. |+..
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99997 78999999999999999999999999999975 5665 569999999999999999999999999986 5543
Q ss_pred -CcchHHHHH---HHhh----cc----CChHHHHHHHHHcccCCCCcCHH
Q 006955 471 -RSAHYTCVV---DLLG----RF----GLIDEAMNLLNEIRADGIEVSPT 508 (624)
Q Consensus 471 -~~~~~~~l~---~~~~----~~----g~~~~A~~~~~~~~~~g~~p~~~ 508 (624)
...+|..+. ..+. .. .-++...++..+|.+.|..|+..
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 222221110 0000 00 11345567788889999999854
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-36 Score=340.93 Aligned_cols=563 Identities=12% Similarity=0.074 Sum_probs=381.1
Q ss_pred CCCChhHHHHHHhhCCCCCcc---hHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhhHHHHH
Q 006955 2 RNARIQEAQNLFDKMPQRDTV---TWNVMIRGYFKNGFLDNAMCLFNQMP---ERDMFTYNTVIAGLMQSDNVQGAKEVF 75 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 75 (624)
+.|++++|...|+++.+.++. .+..+...+...|++++|...|+++. +.+..++..+...+.+.|++++|...+
T Consensus 273 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (899)
T TIGR02917 273 QKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL 352 (899)
T ss_pred HhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 457788888888777663332 33344556677788888888887766 234456666777777788888888877
Q ss_pred hcCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHhcccC---Chh
Q 006955 76 DGME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGALVNCQRMDLAESYFKEMGAR---DVA 146 (624)
Q Consensus 76 ~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 146 (624)
+.+. +.+..++..+...+.+.|++++|.+.|+++.+ | +...+..+...+...|++++|...++.+.+. ...
T Consensus 353 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 432 (899)
T TIGR02917 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchh
Confidence 7665 34556777777778888888888888877664 3 3345666667777777777777777777642 234
Q ss_pred HHHHHHHHHHhCCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcC
Q 006955 147 SWTIMVNGLVREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNS 220 (624)
Q Consensus 147 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 220 (624)
....++..+.+.|++++|.++++.+.. .++.++..++..+...|++++|.+.|+++.+. +...+..+...+...
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 455566677777777777777777652 35567777777777777777777777776543 233566666777777
Q ss_pred CCHHHHHHHhhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhh
Q 006955 221 RRIDAAISYFKQMPE---TCEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFEL 294 (624)
Q Consensus 221 ~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (624)
|++++|.+.++.+.+ .+..++..+...+.+.|+.++|...++++. +.+...+..++..|.+.|++++|..+++.
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777777654 234466666677777777777777777665 44455566677777777777777777776
Q ss_pred cCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcc
Q 006955 295 MTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT 371 (624)
Q Consensus 295 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (624)
+.. .+...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|+++.|..+++.+.+.. +.+..
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 670 (899)
T TIGR02917 593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTE 670 (899)
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHH
Confidence 653 245567777777777777777777777776542 3344556666667777777777777777766543 33455
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
.+..++..+...|++++|..+++.+. +++...+..+...+...|++++|...++++.+. .|+..++..+..++..
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHH
Confidence 66667777777777777777776665 334556666667777777777777777777663 4555566666667777
Q ss_pred cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 528 (624)
.|++++|.+.++++.+. .+.++..+..+...|...|++++|.+.|+++.+.. ++++.++..+...+...|+ .+|..
T Consensus 749 ~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 77777777777776663 22356666677777777777777777777776643 4456667777777777777 66777
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006955 529 AGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 529 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 572 (624)
.++++.+..|.++..+..++.+|...|++++|.++++++.+.+.
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 825 YAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 77777777777777777777777777777777777777766553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5e-36 Score=335.63 Aligned_cols=559 Identities=11% Similarity=0.083 Sum_probs=339.5
Q ss_pred CCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCChhhHHHHHh
Q 006955 3 NARIQEAQNLFDKMPQ---RDTVTWNVMIRGYFKNGFLDNAMCLFNQMPE---RDMFTYNTVIAGLMQSDNVQGAKEVFD 76 (624)
Q Consensus 3 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 76 (624)
.|++++|...|+++.+ .++..+..+...+.+.|++++|...++.+.+ .+...+..+...+.+.|++++|..+|+
T Consensus 308 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 387 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLA 387 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4666666666666554 2334455555666666666666666666652 234556666666666666666666666
Q ss_pred cCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHhccc---CChhH
Q 006955 77 GME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGALVNCQRMDLAESYFKEMGA---RDVAS 147 (624)
Q Consensus 77 ~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~ 147 (624)
++. +.+...+..+...+...|++++|.+.++.+.+ | +......++..+.+.|++++|..+++.+.+ .++.+
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 467 (899)
T TIGR02917 388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 554 23445566666666666666666666666553 2 223444555566666666666666666654 24455
Q ss_pred HHHHHHHHHhCCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCC
Q 006955 148 WTIMVNGLVREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSR 221 (624)
Q Consensus 148 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 221 (624)
+..+...+...|++++|.+.|+++.+ .+...+..++..+...|++++|.+.++++.+. +..++..+...+...|
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Confidence 66666666666666666666666542 24455566666666666666666666666542 3335556666666666
Q ss_pred CHHHHHHHhhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhc
Q 006955 222 RIDAAISYFKQMPE---TCEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELM 295 (624)
Q Consensus 222 ~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 295 (624)
+.++|..+++++.+ .+...+..+...+...|++++|..+++.+. +.+..+|..+..+|...|++++|...|+.+
T Consensus 548 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666543 233345556666666666666666666665 444556666666666666666666666665
Q ss_pred CC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcch
Q 006955 296 TT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTV 372 (624)
Q Consensus 296 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 372 (624)
.+ .+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.. +.+...
T Consensus 628 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 705 (899)
T TIGR02917 628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALG 705 (899)
T ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHH
Confidence 42 234455666666666666666666666665542 2334556666666666666666666666666554 334455
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCC--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVP--IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAG 450 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 450 (624)
+..+...+...|++++|...|+++. .|+..++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 5556666666666666666666654 3444555556666666666666666666666532 334445556666666666
Q ss_pred hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 451 LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
++++|..+|+++.+. .++++..++.++..+...|+ .+|+.+++++.+.. +.++.++..+..++...|++++|...+
T Consensus 785 ~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 785 DYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666653 12355666666666666666 66666666665531 223455556666666666666666666
Q ss_pred HHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 531 ERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 531 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
+++++..|.++.++..++.+|...|++++|.+++++|+
T Consensus 861 ~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 861 RKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=3.1e-27 Score=264.37 Aligned_cols=557 Identities=12% Similarity=0.049 Sum_probs=402.2
Q ss_pred CCCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchH-----------------HHHH
Q 006955 2 RNARIQEAQNLFDKMPQ---RDTVTWNVMIRGYFKNGFLDNAMCLFNQMPE--RDMFTY-----------------NTVI 59 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~l~ 59 (624)
..++.+.|.+.++++.. .|+.++..++..+.+.|+.++|.+.+++..+ |+...+ ..+.
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 35778888888888775 3556777777788888888888888888873 332221 2334
Q ss_pred HHHHcCCChhhHHHHHhcCCC---CCchh-HHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCChHH
Q 006955 60 AGLMQSDNVQGAKEVFDGMEV---RDVVT-WNSMISGYVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGALVNCQRMDL 132 (624)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~~~~---~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 132 (624)
..+.+.|++++|+..|+.+.. |+... ...+.......|+.++|++.++++.+ | ++..+..+...+...|+.++
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~e 199 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDE 199 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHH
Confidence 457778888888888887762 22211 11111122235788888888888875 4 34456777777778888888
Q ss_pred HHHHHHhcccCCh-----------------------hHH----------------------------------HHHHHHH
Q 006955 133 AESYFKEMGARDV-----------------------ASW----------------------------------TIMVNGL 155 (624)
Q Consensus 133 a~~~~~~~~~~~~-----------------------~~~----------------------------------~~l~~~~ 155 (624)
|...++++.+... ..+ ......+
T Consensus 200 Al~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~ 279 (1157)
T PRK11447 200 GFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAA 279 (1157)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 8888877642100 000 0112345
Q ss_pred HhCCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcc-----cHH------------HHHH
Q 006955 156 VREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLT-----SWK------------QLIN 215 (624)
Q Consensus 156 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~------------~l~~ 215 (624)
...|++++|+..|++..+ .+..++..+...+.+.|++++|+..|++..+.++. .+. ....
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 667888888888877763 36678888888888888888888888888763321 111 1234
Q ss_pred HHHcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHH
Q 006955 216 GLVNSRRIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAI 289 (624)
Q Consensus 216 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 289 (624)
.+.+.|++++|++.|++..+ | +...+..+...+...|++++|++.|+++. +.+...+..+...|. .++.++|.
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHH
Confidence 56778888888888888775 3 34456667788888888888888888877 444555666666664 45678888
Q ss_pred HHHhhcCCCC------------ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-HHHHHHHHHHHcCCCCcHHHHH
Q 006955 290 KVFELMTTRD------------VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-NATFTSVLTICSDLPTLDLGRQ 356 (624)
Q Consensus 290 ~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 356 (624)
.+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|..
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8887665321 123445566778899999999999998875 454 4566778888999999999999
Q ss_pred HHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC----Cc---------hhHHHHHHHHHHcCChHHHHHH
Q 006955 357 IHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH----DI---------ISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
.++.+.+.. +.+......+...+...|+.++|+..++.+... +. ..+..+...+...|+.++|..+
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 999988754 334444444556677889999999999987632 11 1123345678889999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCC
Q 006955 424 FERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG 502 (624)
Q Consensus 424 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (624)
++. .+++...+..+...+.+.|+.++|+..++++.+. .| ++..+..++..|...|++++|++.++...+
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~-- 665 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA-- 665 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--
Confidence 872 3445567777888999999999999999999984 46 788899999999999999999999998876
Q ss_pred CCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc------hHHHHHHHHHhcCChHHHHHHHHHHHH-CCC
Q 006955 503 IEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG------VYLILTEMYLSCGRREDAKRIFAQMKE-NGV 572 (624)
Q Consensus 503 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~ 572 (624)
..| ++..+..+..++...|++++|..+++++++..|.++. .+..++.++...|++++|...+++... .|+
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 344 4667777888899999999999999999998765543 567789999999999999999998853 344
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.1e-25 Score=249.73 Aligned_cols=538 Identities=10% Similarity=0.037 Sum_probs=384.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhhHHHHHhcCC--CCCc-hh------------
Q 006955 24 WNVMIRGYFKNGFLDNAMCLFNQMP---ERDMFTYNTVIAGLMQSDNVQGAKEVFDGME--VRDV-VT------------ 85 (624)
Q Consensus 24 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~-~~------------ 85 (624)
.-..++.+-..++.+.|.+.++++. ..++.++..++..+.+.|+.++|...++++. .|+. ..
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 3334566778999999999999987 3467888889999999999999999999886 3332 22
Q ss_pred ----HHHHHHHHHhCCChhHHHHHhccCCC--CCcccHH--HHHHHHHcCCChHHHHHHHHhcccC---ChhHHHHHHHH
Q 006955 86 ----WNSMISGYVCNGLIDEALRVFHGMPL--KDVVSWN--LVIGALVNCQRMDLAESYFKEMGAR---DVASWTIMVNG 154 (624)
Q Consensus 86 ----~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~ 154 (624)
...+...+...|++++|++.|+...+ |+..... .........|+.++|...++++.+. ++..+..+...
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 23345578899999999999999986 3322211 1122223469999999999999873 55678888899
Q ss_pred HHhCCChHHHHHHhccCCCCCh------h-----------------HHH-------------------------------
Q 006955 155 LVREGRIVEARKLFDKMPAKDV------Q-----------------AWN------------------------------- 180 (624)
Q Consensus 155 ~~~~g~~~~a~~~~~~~~~~~~------~-----------------~~~------------------------------- 180 (624)
+...|+.++|++.++++.+... . .+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999987642110 0 000
Q ss_pred ---HHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCC--CCcc---hH--------
Q 006955 181 ---LMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPE--TCEK---TW-------- 241 (624)
Q Consensus 181 ---~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~---~~-------- 241 (624)
.....+...|++++|+..|++..+. +...+..+..++.+.|++++|+..|++..+ |+.. .+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 1133455667888888888777653 344677777778888888888888777664 3221 11
Q ss_pred ----HHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCC---CceehhhhhhHhh
Q 006955 242 ----NSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTR---DVTVWNVMIFGLG 311 (624)
Q Consensus 242 ----~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 311 (624)
......+.+.|++++|...++++. +.+...+..+...+...|++++|++.|+++.+. +...+..+...+.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 112345567788888888877777 445556666777788888888888888777642 3334445555553
Q ss_pred cCCCchHHHHHHHHhHHcCCC--------CCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh
Q 006955 312 ENDLGEEGLKFFVQMKESGPS--------PDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC 383 (624)
Q Consensus 312 ~~~~~~~a~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (624)
.++.++|+.+++.+...... .....+..+...+...|++++|...++++.+.. +.++.++..+...|.+.
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34667777777655332100 001123345556677888888888888887764 33455666788888888
Q ss_pred CCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh---------hHHHHHHHhcccCh
Q 006955 384 GNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI---------TFVGVLSACSYAGL 451 (624)
Q Consensus 384 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~g~ 451 (624)
|++++|...++++. +.++..+..+...+...+++++|+..++.+......++.. .+......+...|+
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 89998888888764 3344555555556677888888888888765432222221 12234556778899
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 452 VDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
.++|..+++. .++++..+..+...+.+.|++++|++.|++..+. .| ++..+..++..+...|++++|+..+
T Consensus 589 ~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 589 EAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999988772 2346677788999999999999999999999874 45 5788999999999999999999999
Q ss_pred HHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 531 ERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 531 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+++.+..|.++..+..++.++...|++++|.++++++....
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999987764
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1e-24 Score=232.78 Aligned_cols=552 Identities=11% Similarity=0.003 Sum_probs=413.6
Q ss_pred CCChhHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHcCCChhhHHHHHhc
Q 006955 3 NARIQEAQNLFDKMPQ--R-DTVTWNVMIRGYFKNGFLDNAMCLFNQMPE--RDMFTYNTVIAGLMQSDNVQGAKEVFDG 77 (624)
Q Consensus 3 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 77 (624)
.|++++|...|+++.+ | ++.++..|.+.|.+.|+.++|+..+++... |+...|..++..+ +++++|..++++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 5999999999999987 3 345778888999999999999999999984 4434444434333 888999999999
Q ss_pred CC---CCCchhHHHHHHH--------HHhCCChhHHHHHhccCCCCC--cccHHHH-HHHHHcCCChHHHHHHHHhcccC
Q 006955 78 ME---VRDVVTWNSMISG--------YVCNGLIDEALRVFHGMPLKD--VVSWNLV-IGALVNCQRMDLAESYFKEMGAR 143 (624)
Q Consensus 78 ~~---~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~--~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~ 143 (624)
+. +.+..++..+... |.+.++..++++ .+...|+ +.+.... .+.|.+.|+++.|+.+++++.+.
T Consensus 134 l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 134 LLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 87 4456777777776 777777777776 3344454 4434444 88999999999999999999874
Q ss_pred ---ChhHHHHHHHHHHh-CCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccC--------------
Q 006955 144 ---DVASWTIMVNGLVR-EGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR-------------- 205 (624)
Q Consensus 144 ---~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------- 205 (624)
+..-...|..+|.. .++ +.+..+++...+.++..+..++..|.+.|+.++|.+.++++..-
T Consensus 212 ~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l 290 (987)
T PRK09782 212 NTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL 290 (987)
T ss_pred CCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH
Confidence 44446667777877 466 88888887655678999999999999999999999999998641
Q ss_pred -----C----------------cccHHHHHHHHHcCCCHHHHHHHhhhCCC-----------------------------
Q 006955 206 -----D----------------LTSWKQLINGLVNSRRIDAAISYFKQMPE----------------------------- 235 (624)
Q Consensus 206 -----~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------------------- 235 (624)
+ ..+.-.++..+.+.++++.+.++...-..
T Consensus 291 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~ 370 (987)
T PRK09782 291 SKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQ 370 (987)
T ss_pred HhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHh
Confidence 0 00123346677777887777666432110
Q ss_pred --C-CcchHHHHHHHHHhcCChHHHHHHHhhcCC--CC----cchhhHHHHHHHhcCC---hHHHHHHHh----------
Q 006955 236 --T-CEKTWNSIISVLIRNGLVKEAHSYLEKYPY--SN----IASWTNVIVGYFEMGE---VGSAIKVFE---------- 293 (624)
Q Consensus 236 --~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~---~~~A~~~~~---------- 293 (624)
| +......+.-...+.|+.++|..+++...+ .+ ......++..|.+.+. ..++..+-.
T Consensus 371 ~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 450 (987)
T PRK09782 371 QEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW 450 (987)
T ss_pred cCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH
Confidence 1 112222333456788999999999999883 21 2234467888888776 333333311
Q ss_pred ---------------hcCC---C--CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHH
Q 006955 294 ---------------LMTT---R--DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDL 353 (624)
Q Consensus 294 ---------------~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 353 (624)
.... + +...|..+..++.. +++++|+..+.+.... .|+......+..++...|+++.
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHH
Confidence 1111 1 33456666666665 7888999988877665 5776655455556678999999
Q ss_pred HHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHH---HHHHHHHcCChHHHHHHHHHHHHC
Q 006955 354 GRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNS---IICGLAYHGYAEKALELFERMRLT 430 (624)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~ 430 (624)
|...++.+... +|+......+..++.+.|+.++|...+++....++...+. +.......|++++|+..+++..+
T Consensus 528 Ai~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~- 604 (987)
T PRK09782 528 ALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN- 604 (987)
T ss_pred HHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-
Confidence 99999987554 3444445667788899999999999998877433333333 33344455999999999999988
Q ss_pred CCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHH
Q 006955 431 DFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPT 508 (624)
Q Consensus 431 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~ 508 (624)
..|+...+..+..++.+.|+.++|...+++..+ +.| +...++.+..++...|++++|++.+++..+ ..| ++.
T Consensus 605 -l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~ 678 (987)
T PRK09782 605 -IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPA 678 (987)
T ss_pred -hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH
Confidence 567778888888999999999999999999987 456 677888899999999999999999999887 455 577
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 572 (624)
.+..+..++...|++++|+..+++++++.|++..+....++......+++.|.+-+++....++
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 8899999999999999999999999999999999999999999999999999998887766554
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=9.4e-23 Score=217.85 Aligned_cols=532 Identities=11% Similarity=0.037 Sum_probs=385.7
Q ss_pred hHHHHHHHH--HhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCChhhHHHHHhcCC--CCC-chhHHHHHHHHH
Q 006955 23 TWNVMIRGY--FKNGFLDNAMCLFNQMPE---RDMFTYNTVIAGLMQSDNVQGAKEVFDGME--VRD-VVTWNSMISGYV 94 (624)
Q Consensus 23 ~~~~l~~~~--~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~ 94 (624)
++..+..+. ...|++++|+..|+++.+ .+..++..|...|...|++++|+..+++.. .|+ ...+..+ ...
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i- 121 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI- 121 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh-
Confidence 444455544 345999999999999983 346788999999999999999999999987 343 3444444 222
Q ss_pred hCCChhHHHHHhccCCC--CC-cccHHHHHHH--------HHcCCChHHHHHHHHhcccCC--hhHHH-HHHHHHHhCCC
Q 006955 95 CNGLIDEALRVFHGMPL--KD-VVSWNLVIGA--------LVNCQRMDLAESYFKEMGARD--VASWT-IMVNGLVREGR 160 (624)
Q Consensus 95 ~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~--~~~~~-~l~~~~~~~g~ 160 (624)
+++++|..+++++.. |+ ...+..+... |.+.++..+++. .+...++ +.+.. .+..+|...|+
T Consensus 122 --~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred --ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence 999999999999985 53 4455555554 666666666665 3333444 44344 44889999999
Q ss_pred hHHHHHHhccCCCC---ChhHHHHHHHHHHHc-CChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCC-
Q 006955 161 IVEARKLFDKMPAK---DVQAWNLMIAGYLDN-GCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE- 235 (624)
Q Consensus 161 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 235 (624)
++.|++.+.++.+. +......|...|... ++ +.+..+++...+.++..+..++..|.+.|+.++|.+++.++..
T Consensus 198 w~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 198 WSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 99999999999854 445566777788883 77 8888888876667888899999999999999999999999863
Q ss_pred ----CCcchH------------------------------HHHHHHHHhcCChHHHHHHHhhcC----------------
Q 006955 236 ----TCEKTW------------------------------NSIISVLIRNGLVKEAHSYLEKYP---------------- 265 (624)
Q Consensus 236 ----~~~~~~------------------------------~~ll~~~~~~~~~~~a~~~~~~~~---------------- 265 (624)
|+..++ ..++..+.+.+.++-++++...-.
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 356 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATR 356 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccC
Confidence 222211 112455667777777766643221
Q ss_pred ----------------CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC-C-Cc----eehhhhhhHhhcCCC---chHHH
Q 006955 266 ----------------YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT-R-DV----TVWNVMIFGLGENDL---GEEGL 320 (624)
Q Consensus 266 ----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~----~~~~~l~~~~~~~~~---~~~a~ 320 (624)
+.+....-.+.....+.|+.++|.++|+.... + +. ..-+-++..|.+.+. ..++.
T Consensus 357 ~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 357 NKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred chhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 11223333344445667888888888887765 2 22 122345555655554 22332
Q ss_pred HH----------------------HHHhHHc-CC-CC--CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhH
Q 006955 321 KF----------------------FVQMKES-GP-SP--DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSN 374 (624)
Q Consensus 321 ~~----------------------~~~m~~~-~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (624)
.+ +...... +. ++ +...+..+..++.. ++.++|...+....... |+.....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L 513 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHR 513 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHH
Confidence 22 2221111 11 23 45566666666655 78888999888777654 3433333
Q ss_pred HHHHHhHhhCCHHHHHHHhccCC--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccCh
Q 006955 375 AMITMYARCGNIQSALLEFSSVP--IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGL 451 (624)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~ 451 (624)
.+...+...|++++|...|+++. +|+...+..+..++...|++++|...+++..+. .|+.. .+..+...+...|+
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCC
Confidence 44555578999999999998776 345556777788889999999999999999885 35443 33334445556799
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 452 VDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
+++|...+++..+ +.|+...+..+..++.+.|+.++|+..+++..+ ..| ++..+..+..++...|++++|+..+
T Consensus 592 ~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 592 PELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred HHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999987 468888899999999999999999999999988 456 5678888888999999999999999
Q ss_pred HHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 531 ERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 531 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+++++..|.++..+..++.++...|++++|...+++..+..
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999987654
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=3.4e-22 Score=189.50 Aligned_cols=432 Identities=14% Similarity=0.139 Sum_probs=306.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcccCCh---hHHHHHHHHHHhCCChHHHHHHhccCC---CCChhHHHHHHHHHHHcCC
Q 006955 118 NLVIGALVNCQRMDLAESYFKEMGARDV---ASWTIMVNGLVREGRIVEARKLFDKMP---AKDVQAWNLMIAGYLDNGC 191 (624)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 191 (624)
..|..-..+.|++.+|++.....-..|+ .....+-..+....+.+....--.... .....+|..+...+-..|+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 3344444556666666666555544322 111122233444444443332222111 1234567777777777777
Q ss_pred hhHHHHHHHHcccCC---cccHHHHHHHHHcCCCHHHHHHHhhhCCCCCc--ch-HHHHHHHHHhcCChHHHHHHHhhcC
Q 006955 192 VGVAEDLFQKMHDRD---LTSWKQLINGLVNSRRIDAAISYFKQMPETCE--KT-WNSIISVLIRNGLVKEAHSYLEKYP 265 (624)
Q Consensus 192 ~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~-~~~ll~~~~~~~~~~~a~~~~~~~~ 265 (624)
+++|+.+++.+.+.+ +..|..+..++...|+.+.|...|.+..+-|+ .. .+.+...+-..|++++|...+-++.
T Consensus 132 ~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi 211 (966)
T KOG4626|consen 132 LQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI 211 (966)
T ss_pred HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH
Confidence 777777777776533 34566677777777777777777766665333 32 2223444555677777777766666
Q ss_pred ---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCc---eehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-HHHH
Q 006955 266 ---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV---TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-NATF 338 (624)
Q Consensus 266 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~ 338 (624)
+.-..+|+.|...+...|++..|+..|++..+-|+ ..|-.|...|-..+.+++|+..|.+.... .|+ ...+
T Consensus 212 ~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~ 289 (966)
T KOG4626|consen 212 ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAH 289 (966)
T ss_pred hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhc
Confidence 22344577777777777777777777777765443 45666777777777777777777766543 454 3456
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcC
Q 006955 339 TSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHG 415 (624)
Q Consensus 339 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 415 (624)
..+...|-..|.++.|+..+++.++.. +.-+..|+.|..++...|++.+|...+.+.. .....+.+.|...|...|
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 666666677777888887777776643 3345567778888888888888888887765 334567888999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhccCChHHHHH
Q 006955 416 YAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAMN 493 (624)
Q Consensus 416 ~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 493 (624)
.++.|..+|....+ +.|.- ..++.|...|.+.|++++|+..+++..+ +.|+ ...|+.+...|...|+...|++
T Consensus 369 ~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 369 KIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred cchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 99999999999887 67775 5788999999999999999999999987 7885 7889999999999999999999
Q ss_pred HHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHH
Q 006955 494 LLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRED 559 (624)
Q Consensus 494 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 559 (624)
.+.+.+. +.|. ...++.|...|...|+..+|+..|+.++++.|+.|.+|-.++.++---.+|.+
T Consensus 444 ~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 444 CYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999987 6676 55889999999999999999999999999999999999999887765554443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=7.5e-21 Score=180.51 Aligned_cols=414 Identities=11% Similarity=0.121 Sum_probs=343.9
Q ss_pred HHHHHHHHHhCCChHHHHHHhccCCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCC
Q 006955 148 WTIMVNGLVREGRIVEARKLFDKMPAKDV---QAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSR 221 (624)
Q Consensus 148 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 221 (624)
...|.+-..+.|++.+|++....+-..|+ ...-.+-..+.+..+++....--....+. ...+|..+.+.+...|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 56677778899999999998766653322 22223334566666666665554444443 3457999999999999
Q ss_pred CHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcc---hhhHHHHHHHhcCChHHHHHHHhhc
Q 006955 222 RIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIA---SWTNVIVGYFEMGEVGSAIKVFELM 295 (624)
Q Consensus 222 ~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 295 (624)
++++|+.+++.+.+ | ....|..+..++...|+.+.|.+.|......++. +.+.+.......|++.+|...+.+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999999987 3 3458999999999999999999999988844443 3455677778899999999998877
Q ss_pred CC--C-CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcc
Q 006955 296 TT--R-DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT 371 (624)
Q Consensus 296 ~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (624)
.. | -...|+.|...+..+|+...|+..|++..+. .|+ ...|..+...+...+.++.|...+..+.... +....
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 64 3 3568999999999999999999999998764 555 3578888889999999999999988877653 33445
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCC--CC-CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhc
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVP--IH-DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACS 447 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 447 (624)
++..+...|-.+|.++-|+..+++.. .| =+..|+.|..++...|+..+|+..+.+... +.|+. ...+.|...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHH
Confidence 56668888999999999999999887 33 346899999999999999999999999988 56664 58889999999
Q ss_pred ccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKV 525 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 525 (624)
..|.+++|..++....+ +.| -....+.|...|-..|++++|+..+++.+. ++|+ ...++.+...|...|+...
T Consensus 366 E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHH
Confidence 99999999999999887 557 466788999999999999999999999887 7887 5689999999999999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 526 GEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 526 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
|.+.+.+++..+|.-..++..|+.+|...|+..+|+.-+++.++..
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987754
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.2e-19 Score=178.50 Aligned_cols=558 Identities=13% Similarity=0.099 Sum_probs=397.8
Q ss_pred hhHHHHHHhhCCCCCcc-hHHHHHHH--HHhcCChHHHHHHHhhCC--C----CCcchHHHHHHHHHcCCChhhHHHHHh
Q 006955 6 IQEAQNLFDKMPQRDTV-TWNVMIRG--YFKNGFLDNAMCLFNQMP--E----RDMFTYNTVIAGLMQSDNVQGAKEVFD 76 (624)
Q Consensus 6 ~~~A~~~~~~~~~~~~~-~~~~l~~~--~~~~g~~~~A~~~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~A~~~~~ 76 (624)
++.|...|..+.+.++. +...|.++ ....|++..|+.+|..+. . +|+. -.+..++.+.|+.+.|+..|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 57888888888875444 33334444 356789999999999965 2 3332 233456668899999999999
Q ss_pred cCCCCCchhHHHHHH---HHHhCC---ChhHHHHHhccCCC---CCcccHHHHHHHHHcCCChHHHHHHHHhcccCC---
Q 006955 77 GMEVRDVVTWNSMIS---GYVCNG---LIDEALRVFHGMPL---KDVVSWNLVIGALVNCQRMDLAESYFKEMGARD--- 144 (624)
Q Consensus 77 ~~~~~~~~~~~~l~~---~~~~~g---~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 144 (624)
+..+-|+...++++. .-.... .+..++..+...-. .||...+.|.+.+..-|++..+..+...+...+
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 887544443333333 223333 34455555554432 578889999999999999999999998887642
Q ss_pred ---hhHHHHHHHHHHhCCChHHHHHHhccCCCC---C-hhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHH
Q 006955 145 ---VASWTIMVNGLVREGRIVEARKLFDKMPAK---D-VQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLI 214 (624)
Q Consensus 145 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~ 214 (624)
...|--+..+|...|++++|.+.|.+..+. + +..+.-++..+.+.|+++.+...|+.+.+. +..+...|.
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 345778889999999999999999877643 2 445667788999999999999999999763 334666666
Q ss_pred HHHHcCC----CHHHHHHHhhhCCCC---CcchHHHHHHHHHhcCChHHHHHHHhhcC--------CCCcchhhHHHHHH
Q 006955 215 NGLVNSR----RIDAAISYFKQMPET---CEKTWNSIISVLIRNGLVKEAHSYLEKYP--------YSNIASWTNVIVGY 279 (624)
Q Consensus 215 ~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~ 279 (624)
..|...+ ..+.|..++....++ |...|..+...+...+-+.. ..+|..+. +..+.+.|.+...+
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 6666664 557777777777664 44466666666554433322 44443333 66777899999999
Q ss_pred HhcCChHHHHHHHhhcCCC-------Cce------ehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHH-HHHHHHHH
Q 006955 280 FEMGEVGSAIKVFELMTTR-------DVT------VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNAT-FTSVLTIC 345 (624)
Q Consensus 280 ~~~g~~~~A~~~~~~~~~~-------~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~ 345 (624)
...|++.+|...|+..... +.. +--.+...+-..++++.|.+.|+.+.+. .|.-.+ |.-++...
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHH
Confidence 9999999999999877532 221 1223445566678899999999998876 566543 33333334
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC-----CCCchhHHHHHHHHHH-------
Q 006955 346 SDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP-----IHDIISWNSIICGLAY------- 413 (624)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~------- 413 (624)
...+...+|...+..+.... ..++.+.+-+...|.+...+..|.+-|+.+. .+|+.+.-+|.+.|.+
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 45577888888888777643 4455555656668888888888877554443 3355554455554432
Q ss_pred -----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCCh
Q 006955 414 -----HGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLI 488 (624)
Q Consensus 414 -----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 488 (624)
.+..++|+++|.+.+... +-|...-+.+.-.++..|++++|..+|..+.+. ..-...+|-.+.++|...|++
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHH
Confidence 245678899999888742 345567777888899999999999999999986 334678888999999999999
Q ss_pred HHHHHHHHHcccC-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh--------------
Q 006955 489 DEAMNLLNEIRAD-GIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLS-------------- 553 (624)
Q Consensus 489 ~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------------- 553 (624)
..|+++|+...+. .-..++.+...|..++...|.+.+|......++...|.|+..-..++.+..+
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~e 776 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLE 776 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHH
Confidence 9999999986654 3344688999999999999999999999999999999999887766665543
Q ss_pred -----cCChHHHHHHHHHHHHCCC
Q 006955 554 -----CGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 554 -----~g~~~~A~~~~~~m~~~~~ 572 (624)
.+..+.|.++|..|...+-
T Consensus 777 ev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 777 EVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2446777788888877664
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.8e-19 Score=180.29 Aligned_cols=527 Identities=11% Similarity=0.073 Sum_probs=388.3
Q ss_pred hHHHHHHHhhCCCCCc-chHHHHHHHHH--cCCChhhHHHHHhcCC------CCCchhHHHHHHHHHhCCChhHHHHHhc
Q 006955 37 LDNAMCLFNQMPERDM-FTYNTVIAGLM--QSDNVQGAKEVFDGME------VRDVVTWNSMISGYVCNGLIDEALRVFH 107 (624)
Q Consensus 37 ~~~A~~~~~~~~~~~~-~~~~~l~~~~~--~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 107 (624)
++.|...|....+.++ .+...+..++. ..+++..|+.+|.... +||+.+ .+..++.+.|+.+.|+..|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 4888888888874332 34444555554 5789999999999854 345443 44567789999999999999
Q ss_pred cCCCCCcccHHHHHHHHH---cC---CChHHHHHHHHhccc---CChhHHHHHHHHHHhCCChHHHHHHhccCCCCC---
Q 006955 108 GMPLKDVVSWNLVIGALV---NC---QRMDLAESYFKEMGA---RDVASWTIMVNGLVREGRIVEARKLFDKMPAKD--- 175 (624)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~---~~---~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 175 (624)
+..+-|+...++++.... .. ..+..+..++...-. .+|...+.|.+.|.-.|++..+..+...+....
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 999866654444443322 22 344556666655543 488999999999999999999999987776432
Q ss_pred ---hhHHHHHHHHHHHcCChhHHHHHHHHcccCC----cccHHHHHHHHHcCCCHHHHHHHhhhCCC--C-CcchHHHHH
Q 006955 176 ---VQAWNLMIAGYLDNGCVGVAEDLFQKMHDRD----LTSWKQLINGLVNSRRIDAAISYFKQMPE--T-CEKTWNSII 245 (624)
Q Consensus 176 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll 245 (624)
...|..+.++|-..|++++|...|.+..+.+ +.++..|.+.|+..|+.+.+...|+...+ | +..+...+.
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3468889999999999999999999887632 33577899999999999999999999886 4 345777777
Q ss_pred HHHHhcC----ChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcC--------CCCceehhhhhhHh
Q 006955 246 SVLIRNG----LVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMT--------TRDVTVWNVMIFGL 310 (624)
Q Consensus 246 ~~~~~~~----~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~ 310 (624)
..|...+ ..+.|..++.+.. +.|...|-.+...+...+-+ .++..|..+. ..-+...|.+...+
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 7777665 5677888887777 45555666666666554433 3355444332 23556788999999
Q ss_pred hcCCCchHHHHHHHHhHHc---CCCCCH------HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhH
Q 006955 311 GENDLGEEGLKFFVQMKES---GPSPDN------ATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYA 381 (624)
Q Consensus 311 ~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (624)
...|++.+|...|.+.... ...++. .+-..+.......++.+.|...+..+.+..+ .-+..|-.++.+-.
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMAR 541 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHH
Confidence 9999999999999987654 223333 2223445556677899999999999988642 11222222332222
Q ss_pred hhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHhcc---------
Q 006955 382 RCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTD-FKPDDITFVGVLSACSY--------- 448 (624)
Q Consensus 382 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~--------- 448 (624)
..++..+|..++..+. ..++..|+.+...+.....+..|.+-|....+.- ..+|..+...|...|.+
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 3357778888888766 5677888888889999999999988777766532 23566666666654432
Q ss_pred ---cChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChH
Q 006955 449 ---AGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIK 524 (624)
Q Consensus 449 ---~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 524 (624)
.+..+.|+++|.++.+ ..| |...-|.+.-+++..|++.+|..+|.+..+.. .....+|..+..+|...|++.
T Consensus 622 ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHH
Confidence 2456788888888887 346 88888999999999999999999999998764 345678999999999999999
Q ss_pred HHHHHHHHHHcc--CCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 525 VGEIAGERVMEL--EPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 525 ~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.|+++|+.+.+. ..+++.+...|++++.+.|++.+|.+.+.......
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999983 34467889999999999999999999988776553
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4.9e-19 Score=186.55 Aligned_cols=251 Identities=14% Similarity=0.091 Sum_probs=198.9
Q ss_pred CCCchHHHHHHHHhHHcC-CCCC-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHH
Q 006955 313 NDLGEEGLKFFVQMKESG-PSPD-NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSAL 390 (624)
Q Consensus 313 ~~~~~~a~~~~~~m~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (624)
.+++++|++.|++..+.+ ..|+ ...+..+...+...|+++.|...++...+.. +.....+..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888887754 2343 3456666667778888999988888887753 223446667788888899999999
Q ss_pred HHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhc
Q 006955 391 LEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKY 466 (624)
Q Consensus 391 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 466 (624)
..|+++. +.++..|..+...+...|++++|...|++..+. .|+ ...+..+...+.+.|++++|...+++..+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 9888765 446778889999999999999999999999884 555 456777778889999999999999998874
Q ss_pred CCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH-HH-------HHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 467 FLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP-TV-------WGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 467 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
.| ++..++.+..++...|++++|++.|++..+. .|+. .. ++.....+...|++++|..+++++++++
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 35 6788999999999999999999999998763 3321 11 1112222334699999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 538 PNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 538 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
|.+...+..++.++...|++++|.+.+++..+..
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9888899999999999999999999999987653
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=3.3e-19 Score=178.64 Aligned_cols=288 Identities=11% Similarity=0.065 Sum_probs=194.5
Q ss_pred hcCChHHHHHHHhhcCCC---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC---HHHHHHHHHHHcCCCCcHHH
Q 006955 281 EMGEVGSAIKVFELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD---NATFTSVLTICSDLPTLDLG 354 (624)
Q Consensus 281 ~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a 354 (624)
..|++++|...|.++... +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344444444444444321 222344444445555555555555555444321111 12334444455555555555
Q ss_pred HHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC--CC------chhHHHHHHHHHHcCChHHHHHHHHH
Q 006955 355 RQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI--HD------IISWNSIICGLAYHGYAEKALELFER 426 (624)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (624)
..+|..+.+. .+.+..+++.++..+.+.|++++|.+.++.+.. |+ ...+..+...+...|++++|...+++
T Consensus 127 ~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555555443 122344455555566666666666666555541 11 11345677778889999999999999
Q ss_pred HHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHhhccCChHHHHHHHHHcccCCC
Q 006955 427 MRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR--SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGI 503 (624)
Q Consensus 427 m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (624)
+.+. .|+ ...+..+...+.+.|++++|.++++++.+. .|+ ..+++.++.+|...|++++|.+.++++.+ .
T Consensus 206 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~ 278 (389)
T PRK11788 206 ALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--E 278 (389)
T ss_pred HHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 9874 344 457777888899999999999999998874 343 45678899999999999999999999887 4
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh---cCChHHHHHHHHHHHHCCCccCCc
Q 006955 504 EVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLS---CGRREDAKRIFAQMKENGVKKEPG 577 (624)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 577 (624)
.|+...+..++..+...|++++|...++++++..|+++ .+..++..+.. .|+.+++..++++|.+++++++|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 67777778888999999999999999999999999554 66666665553 569999999999999999988887
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1.7e-17 Score=174.98 Aligned_cols=414 Identities=12% Similarity=-0.028 Sum_probs=271.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccc--CChhHHHHHHHHHHhCCChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCC
Q 006955 117 WNLVIGALVNCQRMDLAESYFKEMGA--RDVASWTIMVNGLVREGRIVEARKLFDKMPAK---DVQAWNLMIAGYLDNGC 191 (624)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 191 (624)
+......+.+.|++++|+..|++..+ |++..|..+..+|.+.|++++|++.++...+. +..++..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 34455566667777777777776654 55566666777777777777777777666532 44566677777777777
Q ss_pred hhHHHHHHHHcccCCcc---cHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCC
Q 006955 192 VGVAEDLFQKMHDRDLT---SWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSN 268 (624)
Q Consensus 192 ~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 268 (624)
+++|+..|......+.. ....++..+........+...++.-. ++...+..+...+ ..........-+......+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCcchhhhhcccccc
Confidence 77777666554332211 11111111111111222333332211 2222222222222 1111111111111111111
Q ss_pred cch---hhHHHHHH---HhcCChHHHHHHHhhcCCC------CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-H
Q 006955 269 IAS---WTNVIVGY---FEMGEVGSAIKVFELMTTR------DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-N 335 (624)
Q Consensus 269 ~~~---~~~l~~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~ 335 (624)
... +..+...+ ...+++++|.+.|+..... ....|+.+...+...|++++|+..|++..+. .|+ .
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~ 365 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVT 365 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcH
Confidence 111 11111111 2246788888888877642 3345777778888899999999999998775 455 4
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHH
Q 006955 336 ATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLA 412 (624)
Q Consensus 336 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 412 (624)
..|..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|+..|++.. +.+...+..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 577777888888999999999999888764 4456778888999999999999999999876 335667888888999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC-cch-------HHHHHHHhh
Q 006955 413 YHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-SAH-------YTCVVDLLG 483 (624)
Q Consensus 413 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~-------~~~l~~~~~ 483 (624)
+.|++++|+..+++..+. .|+ ...+..+...+...|++++|+..|++..+ +.|+ ... ++.....+.
T Consensus 445 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHH
Confidence 999999999999999874 454 56788888899999999999999999886 3342 111 122222344
Q ss_pred ccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 006955 484 RFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 542 (624)
..|++++|.+++++.... .|+ ...+..+...+...|++++|...++++.++.+....
T Consensus 520 ~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 520 WKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 569999999999998773 454 557888999999999999999999999998875433
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=6.4e-18 Score=177.33 Aligned_cols=367 Identities=10% Similarity=0.027 Sum_probs=217.7
Q ss_pred HHhCCChHHHHHHhccCCCC------ChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHH
Q 006955 155 LVREGRIVEARKLFDKMPAK------DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDA 225 (624)
Q Consensus 155 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 225 (624)
+.+..+|+..--+|..-.+. +..-...++..+.+.|++++|..+++..... +...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 34555666555555444321 2223344455566667777777766666542 22234444444445555555
Q ss_pred HHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCcee
Q 006955 226 AISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTV 302 (624)
Q Consensus 226 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 302 (624)
|+..++.+..-+ |.+...+..+...+...|++++|...+++... .+...
T Consensus 95 A~~~l~~~l~~~----------------------------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a 146 (656)
T PRK15174 95 VLQVVNKLLAVN----------------------------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQI 146 (656)
T ss_pred HHHHHHHHHHhC----------------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 555555554311 33333444444455555555555555554432 13344
Q ss_pred hhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHh
Q 006955 303 WNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYAR 382 (624)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (624)
+..+...+...|++++|...++.+.... |+.......+..+...|++++|...++.+.+....++......+...+..
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 5555555666666666666665554432 22111111122345556666666666655554333333333444556666
Q ss_pred hCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHH
Q 006955 383 CGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEK----ALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQ 454 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~ 454 (624)
.|++++|+..+++.. +.+...+..+...+...|++++ |+..+++..+ ..|+. ..+..+...+...|++++
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 777777777766654 3345667777788888888875 7888888887 45554 577777788888888899
Q ss_pred HHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 006955 455 GRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT-VWGALLGACRIHNNIKVGEIAGER 532 (624)
Q Consensus 455 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 532 (624)
|...++++.+. .| +...+..+..+|.+.|++++|+..++++.+. .|+.. .+..+..++...|+.++|...+++
T Consensus 303 A~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 303 AIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888863 45 5666777888888889999999888888763 45543 333455667888899999999999
Q ss_pred HHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 533 VMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 533 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+++..|.+. ...+++|...+.+..+.
T Consensus 378 al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 378 YIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 888888653 23445555555555443
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.6e-18 Score=172.10 Aligned_cols=227 Identities=12% Similarity=0.055 Sum_probs=159.5
Q ss_pred hhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCc----chhHHHHH
Q 006955 303 WNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFT----TVSNAMIT 378 (624)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 378 (624)
+..+...|...|++++|..+|+++.+.. +++..++..+...+...|++++|...+..+.+.+..+.. ..+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 4445555555555666666655555431 233445555555556666666666666655554332211 12344566
Q ss_pred HhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHH
Q 006955 379 MYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQG 455 (624)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 455 (624)
.+.+.|++++|...|+++. +.+...+..+...+...|++++|.++++++.+.+..+...++..+..++...|++++|
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 6777788888887777765 2244567778888999999999999999998743222235677888899999999999
Q ss_pred HHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh---cCChHHHHHHHHH
Q 006955 456 RYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI---HNNIKVGEIAGER 532 (624)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~ 532 (624)
...++++.+. .|+...+..++..+.+.|++++|.++++++.+ ..|+...++.++..+.. .|+..++...+++
T Consensus 269 ~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 269 LEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 9999998873 57777778899999999999999999998887 46888888888877654 5588888888888
Q ss_pred HHc
Q 006955 533 VME 535 (624)
Q Consensus 533 ~~~ 535 (624)
+.+
T Consensus 344 ~~~ 346 (389)
T PRK11788 344 LVG 346 (389)
T ss_pred HHH
Confidence 776
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=1.1e-17 Score=175.68 Aligned_cols=344 Identities=11% Similarity=-0.001 Sum_probs=274.0
Q ss_pred HcCCCHHHHHHHhhhCCC------CCcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHH
Q 006955 218 VNSRRIDAAISYFKQMPE------TCEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSA 288 (624)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 288 (624)
.++.+|+.-.-.|....+ .+......++..+.+.|++++|..++.... +.+......++.+....|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 344445444444444433 233355666777888899999888888876 55666677777888889999999
Q ss_pred HHHHhhcCC--C-CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006955 289 IKVFELMTT--R-DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-NATFTSVLTICSDLPTLDLGRQIHAQAIKI 364 (624)
Q Consensus 289 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 364 (624)
...|+++.. | +...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|+.+.|...++.+...
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999998864 2 5567888888999999999999999999875 444 567778888999999999999999988776
Q ss_pred CCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC----CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhH
Q 006955 365 ARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH----DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITF 439 (624)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~ 439 (624)
...+.. .+..+ ..+...|++++|...++.+... +...+..+..++...|++++|+..++++.+. .|+ ...+
T Consensus 174 ~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~ 249 (656)
T PRK15174 174 VPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALR 249 (656)
T ss_pred CCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHH
Confidence 544333 33223 3478899999999999886632 2334455567888999999999999999985 454 4577
Q ss_pred HHHHHHhcccChHHH----HHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHH
Q 006955 440 VGVLSACSYAGLVDQ----GRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGAL 513 (624)
Q Consensus 440 ~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 513 (624)
..+...+...|++++ |...++++.+ +.| +...+..+...+...|++++|+..+++..+. .| ++..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~L 324 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 778888999999885 8999999887 456 6778999999999999999999999998874 55 46678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 572 (624)
..++...|++++|...++++.+..|.++..+..++.++...|++++|...+++..+...
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 89999999999999999999999998777777788899999999999999999887653
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.4e-17 Score=178.78 Aligned_cols=118 Identities=8% Similarity=-0.056 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccc---CChhHHHHHHHHHHhCCChHHHHHHhccCC---CCChhHHHHHHHHHHHcC
Q 006955 117 WNLVIGALVNCQRMDLAESYFKEMGA---RDVASWTIMVNGLVREGRIVEARKLFDKMP---AKDVQAWNLMIAGYLDNG 190 (624)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g 190 (624)
....+......|+.++|++++.+... .+...+..+..++...|++++|.+.+++.. ..+...+..++..+...|
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 34445555566666666666666653 123345666666666666666666666643 224555556666666666
Q ss_pred ChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCC
Q 006955 191 CVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPE 235 (624)
Q Consensus 191 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 235 (624)
++++|+..+++..+. +.. +..+...+...|+.++|+..++++.+
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666542 222 44444455555555555555555543
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.8e-16 Score=170.10 Aligned_cols=391 Identities=9% Similarity=-0.006 Sum_probs=233.4
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHH
Q 006955 144 DVASWTIMVNGLVREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGL 217 (624)
Q Consensus 144 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 217 (624)
++.-....+......|+.++|++++.+... .+...+..+...+.+.|++++|..++++..+. +...+..++..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 444455566667778888888888877663 24445777788888888888888888886553 233456666777
Q ss_pred HcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHH
Q 006955 218 VNSRRIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKV 291 (624)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 291 (624)
...|++++|+..+++..+ | +.. +..+..++...|+.++|...++++. |.+...+..+..++...|..+.|++.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 777777777777777654 3 233 5556666677777777777776666 44444555566666666666666666
Q ss_pred HhhcCCCCce--------ehhhhhhHhh-----cCCCc---hHHHHHHHHhHHc-CCCCCHH-HHHHHHHHHcCCCCcHH
Q 006955 292 FELMTTRDVT--------VWNVMIFGLG-----ENDLG---EEGLKFFVQMKES-GPSPDNA-TFTSVLTICSDLPTLDL 353 (624)
Q Consensus 292 ~~~~~~~~~~--------~~~~l~~~~~-----~~~~~---~~a~~~~~~m~~~-~~~p~~~-~~~~ll~~~~~~~~~~~ 353 (624)
++.+.. ++. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+...
T Consensus 173 l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a------------ 239 (765)
T PRK10049 173 IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA------------ 239 (765)
T ss_pred HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH------------
Confidence 665554 111 0011111111 11112 3344444444322 1111110 00000
Q ss_pred HHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCC---ch-hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006955 354 GRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHD---II-SWNSIICGLAYHGYAEKALELFERMRL 429 (624)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~ 429 (624)
....+..+...|++++|+..|+++...+ +. .-..+..+|...|++++|+.+|+++.+
T Consensus 240 -------------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 240 -------------------RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred -------------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 0000122334466666666666655221 11 111235566677777777777777665
Q ss_pred CCCCCCh-----hhHHHHHHHhcccChHHHHHHHHHHhhhhcC----------CCCC---cchHHHHHHHhhccCChHHH
Q 006955 430 TDFKPDD-----ITFVGVLSACSYAGLVDQGRYYFDCMKNKYF----------LQPR---SAHYTCVVDLLGRFGLIDEA 491 (624)
Q Consensus 430 ~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A 491 (624)
. .|.. .....+..++...|++++|.++++.+..... -.|+ ...+..++..+...|+.++|
T Consensus 301 ~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 301 H--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred c--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 3 2221 2344455566677777777777777665310 0122 12344566677778888888
Q ss_pred HHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 492 MNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 492 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+++++++.... +.++..+..+...+...|++++|+..++++++..|+++..+..++..+...|++++|..+++++.+.
T Consensus 379 ~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 379 EMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88888877631 3356677777777888888888888888888888888888888888888888888888888877764
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=2.1e-16 Score=166.11 Aligned_cols=437 Identities=13% Similarity=0.045 Sum_probs=287.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHhccCCC--CCcc-cHHHHHHHHHcCCChHHHHHHHHhcccCCh-hHHHHH--HHHHHhC
Q 006955 85 TWNSMISGYVCNGLIDEALRVFHGMPL--KDVV-SWNLVIGALVNCQRMDLAESYFKEMGARDV-ASWTIM--VNGLVRE 158 (624)
Q Consensus 85 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l--~~~~~~~ 158 (624)
+.-.-+-...++|+++.|+..|++..+ |+.. ....++..+...|+.++|..++++...|+. ..+..+ ...+...
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 333444456777888888888887775 4321 123677777777888888888888776533 233333 4466777
Q ss_pred CChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHH--cCCCHHHHHHHhhhC
Q 006955 159 GRIVEARKLFDKMPAK---DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLV--NSRRIDAAISYFKQM 233 (624)
Q Consensus 159 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~ 233 (624)
|++++|+++++++.+. ++..+..++..+.+.++.++|++.++++...++.....+..++. ..++..+|++.++++
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8888888888777632 45666677777777888888888888877655443222333333 344554577777777
Q ss_pred CC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHh
Q 006955 234 PE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGL 310 (624)
Q Consensus 234 ~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 310 (624)
.+ | +...+..+..++.+.|-...|.++..+-. +..+-..... =+.+.|.+..+....++ -
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~-----l~~~~~a~~vr~a~~~~----------~ 258 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQ-----LERDAAAEQVRMAVLPT----------R 258 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHH-----HHHHHHHHHHhhccccc----------c
Confidence 65 3 23345566666666666666666654422 1111000000 00111111111111000 0
Q ss_pred hcCCC---chHHHHHHHHhHHc-CCCCCH-HHH----HHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhH
Q 006955 311 GENDL---GEEGLKFFVQMKES-GPSPDN-ATF----TSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYA 381 (624)
Q Consensus 311 ~~~~~---~~~a~~~~~~m~~~-~~~p~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (624)
....+ .+.|+.-++.+... +-.|.. ..| .-.+.++...++...+...++.+...+.+....+-.++.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 01112 34455555555442 222322 222 2344567788889999999999988888777778888999999
Q ss_pred hhCCHHHHHHHhccCCCC---------CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCh---hh
Q 006955 382 RCGNIQSALLEFSSVPIH---------DIISWNSIICGLAYHGYAEKALELFERMRLTDF-----------KPDD---IT 438 (624)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~~---~~ 438 (624)
..+++++|+.++..+..+ +......|.-+|...+++++|..+++.+.+.-. .||+ ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 999999999999887521 222346788889999999999999999987311 2333 23
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGA 516 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 516 (624)
+..++..+.-.|+..+|++.++++.. ..| |......+.+.+...|.+.+|.+.++.... +.|+ ..+....+.+
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHH
Confidence 44556678889999999999999987 346 899999999999999999999999988776 4564 5677788888
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCch
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGV 543 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 543 (624)
+...|++.+|..+.+.+.+..|+++.+
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 899999999999999999999977744
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=5.1e-15 Score=155.75 Aligned_cols=419 Identities=10% Similarity=0.027 Sum_probs=304.2
Q ss_pred HHHHHHHhCCChHHHHHHhccCCCCChh---HHHHHHHHHHHcCChhHHHHHHHHcccCCccc-HHHH--HHHHHcCCCH
Q 006955 150 IMVNGLVREGRIVEARKLFDKMPAKDVQ---AWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTS-WKQL--INGLVNSRRI 223 (624)
Q Consensus 150 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l--~~~~~~~~~~ 223 (624)
.-+-...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++...++... +..+ ...+...|++
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 3344567999999999999999854333 23388888999999999999999999765443 3333 4578888999
Q ss_pred HHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHh--cCChHHHHHHHhhcCCC
Q 006955 224 DAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFE--MGEVGSAIKVFELMTTR 298 (624)
Q Consensus 224 ~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 298 (624)
++|+++++++.+ | ++..+..++..+...++.++|.+.++.+.+.++.....+..+|.. .++..+|+..++++...
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999999986 3 345666777888999999999999999995554443334444444 55665699999988753
Q ss_pred ---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHH------HHHHHHHH-----cCCCCcHHHHHHH---HHH
Q 006955 299 ---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNAT------FTSVLTIC-----SDLPTLDLGRQIH---AQA 361 (624)
Q Consensus 299 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~------~~~ll~~~-----~~~~~~~~a~~~~---~~~ 361 (624)
+...+..+..++.+.|-...|.++..+-... ..|.... ....++.- ....++..+.+.+ +.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 5566778888899999999999877653211 1111111 11111111 0122333333333 333
Q ss_pred HHh-CC-CCCcchh-HH---HHHHhHhhCCHHHHHHHhccCCCC----CchhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006955 362 IKI-AR-NQFTTVS-NA---MITMYARCGNIQSALLEFSSVPIH----DIISWNSIICGLAYHGYAEKALELFERMRLTD 431 (624)
Q Consensus 362 ~~~-~~-~~~~~~~-~~---l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 431 (624)
... +. |+....+ .+ .+-++...|+..++++.|+.+..+ ...+-..+.++|...+.+++|+.+++++....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 332 21 2222222 22 345677889999999999999832 22355668899999999999999999997642
Q ss_pred C-----CCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcC----------CCCCc---chHHHHHHHhhccCChHHHHH
Q 006955 432 F-----KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF----------LQPRS---AHYTCVVDLLGRFGLIDEAMN 493 (624)
Q Consensus 432 ~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~~---~~~~~l~~~~~~~g~~~~A~~ 493 (624)
- .++......|..++...+++++|..+++.+.+... -.||+ ..+..++..+.-.|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1 12223356788899999999999999999987321 01332 234456778889999999999
Q ss_pred HHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 494 LLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 494 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.++++.... +-|...+..+...+...|.+.+|+..++.+..+.|.+..+...++.++...|+|.+|..+.+...+.
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999998742 3478899999999999999999999999999999999999999999999999999999988777554
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=8.8e-15 Score=146.22 Aligned_cols=564 Identities=13% Similarity=0.058 Sum_probs=379.3
Q ss_pred CCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhhHHHHHh
Q 006955 3 NARIQEAQNLFDKMPQ---RDTVTWNVMIRGYFKNGFLDNAMCLFNQMP---ERDMFTYNTVIAGLMQSDNVQGAKEVFD 76 (624)
Q Consensus 3 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 76 (624)
+|++++|..++.++.+ .++..|.+|...|-+.|+.+++...+-.+- +.|..-|..+.....+.|+++.|.-+|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4999999999999886 355789999999999999999988765543 5677889999999999999999999999
Q ss_pred cCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCc----c----cHHHHHHHHHcCCChHHHHHHHHhccc---
Q 006955 77 GME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDV----V----SWNLVIGALVNCQRMDLAESYFKEMGA--- 142 (624)
Q Consensus 77 ~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 142 (624)
+.. +++...+---...|-+.|+...|...|.++.+-++ . .--.++..+...++.+.|.+.++....
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 877 44555555667788999999999999999987322 1 122345566677777999988887765
Q ss_pred --CChhHHHHHHHHHHhCCChHHHHHHhccCCC-------------------------------CChhH-HHHHHHHHHH
Q 006955 143 --RDVASWTIMVNGLVREGRIVEARKLFDKMPA-------------------------------KDVQA-WNLMIAGYLD 188 (624)
Q Consensus 143 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------------~~~~~-~~~l~~~~~~ 188 (624)
.+...++.++..+.+...++.+......+.. .+..+ +..+.....+
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence 2556788888888888888887776544432 12223 2223333344
Q ss_pred cCChhHHHHHHHHccc----CCcccHHHHHHHHHcCCCHHHHHHHhhhCCC----CCcchHHHHHHHHHhcCChHHHHHH
Q 006955 189 NGCVGVAEDLFQKMHD----RDLTSWKQLINGLVNSRRIDAAISYFKQMPE----TCEKTWNSIISVLIRNGLVKEAHSY 260 (624)
Q Consensus 189 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~ 260 (624)
.++..+++..+..-.. .++..|..+..+|...|.+.+|+.+|..+.. .+...|..+..++...|..+.|.+.
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 4555555544433222 2445688899999999999999999999986 3455899999999999999999999
Q ss_pred HhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCce-----eh-------hhhhhHhhcCCCchHHHHHHHH
Q 006955 261 LEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVT-----VW-------NVMIFGLGENDLGEEGLKFFVQ 325 (624)
Q Consensus 261 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~-------~~l~~~~~~~~~~~~a~~~~~~ 325 (624)
|+.+. |.+..+...|...+.+.|+.++|.+.+..+..+|.. .| ......+.+.|+.++-+.+-..
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99998 666667778888999999999999999998766522 11 1233446677777765555444
Q ss_pred hHHcC-----CCC-----------------CHHHHHHHHHHHcCCCCcHHHHHHHH------HHHHhCCCCCc--chhHH
Q 006955 326 MKESG-----PSP-----------------DNATFTSVLTICSDLPTLDLGRQIHA------QAIKIARNQFT--TVSNA 375 (624)
Q Consensus 326 m~~~~-----~~p-----------------~~~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~~~~--~~~~~ 375 (624)
|.... +-| ...+...+..+-.+.++......... .....|...+. ..+.-
T Consensus 552 Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e 631 (895)
T KOG2076|consen 552 LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRE 631 (895)
T ss_pred HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHH
Confidence 43221 111 11222222333333333222111111 11112222222 23456
Q ss_pred HHHHhHhhCCHHHHHHHhccCCCC-----Cc----hhHHHHHHHHHHcCChHHHHHHHHHHHHC-CC--CCCh-hhHHHH
Q 006955 376 MITMYARCGNIQSALLEFSSVPIH-----DI----ISWNSIICGLAYHGYAEKALELFERMRLT-DF--KPDD-ITFVGV 442 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~--~p~~-~~~~~l 442 (624)
++...++.+++++|+.+...+... +. ..-...+.+....+++..|...++.|... +. .|.. ..|+..
T Consensus 632 ~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~ 711 (895)
T KOG2076|consen 632 LILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLD 711 (895)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 778889999999999988776521 21 12344566777899999999999998864 22 2222 345555
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH-HH-
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQPR--SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA-CR- 518 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~- 518 (624)
++...+.|+-.--.+++..+... .|+ +..+..........+.+..|+..+-+... ..|+....+..+.. +.
T Consensus 712 ~s~~~~~~q~v~~~R~~~~~~~~---~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 712 FSYFSKYGQRVCYLRLIMRLLVK---NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---CccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHH
Confidence 55566665554444444444332 232 33333444556678899999998877665 46764444444332 21
Q ss_pred ---------hcCChHHHHHHHHHHHccCCC--CCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 519 ---------IHNNIKVGEIAGERVMELEPN--NSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 519 ---------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++-..-++..++.+..++... ...+++.++++|...|-..-|.+++++.++-.
T Consensus 787 ~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 787 LALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 222334566666666665543 57889999999999999999999999887653
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=1.7e-13 Score=131.95 Aligned_cols=363 Identities=14% Similarity=0.163 Sum_probs=273.8
Q ss_pred cHHHHHHHHHcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhc
Q 006955 209 SWKQLINGLVNSRRIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEM 282 (624)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 282 (624)
+|..-.+.|.+.+.++-|..+|....+ | +...|......--..|..++...++.++. +.....|......+...
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 456666667777777777777776665 2 33456666666666778888888887777 44455566667777778
Q ss_pred CChHHHHHHHhhcCCC---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006955 283 GEVGSAIKVFELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHA 359 (624)
Q Consensus 283 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 359 (624)
|++..|..++..+-+. +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..-.-.++.++|.++++
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 8888888888777542 4556777777788888888888888877664 6777666665555666788888888888
Q ss_pred HHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 006955 360 QAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD 436 (624)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 436 (624)
..++. ++.-...|-.+...+-+.++++.|.+.|..-. +..+..|-.+...--+.|.+-+|..++++.+-.+ +-|.
T Consensus 676 e~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~ 753 (913)
T KOG0495|consen 676 EALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNA 753 (913)
T ss_pred HHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcc
Confidence 77764 34445566777788888888888888887655 3455677777777777888888999998887753 4455
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
..|...+..-.+.|+.+.|..++.++.+. .+.+...|..-|....+.++-......+++.. .|+.+...+...
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce-----~dphVllaia~l 826 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-----HDPHVLLAIAKL 826 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc-----CCchhHHHHHHH
Confidence 68888888888899999999888888876 33366677778888888787666666666544 566677778888
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEc
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQIN 584 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 584 (624)
+....+++.|...|+++++..|++..+|..+...+.++|.-++-.+++.+.... +|+-|..|+-++
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 888999999999999999999999999999999999999999999999877654 466666776554
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=4.4e-16 Score=143.07 Aligned_cols=454 Identities=13% Similarity=0.070 Sum_probs=295.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHhccCCC----CCccc-HHHHHHHHHcCCChHHHHHHHHhccc--CC--h----hHHHHH
Q 006955 85 TWNSMISGYVCNGLIDEALRVFHGMPL----KDVVS-WNLVIGALVNCQRMDLAESYFKEMGA--RD--V----ASWTIM 151 (624)
Q Consensus 85 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--~----~~~~~l 151 (624)
+...|..-|..+....+|+..|+-+.+ |+.-. -..+...+.+.+++.+|+++|+.... |+ . .+.+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 344456667777888899998887765 44322 12234556778889999999887764 32 2 233444
Q ss_pred HHHHHhCCChHHHHHHhccCCC--CChhHHHHHHHHHHHcCChhHHHHHHHHcccC----Cc--------ccHHHHHHHH
Q 006955 152 VNGLVREGRIVEARKLFDKMPA--KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR----DL--------TSWKQLINGL 217 (624)
Q Consensus 152 ~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--------~~~~~l~~~~ 217 (624)
--.+.+.|.+++|+..|+...+ ||..+-..|+-++.--|+-++..+.|.+|..- |. .+-..|+.--
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 4467789999999999998873 56666555666666778999999999998641 00 0122222222
Q ss_pred HcCC-----------CHHHHHHHhhhCCC----CCcc-hHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHh
Q 006955 218 VNSR-----------RIDAAISYFKQMPE----TCEK-TWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFE 281 (624)
Q Consensus 218 ~~~~-----------~~~~A~~~~~~~~~----~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 281 (624)
.+.. +.++++-.-.++.. |+.. .+.-.+..+-.....+.|..+ -..-...|.+
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl-----------ei~ka~~~lk 431 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL-----------EINKAGELLK 431 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh-----------hhhHHHHHHh
Confidence 2111 12222222222222 2211 011111111111111111111 1111234667
Q ss_pred cCChHHHHHHHhhcCCCCceehhhhh----h-Hhhc-CCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHH
Q 006955 282 MGEVGSAIKVFELMTTRDVTVWNVMI----F-GLGE-NDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGR 355 (624)
Q Consensus 282 ~g~~~~A~~~~~~~~~~~~~~~~~l~----~-~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 355 (624)
.|+++.|+++++-..+.|..+-.+.. . -|.+ -.++..|..+-+...... +-+....+.--+.....|++++|.
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHH
Confidence 78888888777777665443322211 1 1222 234555555554433221 222222222223334567888888
Q ss_pred HHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006955 356 QIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDF 432 (624)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 432 (624)
..+++.+...-......|| +.-.+...|++++|++.|-++. ..+....-.+...|-...++..|++++-+.... +
T Consensus 511 ~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 8888877765544455555 3445678899999999987765 556777777888898999999999999887763 4
Q ss_pred CCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHH
Q 006955 433 KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGA 512 (624)
Q Consensus 433 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (624)
+.|+..+..|...|-+.|+-..|.+.+-.--+- ++-+..+...|..-|....-+++|+..|++..- +.|+..-|..
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwql 664 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQL 664 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHH
Confidence 445578888899999999999999987765542 333899999999999999999999999998654 7999999999
Q ss_pred HHHHH-HhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006955 513 LLGAC-RIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGR 556 (624)
Q Consensus 513 l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 556 (624)
++..| .+.|++.+|..+|+...+..|.|...+..|.+.+...|.
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99887 568999999999999999999999999999999888775
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=6.7e-13 Score=133.05 Aligned_cols=522 Identities=14% Similarity=0.104 Sum_probs=350.0
Q ss_pred HHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCChhhHHHHHhcC---CCCCchhHHHHHHHHHhCCChhHHH
Q 006955 30 GYFKNGFLDNAMCLFNQMPE---RDMFTYNTVIAGLMQSDNVQGAKEVFDGM---EVRDVVTWNSMISGYVCNGLIDEAL 103 (624)
Q Consensus 30 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~ 103 (624)
.+...|++++|..++.++++ .....|..|...|-..|+.+.+...+-.. .+.|...|..+.......|++++|.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 34556999999999999983 45688999999999999999998765433 2667789999999999999999999
Q ss_pred HHhccCCCCCc---ccHHHHHHHHHcCCChHHHHHHHHhcccCCh----hHH----HHHHHHHHhCCChHHHHHHhccCC
Q 006955 104 RVFHGMPLKDV---VSWNLVIGALVNCQRMDLAESYFKEMGARDV----ASW----TIMVNGLVREGRIVEARKLFDKMP 172 (624)
Q Consensus 104 ~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~----~~l~~~~~~~g~~~~a~~~~~~~~ 172 (624)
-+|.+..+-++ ...-.-...|-+.|+...|..-+.++...++ .-+ -..++.+...++-+.|.+.++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999987333 2334445677889999999999999987433 222 334566777788899998887776
Q ss_pred C-----CChhHHHHHHHHHHHcCChhHHHHHHHHccc----C----------------------CcccHH----HHHHHH
Q 006955 173 A-----KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHD----R----------------------DLTSWK----QLINGL 217 (624)
Q Consensus 173 ~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----------------------~~~~~~----~l~~~~ 217 (624)
. -+...++.++..+.+...++.|...+..+.. + +..+|. -+.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 3 2556788999999999999999988877754 1 111111 122233
Q ss_pred HcC--CCHHHHHHHhhhCCC----CCcchHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHH
Q 006955 218 VNS--RRIDAAISYFKQMPE----TCEKTWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGS 287 (624)
Q Consensus 218 ~~~--~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 287 (624)
... +...+++.-+..-.. -+...|.-+..++...|.+.+|..++..+. -.+..+|-.+..+|...|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 333 333344333322222 234468888999999999999999999998 3446689999999999999999
Q ss_pred HHHHHhhcCCCCce---ehhhhhhHhhcCCCchHHHHHHHHhH--------HcCCCCCHHHHHHHHHHHcCCCCcHHHHH
Q 006955 288 AIKVFELMTTRDVT---VWNVMIFGLGENDLGEEGLKFFVQMK--------ESGPSPDNATFTSVLTICSDLPTLDLGRQ 356 (624)
Q Consensus 288 A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 356 (624)
|.+.|+.+...++. .--.|...+.+.|++++|++.+..+. ..+..|+..........+...|+.++-..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999998765443 44456667889999999999999864 22345555555566667777888776554
Q ss_pred HHHHHHHhC----------------------CCCCcchhHHHHHHhHhhCCHHHHHHHhccCC--------CCCc----h
Q 006955 357 IHAQAIKIA----------------------RNQFTTVSNAMITMYARCGNIQSALLEFSSVP--------IHDI----I 402 (624)
Q Consensus 357 ~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~----~ 402 (624)
+...|+... .+........++.+-.+.++......-...-. .-++ .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 444443311 11111112223333333333332222221110 1111 2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCh-h-hH-HHHHHHhcccChHHHHHHHHHHhhhhcCCC--C-Ccch
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFK--PDD-I-TF-VGVLSACSYAGLVDQGRYYFDCMKNKYFLQ--P-RSAH 474 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~-~-~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~ 474 (624)
.+.-++.++++.+++++|+.+...+...... ++. . .+ ...+.++...+++..|...++.+....+.. | -...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3344667888999999999999988875322 222 1 22 344557788899999999999998763322 2 2445
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHH--HHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL--GACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
|+...+...+.|+-.--.+.+..... ..|+......++ .-....+.+.-|...+-++...+|.+|.+-.+++-++.
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 55455555555554444444444332 233332222233 33467889999999999999999988887777776655
Q ss_pred h
Q 006955 553 S 553 (624)
Q Consensus 553 ~ 553 (624)
+
T Consensus 786 h 786 (895)
T KOG2076|consen 786 H 786 (895)
T ss_pred H
Confidence 4
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=2e-16 Score=149.71 Aligned_cols=257 Identities=16% Similarity=0.127 Sum_probs=117.5
Q ss_pred hhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHH-HHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCC
Q 006955 307 IFGLGENDLGEEGLKFFVQMKESGPSPDNATFTS-VLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN 385 (624)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (624)
...+.+.|++++|++++++......+|+...|-. +...+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4455666777777777755443322344444433 333445566777777777777665433 45556666666 68888
Q ss_pred HHHHHHHhccCC--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHhcccChHHHHHHHHHHh
Q 006955 386 IQSALLEFSSVP--IHDIISWNSIICGLAYHGYAEKALELFERMRLTD-FKPDDITFVGVLSACSYAGLVDQGRYYFDCM 462 (624)
Q Consensus 386 ~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 462 (624)
+++|..+++... .+++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888877654 4566778888889999999999999999987643 3456677888888999999999999999999
Q ss_pred hhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 463 KNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 463 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
.+. .| |+.....++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|...++++.+..|.|+
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 984 57 68889999999999999999999998877643 55777889999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.....++.++...|+.++|.++..+...
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999877643
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=1.4e-11 Score=119.17 Aligned_cols=472 Identities=11% Similarity=0.086 Sum_probs=366.8
Q ss_pred cCCChhhHHHHHhcCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCChHHHHHHH
Q 006955 64 QSDNVQGAKEVFDGME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL---KDVVSWNLVIGALVNCQRMDLAESYF 137 (624)
Q Consensus 64 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 137 (624)
...+.++|+-++.+.. +.... |..++.+..-|+.|.+++++.++ .++..|.+-...--.+|+.+...+++
T Consensus 388 elE~~~darilL~rAveccp~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECCPQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred hccChHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 3445566666666654 22333 34455666778888888888875 47778888888888899999999998
Q ss_pred Hhccc--------CChhHHHHHHHHHHhCCChHHHHHHhccCCC------CChhHHHHHHHHHHHcCChhHHHHHHHHcc
Q 006955 138 KEMGA--------RDVASWTIMVNGLVREGRIVEARKLFDKMPA------KDVQAWNLMIAGYLDNGCVGVAEDLFQKMH 203 (624)
Q Consensus 138 ~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 203 (624)
.+... -+...|..=...|-..|..-.+..+...+.. .-..+|..-...|.+.+.++-|..+|....
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 87753 2556666666777777777777777665552 234688888999999999999999998887
Q ss_pred cC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhH
Q 006955 204 DR---DLTSWKQLINGLVNSRRIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTN 274 (624)
Q Consensus 204 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ 274 (624)
+- +...|...+..--..|..+.-..+|++... | .+..|..........|+...|..++..+. +.+..+|-+
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 73 334577777666778999999999998876 3 33356666677788899999999998887 666778999
Q ss_pred HHHHHHhcCChHHHHHHHhhcCC--CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCH-HHHHHHHHHHcCCCCc
Q 006955 275 VIVGYFEMGEVGSAIKVFELMTT--RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDN-ATFTSVLTICSDLPTL 351 (624)
Q Consensus 275 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~ 351 (624)
-+..-.....++.|..+|.+... ++...|.--+..---.+..++|++++++..+. -|+- ..|..+...+.+.+++
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH
Confidence 99999999999999999998764 46667776666667788999999999888775 6664 4556666677788888
Q ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 006955 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMR 428 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 428 (624)
+.|...|..-.+ .+|..+..+-.|...--+.|.+-+|..++++.. +.+...|-..|..-.+.|+.+.|..++.+..
T Consensus 702 e~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 702 EMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887765444 246677788888888889999999999999876 4477899999999999999999999999988
Q ss_pred HCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-H
Q 006955 429 LTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-P 507 (624)
Q Consensus 429 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~ 507 (624)
+. ++.+...|..-|...-+.++-......+++ ..-|+...-.+...+....++++|.+.|.+... ..|| .
T Consensus 781 Qe-cp~sg~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~G 851 (913)
T KOG0495|consen 781 QE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNG 851 (913)
T ss_pred Hh-CCccchhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccc
Confidence 75 555667888878777777775555554443 345777788888888899999999999999987 4454 5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
.+|..+...+..+|.-+.-.+++.+.....|.....+....+--
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence 68888999999999999999999999999998887777766543
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=3.8e-14 Score=130.54 Aligned_cols=115 Identities=10% Similarity=0.103 Sum_probs=64.6
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC----CCc-chHHHHHHHHHcCCChhhHHHHHhcCC--CC------CchhHHHHHHHH
Q 006955 27 MIRGYFKNGFLDNAMCLFNQMPE----RDM-FTYNTVIAGLMQSDNVQGAKEVFDGME--VR------DVVTWNSMISGY 93 (624)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~------~~~~~~~l~~~~ 93 (624)
|.+.|..+....+|+..|+-+.+ |+. ..--.+.+.+.+...+..|++.|+... .| .+.+.+.+...+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 44455555666667766666552 221 111122334555666667776665443 12 123455555566
Q ss_pred HhCCChhHHHHHhccCCC--CCcccHHHHHHHHHcCCChHHHHHHHHhcc
Q 006955 94 VCNGLIDEALRVFHGMPL--KDVVSWNLVIGALVNCQRMDLAESYFKEMG 141 (624)
Q Consensus 94 ~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (624)
.+.|+++.|+..|+...+ |+..+-..|+-++..-|+.++..+.|..|.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli 336 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLI 336 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHh
Confidence 677777777777776654 665554445555555667777777776665
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=9.5e-13 Score=122.81 Aligned_cols=214 Identities=16% Similarity=0.155 Sum_probs=164.0
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHH
Q 006955 347 DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
-.|+.-.+..-|+.+++....++. .|-.+..+|....+.++....|++.. +.++.+|..-.+.+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 346666677777766665443332 24445666777777777777777665 44667787777888888889999999
Q ss_pred HHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCC
Q 006955 424 FERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG 502 (624)
Q Consensus 424 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (624)
|++... +.|+. ..|.-+.-+..+.+.++++...|++.+++ ++..+..|+.....+...++++.|.+.|+..++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 999887 56654 45666666667788999999999999986 444788999999999999999999999998776
Q ss_pred CCcC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 503 IEVS---------PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 503 ~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
+.|+ +.+...++..- -.+|+..|+.+++++++++|.....|..|+....++|+.++|+++|++..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3443 33333333322 34999999999999999999999999999999999999999999998754
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=4.2e-12 Score=116.53 Aligned_cols=378 Identities=14% Similarity=0.125 Sum_probs=235.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHcccCCccc-------HHHHHHHHHcCCCHHHHHHHhhhCCC---CCcchHHHHH
Q 006955 176 VQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTS-------WKQLINGLVNSRRIDAAISYFKQMPE---TCEKTWNSII 245 (624)
Q Consensus 176 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll 245 (624)
+.+-+.|+.. ...|.++++.-+|+.|...++.+ .--|+..|-.++-+-.-++.|-.|.. .+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 3445555543 45678888888888888765542 22222233333333333445555543 122222
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCC----CceehhhhhhHhhcCCCchHHHH
Q 006955 246 SVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTR----DVTVWNVMIFGLGENDLGEEGLK 321 (624)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~ 321 (624)
+.|++.+ ++-+..+....++..||.+.|+--..+.|..++++.... +..+||.+|.+-. +..-.+
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHH
Confidence 2333322 566666788888888888888888888888888877653 4556666665532 223367
Q ss_pred HHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHH----HHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHH-HHHHhccC
Q 006955 322 FFVQMKESGPSPDNATFTSVLTICSDLPTLDLG----RQIHAQAIKIARNQFTTVSNAMITMYARCGNIQS-ALLEFSSV 396 (624)
Q Consensus 322 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~ 396 (624)
++.+|....++||..||++++.+..+.|+++.+ .+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 888888888899999999999988888876654 4667788888999999888888888888877754 33333322
Q ss_pred C------------CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCh---hhHHHHHHHhcccChHHHHHH
Q 006955 397 P------------IHDIISWNSIICGLAYHGYAEKALELFERMRLT----DFKPDD---ITFVGVLSACSYAGLVDQGRY 457 (624)
Q Consensus 397 ~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~---~~~~~ll~~~~~~g~~~~a~~ 457 (624)
. +.|...|...+..|.+..+.+-|.++-.-+... -+.|+. .-|..+....++....+.-..
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~ 419 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK 419 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 223445666677777777777777765554431 133332 234455566677777777777
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC----------------
Q 006955 458 YFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN---------------- 521 (624)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---------------- 521 (624)
.++.+.-.. +-|+..+...+.++..-.|.++-.-+++..++..|..-+.....-++...+...
T Consensus 420 ~Y~~lVP~~-y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 420 WYEDLVPSA-YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred HHHHhccce-ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 777776542 456777777788887788888888888877777664333333322222222211
Q ss_pred ----ChHHHHH-HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 522 ----NIKVGEI-AGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 522 ----~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.++.+ .-+++. .....+......+-.+.+.|+.++|-+++.-+.+.+
T Consensus 499 k~aad~~e~~e~~~~R~r-~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 499 KCAADIKEAYESQPIRQR-AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHHHHHHhhHHHHH-hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 1111111 111222 122245667778888889999999999988886555
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=1.7e-11 Score=112.67 Aligned_cols=429 Identities=14% Similarity=0.099 Sum_probs=247.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCC----cchHHHHHHH--HHcCCChhhH-HHHHhcCC---CCCchhHHHHHHH
Q 006955 23 TWNVMIRGYFKNGFLDNAMCLFNQMPERD----MFTYNTVIAG--LMQSDNVQGA-KEVFDGME---VRDVVTWNSMISG 92 (624)
Q Consensus 23 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~--~~~~~~~~~A-~~~~~~~~---~~~~~~~~~l~~~ 92 (624)
+=+.|++.. .+|.+.++--+|+.|.+.+ +..-..|.+. |....++.-| .+.|-.|. +....+|
T Consensus 118 ~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------ 190 (625)
T KOG4422|consen 118 TENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------ 190 (625)
T ss_pred chhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc------
Confidence 444455443 5677888888888888432 2223333332 2233333222 23343444 2222222
Q ss_pred HHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc----CChhHHHHHHHHHHhCCChHHHHHHh
Q 006955 93 YVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA----RDVASWTIMVNGLVREGRIVEARKLF 168 (624)
Q Consensus 93 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~ 168 (624)
+.|...+ ++-+.....+.++..+|.++++.-..++|.+++++... -+..+||.+|.+-.-..+ .+++
T Consensus 191 --K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv 261 (625)
T KOG4422|consen 191 --KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLV 261 (625)
T ss_pred --ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHH
Confidence 2333332 45555556778899999999999999999999988764 377888888876544333 4444
Q ss_pred ccCC----CCChhHHHHHHHHHHHcCChhHHH----HHHHHccc----CCcccHHHHHHHHHcCCCHHH-HHHHhhhCCC
Q 006955 169 DKMP----AKDVQAWNLMIAGYLDNGCVGVAE----DLFQKMHD----RDLTSWKQLINGLVNSRRIDA-AISYFKQMPE 235 (624)
Q Consensus 169 ~~~~----~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~ 235 (624)
.+|. .||..|+|+++.+..+.|+++.|. +++.+|++ +...+|..+|..+.+-++..+ |..++.++..
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 4443 689999999999999999887654 45555554 344467777777666665533 3333333321
Q ss_pred ------------CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceeh
Q 006955 236 ------------TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVW 303 (624)
Q Consensus 236 ------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 303 (624)
.|..-|...++.|.+..+.+-|.++..-+...+. ++..-..+ ....-|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N---------------~~~ig~~~-----~~~fYy 401 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN---------------WKFIGPDQ-----HRNFYY 401 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc---------------hhhcChHH-----HHHHHH
Confidence 1333566666666666666666665433221100 00000000 012335
Q ss_pred hhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh
Q 006955 304 NVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC 383 (624)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (624)
..+....|+....+..+..|+.|.-.-+-|+..+...++++....+.++...++|.++...|..........++..+++.
T Consensus 402 r~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 402 RKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 56667778888889999999999888888999999999999999999999999999998887654443333333333322
Q ss_pred CCHHHHHHHhccCCCCCch---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 384 GNIQSALLEFSSVPIHDII---SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
. ..|+.. -+.....-|+ ..-.+.....-.+|++. .-.....+.++..+.+.|..++|.+++.
T Consensus 482 k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~ 546 (625)
T KOG4422|consen 482 K------------LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLG 546 (625)
T ss_pred C------------CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHH
Confidence 1 011111 1111111111 01112222233445543 3333445555556677777777777777
Q ss_pred HhhhhcCCCCCcchHH---HHHHHhhccCChHHHHHHHHHcccCC
Q 006955 461 CMKNKYFLQPRSAHYT---CVVDLLGRFGLIDEAMNLLNEIRADG 502 (624)
Q Consensus 461 ~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (624)
.+.+.+.-.|.....+ -+++.-.+.++...|..+++-|...+
T Consensus 547 l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 547 LFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 7755444444444444 34444455666777777776665543
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.8e-11 Score=113.93 Aligned_cols=514 Identities=14% Similarity=0.129 Sum_probs=308.3
Q ss_pred HcCCChhhHHHHHhcCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCC--CCcc-cHHHHHHHHHcCCChHHHHHH
Q 006955 63 MQSDNVQGAKEVFDGME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL--KDVV-SWNLVIGALVNCQRMDLAESY 136 (624)
Q Consensus 63 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~ 136 (624)
-.++++..|.++|+... .++...|-..+.+-.++...+.|..++++... |-+. .|--.+-.--..|++..|.++
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 34556666666666655 34555555666666666666666666666653 3332 222222223345666677777
Q ss_pred HHhccc--CChhHHHHHHHHHHhCCChHHHHHHhccCC--CCChhHHHHHHHHHHHcCChhHHHHHHHHcccC--Cc---
Q 006955 137 FKEMGA--RDVASWTIMVNGLVREGRIVEARKLFDKMP--AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR--DL--- 207 (624)
Q Consensus 137 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--- 207 (624)
|++-.+ |+...|++.|+.-.+-+.++.|..+++... .|++.+|--....-.++|++..|..+|+...+. |.
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 666653 666667777766666666777777666654 566666666666666666666666666665541 11
Q ss_pred -ccHHHHHHHHHcCCCHHHHHHHhhhCCC--CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCC
Q 006955 208 -TSWKQLINGLVNSRRIDAAISYFKQMPE--TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGE 284 (624)
Q Consensus 208 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (624)
..+.++...=.++..++.|.-+|+-..+ |...+ ...|..+...--+-|+
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra----------------------------eeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA----------------------------EELYKKYTAFEKQFGD 295 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH----------------------------HHHHHHHHHHHHHhcc
Confidence 1222222222334444444444443332 11110 1122222222222233
Q ss_pred hH---HHHH-----HHhhcCCC---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCH-------HHHHHHHHHH-
Q 006955 285 VG---SAIK-----VFELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDN-------ATFTSVLTIC- 345 (624)
Q Consensus 285 ~~---~A~~-----~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~- 345 (624)
.. +++- -++..... |-.+|-..+..-...|+.+...++|++.... ++|-. ..|.-+=-+|
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHH
Confidence 22 2211 12222233 3344555555556678888888888887764 45532 1222222222
Q ss_pred --cCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHh----HhhCCHHHHHHHhccCC--CCCchhHHHHHHHHHHcCCh
Q 006955 346 --SDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMY----ARCGNIQSALLEFSSVP--IHDIISWNSIICGLAYHGYA 417 (624)
Q Consensus 346 --~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 417 (624)
....+++.+.++++..++ -+|....++..+=-+| .++.++..|.+++.... -|...+|...|..-.+.+++
T Consensus 375 eEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF 453 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH
Confidence 356788889999988888 4666677776554444 46789999999998876 46667788888888899999
Q ss_pred HHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHH
Q 006955 418 EKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 418 ~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
+.+..++++..+ ..| |..+|......-...|+.+.|..+|.-+.....+.-....|...|+.-...|.++.|..+++
T Consensus 454 DRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 454 DRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 999999999998 455 45788888877788899999999999988764333345667788888889999999999999
Q ss_pred HcccCCCCcCHHHHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHcc----CCCCC--chHHHHHHHHHhc
Q 006955 497 EIRADGIEVSPTVWGALLGACR-----IHN-----------NIKVGEIAGERVMEL----EPNNS--GVYLILTEMYLSC 554 (624)
Q Consensus 497 ~~~~~g~~p~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~ 554 (624)
++++. .+...+|-++..--. ..| +...|..+|+++... .|... ..+..+-+.-...
T Consensus 532 rlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~ 609 (677)
T KOG1915|consen 532 RLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETF 609 (677)
T ss_pred HHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc
Confidence 99873 555557777664322 334 567888899988763 23111 1233333334455
Q ss_pred CChHHHHHHHHHHHH----C-CCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHH
Q 006955 555 GRREDAKRIFAQMKE----N-GVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHT 612 (624)
Q Consensus 555 g~~~~A~~~~~~m~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (624)
|...+...+-..|.+ . .+....|+ .+.++.+..++-.+-+.|.-.++...-..|.+
T Consensus 610 G~~~d~~~V~s~mPk~vKKrr~~~~edG~--~~~EEy~DYiFPed~~~~~~~K~LeaA~kWK~ 670 (677)
T KOG1915|consen 610 GTEGDVERVQSKMPKKVKKRRKIQREDGD--TEYEEYFDYIFPEDASATKNLKILEAAKKWKK 670 (677)
T ss_pred CchhhHHHHHHhccHHHHhhhhhhcccCc--hhHHHHHHhcCccccccCcchHHHHHHHHHHH
Confidence 655555555555532 1 12233441 22334445556666677777777665555444
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.2e-12 Score=117.83 Aligned_cols=326 Identities=11% Similarity=0.007 Sum_probs=232.2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCcee-hhhhhhHhhcCC
Q 006955 236 TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTV-WNVMIFGLGEND 314 (624)
Q Consensus 236 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~ 314 (624)
.|+..+....-.+.+.|....|...|......-+..|.+-+....-..+.+.+..+...+...+.-. --.+..++....
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 3433344444455566777777777766664445555554444333344444433333333221110 112334555566
Q ss_pred CchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC--CCcchhHHHHHHhHhhCCHH-HHHH
Q 006955 315 LGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARN--QFTTVSNAMITMYARCGNIQ-SALL 391 (624)
Q Consensus 315 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~-~A~~ 391 (624)
+.+++..-.......|.+-+...-+....+.-...++++|..+|+++.+..+- .|..+|+-++-.-....++. -|..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 77888888877777775555444444444556778899999999999887321 24555655443322222221 1222
Q ss_pred HhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC
Q 006955 392 EFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP 470 (624)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 470 (624)
++ .+.+-.+.|..++.+-|+-.++.++|...|++..+ +.|.. ..|+.+..-|....+...|++-++.+.+ +.|
T Consensus 322 v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p 395 (559)
T KOG1155|consen 322 VS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INP 395 (559)
T ss_pred HH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCc
Confidence 22 22233566788888999999999999999999988 56665 5777777889999999999999999987 667
Q ss_pred -CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 471 -RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 471 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
|-..|-.|..+|.-.+...-|+-.|++... ++| |+..|.+|..+|.+.++.++|++.|.++......+..++..|+
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 889999999999999999999999999988 455 7899999999999999999999999999998887889999999
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 006955 549 EMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 549 ~~~~~~g~~~~A~~~~~~m~~ 569 (624)
+.|.+.++.++|...+++-.+
T Consensus 474 kLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999987755
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=1.5e-12 Score=129.12 Aligned_cols=277 Identities=11% Similarity=0.029 Sum_probs=192.7
Q ss_pred cCChHHHHHHHhhcCCC--Ccee-hhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHH--HHHHHHcCCCCcHHHHH
Q 006955 282 MGEVGSAIKVFELMTTR--DVTV-WNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFT--SVLTICSDLPTLDLGRQ 356 (624)
Q Consensus 282 ~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 356 (624)
.|+++.|.+.+...... ++.. |........+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46677776666655432 1222 222233346777777888887777654 45543332 22456667778888888
Q ss_pred HHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCC---c--------hhHHHHHHHHHHcCChHHHHHHHH
Q 006955 357 IHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHD---I--------ISWNSIICGLAYHGYAEKALELFE 425 (624)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~--------~~~~~l~~~~~~~~~~~~a~~~~~ 425 (624)
.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777776665 4456666777888888888888887777666221 1 123333444444556667777777
Q ss_pred HHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc
Q 006955 426 RMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV 505 (624)
Q Consensus 426 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 505 (624)
.+.+. .+.+......+..++...|+.++|.+++++..+. +|++... ++.+....++.+++.+.+++..+.. +-
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 76543 3456677888888999999999999999888763 3555322 2334445689999999999988642 34
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 506 SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
|+..+..+...|...|++++|...|+++.+..| +...+..|+.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566788888999999999999999999999999 667788999999999999999999987654
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.4e-11 Score=114.39 Aligned_cols=341 Identities=13% Similarity=0.148 Sum_probs=228.2
Q ss_pred HHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhh---HHHHHHHhcCChHHHHHHH
Q 006955 216 GLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWT---NVIVGYFEMGEVGSAIKVF 292 (624)
Q Consensus 216 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~ 292 (624)
.+.+.|....|++.|......-+..|.+-+....-..+.+.+..+...+ +.+ ..|. -+..++-.....+++..-.
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l-~~~-~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGL-PSD-MHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcC-ccc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665555444444444443333333333322222111 111 1111 1333444445555555544
Q ss_pred hhcCCC----CceehhhhhhHhhcCCCchHHHHHHHHhHHcCC-C-CCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Q 006955 293 ELMTTR----DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGP-S-PDNATFTSVLTICSDLPTLDLGRQIHAQAIKIAR 366 (624)
Q Consensus 293 ~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 366 (624)
...... +...-+....+...+.++++|+.+|+++.+... + -|..+|..++-.-..... ..++.+-.-.--
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk----Ls~LA~~v~~id 326 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK----LSYLAQNVSNID 326 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----HHHHHHHHHHhc
Confidence 444332 111122233345566788888888888887631 1 234566666544322211 222222222223
Q ss_pred CCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHH
Q 006955 367 NQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP-DDITFVGV 442 (624)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 442 (624)
+-.+.++..+.+.|.-.++.++|...|++.. +.....|+.|..-|....+...|.+-++...+ +.| |-..|-.+
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGL 404 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGL 404 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhh
Confidence 4455667778888888999999999999877 33456899999999999999999999999988 445 55799999
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN 521 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 521 (624)
.++|.-.+...=|.-+|+++.+ +.| |+..|..|.++|.+.++.++|++.|.+....| ..+...+..|...|-..+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELK 480 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHH
Confidence 9999999999999999999887 567 89999999999999999999999999998766 446678899999999999
Q ss_pred ChHHHHHHHHHHHc-------cCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 522 NIKVGEIAGERVME-------LEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 522 ~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
+.++|...+++.++ ..|....+...|+.-+.+.+++++|..+.....
T Consensus 481 d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 99999999999887 334444556668888889999999988765443
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.3e-10 Score=108.41 Aligned_cols=453 Identities=12% Similarity=0.103 Sum_probs=295.5
Q ss_pred chhHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCChHHHHHHHHhccc--CCh-hHHHHHHHHHH
Q 006955 83 VVTWNSMISGYVCNGLIDEALRVFHGMPL---KDVVSWNLVIGALVNCQRMDLAESYFKEMGA--RDV-ASWTIMVNGLV 156 (624)
Q Consensus 83 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~ 156 (624)
...|--...--..++++..|..+|++.+. .+...|...+..-.+++++..|.-++++.+. |-+ ..|--.+.+--
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34444444444566777788888887775 4555666667777778888888888877765 322 23344444555
Q ss_pred hCCChHHHHHHhccCC--CCChhHHHHHHHHHHHcCChhHHHHHHHHccc--CCcccHHHHHHHHHcCCCHHHHHHHhhh
Q 006955 157 REGRIVEARKLFDKMP--AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHD--RDLTSWKQLINGLVNSRRIDAAISYFKQ 232 (624)
Q Consensus 157 ~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (624)
..|++..|.++|+... +|+..+|.+.|..-.+-..++.|..++++..- +++.+|--....=.+.|++..|..++..
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 6778888888887776 57778888888887777888888888877652 4444444444444455555555555444
Q ss_pred CCC--CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCC----C-Cceehhh
Q 006955 233 MPE--TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTT----R-DVTVWNV 305 (624)
Q Consensus 233 ~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~ 305 (624)
..+ .|.. .+...+.+....-.++..++.|.-+|+-..+ . ....|..
T Consensus 233 Aie~~~~d~---------------------------~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~ 285 (677)
T KOG1915|consen 233 AIEFLGDDE---------------------------EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKK 285 (677)
T ss_pred HHHHhhhHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 332 1111 1111233333333445556666666654432 1 1223333
Q ss_pred hhhHhhcCCCchHHHHH--------HHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcc------
Q 006955 306 MIFGLGENDLGEEGLKF--------FVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT------ 371 (624)
Q Consensus 306 l~~~~~~~~~~~~a~~~--------~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------ 371 (624)
....=-+-|+.....+. |+.+.+.+ +.|-.++--.+......|+.+...+++..++..-.+.+..
T Consensus 286 ~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RY 364 (677)
T KOG1915|consen 286 YTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRY 364 (677)
T ss_pred HHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHH
Confidence 33322233443333222 33344432 4555677777788888899999999999988754333221
Q ss_pred hhH---HHHHHhHhhCCHHHHHHHhccCC---CCCchhHHH----HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 006955 372 VSN---AMITMYARCGNIQSALLEFSSVP---IHDIISWNS----IICGLAYHGYAEKALELFERMRLTDFKPDDITFVG 441 (624)
Q Consensus 372 ~~~---~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 441 (624)
+|- -.+-.-....+.+.+.++++... +....||.. ....-.++.+...|.+++.... |.-|...+|..
T Consensus 365 IYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~ 442 (677)
T KOG1915|consen 365 IYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKG 442 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHH
Confidence 111 11222234678888888887654 444444444 4444567889999999998875 57899999999
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCC-CCcCHHHHHHHHHHHHh
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG-IEVSPTVWGALLGACRI 519 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~ 519 (624)
.|..-.+.+++|.+..++++..+ ..| +..+|......-...|+.+.|..+|.-+++.. +......|.+.|.--..
T Consensus 443 YIelElqL~efDRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~ 519 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh
Confidence 99999999999999999999997 567 78889999998899999999999999988532 11123466666766678
Q ss_pred cCChHHHHHHHHHHHccCCCCCchHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHH
Q 006955 520 HNNIKVGEIAGERVMELEPNNSGVYLILTEMYL-----SCG-----------RREDAKRIFAQMKE 569 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~ 569 (624)
.|.++.|..+++++++..+ ...++...+..-. ..| ....|..+|++...
T Consensus 520 ~~E~ekaR~LYerlL~rt~-h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 520 EGEFEKARALYERLLDRTQ-HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cchHHHHHHHHHHHHHhcc-cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 9999999999999999888 5557777766544 334 56678888887654
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=5.5e-14 Score=133.12 Aligned_cols=252 Identities=12% Similarity=0.093 Sum_probs=110.3
Q ss_pred HHHHHHhcCChHHHHHHHhhc-C----CCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCC
Q 006955 275 VIVGYFEMGEVGSAIKVFELM-T----TRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLP 349 (624)
Q Consensus 275 l~~~~~~~g~~~~A~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 349 (624)
+...+.+.|++++|+++++.. . ..++..|..+...+...++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 345566666667776666432 1 124455555555666667777777777777655322 33444444444 5667
Q ss_pred CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC-----CCCchhHHHHHHHHHHcCChHHHHHHH
Q 006955 350 TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP-----IHDIISWNSIICGLAYHGYAEKALELF 424 (624)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~ 424 (624)
++++|..++....+.. +++..+..++..+.+.++++++..+++.+. ++++..|..+...+.+.|++++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777766554432 345555667777888888888888777643 346678888899999999999999999
Q ss_pred HHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCC
Q 006955 425 ERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGI 503 (624)
Q Consensus 425 ~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (624)
++..+ ..|+ ......++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|..++++.....
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 99998 4675 567888999999999999999999998875 34578888999999999999999999999988742
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 504 EVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
+.|+.+...+..++...|+.++|..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 44788889999999999999999999888765
No 43
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=1.2e-09 Score=105.84 Aligned_cols=521 Identities=11% Similarity=0.137 Sum_probs=279.1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHh
Q 006955 21 TVTWNVMIRGYFKNGFLDNAMCLFNQMPE-----RDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVC 95 (624)
Q Consensus 21 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 95 (624)
+..|-..++.+.++|++..-+..|+.... ....+|...+.-....+-++-+.+++++..+-++..-+-.+..+..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 35566666666677776666666665541 2335566666666666666667777766665555556666666666
Q ss_pred CCChhHHHHHhccCCC----------CCcccHHHHHHHHHcCC---ChHHHHHHHHhcccC--C--hhHHHHHHHHHHhC
Q 006955 96 NGLIDEALRVFHGMPL----------KDVVSWNLVIGALVNCQ---RMDLAESYFKEMGAR--D--VASWTIMVNGLVRE 158 (624)
Q Consensus 96 ~g~~~~a~~~~~~~~~----------~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~--~--~~~~~~l~~~~~~~ 158 (624)
.+++++|-+.+..... .+-..|..+-...++.- .--....+++.+... | ...|.+|.+-|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 6677666666665552 12223444433333321 122233444554442 2 24566666667777
Q ss_pred CChHHHHHHhccCCCC--ChhHHHHHHHHHHHc----------------C------ChhHHHHHHHHcccCC--------
Q 006955 159 GRIVEARKLFDKMPAK--DVQAWNLMIAGYLDN----------------G------CVGVAEDLFQKMHDRD-------- 206 (624)
Q Consensus 159 g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~----------------g------~~~~A~~~~~~~~~~~-------- 206 (624)
|++++|..++++.... .+.-++.+-+.|++- | +++-...-|+.+....
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 7777777766665432 222222222222211 1 1111222222222211
Q ss_pred -------cccHHHHHHHHHcCCCHHHHHHHhhhCC-------CCCc--chHHHHHHHHHhcCChHHHHHHHhhcCCCCcc
Q 006955 207 -------LTSWKQLINGLVNSRRIDAAISYFKQMP-------ETCE--KTWNSIISVLIRNGLVKEAHSYLEKYPYSNIA 270 (624)
Q Consensus 207 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (624)
+..|..-+. +..|+..+-...+.+.. .+.. ..|..+.+.|-..|+++.|..+|++....+-.
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 111111111 11233333333333222 1111 13555666666666666666666666644433
Q ss_pred hhhHHHHHHH-------hcCChHHHHHHHhhcCC-CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHH
Q 006955 271 SWTNVIVGYF-------EMGEVGSAIKVFELMTT-RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVL 342 (624)
Q Consensus 271 ~~~~l~~~~~-------~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 342 (624)
...-|...++ +..+++.|+++.++... |.... ..+...+.+-++. + .-+...|...+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~~pvQ~r-l---------hrSlkiWs~y~ 484 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----LEYYDNSEPVQAR-L---------HRSLKIWSMYA 484 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----hhhhcCCCcHHHH-H---------HHhHHHHHHHH
Confidence 3333333333 33344555555444321 11100 1111111111110 0 11222344444
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC----CCCc-hhHHHHHHHHHH---c
Q 006955 343 TICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP----IHDI-ISWNSIICGLAY---H 414 (624)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~l~~~~~~---~ 414 (624)
..-...|-++..+.+++.+.+..+-....+.| ....+-...-++++.+++++-. .|++ ..|+..+.-+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 44455678888888888888876654433333 2333445556788889988766 3443 367776655443 2
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHH--HHhcccChHHHHHHHHHHhhhhcCCCC--CcchHHHHHHHhhccCChHH
Q 006955 415 GYAEKALELFERMRLTDFKPDDITFVGVL--SACSYAGLVDQGRYYFDCMKNKYFLQP--RSAHYTCVVDLLGRFGLIDE 490 (624)
Q Consensus 415 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 490 (624)
...+.|..+|++..+ |.+|...-+..|+ ..-.+.|....|..+++++... +.+ -...|+..|.--...=-...
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~--v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA--VKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 378999999999998 6777664333333 2234458888999999998763 555 35678877765544444555
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHH---HHHHhcCChHHHHHHHHHHHccCCC--CCchHHHHHHHHHhcCChHHHHHHH
Q 006955 491 AMNLLNEIRADGIEVSPTVWGALL---GACRIHNNIKVGEIAGERVMELEPN--NSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
-..+|+++++. -|+...-..-+ ..-.+.|..++|..++.-..++-|+ +...+...=..-.++|+-+...+.+
T Consensus 641 TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 641 TREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred cHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 66777777763 45544433333 2336789999999999988886543 4556788888888999955444443
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=1.9e-11 Score=121.23 Aligned_cols=281 Identities=9% Similarity=-0.064 Sum_probs=186.6
Q ss_pred CCCHHHHHHHhhhCCCC--CcchHHH-HHHHHHhcCChHHHHHHHhhcC--CCCcchhh--HHHHHHHhcCChHHHHHHH
Q 006955 220 SRRIDAAISYFKQMPET--CEKTWNS-IISVLIRNGLVKEAHSYLEKYP--YSNIASWT--NVIVGYFEMGEVGSAIKVF 292 (624)
Q Consensus 220 ~~~~~~A~~~~~~~~~~--~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~--~l~~~~~~~g~~~~A~~~~ 292 (624)
.|++++|.+.+....+. ++..+.. ...+..+.|+.+.+...+.++. .|+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 57777777777665442 2222222 2334466677777777776666 22322222 2244566666666666666
Q ss_pred hhcCCC---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCC
Q 006955 293 ELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQF 369 (624)
Q Consensus 293 ~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 369 (624)
+...+. ++.....+...|.+.|++++|.+++..+.+.+..++. .+..+-.
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~-------------------------- 229 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ-------------------------- 229 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH--------------------------
Confidence 665432 3445556666666666666666666666665433211 1110000
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
..+..++.......+.+...++++.++ +.++.....+..++...|+.++|..++++..+. .|+.... ++.+.
T Consensus 230 -~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~ 304 (398)
T PRK10747 230 -QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPR 304 (398)
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhh
Confidence 011112222233344556666666665 457778888999999999999999999999873 5555322 23344
Q ss_pred cccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKV 525 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 525 (624)
...++.+++.+..+...+. .| |+..+..+...+.+.|++++|.+.|+.+.+ ..|+...+..+..++...|+.++
T Consensus 305 l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred ccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHH
Confidence 4569999999999998875 36 677788999999999999999999999987 67999999999999999999999
Q ss_pred HHHHHHHHHccC
Q 006955 526 GEIAGERVMELE 537 (624)
Q Consensus 526 a~~~~~~~~~~~ 537 (624)
|..++++.+.+.
T Consensus 380 A~~~~~~~l~~~ 391 (398)
T PRK10747 380 AAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhhh
Confidence 999999998744
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6.3e-11 Score=113.04 Aligned_cols=261 Identities=12% Similarity=0.008 Sum_probs=200.3
Q ss_pred hhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh
Q 006955 304 NVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC 383 (624)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (624)
.....-+...+++.+..++.+...+.. ++....+..=|.++...|+..+-..+=..+.+. .|..+.++-++...|.-.
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 334445667788888888888877653 445555555555667777766666555566554 455566677788888888
Q ss_pred CCHHHHHHHhccCCCC---CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHH
Q 006955 384 GNIQSALLEFSSVPIH---DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYF 459 (624)
Q Consensus 384 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 459 (624)
|+.++|.+.|.+...- -...|-....+|+..+..+.|+..+...-+. -|. ...+..+..-|.+.++.+.|.++|
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999887632 2357999999999999999999999888763 332 234445556788899999999999
Q ss_pred HHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC--CCCc----CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006955 460 DCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD--GIEV----SPTVWGALLGACRIHNNIKVGEIAGER 532 (624)
Q Consensus 460 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 532 (624)
..+.. +.| |+..++-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|..+|.+.+.+++|+..+++
T Consensus 404 ~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 98875 667 7888888888888899999999999886521 0111 234678888999999999999999999
Q ss_pred HHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 533 VMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 533 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.+.|.++.++..++.+|...|+++.|.+.|.+.+...
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998876543
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3.5e-12 Score=124.02 Aligned_cols=276 Identities=13% Similarity=0.080 Sum_probs=156.4
Q ss_pred ChHHHHHHHhhcCCC--Cc-eehhhhhhHhhcCCCchHHHHHHHHhHHcC-C-CCCHHHHHHHHHHHcCCCCcHHHHHHH
Q 006955 284 EVGSAIKVFELMTTR--DV-TVWNVMIFGLGENDLGEEGLKFFVQMKESG-P-SPDNATFTSVLTICSDLPTLDLGRQIH 358 (624)
Q Consensus 284 ~~~~A~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~ 358 (624)
+..+|...|..++.. ++ .+...+..+|...+++++|.++|+..++.. . .-+...|.+.+-..-+ +.+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 456666666664432 22 233445566777777777777777665541 1 1123344444433211 2222233
Q ss_pred HHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC---CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006955 359 AQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH---DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD 435 (624)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 435 (624)
.+-.-.--+..+.++-++.++|.-+++.+.|++.|++...- ...+|+.+..-+.....+++|...|+.... +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22222223445666666666666666777777776666522 334555555556666666666666666543 3333
Q ss_pred h-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHH
Q 006955 436 D-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGAL 513 (624)
Q Consensus 436 ~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (624)
. ..|..+...|.+.++++.|.-.|+++.+ +.| +......+...+.+.|+.++|+.+++++.... +-|+..--.-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 2 3455555566666777777766666665 455 55555566666666667777777776665421 2234444444
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
+..+...+++++|...++++.++.|.+..+|..++..|.+.|+.+.|+.=|.-+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 44555666667777777777667776666677777777777766666665555443
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.7e-12 Score=126.19 Aligned_cols=275 Identities=16% Similarity=0.175 Sum_probs=179.7
Q ss_pred ChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCC------CceehhhhhhHhhcCCCchHHHHHH
Q 006955 253 LVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTR------DVTVWNVMIFGLGENDLGEEGLKFF 323 (624)
Q Consensus 253 ~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 323 (624)
+..+|...|.++. .....+...+..+|...+++++|.++|+.+.+. +...|.+.+..+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 4566777776643 333355666777777778888888887777542 556677666554322 223333
Q ss_pred HHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchh
Q 006955 324 VQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIIS 403 (624)
Q Consensus 324 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 403 (624)
.+-.-.--+-.+.+|-++.++++-.++.+.|...|+.+++.. +.....|+-+..-+.....+|.|...|+.....|+..
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 221111123445677777777777777888887777776643 2255666666666677777777777777777555554
Q ss_pred HHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHH
Q 006955 404 WNS---IICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCV 478 (624)
Q Consensus 404 ~~~---l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 478 (624)
||+ +...|.+.++++.|+-.|++..+ +.|.. +....+...+.+.|+.++|+++++++.. +.| |+-.--..
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYHR 563 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHHH
Confidence 444 55667777778888877777776 55544 4455555667777777888887777765 445 55555556
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+..+...+++++|+..++++.+ +.|+ ..++-.+...|.+.|+.+.|+.-|.-+.+++|.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 6667777778888888877776 4554 446666667777778888888777777777774
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=4.1e-11 Score=119.57 Aligned_cols=79 Identities=10% Similarity=0.046 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHcccCCCCc-CH--HHHHHHHHHHHhcCChHHHHHHHH--HHHccCCCCCchHHHHHHHHHhcCChHHH
Q 006955 486 GLIDEAMNLLNEIRADGIEV-SP--TVWGALLGACRIHNNIKVGEIAGE--RVMELEPNNSGVYLILTEMYLSCGRREDA 560 (624)
Q Consensus 486 g~~~~A~~~~~~~~~~g~~p-~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 560 (624)
++.+.+.+.+++..+. .| |+ ....++...|.+.|++++|.+.|+ ...+..| ++..+.+++..+.+.|+.++|
T Consensus 313 ~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred CChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 4445555555554442 23 23 344455555666666666666666 3444555 444455666666666666666
Q ss_pred HHHHHHH
Q 006955 561 KRIFAQM 567 (624)
Q Consensus 561 ~~~~~~m 567 (624)
.+++++.
T Consensus 390 ~~~~~~~ 396 (409)
T TIGR00540 390 AAMRQDS 396 (409)
T ss_pred HHHHHHH
Confidence 6666554
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=4.2e-11 Score=119.50 Aligned_cols=282 Identities=10% Similarity=-0.045 Sum_probs=207.9
Q ss_pred HHhcCChHHHHHHHhhcC--CCCcch-hhHHHHHHHhcCChHHHHHHHhhcCC--CCce--ehhhhhhHhhcCCCchHHH
Q 006955 248 LIRNGLVKEAHSYLEKYP--YSNIAS-WTNVIVGYFEMGEVGSAIKVFELMTT--RDVT--VWNVMIFGLGENDLGEEGL 320 (624)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~l~~~~~~~~~~~~a~ 320 (624)
....|+++.|.+.+.+.. .|++.. +-....++...|+.+.|...+.+..+ |+.. ..-.....+...|+++.|.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 346899999999998877 333322 33445677888999999999998744 3332 3333577788899999999
Q ss_pred HHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHh---Hh----hCCHHHHHHHh
Q 006955 321 KFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMY---AR----CGNIQSALLEF 393 (624)
Q Consensus 321 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~ 393 (624)
..++.+.+.. +-+...+..+...+...|+++.+...+..+.+.+..++......-..++ .. ....+...+.+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998874 3345677788889999999999999999999987654333221111222 22 22234445556
Q ss_pred ccCCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH---HHHHHHhcccChHHHHHHHHHHhhhhcC
Q 006955 394 SSVPI---HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITF---VGVLSACSYAGLVDQGRYYFDCMKNKYF 467 (624)
Q Consensus 394 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 467 (624)
+..+. .++..+..+...+...|+.++|.+++++..+. .|+.... ..........++.+.+.+.++...+.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-- 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-- 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence 55552 47888999999999999999999999999984 5555421 11222234457888999999888874
Q ss_pred CCC-Cc--chHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 468 LQP-RS--AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 468 ~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
.| |+ ....++.+.+.+.|++++|.+.|+........|++..+..+...+...|+.++|.+++++.+.
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35 45 667789999999999999999999533333689998899999999999999999999999866
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1e-09 Score=102.95 Aligned_cols=220 Identities=13% Similarity=0.067 Sum_probs=173.6
Q ss_pred hhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHH
Q 006955 310 LGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA 389 (624)
Q Consensus 310 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (624)
+.-.|+.-.+..-|+..++....++. .|.-+..+|....+.++....|....+.+ +.++.+|..-..++.-.++++.|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 45568888999999988876433333 27677778899999999999999988875 45677788888888899999999
Q ss_pred HHHhccCCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhc
Q 006955 390 LLEFSSVPI---HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKY 466 (624)
Q Consensus 390 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 466 (624)
..-|++... .++..|-.+..+..+.+++++++..|++..++ ++.-+..|+.....+...++++.|.+.++..++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 999998873 35556666666777889999999999999985 455567999999999999999999999999887
Q ss_pred CCCCCc-------chH--HHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 006955 467 FLQPRS-------AHY--TCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMEL 536 (624)
Q Consensus 467 ~~~p~~-------~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 536 (624)
+.|.. ..+ ..++-.= =.+++..|.+++++..+ +.| ....+.+|...-...|+.++|+++|++...+
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred -hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44541 111 1111111 23899999999999997 556 4668999999999999999999999999886
Q ss_pred CC
Q 006955 537 EP 538 (624)
Q Consensus 537 ~p 538 (624)
..
T Consensus 567 Ar 568 (606)
T KOG0547|consen 567 AR 568 (606)
T ss_pred HH
Confidence 65
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=1.7e-10 Score=102.53 Aligned_cols=254 Identities=12% Similarity=0.042 Sum_probs=187.0
Q ss_pred cCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC-CCCC--cchhHHHHHHhHhhCCHHH
Q 006955 312 ENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIA-RNQF--TTVSNAMITMYARCGNIQS 388 (624)
Q Consensus 312 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~ 388 (624)
-++++++|.++|-+|.+.. +.+..+-.++.+.+.+.|.+|.|+++++.+.++- .+.+ ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567788888888877641 2222334456667777888888888888776631 1111 1122346677888899999
Q ss_pred HHHHhccCCC-C--CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHhcccChHHHHHHHHHH
Q 006955 389 ALLEFSSVPI-H--DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD----ITFVGVLSACSYAGLVDQGRYYFDC 461 (624)
Q Consensus 389 A~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~ 461 (624)
|+.+|..+.+ + -......++..|-...+|++|+++-+++.+.|-.+.. ..|.-+...+....+++.|..++++
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999988875 3 2346777889999999999999999999886655544 2556666777778899999999999
Q ss_pred hhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 462 MKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 462 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
..+. .| ++..--.+.+.+...|+++.|++.++...+.+..--+.+...|..+|...|+.++....+.++.+..+ .
T Consensus 206 Alqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-g 281 (389)
T COG2956 206 ALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-G 281 (389)
T ss_pred HHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-C
Confidence 8874 35 55555678888999999999999999998753222356888899999999999999999999999888 6
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 541 SGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+..-..+...-....-.+.|..++-+-..+
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 677777777666666667777766665554
No 52
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=8.5e-10 Score=99.16 Aligned_cols=444 Identities=11% Similarity=0.005 Sum_probs=243.2
Q ss_pred HHHHHcCCChhhHHHHHhcCCC----CCchhHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCChH
Q 006955 59 IAGLMQSDNVQGAKEVFDGMEV----RDVVTWNSMISGYVCNGLIDEALRVFHGMPL---KDVVSWNLVIGALVNCQRMD 131 (624)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 131 (624)
+.-+....++..|+.+++.-.. ....+-..+..++.+.|++++|...+....+ ++...+..|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 4556667788888888876551 1224556777888899999999999987764 55556666666666788899
Q ss_pred HHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcc--c
Q 006955 132 LAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLT--S 209 (624)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~ 209 (624)
+|.++.....+ ++-....|.+...+.++-++-..+.+++... ..-.-+|.+.....-++.+|++++.+....+.. .
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 99888776543 3333344556666778777766666555433 233445566666666889999999998875443 3
Q ss_pred HHH-HHHHHHcCCCHHHHHHHhhhCCC--CCcch-HHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhc---
Q 006955 210 WKQ-LINGLVNSRRIDAAISYFKQMPE--TCEKT-WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEM--- 282 (624)
Q Consensus 210 ~~~-l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--- 282 (624)
.|. +.-+|.+..-++-+.++++--.+ ||+.. .+..+....+.=+-..|+.-.+.+. .|...-...+.-.++.
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~la-dN~~~~~~f~~~l~rHNLV 265 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELA-DNIDQEYPFIEYLCRHNLV 265 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHH-hcccccchhHHHHHHcCeE
Confidence 333 33456677777777776665544 44332 2222222222111111111111111 0111111222233332
Q ss_pred --CChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHH-----cCCCCcHHHH
Q 006955 283 --GEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTIC-----SDLPTLDLGR 355 (624)
Q Consensus 283 --g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~ 355 (624)
.+-+.|++++-.+.+.=+...-.|+-.|.++++..+|..+.+++.- ..|-......+..+. .....+..|.
T Consensus 266 vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred EEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 2335566665444433334445566668889999999988877642 234333333333222 1122344555
Q ss_pred HHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006955 356 QIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD 435 (624)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 435 (624)
+.|+.+-.++...|.. .--.++.+.+.-..++++.+..+.....- +..|
T Consensus 344 qffqlVG~Sa~ecDTI------------------------------pGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~Nd 392 (557)
T KOG3785|consen 344 QFFQLVGESALECDTI------------------------------PGRQSMASYFFLSFQFDDVLTYLNSIESY-FTND 392 (557)
T ss_pred HHHHHhcccccccccc------------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCc
Confidence 5555554444333221 11222333333344455555555555443 2222
Q ss_pred hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchH-HHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHH-
Q 006955 436 DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHY-TCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGAL- 513 (624)
Q Consensus 436 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l- 513 (624)
...-..+..+.+..|+..+|.++|-.+... .++ |..+| ..|.++|.+.+.++.|+.++-++-. +.+..++..+
T Consensus 393 D~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlI 467 (557)
T KOG3785|consen 393 DDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLI 467 (557)
T ss_pred chhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHH
Confidence 222223555666667777777766555431 121 33333 3566777777777777777766652 2233333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCchH
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
...|.+.+.+=-|-+.|..+..++| +|..|
T Consensus 468 An~CYk~~eFyyaaKAFd~lE~lDP-~pEnW 497 (557)
T KOG3785|consen 468 ANDCYKANEFYYAAKAFDELEILDP-TPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHhhhHHHccCC-Ccccc
Confidence 3557777777777777777777777 44433
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.8e-10 Score=105.58 Aligned_cols=279 Identities=13% Similarity=0.088 Sum_probs=175.2
Q ss_pred cCChHHHHHHHhhcCCC---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHH
Q 006955 282 MGEVGSAIKVFELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIH 358 (624)
Q Consensus 282 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 358 (624)
.|++..|++...+-.+. .+..|..-..+..+.|+.+.+-.++.+..+.--.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57777777777665443 222344444556667777777777777665422344445555555666777777777777
Q ss_pred HHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCC-----------chhHHHHHHHHHHcCChHHHHHHHHHH
Q 006955 359 AQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHD-----------IISWNSIICGLAYHGYAEKALELFERM 427 (624)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m 427 (624)
..+.+.+ +.++.+......+|.+.|+++....++.++.+.. ..+|+.+++-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7776655 3345555666777777777777777777665321 135565665555555555555555555
Q ss_pred HHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH
Q 006955 428 RLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP 507 (624)
Q Consensus 428 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (624)
..+ .+-++..-..++.-+.+.|+.++|.++.++..++ +..|+ ... .-...+-++.+.=++..++..+. .+.++
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 443 4455555566666677777777777777776654 23333 111 11234556666666665554442 23345
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
..+.+|...|.+++.+.+|...++.++...| +...|..++.++.+.|+.++|.++.++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6777777788888888888888887777777 777788888888888888888877777653
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=3.7e-11 Score=111.06 Aligned_cols=199 Identities=14% Similarity=0.053 Sum_probs=162.5
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
...+..+...+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 3455667788888899999988888765 3345678888889999999999999999998853 33446677778888
Q ss_pred cccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (624)
...|++++|...++++............+..+...+...|++++|.+.+++..+.. +.++..+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988742222245567778889999999999999999988742 33567888888999999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 527 EIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888889999999999999999998877653
No 55
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.7e-09 Score=104.04 Aligned_cols=443 Identities=15% Similarity=0.137 Sum_probs=242.7
Q ss_pred HHHHHHhCCChhHHHHHhccCCC--CC-cccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHH--HhCCChHH
Q 006955 89 MISGYVCNGLIDEALRVFHGMPL--KD-VVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGL--VREGRIVE 163 (624)
Q Consensus 89 l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~ 163 (624)
=+..+..+|++++|.+...++.. || ...+..=+-+..+.+.++.|..+.+.-...+......+=.+| .+.+..++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 34556677788888887777764 33 344555566667777787777555443321111111122333 46777888
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHH-HHcCCCHHHHHHHhhhCCCCCcchHH
Q 006955 164 ARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLING-LVNSRRIDAAISYFKQMPETCEKTWN 242 (624)
Q Consensus 164 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~ 242 (624)
|.+.++...+.+..+...-...+.+.|++++|.++|+.+.+.+...+...+.+ +...+-.-.+. +.+........+|.
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sye 176 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYE 176 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHH
Confidence 88877755444555555566677777888888888888777666554444332 11111111111 22222222223444
Q ss_pred HHHH---HHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHH-hhcCCCCc----------eehhhhhh
Q 006955 243 SIIS---VLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVF-ELMTTRDV----------TVWNVMIF 308 (624)
Q Consensus 243 ~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~----------~~~~~l~~ 308 (624)
.+.+ .+...|++.+|+++++... ++- +.+...|. ..--.|..
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 4333 3344566666666554431 000 00011100 11223444
Q ss_pred HhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHH---HHcCCCC-cHH-HHHHHH-----------HHHHhCCCCCcch
Q 006955 309 GLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLT---ICSDLPT-LDL-GRQIHA-----------QAIKIARNQFTTV 372 (624)
Q Consensus 309 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~~~-~~~-a~~~~~-----------~~~~~~~~~~~~~ 372 (624)
.+...|+..+|.++|...++.. .+|........+ +.....+ ++. ....++ .+........+..
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~ 311 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYR 311 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5666778888888777777664 344322222221 1111111 110 111111 1111111111111
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCCCCC-chhHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhc
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVPIHD-IISWNSIICGLA--YHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACS 447 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~ 447 (624)
-+.++.+|. +..+.+.++....+... ...+.+++..+. +...+.++.+++....+. .|.. ......+....
T Consensus 312 N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 312 NNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHH
Confidence 233444443 44566666666665333 233444444332 223577888888887764 3433 45555666778
Q ss_pred ccChHHHHHHHHH--------HhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccC--CCCcCHH----HHHHH
Q 006955 448 YAGLVDQGRYYFD--------CMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD--GIEVSPT----VWGAL 513 (624)
Q Consensus 448 ~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~----~~~~l 513 (624)
..|+++.|.+++. .+.+ +.-.+.+...+...|.+.++.+.|..++.+.... .-.+... ++.-+
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 8999999999998 3332 2234666777888888888877777777765431 0112223 33333
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
...-.++|+.++|..+++++.+.+|++..+...+..+|... +.+.|..+-+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 33446789999999999999999999999999999999887 5777776654
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=1.9e-10 Score=102.21 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=119.4
Q ss_pred HHHHHHhcCChHHHHHHHhhcC-CCCcc------hhhHHHHHHHhcCChHHHHHHHhhcCCCC---ceehhhhhhHhhcC
Q 006955 244 IISVLIRNGLVKEAHSYLEKYP-YSNIA------SWTNVIVGYFEMGEVGSAIKVFELMTTRD---VTVWNVMIFGLGEN 313 (624)
Q Consensus 244 ll~~~~~~~~~~~a~~~~~~~~-~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~ 313 (624)
+.+.|-+.|..+.|++++..+. .||.. ....|..-|...|-+|.|+.+|..+.+.. ......|+..|-..
T Consensus 75 LGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t 154 (389)
T COG2956 75 LGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT 154 (389)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh
Confidence 4444445555555555554444 22221 12234556777777777777777776533 23455677778888
Q ss_pred CCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHh
Q 006955 314 DLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEF 393 (624)
Q Consensus 314 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (624)
.+|++|++.-+++.+.+-.+...-.. ..|..|...+....+++.|..++
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIA-------------------------------qfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIA-------------------------------QFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHH-------------------------------HHHHHHHHHHhhhhhHHHHHHHH
Confidence 88888888877777654333322110 00112223333334444444444
Q ss_pred ccCCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC
Q 006955 394 SSVPI---HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP 470 (624)
Q Consensus 394 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 470 (624)
.+... ..+..--.+.......|++++|.+.|+...+.+..--..+...|..+|.+.|+.++...++.++.+. .+
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~ 280 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NT 280 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cC
Confidence 44331 1222223344455566666666666666665432222345555555666666666666666655552 24
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC 517 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (624)
++..-..+.+......-.+.|...+.+-+. -+|+...+..|+...
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYH 325 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhh
Confidence 444444444443333333444443333222 255555555555543
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.3e-09 Score=104.19 Aligned_cols=281 Identities=10% Similarity=0.024 Sum_probs=201.2
Q ss_pred CcchhhHHHHHHHhcCChHHHHHHHhhcCCCC---ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHH
Q 006955 268 NIASWTNVIVGYFEMGEVGSAIKVFELMTTRD---VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTI 344 (624)
Q Consensus 268 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 344 (624)
++.+...-.+-+...+++.+..++++.+.+.| ...+..-|.++...|+..+-..+=.+|.+. .+-.+.+|-++..-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 44444555566667778888888888776644 344555566777788877777777777765 23445677777777
Q ss_pred HcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHH
Q 006955 345 CSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKAL 421 (624)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 421 (624)
|...|+.++|+++|.+.......- ...+-.....|.-.|.-+.|+..+.... +..-..+--+.--|.+.++..-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 777788888888888766543222 2344556777888888888877665443 111112333445678899999999
Q ss_pred HHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhc-CCCC----CcchHHHHHHHhhccCChHHHHHHH
Q 006955 422 ELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKY-FLQP----RSAHYTCVVDLLGRFGLIDEAMNLL 495 (624)
Q Consensus 422 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (624)
+.|.+... +-|+. ...+-+.-.....+.+.+|..+|+.....- .+.+ -..+++.|..+|.+.+.+++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999877 66655 566666656667889999999999877421 0111 2345788999999999999999999
Q ss_pred HHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 006955 496 NEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLS 553 (624)
Q Consensus 496 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 553 (624)
++.+... +.+..++.++.-.|...|+++.|...|.+++-+.|+|..+-..|..+...
T Consensus 479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9988742 45788999999999999999999999999999999776666666655443
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=1.4e-08 Score=98.62 Aligned_cols=202 Identities=13% Similarity=0.124 Sum_probs=128.4
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhc
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVPIHD---IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACS 447 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 447 (624)
++...++.--..|-++....+++++.+-. +..--.....+-.+.-++++.+++++-...--.|+. ..|+..+.-+.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 34445566666778888888888877322 222222222334556678899999887765334554 36666655443
Q ss_pred c---cChHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhc
Q 006955 448 Y---AGLVDQGRYYFDCMKNKYFLQPR--SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIH 520 (624)
Q Consensus 448 ~---~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~ 520 (624)
+ ...++.|+.+|++..+ +.+|. -..|-.....-.+.|-...|+++++++... +++. ...|+..|.-....
T Consensus 559 ~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~ 635 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEI 635 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHH
Confidence 2 3578999999999998 46562 223334444445678999999999997643 4543 34788777554333
Q ss_pred CChHHHHHHHHHHHccCCCCCc--hHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCC
Q 006955 521 NNIKVGEIAGERVMELEPNNSG--VYLILTEMYLSCGRREDAKRIFAQMKENGVKKEP 576 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 576 (624)
=-......+|+++++.-|++-. .....+..-.+.|..+.|..++.--.+-.-+...
T Consensus 636 yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~ 693 (835)
T KOG2047|consen 636 YGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVT 693 (835)
T ss_pred hCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCC
Confidence 3345667899999998884332 2444555667889999999999765554433333
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=1.5e-09 Score=99.64 Aligned_cols=280 Identities=11% Similarity=0.007 Sum_probs=186.9
Q ss_pred CCCHHHHHHHhhhCCCCCc---chHHHHHHHHHhcCChHHHHHHHhhcCCC--C--cchhhHHHHHHHhcCChHHHHHHH
Q 006955 220 SRRIDAAISYFKQMPETCE---KTWNSIISVLIRNGLVKEAHSYLEKYPYS--N--IASWTNVIVGYFEMGEVGSAIKVF 292 (624)
Q Consensus 220 ~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~~l~~~~~~~g~~~~A~~~~ 292 (624)
.|+|.+|++++.+..+... ..|..-..+.-..|+.+.+-.++.++.++ | ..+.-+........|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 6788888888777554221 23444445666777777777777776622 2 223444555566667777666665
Q ss_pred hhcCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCC
Q 006955 293 ELMTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQF 369 (624)
Q Consensus 293 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 369 (624)
+++.. .++........+|.+.|++.....++..|.+.|+-.++..-.. .
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l----------------------------e 228 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL----------------------------E 228 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------H
Confidence 55432 3556666667777777777777777777777664443321000 0
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
..+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+++..|+. ...-.+
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~ 304 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPR 304 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhh
Confidence 0112222222222223333334555554 445666777788888999999999999999988777772 223346
Q ss_pred cccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (624)
.+-++...-++..+...+.++- ++..+..|...|.+.+.|.+|.+.|+...+ ..|+..+|..+..++...|+...|
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHH
Confidence 6777877777777777765432 557888999999999999999999998776 689999999999999999999999
Q ss_pred HHHHHHHHc
Q 006955 527 EIAGERVME 535 (624)
Q Consensus 527 ~~~~~~~~~ 535 (624)
.+..++.+-
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 999998875
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4e-09 Score=94.91 Aligned_cols=458 Identities=12% Similarity=0.053 Sum_probs=278.1
Q ss_pred HHHHHhcCChHHHHHHHhhCCCC----CcchHHHHHHHHHcCCChhhHHHHHhcCC---CCCchhHHHHHHHHHhCCChh
Q 006955 28 IRGYFKNGFLDNAMCLFNQMPER----DMFTYNTVIAGLMQSDNVQGAKEVFDGME---VRDVVTWNSMISGYVCNGLID 100 (624)
Q Consensus 28 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 100 (624)
+.-+..+.++..|+.+++--... ...+-.-+..++...|++++|...+..+. .++...+-.|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 44556677888999888876621 12334445667778999999999998765 456667777777778889999
Q ss_pred HHHHHhccCCCCCcccH-HHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCC--hh
Q 006955 101 EALRVFHGMPLKDVVSW-NLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKD--VQ 177 (624)
Q Consensus 101 ~a~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~ 177 (624)
+|..+-.+. |+.... ..++....+.++-++-..+.+.+... ..--.+|.......-.+.+|++++..+...+ -.
T Consensus 109 eA~~~~~ka--~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 109 EAKSIAEKA--PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHHhhC--CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 999887766 443333 44445556788888777777666432 2444556666555667889999999888543 33
Q ss_pred HHHH-HHHHHHHcCChhHHHHHHHHccc--CC-cccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhc--
Q 006955 178 AWNL-MIAGYLDNGCVGVAEDLFQKMHD--RD-LTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRN-- 251 (624)
Q Consensus 178 ~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~-- 251 (624)
..|. +..+|.+..-++-+.+++.--.+ +| ..+.|..+....+.=+-..|..-...+.+.-...|. .+.-+++.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHNL 264 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHNL 264 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcCe
Confidence 4443 34566777777777777666554 22 223444444444332222233222222221111121 12222222
Q ss_pred ---CChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCC-------CchHHHH
Q 006955 252 ---GLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEND-------LGEEGLK 321 (624)
Q Consensus 252 ---~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~ 321 (624)
.+-+.|.+++-.+...-+...-.|+-.|.+.|++++|..+.+++..-++.-|-.-.-.+...| ...-|..
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 233666666655554445556667778889999999999988876544433322212222222 2334555
Q ss_pred HHHHhHHcCCCCCHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC-
Q 006955 322 FFVQMKESGPSPDNA-TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH- 399 (624)
Q Consensus 322 ~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 399 (624)
.|+-.-+++..-|.. .-.++...+.-..+++.+..++..+...-...|...+| +..+++..|++.+|+++|-.+..|
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChh
Confidence 554443343332221 12233333444456788888887777766666666666 888999999999999999888754
Q ss_pred --CchhHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchH
Q 006955 400 --DIISWNS-IICGLAYHGYAEKALELFERMRLTDFKPDDITFV-GVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHY 475 (624)
Q Consensus 400 --~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 475 (624)
|..+|.+ +..+|.+.++++.|+.++-++.. +.+..+.. .+..-|.+.+.+=-|-+.|+.+.. +.|++..|
T Consensus 424 ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~---lDP~pEnW 497 (557)
T KOG3785|consen 424 IKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI---LDPTPENW 497 (557)
T ss_pred hhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc---cCCCcccc
Confidence 4456655 45678889999998887766532 22333333 444578888888888888887776 56888877
Q ss_pred HHHHHHhhccCChHHHHHHHHHcccCCCCc
Q 006955 476 TCVVDLLGRFGLIDEAMNLLNEIRADGIEV 505 (624)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 505 (624)
. |.......+|..+....-.|
T Consensus 498 e---------GKRGACaG~f~~l~~~~~~~ 518 (557)
T KOG3785|consen 498 E---------GKRGACAGLFRQLANHKTDP 518 (557)
T ss_pred C---------CccchHHHHHHHHHcCCCCC
Confidence 4 44444555666555433333
No 61
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.32 E-value=2.7e-08 Score=98.06 Aligned_cols=344 Identities=14% Similarity=0.138 Sum_probs=154.4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhH-HHHHHHH-----
Q 006955 20 DTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTW-NSMISGY----- 93 (624)
Q Consensus 20 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~l~~~~----- 93 (624)
|......+..++.+..-+++|-.+|+++..++. .+.+|.+..-+..|+++-+...+..+++. ..-...+
T Consensus 647 de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 647 DEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred cHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh
Confidence 444455555666666666777777776665543 33444333334444444333222111111 1112222
Q ss_pred ---------------------HhCCChhHHHHHhccCCCCCcc--cHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHH
Q 006955 94 ---------------------VCNGLIDEALRVFHGMPLKDVV--SWNLVIGALVNCQRMDLAESYFKEMGARDVASWTI 150 (624)
Q Consensus 94 ---------------------~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (624)
....++.+|+.+++.+...++. -|..+...|...|+++.|.++|.+.. .++.
T Consensus 722 ~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~d 796 (1636)
T KOG3616|consen 722 LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKD 796 (1636)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----hhHH
Confidence 3334444444444444322211 24444455555555555555554332 3344
Q ss_pred HHHHHHhCCChHHHHHHhccCCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHH
Q 006955 151 MVNGLVREGRIVEARKLFDKMPAK--DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAIS 228 (624)
Q Consensus 151 l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 228 (624)
.|.+|.+.|+|++|.++-.+...| .+..|-+-..-.-++|++.+|+++|-.+..|+. .|+.|-+.|..+..++
T Consensus 797 ai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIR 871 (1636)
T ss_pred HHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHH
Confidence 445555555555555555444433 223344444444455555555555554444443 3455555555555555
Q ss_pred HhhhCCC-CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhh
Q 006955 229 YFKQMPE-TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMI 307 (624)
Q Consensus 229 ~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 307 (624)
+..+-.. .-..|...+..-+-..|++..|+.-|-+. .-|.+.+++|...+-|++|.++-+.--..+..- .++
T Consensus 872 lv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea-----~d~kaavnmyk~s~lw~dayriaktegg~n~~k--~v~ 944 (1636)
T KOG3616|consen 872 LVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA-----GDFKAAVNMYKASELWEDAYRIAKTEGGANAEK--HVA 944 (1636)
T ss_pred HHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh-----hhHHHHHHHhhhhhhHHHHHHHHhccccccHHH--HHH
Confidence 5544321 11224444455555556666665554322 234455555555555555555543222111111 111
Q ss_pred hHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHH
Q 006955 308 FGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387 (624)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (624)
....++=--+.|.+++++. | .+...+.-.+..+.++-|..+-+-..+... ..+.-.+...+...|+++
T Consensus 945 flwaksiggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~k~---~~vhlk~a~~ledegk~e 1012 (1636)
T KOG3616|consen 945 FLWAKSIGGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKDKM---GEVHLKLAMFLEDEGKFE 1012 (1636)
T ss_pred HHHHHhhCcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhccC---ccchhHHhhhhhhccchh
Confidence 1112221223444444331 1 011122223444555555555444333321 112233445566778888
Q ss_pred HHHHHhccCC
Q 006955 388 SALLEFSSVP 397 (624)
Q Consensus 388 ~A~~~~~~~~ 397 (624)
+|-+-+-+..
T Consensus 1013 daskhyveai 1022 (1636)
T KOG3616|consen 1013 DASKHYVEAI 1022 (1636)
T ss_pred hhhHhhHHHh
Confidence 8866655544
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=6.5e-09 Score=104.59 Aligned_cols=467 Identities=11% Similarity=0.065 Sum_probs=247.3
Q ss_pred CCCcchHHHHHHHHHcCCChhhHHHHHhcCC----CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHH
Q 006955 49 ERDMFTYNTVIAGLMQSDNVQGAKEVFDGME----VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGAL 124 (624)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 124 (624)
.|+..+|.+++.-||..|+.+.|- +|..|. +-+...++.++....+.++.+.+. .|.+.+|..|..+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 566666666666666666666666 666555 224455666666655555555443 45566666666666
Q ss_pred HcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCC-CC-ChhHHHHHHHHHHHcCChhHHHHHHHHc
Q 006955 125 VNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMP-AK-DVQAWNLMIAGYLDNGCVGVAEDLFQKM 202 (624)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 202 (624)
.+.||+.. .+..++ -...+...+...|.-..-..++..+. .| ....-...+....-.|-++.+++++..+
T Consensus 94 r~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 66666554 111111 11223333444444444444443322 11 1111222333334445555555555555
Q ss_pred ccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHh-cCChHHHHHHHhhcC-CCCcchhhHHHHHHH
Q 006955 203 HDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIR-NGLVKEAHSYLEKYP-YSNIASWTNVIVGYF 280 (624)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~ 280 (624)
...... + ++..+++-+.. ...+++-..+.+... .+++.++..++..-.
T Consensus 166 Pvsa~~----------------------------~--p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~al 215 (1088)
T KOG4318|consen 166 PVSAWN----------------------------A--PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRAL 215 (1088)
T ss_pred Cccccc----------------------------c--hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHH
Confidence 431110 0 11111221111 111222222222222 366666777777777
Q ss_pred hcCChHHHHHHHhhcCCCC----ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcH----
Q 006955 281 EMGEVGSAIKVFELMTTRD----VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLD---- 352 (624)
Q Consensus 281 ~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---- 352 (624)
..|+++.|..++..|.+.. ..-|-.|+-+ .+....+..+++-|.+.|+.|+..|+...+..+...|...
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE 292 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc
Confidence 7777777777777776542 2222233322 6666777777788888888888888776666555522211
Q ss_pred --------------------HHHHHHHH------------HHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC-
Q 006955 353 --------------------LGRQIHAQ------------AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH- 399 (624)
Q Consensus 353 --------------------~a~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 399 (624)
.+...++. ..=.|......++... .-...+|+-+..+++-..+..|
T Consensus 293 ~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt 371 (1088)
T KOG4318|consen 293 GSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPT 371 (1088)
T ss_pred ccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCc
Confidence 11111111 0001333333333322 2222356666666666655522
Q ss_pred ------CchhHHHHHHHHHHcC----------------------ChHHHHHHHHHHHHCCCCCChh--------------
Q 006955 400 ------DIISWNSIICGLAYHG----------------------YAEKALELFERMRLTDFKPDDI-------------- 437 (624)
Q Consensus 400 ------~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~m~~~g~~p~~~-------------- 437 (624)
++..|..++.-|.+.- +..+..+.+.. ..||..
T Consensus 372 ~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler 446 (1088)
T KOG4318|consen 372 LRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELER 446 (1088)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhc
Confidence 3334444443332211 11111111111 122221
Q ss_pred --------------hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccC--
Q 006955 438 --------------TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-- 501 (624)
Q Consensus 438 --------------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 501 (624)
.-+.++..|.+.-+..++...-+..... + -...|..||+.+......+.|..+..+....
T Consensus 447 ~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~--l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~ 522 (1088)
T KOG4318|consen 447 SHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL--L--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDE 522 (1088)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccch
Confidence 1123333444444444444433333322 1 1367889999999999999999999987632
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc---cCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCcc
Q 006955 502 GIEVSPTVWGALLGACRIHNNIKVGEIAGERVME---LEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKK 574 (624)
Q Consensus 502 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 574 (624)
.+..|...+..+.+...+.+....+..++++..+ ..|.-..++..+.+.....|+.+...++.+-+...|+..
T Consensus 523 s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 523 SIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 2334556677788888888888888888888876 334445668888888889999999999999888888776
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.1e-08 Score=92.38 Aligned_cols=269 Identities=9% Similarity=0.017 Sum_probs=186.9
Q ss_pred CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhh---hhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHH
Q 006955 266 YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVM---IFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVL 342 (624)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 342 (624)
+.|......+..++...|+.++|+..|+....-|+.+...| .-.+.+.|+.+....+...+.... .-+...|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 56666777777888888888888888877665444332222 223455677777766666665431 12222232223
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHH
Q 006955 343 TICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEK 419 (624)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 419 (624)
.......+++.|..+-.+.++... .+...+-.-...+...|+.++|.-.|.... +-+..+|.-++.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 333445666666666665555431 122222223456677888888888887665 3477899999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHH-HHhc-ccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhccCChHHHHHHHH
Q 006955 420 ALELFERMRLTDFKPDDITFVGVL-SACS-YAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 420 a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
|.-+-+...+. +..+..+...+. ..|. ....-++|.+++++..+ +.|+ ....+.+.+.+.+.|..++++.+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 98888776653 344555655552 3333 33446789999988776 5674 6677888899999999999999999
Q ss_pred HcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 006955 497 EIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 497 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 542 (624)
+... ..||....+.|.+.+...+.+++|...|..++.++|++..
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 9876 6899999999999999999999999999999999996643
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=9.4e-09 Score=102.16 Aligned_cols=397 Identities=14% Similarity=0.097 Sum_probs=248.7
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCCCC-----cchHHHHH
Q 006955 174 KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPETC-----EKTWNSII 245 (624)
Q Consensus 174 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~ll 245 (624)
.|...|..|.-+....|++..+.+.|++...- ....|+.+...|...|.-..|+.+++.-..+. +..+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 46777888888888888888888888887652 33467888888888888888888887765422 22333333
Q ss_pred HHHH-hcCChHHHHHHHhhcC--------CCCcchhhHHHHHHHhc-----------CChHHHHHHHhhcCCCCceehhh
Q 006955 246 SVLI-RNGLVKEAHSYLEKYP--------YSNIASWTNVIVGYFEM-----------GEVGSAIKVFELMTTRDVTVWNV 305 (624)
Q Consensus 246 ~~~~-~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~ 305 (624)
..|. +.+..+++..+-.++. ...+..+..+.-+|... ....++++.+++..+.+..-++.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 3443 3455566555544444 22233344444444332 12345666677665433322222
Q ss_pred ---hhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-hCCCCCcchhHHHHHHhH
Q 006955 306 ---MIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK-IARNQFTTVSNAMITMYA 381 (624)
Q Consensus 306 ---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 381 (624)
+.--|+..++.+.|+...++..+-+-.-+...+..+.-.+...+++..|..+.+.... .|.......- -+..-.
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~--~~~i~~ 558 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG--KIHIEL 558 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh--hhhhhh
Confidence 3333666778888888888888776566777777777777778888888888775544 2321110000 011111
Q ss_pred hhCCHHHHHH-------Hhc-------------------cCC------CCCchhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006955 382 RCGNIQSALL-------EFS-------------------SVP------IHDIISWNSIICGLAYHGYAEKALELFERMRL 429 (624)
Q Consensus 382 ~~g~~~~A~~-------~~~-------------------~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 429 (624)
..++.++++. +|+ .+. ...+.++..+..-....+....-... |..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~ 635 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPS 635 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCc
Confidence 1233333321 222 111 11122333322221111110000000 222
Q ss_pred CCCCCCh--------hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 430 TDFKPDD--------ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 430 ~g~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
.-+.|.. ..|......+...+..++|...+.++.. +.| ....|......+...|.+++|.+.|.....
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 2233332 2344555677888899999988888776 445 777888888889999999999999999887
Q ss_pred CCCCcC-HHHHHHHHHHHHhcCChHHHHH--HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCc
Q 006955 501 DGIEVS-PTVWGALLGACRIHNNIKVGEI--AGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPG 577 (624)
Q Consensus 501 ~g~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 577 (624)
+.|+ +....++...+...|+...|.. ++..+++++|.++..|..|+.++...|+.++|.+.|....... +.+|-
T Consensus 713 --ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe-~S~PV 789 (799)
T KOG4162|consen 713 --LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE-ESNPV 789 (799)
T ss_pred --cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc-cCCCc
Confidence 6675 6688899999999999998888 9999999999999999999999999999999999999876553 24454
Q ss_pred eeEE
Q 006955 578 CSWI 581 (624)
Q Consensus 578 ~~~~ 581 (624)
..|.
T Consensus 790 ~pFs 793 (799)
T KOG4162|consen 790 LPFS 793 (799)
T ss_pred cccc
Confidence 4444
No 65
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.25 E-value=3e-07 Score=90.84 Aligned_cols=434 Identities=14% Similarity=0.094 Sum_probs=216.2
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCcc-cHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHh
Q 006955 90 ISGYVCNGLIDEALRVFHGMPLKDVV-SWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLF 168 (624)
Q Consensus 90 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 168 (624)
+.+|....++++|+.+-+..-.|... .-.+.++++...|+-++|-++ ...+-.+ .+.|..|.+.|.+..|.+..
T Consensus 564 igmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~el----k~sdgd~-laaiqlyika~~p~~a~~~a 638 (1636)
T KOG3616|consen 564 IGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAEL----KESDGDG-LAAIQLYIKAGKPAKAARAA 638 (1636)
T ss_pred HHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhh----ccccCcc-HHHHHHHHHcCCchHHHHhh
Confidence 34444445555555554444333222 223334444445555444432 1222222 33455666666666655543
Q ss_pred c--cCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchH-HHHH
Q 006955 169 D--KMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTW-NSII 245 (624)
Q Consensus 169 ~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~ll 245 (624)
. +....|......+..++.+..-+++|=++|+++...+. .+.+|.+..-+-+|+++-+-.-...+++. ....
T Consensus 639 ~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfafp~evv~lee~wg 713 (1636)
T KOG3616|consen 639 LNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFAFPEEVVKLEEAWG 713 (1636)
T ss_pred cCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHh
Confidence 2 11123444444444444444445555555555443221 22222222223333333322211111111 1112
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCce--ehhhhhhHhhcCCCchHHHHHH
Q 006955 246 SVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVT--VWNVMIFGLGENDLGEEGLKFF 323 (624)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~ 323 (624)
..+...|+++.|..-|-+.. -....+.+......|.+|+.+++.+..+++. -|..+...|...|+++.|.++|
T Consensus 714 ~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHH
Confidence 23333444444444332211 1112233445556677777777766655433 3555666677777777777766
Q ss_pred HHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchh
Q 006955 324 VQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIIS 403 (624)
Q Consensus 324 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 403 (624)
-+.- .++-.+..|.+.|+++.|.++-.+ -.|.+..+..|-+-..-+-+.|++.+|.+++-.+..|+.
T Consensus 789 ~e~~---------~~~dai~my~k~~kw~da~kla~e--~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-- 855 (1636)
T KOG3616|consen 789 TEAD---------LFKDAIDMYGKAGKWEDAFKLAEE--CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-- 855 (1636)
T ss_pred Hhcc---------hhHHHHHHHhccccHHHHHHHHHH--hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH--
Confidence 5421 234455566677777666555432 234444444555555556667777777777777766654
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDL 481 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 481 (624)
.|..|-++|..+..+++.++- .|+. .|...+..-+...|++..|...|-+... |.+-+++
T Consensus 856 ---aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnm 917 (1636)
T KOG3616|consen 856 ---AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNM 917 (1636)
T ss_pred ---HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHH
Confidence 356777777777777776653 2332 4556666677777888887776654332 4455666
Q ss_pred hhccCChHHHHHHHHHcccCCCCc-CHHHHH-------------------HHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEV-SPTVWG-------------------ALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~-------------------~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
|-..+.|++|-++.+.--..+... -...|. .-+.-.+..+.++-|..+.+-..+- ..+
T Consensus 918 yk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--k~~ 995 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMG 995 (1636)
T ss_pred hhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCc
Confidence 666777777766654321111000 011111 0111122344444444444433332 245
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.....++..+...|++++|-+-+-+..+.+
T Consensus 996 ~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred cchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 667777778888899999877666655543
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.3e-08 Score=96.37 Aligned_cols=424 Identities=13% Similarity=0.101 Sum_probs=218.8
Q ss_pred HHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhhHHHHHhcCCCC--CchhHHHHHHHHHhCCChhHH
Q 006955 28 IRGYFKNGFLDNAMCLFNQMP---ERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVR--DVVTWNSMISGYVCNGLIDEA 102 (624)
Q Consensus 28 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 102 (624)
+..+..+|++++|.+...++. +.+..++..=+.++.+.+++++|+.+.+.-..- +.+-+.--.-+.-+.+..++|
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 445667788888888877776 345566666667777888888888766654421 111111222333467888888
Q ss_pred HHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHH-HHhCCChHHHHHHhccCCCCChhHHH-
Q 006955 103 LRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNG-LVREGRIVEARKLFDKMPAKDVQAWN- 180 (624)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~- 180 (624)
+..++-..+.+..+...-...+-+.+++++|..+|+.+.+.+...+...+.+ +...+-.-.+. +.+........+|.
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYEL 177 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHHH
Confidence 8888855455555666667778888888888888888877544444333322 11111111221 33333332222333
Q ss_pred --HHHHHHHHcCChhHHHHHHHHccc--------CCcc----------cHHHHHHHHHcCCCHHHHHHHhhhCCC---CC
Q 006955 181 --LMIAGYLDNGCVGVAEDLFQKMHD--------RDLT----------SWKQLINGLVNSRRIDAAISYFKQMPE---TC 237 (624)
Q Consensus 181 --~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~ 237 (624)
.....+...|++.+|+++++...+ .|.. .--.|..++...|+.++|.+++....+ +|
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 334456678888888888888722 1111 133455566778888888888877765 33
Q ss_pred cchHHHHHHHH---HhcCCh-H-HHHHHHhhcC---------------CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC
Q 006955 238 EKTWNSIISVL---IRNGLV-K-EAHSYLEKYP---------------YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT 297 (624)
Q Consensus 238 ~~~~~~ll~~~---~~~~~~-~-~a~~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 297 (624)
........+-+ ....++ + .+...++... ...+..-+.++..| .+..+.+.++-...+.
T Consensus 258 ~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~ 335 (652)
T KOG2376|consen 258 EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPG 335 (652)
T ss_pred chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc
Confidence 32222211111 111111 1 0111111111 11111112222222 3444555555555444
Q ss_pred CC-ceehhhhhhHh--hcCCCchHHHHHHHHhHHcCCCCCH--HHHHHHHHHHcCCCCcHHHHHHHH--------HHHHh
Q 006955 298 RD-VTVWNVMIFGL--GENDLGEEGLKFFVQMKESGPSPDN--ATFTSVLTICSDLPTLDLGRQIHA--------QAIKI 364 (624)
Q Consensus 298 ~~-~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~ 364 (624)
.. ...+.+++..+ .+...+.++.+++...-+. .|.. ......+......|+++.|..++. .+.+.
T Consensus 336 ~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 336 MSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 32 12233333332 2222466666666665544 3333 333344455566777777777777 33333
Q ss_pred CCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC------CCCc----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006955 365 ARNQFTTVSNAMITMYARCGNIQSALLEFSSVP------IHDI----ISWNSIICGLAYHGYAEKALELFERMRLTDFKP 434 (624)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 434 (624)
+..| .+..++...|.+.++.+.|..++.+.. .+.. .++.-+...-.++|+.++|..+++++.+. .++
T Consensus 414 ~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~ 490 (652)
T KOG2376|consen 414 KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPN 490 (652)
T ss_pred ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCc
Confidence 3333 334455666666666555555554433 1111 12222333334556666666666666663 244
Q ss_pred ChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 435 DDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
|..+...++.+|++. +++.|..+-+
T Consensus 491 d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 445556666665554 4455544433
No 67
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=7.6e-08 Score=96.15 Aligned_cols=300 Identities=14% Similarity=0.151 Sum_probs=172.3
Q ss_pred CChhHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC------------CCcchHHHHHHHHHcCCChhhH
Q 006955 4 ARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPE------------RDMFTYNTVIAGLMQSDNVQGA 71 (624)
Q Consensus 4 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~A 71 (624)
|+++.|-+..+.+. +..+|..+.+.+.+..+++-|.-.+-.|.+ .+...=..+.......|-+++|
T Consensus 742 G~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA 819 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEA 819 (1416)
T ss_pred ccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHH
Confidence 56666666554443 345688888888887777777666666541 1112222233333456777777
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCCC-CcccHHHHHHHHHcCCChHHHHHHHHhcccC-------
Q 006955 72 KEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLK-DVVSWNLVIGALVNCQRMDLAESYFKEMGAR------- 143 (624)
Q Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 143 (624)
+.+|++... |..|=..|-..|.+++|.++-+.--+- -..||......+-..+|.+.|++.|++...+
T Consensus 820 ~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm 894 (1416)
T KOG3617|consen 820 LILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM 894 (1416)
T ss_pred HHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence 777776553 444555667778888887776654432 2235666666666677788888877765421
Q ss_pred ----------------ChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCc
Q 006955 144 ----------------DVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDL 207 (624)
Q Consensus 144 ----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 207 (624)
|+..|.-...-+-..|+.+.|+.++.. ..-|.++++..+-.|+.++|.++-++- .|.
T Consensus 895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~-----A~D~fs~VrI~C~qGk~~kAa~iA~es--gd~ 967 (1416)
T KOG3617|consen 895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS-----AKDYFSMVRIKCIQGKTDKAARIAEES--GDK 967 (1416)
T ss_pred HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH-----hhhhhhheeeEeeccCchHHHHHHHhc--ccH
Confidence 333333333344456777777777654 234556666666777777777776653 355
Q ss_pred ccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHH---------------HHHHHhhcCCCCcchh
Q 006955 208 TSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKE---------------AHSYLEKYPYSNIASW 272 (624)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---------------a~~~~~~~~~~~~~~~ 272 (624)
.....|.+.|-..|++.+|+..|-+.. +|...|+.|-.++.-++ |-.+|++.. .-.
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g----~~~ 1038 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG----GYA 1038 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc----hhh
Confidence 667788888888888888888887763 34444444433332222 222222211 112
Q ss_pred hHHHHHHHhcCChHHHHHHHhhcCC--------------CCceehhhhhhHhhcCCCchHHHHHHHHh
Q 006955 273 TNVIVGYFEMGEVGSAIKVFELMTT--------------RDVTVWNVMIFGLGENDLGEEGLKFFVQM 326 (624)
Q Consensus 273 ~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 326 (624)
...+..|-+.|.+.+|+++-=.-.+ .|+...+--...++...++++|..++-..
T Consensus 1039 ~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2334456666666666553211111 13333444444566667777777666443
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=1.3e-09 Score=92.62 Aligned_cols=164 Identities=16% Similarity=0.112 Sum_probs=136.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHH
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDL 481 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 481 (624)
...+.-.|...|+...|..-+++.++. .|+. .++..+...|.+.|+.+.|.+-|++... +.| +-.+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 445666788899999999999998884 5655 5888888888999999999999998886 557 67888889999
Q ss_pred hhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDA 560 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 560 (624)
+|..|++++|...|++....-.-| -+.+|..+..+..+.|+++.|+..+++.++.+|+++.....++......|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999887532222 2458888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCC
Q 006955 561 KRIFAQMKENGV 572 (624)
Q Consensus 561 ~~~~~~m~~~~~ 572 (624)
..++++....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999988877663
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=6.6e-10 Score=98.80 Aligned_cols=227 Identities=10% Similarity=-0.001 Sum_probs=173.2
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC--CC-CchhHHHHHHHHHHcCC
Q 006955 340 SVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP--IH-DIISWNSIICGLAYHGY 416 (624)
Q Consensus 340 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~ 416 (624)
.+..+|.+.|.+..|...++...+. .|-+.+|-.|-.+|.+..++..|+.+|.+.. -| ++....-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4445555566666666655555443 2334445556667777777777777776665 22 33333445666777888
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHH
Q 006955 417 AEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 417 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
.++|.++++...+.. ..|......+...|.-.++++.|..+++++.+- |+ .++..|+.+.-+|.-.++++-++..|+
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999988742 344556667777788889999999999999874 44 478888888888888999999999999
Q ss_pred HcccCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 497 EIRADGIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 497 ~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+....--.|+ ..+|-.|.......||+..|.+.|+.++..+|++...++.|+-.-.+.|+.++|..++...+...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8776544454 45898998888999999999999999999999999999999999999999999999999887654
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.20 E-value=2.7e-09 Score=98.58 Aligned_cols=192 Identities=15% Similarity=0.117 Sum_probs=130.2
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChH
Q 006955 342 LTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAE 418 (624)
Q Consensus 342 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 418 (624)
...+...|+++.|...+..+.+.. +.+...+..+...+...|++++|.+.+++.. +.+...+..+...+...|+++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 116 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYE 116 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHH
Confidence 333344444444444444433322 1223333445555555666666666555443 234456677777888888999
Q ss_pred HHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHH
Q 006955 419 KALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 419 ~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
+|...+++..+....| ....+..+..++...|++++|...+++..+. .| +...+..+...+...|++++|.+.++
T Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 193 (234)
T TIGR02521 117 QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLE 193 (234)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998887643223 2345666777888899999999999988874 34 56678888899999999999999999
Q ss_pred HcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 497 EIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 497 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
+..+. .+.++..+..+...+...|+.+.|..+.+.+....|
T Consensus 194 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 194 RYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 98775 244566777777888889999999998888766544
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=1.5e-09 Score=112.67 Aligned_cols=246 Identities=13% Similarity=0.056 Sum_probs=147.6
Q ss_pred CCchHHHHHHHHhHHcCCCCCHH-HHHHHHHHHc---------CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh
Q 006955 314 DLGEEGLKFFVQMKESGPSPDNA-TFTSVLTICS---------DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC 383 (624)
Q Consensus 314 ~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (624)
+.+++|...|++..+. .|+.. .+..+..++. ..++.+.|...++.+.+.. +.+...+..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3456888888887765 55543 3444433332 1233667777777777654 33445556666677777
Q ss_pred CCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHHHHH
Q 006955 384 GNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGRYYF 459 (624)
Q Consensus 384 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~ 459 (624)
|++++|...|++.. +.+...|..+..++...|++++|...+++..+ ..|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 77888877777765 33445667777777777888888888877776 345432 2223333455567777777777
Q ss_pred HHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 460 DCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT-VWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 460 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
+++.+. ..| ++..+..+..+|...|+.++|...+.++.. ..|+.. ..+.+...+...| +.|...++++.+..
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 776653 234 344466677777777888888877777654 244433 3344444555555 36666666665533
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 538 PNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 538 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
-..+.....+...|.-.|+.+.+..+ +++.+.|
T Consensus 504 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 QRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22222223355566666777766666 6665554
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=3.5e-09 Score=109.96 Aligned_cols=174 Identities=13% Similarity=0.015 Sum_probs=75.2
Q ss_pred HHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHH
Q 006955 386 IQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDC 461 (624)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 461 (624)
+++|...+++.. +.+...+..+...+...|++++|...+++..+ ..|+. ..+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444544444443 22333444444444445555555555555544 23332 2344444444455555555555555
Q ss_pred hhhhcCCCCC-cchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 462 MKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 462 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+.+ +.|+ +..+..++..+...|++++|+..++++.+.. .| ++..+..+..++...|+.++|...++++....|.
T Consensus 398 Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 398 CLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 444 2232 1122222223333445555555554443321 22 2223333444444455555555555554444444
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 540 NSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
+......++..|...| ++|...++++
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~l 499 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREF 499 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence 4444444444444444 2444444443
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.18 E-value=1.4e-09 Score=109.14 Aligned_cols=253 Identities=15% Similarity=0.161 Sum_probs=181.3
Q ss_pred HHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCC
Q 006955 321 KFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHD 400 (624)
Q Consensus 321 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 400 (624)
.++-.+...|+.|+.+||..++.-|+..|+.+.|. +|..|.-...+.+..+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999999 9999999999999999999999999998887665 678
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 006955 401 IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480 (624)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 480 (624)
..+|..+..+|..+|+... .+..++ -...+...+...|.-..-..++..+.-..+..||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999866 222222 122344455666666666666665443333444433 3445
Q ss_pred HhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh-cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHH
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI-HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRED 559 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 559 (624)
...-.|-|+.+++++..+.-..... +... +++-+.. ...+++-..+.+...+ .| ++.+|..+..+-...|+.+-
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhh
Confidence 5566778888888887776432111 1111 3444433 3455555555555555 55 88899999999999999999
Q ss_pred HHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHH
Q 006955 560 AKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNL 609 (624)
Q Consensus 560 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (624)
|..++.+|+++|++.++...|..+.| ..+.|-...+.+.+.+
T Consensus 223 Ak~ll~emke~gfpir~HyFwpLl~g--------~~~~q~~e~vlrgmqe 264 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFWPLLLG--------INAAQVFEFVLRGMQE 264 (1088)
T ss_pred HHHHHHHHHHcCCCcccccchhhhhc--------CccchHHHHHHHHHHH
Confidence 99999999999999999888886543 4444544444444433
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=7.5e-11 Score=77.74 Aligned_cols=50 Identities=30% Similarity=0.557 Sum_probs=46.8
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 399 HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999998874
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=2.3e-09 Score=105.76 Aligned_cols=234 Identities=15% Similarity=0.139 Sum_probs=164.2
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHh-----CC-CCC-cchhHHHHHHhHhhCCHHHHHHHhccCC--------CCC
Q 006955 336 ATFTSVLTICSDLPTLDLGRQIHAQAIKI-----AR-NQF-TTVSNAMITMYARCGNIQSALLEFSSVP--------IHD 400 (624)
Q Consensus 336 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~ 400 (624)
.++..+...|...|+++.|...++...+. |. .|. ....+.+...|...+++++|..+|+++. ..+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555666666666666666666655443 10 111 1122345667777888888877777664 112
Q ss_pred ---chhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCh--hhHHHHHHHhcccChHHHHHHHHHHhhhhcC--C
Q 006955 401 ---IISWNSIICGLAYHGYAEKALELFERMRL-----TDFKPDD--ITFVGVLSACSYAGLVDQGRYYFDCMKNKYF--L 468 (624)
Q Consensus 401 ---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 468 (624)
..+++.|..+|...|++++|...+++..+ .|..+.. ..++.+...|...+++++|..+++...+... +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 24677788889999999988888877643 1222222 2556677788899999999999988765432 1
Q ss_pred CCC----cchHHHHHHHhhccCChHHHHHHHHHcccC----CC--CcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc--
Q 006955 469 QPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GI--EVS-PTVWGALLGACRIHNNIKVGEIAGERVME-- 535 (624)
Q Consensus 469 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 535 (624)
.++ ..+++.|...|...|++++|.+++++++.. +. .+. ...++.+...|...+....|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467889999999999999999999987542 11 222 45778888999999999999999998876
Q ss_pred --cCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 536 --LEPNNS---GVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 536 --~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
..|..| .+|..|+.+|...|++++|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345444 4599999999999999999999888753
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=6.4e-11 Score=78.08 Aligned_cols=50 Identities=32% Similarity=0.474 Sum_probs=45.8
Q ss_pred CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcC
Q 006955 298 RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSD 347 (624)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 347 (624)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999999999999999999999999999998874
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.8e-07 Score=84.31 Aligned_cols=292 Identities=10% Similarity=-0.011 Sum_probs=201.9
Q ss_pred CCcchhhHHHHHHHh--cCChHHHHHHHhhcCC-----CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHH--
Q 006955 267 SNIASWTNVIVGYFE--MGEVGSAIKVFELMTT-----RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNAT-- 337 (624)
Q Consensus 267 ~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-- 337 (624)
++......-+.+++. .++...|...+-.+.. .|+.....+...+...|+.++|...|++.+.. .|+..+
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhH
Confidence 333333344444433 4555555554433322 36777888889999999999999999987654 454332
Q ss_pred --HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC---CCchhHHHHHHHHH
Q 006955 338 --FTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI---HDIISWNSIICGLA 412 (624)
Q Consensus 338 --~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 412 (624)
|..++ ...|+.+....+...+....- .+...+-.-........++..|+.+-++.+. +++..+-.-...+.
T Consensus 270 D~Ya~LL---~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 270 DLYAVLL---GQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLI 345 (564)
T ss_pred HHHHHHH---HhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHH
Confidence 33333 455666666655555443221 1111111223334456788888888887763 34444544456788
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHH-HHhh-ccCChH
Q 006955 413 YHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV-DLLG-RFGLID 489 (624)
Q Consensus 413 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~ 489 (624)
..+++++|.-.|+..+. +.|. ..+|..++.+|...|.+.+|.-.-....+. ++.+..+.+.+. ..+. .-..-+
T Consensus 346 ~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred hccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHH
Confidence 88999999999999876 5654 479999999999999999998888887764 333666665552 2232 233458
Q ss_pred HHHHHHHHcccCCCCcCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 490 EAMNLLNEIRADGIEVSP-TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
+|.+++++... +.|+. ...+.+...|...|..+.++.++++.+...| |......|+..+...+.+.+|.+.|...+
T Consensus 422 KAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 422 KAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 89999998776 67763 4666777888999999999999999999999 88999999999999999999999998877
Q ss_pred HCC
Q 006955 569 ENG 571 (624)
Q Consensus 569 ~~~ 571 (624)
..+
T Consensus 499 r~d 501 (564)
T KOG1174|consen 499 RQD 501 (564)
T ss_pred hcC
Confidence 654
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.4e-06 Score=89.35 Aligned_cols=223 Identities=14% Similarity=0.090 Sum_probs=144.6
Q ss_pred ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHH
Q 006955 300 VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITM 379 (624)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (624)
+..|..+..+-.+.|...+|++-|-+ .-|+..|..++..+.+.|.++.-..++..+++...+|.+. +.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 46788888888888998888887754 3467789999999999999999999999988887766554 578999
Q ss_pred hHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHH
Q 006955 380 YARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYF 459 (624)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 459 (624)
|++.+++.+.++++. .||......+.+-|...+.++.|.-+|... ..|..+...+...|+++.|...-
T Consensus 1176 yAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999888777653 445555555666666666666666555433 23445555555556666555443
Q ss_pred HHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 460 DCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 460 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+++ .+..+|..+..+|...+.+.-| +|-..++-....-+..|+..|...|-+++-+.+++..+.+...
T Consensus 1244 RKA-------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA 1311 (1666)
T KOG0985|consen 1244 RKA-------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA 1311 (1666)
T ss_pred hhc-------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH
Confidence 321 2455565555555555444333 2322223334445555666666666666666666666666655
Q ss_pred CCchHHHHHHHHHhc
Q 006955 540 NSGVYLILTEMYLSC 554 (624)
Q Consensus 540 ~~~~~~~l~~~~~~~ 554 (624)
....|..|+..|.+-
T Consensus 1312 HMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1312 HMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHHHHHhc
Confidence 555566666555543
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=3.5e-09 Score=100.43 Aligned_cols=187 Identities=18% Similarity=0.154 Sum_probs=99.7
Q ss_pred HHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccC
Q 006955 375 AMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAG 450 (624)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g 450 (624)
.+...|...|+.+.|...|++.. +.++..|+.+...+...|++++|...|++..+ +.|+. .++..+..++...|
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCC
Confidence 34444555555555555555443 23445666666667777777777777777665 34543 45555555666667
Q ss_pred hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 451 LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
++++|.+.+++..+. .|+..........+...++.++|...+.+.... ..|+...+ .+ .....|+...+ ..+
T Consensus 147 ~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg~~~~~-~~~ 218 (296)
T PRK11189 147 RYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLGKISEE-TLM 218 (296)
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHccCCCHH-HHH
Confidence 777777777766652 343222222222234456677777777554321 12222211 11 12223333332 122
Q ss_pred HHHH-------ccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 531 ERVM-------ELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 531 ~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+.+. ++.|..+.+|..++..+...|++++|...|++..+.+
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222 2344455667777777777777777777777666554
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=3.7e-07 Score=89.32 Aligned_cols=102 Identities=20% Similarity=0.205 Sum_probs=58.1
Q ss_pred CCCchhHHH--HHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcch
Q 006955 398 IHDIISWNS--IICGLAYHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAH 474 (624)
Q Consensus 398 ~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 474 (624)
+|....|.. ++..+-..|+++.|+..++....+ .|+.. -|..=.+.+...|++++|..++++..+- -.||...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~I 441 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAI 441 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHH
Confidence 334443433 455566777777777777776653 45442 3433445566677777777777766652 1133333
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCC
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGI 503 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (624)
-.--+.-..++++.++|.+++......|.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 32444445566777777777766665553
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.12 E-value=8.2e-08 Score=95.66 Aligned_cols=415 Identities=13% Similarity=0.046 Sum_probs=244.9
Q ss_pred CCcccHHHHHHHHHcCCChHHHHHHHHhcccC---ChhHHHHHHHHHHhCCChHHHHHHhccCCCC-----ChhHHHHHH
Q 006955 112 KDVVSWNLVIGALVNCQRMDLAESYFKEMGAR---DVASWTIMVNGLVREGRIVEARKLFDKMPAK-----DVQAWNLMI 183 (624)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~ 183 (624)
.++..|..+.-+..+.|++..+.+.|++...- ....|..+...|...|.-..|+.++++-..+ ++..+-..-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 56667777777788888888888888877652 4567777777888888888888887776533 233333333
Q ss_pred HHHHH-cCChhHHHHHHHHcccC--------CcccHHHHHHHHHc----CC-------CHHHHHHHhhhCCC---CCcch
Q 006955 184 AGYLD-NGCVGVAEDLFQKMHDR--------DLTSWKQLINGLVN----SR-------RIDAAISYFKQMPE---TCEKT 240 (624)
Q Consensus 184 ~~~~~-~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~----~~-------~~~~A~~~~~~~~~---~~~~~ 240 (624)
..|.+ -|..+++++.-.+..+. ....|..+.-+|.. .. .-.++++.+++..+ .|+..
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 44443 35666666666555541 12233333333321 11 12455666666644 23333
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehh---hhhhHhhcC
Q 006955 241 WNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWN---VMIFGLGEN 313 (624)
Q Consensus 241 ~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~ 313 (624)
...+.--++-.++++.|.+..++.. ..++..|..+.-.+...+++.+|+.+.+.....-...++ .-+..-..-
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 3334444556667777766666555 445666777777777777777777777665432111111 111222224
Q ss_pred CCchHHHHHHHHhHHc--CCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHH--hCCCCCcchhHHHHHHhH---hhCCH
Q 006955 314 DLGEEGLKFFVQMKES--GPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK--IARNQFTTVSNAMITMYA---RCGNI 386 (624)
Q Consensus 314 ~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~---~~g~~ 386 (624)
++.++++.....+..- ...|-..+. +-....+....+.- ......+.++..+..... +.-..
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~-----------~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTL-----------DEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhh-----------hhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 5566666555554331 001100010 00000011100000 001111222222221111 11111
Q ss_pred HHHHHHhccCCCCC------chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 387 QSALLEFSSVPIHD------IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 387 ~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
+..+..+.....|+ ...|......+...++.++|...+.+..+. ..-....|......+...|.+.+|.+.|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 11111112222232 134666677788899999999888888763 23333466666667788899999999999
Q ss_pred HhhhhcCCCC-CcchHHHHHHHhhccCChHHHHH--HHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 461 CMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMN--LLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 461 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
.... +.| ++.+..++..++.+.|+..-|.. ++..+.+.+ +.++..|-.|...+.+.|+.+.|...|.-+.++.
T Consensus 709 ~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 709 VALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 8776 678 68889999999999998888887 999998843 4468899999999999999999999999999988
Q ss_pred CCCCc
Q 006955 538 PNNSG 542 (624)
Q Consensus 538 p~~~~ 542 (624)
+.+|.
T Consensus 785 ~S~PV 789 (799)
T KOG4162|consen 785 ESNPV 789 (799)
T ss_pred cCCCc
Confidence 77664
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=2e-09 Score=95.83 Aligned_cols=231 Identities=13% Similarity=0.036 Sum_probs=157.1
Q ss_pred hhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCC
Q 006955 306 MIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN 385 (624)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (624)
+..+|.+.|.+.+|.+.|+.-.+. .|-..||..+-.+|.+..++..|..++.+..+. .|.++....-....+...++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 344444444444444444443333 333334444444444444444444444433332 12222223345556666777
Q ss_pred HHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHh
Q 006955 386 IQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCM 462 (624)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 462 (624)
.++|.++++.+. +.++.....+...|...++++-|+..++++.+.|+ -++..|+.+.-+|.-.+++|-+..-|++.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 788888777665 33555555666778888999999999999999884 46678888888999999999999999988
Q ss_pred hhhcCCCCC--cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 463 KNKYFLQPR--SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 463 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
.... -.|+ ..+|-.+.......|++..|.+.|+-.+... ......++.|.-.-.+.|++++|..++..+....|.-
T Consensus 385 lsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 385 LSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred Hhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 7642 3343 5677788888899999999999999887642 3346688888888889999999999999999999854
Q ss_pred Cc
Q 006955 541 SG 542 (624)
Q Consensus 541 ~~ 542 (624)
..
T Consensus 463 ~E 464 (478)
T KOG1129|consen 463 AE 464 (478)
T ss_pred cc
Confidence 33
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.06 E-value=2.3e-07 Score=94.92 Aligned_cols=168 Identities=13% Similarity=0.032 Sum_probs=111.7
Q ss_pred ChhHHHHHHhhCCCCCc---chHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHcCCChhhHHHHHhcC
Q 006955 5 RIQEAQNLFDKMPQRDT---VTWNVMIRGYFKNGFLDNAMCLFNQMPER---DMFTYNTVIAGLMQSDNVQGAKEVFDGM 78 (624)
Q Consensus 5 ~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 78 (624)
+...|...|=+..+.|+ ..|..|..-|+...+...|.+.|+++.+. +..+...+...|++..+++.|..+.-..
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 45556666655555444 37888888888878888899998888743 4566777788888888888888874333
Q ss_pred CCCC-----chhHHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHhcccCChh-HHH
Q 006955 79 EVRD-----VVTWNSMISGYVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGALVNCQRMDLAESYFKEMGARDVA-SWT 149 (624)
Q Consensus 79 ~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 149 (624)
.+.+ ...|-.+.-.|...++...|+.-|+...+ | |...|..+..+|.+.|....|.++|.++..-++. +|.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 2211 12222344556777788888888877776 2 4456777888888888888888888777653332 222
Q ss_pred H--HHHHHHhCCChHHHHHHhccCC
Q 006955 150 I--MVNGLVREGRIVEARKLFDKMP 172 (624)
Q Consensus 150 ~--l~~~~~~~g~~~~a~~~~~~~~ 172 (624)
. ..-..+..|.+.+|+..+..+.
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2 2233456777777777776665
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=8.5e-08 Score=81.76 Aligned_cols=192 Identities=13% Similarity=0.036 Sum_probs=151.6
Q ss_pred HHHHHhHhhCCHHHHHHHhccCCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccC
Q 006955 375 AMITMYARCGNIQSALLEFSSVPI---HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAG 450 (624)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g 450 (624)
.|.-.|...|+...|..-+++... .+..+|..+...|.+.|..+.|.+.|++..+ +.|+. ...|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCC
Confidence 366678888888888888888773 2445788888888889999999999998887 45654 57777888888888
Q ss_pred hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHH
Q 006955 451 LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIA 529 (624)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 529 (624)
++++|...|++........--..+|..+..+-.+.|+.+.|...|++.++ ..| .+.+...+.......|++-.|..+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 99999999998887643333577888888888889999999999988877 344 466777888888888999999999
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 530 GERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 530 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+++.....+.+...+...+++-...|+.+.+-++=.++.+.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888876667888888888888889888888776665443
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=6e-06 Score=83.06 Aligned_cols=234 Identities=12% Similarity=0.090 Sum_probs=146.7
Q ss_pred CCCCcchHHHHHH--HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCC------------CCC
Q 006955 17 PQRDTVTWNVMIR--GYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGME------------VRD 82 (624)
Q Consensus 17 ~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~ 82 (624)
.+-|+.+-..++. .|...|+.+.|.+..+.+. +..+|..+...|.+..+++-|.-.+-.|. +.+
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 3457777777774 4678899999988766554 44678889999988888888777776665 112
Q ss_pred chhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc-CChhHHHHHHHHHHhCCCh
Q 006955 83 VVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA-RDVASWTIMVNGLVREGRI 161 (624)
Q Consensus 83 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 161 (624)
...-..........|.+++|+.+|++..+ |..|=+.|-..|.+++|.++-+.-.. .=..||..-..-+-..+|+
T Consensus 800 ~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 800 EEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccH
Confidence 13333334445677889999999988765 44455667778999999887764332 2345677777777788889
Q ss_pred HHHHHHhccCCCCChhH-----------------------HHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHH
Q 006955 162 VEARKLFDKMPAKDVQA-----------------------WNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLV 218 (624)
Q Consensus 162 ~~a~~~~~~~~~~~~~~-----------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 218 (624)
+.|++.|++...+-..+ |.--....-..|+.+.|+.+|....+ |..++...+
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~VrI~C 949 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMVRIKC 949 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhheeeEe
Confidence 99999888765332222 22222222334455555555444322 334444445
Q ss_pred cCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhc
Q 006955 219 NSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKY 264 (624)
Q Consensus 219 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 264 (624)
-+|+.++|-++.++- .|......+.+.|-..|++.+|..+|.++
T Consensus 950 ~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555555555555442 34445555666677777777777776554
No 86
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.4e-05 Score=80.62 Aligned_cols=156 Identities=12% Similarity=0.108 Sum_probs=119.3
Q ss_pred CCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhh
Q 006955 384 GNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMK 463 (624)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 463 (624)
+.+++|.+.-++... +..|+.+..+-.+.|...+|.+-|-+. -|+..|..++..+.+.|.+++-.+++..+.
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445555555444443 457999999999999999998877542 356789999999999999999999998877
Q ss_pred hhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch
Q 006955 464 NKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV 543 (624)
Q Consensus 464 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 543 (624)
++. - .+..-+.|+-+|++.++..+-.+.+ ..|+......+..-|...|.++.|.-+|... +.
T Consensus 1161 kk~-~--E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN 1222 (1666)
T KOG0985|consen 1161 KKV-R--EPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SN 1222 (1666)
T ss_pred Hhh-c--CccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hh
Confidence 652 3 3445567899999999988765544 4788888899999999999999998888654 45
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 006955 544 YLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
|..|+..++..|.+..|...-.
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 6677888888888887776443
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=9.8e-08 Score=90.63 Aligned_cols=222 Identities=16% Similarity=0.032 Sum_probs=152.8
Q ss_pred hcCCCchHHHHHHHHhHHcC-CCCC--HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHH
Q 006955 311 GENDLGEEGLKFFVQMKESG-PSPD--NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387 (624)
Q Consensus 311 ~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (624)
...++.+.++.-+.++.... ..|+ ...|......+...|+.+.|...|....+.. +.+...++.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 33456677777777776542 2232 2446666667788888888888888887764 345677888899999999999
Q ss_pred HHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 388 SALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 388 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
+|...|++.. +.+..+|..+..++...|++++|.+.+++..+ ..|+..........+...++.++|...+++...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9999998876 33556788888889999999999999999988 466554222222234556789999999977554
Q ss_pred hcCCCCCcchHHHHHHHhhccCChHH--HHHHHHHcccCCC--Cc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 465 KYFLQPRSAHYTCVVDLLGRFGLIDE--AMNLLNEIRADGI--EV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 465 ~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~g~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
. ..|+... ..+...+ .|+... +.+.+.+..+... .| ....|..+...+...|++++|...|+++++.+|.
T Consensus 194 ~--~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 K--LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred h--CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 2 2333322 2333333 444433 3333333222211 22 2457888999999999999999999999999975
Q ss_pred C
Q 006955 540 N 540 (624)
Q Consensus 540 ~ 540 (624)
+
T Consensus 269 ~ 269 (296)
T PRK11189 269 N 269 (296)
T ss_pred h
Confidence 4
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=1.4e-08 Score=94.63 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=90.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHh----hccC
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLL----GRFG 486 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g 486 (624)
+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+ +..| .+...++.++ .-.+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCch
Confidence 34456666666665431 2344555556666667777777777766654 2233 2222233322 2223
Q ss_pred ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh-HHHHHHHH
Q 006955 487 LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRR-EDAKRIFA 565 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 565 (624)
.+.+|..+|+++.+. ..+++.+++.+..++...|++++|+..++++++.+|.++.++..++-+....|+. +.+.+++.
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 577788888886653 4567777777777777788888888888888887787888888887777777777 55666777
Q ss_pred HHHHC
Q 006955 566 QMKEN 570 (624)
Q Consensus 566 ~m~~~ 570 (624)
+++..
T Consensus 261 qL~~~ 265 (290)
T PF04733_consen 261 QLKQS 265 (290)
T ss_dssp HCHHH
T ss_pred HHHHh
Confidence 66553
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.97 E-value=7.8e-07 Score=87.14 Aligned_cols=420 Identities=12% Similarity=0.082 Sum_probs=226.0
Q ss_pred cCCChHHHHHHHHhcccCCh---hHHHHHHHHHHhCCChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCChhHHHHHH
Q 006955 126 NCQRMDLAESYFKEMGARDV---ASWTIMVNGLVREGRIVEARKLFDKMPAK---DVQAWNLMIAGYLDNGCVGVAEDLF 199 (624)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 199 (624)
..+++....+..+.+.+..+ .+.....-.+...|+-++|......-... +.++|..+.-.+-...++++|++.|
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 34556666666666554322 22222223345567777777666555533 4456777776666667777777777
Q ss_pred HHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcC-----CCC
Q 006955 200 QKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYP-----YSN 268 (624)
Q Consensus 200 ~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~ 268 (624)
+..... |...+.-+.-.-++.|+++.....-....+ | ....|..+..+..-.|+...|..+++... .++
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 776642 333455554445555666655555555544 2 22345556666666677777766666555 233
Q ss_pred cchhhHH------HHHHHhcCChHHHHHHHhhcCCC--C-ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHH
Q 006955 269 IASWTNV------IVGYFEMGEVGSAIKVFELMTTR--D-VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFT 339 (624)
Q Consensus 269 ~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 339 (624)
...+... .....+.|..+.|.+.+...... | ...-.+-...+.+.++.++|..+|..++.. .||...|.
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy 256 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYY 256 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHH
Confidence 3332221 12344556666666666555432 1 112233344566667777777777776665 56666555
Q ss_pred HHHHHHc-CC-CCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCCh
Q 006955 340 SVLTICS-DL-PTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYA 417 (624)
Q Consensus 340 ~ll~~~~-~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 417 (624)
..+..+. +. +.......++....+.- +... .|-.... ...--..-.
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e---------------------------~p~Rlpl----svl~~eel~ 304 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEKY-PRHE---------------------------CPRRLPL----SVLNGEELK 304 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccc---------------------------cchhccH----HHhCcchhH
Confidence 4443332 11 11111112222221110 0000 0000000 000001112
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHH----hhhhcC--------C-CCCcch--HHHHHHHh
Q 006955 418 EKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDC----MKNKYF--------L-QPRSAH--YTCVVDLL 482 (624)
Q Consensus 418 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~--------~-~p~~~~--~~~l~~~~ 482 (624)
+..-.++..+.+.|+++-...+.++-. .-...+-..++.-. +....- . +|.... +-.++..+
T Consensus 305 ~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 305 EIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred HHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence 333445555666665543333333322 11111111111111 111000 1 233333 34678888
Q ss_pred hccCChHHHHHHHHHcccCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHH
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEVSPT-VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAK 561 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 561 (624)
-+.|+++.|...++..++ ..|+.. .|..-.+.+...|+.+.|...++++.+++-.|..+=..-++-..+..+.++|.
T Consensus 382 D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence 999999999999999886 466633 55555677888999999999999999988656655557788888999999999
Q ss_pred HHHHHHHHCCCcc-----CCceeEEEEc
Q 006955 562 RIFAQMKENGVKK-----EPGCSWIQIN 584 (624)
Q Consensus 562 ~~~~~m~~~~~~~-----~~~~~~~~~~ 584 (624)
++...+.+.|..- +-.|.|..++
T Consensus 460 ~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 460 EVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 9999998877421 1336666543
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.96 E-value=8.4e-07 Score=80.03 Aligned_cols=191 Identities=14% Similarity=0.066 Sum_probs=116.0
Q ss_pred HcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccC---CCCCchhHHHHHHHHHHcCChHHHH
Q 006955 345 CSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSV---PIHDIISWNSIICGLAYHGYAEKAL 421 (624)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~ 421 (624)
+...|+...++.....+++. .+.+...+..-..+|...|++..|+.-+... ...+.....-+-..+...|+.+.++
T Consensus 165 ~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 33444555555544444443 2344445555556666666666665444332 3445555555556666777777777
Q ss_pred HHHHHHHHCCCCCChh-hH---HHH---------HHHhcccChHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHhh
Q 006955 422 ELFERMRLTDFKPDDI-TF---VGV---------LSACSYAGLVDQGRYYFDCMKNKYFLQPR-----SAHYTCVVDLLG 483 (624)
Q Consensus 422 ~~~~~m~~~g~~p~~~-~~---~~l---------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~ 483 (624)
...++..+ +.|+.. .| ..+ +......++|.++.+..+...+. .|. ...+..+..++.
T Consensus 244 ~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 244 KEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeeccc
Confidence 77777666 456542 11 111 11234456677777766666653 343 223445666677
Q ss_pred ccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch
Q 006955 484 RFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV 543 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 543 (624)
..|++.+|++...+.++ +.|| ..++.--..+|.....++.|+.-|+++.+.+|+|..+
T Consensus 319 ~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred ccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 77888888888888876 5665 6677777788888888888888888888888866443
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.96 E-value=4e-07 Score=91.41 Aligned_cols=284 Identities=14% Similarity=0.065 Sum_probs=169.3
Q ss_pred HHHHhcCChHHHHHHHhhcCCC--C-ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHc----C--
Q 006955 277 VGYFEMGEVGSAIKVFELMTTR--D-VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICS----D-- 347 (624)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~-- 347 (624)
..+...|++++|++.++..... | ..........+.+.|+.++|..+|..+.+. .|+...|...+..|. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 3445667777777777654432 3 233445556677777777777777777766 566665555544443 1
Q ss_pred CCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHH-HHHHhccCCCCC-chhHHHHHHHHHHcCChHHHHHHHH
Q 006955 348 LPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQS-ALLEFSSVPIHD-IISWNSIICGLAYHGYAEKALELFE 425 (624)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (624)
..+.+....+++.+...- |.......+.-.+.....+.. +...+....... |.+|+.+-..|....+..-...++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 123555566666655443 222222222222222222222 222333333222 3456666555654545555555555
Q ss_pred HHHHC----C----------CCCChh--hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCCh
Q 006955 426 RMRLT----D----------FKPDDI--TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLI 488 (624)
Q Consensus 426 ~m~~~----g----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 488 (624)
..... | -.|... ++..+...|...|+.++|.+++++.++. .| .+..|..-.+.|-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCH
Confidence 54332 1 122222 3345566677889999999999988873 46 477888888889999999
Q ss_pred HHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC--CCC-------CchHHHHHHHHHhcCChH
Q 006955 489 DEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELE--PNN-------SGVYLILTEMYLSCGRRE 558 (624)
Q Consensus 489 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~ 558 (624)
.+|.+.++..... .+ |-..-+-.+..+.+.|+.++|...+....+.+ |.. .......+.+|.+.|++.
T Consensus 245 ~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 245 KEAAEAMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999888873 44 44444555566788899999998888776644 211 122356677888999999
Q ss_pred HHHHHHHHHHH
Q 006955 559 DAKRIFAQMKE 569 (624)
Q Consensus 559 ~A~~~~~~m~~ 569 (624)
.|++.+....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88887766654
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.95 E-value=4.7e-07 Score=90.94 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVD 480 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 480 (624)
++.-+.+.|...|++++|++.+++.+++ .|+. ..|..-...+-+.|++++|.+.++.... +.+ |-..-+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aK 270 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHH
Confidence 3455677788899999999999999884 6664 5677777888999999999999998886 455 5555556777
Q ss_pred HhhccCChHHHHHHHHHcccCCCCcCHH------HH--HHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEVSPT------VW--GALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
.+.++|+.++|.+++......+..|... +| .....+|.+.|++..|.+.|..+.+
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7889999999999999887766544221 22 3344678899999999888887776
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=5e-08 Score=91.05 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=118.3
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cChH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY----AGLV 452 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~ 452 (624)
..++...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhH
Confidence 34566778888888888776 4566677788899999999999999999987 34443 44444443322 3468
Q ss_pred HHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 006955 453 DQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNI-KVGEIAGE 531 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~ 531 (624)
.+|..+|+++... ..+++.+.+.+..++...|++++|.+++.+..+.. +-++.++..++-++...|+. +.+.+++.
T Consensus 184 ~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 184 QDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 9999999999875 45788899999999999999999999999987643 34677888888887778877 77888999
Q ss_pred HHHccCCCCC
Q 006955 532 RVMELEPNNS 541 (624)
Q Consensus 532 ~~~~~~p~~~ 541 (624)
++....|..|
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 9999999654
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=5.5e-08 Score=93.86 Aligned_cols=220 Identities=12% Similarity=0.055 Sum_probs=160.9
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHH
Q 006955 347 DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
+.|++.+|.-.|+..++.. |.+...+..|.......++-..|+..+.+.. +.|....-.|.-.|...|.-..|+.+
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4445555555555544432 2334445555666666666666666666554 33556666777788888888899999
Q ss_pred HHHHHHCCC-----CC---ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHH
Q 006955 424 FERMRLTDF-----KP---DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLL 495 (624)
Q Consensus 424 ~~~m~~~g~-----~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (624)
++..+.... .+ +...-.. ..+.....+....++|-++....+..+|+.+...|.-.|--.|++++|+..|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 988765321 00 1100000 2333444566667777777766555678999999999999999999999999
Q ss_pred HHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 496 NEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 496 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+.++. ++| |...|+-|...+......++|+..|.+++++.|.-..+.+.|+..|...|.|++|.+.|-+.+...
T Consensus 454 ~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 454 EAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99988 566 677999999999999999999999999999999999999999999999999999999888776543
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3.8e-07 Score=87.47 Aligned_cols=96 Identities=14% Similarity=0.019 Sum_probs=61.9
Q ss_pred HHHHcCCChHHHHHHHHhccc---CChhHHHHHHHHHHhCCChHHHHHHhccCCC--C-ChhHHHHHHHHHHHcCChhHH
Q 006955 122 GALVNCQRMDLAESYFKEMGA---RDVASWTIMVNGLVREGRIVEARKLFDKMPA--K-DVQAWNLMIAGYLDNGCVGVA 195 (624)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A 195 (624)
.+.+..||++.|...|.+.+. +|...|+.-..+|+..|++++|.+--.+-.+ | .+..|+.+..++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 345566777777777776664 3455666666777777777776665444432 2 445677777777777788888
Q ss_pred HHHHHHcccCCcc---cHHHHHHHH
Q 006955 196 EDLFQKMHDRDLT---SWKQLINGL 217 (624)
Q Consensus 196 ~~~~~~~~~~~~~---~~~~l~~~~ 217 (624)
+..|.+-++.++. .++.+.+++
T Consensus 90 ~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcCCchHHHHHhHHHhh
Confidence 8888777764432 445555554
No 96
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.86 E-value=8.3e-08 Score=94.99 Aligned_cols=171 Identities=13% Similarity=0.092 Sum_probs=87.4
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHH-----cCC-CCCH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHhC---CCCCcc
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKE-----SGP-SPDN-ATFTSVLTICSDLPTLDLGRQIHAQAIKIA---RNQFTT 371 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 371 (624)
+++.|...|.+.|++++|...++...+ .|. .|.. ..++.+...|...+.++.|..+++...+.- +.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~- 363 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN- 363 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc-
Confidence 344455555555655555555544322 121 2222 234455566677777777777776544321 11110
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHC----CC--CCC-hhhHHHHHH
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLT----DF--KPD-DITFVGVLS 444 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~--~p~-~~~~~~ll~ 444 (624)
..-..+++.|...|...|++.+|++++++..+. +. .+. ...++.+..
T Consensus 364 --------------------------~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 364 --------------------------VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred --------------------------hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 001124555666666666666666666655432 11 111 234555555
Q ss_pred HhcccChHHHHHHHHHHhh---hhcC-CCC-CcchHHHHHHHhhccCChHHHHHHHHHcc
Q 006955 445 ACSYAGLVDQGRYYFDCMK---NKYF-LQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~---~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (624)
.|.+.+..++|.++|.+.. ...| -.| ...+|..|+.+|.+.|++++|.++.+...
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6666666665555555422 1111 112 24556677777777777777777766543
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.83 E-value=2.8e-06 Score=84.02 Aligned_cols=259 Identities=9% Similarity=-0.074 Sum_probs=153.3
Q ss_pred HhhcCCCchHHHHHHHHhHHcCCCCCH-HHHHH---HHHHHcCCCCcHHHHHHHHHHHHhCCCCC-cchhHHHHHHhHhh
Q 006955 309 GLGENDLGEEGLKFFVQMKESGPSPDN-ATFTS---VLTICSDLPTLDLGRQIHAQAIKIARNQF-TTVSNAMITMYARC 383 (624)
Q Consensus 309 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 383 (624)
.+...|++++|.+.+++..+. .|+. ..+.. ........+..+.+...+.. .....|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence 456678888888888887765 3433 23321 11111223444444444433 1111222 22333455677888
Q ss_pred CCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCh--hhHHHHHHHhcccChHHHHHH
Q 006955 384 GNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDF-KPDD--ITFVGVLSACSYAGLVDQGRY 457 (624)
Q Consensus 384 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~ 457 (624)
|++++|...+++.. +.+...+..+...+...|++++|..++++...... .|+. ..+..+...+...|+.++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999988888776 44566777888888999999999999998876421 1222 234456777888999999999
Q ss_pred HHHHhhhhcCCCCCcchH-H--HHHHHhhccCChHHHHHH--H-HHcccCC-CCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 458 YFDCMKNKYFLQPRSAHY-T--CVVDLLGRFGLIDEAMNL--L-NEIRADG-IEVSPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
++++........+..... + .+...+...|....+.++ + ....... .............++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999875422111111111 1 233333444433333332 1 1111100 0111222234556677889999999999
Q ss_pred HHHHccCCC---------CCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 531 ERVMELEPN---------NSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 531 ~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+.+....-. ........+.++...|++++|.+.+.+....+
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 887763211 23446677778889999999999999887654
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.3e-07 Score=85.57 Aligned_cols=177 Identities=14% Similarity=0.047 Sum_probs=109.5
Q ss_pred HHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHH
Q 006955 376 MITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQ 454 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 454 (624)
+..+|.+.++.+.++..|++...+... -....+....++++...+...- +.|... -...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 334566667777777776664411000 0112223334455544444433 344331 11122456677888888
Q ss_pred HHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 006955 455 GRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGER 532 (624)
Q Consensus 455 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 532 (624)
|+..+.+++.. .| |...|....-+|.+.|.+..|++-.+..++. .|+ ...|.--..++....+++.|...|.+
T Consensus 377 Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 377 AVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888874 35 7888888888888888888888888877763 444 33554445556667788888888888
Q ss_pred HHccCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 006955 533 VMELEPNNSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 533 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
.++.+|.+......+.+++......+...++.
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 88888877777777777766543333333333
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=3.5e-07 Score=80.62 Aligned_cols=148 Identities=8% Similarity=0.045 Sum_probs=118.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccC
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFG 486 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 486 (624)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. .| +...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCC
Confidence 3467888888886555433221 11 0222366778888888877763 45 8889999999999999
Q ss_pred ChHHHHHHHHHcccCCCCc-CHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHH
Q 006955 487 LIDEAMNLLNEIRADGIEV-SPTVWGALLGAC-RIHNN--IKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKR 562 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 562 (624)
++++|...+++... +.| ++..+..+..++ ...|+ .++|..+++++++.+|.++.++..++..+.+.|++++|..
T Consensus 88 ~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 88 DYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999988 455 677888888874 67777 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCC
Q 006955 563 IFAQMKENGV 572 (624)
Q Consensus 563 ~~~~m~~~~~ 572 (624)
.++++.+...
T Consensus 166 ~~~~aL~l~~ 175 (198)
T PRK10370 166 LWQKVLDLNS 175 (198)
T ss_pred HHHHHHhhCC
Confidence 9999988753
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.80 E-value=4.6e-06 Score=85.76 Aligned_cols=435 Identities=15% Similarity=0.090 Sum_probs=228.6
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHhcccC---ChhHHHHHHHHHHhCCChHHHHHHhccCCCCCh-----hHHHHHHHHHH
Q 006955 116 SWNLVIGALVNCQRMDLAESYFKEMGAR---DVASWTIMVNGLVREGRIVEARKLFDKMPAKDV-----QAWNLMIAGYL 187 (624)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~l~~~~~ 187 (624)
.|..|...|....|..+|.+.|+..-+- |........+.|++..+++.|..+.-...+.++ ..|....-.|.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 4555555555555666666666655542 334455556666666666666665322222211 12333444455
Q ss_pred HcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcc-hHHHHH--HHHHhcCChHHHHHHH
Q 006955 188 DNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPETCEK-TWNSII--SVLIRNGLVKEAHSYL 261 (624)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ll--~~~~~~~~~~~a~~~~ 261 (624)
+.++...|..-|+...+. |...|..+..+|...|++..|++.|.+...-++. +|.... -.-+..|.+.++...+
T Consensus 574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 566666666666666553 3335556666666666666666666555442222 222211 1223455555655555
Q ss_pred hhcC----------CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC-----------CCceehhhhhhHhhcCCCchHHH
Q 006955 262 EKYP----------YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT-----------RDVTVWNVMIFGLGENDLGEEGL 320 (624)
Q Consensus 262 ~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~ 320 (624)
..+. ..-..++..+...+...|-..+|..+|++..+ .+...|-.+- .|.
T Consensus 654 ~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac 723 (1238)
T KOG1127|consen 654 GLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DAC 723 (1238)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHH
Confidence 4444 00111111122222222222223333322111 1111222111 222
Q ss_pred HHHHHhHHcCCCCCHHHHHHHHHHHcCCCCc---H---HHHHHHHHHHHhCCCCCcchhHHHHHHhH---hhC----CHH
Q 006955 321 KFFVQMKESGPSPDNATFTSVLTICSDLPTL---D---LGRQIHAQAIKIARNQFTTVSNAMITMYA---RCG----NIQ 387 (624)
Q Consensus 321 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g----~~~ 387 (624)
.+|-+.. .. .|+.....++..-....+.. + .+.+.+-.-.+.-. .....||.-++.|. ..| +..
T Consensus 724 ~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 724 YIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 2333222 11 23322222222212222221 1 11111111111111 12223343333322 111 223
Q ss_pred HHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 388 SALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 388 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
.|+..+.+.. ..+...||.|.-. ...|++.-+...|-+-... .+.+..+|..+.-.+.+..+++.|...|.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 5666666544 4566778877655 6667888888877776653 233446888888888999999999999998876
Q ss_pred hcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHc----ccCCCCcCHHHHHHHHHHHHhcCChHHHH----------HH
Q 006955 465 KYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEI----RADGIEVSPTVWGALLGACRIHNNIKVGE----------IA 529 (624)
Q Consensus 465 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~g~~p~~~~~~~l~~~~~~~g~~~~a~----------~~ 529 (624)
+.| +...|-.........|+.-++..+|..- ...|-.|+...|.........+|+.+.-+ -.
T Consensus 879 ---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 879 ---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred ---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 567 6777766666667789888888888761 22344566666655555555666655443 44
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 530 GERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 530 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
.++.....|....+|...+....+.+.+++|.+...+..
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 555566789888999999999999999999998777653
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=5.2e-06 Score=75.06 Aligned_cols=302 Identities=10% Similarity=0.031 Sum_probs=186.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHH---HHHHcCCCHHHHHHHhhhCCC--CCcch-HHHHHHHHHhcCC
Q 006955 180 NLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLI---NGLVNSRRIDAAISYFKQMPE--TCEKT-WNSIISVLIRNGL 253 (624)
Q Consensus 180 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~ll~~~~~~~~ 253 (624)
.-+...+..+|++.+|+.-|...++.|+..|-++. ..|...|+...|+.=+....+ ||-.. ...-...+.+.|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 34566666677777777777777776666655554 356666666666655555543 43221 1112234555666
Q ss_pred hHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCC
Q 006955 254 VKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSP 333 (624)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 333 (624)
++.|..-|+.+...++.- +....++.+.-..++-. .....+..+...|+...|++....+++. .+.
T Consensus 122 le~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~W 187 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMITHLLEI-QPW 187 (504)
T ss_pred HHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHHHHHHhc-Ccc
Confidence 666665555554222110 00000111110011100 1122345566678888888888888775 255
Q ss_pred CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC--CCch----hHHHH
Q 006955 334 DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI--HDII----SWNSI 407 (624)
Q Consensus 334 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l 407 (624)
|...|..-..+|...|.+..|+.-++.+.+.....+...| .+-..+-..|+.+.++..+.+..+ ||-. .|-.+
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y-kis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY-KISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH-HHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 6666666777788888888888877777665544333333 466677778888888777776553 3221 12111
Q ss_pred ---------HHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-Cc
Q 006955 408 ---------ICGLAYHGYAEKALELFERMRLTDFKPDD-----ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RS 472 (624)
Q Consensus 408 ---------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~ 472 (624)
+......++|.++++..+...+. .|.. ..+..+-.++...|++.+|++.-.++.. +.| |+
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv 341 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHH
Confidence 12345678888888888888774 4442 2444556677888999999999999886 567 58
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccC
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRAD 501 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (624)
.++---..+|.-..+++.|+.-|+...+.
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88888889999999999999999999873
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.3e-05 Score=71.21 Aligned_cols=405 Identities=13% Similarity=0.122 Sum_probs=242.9
Q ss_pred HHHHHHHHHhCCChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcc--cHH-HHHHHHHcCC
Q 006955 148 WTIMVNGLVREGRIVEARKLFDKMPAK---DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLT--SWK-QLINGLVNSR 221 (624)
Q Consensus 148 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~-~l~~~~~~~~ 221 (624)
+++.+..+.+..++++|++++..-.++ +....+.|..+|....++..|...++++-..-+. -|. .-.+.+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 566777778889999999998776654 4456777888899999999999999998653222 222 2346677889
Q ss_pred CHHHHHHHhhhCCCC-CcchHHHHH--HHHHhcCChHHHHHHHhhcC-CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC
Q 006955 222 RIDAAISYFKQMPET-CEKTWNSII--SVLIRNGLVKEAHSYLEKYP-YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT 297 (624)
Q Consensus 222 ~~~~A~~~~~~~~~~-~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 297 (624)
.+.+|+.+...|.+. +...-..-+ ....+.+++..+..++++.. ..+..+.+...-...+.|+.+.|.+-|+...+
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 999999999999773 222222222 23446788888888888877 46666777777777788888888888887765
Q ss_pred C----CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHH-HHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcch
Q 006955 298 R----DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFT-SVLTICSDLPTLDLGRQIHAQAIKIARNQFTTV 372 (624)
Q Consensus 298 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 372 (624)
- ....||..+ ++.+.++++.|++...++.+.|++-.+..-. ....+ .....+.....+..... +..
T Consensus 173 vsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sal-------~eA 243 (459)
T KOG4340|consen 173 VSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSAL-------VEA 243 (459)
T ss_pred hcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHHH-------HHH
Confidence 3 334455443 4556788888888888888888653221100 00000 00000000000000000 112
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCCCC-----CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhc
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVPIH-----DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACS 447 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 447 (624)
+|.-...+.+.|+.+.|.+.+..|+++ |++|...+.-. -..+++-+..+-++-+.+.+ +-...||..++-.|+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 233344567889999999999999843 66666554322 22345555555566666542 234478999999999
Q ss_pred ccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH--HHhcCC---
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA--CRIHNN--- 522 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~--~~~~g~--- 522 (624)
+..-++.|-.++.+-....-.-.++..|+.|=......-..++|.+-+..+... .....-...+.. -...++
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~---l~~kLRklAi~vQe~r~~~dd~a 398 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM---LTEKLRKLAIQVQEARHNRDDEA 398 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHH
Confidence 999999988887653321000113444543333333445677777666554421 111111111211 111222
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 523 IKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 523 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
...+.+-+++.+++.- .+...-++.|....++..+.++|..-.+
T Consensus 399 ~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 399 IRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2334445555555431 2566777888899999999999875443
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=7.4e-07 Score=82.13 Aligned_cols=59 Identities=20% Similarity=0.117 Sum_probs=51.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCC---CchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 512 ALLGACRIHNNIKVGEIAGERVMELEPNN---SGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 512 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.+...+...|++..|...++++++..|++ +..+..++.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44566788999999999999999987754 468999999999999999999999888654
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=3.1e-07 Score=76.48 Aligned_cols=105 Identities=10% Similarity=-0.055 Sum_probs=53.4
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH 520 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 520 (624)
...++...|++++|...|+.+.. +.| +...+..+..++.+.|++++|+..|++..+.. +.++..+..+..++...
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 34444555555555555555544 223 44455555555555555555555555555421 22344555555555555
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 521 NNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
|++++|...++++++..|.++..+...+.+
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 555555555555555555555555444433
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=2.9e-07 Score=76.69 Aligned_cols=109 Identities=10% Similarity=-0.059 Sum_probs=93.5
Q ss_pred HHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 006955 457 YYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMEL 536 (624)
Q Consensus 457 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 536 (624)
.++++..+ +.|+ .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+++.++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34455444 3454 35567888899999999999999988742 346789999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 537 EPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 537 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+|.++..+..++.++...|++++|.+.+++..+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999987764
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=2.9e-05 Score=87.24 Aligned_cols=358 Identities=12% Similarity=0.002 Sum_probs=215.8
Q ss_pred HHHHHcCCCHHHHHHHhhhCCCCCcc--hHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHH
Q 006955 214 INGLVNSRRIDAAISYFKQMPETCEK--TWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGS 287 (624)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 287 (624)
...+...|++.+|............. ............|+...+...+..+. ..++.........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 33455566666666655555432211 11122234455677777777776653 2233334445556667888888
Q ss_pred HHHHHhhcCC----CC---c-----eehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCH----HHHHHHHHHHcCCCCc
Q 006955 288 AIKVFELMTT----RD---V-----TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDN----ATFTSVLTICSDLPTL 351 (624)
Q Consensus 288 A~~~~~~~~~----~~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~ 351 (624)
+...+..... .+ . .....+...+...|++++|...+++....-...+. .....+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 8887765532 11 1 11112233456788999999999887653111121 2334455566778999
Q ss_pred HHHHHHHHHHHHhCCCCC-----cchhHHHHHHhHhhCCHHHHHHHhccCC-------CCC----chhHHHHHHHHHHcC
Q 006955 352 DLGRQIHAQAIKIARNQF-----TTVSNAMITMYARCGNIQSALLEFSSVP-------IHD----IISWNSIICGLAYHG 415 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~----~~~~~~l~~~~~~~~ 415 (624)
+.|...+........... ......+...+...|+++.|...+++.. .++ ...+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999988887765322111 2233456667788899999988776643 111 123444555667789
Q ss_pred ChHHHHHHHHHHHHC--CCCCC--hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchH-----HHHHHHhhccC
Q 006955 416 YAEKALELFERMRLT--DFKPD--DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHY-----TCVVDLLGRFG 486 (624)
Q Consensus 416 ~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g 486 (624)
++++|...+++.... ...+. ...+..+.......|+.+.|...++.+............+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 999999998887652 11222 2234445556778899999999888875421111111111 11224445678
Q ss_pred ChHHHHHHHHHcccCCCCcCH---HHHHHHHHHHHhcCChHHHHHHHHHHHccCC------CCCchHHHHHHHHHhcCCh
Q 006955 487 LIDEAMNLLNEIRADGIEVSP---TVWGALLGACRIHNNIKVGEIAGERVMELEP------NNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~ 557 (624)
+.+.|.+++.+.......... ..+..+..++...|+.++|...++++..... ....+...++.++...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 999999998876642211111 1134556667888999999999998887421 1234577888889999999
Q ss_pred HHHHHHHHHHHHCC
Q 006955 558 EDAKRIFAQMKENG 571 (624)
Q Consensus 558 ~~A~~~~~~m~~~~ 571 (624)
++|...+.+..+..
T Consensus 748 ~~A~~~L~~Al~la 761 (903)
T PRK04841 748 SEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=3.8e-06 Score=74.43 Aligned_cols=273 Identities=14% Similarity=0.096 Sum_probs=180.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHcCCChhhHHHHHhcCC--CCCchhHHH-HHHHHHhCC
Q 006955 24 WNVMIRGYFKNGFLDNAMCLFNQMPER---DMFTYNTVIAGLMQSDNVQGAKEVFDGME--VRDVVTWNS-MISGYVCNG 97 (624)
Q Consensus 24 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-l~~~~~~~g 97 (624)
+++.+..+.+..++++|++++..-.+. +....+.|..+|....++..|-.+++.+- .|...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 555666667777888898888777643 44567777778888888889989888876 344333322 234455678
Q ss_pred ChhHHHHHhccCCC-CCcccHHHHHHHHH--cCCChHHHHHHHHhccc-CChhHHHHHHHHHHhCCChHHHHHHhccCCC
Q 006955 98 LIDEALRVFHGMPL-KDVVSWNLVIGALV--NCQRMDLAESYFKEMGA-RDVASWTIMVNGLVREGRIVEARKLFDKMPA 173 (624)
Q Consensus 98 ~~~~a~~~~~~~~~-~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 173 (624)
.+..|+++...|.. |+...-..-+.+.. ..+|+..+..+.++... .+..+.+.......+.|+++.|++-|+...+
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 88888888888875 44433333333333 56888888888888874 5666666666666788999999999888774
Q ss_pred C----ChhHHHHHHHHHHHcCChhHHHHHHHHcccC-----------------Ccc---------------cHHHHHHHH
Q 006955 174 K----DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR-----------------DLT---------------SWKQLINGL 217 (624)
Q Consensus 174 ~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------~~~---------------~~~~l~~~~ 217 (624)
- ....|+. ..++.+.|+++.|++...+++++ |+. .+|.=...+
T Consensus 173 vsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 173 VSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred hcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 3 3344544 44556778899999888887653 111 122223345
Q ss_pred HcCCCHHHHHHHhhhCCC-----CCcchHHHHHHHHH--hcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHH
Q 006955 218 VNSRRIDAAISYFKQMPE-----TCEKTWNSIISVLI--RNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIK 290 (624)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 290 (624)
.+.|+++.|.+.+-.|.. .|+.|...+.-.-. +-++--.-.+++-...|-...+|..++-.||+..-++.|-.
T Consensus 252 yq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAAD 331 (459)
T KOG4340|consen 252 YQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAAD 331 (459)
T ss_pred hhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHH
Confidence 678888888888888874 46666655433222 22332333344444445566788888888888888888888
Q ss_pred HHhhcCC
Q 006955 291 VFELMTT 297 (624)
Q Consensus 291 ~~~~~~~ 297 (624)
++.+-..
T Consensus 332 vLAEn~~ 338 (459)
T KOG4340|consen 332 VLAENAH 338 (459)
T ss_pred HHhhCcc
Confidence 8766544
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.59 E-value=6e-05 Score=74.51 Aligned_cols=267 Identities=10% Similarity=0.008 Sum_probs=165.2
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHHcC-CCCCHHHHH-HHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhH---HH
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKESG-PSPDNATFT-SVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSN---AM 376 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l 376 (624)
.|..+...+...++.+.+...+....... ..++..... .....+...|+++.+..+++...+.. |.+...+. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 34455555666677777666666654432 123332222 22334567899999999999988864 33333333 12
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHD---IISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLV 452 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 452 (624)
.......+..+.+.+.+......+ ......+...+...|++++|...+++..+. .|+ ...+..+...+...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCH
Confidence 222223456666666666533222 234445566788999999999999999984 455 45677778889999999
Q ss_pred HHHHHHHHHhhhhcCCCCCc--chHHHHHHHhhccCChHHHHHHHHHcccCCC-CcCHHHH-H--HHHHHHHhcCChHHH
Q 006955 453 DQGRYYFDCMKNKYFLQPRS--AHYTCVVDLLGRFGLIDEAMNLLNEIRADGI-EVSPTVW-G--ALLGACRIHNNIKVG 526 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~-~--~l~~~~~~~g~~~~a 526 (624)
++|..++++........|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999988742112222 3455788899999999999999999764321 1122111 1 233334455544444
Q ss_pred HHH---HHHHHccCCCC--CchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 527 EIA---GERVMELEPNN--SGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 527 ~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.+. ........|.. +..-.+.+.++...|+.++|..+++.+....
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 333 12211111211 2223367778889999999999999987654
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.58 E-value=4.6e-06 Score=73.07 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=109.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc
Q 006955 405 NSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR 484 (624)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 484 (624)
..+-..+...|+-+....+....... ..-+.......+....+.|++..|...+.++... -+||...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHH
Confidence 44455566667666666666664431 1223334445667777778888888888877762 23477788888888888
Q ss_pred cCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHH
Q 006955 485 FGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRI 563 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 563 (624)
.|++++|..-|.+..+ +.| ++..++.+...+...||.+.|+.++..+....+.|+.+-..|..+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 8888888888887776 444 5667777777777888888888888888777777777788888888888888888776
Q ss_pred HH
Q 006955 564 FA 565 (624)
Q Consensus 564 ~~ 565 (624)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 54
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=3.8e-06 Score=74.05 Aligned_cols=155 Identities=10% Similarity=0.070 Sum_probs=116.2
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGR 456 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 456 (624)
+..|...|+++.+....+.+..+. ..+...++.+++...++...+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777777655543332221 01122566678888888877742 445578888888999999999999
Q ss_pred HHHHHhhhhcCCCC-CcchHHHHHHHh-hccCC--hHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 006955 457 YYFDCMKNKYFLQP-RSAHYTCVVDLL-GRFGL--IDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGE 531 (624)
Q Consensus 457 ~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 531 (624)
..+++..+ +.| +...+..+..++ ...|+ .++|.+++++..+. .| ++..+..+...+...|++++|+..++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999887 456 788888888864 67777 59999999999884 45 67788888889999999999999999
Q ss_pred HHHccCCCCCchHH
Q 006955 532 RVMELEPNNSGVYL 545 (624)
Q Consensus 532 ~~~~~~p~~~~~~~ 545 (624)
++++..|++..-+.
T Consensus 169 ~aL~l~~~~~~r~~ 182 (198)
T PRK10370 169 KVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHhhCCCCccHHH
Confidence 99999987665543
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=1.2e-05 Score=84.24 Aligned_cols=222 Identities=9% Similarity=0.017 Sum_probs=153.6
Q ss_pred HHHHHHHHHcCCCCcHHH-HHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHH
Q 006955 337 TFTSVLTICSDLPTLDLG-RQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLA 412 (624)
Q Consensus 337 ~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 412 (624)
....+=.+.+..|..+++ .++++++.+ ++....+.....+++.-..... ..++..+..|.....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~ 97 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALE 97 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 333344455666766655 445555544 3333333333333322222211 335777888888999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHH
Q 006955 413 YHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDE 490 (624)
Q Consensus 413 ~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 490 (624)
+.|.+++|+.+++...+ +.|+.. ....+...+.+.+++++|....++... ..| +......+..++.+.|++++
T Consensus 98 ~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcchHH
Confidence 99999999999999998 688764 667778889999999999999999887 356 67777888899999999999
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 491 AMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
|..+|+++...+ +-++.++..+..++...|+.+.|...|+++++...+-...|..+. ++...-..+++++.-.
T Consensus 173 A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 245 (694)
T PRK15179 173 ADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHHHHHHHHcCcc
Confidence 999999998732 334789999999999999999999999999987654555555443 3444445566665444
Q ss_pred CCccCCceeEEE
Q 006955 571 GVKKEPGCSWIQ 582 (624)
Q Consensus 571 ~~~~~~~~~~~~ 582 (624)
+.....+.+.+.
T Consensus 246 ~~~~~~~~~~~~ 257 (694)
T PRK15179 246 GDGRDVPVSILV 257 (694)
T ss_pred cccCCCceeeee
Confidence 443333334333
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=6.1e-06 Score=87.86 Aligned_cols=200 Identities=13% Similarity=0.081 Sum_probs=153.4
Q ss_pred CCcchhHHHHHHhHhhCCHHHHHHHhccCCCC--------CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 006955 368 QFTTVSNAMITMYARCGNIQSALLEFSSVPIH--------DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITF 439 (624)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 439 (624)
.+...+-..|..+...++.++|.++.++..+. -...|.++++.-...|.-+...++|+++.+. --....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 33444555666667777777777777766511 2346888888777778788888889888873 3334577
Q ss_pred HHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC---HHHHHHHHHH
Q 006955 440 VGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS---PTVWGALLGA 516 (624)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~ 516 (624)
..|...|.+.+..++|.++++.|.++++ -....|..++..+.+.++-+.|..++.++.+. -|. .....-.++.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 7888888888999999999999988754 56778888888889999889999999887763 343 3344555566
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVK 573 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 573 (624)
-.+.||.+++..+|+..+.-.|.....|..+++.-.++|+.+.+..+|++....+++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 678899999999999999888888888999999999999999999999988887653
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=4e-06 Score=81.37 Aligned_cols=256 Identities=13% Similarity=0.103 Sum_probs=170.2
Q ss_pred HHHHHhcCChHHHHHHHhhcCCC---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCH-HHHHHHHHHHcCCCCc
Q 006955 276 IVGYFEMGEVGSAIKVFELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDN-ATFTSVLTICSDLPTL 351 (624)
Q Consensus 276 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~ 351 (624)
..-+.+.|++.+|.-.|+...+. +...|.-|......+++-..|+..+++-.+. .|+. ...-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhH
Confidence 33456777788887777776654 4456777777777777777777777776654 4543 3444555556666666
Q ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH-HHC
Q 006955 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERM-RLT 430 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m-~~~ 430 (624)
..|...+...+...++-- + +. ...++...-+. ..+..........++|-++ .+.
T Consensus 370 ~~Al~~L~~Wi~~~p~y~---~--l~------------------~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~ 424 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYV---H--LV------------------SAGENEDFENT--KSFLDSSHLAHIQELFLEAARQL 424 (579)
T ss_pred HHHHHHHHHHHHhCccch---h--cc------------------ccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhC
Confidence 666666665555432210 0 00 00000000000 0111111233444444444 445
Q ss_pred CCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HH
Q 006955 431 DFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PT 508 (624)
Q Consensus 431 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~ 508 (624)
+..+|......|.-.|.-.|++++|+..|+.+.. ++| |...||.|...++-..+.++|+..|+++++ ++|. ..
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR 499 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVR 499 (579)
T ss_pred CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeee
Confidence 5456777777777778889999999999999987 568 789999999999999999999999999998 7887 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC-----CC-----chHHHHHHHHHhcCChHHHHHH
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPN-----NS-----GVYLILTEMYLSCGRREDAKRI 563 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~~-----~~~~~l~~~~~~~g~~~~A~~~ 563 (624)
++..|.-+|...|.+++|...|-.++.+.+. .. .++..|=.++...++.|-+.++
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 8888999999999999999999999886654 11 3566666667777776644443
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.50 E-value=1.5e-06 Score=72.11 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=81.5
Q ss_pred CCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHH
Q 006955 468 LQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLI 546 (624)
Q Consensus 468 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 546 (624)
..| +......+...+...|++++|.+.++.+...+ +.++..|..+...+...|+++.|...++++.+..|.++..+..
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 345 44556667777888888888888888877643 3467777888888888888888888888888888888888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.+|...|++++|...+++..+..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 8888888888888888888776653
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=4.7e-06 Score=83.05 Aligned_cols=212 Identities=11% Similarity=-0.008 Sum_probs=157.9
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC--CCCchhHHHHHHHHHHcCCh
Q 006955 340 SVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP--IHDIISWNSIICGLAYHGYA 417 (624)
Q Consensus 340 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 417 (624)
.+...+...|-...|..++..... +.-.+.+|...|+..+|..+..+.. +|++..|..+.+......-+
T Consensus 403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 344455566666667666665432 2346777777787777776665443 56777777777776666667
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHH
Q 006955 418 EKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 418 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
++|.++.+.--.. .-..+.....+.++++++.+.|+.-.+ +.| ...+|-.+.-+..+.++++.|.+.|.
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 7777777654321 111222223446888888888888776 445 67788888888889999999999999
Q ss_pred HcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006955 497 EIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 497 ~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 572 (624)
.... ..|| ...|+.+-.+|.+.|+-.+|...+.++.+.+-.+..++...+-..+.-|.+++|.+.+.++.+...
T Consensus 544 rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 544 RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 9887 5775 569999999999999999999999999998877888888888899999999999999999876543
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=8.3e-05 Score=83.57 Aligned_cols=355 Identities=10% Similarity=-0.044 Sum_probs=221.7
Q ss_pred HHHHHHcCChhHHHHHHHHcccCCccc--HHHHHHHHHcCCCHHHHHHHhhhCCC----CCcchHHHHHHHHHhcCChHH
Q 006955 183 IAGYLDNGCVGVAEDLFQKMHDRDLTS--WKQLINGLVNSRRIDAAISYFKQMPE----TCEKTWNSIISVLIRNGLVKE 256 (624)
Q Consensus 183 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~ 256 (624)
...+...|++.+|..........+... ...........|+++.+..++..+.. .++.........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344555666666666555554332111 12223345567888888888877642 233333444556677889999
Q ss_pred HHHHHhhcC----CCC---c-----chhhHHHHHHHhcCChHHHHHHHhhcCC--C--Cc----eehhhhhhHhhcCCCc
Q 006955 257 AHSYLEKYP----YSN---I-----ASWTNVIVGYFEMGEVGSAIKVFELMTT--R--DV----TVWNVMIFGLGENDLG 316 (624)
Q Consensus 257 a~~~~~~~~----~~~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~~~~~ 316 (624)
+...+..+. ..+ . .....+...+...|++++|...++.... + +. ...+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 888877654 111 1 1122233456678999999998887643 1 21 2345556667889999
Q ss_pred hHHHHHHHHhHHcCC---CC--CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----CCCC---CcchhHHHHHHhHhhC
Q 006955 317 EEGLKFFVQMKESGP---SP--DNATFTSVLTICSDLPTLDLGRQIHAQAIKI----ARNQ---FTTVSNAMITMYARCG 384 (624)
Q Consensus 317 ~~a~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g 384 (624)
++|...+.+.....- .+ ...++..+...+...|+++.|...+.+.... +... ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999988764311 11 1234455566778899999999998876553 2211 1223445566777889
Q ss_pred CHHHHHHHhccCCC------C--CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChhhH-----HHHHHHhcccC
Q 006955 385 NIQSALLEFSSVPI------H--DIISWNSIICGLAYHGYAEKALELFERMRLTDFK-PDDITF-----VGVLSACSYAG 450 (624)
Q Consensus 385 ~~~~A~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~-----~~ll~~~~~~g 450 (624)
++++|...+++... + ....+..+...+...|+++.|...+.+.....-. .....+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 99999888876641 1 1233444566778899999999999887552111 111111 11123345578
Q ss_pred hHHHHHHHHHHhhhhcCCCCCcc----hHHHHHHHhhccCChHHHHHHHHHcccC----CCCcC-HHHHHHHHHHHHhcC
Q 006955 451 LVDQGRYYFDCMKNKYFLQPRSA----HYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEVS-PTVWGALLGACRIHN 521 (624)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g 521 (624)
+.+.|.+++....... ..... .+..+..++...|+.++|...+++..+. |..++ ..+...+..++...|
T Consensus 668 ~~~~A~~~l~~~~~~~--~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 668 DKEAAANWLRQAPKPE--FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CHHHHHHHHHhcCCCC--CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 9999999987755421 11111 1346777888999999999999987653 32222 235556667788999
Q ss_pred ChHHHHHHHHHHHccCCC
Q 006955 522 NIKVGEIAGERVMELEPN 539 (624)
Q Consensus 522 ~~~~a~~~~~~~~~~~p~ 539 (624)
+.++|...+.+++++...
T Consensus 746 ~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 746 RKSEAQRVLLEALKLANR 763 (903)
T ss_pred CHHHHHHHHHHHHHHhCc
Confidence 999999999999996643
No 117
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.46 E-value=0.00037 Score=67.52 Aligned_cols=149 Identities=13% Similarity=0.052 Sum_probs=89.1
Q ss_pred CchHHHHHHHHhHHcC-CCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCC-CcchhHHHHHHhHhhCCHHHHHHH
Q 006955 315 LGEEGLKFFVQMKESG-PSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQ-FTTVSNAMITMYARCGNIQSALLE 392 (624)
Q Consensus 315 ~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 392 (624)
+.+.....++++...- +.|+ .+|...++...+..-+..|+.+|.++.+.+..+ ++.++++++..||. ++..-|..+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrI 423 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRI 423 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHH
Confidence 3555556666554432 2333 345566666666667777777777777766555 66666666666653 455666666
Q ss_pred hccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccChHHHHHHHHHHhhhh
Q 006955 393 FSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACSYAGLVDQGRYYFDCMKNK 465 (624)
Q Consensus 393 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 465 (624)
|+.-. ..++.--...+..+...++-..+..+|++....++.|+. ..|..++.--+.-|++..+.++-++....
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66443 223333444555566666666677777776666555554 46666666666667766666666655544
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=3.2e-05 Score=73.95 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=79.8
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCh
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNI 523 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 523 (624)
+...|..+.|+..++.+.+. .| |+..+....+.+.+.|+.++|.+.++++.. ..|+ +..+-.+..++.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCCh
Confidence 44567777777777776663 24 555566667777777777777777777776 4555 55666677777777777
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 524 KVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
.+|+..+......+|+||..|..|+.+|...|+..++.....++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77777777777777777777777777777666655555444443
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=1.4e-05 Score=79.82 Aligned_cols=232 Identities=10% Similarity=0.061 Sum_probs=173.4
Q ss_pred CCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHc
Q 006955 267 SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICS 346 (624)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 346 (624)
|--..-..+...+.+.|-...|..+|+++ ..|...+.+|...|+..+|..+..+..+. +||+.-|..+.....
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33334456778889999999999999865 46788899999999999999999887773 888899988888887
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHH
Q 006955 347 DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
...-+++|.++.+..... .-..+.......++++++.+.|+.-. +-...+|..+..+..+.++++.|.+.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 777788888887754332 11112222334678888888887654 33456788888888888999999999
Q ss_pred HHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCC
Q 006955 424 FERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG 502 (624)
Q Consensus 424 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (624)
|..... ..|+. ..|+.+-.+|.+.|+..+|...+++..+-. .-+...|...+-....-|.+++|++.+.++.+..
T Consensus 542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 988877 57765 689999999999999999999999888742 3456677777778888899999999988876532
Q ss_pred C-CcCHHHHHHHHHH
Q 006955 503 I-EVSPTVWGALLGA 516 (624)
Q Consensus 503 ~-~p~~~~~~~l~~~ 516 (624)
. .-|+.+...++..
T Consensus 618 ~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRT 632 (777)
T ss_pred hhcccchhhHHHHHH
Confidence 1 1245555555444
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=3.6e-07 Score=53.80 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=20.7
Q ss_pred CCCCCcchHHHHHHHhhccCChHHHHHHHHHc
Q 006955 467 FLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEI 498 (624)
Q Consensus 467 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (624)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666665
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.41 E-value=1.2e-05 Score=70.45 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=114.6
Q ss_pred HHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChH
Q 006955 376 MITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLV 452 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 452 (624)
+-..+...|+-+....+..+.. ..|.......+....+.|++..|+..+++.... -+||..+|+.+.-+|.+.|++
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 3444445555555555555433 234445566777888889999999999888774 255667888888889999999
Q ss_pred HHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006955 453 DQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGE 531 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 531 (624)
+.|..-+.+..+ +.| ++..++.+...|.-.|+.+.|..++......+ .-|..+-..|..+....|+++.|+.+..
T Consensus 151 ~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 151 DEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999988888887 445 67788888888888999999999988887643 3367778888888888999999888766
Q ss_pred HHH
Q 006955 532 RVM 534 (624)
Q Consensus 532 ~~~ 534 (624)
.-+
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 543
No 122
>PLN02789 farnesyltranstransferase
Probab=98.40 E-value=7.8e-05 Score=70.82 Aligned_cols=163 Identities=11% Similarity=0.034 Sum_probs=105.4
Q ss_pred CHHHHHHHhccCC---CCCchhHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHH
Q 006955 385 NIQSALLEFSSVP---IHDIISWNSIICGLAYHGYA--EKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYY 458 (624)
Q Consensus 385 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 458 (624)
++++++..++++. +.+..+|+.-...+.+.|+. ++++.+++++.+. .| |..+|.....++...|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3566666665554 33444566555455555542 5677777777763 44 446777777777777888888888
Q ss_pred HHHhhhhcCCCC-CcchHHHHHHHhhcc---CC----hHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhc----CChHH
Q 006955 459 FDCMKNKYFLQP-RSAHYTCVVDLLGRF---GL----IDEAMNLLNEIRADGIEV-SPTVWGALLGACRIH----NNIKV 525 (624)
Q Consensus 459 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~----g~~~~ 525 (624)
++++.+. .| |...|+....++.+. |. .+++++...+++. ..| +...|+-+...+... +...+
T Consensus 165 ~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 165 CHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred HHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 8888763 34 666666655555443 22 2456666666665 344 566777777777652 34466
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006955 526 GEIAGERVMELEPNNSGVYLILTEMYLSC 554 (624)
Q Consensus 526 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 554 (624)
|...+.++...+|.++.++..|+..|...
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 88888888888888888888888888764
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.40 E-value=2.5e-05 Score=83.37 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=95.1
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHH
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD---ITFVGVLSA 445 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~ 445 (624)
+|..|...|.+.++.++|.++++.|. ......|...+..+.++++-++|..++.+..+. -|.. ....-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 34445555555555555555555554 224456777777777777777777777777663 4442 223333344
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCC
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNN 522 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~ 522 (624)
-.+.|+.++++.+|+.....+ | ....|+.+++.-.+.|+.+.+..+|++....++.|- ...|.-.+..-..+||
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay---PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY---PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC---ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 456677777777777777643 4 566777777777777777777777777777666653 2244444444445565
Q ss_pred hHHHHHHHHHHHc
Q 006955 523 IKVGEIAGERVME 535 (624)
Q Consensus 523 ~~~a~~~~~~~~~ 535 (624)
-+.++.+-.++.+
T Consensus 1687 e~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1687 EKNVEYVKARAKE 1699 (1710)
T ss_pred hhhHHHHHHHHHH
Confidence 5555544444433
No 124
>PLN02789 farnesyltranstransferase
Probab=98.40 E-value=2.4e-05 Score=74.18 Aligned_cols=186 Identities=10% Similarity=0.071 Sum_probs=135.5
Q ss_pred hHhhCCHHHHHHHhccCCC---CCchhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccCh--H
Q 006955 380 YARCGNIQSALLEFSSVPI---HDIISWNSIICGLAYHG-YAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGL--V 452 (624)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~--~ 452 (624)
+...++.++|+.+.+++.. .+..+|+.-..++...| ++++++..++++.+. .|+ ..+|+.-...+.+.|+ .
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhh
Confidence 3345566777777776662 24446666666666667 679999999999885 443 3466655444555555 3
Q ss_pred HHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc---CCh----H
Q 006955 453 DQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH---NNI----K 524 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~----~ 524 (624)
+++..+++++.+ ..| |..+|+....++...|+++++++.++++++.+ .-+...|+....+.... |.. +
T Consensus 125 ~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 125 NKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHH
Confidence 677888888886 456 78889999999999999999999999999854 33566777666655443 222 5
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhc----CChHHHHHHHHHHHHCC
Q 006955 525 VGEIAGERVMELEPNNSGVYLILTEMYLSC----GRREDAKRIFAQMKENG 571 (624)
Q Consensus 525 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~ 571 (624)
.+..+..+++..+|.|...+..+..++... ++..+|.+...+....+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 678888899999999999999999999883 45577888887766544
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00011 Score=64.62 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=69.6
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cChH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY----AGLV 452 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~ 452 (624)
...|...|++++|++...... +......=+..+.+..+.+-|.+.+++|.+ --+..|.+-|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhh
Confidence 334555555555555555422 111222222334455556666666666654 2233444434333322 2345
Q ss_pred HHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHH
Q 006955 453 DQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN-NIKVGEIAGE 531 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~ 531 (624)
..|.-+|+++.++ ..|++.+.+....++...|++++|..++++..... .-++.++..++-.....| +.+...+...
T Consensus 190 qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 190 QDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5555555555543 33455555555555555555555555555554432 223444433333332332 2233334444
Q ss_pred HHHccCC
Q 006955 532 RVMELEP 538 (624)
Q Consensus 532 ~~~~~~p 538 (624)
++....|
T Consensus 267 QLk~~~p 273 (299)
T KOG3081|consen 267 QLKLSHP 273 (299)
T ss_pred HHHhcCC
Confidence 4444444
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.36 E-value=1.6e-05 Score=73.19 Aligned_cols=159 Identities=12% Similarity=0.034 Sum_probs=99.3
Q ss_pred HHHHHhHhhCCHHHHHHHhccCC--CC-Cc---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----hHHHHHH
Q 006955 375 AMITMYARCGNIQSALLEFSSVP--IH-DI---ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI----TFVGVLS 444 (624)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~--~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~ 444 (624)
.+...+...|+++.|...|+++. .| ++ .++..+..++...|++++|...++++.+. .|+.. ++..+..
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~g~ 115 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAYYLRGL 115 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHHHHHHH
Confidence 34445555566666666655544 11 11 24455566666667777777777766653 33222 2333333
Q ss_pred Hhccc--------ChHHHHHHHHHHhhhhcCCCCCc-chH-----------------HHHHHHhhccCChHHHHHHHHHc
Q 006955 445 ACSYA--------GLVDQGRYYFDCMKNKYFLQPRS-AHY-----------------TCVVDLLGRFGLIDEAMNLLNEI 498 (624)
Q Consensus 445 ~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~ 498 (624)
++... |+.+.|.+.++.+.+.+ |+. ..+ ..+...|.+.|++.+|+..+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 116 SNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 33332 56667777777766532 422 111 24566788899999999999998
Q ss_pred ccCCC-Cc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 499 RADGI-EV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 499 ~~~g~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
.+..- .| .+..+..+..++...|++++|..+++.+....|
T Consensus 193 l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 193 VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 76420 12 356888999999999999999999988877665
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=3.5e-05 Score=67.07 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=54.5
Q ss_pred ccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGE 527 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 527 (624)
..|++++|.++++.+.++. +.|..++..-+-..-..|+.-+|++-+.+..+. +..|...|.-|...|...|++++|.
T Consensus 98 a~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 3444555555555544431 113334443333344444444444444444432 3344455555555555555555555
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhcC---ChHHHHHHHHHHHHC
Q 006955 528 IAGERVMELEPNNSGVYLILTEMYLSCG---RREDAKRIFAQMKEN 570 (624)
Q Consensus 528 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~ 570 (624)
-.+++++-.+|.++..+..++..+.-.| +.+-|.+++.+..+.
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555554444332 233444444444443
No 128
>PF12854 PPR_1: PPR repeat
Probab=98.34 E-value=6e-07 Score=52.85 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=25.4
Q ss_pred CCCCCChhhHHHHHHHhcccChHHHHHHHHHHh
Q 006955 430 TDFKPDDITFVGVLSACSYAGLVDQGRYYFDCM 462 (624)
Q Consensus 430 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 462 (624)
+|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367777778888888888888888887777776
No 129
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.32 E-value=7e-06 Score=66.98 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=85.6
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
....-.+...+...|++++|.++|+-... +.| +..-|-.|..+|...|++++|+..|.++..++|++|..+..++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34444566667789999999999999876 556 567888999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 006955 551 YLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 551 ~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+...|+.+.|.+.|+......
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999876653
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.32 E-value=9.9e-06 Score=78.29 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=102.7
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACR 518 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (624)
...++..+...++++.|..+++++.+. .|+ ....++..+...++-.+|++++++..... +.+...+......+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345666677788999999999998874 244 45568888888889999999999988632 336666676677788
Q ss_pred hcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 519 IHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 519 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
..++++.|..+.+++.+..|.+..+|..|+.+|...|++++|+-.++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888764
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.31 E-value=6.7e-05 Score=79.50 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
.++..+-..|...++++++..+++.+++.+|.|..+..-++.+|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 344445555666667777777777777777777666666666665
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=3.9e-05 Score=66.75 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=124.4
Q ss_pred cCChHHHHHHHHHHHH---CC-CCCChh-hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCC
Q 006955 414 HGYAEKALELFERMRL---TD-FKPDDI-TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGL 487 (624)
Q Consensus 414 ~~~~~~a~~~~~~m~~---~g-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 487 (624)
..++++.++++.++.. .| ..|+.. .+..++-+....|+.+.|...++.+...+ | +...-..-.-.+...|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhc
Confidence 4578888888888764 34 556664 45566667778899999999999998863 5 33333333445567899
Q ss_pred hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 488 IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
+++|+++++..++.. +.|..++.--+......|+.-+|++.+...++..|.|+..|..|+..|...|++++|.-.++++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999999864 4467777777778888999999999999999999999999999999999999999999999999
Q ss_pred HHCC
Q 006955 568 KENG 571 (624)
Q Consensus 568 ~~~~ 571 (624)
.=..
T Consensus 181 ll~~ 184 (289)
T KOG3060|consen 181 LLIQ 184 (289)
T ss_pred HHcC
Confidence 7654
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.23 E-value=0.01 Score=61.54 Aligned_cols=535 Identities=12% Similarity=0.056 Sum_probs=241.4
Q ss_pred HhcCChHHHHHHHhhCCCCCc-chHHHHHHHH--HcCCChhhHHHHHhcCC---CCCchhHHHHHHHHHhCCChhHHHHH
Q 006955 32 FKNGFLDNAMCLFNQMPERDM-FTYNTVIAGL--MQSDNVQGAKEVFDGME---VRDVVTWNSMISGYVCNGLIDEALRV 105 (624)
Q Consensus 32 ~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~--~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~ 105 (624)
...+++.+|+....+..+..+ ..|..++.++ .+.|+.++|..+++... ..|..|...+-.+|...|+.++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 345677777777777763222 2344455554 47788888888888665 34777888888888888888888888
Q ss_pred hccCCC--CCcccHHHHHHHHHcCCChHH----HHHHHHhcccCChhHHHHHHHHHHhC-CCh---------HHHHHHhc
Q 006955 106 FHGMPL--KDVVSWNLVIGALVNCQRMDL----AESYFKEMGARDVASWTIMVNGLVRE-GRI---------VEARKLFD 169 (624)
Q Consensus 106 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~---------~~a~~~~~ 169 (624)
|++..+ |+......+..+|+|.+++.+ |.++++...+ ++..+=++++.+... ... .-|.+.++
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 888876 665556666777777766654 4445543332 233332333332221 111 11333333
Q ss_pred cCCCCC-----hhHHHHHHHHHHHcCChhHHHHHHH-Hccc----CCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcc
Q 006955 170 KMPAKD-----VQAWNLMIAGYLDNGCVGVAEDLFQ-KMHD----RDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEK 239 (624)
Q Consensus 170 ~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 239 (624)
.+.+.+ ..-.......+...|++++|..++. ...+ .+...-+--+..+...++|.+-.++..++...+..
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 333222 1111111223344566666666662 2211 12222233344555555665555555444432111
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCC-CceehhhhhhHhh---cCCC
Q 006955 240 TWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTR-DVTVWNVMIFGLG---ENDL 315 (624)
Q Consensus 240 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~---~~~~ 315 (624)
-|....+.. .++++..-.+.... .+...+..+...+..++.... .--.|-+-+..+. .-|+
T Consensus 259 dy~~~~~sv---------~klLe~~~~~~a~~------~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd 323 (932)
T KOG2053|consen 259 DYKIYTDSV---------FKLLELLNKEPAEA------AHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGD 323 (932)
T ss_pred chHHHHHHH---------HHHHHhcccccchh------hhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCC
Confidence 122222211 11111110011110 111122233333332222211 1122333333322 3466
Q ss_pred chHHHHHHHHhHHcCCCC-------------CHHHHHHHHHHHcCC-CCcHHHHHHHHHHH-------HhCC--CCCcch
Q 006955 316 GEEGLKFFVQMKESGPSP-------------DNATFTSVLTICSDL-PTLDLGRQIHAQAI-------KIAR--NQFTTV 372 (624)
Q Consensus 316 ~~~a~~~~~~m~~~~~~p-------------~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~-------~~~~--~~~~~~ 372 (624)
.++++..|-+- -|-+| +......++..+... ++.....+.+..-. -.|. ..+...
T Consensus 324 ~ee~~~~y~~k--fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 324 SEEMLSYYFKK--FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred hHHHHHHHHHH--hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 66655444221 12122 111112222222221 11111111111100 0010 000000
Q ss_pred h----HHHHHHhHhhCCHHHHHHHhccCCCC-----Cc---hhHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCC-Ch
Q 006955 373 S----NAMITMYARCGNIQSALLEFSSVPIH-----DI---ISWNSIICGLAYHGYAE---KALELFERMRLTDFKP-DD 436 (624)
Q Consensus 373 ~----~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~g~~p-~~ 436 (624)
. ..++..|.+. ..+=..+.+. +. .+-+.|+..+.+.++.. +|+-+++.-... .| |.
T Consensus 402 i~a~~~kl~~~ye~g------ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf 473 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKG------LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNF 473 (932)
T ss_pred HHHHHHHHHHHHhcc------ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccH
Confidence 0 0111111110 0000000000 01 24566777788877765 344444444432 33 33
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+-..++..|+-.|-+..|.+.++.+.-+ .+..|...|. +...+...|++..+...+++...- +.-+..--.-+|..
T Consensus 474 ~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~ 550 (932)
T KOG2053|consen 474 QTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIAL 550 (932)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHH
Confidence 45556777888888888888888877654 2544433332 334556677888888888775531 01111111122333
Q ss_pred HHhcCChHHHHHHHHHHHccCCC----CCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEE--cCeEEEE
Q 006955 517 CRIHNNIKVGEIAGERVMELEPN----NSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQI--NDGGHVF 590 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~--~~~~~~~ 590 (624)
..+.|.+.+..++..--.++.-. -..+=..........++.++-...+..|+-.-.+.+. .|..+ +.+..+|
T Consensus 551 AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~~e~~I--~w~~L~DNRDl~~~ 628 (932)
T KOG2053|consen 551 AYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMKLPPSEDRI--QWVSLSDNRDLNAI 628 (932)
T ss_pred HHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccCcchhhc--cccccccccccccc
Confidence 34677777666554433333221 1122334455566677888777777766522111222 34433 3557777
Q ss_pred eeCCCCC
Q 006955 591 LSGDSSH 597 (624)
Q Consensus 591 ~~~~~~~ 597 (624)
..=++.|
T Consensus 629 ~~w~p~~ 635 (932)
T KOG2053|consen 629 PYWDPED 635 (932)
T ss_pred ccCCCcc
Confidence 6555544
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.22 E-value=2.2e-05 Score=65.10 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=89.8
Q ss_pred HHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 423 LFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 423 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
++++... ..|+. .....+...+...|+.++|.+.++.+... .| +...+..+...+...|++++|..++++..+
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455554 45544 44556667788889999999999988773 35 778888899999999999999999998876
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 006955 501 DGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 501 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 542 (624)
.+ +.++..+..+...+...|+++.|...++++++..|.++.
T Consensus 80 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 LD-PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 43 446778888888889999999999999999999996654
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00025 Score=68.11 Aligned_cols=145 Identities=19% Similarity=0.134 Sum_probs=117.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHhcccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHH
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV-GVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDL 481 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 481 (624)
+.-....+...|.+++|+..++.+... .|+...|. .....+...++..+|.+.++++.. ..|+ ....-.+..+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHH
Confidence 333344566788999999999999884 66666555 445678999999999999999987 4575 5566688999
Q ss_pred hhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAK 561 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 561 (624)
|.+.|++.+|+.++++.... .+-|+..|..|.++|...|+..++... .++.|...|++++|.
T Consensus 384 ll~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 99999999999999998765 366899999999999999997776654 455678889999999
Q ss_pred HHHHHHHHCC
Q 006955 562 RIFAQMKENG 571 (624)
Q Consensus 562 ~~~~~m~~~~ 571 (624)
..+.+.++..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9999888775
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00022 Score=62.79 Aligned_cols=151 Identities=12% Similarity=0.064 Sum_probs=118.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhh----
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLG---- 483 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 483 (624)
...|...+++++|++...... ..+ ....=...+.+..+++-|.+.+++|.+ + .+..+.+.|..++.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLE--AAALNVQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhc
Confidence 345788999999999987722 222 222223345677889999999999986 2 35666776666664
Q ss_pred ccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHH-
Q 006955 484 RFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKR- 562 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~- 562 (624)
-.+...+|.-+|++|.+. .+|++.+.+....++...|++++|+.+++.++..++++|.++..++-+-...|...++.+
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 345799999999999865 589999999999999999999999999999999999999999999999999998877665
Q ss_pred HHHHHHH
Q 006955 563 IFAQMKE 569 (624)
Q Consensus 563 ~~~~m~~ 569 (624)
.+.+++.
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 5555544
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=5.6e-05 Score=79.31 Aligned_cols=162 Identities=9% Similarity=-0.002 Sum_probs=123.6
Q ss_pred CCCCcHHHHHHHHHHHH--hCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHH
Q 006955 347 DLPTLDLGRQIHAQAIK--IARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKAL 421 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 421 (624)
..+.+..+...+-++.. ...+.+...+-.|.....+.|..++|+.+++... +.+...+..++..+.+.+++++|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~ 140 (694)
T PRK15179 61 RHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGR 140 (694)
T ss_pred HhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHH
Confidence 44444444444443332 3456667788888999999999999999999877 345567777888999999999999
Q ss_pred HHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcc
Q 006955 422 ELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 422 ~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (624)
..+++... ..|+.. ....+..++.+.|+.++|..+|+++... .| +...+..+...+...|+.++|...|++..
T Consensus 141 ~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 141 AEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988 467664 5556667888999999999999999873 25 57888899999999999999999999987
Q ss_pred cCCCCcCHHHHHHHH
Q 006955 500 ADGIEVSPTVWGALL 514 (624)
Q Consensus 500 ~~g~~p~~~~~~~l~ 514 (624)
+.. .|....|+.++
T Consensus 216 ~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 216 DAI-GDGARKLTRRL 229 (694)
T ss_pred Hhh-CcchHHHHHHH
Confidence 652 45555554443
No 138
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.14 E-value=0.01 Score=57.99 Aligned_cols=433 Identities=13% Similarity=0.135 Sum_probs=238.3
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHHHhcccC---ChhHHHHHHHHHHhCCChHHHHHHhccCCCC--ChhHHHHHHHHHH
Q 006955 113 DVVSWNLVIGALVNCQRMDLAESYFKEMGAR---DVASWTIMVNGLVREGRIVEARKLFDKMPAK--DVQAWNLMIAGYL 187 (624)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~ 187 (624)
|+.+|+.|++-+... -.+++.+.++++..+ .+..|..-+..-.+.++++..+++|.+.+.. +...|...++.--
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR 97 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVR 97 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 677899999877666 899999999999863 6678888889999999999999999888743 7777877776433
Q ss_pred H-cCChhH----HHHHHHHcccC---Ccc---cHHHHHHHH---------HcCCCHHHHHHHhhhCCC-C---------C
Q 006955 188 D-NGCVGV----AEDLFQKMHDR---DLT---SWKQLINGL---------VNSRRIDAAISYFKQMPE-T---------C 237 (624)
Q Consensus 188 ~-~g~~~~----A~~~~~~~~~~---~~~---~~~~l~~~~---------~~~~~~~~A~~~~~~~~~-~---------~ 237 (624)
+ +|+... ..+.|+-...+ |+. .|+..+..+ ..+.+++...+++.++.. | |
T Consensus 98 ~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~D 177 (656)
T KOG1914|consen 98 ETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKD 177 (656)
T ss_pred HHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 3 233332 33334333332 222 244444332 223345566666666654 2 1
Q ss_pred cchHHHHHHHHH-------hcCChHHHHHHHhhcCCCCcchhhHHHHHHHhc-------CChHHHHHHHhhcCCCCceeh
Q 006955 238 EKTWNSIISVLI-------RNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEM-------GEVGSAIKVFELMTTRDVTVW 303 (624)
Q Consensus 238 ~~~~~~ll~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-------g~~~~A~~~~~~~~~~~~~~~ 303 (624)
-.+|..-++... +...+..|.++++++. .+..++.+. |-.++..+ +..|
T Consensus 178 Y~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~--------~lt~GL~r~~~~vp~~~T~~e~~q---------v~~W 240 (656)
T KOG1914|consen 178 YEAFEQEINIITARKFIGERSPEYMNARRVYQELQ--------NLTRGLNRNAPAVPPKGTKDEIQQ---------VELW 240 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH--------HHHhhhcccCCCCCCCCChHHHHH---------HHHH
Confidence 111211111110 1112223333333222 000000000 00001000 0011
Q ss_pred hhhhhHhhcCC------C--chHHHHHHHH-hHHcCCCCCHHHH-HHHHH----HHcCCCC-------cHHHHHHHHHHH
Q 006955 304 NVMIFGLGEND------L--GEEGLKFFVQ-MKESGPSPDNATF-TSVLT----ICSDLPT-------LDLGRQIHAQAI 362 (624)
Q Consensus 304 ~~l~~~~~~~~------~--~~~a~~~~~~-m~~~~~~p~~~~~-~~ll~----~~~~~~~-------~~~a~~~~~~~~ 362 (624)
-.+|.-=..++ . .....-.+++ |.--+..|+..-. ...+. .+...|+ -+++..+++..+
T Consensus 241 ~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I 320 (656)
T KOG1914|consen 241 KNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAI 320 (656)
T ss_pred HHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 11111100000 0 0011112222 1222333333211 11111 1222233 234444554444
Q ss_pred HhCCCCCcchhHHHHHHhHhhC---CHHHHHHHhccCC----CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-
Q 006955 363 KIARNQFTTVSNAMITMYARCG---NIQSALLEFSSVP----IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP- 434 (624)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p- 434 (624)
..-...+..+|..+.+.--..- ..+.....++++. ..-..+|..+++.-.+..-...|..+|.+.++.+..+
T Consensus 321 ~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h 400 (656)
T KOG1914|consen 321 EGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH 400 (656)
T ss_pred HHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc
Confidence 3322223333333222111111 1333344444443 2233468888888888888999999999999988888
Q ss_pred ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHH
Q 006955 435 DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGA 512 (624)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~ 512 (624)
.....++++..++ .++.+.|.++|+--.+.+| -++......++.+...|+-..|..+|++....+++|+ ..+|..
T Consensus 401 hVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r 477 (656)
T KOG1914|consen 401 HVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR 477 (656)
T ss_pred hhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH
Confidence 4556666766554 5788999999998887642 2344445778888899999999999999998877776 459999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCC----CchHHHHHHHHHhcCChHHHHHHHHH
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNN----SGVYLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
++.--..-||...+.++-++.....|.+ ...-..+..-|.-.+.+.--..-++.
T Consensus 478 ~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 478 MLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 9999899999999999999888766632 12345555666666665544444333
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.13 E-value=5.7e-05 Score=63.22 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=68.5
Q ss_pred cChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCChHH
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNNIKV 525 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~ 525 (624)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+...+..-.|+ +.....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666666431111 122233455666677777777777777766431121 1233445566667777777
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 006955 526 GEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 526 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
|...++.. ...+..+..+..++.+|...|++++|...|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777553 22333555677777777777777777777764
No 140
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.09 E-value=0.0059 Score=58.28 Aligned_cols=425 Identities=9% Similarity=0.046 Sum_probs=209.3
Q ss_pred cCCChHHHHHHHHhcccC---Ch------hHHHHHHHHHHhCCChHHHHHHhccCCCC-ChhHHHHHH--HHHHHcCChh
Q 006955 126 NCQRMDLAESYFKEMGAR---DV------ASWTIMVNGLVREGRIVEARKLFDKMPAK-DVQAWNLMI--AGYLDNGCVG 193 (624)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~---~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~--~~~~~~g~~~ 193 (624)
+.+++.+|..+|.++.+. ++ ..-+.++++|... +++.....+.+..+. ....|-.+. -.+.+.+++.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 568888888888877642 21 2234455665543 344444444433321 122333333 3445677888
Q ss_pred HHHHHHHHcccC------------------CcccHHHHHHHHHcCCCHHHHHHHhhhCCC--------CCcchHHHHHHH
Q 006955 194 VAEDLFQKMHDR------------------DLTSWKQLINGLVNSRRIDAAISYFKQMPE--------TCEKTWNSIISV 247 (624)
Q Consensus 194 ~A~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~ll~~ 247 (624)
+|.+.+...... |...-+..+.++...|++.++..+++++.. =+..+|+.++-.
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 888877665432 111123455666677777777777766653 144455554433
Q ss_pred HHhcCChHHHHHHHhhcCCCC-cchhhHHHHHHHhcC-ChHHHHHHHhhcCCCCceehhhhhhHhhc--CCCchHHHHHH
Q 006955 248 LIRNGLVKEAHSYLEKYPYSN-IASWTNVIVGYFEMG-EVGSAIKVFELMTTRDVTVWNVMIFGLGE--NDLGEEGLKFF 323 (624)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~ 323 (624)
+.+.=-++--.. + ..+ ..-|..++..|.+.= ..+. . -+++.. |.......++....- ..+..--+.++
T Consensus 177 lsrSYfLEl~e~----~-s~dl~pdyYemilfY~kki~~~d~-~-~Y~k~~-peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 177 LSRSYFLELKES----M-SSDLYPDYYEMILFYLKKIHAFDQ-R-PYEKFI-PEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HhHHHHHHHHHh----c-ccccChHHHHHHHHHHHHHHHHhh-c-hHHhhC-cHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 332211111000 0 011 111333333333211 1110 0 000000 000011111111111 11122223333
Q ss_pred HHhHHcCCCCCHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCC----CcchhHHHHHHhHhhCCHHHHHHHhccCC-
Q 006955 324 VQMKESGPSPDNAT-FTSVLTICSDLPTLDLGRQIHAQAIKIARNQ----FTTVSNAMITMYARCGNIQSALLEFSSVP- 397 (624)
Q Consensus 324 ~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 397 (624)
+.-...-+.|+... ...+...+.. +.+.+..+-+.+....+.+ -+..+..++....+.++...|.+.+.-+.
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33333334555332 2233333333 4444444443333321111 12344556666667777777766665443
Q ss_pred -CCCchhH-------HHHHHHHH----HcCChHHHHHHHHHHHHCCCCCChh-hHHHHHH---HhcccCh-HHHHHHHHH
Q 006955 398 -IHDIISW-------NSIICGLA----YHGYAEKALELFERMRLTDFKPDDI-TFVGVLS---ACSYAGL-VDQGRYYFD 460 (624)
Q Consensus 398 -~~~~~~~-------~~l~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~---~~~~~g~-~~~a~~~~~ 460 (624)
+|+...- ..+-+..+ ..-+..+-+.+|+..... ..|.. ....++. -+-+.|. -+.|..+++
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~--DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY--DIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3322211 11111111 112334445566666553 33332 1122222 2344454 788899988
Q ss_pred HhhhhcCCCC-CcchHHHHHH----Hhhc---cCChHHHHHHHHHcccCCCCcC----HHHHHHHHHH--HHhcCChHHH
Q 006955 461 CMKNKYFLQP-RSAHYTCVVD----LLGR---FGLIDEAMNLLNEIRADGIEVS----PTVWGALLGA--CRIHNNIKVG 526 (624)
Q Consensus 461 ~~~~~~~~~p-~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~--~~~~g~~~~a 526 (624)
.+.+ +.| |..+-|.+.. .|.. ...+.+-.++-+-+.+.|++|- ...-+.|..| ...+|++.++
T Consensus 405 ~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc 481 (549)
T PF07079_consen 405 LILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKC 481 (549)
T ss_pred HHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHH
Confidence 8886 445 4444333222 2322 2344555555555667788773 3455667666 4789999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 527 EIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
.-...-+.++.| .+.+|..++-++....++++|..++..+
T Consensus 482 ~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 482 YLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 999999999999 9999999999999999999999999754
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.08 E-value=4.3e-06 Score=62.35 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=58.4
Q ss_pred cCChHHHHHHHHHcccCCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHH
Q 006955 485 FGLIDEAMNLLNEIRADGI-EVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRI 563 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 563 (624)
.|+++.|+.+++++.+..- .|+...+..+..++...|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4677888888888776321 11445566677888888888888888888 667776767777778888888888888888
Q ss_pred HHH
Q 006955 564 FAQ 566 (624)
Q Consensus 564 ~~~ 566 (624)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.07 E-value=3.7e-05 Score=59.06 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=76.8
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSC 554 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 554 (624)
+..++..+...|++++|.+.++++.+.. +.++..+..+...+...|+++.|...++++....|.++..+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4556777788889999999998877642 334467777778888889999999999999998888888888999999999
Q ss_pred CChHHHHHHHHHHHHC
Q 006955 555 GRREDAKRIFAQMKEN 570 (624)
Q Consensus 555 g~~~~A~~~~~~m~~~ 570 (624)
|++++|...+.+..+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999988877554
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=0.0027 Score=67.83 Aligned_cols=232 Identities=10% Similarity=0.036 Sum_probs=131.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCc
Q 006955 240 TWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLG 316 (624)
Q Consensus 240 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (624)
.+..|+..+...+++++|.++.+... +..+..|..+...+.+.++...+..+ .++.......++
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~ 99 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLKW 99 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccch
Confidence 44445555555555555555544333 22233333333344444443333222 233334444455
Q ss_pred hHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccC
Q 006955 317 EEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSV 396 (624)
Q Consensus 317 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (624)
.-+..++..|... .-+...+..+..+|.+.|+.+++..+++.+++.. +.++.+.|.+...|... ++++|++++.+
T Consensus 100 ~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K- 174 (906)
T PRK14720 100 AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK- 174 (906)
T ss_pred hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH-
Confidence 4444444444442 2233456666777777777777777777777766 55677777777778777 88888776544
Q ss_pred CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHH
Q 006955 397 PIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYT 476 (624)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 476 (624)
.+..+...+++.++.++|.++... .|+...+ -.++.+.+....+..--..++-
T Consensus 175 ----------AV~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 175 ----------AIYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred ----------HHHHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhHHHHH
Confidence 334466667888888888888773 4443222 1222333333222222344455
Q ss_pred HHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACR 518 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 518 (624)
.+-..|-..++|+++..+++.+.+ ..| |.....-++.+|.
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH
Confidence 566667777888888888888887 344 4556666776664
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=6.5e-05 Score=60.59 Aligned_cols=96 Identities=18% Similarity=0.082 Sum_probs=62.3
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---CchHHH
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTVWGALLGACRIHNNIKVGEIAGERVMELEPNN---SGVYLI 546 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 546 (624)
++..++..+.+.|++++|.+.++++... .|+ +..+..+..++...|+++.|...++.+....|.+ +..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4445566666677777777777776542 222 2345556666777777777777777777766653 345667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.++.+.|++++|.+.++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7777777777777777777776654
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=1.1e-05 Score=48.37 Aligned_cols=35 Identities=40% Similarity=0.656 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD 436 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 436 (624)
.+||+++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=3.8e-05 Score=68.84 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=82.8
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCh
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNI 523 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 523 (624)
+.+.+++++|+..|.++++ +.| |...|..-..+|.+.|.++.|++-.+..+. +.|. ...|..|..+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 4567788888888888887 566 777777888888888888888888888776 5664 55888888888888888
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChH
Q 006955 524 KVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRE 558 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 558 (624)
++|++.|+++++++|.+......|-.+--..+...
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 88888888888888887766666655544444333
No 147
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.01 E-value=0.029 Score=58.44 Aligned_cols=407 Identities=14% Similarity=0.085 Sum_probs=199.9
Q ss_pred HhCCChHHHHHHhccCCCCChh-HHHHHH--HHHHHcCChhHHHHHHHHccc---CCcccHHHHHHHHHcCCCHHHHHHH
Q 006955 156 VREGRIVEARKLFDKMPAKDVQ-AWNLMI--AGYLDNGCVGVAEDLFQKMHD---RDLTSWKQLINGLVNSRRIDAAISY 229 (624)
Q Consensus 156 ~~~g~~~~a~~~~~~~~~~~~~-~~~~l~--~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (624)
...+++..|.+....+.++.+. .|...+ -.+.+.|+.++|..+++.... .|..+...+-.+|...++.++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 4566777777777776643222 122222 234677888888877776653 3555777777788888888888888
Q ss_pred hhhCCC--CCcchHHHHHHHHHhcCChHH----HHHHHhhcCCCCcchhhHHHHHHHhcCC----------hHHHHHHHh
Q 006955 230 FKQMPE--TCEKTWNSIISVLIRNGLVKE----AHSYLEKYPYSNIASWTNVIVGYFEMGE----------VGSAIKVFE 293 (624)
Q Consensus 230 ~~~~~~--~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~ 293 (624)
++...+ |+......+..++.+.+++.+ |.++++ ..+.++..+=++++.+...-. ..-|.+.++
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 888776 555555566667777766644 333333 224555555455554443211 223444444
Q ss_pred hcCCCCc--ee---hhhhhhHhhcCCCchHHHHHHH-HhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC
Q 006955 294 LMTTRDV--TV---WNVMIFGLGENDLGEEGLKFFV-QMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARN 367 (624)
Q Consensus 294 ~~~~~~~--~~---~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 367 (624)
.+.+.+. .+ ...-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++...|..
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 4443331 00 0111122344566777777773 3333222333333344555566667777777777666666533
Q ss_pred CCcchhHHHHHHhH----------------hhCCHHHHHHHhccCCCC-CchhHHHHHHHHH---HcCChHHHHHHHHHH
Q 006955 368 QFTTVSNAMITMYA----------------RCGNIQSALLEFSSVPIH-DIISWNSIICGLA---YHGYAEKALELFERM 427 (624)
Q Consensus 368 ~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~a~~~~~~m 427 (624)
. |...++.+. ..+..+...+..++.... ....|-+-+.++. .-|+.+++.-.|-+
T Consensus 259 d----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~- 333 (932)
T KOG2053|consen 259 D----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK- 333 (932)
T ss_pred c----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH-
Confidence 2 222222111 111222222222222211 1112322233322 23555554433322
Q ss_pred HHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcc----h---HHHHHHHhhccCC-----hHHHHHHH
Q 006955 428 RLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSA----H---YTCVVDLLGRFGL-----IDEAMNLL 495 (624)
Q Consensus 428 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~---~~~l~~~~~~~g~-----~~~A~~~~ 495 (624)
+-|-.|- +..=+..|...=..+....++...... .++.. . +...+..-...|. .+.-..++
T Consensus 334 -kfg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~ 406 (932)
T KOG2053|consen 334 -KFGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYV 406 (932)
T ss_pred -HhCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHH
Confidence 1111211 111111111111222223333322211 11111 0 1111111111121 11111222
Q ss_pred -------HHcccC--CCCcCH---------HHHHHHHHHHHhcCChH---HHHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006955 496 -------NEIRAD--GIEVSP---------TVWGALLGACRIHNNIK---VGEIAGERVMELEPNNSGVYLILTEMYLSC 554 (624)
Q Consensus 496 -------~~~~~~--g~~p~~---------~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 554 (624)
+.-.+. ++-|+. -+.+.|+..|.+.+|.. +|+-+++.....+|.|+.+-..|+.+|.-.
T Consensus 407 ~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~l 486 (932)
T KOG2053|consen 407 RKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYL 486 (932)
T ss_pred HHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHh
Confidence 111111 122221 13456777888777654 677788888889999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCccC
Q 006955 555 GRREDAKRIFAQMKENGVKKE 575 (624)
Q Consensus 555 g~~~~A~~~~~~m~~~~~~~~ 575 (624)
|-+..|.+.++.+.-+.+..+
T Consensus 487 Ga~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 487 GAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred cCChhHHHHHHhcchHHhhhc
Confidence 999999999998876665443
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.97 E-value=0.00012 Score=71.05 Aligned_cols=119 Identities=10% Similarity=-0.001 Sum_probs=63.4
Q ss_pred HHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHH
Q 006955 376 MITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQ 454 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 454 (624)
|+..+...++++.|+++|+++...++.....++..+...++-.+|.+++++..+. .| +...+..-...|.+.++.+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHH
Confidence 3444444555666666666655444444555555555555555666666555542 22 22333333344555555666
Q ss_pred HHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcc
Q 006955 455 GRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 455 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (624)
|..+.+++.+ ..| +..+|..|+.+|...|+++.|+-.++.+.
T Consensus 253 AL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666655554 334 34455566666666666666665555554
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00011 Score=66.58 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=92.8
Q ss_pred CC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh---cCChHHHHHHHHHHHccCCCCCchH
Q 006955 469 QP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI---HNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 469 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
.| |...|..|...|...|+...|..-|.+..+.. .+++..+..+..++.. ..+..++..++++++..+|.|....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 46 89999999999999999999999999988742 4567788888877533 3466789999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCccCC
Q 006955 545 LILTEMYLSCGRREDAKRIFAQMKENGVKKEP 576 (624)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 576 (624)
..|+..+...|++.+|...|+.|.+...+.+|
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999998754444
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.95 E-value=2.5e-05 Score=55.65 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC-ChHHHHHHHHHHHHC
Q 006955 506 SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG-RREDAKRIFAQMKEN 570 (624)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 570 (624)
++.+|..+...+...|++++|+..|+++++.+|.++.++..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46678888889999999999999999999999999999999999999999 799999999887653
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=2e-05 Score=46.76 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKP 434 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 434 (624)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999888887
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.00014 Score=58.65 Aligned_cols=105 Identities=12% Similarity=0.031 Sum_probs=66.1
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTVWGAL 513 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l 513 (624)
+..+...+...|++++|...++.+.....-.| ....+..+..++.+.|+++.|.+.++++... .|+ +..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHHH
Confidence 34445555666777777777766665321111 1234555777777777777777777776652 232 4456666
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
..++...|+.+.|...++++++..|+++....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 67777778888888888888887776654443
No 153
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.92 E-value=0.025 Score=57.00 Aligned_cols=210 Identities=14% Similarity=0.113 Sum_probs=121.1
Q ss_pred hhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc-CChhHHHH----------HHHHHHhCCChHHHHHH
Q 006955 99 IDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA-RDVASWTI----------MVNGLVREGRIVEARKL 167 (624)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~----------l~~~~~~~g~~~~a~~~ 167 (624)
+++|.+..+.- |.+..|..+.......-+++.|+..|-+... +.+...-. -...-+--|.+++|+++
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 44454444432 7777788777777766677777766655542 11110000 01112234667777777
Q ss_pred hccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCC-----cccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHH
Q 006955 168 FDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRD-----LTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWN 242 (624)
Q Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 242 (624)
+-.+..+|. .|..+.+.|++-...++++.--..+ ..+++.+...+.....|++|.+.+..-.. -.
T Consensus 757 yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e 826 (1189)
T KOG2041|consen 757 YLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TE 826 (1189)
T ss_pred hhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hH
Confidence 766666554 3455666677777777766543211 12566666677777777777776665432 12
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHH
Q 006955 243 SIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKF 322 (624)
Q Consensus 243 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (624)
..+.++.+..++++-+.+-..+ +.+....-.+..++.+.|.-++|.+.|-+...|. +.+..|...++|.+|.++
T Consensus 827 ~~~ecly~le~f~~LE~la~~L-pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTL-PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhc-CcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHH
Confidence 2344555555554444333322 5566666777788888888888887776655442 334556667777777776
Q ss_pred HHHh
Q 006955 323 FVQM 326 (624)
Q Consensus 323 ~~~m 326 (624)
-+..
T Consensus 901 aq~~ 904 (1189)
T KOG2041|consen 901 AQRF 904 (1189)
T ss_pred HHhc
Confidence 6554
No 154
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.89 E-value=1.4e-05 Score=47.81 Aligned_cols=34 Identities=38% Similarity=0.572 Sum_probs=29.7
Q ss_pred eehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC
Q 006955 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD 334 (624)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 334 (624)
.+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688899999999999999999999998888887
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=0.00018 Score=70.06 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=74.3
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhc
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIH 520 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 520 (624)
...+...|+++.|++.++++.+. .| +...|..+..+|.+.|++++|+..++++++ +.| ++..|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 34456667888888888887763 45 566777777778888888888888888776 344 466777777777788
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 521 NNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
|++++|+..+++++++.|.++.....+..+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888888888888888888777665555443
No 156
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.88 E-value=0.027 Score=53.88 Aligned_cols=134 Identities=16% Similarity=0.149 Sum_probs=98.7
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchH-HHH
Q 006955 401 IISWNSIICGLAYHGYAEKALELFERMRLTD-FKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHY-TCV 478 (624)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 478 (624)
..+|...+..-.+..-.+.|..+|-++.+.| +.++...+++++..++ .|+...|..+|+--...+ ||...| +..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 4567777887778888888899999988888 5677778888777554 467788888888766643 555444 356
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+..+.+.++-+.|..+|+..+.. +..+ ...|..++.--..-|+...+..+-+++.+..|.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 66677888888888888865532 2233 457888887778888888888888888888774
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.87 E-value=0.00048 Score=57.63 Aligned_cols=126 Identities=15% Similarity=0.139 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC--cchHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDD----ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR--SAHYT 476 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 476 (624)
.|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+.... ..|+ .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHH
Confidence 355555555 478888888888888875 3333 233345567888899999999999988752 1222 23444
Q ss_pred HHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVM 534 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 534 (624)
.|..++...|++++|+..++..... ...+..+.....++...|++++|...|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5788888999999999999775542 3345577778888999999999999998763
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.84 E-value=5.1e-05 Score=53.28 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=43.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+...+...|++++|...++++++..|.++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677788888888888888888877888888888888888888888888777654
No 159
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=1.9e-05 Score=46.87 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=25.1
Q ss_pred eehhhhhhHhhcCCCchHHHHHHHHhHHcCCCC
Q 006955 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSP 333 (624)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 333 (624)
.+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.83 E-value=0.0002 Score=69.87 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=84.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhc
Q 006955 407 IICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGR 484 (624)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 484 (624)
-...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|+..++++.+ +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 345677889999999999999984 554 45777788899999999999999999987 456 67788899999999
Q ss_pred cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHH
Q 006955 485 FGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC 517 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (624)
.|++++|+..|++.++ +.|+.......+..|
T Consensus 83 lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999987 567655544444333
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=5.6e-05 Score=67.84 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=79.1
Q ss_pred HhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHH
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRED 559 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 559 (624)
-..+.+++++|+..|.++++ +.| |++.|..=..+|.+.|.++.|++-.+.++.++|.-..+|..|+.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 35678999999999999998 566 677788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006955 560 AKRIFAQMKE 569 (624)
Q Consensus 560 A~~~~~~m~~ 569 (624)
|.+.|++.++
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999887664
No 162
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.80 E-value=0.004 Score=51.81 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=106.2
Q ss_pred CCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc---CHH
Q 006955 432 FKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV---SPT 508 (624)
Q Consensus 432 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~ 508 (624)
..|+...-..+..+....|+..+|...|++...- -+.-|....-.+.++....+++..|...++++-+. .| ++.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPD 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCC
Confidence 5677777777888899999999999999988762 23337778888888888999999999999887653 23 233
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
....+.+++...|....|+..|+.+....| ++.........+.++|+.+++..-+....+
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 455677888999999999999999999998 788888888889999998888776655543
No 163
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0014 Score=61.55 Aligned_cols=157 Identities=11% Similarity=0.008 Sum_probs=113.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHH-----------
Q 006955 409 CGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYT----------- 476 (624)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----------- 476 (624)
.++...|++++|...--...+. .++. .....-..++...++.+.+...|++..+ +.|+...-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 3466788888888887776653 2222 2222222355667889999999988775 446432211
Q ss_pred --HHHHHhhccCChHHHHHHHHHcccC---CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 477 --CVVDLLGRFGLIDEAMNLLNEIRAD---GIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 477 --~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
.=.+-..+.|.+..|.+.+.+.+.. +..|+...|.....+..+.|+.++|+.-.+++.+++|.-...|..-+.++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 1123345789999999999998762 22334445655666677899999999999999999998888899999999
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 006955 552 LSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~~ 570 (624)
...++|++|.+-+++..+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987665
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.77 E-value=0.00029 Score=61.00 Aligned_cols=99 Identities=12% Similarity=-0.011 Sum_probs=75.8
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
...+..+...+...|++++|...+++..+.+..+. ...+..+..++...|++++|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 44567777888888999999999988876432221 3577788888889999999999999999999988888888888
Q ss_pred HHHhcCC--------------hHHHHHHHHHHHHC
Q 006955 550 MYLSCGR--------------REDAKRIFAQMKEN 570 (624)
Q Consensus 550 ~~~~~g~--------------~~~A~~~~~~m~~~ 570 (624)
+|...|+ +++|.+++++....
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 8888776 45566666555443
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.001 Score=67.79 Aligned_cols=140 Identities=17% Similarity=0.069 Sum_probs=75.6
Q ss_pred CCCchhHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhccc--------ChHHHHHHHHHHhh
Q 006955 398 IHDIISWNSIICGLAY--HG---YAEKALELFERMRLTDFKPDDI-TFVGVLSACSYA--------GLVDQGRYYFDCMK 463 (624)
Q Consensus 398 ~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~--------g~~~~a~~~~~~~~ 463 (624)
+.+...|...+.+... .+ +...|..+|++..+ ..|+.. .+..+..++... +++..+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4466667776666432 22 25677778888777 466652 333322222111 12233333333322
Q ss_pred hhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 464 NKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 464 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
.......++..|..+.-.+...|++++|...++++.+ +.|+...|..+...+...|+.++|...++++..++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 2111112345555555555556667777777766666 345666666666666666777777777777766666555
No 166
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.019 Score=54.53 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=85.5
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+.+..+.-|...|+...|.++.++ +.+ |+...|...+.+|+..++|++-.++... +-+|.-|..++.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 4566667777788888877776554 434 8899999999999999999988876543 2345889999999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
|...|+..+|..+..++ .+..-+..|.+.|++.+|.+.--
T Consensus 247 ~~~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999998882 22567788999999999987643
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.0003 Score=60.72 Aligned_cols=96 Identities=14% Similarity=-0.066 Sum_probs=78.0
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV--SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
...|..++..+...|++++|+..+++.....-.| .+.++..+..++...|++++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5566777888888999999999999987642222 23578888889999999999999999999999988888888888
Q ss_pred HHH-------hcCChHHHHHHHHHH
Q 006955 550 MYL-------SCGRREDAKRIFAQM 567 (624)
Q Consensus 550 ~~~-------~~g~~~~A~~~~~~m 567 (624)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666654
No 168
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.72 E-value=0.05 Score=52.22 Aligned_cols=59 Identities=12% Similarity=0.038 Sum_probs=35.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHH
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTC 477 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 477 (624)
+..+|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..++++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~------LP~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK------LPPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh------CCCchhhHHH
Confidence 4456666666544444444 666666776666666666667777666653 4455555543
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.70 E-value=0.00011 Score=51.57 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=51.1
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
+...+...|++++|.+.|+++++.. +-++..+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788999999999999988853 23577888888899999999999999999999999764
No 170
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.70 E-value=0.00083 Score=53.13 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=74.5
Q ss_pred HHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---CCchHHHHHHHH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEPN---NSGVYLILTEMY 551 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~ 551 (624)
.+..++-..|+.++|+.+|++..+.|+... ...+-.+..++...|++++|..++++.....|. +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 356677788999999999999988876654 346666778888999999999999999988786 556666777788
Q ss_pred HhcCChHHHHHHHHHHHH
Q 006955 552 LSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~ 569 (624)
...|+.++|.+.+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999998766544
No 171
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.082 Score=54.09 Aligned_cols=319 Identities=15% Similarity=0.112 Sum_probs=186.2
Q ss_pred HHHHHHHHcCCCHHHHHHHhhhCCCCC---cchHHHHHHHHHhcC---ChHHHHHHHhhcCC--CCcchhhHHHHHHHhc
Q 006955 211 KQLINGLVNSRRIDAAISYFKQMPETC---EKTWNSIISVLIRNG---LVKEAHSYLEKYPY--SNIASWTNVIVGYFEM 282 (624)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~ 282 (624)
..+++-+...+.+..|+++-..+..|. ...|.....-+.+.. +-+.+..+-+++.. ..-.+|..+..-...+
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 445666777788888888888777665 345555555555542 23344444444443 3344577777777788
Q ss_pred CChHHHHHHHhhcCCC--------CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHH
Q 006955 283 GEVGSAIKVFELMTTR--------DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLG 354 (624)
Q Consensus 283 g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 354 (624)
|+.+.|..+++.=+.. +..-+...+.-+...|+.+-...++-.|... .+...|...++ +...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l~------~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTLR------NQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHHH------hchhh
Confidence 8888888887643321 2233455566667777777777777666542 22222222221 23334
Q ss_pred HHHHHHHHH-hCCCCCcchhHHHHHHhHhhCCHHHHHHH-hccC-----CCCCchhHHHHHHHHHHcCC----------h
Q 006955 355 RQIHAQAIK-IARNQFTTVSNAMITMYARCGNIQSALLE-FSSV-----PIHDIISWNSIICGLAYHGY----------A 417 (624)
Q Consensus 355 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~-----~~~~~~~~~~l~~~~~~~~~----------~ 417 (624)
..++.+..+ .+. ..+-+.|-...+...+-.+ ++.. ..+-..........+++... .
T Consensus 592 ~~lY~~~~r~~~~-------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 592 LSLYRQFMRHQDR-------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hHHHHHHHHhhch-------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 444443332 111 1122222222222221111 1110 01111122233334443332 1
Q ss_pred HHHHHHHHHHHH-CCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHH
Q 006955 418 EKALELFERMRL-TDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 418 ~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
.+-+.+.+.+.. .|..-...+.+-.+.-+...|+..+|.++-.+.+ + ||-..|..-+.+++..++|++-.++-+
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----i-pdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----I-PDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----C-cchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 112222333332 2334455566666777788899999988876544 3 899999999999999999999888877
Q ss_pred HcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 006955 497 EIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 497 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
... +|.-|.-++.+|.+.|+.++|.+++-+...+. ....+|.+.|++.+|.+.-
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 665 25667888999999999999999987653322 6788899999999998754
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.63 E-value=0.00039 Score=53.15 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=52.3
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH 520 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 520 (624)
+...+...|++++|...++.+.+. .| +...+..+...+...|++++|.+.+++..... +.+..++..+...+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 333444455555555555555442 22 23445555556666666666666666655432 22334556666666666
Q ss_pred CChHHHHHHHHHHHccCC
Q 006955 521 NNIKVGEIAGERVMELEP 538 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p 538 (624)
|+++.|...+.++.+..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777666666555
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.61 E-value=0.0014 Score=61.50 Aligned_cols=135 Identities=15% Similarity=0.185 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-hcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSA-CSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 480 (624)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 368888888888889999999999998542 2234445444443 34457788899999999986 4457888999999
Q ss_pred HhhccCChHHHHHHHHHcccCCCCcCH---HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEVSP---TVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
.+...|+.+.|..+|++.... +.++. ..|...+.--...|+.+....+.+++.+..|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998875 34433 588999988889999999999999999988853
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.59 E-value=0.00024 Score=51.20 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=49.3
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 515 GACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 515 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
..|...++++.|...++++++.+|.++..+...+.++...|++++|.+.+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788889999999999999999888889999999999999999999988887664
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.58 E-value=8.3e-05 Score=52.79 Aligned_cols=53 Identities=17% Similarity=0.343 Sum_probs=39.5
Q ss_pred HhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 518 RIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 518 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
...|++++|...++++.+..|.++.+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677788888888888888877777778888888888888888877766554
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.58 E-value=0.0001 Score=42.53 Aligned_cols=31 Identities=39% Similarity=0.664 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDF 432 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 432 (624)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888888764
No 177
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.58 E-value=0.071 Score=50.16 Aligned_cols=247 Identities=15% Similarity=0.121 Sum_probs=163.3
Q ss_pred hhcCCCchHHHHHHHHhHHcCCCCCHH--HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHH
Q 006955 310 LGENDLGEEGLKFFVQMKESGPSPDNA--TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387 (624)
Q Consensus 310 ~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (624)
-.-.|+++.|.+-|+.|... |... .+..|.-...+.|+.+.|.++-...-..- +.-.....+.+...+..|+|+
T Consensus 130 al~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 34467888888888887652 3222 23344444556777777777776655432 223445567788888888888
Q ss_pred HHHHHhccCC-----CCCch--hHHHHHHHH---HHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHH
Q 006955 388 SALLEFSSVP-----IHDII--SWNSIICGL---AYHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGR 456 (624)
Q Consensus 388 ~A~~~~~~~~-----~~~~~--~~~~l~~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~ 456 (624)
.|+++.+.-. .++.. .-..|+.+- .-..+...|...-.+..+ +.|+.. .-.....++.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 8888887543 33332 111222221 123356667766666655 677764 3334456889999999999
Q ss_pred HHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHH-HHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 457 YYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAM-NLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVM 534 (624)
Q Consensus 457 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 534 (624)
.+++.+-+ ..|.+.++... .+.+.|+..... +-.+.+.+ ++|+ ......+..+....|++..|..-.+.+.
T Consensus 284 ~ilE~aWK---~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 284 KILETAWK---AEPHPDIALLY--VRARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hHHHHHHh---cCCChHHHHHH--HHhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 99999887 35777765433 345666543321 11222222 4454 5566677788889999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhc-CChHHHHHHHHHHHHC
Q 006955 535 ELEPNNSGVYLILTEMYLSC-GRREDAKRIFAQMKEN 570 (624)
Q Consensus 535 ~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 570 (624)
...| ....|..|+++-... |+-.++...+.+..+.
T Consensus 357 r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 357 REAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999 778899999987765 9999999999887765
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.54 E-value=0.0019 Score=65.85 Aligned_cols=137 Identities=13% Similarity=0.083 Sum_probs=101.3
Q ss_pred CCCCChhhHHHHHHHhcc-----cChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhcc--------CChHHHHHHHH
Q 006955 431 DFKPDDITFVGVLSACSY-----AGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRF--------GLIDEAMNLLN 496 (624)
Q Consensus 431 g~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 496 (624)
+.+.|...|..++.+... .++.+.|..+|+++.+ ..|+ ...|..+..+|... +++..+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345666788888876432 2447799999999998 5684 55555555444322 22345555555
Q ss_pred HcccCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 497 EIRADG-IEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 497 ~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+..... ...++..+..+.-.....|++++|...++++++++| +...|..+++++...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 544421 344567788787777788999999999999999999 68899999999999999999999999887665
No 179
>PRK15331 chaperone protein SicA; Provisional
Probab=97.54 E-value=0.00088 Score=55.20 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=78.1
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 557 (624)
...-+...|++++|..+|+-+.-.+ .-++..|..|..+|...+++++|...|..+..+.++||..+...+.+|...|+.
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3344457899999999999876532 336677888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006955 558 EDAKRIFAQMKE 569 (624)
Q Consensus 558 ~~A~~~~~~m~~ 569 (624)
+.|...|.....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999987766
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.045 Score=52.08 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=48.0
Q ss_pred HHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHh
Q 006955 183 IAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLE 262 (624)
Q Consensus 183 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 262 (624)
+.-+...|+...|.++-.++.=++..-|..-+.+++..++|++-.++... +..+..|..++.+|.+.|+..+|..+..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHH
Confidence 34444455555555555555444444555555555555555554444332 2334455555555555555555555444
Q ss_pred hcCCCCcchhhHHHHHHHhcCChHHHHH
Q 006955 263 KYPYSNIASWTNVIVGYFEMGEVGSAIK 290 (624)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 290 (624)
.+ .+..-+..|.++|++.+|.+
T Consensus 262 k~------~~~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 262 KI------PDEERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred hC------ChHHHHHHHHHCCCHHHHHH
Confidence 31 11333444455555444433
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.54 E-value=0.0018 Score=56.09 Aligned_cols=126 Identities=15% Similarity=0.148 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPD--DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVV 479 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 479 (624)
.+..+...+...|++++|...+++..+.+..++ ...+..+...+...|++++|...+++..+. .| +...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 344444455555555555555555544221111 123444444445555555555555554442 23 333344444
Q ss_pred HHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 480 DLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
.+|...|+...+..-++... ..+++|.+.++++.+.+|.+ |..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 44444444333332222211 12567788888888888854 444444444333
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.48 E-value=0.032 Score=51.07 Aligned_cols=170 Identities=12% Similarity=0.069 Sum_probs=94.7
Q ss_pred HHHhHhhCCHHHHHHHhccCC--CCC-chh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcc
Q 006955 377 ITMYARCGNIQSALLEFSSVP--IHD-IIS---WNSIICGLAYHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACSY 448 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~--~~~-~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 448 (624)
...+...|++++|.+.|+++. .|+ ... .-.++.++.+.+++++|...+++..+. -|+. .-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 334455667777777776665 221 111 123455667777777777777777763 3332 222222222211
Q ss_pred --c---------------Ch---HHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH
Q 006955 449 --A---------------GL---VDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT 508 (624)
Q Consensus 449 --~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (624)
. .+ ...|...|+.+.+.+ |+. .-..+|.+.+..+.. ..-.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~---~la~- 176 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKD---RLAK- 176 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHH---HHHH-
Confidence 0 01 223444444444432 332 223333333333221 0000
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---CchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNN---SGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
.--.+..-|.+.|.+..|..-++.+++..|.. +.....+..+|...|..++|.++...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 01133445788999999999999999977754 4557788899999999999999876553
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.45 E-value=0.11 Score=49.14 Aligned_cols=108 Identities=13% Similarity=0.048 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----h-hHHHHHHHhcccChHHHHHHHHHHhhhhc-CCCCC--cc
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-----I-TFVGVLSACSYAGLVDQGRYYFDCMKNKY-FLQPR--SA 473 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 473 (624)
++..+...+.+.|++++|.++|++....-...+. . .+...+-++...|+...|...+++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3455667788888888888888887764322221 1 22233335556677888888777766431 12111 23
Q ss_pred hHHHHHHHhhc--cCChHHHHHHHHHcccCCCCcCHHHHHHHH
Q 006955 474 HYTCVVDLLGR--FGLIDEAMNLLNEIRADGIEVSPTVWGALL 514 (624)
Q Consensus 474 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (624)
....|+.++-. ...++.|+.-|+.+. +.|+..-..|+
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w~~~~l~ 275 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHHHHHHHH
Confidence 34455555543 235666666666665 44544434333
No 184
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.42 E-value=0.00014 Score=41.98 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=21.5
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHHcCC
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGP 331 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 331 (624)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.42 E-value=0.00028 Score=50.21 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=54.0
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCC
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHN-NIKVGEIAGERVMELEP 538 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 538 (624)
++..|..+...+...|++++|+..|++.++ +.| ++..|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345677788888889999999999998887 445 4668888888888888 68999999999988887
No 186
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.42 E-value=0.00032 Score=52.21 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH-HHHHHHHHHHHhcCChHHHHH
Q 006955 450 GLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP-TVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~ 528 (624)
|+++.|+.+++++.+.....|+...+-.+..+|.+.|++++|..++++ .+ ..|+. .....+..++...|++++|+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 455555555555554321111222333355555555555555555555 21 22322 233333445555566666555
Q ss_pred HHHH
Q 006955 529 AGER 532 (624)
Q Consensus 529 ~~~~ 532 (624)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.41 E-value=0.00021 Score=50.67 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=22.7
Q ss_pred cChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
.|++++|.++|+.+... .| +...+..++.+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555554442 23 344444445555555555555555555444
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.11 Score=52.73 Aligned_cols=242 Identities=11% Similarity=0.087 Sum_probs=156.1
Q ss_pred hhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCC-CCcccHHH--------H--HHHHHcCCChHHHHHH
Q 006955 68 VQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPL-KDVVSWNL--------V--IGALVNCQRMDLAESY 136 (624)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~--------l--~~~~~~~~~~~~a~~~ 136 (624)
+++|....+. .|.+..|..|.......-.++-|...|-+... +.+...-. + ...-+-.|.+++|+++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 4444444443 45666777777766666667777776665543 22211111 1 1112235899999999
Q ss_pred HHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCC-----ChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHH
Q 006955 137 FKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAK-----DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWK 211 (624)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 211 (624)
|-.+..+|. .+..+.+.||+-...++++.=-.. -..+++.+...+.....|++|.+.|...... .
T Consensus 757 yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e 826 (1189)
T KOG2041|consen 757 YLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----E 826 (1189)
T ss_pred hhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----H
Confidence 988876653 356677888888888887653321 2468899999999999999999999876532 3
Q ss_pred HHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHH
Q 006955 212 QLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKV 291 (624)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 291 (624)
..+.++.+..++++-..+...+.+ +......+.+.+.+.|.-++|.+.+-+...| .+.+..+...+++.+|.++
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-----kaAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSLP-----KAAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHHH
Confidence 467778887778777777666644 4556677788889999999988877654433 2345667777888888888
Q ss_pred HhhcCCCCceehhh--------------hhhHhhcCCCchHHHHHHHHhH
Q 006955 292 FELMTTRDVTVWNV--------------MIFGLGENDLGEEGLKFFVQMK 327 (624)
Q Consensus 292 ~~~~~~~~~~~~~~--------------l~~~~~~~~~~~~a~~~~~~m~ 327 (624)
-+...-|.+.+.-+ -|..+.+.|.+-.|-+++.+|.
T Consensus 901 aq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 901 AQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 77665554333211 1233445555555666665554
No 189
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.37 E-value=0.0019 Score=53.06 Aligned_cols=96 Identities=9% Similarity=-0.097 Sum_probs=73.2
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+-.+...+...|++++|.++|+-+.. +.| +...|-.|.-++-..|++++|+..|....... +-|+..+-.+..+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 444455566778888888888888776 556 56667778888888888888888888877743 3457777788888
Q ss_pred HHhcCChHHHHHHHHHHHccC
Q 006955 517 CRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~ 537 (624)
+...|+.+.|++.|+.++...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 888888888888888888755
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.35 E-value=0.065 Score=50.39 Aligned_cols=275 Identities=11% Similarity=0.040 Sum_probs=166.9
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHhhCC---CCCcchHHHHHHHHH--cCCChhhHHHHHhcCC-CCCchh--HHHHHHH
Q 006955 23 TWNVMIRGYF--KNGFLDNAMCLFNQMP---ERDMFTYNTVIAGLM--QSDNVQGAKEVFDGME-VRDVVT--WNSMISG 92 (624)
Q Consensus 23 ~~~~l~~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~-~~~~~~--~~~l~~~ 92 (624)
.|..|-.++. -.|+-..|.++-.+.. ..|....-.|+.+-. -.|++++|.+-|+.|. .|.... .-.|.-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 4666666654 3567777777665544 344444444544433 4688888888888887 222221 2223333
Q ss_pred HHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHhccc-----CChh--HHHHHHHHH---HhCC
Q 006955 93 YVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGALVNCQRMDLAESYFKEMGA-----RDVA--SWTIMVNGL---VREG 159 (624)
Q Consensus 93 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~---~~~g 159 (624)
.-+.|..+.|...-+..-. | -+..+...+...+..||++.|+++++.-.. ++.. .-..|+.+- .-.-
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 3466777777777766653 3 335677788888888888888888876553 2321 112222211 1123
Q ss_pred ChHHHHHHhccCC--CCChh-HHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHH----HHHhhh
Q 006955 160 RIVEARKLFDKMP--AKDVQ-AWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAA----ISYFKQ 232 (624)
Q Consensus 160 ~~~~a~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A----~~~~~~ 232 (624)
|...|...-.+.. .||.. .-..-...+.+.|++.++-.+++.+-+..++.--.++..+.+.|+.... .+-+..
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 3444444433333 34433 2333456778888888888888888877777666666667777764322 234556
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC--CCCcchhhHHHHHHHh-cCChHHHHHHHhhcCC
Q 006955 233 MPETCEKTWNSIISVLIRNGLVKEAHSYLEKYP--YSNIASWTNVIVGYFE-MGEVGSAIKVFELMTT 297 (624)
Q Consensus 233 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 297 (624)
|+..+..+...+..+....|++..|..--+... .|....|-.|.+.-.. .|+-.++...+.+...
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 666677777777788888888877766555554 5555666666666544 4888888888776653
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.35 E-value=0.02 Score=54.08 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=84.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhccc-ChHHHHHHHHHHhhhhcCCC--C--CcchHHHHHH
Q 006955 406 SIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYA-GLVDQGRYYFDCMKNKYFLQ--P--RSAHYTCVVD 480 (624)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~~ 480 (624)
..+..|...|++..|-..+.+ +...|... |+++.|.+.+++...-+... + -..++..++.
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 344455555555555444444 44556676 88888888888877642111 1 1345667788
Q ss_pred HhhccCChHHHHHHHHHcccCCCC-----cCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc-----hHHHHHH
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIE-----VSPT-VWGALLGACRIHNNIKVGEIAGERVMELEPNNSG-----VYLILTE 549 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~-----p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~ 549 (624)
.+.+.|++++|.++|++....... .+.. .+-..+-++...||...|.+.+++.....|.-.. ....|+.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 889999999999999886543221 1221 2233334567789999999999999988874332 2445555
Q ss_pred HHHhc--CChHHHHHHHH
Q 006955 550 MYLSC--GRREDAKRIFA 565 (624)
Q Consensus 550 ~~~~~--g~~~~A~~~~~ 565 (624)
++-.. ..+++++.-|+
T Consensus 244 A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHTT-CCCHHHHCHHHT
T ss_pred HHHhCCHHHHHHHHHHHc
Confidence 55432 33444444444
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.31 E-value=0.0061 Score=50.76 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=91.8
Q ss_pred CCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CCchH
Q 006955 467 FLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN--NSGVY 544 (624)
Q Consensus 467 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 544 (624)
...|++..--.|...+.+.|+..+|...|++...--+.-|+.....+.++....+++..|...++++.+.+|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3568777777899999999999999999999887656678999999999999999999999999999998875 57778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 545 LILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..+++.|...|++.+|...|+...+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 89999999999999999988877654
No 193
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.27 E-value=0.0023 Score=60.11 Aligned_cols=131 Identities=12% Similarity=0.114 Sum_probs=102.0
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc-cCChHHHHHHHHHcccCCCCcCHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR-FGLIDEAMNLLNEIRADGIEVSPTVWGALLG 515 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (624)
.+|..++...-+.+..+.|+.+|+++.+.. ..+..+|......-.+ .++.+.|.++|+...+. +..+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 467778888888889999999999998642 2245556655555444 56777799999998764 5667889999999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 516 ACRIHNNIKVGEIAGERVMELEPNNS---GVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
-+...|+.+.|..+|++++..-|.+. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999776544 47888898889999999999999998764
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.26 E-value=0.0027 Score=58.51 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=65.2
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---CchHHH
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTVWGALLGACRIHNNIKVGEIAGERVMELEPNN---SGVYLI 546 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 546 (624)
.|...+..+.+.|++++|+..|+.+++ ..|+ +..+-.+..+|...|+++.|...|+++.+..|.+ +..+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 344444444556778888888877776 3343 2466667777778888888888888888766654 344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
++.++...|++++|..++++..+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677777888888888888777654
No 195
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.26 E-value=0.00019 Score=42.17 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=30.8
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhcCChHHHHH
Q 006955 530 GERVMELEPNNSGVYLILTEMYLSCGRREDAKR 562 (624)
Q Consensus 530 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 562 (624)
++++++++|+++..|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 196
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.25 E-value=0.071 Score=51.21 Aligned_cols=163 Identities=15% Similarity=0.079 Sum_probs=104.6
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCCCC-------CchhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006955 374 NAMITMYARCGNIQSALLEFSSVPIH-------DIISWNSIICGLAY---HGYAEKALELFERMRLTDFKPDDITFVGVL 443 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 443 (624)
..++-.|-...+++..+++.+.+... .+..-....-++-+ .|+.++|++++..+....-.+++.++..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34566788888899998888888732 12222234445556 789999999999966665677778887776
Q ss_pred HHhcc---------cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCC----hHHHHHHH----HHcccCC---C
Q 006955 444 SACSY---------AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGL----IDEAMNLL----NEIRADG---I 503 (624)
Q Consensus 444 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~----~~~~~~g---~ 503 (624)
..|-. ....+.|...+.+.-+ +.|+...--.++-.+...|. -.+..++- ....+.| -
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 65422 2347788888877554 44544332223333333332 12222322 1111222 2
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 504 EVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
..+-..+.+++.++.-.||.++|.+.++++....|+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 346667789999999999999999999999998874
No 197
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.25 E-value=0.0036 Score=53.99 Aligned_cols=115 Identities=12% Similarity=0.041 Sum_probs=60.9
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLG 515 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 515 (624)
.+..+...+...|++++|...+++......-.+ ...++..+..+|...|++++|++.+++.... .| ....+..+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 344444555556666666666666654211001 1235666666777777777777777776652 33 2344455554
Q ss_pred HHH-------hcCChH-------HHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006955 516 ACR-------IHNNIK-------VGEIAGERVMELEPNNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 516 ~~~-------~~g~~~-------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 557 (624)
.+. ..|+++ +|...++++.+..|.+ +......+...|++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN---YIEAQNWLKITGRF 167 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHhcCC
Confidence 544 666666 4445555555566632 33333334444443
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.20 E-value=0.0026 Score=59.66 Aligned_cols=133 Identities=10% Similarity=0.010 Sum_probs=92.1
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhh---hhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcc----cCCC-CcCH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMK---NKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIR----ADGI-EVSP 507 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~g~-~p~~ 507 (624)
..|..|...|.-.|+++.|+...+.-. +.+|-.. .-..+..+.++++-.|+++.|.+.|+... +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 355566666677788999887765422 2233222 34567788888888999999999887743 2222 2245
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcc----C--CCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMEL----E--PNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
....+|..+|....++++|+.+..+=+.+ + ......+..|+.+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56677888888888899998887765542 2 12456788999999999999999887766543
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.17 E-value=0.004 Score=60.87 Aligned_cols=120 Identities=8% Similarity=-0.022 Sum_probs=89.4
Q ss_pred CCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC-CC-----CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh
Q 006955 365 ARNQFTTVSNAMITMYARCGNIQSALLEFSSVP-IH-----DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDIT 438 (624)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 438 (624)
+.+.+......+++......+++.+..++-+.. .| -+.|..+++..|...|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 444555556667777777778888888877665 21 234567889999999999999999998888999999999
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhcc
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRF 485 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 485 (624)
++.++..+.+.|++..|.++...|.... .-.++.++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888887653 334556655444444444
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.15 E-value=0.014 Score=46.31 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=66.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHH
Q 006955 406 SIICGLAYHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVV 479 (624)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 479 (624)
.+..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....+ |+ ......+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHH
Confidence 3456777889999999999999888766653 355667778888899999999999888753 43 22222344
Q ss_pred HHhhccCChHHHHHHHHHcc
Q 006955 480 DLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~ 499 (624)
-++...|+.++|++++-...
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 56677889999988887655
No 201
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.14 E-value=0.0094 Score=58.37 Aligned_cols=124 Identities=12% Similarity=0.014 Sum_probs=96.0
Q ss_pred CCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcC-CCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHH
Q 006955 431 DFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF-LQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTV 509 (624)
Q Consensus 431 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 509 (624)
+.+.+...+..++..+....+++.+..++-+...... ...-+.+..++++.|...|..+.++++++.=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3456677888888888888899999988888776421 112345556899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcc-CCCCCchHHHHHHHHHhc
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVMEL-EPNNSGVYLILTEMYLSC 554 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~ 554 (624)
++.|+..+.+.|++..|.++...+... ...++.++..-..++.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988777653 344566655555555444
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.13 E-value=0.0015 Score=47.08 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=50.1
Q ss_pred HHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchH
Q 006955 480 DLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
..|.+.+++++|.++++++...+ +.++..|.....++...|++++|...++++++..|.++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 46778888999999998888742 33566777788888888999999999999998888655443
No 203
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.07 E-value=0.0043 Score=47.17 Aligned_cols=79 Identities=13% Similarity=0.013 Sum_probs=63.9
Q ss_pred hhhhhHhhcCCCchHHHHHHHHhHHcCC-CCCHHHHHHHHHHHcCCC--------CcHHHHHHHHHHHHhCCCCCcchhH
Q 006955 304 NVMIFGLGENDLGEEGLKFFVQMKESGP-SPDNATFTSVLTICSDLP--------TLDLGRQIHAQAIKIARNQFTTVSN 374 (624)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (624)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++++...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 999999999999886643 2345667788888889999998888
Q ss_pred HHHHHhHh
Q 006955 375 AMITMYAR 382 (624)
Q Consensus 375 ~l~~~~~~ 382 (624)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88876654
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.95 E-value=0.029 Score=48.60 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHc-----CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHH
Q 006955 332 SPDNATFTSVLTICS-----DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNS 406 (624)
Q Consensus 332 ~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 406 (624)
..+..+|..++..+. +.|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- +.+ .+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------p~n--~fQ~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------PRN--FFQA 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------ccc--HHHH
Confidence 556677777777664 457778888888888899999999999988887754 2211 000 1111
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChH-HHHHHHHHHhhh
Q 006955 407 IICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLV-DQGRYYFDCMKN 464 (624)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 464 (624)
+..- ...+-+-|++++++|...|+-||..++..++..+.+.+.. ....+..-.|.+
T Consensus 111 ~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 111 EFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred Hhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1111 1234567999999999999999999999999999887753 334444444433
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.93 E-value=0.0014 Score=41.44 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
.++..+..+|...|++++|++.++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788888999999999999999999999999888877764
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.93 E-value=0.0041 Score=60.25 Aligned_cols=63 Identities=8% Similarity=-0.028 Sum_probs=33.4
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP----TVWGALLGACRIHNNIKVGEIAGERVMEL 536 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 536 (624)
...++.+..+|.+.|++++|+..|++.++ +.|+. ..|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555555555555555555555544 34442 23555555555555555555555555554
No 207
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.92 E-value=0.74 Score=48.76 Aligned_cols=105 Identities=12% Similarity=0.146 Sum_probs=45.1
Q ss_pred HHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHc--CCCHHHHHHHhhhCCC-CCcc-hHHHHHHHHHhcCChHHHHHH
Q 006955 185 GYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVN--SRRIDAAISYFKQMPE-TCEK-TWNSIISVLIRNGLVKEAHSY 260 (624)
Q Consensus 185 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~-~~~~-~~~~ll~~~~~~~~~~~a~~~ 260 (624)
-..+.|++..+.++...+.+.-...|-.-...... ...+++...++++-.. |-.. .-...+..+.+.+++.....+
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~ 121 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF 121 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh
Confidence 34566777777777766643333222222221112 2235555555555432 2221 112223344445555555542
Q ss_pred HhhcCCCCcchhhHHHHHHHhcCChHHHHH
Q 006955 261 LEKYPYSNIASWTNVIVGYFEMGEVGSAIK 290 (624)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 290 (624)
+.. .+.+.........+....|+.++|..
T Consensus 122 ~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~ 150 (644)
T PRK11619 122 SPE-KPKPVEARCNYYYAKWATGQQQEAWQ 150 (644)
T ss_pred cCC-CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 211 13333333444444555555444433
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.92 E-value=0.073 Score=53.36 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=39.6
Q ss_pred HcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC--CCch-----------hHHHHHHHH
Q 006955 345 CSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI--HDII-----------SWNSIICGL 411 (624)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-----------~~~~l~~~~ 411 (624)
+.+...+..|.++|..+-.. ..+++.+...++|++|..+-++.++ +++. -|.-.-.+|
T Consensus 757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH
Confidence 33444455555555544332 2356666666777777666666652 2221 011122345
Q ss_pred HHcCChHHHHHHHHHHHH
Q 006955 412 AYHGYAEKALELFERMRL 429 (624)
Q Consensus 412 ~~~~~~~~a~~~~~~m~~ 429 (624)
-+.|+-.+|.++++++..
T Consensus 828 hkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHhcchHHHHHHHHHhhh
Confidence 566666666666666544
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.06 Score=47.76 Aligned_cols=137 Identities=13% Similarity=0.060 Sum_probs=94.1
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHH-----H
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNA-----M 376 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 376 (624)
+.+.++..+...+.+.-.+..+++.++...+-+......+.+...+.||.+.+..+|+.+.+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566677777888888888888888866566667777788888888999999988887776544444433333 3
Q ss_pred HHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 006955 377 ITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV 440 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 440 (624)
...|.-+.++..|...+.+++ +.++..-|.-.-+....|+..+|++.++.|.+ ..|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 345666677778877777776 33455555555555567788888888888877 355544433
No 210
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.84 E-value=0.0065 Score=46.23 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=62.6
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCC-CCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCCh
Q 006955 339 TSVLTICSDLPTLDLGRQIHAQAIKIAR-NQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYA 417 (624)
Q Consensus 339 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 417 (624)
...+..|...+++.....+++.+.+.|+ -|+..+|+.++...++..-- ...-.++.
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD-----------------------~~~ie~kl 85 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELD-----------------------SEDIENKL 85 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcccc-----------------------chhHHHHH
Confidence 3445566666888888888888888888 77777777776655543100 01112345
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 418 EKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 418 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
-..+.+|+.|...+++|+..||+.++..+.+
T Consensus 86 ~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 86 TNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 6778899999999999999999999987654
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.032 Score=49.40 Aligned_cols=129 Identities=10% Similarity=0.003 Sum_probs=59.1
Q ss_pred HHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHH-----HHH
Q 006955 441 GVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGA-----LLG 515 (624)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-----l~~ 515 (624)
.++.++.-.|.+.-....+.++.+.. -+.++.....|++.-.+.||.+.|...|++..+..-..|..+.+. ...
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 33334444444444444444444421 111344444444444555555555555554333221222222222 122
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 516 ACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.+.-++++..|...+.++...+|.++...+.-+-+..-.|+..+|++.++.|+..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2344455555555555555555555555555555555555555555555555444
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.76 E-value=0.013 Score=53.97 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=69.6
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTV 509 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~ 509 (624)
.|...+......|++++|...|+...+.+ |+ +..+-.+...|...|++++|...|+.+.+. .|+ +..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dA 219 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHH
Confidence 34444443455678888888888877754 53 246667888888888888888888887753 232 445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
+..+..++...|+.+.|...++++++..|.+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 55556667788899999999999988888543
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.74 E-value=0.038 Score=46.22 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.+...++..+...|+++.|...+++++..+|-+...+..++.+|...|+..+|.++|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35566777888999999999999999999999999999999999999999999999998753
No 214
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.052 Score=49.62 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=79.4
Q ss_pred CCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccC---ChHHHHHHHHHcccCCCCc-CH
Q 006955 433 KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFG---LIDEAMNLLNEIRADGIEV-SP 507 (624)
Q Consensus 433 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~~ 507 (624)
+-|...|..|...|...|+.+.|..-|.+..+. .| ++..+..+..++.... +..++..+|+++.. ..| +.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~i 227 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANI 227 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccH
Confidence 335578888888888888888888888888873 34 6777777777665432 56778889999887 455 45
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
....-|...+...|++.+|...|+.+++..|.+.
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 5666677778899999999999999999887554
No 215
>PRK11906 transcriptional regulator; Provisional
Probab=96.71 E-value=0.027 Score=54.87 Aligned_cols=142 Identities=11% Similarity=0.152 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHH-CCCCCCh-hhHHHHHHHhcc---------cChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhc
Q 006955 417 AEKALELFERMRL-TDFKPDD-ITFVGVLSACSY---------AGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGR 484 (624)
Q Consensus 417 ~~~a~~~~~~m~~-~g~~p~~-~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 484 (624)
.+.|+.+|.+... ..+.|+. ..|..+..++.. ..+..+|.++.++..+ +.| |+.....+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4556667777662 2245554 344444433221 1234455555555554 334 56666666666666
Q ss_pred cCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch--HHHHHHHHHhcCChHHHH
Q 006955 485 FGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV--YLILTEMYLSCGRREDAK 561 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~ 561 (624)
.|+++.|..+|++... +.|+ ..+|......+.-.|+.++|.+.++++++++|..... .-..+..|+.++ .++|+
T Consensus 351 ~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 351 SGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred hcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 6667777777777665 4454 4455555555566677777777777777777654333 222233444443 44444
Q ss_pred HHH
Q 006955 562 RIF 564 (624)
Q Consensus 562 ~~~ 564 (624)
.++
T Consensus 428 ~~~ 430 (458)
T PRK11906 428 KLY 430 (458)
T ss_pred HHH
Confidence 444
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.70 E-value=0.0028 Score=46.29 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcc----CCC---CCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMEL----EPN---NSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
.+++.+..+|...|++++|+..+++++++ .+. -..++..++.+|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666677777777766666652 111 13456777777777777777777776654
No 217
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.69 E-value=0.84 Score=46.02 Aligned_cols=384 Identities=11% Similarity=0.067 Sum_probs=180.9
Q ss_pred CcchHHHHHHHHHcCCChhhHHHHHhcCC--CCCch-hHHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHH
Q 006955 51 DMFTYNTVIAGLMQSDNVQGAKEVFDGME--VRDVV-TWNSMISGYVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGAL 124 (624)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 124 (624)
+...+..++.---+..+++.+..++..+. -|... -|......-.+.|..+.+.++|++..+ | ++..|......+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFL 123 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44556655555444445566666666665 23332 234444555667788888888888776 3 344455444444
Q ss_pred H-cCCChHHHHHHHHhccc------CChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHH---c-----
Q 006955 125 V-NCQRMDLAESYFKEMGA------RDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLD---N----- 189 (624)
Q Consensus 125 ~-~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~----- 189 (624)
. ..|+.+.....|+.+.. .+...|-..+..-..++++.....+++.+.+-...-++..-.-|.+ .
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~ 203 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKI 203 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhh
Confidence 4 45777777777777764 2455666667666777778888888777775433333333322221 1
Q ss_pred -CChhHHHHHHHHcccCCcccHHHHHHHHHcCCCH-HHHHHHhhhCCCCCcc---hHHHHHH-------HHHhcCChHHH
Q 006955 190 -GCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRI-DAAISYFKQMPETCEK---TWNSIIS-------VLIRNGLVKEA 257 (624)
Q Consensus 190 -g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~---~~~~ll~-------~~~~~~~~~~a 257 (624)
-..+++.++-........ -...+.. +......+....|... ..+.+.. .+...-.....
T Consensus 204 l~~~d~~~~l~~~~~~~~~---------~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 204 LLSIDELIQLRSDVAERSK---------ITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK 274 (577)
T ss_pred hcCHHHHHHHhhhHHhhhh---------cccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 112222222221111000 0000111 1111111111111111 0111111 11111111122
Q ss_pred HHHHhhcC-----------CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCC---ceehhhhhhHhhcCCCchHHHHHH
Q 006955 258 HSYLEKYP-----------YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRD---VTVWNVMIFGLGENDLGEEGLKFF 323 (624)
Q Consensus 258 ~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 323 (624)
...++... ..+..+|...++.-.+.|+.+.+.-+|++..-+- ...|--.+.-....|+.+-|-.++
T Consensus 275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 22222222 2334456667777777777777777777765441 123333333333346666666666
Q ss_pred HHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHH---HHhccCC--C
Q 006955 324 VQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSAL---LEFSSVP--I 398 (624)
Q Consensus 324 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~--~ 398 (624)
..-.+--++-.+.+-..-...+...|+.+.|..+++.+...- +.-..+-..-+....+.|+.+.+. .++.... .
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 554443333333222222223445567777777777776654 222222223344555666666665 3333222 1
Q ss_pred CCchhHHHHHHH-----HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006955 399 HDIISWNSIICG-----LAYHGYAEKALELFERMRLTDFKPDDITFVGVLSA 445 (624)
Q Consensus 399 ~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 445 (624)
.+....+.+.-- +.-.++.+.|..++.++.+. ++++...|..++..
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRF 484 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHH
Confidence 122222222211 22345666677777666663 34444455555543
No 218
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.019 Score=54.51 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
++..|..+|.+.+++..|++...+.++.+|+|...++.-+.+|...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 45555566666777777777777777777777777777777777777777777777766554
No 219
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.13 Score=48.97 Aligned_cols=81 Identities=14% Similarity=0.003 Sum_probs=37.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCC---CCcchHHHHHHHHHhcCCh
Q 006955 181 LMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPE---TCEKTWNSIISVLIRNGLV 254 (624)
Q Consensus 181 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~ 254 (624)
.....+.+..++.+|+..+....+- +..-|..-+..+...|++++|+--.+.-.+ ..+......-+++...++.
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHH
Confidence 3445556666677777777666552 222244444444445555554433332222 1222333344444444444
Q ss_pred HHHHHHH
Q 006955 255 KEAHSYL 261 (624)
Q Consensus 255 ~~a~~~~ 261 (624)
.+|.+.+
T Consensus 134 i~A~~~~ 140 (486)
T KOG0550|consen 134 IEAEEKL 140 (486)
T ss_pred HHHHHHh
Confidence 4444443
No 220
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.63 E-value=0.089 Score=52.78 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=10.6
Q ss_pred hhcCCCchHHHHHHHHhHH
Q 006955 310 LGENDLGEEGLKFFVQMKE 328 (624)
Q Consensus 310 ~~~~~~~~~a~~~~~~m~~ 328 (624)
|.+.|+..+|..+++++-.
T Consensus 827 fhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHhcchHHHHHHHHHhhh
Confidence 3445556666666665543
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.025 Score=53.65 Aligned_cols=98 Identities=14% Similarity=0.070 Sum_probs=82.9
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
..++..+.-+|.+.+++.+|++..++.+..+ +++...+-.=..+|...|+++.|+..|+++++++|.|-.+-..|+.+-
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4456778889999999999999999988854 567777777788999999999999999999999999988888888887
Q ss_pred HhcCChHHH-HHHHHHHHHC
Q 006955 552 LSCGRREDA-KRIFAQMKEN 570 (624)
Q Consensus 552 ~~~g~~~~A-~~~~~~m~~~ 570 (624)
.+..++++. .++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 777666554 7789888654
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.56 E-value=0.086 Score=46.95 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=37.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCc---hHHHHHHHHHhcCChHHHHH
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNNSG---VYLILTEMYLSCGRREDAKR 562 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 562 (624)
+..-|.+.|.+..|..-++.+++..|..+. ....++.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 345578899999999999999998886543 46788888999998885543
No 223
>PRK09687 putative lyase; Provisional
Probab=96.35 E-value=0.93 Score=42.54 Aligned_cols=173 Identities=12% Similarity=-0.050 Sum_probs=69.0
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCh----hhHHHHHhcC--CCCCchhHHHHHHH
Q 006955 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNV----QGAKEVFDGM--EVRDVVTWNSMISG 92 (624)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~--~~~~~~~~~~l~~~ 92 (624)
+|..+....+.++...|..+-...+..-+..+|+..-...+.+++..|+. .++...+..+ ..++..+-...+.+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~a 114 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINA 114 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44444444455554444322222222222244444444455555555542 2344444433 23444444444444
Q ss_pred HHhCCCh-----hHHHHHhccCC-CCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCC-hHHHH
Q 006955 93 YVCNGLI-----DEALRVFHGMP-LKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGR-IVEAR 165 (624)
Q Consensus 93 ~~~~g~~-----~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~ 165 (624)
++..+.. ..+...+.... .++..+-...+.++++.++.+....+..-+..+|...-...+.++.+.+. ...+.
T Consensus 115 LG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~ 194 (280)
T PRK09687 115 TGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIR 194 (280)
T ss_pred HhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHH
Confidence 4433211 12222222221 23444444445555555543322222333333444444444444443321 12232
Q ss_pred HHhccC-CCCChhHHHHHHHHHHHcCC
Q 006955 166 KLFDKM-PAKDVQAWNLMIAGYLDNGC 191 (624)
Q Consensus 166 ~~~~~~-~~~~~~~~~~l~~~~~~~g~ 191 (624)
..+..+ ..+|..+-...+.++++.|+
T Consensus 195 ~~L~~~L~D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 195 EAFVAMLQDKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHccCC
Confidence 222222 23444455555555555554
No 224
>PRK11906 transcriptional regulator; Provisional
Probab=96.32 E-value=0.16 Score=49.69 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 486 GLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 486 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
....+|.+..++..+.+ +-|+.....+..+....|+++.|...|+++..++|+.+.++...++.....|+.++|.+.++
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556666777766643 44666666666666666677777777777777777777777777777777777777777777
Q ss_pred HHHH
Q 006955 566 QMKE 569 (624)
Q Consensus 566 ~m~~ 569 (624)
+..+
T Consensus 397 ~alr 400 (458)
T PRK11906 397 KSLQ 400 (458)
T ss_pred HHhc
Confidence 6444
No 225
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.30 E-value=0.015 Score=54.84 Aligned_cols=265 Identities=12% Similarity=0.047 Sum_probs=141.6
Q ss_pred HHHhCCChHHHHHHhccCCCCCh-------hHHHHHHHHHHHcCChhHHHHHHHHc------c-c--CCcccHHHHHHHH
Q 006955 154 GLVREGRIVEARKLFDKMPAKDV-------QAWNLMIAGYLDNGCVGVAEDLFQKM------H-D--RDLTSWKQLINGL 217 (624)
Q Consensus 154 ~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~------~-~--~~~~~~~~l~~~~ 217 (624)
-+++.|+....+.+|+...+-.. ..|..|..+|.-.+++++|++.-..= . + ....+...|...+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 46778888888888777664322 24555666666666777776653211 0 0 0112333445555
Q ss_pred HcCCCHHHHHHHhhhCCC---------CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHH
Q 006955 218 VNSRRIDAAISYFKQMPE---------TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSA 288 (624)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 288 (624)
--.|.+++|+....+-.. .....+..+...|...|..-.... +.+...++.=+. ..++.|
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~------pee~g~f~~ev~-----~al~~A 174 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA------PEEKGAFNAEVT-----SALENA 174 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC------hhhcccccHHHH-----HHHHHH
Confidence 556666666554433222 112233334444433332100000 000011110000 012233
Q ss_pred HHHHhhcC-------CC--CceehhhhhhHhhcCCCchHHHHHHHHhH----HcCCC-CCHHHHHHHHHHHcCCCCcHHH
Q 006955 289 IKVFELMT-------TR--DVTVWNVMIFGLGENDLGEEGLKFFVQMK----ESGPS-PDNATFTSVLTICSDLPTLDLG 354 (624)
Q Consensus 289 ~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~ll~~~~~~~~~~~a 354 (624)
.++|.+-. .+ -...|..|...|.-.|+++.|+..-+.-. +-|-+ .....+..+.+++.-.|+++.|
T Consensus 175 v~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 175 VKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred HHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhH
Confidence 33333211 11 23466777777777888888877655422 12211 2234566777777888888888
Q ss_pred HHHHHHHHH----hCC-CCCcchhHHHHHHhHhhCCHHHHHHHhccCC---------CCCchhHHHHHHHHHHcCChHHH
Q 006955 355 RQIHAQAIK----IAR-NQFTTVSNAMITMYARCGNIQSALLEFSSVP---------IHDIISWNSIICGLAYHGYAEKA 420 (624)
Q Consensus 355 ~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a 420 (624)
.+.++.... .|- ......+-+|.+.|.-..++++|+..+.+-. .-...+|.++..+|...|..++|
T Consensus 255 ~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 255 IEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 887775433 222 1233445567788888888888888776543 11345677888888888888888
Q ss_pred HHHHHHHHH
Q 006955 421 LELFERMRL 429 (624)
Q Consensus 421 ~~~~~~m~~ 429 (624)
+...+.-.+
T Consensus 335 l~fae~hl~ 343 (639)
T KOG1130|consen 335 LYFAELHLR 343 (639)
T ss_pred HHHHHHHHH
Confidence 877766544
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.21 E-value=1.3 Score=42.92 Aligned_cols=130 Identities=12% Similarity=0.019 Sum_probs=98.1
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH-HHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP-TVWGALLG 515 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~ 515 (624)
..|...+..-.+..-++.|+.+|-++.+..-+.+++.++++++..++ .|+..-|-++|+--.. .-||. ....-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 45666777777778899999999999987436678999999998776 6788899999987443 23444 44456666
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCC--CchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 516 ACRIHNNIKVGEIAGERVMELEPNN--SGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
-+..-+|-+.|..+|+..++.-..+ ..+|..++.--..-|+...+..+-++|..
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6778899999999999777633222 55788888888888999888777766654
No 227
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.19 E-value=0.35 Score=44.34 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=33.7
Q ss_pred HHHHHhhccCChHHHHHHHHHcccC--CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRAD--GIEVSPTVWGALLGACRIHNNIKVGEIAGERV 533 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 533 (624)
.+.+.|.+.|.+..|+.-++.+++. +.+..+..+..++.+|...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4556666777777777666666543 11122345555666777777777776655443
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.13 Score=45.21 Aligned_cols=145 Identities=14% Similarity=0.030 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcC----CCCCcchHHHHH
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF----LQPRSAHYTCVV 479 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~ 479 (624)
|+.....|..+|.++.|-..+++.-+. ...-+++.|++++++...-.. ..--...+..+.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 444556677777777666666654431 122233444444444332100 001133345556
Q ss_pred HHhhccCChHHHHHHHHHcccCC----CCcCH-HHHHHHHHHHHhcCChHHHHHHHHHHHc----cCCCCCchHHHHHHH
Q 006955 480 DLLGRFGLIDEAMNLLNEIRADG----IEVSP-TVWGALLGACRIHNNIKVGEIAGERVME----LEPNNSGVYLILTEM 550 (624)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g----~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~ 550 (624)
+.|.+...+++|-..+.+-.... -.|+. ..+...|-.+.-..|+..|++.++...+ ..|.+..+...|+.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 66777777777665554422110 12222 2345555566677788888888888665 346677778888877
Q ss_pred HHhcCChHHHHHHHH
Q 006955 551 YLSCGRREDAKRIFA 565 (624)
Q Consensus 551 ~~~~g~~~~A~~~~~ 565 (624)
| ..|+.+++.+++.
T Consensus 238 y-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKVLS 251 (308)
T ss_pred h-ccCCHHHHHHHHc
Confidence 6 4567777766553
No 229
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.08 E-value=0.068 Score=46.39 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=77.3
Q ss_pred HHhccC--CCCCchhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhh
Q 006955 391 LEFSSV--PIHDIISWNSIICGLAY-----HGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMK 463 (624)
Q Consensus 391 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 463 (624)
..|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+ |.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~------------ 101 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GK------------ 101 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CC------------
Confidence 344444 24566677777777764 46777788889999999999999999999987654 22
Q ss_pred hhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC
Q 006955 464 NKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNN 522 (624)
Q Consensus 464 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 522 (624)
..|.. .+..+-..| -.+.+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 102 ----fvp~n-~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 102 ----FVPRN-FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----ccccc-HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11211 111111111 23456789999999999999999999999998866553
No 230
>PRK09687 putative lyase; Provisional
Probab=96.03 E-value=1.4 Score=41.45 Aligned_cols=50 Identities=12% Similarity=-0.058 Sum_probs=20.1
Q ss_pred CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCC
Q 006955 80 VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQR 129 (624)
Q Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (624)
.+|..+....+..+...|..+....+..-+..+|+..-...+.+++..|+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 44444444444444444432222222222222444444444444444443
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=96.00 E-value=0.026 Score=46.76 Aligned_cols=90 Identities=9% Similarity=-0.129 Sum_probs=64.6
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH 520 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 520 (624)
....+...|++++|..+|+-+.. ..| ++..+..|..++-..+++++|+..|......+ .-|+...-....++...
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHh
Confidence 33445677888888888887776 345 66667778888888888888888887755432 23444455566777888
Q ss_pred CChHHHHHHHHHHHc
Q 006955 521 NNIKVGEIAGERVME 535 (624)
Q Consensus 521 g~~~~a~~~~~~~~~ 535 (624)
|+.+.|+..|+.+++
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888888888877
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.97 E-value=0.3 Score=49.69 Aligned_cols=163 Identities=14% Similarity=0.165 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCh-----hhHHHHHHHhc----ccChHHHHHHHHHHhhhhcCCCCCcc
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTD-FKPDD-----ITFVGVLSACS----YAGLVDQGRYYFDCMKNKYFLQPRSA 473 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~ 473 (624)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|..++..+. ...+.+.|.++++.+.+.+ |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 4455566666777777777777765532 22111 12333333222 2467888999999999864 7766
Q ss_pred hHH-HHHHHhhccCChHHHHHHHHHcccCC--C-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH-
Q 006955 474 HYT-CVVDLLGRFGLIDEAMNLLNEIRADG--I-EVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT- 548 (624)
Q Consensus 474 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g--~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~- 548 (624)
.|. .-.+.+...|+.++|++.+++..... . +.....+--+...+...+++++|...+.++.+.+......|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 655 34556677899999999999866421 1 112345556667788899999999999999998776555554444
Q ss_pred HHHHhcCCh-------HHHHHHHHHHHH
Q 006955 549 EMYLSCGRR-------EDAKRIFAQMKE 569 (624)
Q Consensus 549 ~~~~~~g~~-------~~A~~~~~~m~~ 569 (624)
-++...|+. ++|.+++.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 456677888 888888887653
No 233
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.96 E-value=1.2 Score=40.14 Aligned_cols=162 Identities=19% Similarity=0.155 Sum_probs=92.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC-CC-ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc---
Q 006955 410 GLAYHGYAEKALELFERMRLTDF-KP-DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR--- 484 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 484 (624)
.-.+.|++++|...|+.+..... .| ...+...++.++.+.++.+.|+..+++-.+.++-.||.. |...+.++..
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcc
Confidence 34556667777777766665321 11 123455555566666777777776666666554444332 2222222221
Q ss_pred ----cCChHHH---H----HHHHHcccCCCCcCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 485 ----FGLIDEA---M----NLLNEIRADGIEVSPTVWG------------ALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 485 ----~g~~~~A---~----~~~~~~~~~g~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
..|...+ . +++++...+...||...-- .+..-|.+.|.+..|..-++.+++.-|..+
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~ 201 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS 201 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc
Confidence 1222222 2 2222333333344433221 223457899999999999999999777655
Q ss_pred ch---HHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 006955 542 GV---YLILTEMYLSCGRREDAKRIFAQMKENGVK 573 (624)
Q Consensus 542 ~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 573 (624)
.+ +..+..+|...|..++|.+.-+ ....+.+
T Consensus 202 ~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N~p 235 (254)
T COG4105 202 AVREALARLEEAYYALGLTDEAKKTAK-VLGANYP 235 (254)
T ss_pred chHHHHHHHHHHHHHhCChHHHHHHHH-HHHhcCC
Confidence 44 6677778999999999998855 4444433
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.92 E-value=0.044 Score=53.35 Aligned_cols=61 Identities=15% Similarity=-0.001 Sum_probs=31.9
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcc----hHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSA----HYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
..++.+..+|...|++++|...+++..+ +.|+.. .|..+..+|...|+.++|++.++++++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555555555555554 334321 245555555555555555555555554
No 235
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.90 E-value=0.15 Score=45.33 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=68.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHh
Q 006955 407 IICGLAYHGYAEKALELFERMRLTDFKPDD----ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLL 482 (624)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 482 (624)
....+...|++.+|...|+++... -|+. .....++.++.+.|+++.|...+++..+.+.-.|.. .+...+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~ 87 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGL 87 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHH
Confidence 344555666677777777766653 2221 234445556666666666666666666643211111 111111111
Q ss_pred hccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc-----------------hHH
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG-----------------VYL 545 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~ 545 (624)
+......... ......+...+|...++.+++..|+++- .-.
T Consensus 88 ~~~~~~~~~~----------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 88 SYYKQIPGIL----------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHHHHHHHHH-----------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCccch----------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 1111000000 0011223344556666666666664432 223
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 546 ILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.+++.|.+.|.+..|..-++.+.+.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5678899999999999999998776
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.85 E-value=0.18 Score=40.82 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=58.0
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch-HHHHHHH--HH
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEV---SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV-YLILTEM--YL 552 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~--~~ 552 (624)
.....+.|++++|++.|+.+... .+- ....-..|+.+|.+.|+++.|...+++.++++|.++.+ |.....+ +.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 33445677888888888777654 121 34456667778888888888888888888888877655 3333333 33
Q ss_pred hcCC---------------hHHHHHHHHHHHHC
Q 006955 553 SCGR---------------REDAKRIFAQMKEN 570 (624)
Q Consensus 553 ~~g~---------------~~~A~~~~~~m~~~ 570 (624)
.+.. ..+|..-|+++.+.
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 3333 55666666666544
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.83 E-value=1.4 Score=40.02 Aligned_cols=196 Identities=19% Similarity=0.136 Sum_probs=122.0
Q ss_pred chhHHHHHHhHhhCCHHHHHHHhccCC-----CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-
Q 006955 371 TVSNAMITMYARCGNIQSALLEFSSVP-----IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLS- 444 (624)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~- 444 (624)
.........+...+++..+...+.... ......+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 344445555566666666655555432 2233445555566666677777777777776643222 122222222
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCC----CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHh
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQP----RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRI 519 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 519 (624)
.+...|+++.+...+++... ..| ....+......+...++.+.+...+.+..... .. ....+..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHH
Confidence 56777888888888887744 222 22333334444566778888888888877632 22 35667777777777
Q ss_pred cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 520 HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.++++.|...+..+....|.....+..+...+...|..+++...+.+.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888887655666677777766677888887777765543
No 238
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.83 E-value=0.079 Score=42.47 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=27.6
Q ss_pred CCCCcchHHHHHHHhhccCChHHHHHHHHHcccC-CCCcCHHHHHHHHHHH
Q 006955 468 LQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-GIEVSPTVWGALLGAC 517 (624)
Q Consensus 468 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~ 517 (624)
+.|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|+.-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4555666666666666666666666665554332 3444555666555443
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.79 E-value=0.1 Score=40.93 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=48.4
Q ss_pred HhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC----chHHHHHHHHHhcCC
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS----GVYLILTEMYLSCGR 556 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 556 (624)
++...|+.+.|++.|.+.+.. .+..+..|+.-.+++.-+|+.++|..-+++++++..... ..|..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344556666666666655542 122455666666666666666666666666665442221 124455555556666
Q ss_pred hHHHHHHHHHHHHCC
Q 006955 557 REDAKRIFAQMKENG 571 (624)
Q Consensus 557 ~~~A~~~~~~m~~~~ 571 (624)
-+.|..=|+..-..|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666665555444
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.79 E-value=0.019 Score=48.07 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=25.7
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHc
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEI 498 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (624)
+..+...|++++|..+.+.+... .| +...|..+|.+|...|+..+|.++|+++
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~---dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALAL---DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH---STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33344455555555555555542 23 4555555555555555555555555543
No 241
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.76 E-value=0.01 Score=43.28 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=45.5
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccC----CC-CcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GI-EVS-PTVWGALLGACRIHNNIKVGEIAGERVMEL 536 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 536 (624)
..+++.+...|...|++++|++.+++..+. |- .|+ ..++..+..++...|++++|+++++++.++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345677788888888888888888776532 11 122 446677778888888888888888887764
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.3 Score=45.14 Aligned_cols=152 Identities=13% Similarity=0.020 Sum_probs=91.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHH----HHHHhhccCCh
Q 006955 413 YHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTC----VVDLLGRFGLI 488 (624)
Q Consensus 413 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~ 488 (624)
..|+..+|-..++++.+. .+.|...+.-.=.+|.-.|+.+.-...++++.-. ..|+...|.. +..++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346666666667776664 4445555555556677777777766666666643 3455544443 33444567777
Q ss_pred HHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----CCchHHHHHHHHHhcCChHHHHHHH
Q 006955 489 DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN----NSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 489 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
++|.+..++..+.+ +-|...-.++.......|+++++.++..+-...-.. -...|-+.+-.+...+.++.|.++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777776632 335555566666666777777777766554432210 1223555666666677777777777
Q ss_pred HHHH
Q 006955 565 AQMK 568 (624)
Q Consensus 565 ~~m~ 568 (624)
++=.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.56 E-value=0.21 Score=40.45 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=50.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCC
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDD---ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGL 487 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 487 (624)
..+.|++++|.+.|+.+... .+.+. ..-..++.++.+.|++++|...+++.++.+.-.|+ ..|...+.+++....
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHHH
Confidence 34555566666666555543 11111 23344555555555555555555555553322222 123333333322222
Q ss_pred hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 488 IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
.+ ..+..+. +..-| .+....|...|+++++..|++.
T Consensus 98 ~~---~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DE---GSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hh---hHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 11 1111111 11111 2235678888888888888543
No 244
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.55 E-value=0.92 Score=35.92 Aligned_cols=140 Identities=12% Similarity=0.118 Sum_probs=76.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHH
Q 006955 412 AYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEA 491 (624)
Q Consensus 412 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 491 (624)
.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+-+.+. .+|+....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3456666677776666542 233334433333333333444445555444432222 23344444
Q ss_pred HHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 492 MNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 492 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+..+-.+- .+.......+.+...+|.-++-.+++..+.+.+..+|..+..++.+|.+.|+..++.+++.+..+.|
T Consensus 76 i~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 76 IECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 44433322 2233445556667788888888888888886555589999999999999999999999999999999
Q ss_pred Cc
Q 006955 572 VK 573 (624)
Q Consensus 572 ~~ 573 (624)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 74
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.54 E-value=0.096 Score=41.98 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=51.5
Q ss_pred hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHH
Q 006955 436 DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLG 515 (624)
Q Consensus 436 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (624)
..++..++.++++.|+++....+++.. .|+.++...- .+. --......|+..++.+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence 445666666666666666666665432 2343322110 000 1223335677777777777
Q ss_pred HHHhcCChHHHHHHHHHHHccCC--CCCchHHHHHHH
Q 006955 516 ACRIHNNIKVGEIAGERVMELEP--NNSGVYLILTEM 550 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~ 550 (624)
++...|++..|.++.+...+..| -+..++..|.+-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777777777777777666443 233445555543
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.47 E-value=0.48 Score=48.28 Aligned_cols=119 Identities=17% Similarity=0.061 Sum_probs=85.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHhcccChHHHHHHHHHHhhhh-cCCCC-CcchHHHHHHHhhccCChHH
Q 006955 414 HGYAEKALELFERMRLTDFKPDDITFVGVL-SACSYAGLVDQGRYYFDCMKNK-YFLQP-RSAHYTCVVDLLGRFGLIDE 490 (624)
Q Consensus 414 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~ 490 (624)
..+.+.|.++++.+.+ --|+...|...- +.+...|++++|++.+++.... ...+. ....+--++..+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4567889999999988 478877665544 3566779999999999975531 11111 34455667888899999999
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHH-HhcCCh-------HHHHHHHHHHHc
Q 006955 491 AMNLLNEIRADGIEVSPTVWGALLGAC-RIHNNI-------KVGEIAGERVME 535 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~-------~~a~~~~~~~~~ 535 (624)
|.+.+.++.+.. .-+..+|.-+..+| ...|+. ++|..+++++-.
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999998754 34555665555554 567777 777777777665
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.65 Score=42.56 Aligned_cols=123 Identities=13% Similarity=0.083 Sum_probs=83.6
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNI 523 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 523 (624)
.....|+..+|...|+..... .| +...--.++++|...|+.+.|..++..+...--.........-+..+....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456778888888888888774 34 56677788899999999999999999887532122222211222222222222
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 524 KVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.+.. -+++-...+|.|...-..|+..|...|+.++|.+.+-.+.++.
T Consensus 220 ~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2222 2334445788899999999999999999999999877776653
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.41 E-value=1 Score=44.52 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=11.8
Q ss_pred HHHHHHHHHHccCCCCC
Q 006955 525 VGEIAGERVMELEPNNS 541 (624)
Q Consensus 525 ~a~~~~~~~~~~~p~~~ 541 (624)
.|.+.+.++.+.+|.-|
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 46677888888777544
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.29 E-value=0.14 Score=46.29 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=63.0
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccCCCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---CchHHHH
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV---SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN---SGVYLIL 547 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 547 (624)
.|+.-+.+ .+.|++..|...|...++.. +- .+..+-.|..++...|+++.|...|..+.+-.|.. |..+.-|
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 45554443 35666777777777766531 11 12344457777778888888888887777755544 4557777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC
Q 006955 548 TEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+.+..+.|+.++|..+|++..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77778888888888888777654
No 250
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.08 E-value=4.5 Score=41.10 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=119.2
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCCCC---CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVPIH---DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
..++...+..-.+.|+.+.+.-+|++...| -...|-..+.-....|+.+-|..++....+-.++-.+.+...-..-+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 345556666677788888888888877643 23345555555555688888888887776643332232222222335
Q ss_pred cccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhccCChHHHH---HHHHHcccCCCCcC--HHHHHHHHHH-HHh
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAM---NLLNEIRADGIEVS--PTVWGALLGA-CRI 519 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~g~~p~--~~~~~~l~~~-~~~ 519 (624)
...|+++.|..+++.+.+. . |+ +..-..-+....+.|..+.+. +++.........+. ...+....+- +..
T Consensus 377 e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 5678999999999999986 3 64 333334455566788888887 55554443222222 1122222222 456
Q ss_pred cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 520 HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
.++.+.|..++.++.+..|.+-..|..++.....++
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 789999999999999999988888999998877665
No 251
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.08 E-value=0.06 Score=31.40 Aligned_cols=32 Identities=31% Similarity=0.295 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
.|..+..++...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566666777777777777777777777743
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.00 E-value=1.7 Score=39.10 Aligned_cols=157 Identities=14% Similarity=0.103 Sum_probs=97.4
Q ss_pred hHhhCCHHHHHHHhccCCCC---C---chhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHhc---cc
Q 006955 380 YARCGNIQSALLEFSSVPIH---D---IISWNSIICGLAYHGYAEKALELFERMRLT-DFKPDDITFVGVLSACS---YA 449 (624)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~---~~ 449 (624)
-.+.|++++|.+.|+.+... + ..+--.++.++.+.++++.|+...++.... +-.||. -|...|.+++ ..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccC
Confidence 34567777777777776621 1 223444566677888888888888887763 223333 3333333222 21
Q ss_pred ----Ch---HHHHHHHHHHhhhhcCCCCCcch------------------HHHHHHHhhccCChHHHHHHHHHcccCCCC
Q 006955 450 ----GL---VDQGRYYFDCMKNKYFLQPRSAH------------------YTCVVDLLGRFGLIDEAMNLLNEIRADGIE 504 (624)
Q Consensus 450 ----g~---~~~a~~~~~~~~~~~~~~p~~~~------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 504 (624)
.+ ...|..-|+.+..++ ||+.- =..+.+.|.+.|.+..|..-+++|.+. .+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ry---PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~ 198 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRY---PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YP 198 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHC---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cc
Confidence 12 345556666666653 43211 123567789999999999999999876 33
Q ss_pred cCHH---HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 505 VSPT---VWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 505 p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
-++. .+-.+..+|...|-.++|...-.-+....|+++
T Consensus 199 ~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 199 DTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred cccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3333 444556788999999999888766665666443
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=6.2 Score=41.78 Aligned_cols=173 Identities=16% Similarity=0.117 Sum_probs=109.9
Q ss_pred chHHHHHHHHHcCCChhhHHHHHhcCCCCCchh----HHHHHHHHHhCCChhHHHHHhccCCC-CCcccHHHHHHHHHcC
Q 006955 53 FTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVT----WNSMISGYVCNGLIDEALRVFHGMPL-KDVVSWNLVIGALVNC 127 (624)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~ 127 (624)
.....-+..+.+..-++-|+.+-..-. .+..+ ......-+.+.|++++|...|-+... -++ ..++.-|...
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLda 410 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDA 410 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCH
Confidence 344556677777777888887765444 23333 33344445578999999988876654 121 2345555555
Q ss_pred CChHHHHHHHHhccc---CChhHHHHHHHHHHhCCChHHHHHHhccCCCCChh--HHHHHHHHHHHcCChhHHHHHHHHc
Q 006955 128 QRMDLAESYFKEMGA---RDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQ--AWNLMIAGYLDNGCVGVAEDLFQKM 202 (624)
Q Consensus 128 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 202 (624)
.....-..+++.+.+ .+...-+.|+.+|.+.++.++..+..+... .... -....+..+.+.+-.++|..+-.+.
T Consensus 411 q~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 566666666666665 356677888999999999999888887766 2222 2344566667777777777766655
Q ss_pred ccCCcccHHHHHHHHHcCCCHHHHHHHhhhCC
Q 006955 203 HDRDLTSWKQLINGLVNSRRIDAAISYFKQMP 234 (624)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 234 (624)
.. ...... -.+-..+++++|++.+..+.
T Consensus 490 ~~-he~vl~---ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 490 KK-HEWVLD---ILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred cc-CHHHHH---HHHHHhcCHHHHHHHHhcCC
Confidence 44 222222 22334677888888888775
No 254
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.89 E-value=0.052 Score=31.74 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666677777777777777777777777774
No 255
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.83 E-value=0.18 Score=42.91 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=26.5
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
..+.+.++.|+.-..++++++|....++..-+.+|.+..++++|++=|+++.+
T Consensus 144 ~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 144 LIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34445555555555555555554444444445555555555555555544443
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.77 E-value=3.1 Score=37.67 Aligned_cols=199 Identities=14% Similarity=0.089 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-CCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC--CCc-hhHHHHHH-
Q 006955 335 NATFTSVLTICSDLPTLDLGRQIHAQAIKI-ARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI--HDI-ISWNSIIC- 409 (624)
Q Consensus 335 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~- 409 (624)
...+......+...+....+...+...... ........+......+...++...+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344445555555556666665555554442 2233334444555666666777777777776652 222 22333333
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC----ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhc
Q 006955 410 GLAYHGYAEKALELFERMRLTDFKP----DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGR 484 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 484 (624)
.+...|+++.+...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHH
Confidence 68889999999999999855 344 2233333444466788999999999998874 223 36778888888999
Q ss_pred cCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 485 FGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
.++++.|...+..... ..|+ ...+..+...+...|..+.+...+.+..+..|.
T Consensus 215 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999886 3444 455556666666777899999999999999985
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.74 E-value=1.2 Score=43.10 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=39.8
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCC-------CceehhhhhhHhhc---CCCchHHHHHHHHhHHcCCCCCHHHHHHHHH
Q 006955 274 NVIVGYFEMGEVGSAIKVFELMTTR-------DVTVWNVMIFGLGE---NDLGEEGLKFFVQMKESGPSPDNATFTSVLT 343 (624)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 343 (624)
.++-+|....+++..+++++.+... ....-.....++.+ .|+.++|+.++..+....-.+++.||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566666666666666666543 11111223344455 6777777777777555555666666665555
Q ss_pred HH
Q 006955 344 IC 345 (624)
Q Consensus 344 ~~ 345 (624)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.32 Score=45.01 Aligned_cols=116 Identities=12% Similarity=0.038 Sum_probs=92.6
Q ss_pred ccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH----HHHHHHHHHHHhcCCh
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP----TVWGALLGACRIHNNI 523 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~ 523 (624)
..|+.-+|-..++++.+++ +.|...+..--.+|.-.|+.+.-...++++... ..||. .+...+.-++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4577778888889988864 347777877778888889888888888887653 23443 3333444455789999
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 006955 524 KVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
++|++..+++++++|.|....-.++.++...|++.++.++..+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 9999999999999999999999999999999999999998764
No 259
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.57 E-value=6.8 Score=44.02 Aligned_cols=251 Identities=11% Similarity=0.029 Sum_probs=141.1
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCCh-hHHHHHhccCCCCCcccHHH
Q 006955 41 MCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLI-DEALRVFHGMPLKDVVSWNL 119 (624)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~ 119 (624)
..+.+.+..+|+.+-...+..+.+.+..+....+...+..+|..+-...+.++.+.+.. .....+...+..+|+.....
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~ 703 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAA 703 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHH
Confidence 34445555777777777777777777654434444444455555555555544443221 11111222222366666666
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhH-HHHH
Q 006955 120 VIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGV-AEDL 198 (624)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~ 198 (624)
.+.++...+..+ ...+...+..+|+..-...+.++...+..+. +......++..+-...+.++...+..+. +...
T Consensus 704 A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~ 779 (897)
T PRK13800 704 ALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDA 779 (897)
T ss_pred HHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHH
Confidence 666665443221 2234455555677666667777766655433 2233445667776677777776665442 2333
Q ss_pred HHH-cccCCcccHHHHHHHHHcCCCHHHHHH-HhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHH
Q 006955 199 FQK-MHDRDLTSWKQLINGLVNSRRIDAAIS-YFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVI 276 (624)
Q Consensus 199 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 276 (624)
+.. +.++|...-...+..+...|....+.. +...+.+++...-...+.++...+..+....+...+..++..+-...+
T Consensus 780 L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 780 VRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHH
Confidence 333 345676677777777877777655433 334444566666677777777777654444444444477777777777
Q ss_pred HHHHhcCChHHHHHHHhhc
Q 006955 277 VGYFEMGEVGSAIKVFELM 295 (624)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~~ 295 (624)
.++.+.+....+...+...
T Consensus 860 ~aL~~~~~~~~a~~~L~~a 878 (897)
T PRK13800 860 LALTRWPGDPAARDALTTA 878 (897)
T ss_pred HHHhccCCCHHHHHHHHHH
Confidence 7777753333455555443
No 260
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=7 Score=40.86 Aligned_cols=116 Identities=7% Similarity=0.055 Sum_probs=68.4
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCC---cchHHHHHHHHHcCCC---hhhHHHHHhcCCC--CCchhHHHHHHHHHhCCC
Q 006955 27 MIRGYFKNGFLDNAMCLFNQMPERD---MFTYNTVIAGLMQSDN---VQGAKEVFDGMEV--RDVVTWNSMISGYVCNGL 98 (624)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 98 (624)
++.-+...+.+.-|+++-..+..|. ..+|..-..-+.+..+ -+-+..+-+++.. ..-..|..+.+.....|+
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGR 522 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCc
Confidence 4555666777888888777776554 4455555555554422 2223333333333 344567777777778888
Q ss_pred hhHHHHHhccCCC--------CCcccHHHHHHHHHcCCChHHHHHHHHhccc
Q 006955 99 IDEALRVFHGMPL--------KDVVSWNLVIGALVNCQRMDLAESYFKEMGA 142 (624)
Q Consensus 99 ~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (624)
.+-|..+++.=.+ -+..-+...+.-+...||.+-...++-++..
T Consensus 523 ~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 523 FELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 8888887754322 1223455556666677777777766666553
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.54 E-value=0.3 Score=38.38 Aligned_cols=91 Identities=23% Similarity=0.138 Sum_probs=66.6
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHH---HHHHHhc
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGAL---LGACRIH 520 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l---~~~~~~~ 520 (624)
+.+..|+++.|++.|.+... +-| +...||.-..++--.|+.++|++-+++..+..-.-......+. ...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 45678889999998888776 445 7888999889998899999999988887765322232222222 2346788
Q ss_pred CChHHHHHHHHHHHccCC
Q 006955 521 NNIKVGEIAGERVMELEP 538 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p 538 (624)
|+.+.|..-|+.+.++..
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 899999888888877654
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.91 Score=41.63 Aligned_cols=134 Identities=12% Similarity=0.154 Sum_probs=73.9
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHccc---CCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCc-
Q 006955 163 EARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHD---RDLTSWKQLINGLVNSRRIDAAISYFKQMPETCE- 238 (624)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 238 (624)
...++++.+..+....-..-.......|++.+|..+|..... .+...--.++.+|...|+.+.|..++..+.....
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~ 200 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD 200 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh
Confidence 344445555444332233334455667788888887777765 2344566677778888888888888887764211
Q ss_pred ---chHHHHHHHHHhcCChHHHHHHHhhcC--CCCcchhhHHHHHHHhcCChHHHHHHHhhcC
Q 006955 239 ---KTWNSIISVLIRNGLVKEAHSYLEKYP--YSNIASWTNVIVGYFEMGEVGSAIKVFELMT 296 (624)
Q Consensus 239 ---~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 296 (624)
.....-+..+.+.....+...+-.... +.|...-..+...+...|+.+.|.+.+-.+.
T Consensus 201 ~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 201 KAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111122333444333333333333333 3455555566666667777777666554443
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.42 E-value=1 Score=44.48 Aligned_cols=54 Identities=9% Similarity=-0.047 Sum_probs=29.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
+.---+..++..-.+.-++..+ +.|+..+...++ +-.....+.++.+++++..+
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvk 228 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVK 228 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHH
Confidence 3333455566666666666665 566654332222 22334456677777766554
No 264
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.40 E-value=0.41 Score=43.34 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=56.1
Q ss_pred cccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC-CCCc-CHHHHHHHHHHHHhcCCh
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-GIEV-SPTVWGALLGACRIHNNI 523 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p-~~~~~~~l~~~~~~~g~~ 523 (624)
...|++..|..-|..-.+.+.-.+ .+..+-.|..++...|++++|..+|..+.+. +-.| -+..+--|..+....|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 344556666666666665431111 2344555677777777777777777666543 1112 134555555566677777
Q ss_pred HHHHHHHHHHHccCCCCCc
Q 006955 524 KVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~~ 542 (624)
++|...++++.+..|..+.
T Consensus 232 d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 232 DEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHHHCCCCHH
Confidence 7777777777777775443
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.18 E-value=1.4 Score=36.67 Aligned_cols=88 Identities=20% Similarity=0.099 Sum_probs=50.0
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCCCc-chHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChH
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQPRS-AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIK 524 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 524 (624)
-.+.++.+.+..+++.+.- +.|.. ..-..-...+.+.|+|.+|+.+|+++.+. .|....-..|+..|.....-.
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCCh
Confidence 3455677777777777665 55642 22233455567788888888888887653 354444455555554332222
Q ss_pred HHHHHHHHHHccCC
Q 006955 525 VGEIAGERVMELEP 538 (624)
Q Consensus 525 ~a~~~~~~~~~~~p 538 (624)
.=..+..++++..|
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 22333444555444
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.10 E-value=0.84 Score=42.87 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=70.6
Q ss_pred HHHHHHhcccChHHHHHHHHHHhhhhcC--CCC--CcchHHHHHHHhhccCChHHHHHHHHHcccC----CCCcCHHHHH
Q 006955 440 VGVLSACSYAGLVDQGRYYFDCMKNKYF--LQP--RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEVSPTVWG 511 (624)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~ 511 (624)
.++..++...+.++++.+.|+...+-.. -.| ...++..|...|.+..|+++|.-...+..+. ++..=...|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3445566666677777777776554211 011 3456667777777777777766555443321 1111112222
Q ss_pred -----HHHHHHHhcCChHHHHHHHHHHHccC--CCC----CchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 512 -----ALLGACRIHNNIKVGEIAGERVMELE--PNN----SGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 512 -----~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
.+.-++...|..-.|.+..+++.++. ..| ......++++|...|+.+.|..-|++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22344566777777777777666522 112 233556677777777777766655543
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=9.8 Score=40.41 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=30.4
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVM 534 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 534 (624)
++..+.+..+.+.+..+.+...+ -+|..|..++..+.+.+..+.-.+...+.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 34455566666666666666553 266667777766666665544444444433
No 268
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.02 E-value=1.5 Score=44.14 Aligned_cols=158 Identities=17% Similarity=0.123 Sum_probs=86.7
Q ss_pred HhhcCCCchHHHHHHH--HhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCH
Q 006955 309 GLGENDLGEEGLKFFV--QMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNI 386 (624)
Q Consensus 309 ~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (624)
...-.++++++.+..+ ++.. .+ | ......++.-+.+.|..+.|.++-.+-. .-.+...+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 3455677777666654 1221 11 2 3335566666667777777776654321 234556677788
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhc
Q 006955 387 QSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKY 466 (624)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 466 (624)
+.|.++.++.. +...|..|.......|+++-|++.|++... |..++-.|...|+.+...++.+......
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88877776665 455788888888888888888877777543 4455555666677666666665554431
Q ss_pred CCCCCcchHHHHHHHhhccCChHHHHHHHHHcc
Q 006955 467 FLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 467 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (624)
-++....++.-.|+.++..+++.+.-
T Consensus 404 -------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 -------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp --------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 13334444455577777776666543
No 269
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.00 E-value=10 Score=40.49 Aligned_cols=384 Identities=7% Similarity=-0.030 Sum_probs=177.8
Q ss_pred ChHHHHHHHhhCCC-CC-cchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCC---
Q 006955 36 FLDNAMCLFNQMPE-RD-MFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMP--- 110 (624)
Q Consensus 36 ~~~~A~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--- 110 (624)
..++...++++... |- ...-..-+..+++.+++......+ .-.+.+...-.....+....|+.++|......+-
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~-~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS-PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 45555555555542 21 122233344555677777777733 2224455555667777777888766655555443
Q ss_pred CCCcccHHHHHHHHHcCCCh------------------HHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCC
Q 006955 111 LKDVVSWNLVIGALVNCQRM------------------DLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMP 172 (624)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~------------------~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 172 (624)
...+..++.++..+...|.+ ..|..+...+..........++..+. +...+...+....
T Consensus 160 ~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~ 236 (644)
T PRK11619 160 KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG 236 (644)
T ss_pred CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC
Confidence 13345566666666544433 33333222221111111122222222 2222222222221
Q ss_pred CCChhHHHHHHHHH--HHcCChhHHHHHHHHcccCCcc-------cHHHHHHHHHcCCCHHHHHHHhhhCCC--CCcchH
Q 006955 173 AKDVQAWNLMIAGY--LDNGCVGVAEDLFQKMHDRDLT-------SWKQLINGLVNSRRIDAAISYFKQMPE--TCEKTW 241 (624)
Q Consensus 173 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~ 241 (624)
++...-..++.++ ....+.+.|..++......... .+..+.......+...+|...+..... .+....
T Consensus 237 -~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~ 315 (644)
T PRK11619 237 -PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLL 315 (644)
T ss_pred -CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHH
Confidence 1111111111111 1234567788888776443221 234444333444335566666666543 244444
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchH
Q 006955 242 NSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEE 318 (624)
Q Consensus 242 ~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (624)
.--+......++++.+...+..+. .....-..=+..++...|+.++|...|+.+... ...|..|...- .|..-.
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~--Lg~~~~ 392 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQR--LGEEYP 392 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHH--cCCCCC
Confidence 555555557788887777777765 222222334566666678888888888887543 22333222111 111100
Q ss_pred -----HHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHh
Q 006955 319 -----GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEF 393 (624)
Q Consensus 319 -----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (624)
.-..-..+. -.| -..-+..+...|....+...+..+... .+..-...+...-.+.|..+.++...
T Consensus 393 ~~~~~~~~~~~~~~---~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 393 LKIDKAPKPDSALT---QGP----EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred CCCCCCCchhhhhc---cCh----HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 000000000 001 112223344567777777777766653 22233344444455566666665544
Q ss_pred ccCCC------CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 006955 394 SSVPI------HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI 437 (624)
Q Consensus 394 ~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 437 (624)
..... .-+..|...+..++....++.++-.----.+.++.|+..
T Consensus 463 ~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 463 IAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred hhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 33221 112235555555555445555443333333455666543
No 270
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.86 E-value=3.2 Score=34.24 Aligned_cols=126 Identities=11% Similarity=0.047 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhh
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLG 483 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 483 (624)
...++..+...+.+......++.+...+ ..+...++.++..|++.+ .+.....++. .++.......++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3445566666666777777777776655 244556666666665543 2333333331 122333344566666
Q ss_pred ccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc-CChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 484 RFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH-NNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
+.+.++++..++.++.. +...+..+... ++.+.|.+++.+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 66667777777766542 12222223333 666777666664 224555655555443
No 271
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.83 E-value=0.44 Score=46.28 Aligned_cols=142 Identities=9% Similarity=0.086 Sum_probs=93.9
Q ss_pred ccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGE 527 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 527 (624)
..|++-.|.+-+....+.. +-++.............|+++.+...+...... +.....+...+++.....|.+++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3466655554444444432 223444444444556778888888887665432 3445567788888888888888888
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCC
Q 006955 528 IAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGD 594 (624)
Q Consensus 528 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (624)
...+.++..+-.++.+....+......|-++++...|++....+.+.+.| |+-...-.+.|.+|+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g--~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG--WVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc--ceeeeccceeccCcc
Confidence 88888888776677776666666667788888888888887766555555 666555666665444
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.81 E-value=2.8 Score=34.54 Aligned_cols=119 Identities=11% Similarity=0.134 Sum_probs=49.8
Q ss_pred HHHHHHcCCChhhHHHHHhcCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHH
Q 006955 58 VIAGLMQSDNVQGAKEVFDGME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAE 134 (624)
Q Consensus 58 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 134 (624)
++..+...+.+......++.+. ..+...++.++..|++.. ..+.++.++. ..+......+++.|.+.+-++.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAV 89 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHH
Confidence 4444444444444444444433 123334455555554432 2233333331 123333444555555555555555
Q ss_pred HHHHhcccCChhHHHHHHHHHHhC-CChHHHHHHhccCCCCChhHHHHHHHHH
Q 006955 135 SYFKEMGARDVASWTIMVNGLVRE-GRIVEARKLFDKMPAKDVQAWNLMIAGY 186 (624)
Q Consensus 135 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 186 (624)
-++.++.. +...+..+... ++.+.|.+.+.+. .++..|..++..+
T Consensus 90 ~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~ 135 (140)
T smart00299 90 ELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKAL 135 (140)
T ss_pred HHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 55544432 12222222222 4555555555432 2334444444443
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.64 E-value=2 Score=43.20 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=86.9
Q ss_pred HHHHhCCChhHHHHHhc--cCCC-CCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHH
Q 006955 91 SGYVCNGLIDEALRVFH--GMPL-KDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKL 167 (624)
Q Consensus 91 ~~~~~~g~~~~a~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 167 (624)
....-.|+++.+.+..+ ++.. -+..-.+.+++.+-+.|-.+.|.++.+ |+ ..-.+...+.|+++.|.++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHHhcCCHHHHHHH
Confidence 34455677777655543 2221 123346777777777888888877653 22 2334456678888888888
Q ss_pred hccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHH
Q 006955 168 FDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISV 247 (624)
Q Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~ 247 (624)
.++.. +...|..|.....+.|+++-|++.|++..+ +..|+-.|...|+.+.-.++.+.....+ -++....+
T Consensus 341 a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~--~~n~af~~ 411 (443)
T PF04053_consen 341 AKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG--DINIAFQA 411 (443)
T ss_dssp CCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHHH
T ss_pred HHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc--CHHHHHHH
Confidence 77654 566888888888888888888888887753 4456666666676655555544432211 23444444
Q ss_pred HHhcCChHHHHHHH
Q 006955 248 LIRNGLVKEAHSYL 261 (624)
Q Consensus 248 ~~~~~~~~~a~~~~ 261 (624)
+.-.|+.++..+++
T Consensus 412 ~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 412 ALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHT-HHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 44555555554444
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.48 E-value=2.4 Score=37.68 Aligned_cols=144 Identities=12% Similarity=0.020 Sum_probs=80.1
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh------hhHHHHHHHh
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD------ITFVGVLSAC 446 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~ 446 (624)
++.....|..+|.++.|-..+++.. -.....++++|+++|++...- +..+. ..+..+-..+
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralav-ve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAV-VEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHH-HhccchHHHHHHHHHHhhhHh
Confidence 3444555666665555544333221 123345677777777776542 11111 2333444456
Q ss_pred cccChHHHHHHHHHHhhhhc-CCC--CC-cchHHHHHHHhhccCChHHHHHHHHHcccC---CCCcCHHHHHHHHHHHHh
Q 006955 447 SYAGLVDQGRYYFDCMKNKY-FLQ--PR-SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD---GIEVSPTVWGALLGACRI 519 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~-~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~ 519 (624)
.+...+++|-..+.+-..-. .+. |+ -..|-..|-.|.-..++..|.++++.-.+. .-+-+..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 66677776655554322110 011 11 123555666777788999999999984432 1233566888888887 6
Q ss_pred cCChHHHHHHH
Q 006955 520 HNNIKVGEIAG 530 (624)
Q Consensus 520 ~g~~~~a~~~~ 530 (624)
.||.+++..++
T Consensus 240 ~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 EGDIEEIKKVL 250 (308)
T ss_pred cCCHHHHHHHH
Confidence 78888876664
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.47 E-value=4.1 Score=34.21 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcc-hHHH--
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSA-HYTC-- 477 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~-- 477 (624)
..|...++ +++.+..++|+.-|..+.+.|...=+. ..........+.|+...|...|+++-....+ |-+. -...
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHH
Confidence 34444443 467788999999999999876543222 2223344567889999999999998875322 3211 1112
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
-...+...|.++....-++.+...|-+.....-..|.-+-.+.|++..|.+.|+.+.+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2334567899999998888888766555666777888888899999999999999887
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.45 E-value=0.17 Score=30.06 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 543 VYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
++..|+.+|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788999999999999999998854
No 277
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.32 E-value=0.32 Score=45.10 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=52.6
Q ss_pred HHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC
Q 006955 444 SACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNN 522 (624)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 522 (624)
.-|.+.|.+++|+..+..... +.| |+.++..-..+|.+..++..|..-....+... ..-...|..-+.+-...|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 345666667777766666554 345 66666666666666666666666555555321 1112233333444445566
Q ss_pred hHHHHHHHHHHHccCCC
Q 006955 523 IKVGEIAGERVMELEPN 539 (624)
Q Consensus 523 ~~~a~~~~~~~~~~~p~ 539 (624)
..+|.+-++.++++.|+
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 66666666666666664
No 278
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.02 E-value=15 Score=40.89 Aligned_cols=156 Identities=16% Similarity=0.127 Sum_probs=94.5
Q ss_pred CChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCc
Q 006955 128 QRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDL 207 (624)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 207 (624)
++++.|..-+.++. ...|.-.++.--+.|-+.+|..++..=.+.-...|.+....+.+.+.+++|.-+|+..-+
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--- 967 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK--- 967 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---
Confidence 56666666666554 334555556666777788888776544444445566666667777888888887776643
Q ss_pred ccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcch---HHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCC
Q 006955 208 TSWKQLINGLVNSRRIDAAISYFKQMPETCEKT---WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGE 284 (624)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (624)
....+.+|..+|+|.+|+.+..++..+-... -..|..-+...++.-+|-+++...... ....+..|++...
T Consensus 968 --lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 968 --LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----PEEAVALLCKAKE 1041 (1265)
T ss_pred --HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----HHHHHHHHhhHhH
Confidence 2235667777888888888888776532222 255666666677666666665443311 1223344555555
Q ss_pred hHHHHHHHhhc
Q 006955 285 VGSAIKVFELM 295 (624)
Q Consensus 285 ~~~A~~~~~~~ 295 (624)
+++|.++-...
T Consensus 1042 ~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1042 WEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHhc
Confidence 66666554433
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.85 E-value=8.6 Score=36.23 Aligned_cols=17 Identities=12% Similarity=-0.281 Sum_probs=10.9
Q ss_pred HHhcCChHHHHHHHHHH
Q 006955 517 CRIHNNIKVGEIAGERV 533 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~ 533 (624)
+.+.++++.|...|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45666777777766644
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.81 E-value=0.23 Score=31.14 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=17.7
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
.+..+...|.+.|++++|+++|+++++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666777777776666665
No 281
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.73 E-value=0.61 Score=43.00 Aligned_cols=61 Identities=31% Similarity=0.378 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
++..++..+...|+++.+...++++.+.+|-+...|..++.+|...|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455555666666666666666666666666666677777777777777766666666654
No 282
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.69 E-value=6.5 Score=34.42 Aligned_cols=162 Identities=19% Similarity=0.184 Sum_probs=91.1
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 006955 400 DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCV 478 (624)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (624)
-+..||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++.-.|++.-|.+-+...-+. .|+...-...
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DPfR~LW 172 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDPFRSLW 172 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCChHHHHH
Confidence 345778777778888888888888888877 34432 22222222445567888777665554443 2322211111
Q ss_pred HHHhhccCChHHHHHHHHH-cccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------CchHHHHHHH
Q 006955 479 VDLLGRFGLIDEAMNLLNE-IRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN-------SGVYLILTEM 550 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~-~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~ 550 (624)
+-.-...-++.+|..-+.+ .. ..|..-|...+-.+.- |... .+.+++++.....++ ..+|..|++-
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 1112234466666654443 33 3444455544433321 1111 123344444433322 3578899999
Q ss_pred HHhcCChHHHHHHHHHHHHCCC
Q 006955 551 YLSCGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 551 ~~~~g~~~~A~~~~~~m~~~~~ 572 (624)
|...|+.++|..+|+-....++
T Consensus 247 ~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HhccccHHHHHHHHHHHHHHhH
Confidence 9999999999999987766543
No 283
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.60 E-value=16 Score=43.92 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 006955 507 PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVK 573 (624)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 573 (624)
..+|-...+.+...|.++.|....-.+.+..+ +..+...++.+...|+...|+.++++..+...+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 45888899999999999999999999988774 688999999999999999999999998876543
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.57 E-value=11 Score=36.89 Aligned_cols=148 Identities=9% Similarity=-0.037 Sum_probs=78.9
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC--Ccch
Q 006955 400 DIISWNSIICGLAYHGYAEKALELFERMRLTDFKP---DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP--RSAH 474 (624)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~ 474 (624)
...+|..++..+.+.|+++.|...+.++...+..+ .+.....-+..+-..|+..+|...++...... +.. ++..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~-~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR-LSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhcccccc
Confidence 34567778888888888888888888877643222 22333333445556677788888877776621 111 1111
Q ss_pred HHHHHHHhhccCChHHHHHHHHH-c-ccCCCCcCHHHHHHHHHHHHh------cCChHHHHHHHHHHHccCCCCCchHHH
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNE-I-RADGIEVSPTVWGALLGACRI------HNNIKVGEIAGERVMELEPNNSGVYLI 546 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~-~-~~~g~~p~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~ 546 (624)
...+...+.. ....... - .......-..++..+..-+.. .++.+.+...|..+.+..|.....+..
T Consensus 224 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 1111111100 0000000 0 000000011222223333333 378889999999999999988888888
Q ss_pred HHHHHHhc
Q 006955 547 LTEMYLSC 554 (624)
Q Consensus 547 l~~~~~~~ 554 (624)
++..+...
T Consensus 298 ~a~~~~~~ 305 (352)
T PF02259_consen 298 WALFNDKL 305 (352)
T ss_pred HHHHHHHH
Confidence 77766543
No 285
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.42 E-value=22 Score=40.00 Aligned_cols=255 Identities=9% Similarity=-0.037 Sum_probs=157.6
Q ss_pred hHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCh-HHHHHHHHhcccCChhHH
Q 006955 70 GAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRM-DLAESYFKEMGARDVASW 148 (624)
Q Consensus 70 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~ 148 (624)
....+.+.+..+|+.+-...+..+.+.+.......+...+..++...-...+.++.+.+.. .....+...+..+|+.+-
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVR 701 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHH
Confidence 3345555556788888888888888887655444444444456666666666666554322 122223333444677777
Q ss_pred HHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHH-HH
Q 006955 149 TIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDA-AI 227 (624)
Q Consensus 149 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~ 227 (624)
...+..+...+.. ....++..+..+|..+-...+..+.+.+..+ .+.....+++..+-...+.++...+..+. +.
T Consensus 702 ~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~ 777 (897)
T PRK13800 702 AAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAG 777 (897)
T ss_pred HHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhH
Confidence 7777776654322 1234445556777777777777777665443 34444556677777777777777665443 33
Q ss_pred HHhhh-CCCCCcchHHHHHHHHHhcCChHHHHH-HHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhh
Q 006955 228 SYFKQ-MPETCEKTWNSIISVLIRNGLVKEAHS-YLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNV 305 (624)
Q Consensus 228 ~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 305 (624)
..+.. +.++|+..-...+.++...|....+.. +...+..++..+-...+.++...+..+....+...+..++...-..
T Consensus 778 ~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~ 857 (897)
T PRK13800 778 DAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKA 857 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHH
Confidence 43444 445788888888888888887655433 3333446676777778888888877555555555556677776667
Q ss_pred hhhHhhcCCCchHHHHHHHHhHH
Q 006955 306 MIFGLGENDLGEEGLKFFVQMKE 328 (624)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~m~~ 328 (624)
.+.++.+......+...+....+
T Consensus 858 A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 858 AVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhccCCCHHHHHHHHHHHh
Confidence 77777665444567777776665
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.34 E-value=1.5 Score=37.79 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=67.2
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC--CCCch----H
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEP--NNSGV----Y 544 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~~~----~ 544 (624)
..+..+.+.|.+.|+.+.|.+.+.++.+....|. ...+-.++..+...|++..+.....++..... .+... -
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566788899999999999999999887655554 33667788888889999999999888877332 22211 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 006955 545 LILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
..-+-.+...|++.+|.+.|-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHc
Confidence 1222234567899999988853
No 287
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.07 E-value=18 Score=38.19 Aligned_cols=148 Identities=14% Similarity=0.184 Sum_probs=81.8
Q ss_pred HHHHHcCCChhhHHHHHhcCC--CC---CchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHH
Q 006955 59 IAGLMQSDNVQGAKEVFDGME--VR---DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLA 133 (624)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (624)
++-+.+.+.+++|+.+.+... .| -..+....+..+.-.|++++|-...-.|...+..-|..-+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 344556666777777666554 11 2345666677777777777777777777666666666666666665555433
Q ss_pred HHHHHhccc-CChhHHHHHHHHHHhCCChHHHHHHhccCC-------------C-------CChhHHHHHHHHHHHcCCh
Q 006955 134 ESYFKEMGA-RDVASWTIMVNGLVREGRIVEARKLFDKMP-------------A-------KDVQAWNLMIAGYLDNGCV 192 (624)
Q Consensus 134 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------------~-------~~~~~~~~l~~~~~~~g~~ 192 (624)
..++-.-.. -++..|..++..+.. .+...-.+...+.. + .+...-..|+..|...+++
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y 521 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKY 521 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccCh
Confidence 333221111 144556555555544 33333222222222 0 0222334477777888888
Q ss_pred hHHHHHHHHcccCCc
Q 006955 193 GVAEDLFQKMHDRDL 207 (624)
Q Consensus 193 ~~A~~~~~~~~~~~~ 207 (624)
.+|.+++-...+.++
T Consensus 522 ~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 522 EKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHhccChHH
Confidence 888888877766543
No 288
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=0.48 Score=41.71 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=70.0
Q ss_pred hhccCChHHHHHHHHHcccCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEVSPT-VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDA 560 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 560 (624)
|....++..|+..|.+.+. +.|+.. .|+.=+.++.+..+++.+..-..+++++.|+.......|+........+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 4445677888888877766 678764 4556666778889999999999999999998888899999999999999999
Q ss_pred HHHHHHHHH
Q 006955 561 KRIFAQMKE 569 (624)
Q Consensus 561 ~~~~~~m~~ 569 (624)
+..+.+...
T Consensus 98 I~~Lqra~s 106 (284)
T KOG4642|consen 98 IKVLQRAYS 106 (284)
T ss_pred HHHHHHHHH
Confidence 999998843
No 289
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.87 E-value=0.29 Score=28.40 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666667777777777777777777766
No 290
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.81 E-value=37 Score=41.12 Aligned_cols=363 Identities=13% Similarity=0.077 Sum_probs=187.0
Q ss_pred HHHHHHHhCCChHHHHHHhccC----CCC--ChhHHHHHHHHHHHcCChhHHHHHHHH-cccCCcccHHHHHHHHHcCCC
Q 006955 150 IMVNGLVREGRIVEARKLFDKM----PAK--DVQAWNLMIAGYLDNGCVGVAEDLFQK-MHDRDLTSWKQLINGLVNSRR 222 (624)
Q Consensus 150 ~l~~~~~~~g~~~~a~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 222 (624)
.|..+-.++|.+.+|.-.++.- .+. ...-+..+...|+.-++++...-+... ..+++ ...-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4445666888888888888873 222 223445555588888888888777763 32222 2344555667889
Q ss_pred HHHHHHHhhhCCC--CC-cchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHH-HHHHHhcCChHHHHHHHhhc
Q 006955 223 IDAAISYFKQMPE--TC-EKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNV-IVGYFEMGEVGSAIKVFELM 295 (624)
Q Consensus 223 ~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~ 295 (624)
+..|...|+.+.+ |+ ..+++-++......|.++......+-.. .+...-++.+ +.+..+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 9999999998886 43 5578888888878888877776655555 2222223332 334466677777666655
Q ss_pred CCCCceehhhh--hhHhhcCCCchH--HHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcc
Q 006955 296 TTRDVTVWNVM--IFGLGENDLGEE--GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT 371 (624)
Q Consensus 296 ~~~~~~~~~~l--~~~~~~~~~~~~--a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (624)
..+..+|... .....+..+-+. -.+..+-+++.-+.| +.+|+..|.+..
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~------------------ 1595 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVR------------------ 1595 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHH------------------
Confidence 4455566554 222222222221 112333333221111 112222221111
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCCCC-----CchhHHHHHH---HHHHcCChHHHHHHHHHHHHCCCCCC-----hhh
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVPIH-----DIISWNSIIC---GLAYHGYAEKALELFERMRLTDFKPD-----DIT 438 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~---~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~ 438 (624)
.|..++..+.-.. .+.-.+.+...... +..-|-.-+. .+.+..++- +.+=+.+......|+ ..+
T Consensus 1596 ~Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epI--La~RRs~l~~~~~~~~~~~~ge~ 1672 (2382)
T KOG0890|consen 1596 SYEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPI--LAFRRSMLDLRMRSNLKSRLGEC 1672 (2382)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHH--HHHHHHHHHHhccccccchhHHH
Confidence 1222222222111 11111111111111 1111221111 111111111 111111111112222 246
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCC-------cCHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIE-------VSPTVWG 511 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-------p~~~~~~ 511 (624)
|....+.+-..|.++.|...+-.+.+.. -+..+--.+..+...|+-..|+.++++..+...+ +.+..-+
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~r----~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n 1748 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESR----LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVN 1748 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcc----cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhh
Confidence 7777777777889998887776666531 2444555667778889999999998887654311 1233333
Q ss_pred HHHHH--------H-HhcCC--hHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 512 ALLGA--------C-RIHNN--IKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 512 ~l~~~--------~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
.++.. | ...|+ .+..++.|..+.++.|.....+..++.-|
T Consensus 1749 ~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1749 LLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 33322 2 12333 34557788888888887777777777443
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.75 E-value=25 Score=39.16 Aligned_cols=141 Identities=11% Similarity=0.000 Sum_probs=80.9
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChH
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLV 452 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 452 (624)
+.-.++.-.+.|-+++|+.++.--...--..|.+...-+.....+++|.-+|+..-+ ..-.+.+|..+|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 333444444555555555554332222223455555556667777777777766432 12346677888888
Q ss_pred HHHHHHHHHhhhhcCCCCCcch--HHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 453 DQGRYYFDCMKNKYFLQPRSAH--YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
.+|..+..++... -+... -..|+..+...++.-+|-+++.+... .|.. .+..+++...+++|.+..
T Consensus 982 r~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~~-----av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 982 REALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DPEE-----AVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred HHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHHH-----HHHHHhhHhHHHHHHHHH
Confidence 8888887765531 12222 24677777888888888888887763 3321 223344455566666655
Q ss_pred HHHH
Q 006955 531 ERVM 534 (624)
Q Consensus 531 ~~~~ 534 (624)
....
T Consensus 1050 ~~~~ 1053 (1265)
T KOG1920|consen 1050 SKAK 1053 (1265)
T ss_pred Hhcc
Confidence 5444
No 292
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.70 E-value=0.91 Score=41.87 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=46.8
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcc-----cCCCCcCHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIR-----ADGIEVSPTVWG 511 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~p~~~~~~ 511 (624)
++..++..+...|+.+.+...++++.. ..| +...|..++.+|.+.|+...|+..|+++. +.|+.|.+.+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~---~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE---LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 334455555666666666666666665 345 66667777777777777777777666543 346666666555
Q ss_pred HHHHH
Q 006955 512 ALLGA 516 (624)
Q Consensus 512 ~l~~~ 516 (624)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44444
No 293
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.57 E-value=6 Score=31.57 Aligned_cols=59 Identities=8% Similarity=0.071 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 405 NSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
...+..+...|+-+.-.+++.++.+. -.|++.....+..+|.+.|+..++.+++.++-+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33445555555555555555555442 245555555555555555655555555555554
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.36 E-value=0.35 Score=28.66 Aligned_cols=26 Identities=12% Similarity=-0.010 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
|..|...|...|++++|+.++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666777777777777777777543
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.35 E-value=1.5 Score=35.83 Aligned_cols=72 Identities=10% Similarity=-0.077 Sum_probs=34.3
Q ss_pred ccCChHHHHHHHHHcccCCCCcCHHHHHH-HHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006955 484 RFGLIDEAMNLLNEIRADGIEVSPTVWGA-LLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 557 (624)
..++.+++..+++.|.- +.|+..-... -...+...|++.+|.++++.+.+..|..|..-..++.++...|+.
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 34555555555555544 3443322221 222344555555555555555555544444444444455555543
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.98 E-value=1.8 Score=35.99 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=54.4
Q ss_pred hHHHHHHHh---hccCChHHHHHHHHHcccCCCCcCHHHHHHH-HHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 474 HYTCVVDLL---GRFGLIDEAMNLLNEIRADGIEVSPTVWGAL-LGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 474 ~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
+.+.|++.. .+.++.+++..++..+.- +.|.......+ ...+...|++.+|.++++.+.+..|..+..-..++.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 344444433 466778888888877765 56654443332 344567788888888888877777766766667777
Q ss_pred HHHhcCChH
Q 006955 550 MYLSCGRRE 558 (624)
Q Consensus 550 ~~~~~g~~~ 558 (624)
++...|+.+
T Consensus 87 CL~~~~D~~ 95 (160)
T PF09613_consen 87 CLYALGDPS 95 (160)
T ss_pred HHHHcCChH
Confidence 777777654
No 297
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.93 E-value=25 Score=37.59 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=30.4
Q ss_pred cCChHHHHHHHHHHHccC---CCCCch-H-----HHHHHHHHhcCChHHHHHHHHHHH
Q 006955 520 HNNIKVGEIAGERVMELE---PNNSGV-Y-----LILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~---p~~~~~-~-----~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
.|+..+.......+.... |+.... | ..+...|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677777666666655533 222222 2 244455778899999988877653
No 298
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.87 E-value=1.2 Score=40.27 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=70.5
Q ss_pred HHHHhhcC--CCCceehhhhhhHhh-----cCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCC------------
Q 006955 289 IKVFELMT--TRDVTVWNVMIFGLG-----ENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLP------------ 349 (624)
Q Consensus 289 ~~~~~~~~--~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------ 349 (624)
.+.|..+. ++|-.+|-+.+..+. +.+..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 345556666665543 34566667777888899999999999999998775532
Q ss_pred ----CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCH
Q 006955 350 ----TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNI 386 (624)
Q Consensus 350 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (624)
+-.-+..++++|..+|+-||..+-..|++++++.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345778888899999999988888888888887643
No 299
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.85 E-value=2.5 Score=36.29 Aligned_cols=100 Identities=8% Similarity=0.028 Sum_probs=67.5
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHh
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQPR-----SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRI 519 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 519 (624)
+...|++++|..-+..+... ++|. ...|..-..++.+.+.++.|++-..+.++ +.|+ ...+..-..+|-+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHh
Confidence 45677888888877777764 2222 23455555677788899999988888876 3443 2233333446777
Q ss_pred cCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 520 HNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
...++.|+.-|+++.+..|.....-...++
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 889999999999999999976554444443
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.82 E-value=3.9 Score=34.30 Aligned_cols=129 Identities=18% Similarity=0.101 Sum_probs=86.9
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHH-
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL- 514 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~- 514 (624)
..|...+. +.+.+..++|..-|..+.+. |...- +-..-.........|+...|+..|+++-.. .|.|....-+.
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d--t~~P~~~rd~AR 135 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD--TSIPQIGRDLAR 135 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc--CCCcchhhHHHH
Confidence 34444443 45667889999999988875 22111 111122344567889999999999998763 44444443332
Q ss_pred --HH--HHhcCChHHHHHHHHHHHc-cCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 515 --GA--CRIHNNIKVGEIAGERVME-LEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 515 --~~--~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.+ +..+|.++....-.+-+.. .+|-....-..|+-+-.+.|++.+|.+.|..+..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23 4678888887776665543 4454556677899999999999999999998754
No 301
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.79 E-value=2.5 Score=38.46 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=45.8
Q ss_pred HHHHhccCC--CCCchhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 389 ALLEFSSVP--IHDIISWNSIICGLAYH-----GYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 389 A~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
.+..|..+. ++|-.+|-.++..+..+ +..+-....++.|.+-|+.-|..+|+.|+..+-+
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 345566666 56777888888777643 5667777788999999999999999999987655
No 302
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.53 E-value=9.9 Score=37.28 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=56.5
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC----CCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 505 VSPTVWGALLGACRIHNNIKVGEIAGERVMELEP----NNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 505 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
....+|..+...+.+.|.++.|...+.++....+ ..+.....-++.+...|+..+|...++...+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3456888999999999999999999999988552 256778888999999999999999999888743
No 303
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=90.48 E-value=20 Score=35.76 Aligned_cols=228 Identities=11% Similarity=0.033 Sum_probs=117.6
Q ss_pred HHHHHhcCChHHHHHHHhhCC--CCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHH
Q 006955 28 IRGYFKNGFLDNAMCLFNQMP--ERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRV 105 (624)
Q Consensus 28 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 105 (624)
+.++...| +.+...+-... .++...+.....++....+......+.+.+..++..+-...+.++...+.......+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L 122 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL 122 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH
Confidence 55666666 45666555554 234444444444444333333355555556666666777777777777766665555
Q ss_pred hccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHH
Q 006955 106 FHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAG 185 (624)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 185 (624)
..-...+++......+.++...+ .+-...+..-+..+|...-..-+.++...|+.+..-.+..-....|..+-..-+.+
T Consensus 123 ~~~L~~~~p~vR~aal~al~~r~-~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~a 201 (410)
T TIGR02270 123 EPLLAASEPPGRAIGLAALGAHR-HDPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEA 201 (410)
T ss_pred HHHhcCCChHHHHHHHHHHHhhc-cChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHH
Confidence 55555566665555566665433 22222233333345666666666666666654433333333335566666666666
Q ss_pred HHHcCChhHHHHHHHH-cccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 006955 186 YLDNGCVGVAEDLFQK-MHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYL 261 (624)
Q Consensus 186 ~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 261 (624)
....|. ..|...+.. ..+++......+...+...|. +++.+.+..+.+. ..+-...+.++...|+.....-+.
T Consensus 202 l~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d-~~vr~~a~~AlG~lg~p~av~~L~ 275 (410)
T TIGR02270 202 GLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA-AATRREALRAVGLVGDVEAAPWCL 275 (410)
T ss_pred HHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC-hhhHHHHHHHHHHcCCcchHHHHH
Confidence 677776 555555554 334444443333333332222 2444444444331 114445555555555554444333
No 304
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.45 E-value=0.81 Score=42.56 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=60.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccC
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFG 486 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 486 (624)
.+-|.+.|.+++|+..|..... +.| |.+++..-..+|.+...+..|..-...+.... ..-...|+.-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 3568899999999999998776 567 88888888889999888887776555544310 001222333333333345
Q ss_pred ChHHHHHHHHHcccCCCCcCH
Q 006955 487 LIDEAMNLLNEIRADGIEVSP 507 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~ 507 (624)
...+|.+-++..++ +.|..
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHh--hCccc
Confidence 56666666666555 56663
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.28 E-value=27 Score=36.96 Aligned_cols=144 Identities=14% Similarity=0.171 Sum_probs=68.2
Q ss_pred HHhCCChHHHHHHhccCCCC-----ChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHH
Q 006955 155 LVREGRIVEARKLFDKMPAK-----DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISY 229 (624)
Q Consensus 155 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (624)
+.+.+.+++|..+.+..... -.......|..+.-.|++++|-...-+|...+..-|..-+..+...++......+
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~ 445 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY 445 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc
Confidence 34445555555554443321 1124444555555555555555555555555555555444444444444333322
Q ss_pred hhhCCC-CCcchHHHHHHHHHhcCChHHHHHHHhhcC--------------------CCCcchhhHHHHHHHhcCChHHH
Q 006955 230 FKQMPE-TCEKTWNSIISVLIRNGLVKEAHSYLEKYP--------------------YSNIASWTNVIVGYFEMGEVGSA 288 (624)
Q Consensus 230 ~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------------------~~~~~~~~~l~~~~~~~g~~~~A 288 (624)
+-.-.. -++..|..++-.+.. .+...-.++...-. ..+......|+..|...+++..|
T Consensus 446 lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~A 524 (846)
T KOG2066|consen 446 LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKA 524 (846)
T ss_pred CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHH
Confidence 222111 133345555554444 22211111111111 11222334477788888888888
Q ss_pred HHHHhhcCCCC
Q 006955 289 IKVFELMTTRD 299 (624)
Q Consensus 289 ~~~~~~~~~~~ 299 (624)
+.++-.+.+++
T Consensus 525 l~~ylklk~~~ 535 (846)
T KOG2066|consen 525 LPIYLKLQDKD 535 (846)
T ss_pred HHHHHhccChH
Confidence 88887776653
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.21 E-value=0.49 Score=27.34 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
..+..++.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999887653
No 307
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.18 E-value=0.2 Score=29.25 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=14.9
Q ss_pred CC-CcchHHHHHHHhhccCChHHHH
Q 006955 469 QP-RSAHYTCVVDLLGRFGLIDEAM 492 (624)
Q Consensus 469 ~p-~~~~~~~l~~~~~~~g~~~~A~ 492 (624)
.| ++..|..+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 35 5666666666666666666654
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.05 E-value=14 Score=33.43 Aligned_cols=182 Identities=10% Similarity=0.018 Sum_probs=95.5
Q ss_pred hcCCCchHHHHHHHHhHHcCCCCCHH---HHHHHHHHHcCCCCcHHHHHHHHHHHHh---CC--CCCcchhHHHHHHhHh
Q 006955 311 GENDLGEEGLKFFVQMKESGPSPDNA---TFTSVLTICSDLPTLDLGRQIHAQAIKI---AR--NQFTTVSNAMITMYAR 382 (624)
Q Consensus 311 ~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~ 382 (624)
.+...+++|+.-|.+..+..-.-... .+..++....+.+++++....+.++... .+ ..+....|++++.-..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 34557889999998877643222333 3445666778888888888777766542 11 2234445566665555
Q ss_pred hCCHHHHHHHhccCC-----CCCc----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCh-------hhHHHH
Q 006955 383 CGNIQSALLEFSSVP-----IHDI----ISWNSIICGLAYHGYAEKALELFERMRLTDF----KPDD-------ITFVGV 442 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~----~p~~-------~~~~~l 442 (624)
..+.+--.+.++.-. ..+. .+-..+...|...+.+.+..++++++.+.-- ..|. ..|..=
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 555444443333221 1111 1233455666666677777777766654311 1111 234444
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHH----HhhccCChHHHH
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD----LLGRFGLIDEAM 492 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~A~ 492 (624)
+..|....+-.....+++....-...-|.+.+...+-. ...+.|++++|.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 44555555555555566554433223355544443321 233556676664
No 309
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=89.85 E-value=23 Score=35.40 Aligned_cols=178 Identities=9% Similarity=-0.069 Sum_probs=95.7
Q ss_pred HHHHHcCCChhhHHHHHhcCC--CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHH
Q 006955 59 IAGLMQSDNVQGAKEVFDGME--VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESY 136 (624)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (624)
+.++...| +.+...+.... .++...+.....++....+......+.+.+..++......+.+++...++......+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L 122 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL 122 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH
Confidence 55666666 44555444443 334444444444444333333345555555556666777888888888777766666
Q ss_pred HHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHH
Q 006955 137 FKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLING 216 (624)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 216 (624)
..-+..+++......+.++...+. +....+..-+..+|..+-..-+.+++..+..+..-.+..-....|..+-..-+.+
T Consensus 123 ~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~a 201 (410)
T TIGR02270 123 EPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEA 201 (410)
T ss_pred HHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHH
Confidence 666655676666666666654432 2222222223355666666666666666654433333333334555555555666
Q ss_pred HHcCCCHHHHHHHhhh-CCCCCcch
Q 006955 217 LVNSRRIDAAISYFKQ-MPETCEKT 240 (624)
Q Consensus 217 ~~~~~~~~~A~~~~~~-~~~~~~~~ 240 (624)
....|. .+|...+.. ..+++...
T Consensus 202 l~~lG~-~~A~~~l~~~~~~~g~~~ 225 (410)
T TIGR02270 202 GLLAGS-RLAWGVCRRFQVLEGGPH 225 (410)
T ss_pred HHHcCC-HhHHHHHHHHHhccCccH
Confidence 666665 444444443 33344433
No 310
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.40 E-value=19 Score=33.89 Aligned_cols=162 Identities=9% Similarity=-0.054 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 006955 403 SWNSIICGLAYHGYA---EKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCV 478 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~---~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (624)
+...++.+|...+.. ++|..+++.+... -|+ +..+..-+..+.+.++.+.+.+.+.+|.... .-....+...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~~~~~~ 161 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccchHHHH
Confidence 455666777766654 4466666666553 333 3344455666666888888888888888753 2133444444
Q ss_pred HHHhh--ccCChHHHHHHHHHcccCCCCcCHH-HHHHHH-H-H--HHhcCC------hHHHHHHHHHHHc--cCCCCCch
Q 006955 479 VDLLG--RFGLIDEAMNLLNEIRADGIEVSPT-VWGALL-G-A--CRIHNN------IKVGEIAGERVME--LEPNNSGV 543 (624)
Q Consensus 479 ~~~~~--~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~-~-~--~~~~g~------~~~a~~~~~~~~~--~~p~~~~~ 543 (624)
+..+- .......|...+..+....+.|... ....++ . . ....++ .+....+++.+.+ ..|-++.+
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 44442 1233456777777766555566553 222221 1 1 112111 3444444553333 22323322
Q ss_pred ---H----HHHHHHHHhcCChHHHHHHHHHHH
Q 006955 544 ---Y----LILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 544 ---~----~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
. -.-+....+.++|++|.+.++-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 223445778999999999988543
No 311
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.30 E-value=9.5 Score=36.10 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHCCCCCChh--hHHHHHHHhcccCh--HHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 006955 418 EKALELFERMRLTDFKPDDI--TFVGVLSACSYAGL--VDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480 (624)
Q Consensus 418 ~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 480 (624)
+.++.+|+.+.+.|+..+.. ....++..+..... ..++.++++.+.+. ++++....|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 45666777777767665542 23333332222222 33566666666664 56665555554433
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.17 E-value=0.67 Score=26.84 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.+|..++.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999987653
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.53 E-value=0.65 Score=25.05 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=17.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677777888888888877765
No 314
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.48 E-value=3.3 Score=31.18 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=43.0
Q ss_pred HHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 490 EAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
+..+-++.+....+-|+|.+..+.+.+|.+.+|+..|.++++-+...-.+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 45666777777778899999999999999999999999999998875554444666664
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.46 E-value=2.7 Score=36.44 Aligned_cols=78 Identities=19% Similarity=0.135 Sum_probs=58.0
Q ss_pred hhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC----CCCchHHHHHHHHHhcCCh
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEP----NNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~ 557 (624)
..+.|+ +.|.+.|-++...+.--++.....|. .|....|.++++.++-+++++.+ .|+..+..|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 345565 77888888888776444555544444 44457799999999999998543 2688899999999999999
Q ss_pred HHHH
Q 006955 558 EDAK 561 (624)
Q Consensus 558 ~~A~ 561 (624)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.44 E-value=2.9 Score=31.07 Aligned_cols=62 Identities=21% Similarity=0.136 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 487 LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
+.-++.+-++.+....+-|++.+..+.+.+|.+.+|+..|.++++-+...-..+...|-.+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 34456666777777778899999999999999999999999999987754432444555543
No 317
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.16 E-value=24 Score=33.46 Aligned_cols=148 Identities=9% Similarity=0.132 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcc--c----ChHHHHHHHHHHhhhhcCCCC--CcchHHHHHHHhhccCC--
Q 006955 418 EKALELFERMRLTDFKPDDITFVGVLSACSY--A----GLVDQGRYYFDCMKNKYFLQP--RSAHYTCVVDLLGRFGL-- 487 (624)
Q Consensus 418 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~-- 487 (624)
++.+.+++.|.+.|++-+..++.+....... . ....+|..+++.|++.+.+-- +-.++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4566778888888888887666553322222 2 235678888888888764422 23333333322 3333
Q ss_pred --hHHHHHHHHHcccCCCCcCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHccCCC-CCchHHHHHHHHHhcCChHHH
Q 006955 488 --IDEAMNLLNEIRADGIEVSPT--VWGALLGACRIHNN--IKVGEIAGERVMELEPN-NSGVYLILTEMYLSCGRREDA 560 (624)
Q Consensus 488 --~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A 560 (624)
.+.+..+|+.+.+.|+..+.. ....++..+-...+ ..++..+++.+.+..-. ....|..++-.-.-.+..++.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 355667777777777766422 33333333322211 34666677777664422 223344444333333333244
Q ss_pred HHHHHHH
Q 006955 561 KRIFAQM 567 (624)
Q Consensus 561 ~~~~~~m 567 (624)
.+-+.++
T Consensus 237 ~~~i~ev 243 (297)
T PF13170_consen 237 VEEIKEV 243 (297)
T ss_pred HHHHHHH
Confidence 4443333
No 318
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.82 E-value=21 Score=32.44 Aligned_cols=242 Identities=15% Similarity=0.111 Sum_probs=136.7
Q ss_pred cCChHHHHHHHhhcCCC-------CceehhhhhhHhhcCCCchHHHHHHHHhHH---cCC--CCCHHHHHHHHHHHcCCC
Q 006955 282 MGEVGSAIKVFELMTTR-------DVTVWNVMIFGLGENDLGEEGLKFFVQMKE---SGP--SPDNATFTSVLTICSDLP 349 (624)
Q Consensus 282 ~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~--~p~~~~~~~ll~~~~~~~ 349 (624)
..++++|+.-|+++.+. .......++..+.+.+++++.++.|++|.. +.+ .-+....++++.-.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34677777777776532 223455678888889999999888888753 111 234556777777777777
Q ss_pred CcHHHHHHHHHHHHh-----CCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC--------CC-------CchhHHHHHH
Q 006955 350 TLDLGRQIHAQAIKI-----ARNQFTTVSNAMITMYARCGNIQSALLEFSSVP--------IH-------DIISWNSIIC 409 (624)
Q Consensus 350 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~-------~~~~~~~l~~ 409 (624)
+.+....+++.-.+. +-..=-.+-+.|...|...|++.+..+++.++. .. -...|..-|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 777776666643321 111111233457777877777777777766554 01 1246777788
Q ss_pred HHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHh-----cccChHHHHHHHHHHhhhhcCC--CCC---cchHHHH
Q 006955 410 GLAYHGYAEKALELFERMRLT-DFKPDDITFVGVLSAC-----SYAGLVDQGRYYFDCMKNKYFL--QPR---SAHYTCV 478 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~--~p~---~~~~~~l 478 (624)
.|....+-.+...++++.... .--|.+.... +++-| .+.|++++|..-|=++-+.+.- .|. ---|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 888888888888888876652 2345544443 44444 4568888876544333332211 121 1124455
Q ss_pred HHHhhccCChHHHHHHHHH--cccCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 479 VDLLGRFGLIDEAMNLLNE--IRADGIEVSPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~--~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
.+.+.+.|- .-|+. +.--.-.|.......|+.+|.. ++..+-++++
T Consensus 279 ANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 279 ANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred HHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 556655541 01111 1111123444566777777743 3444444333
No 319
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.79 E-value=11 Score=35.82 Aligned_cols=132 Identities=17% Similarity=0.064 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC---C--ChhhHHHHHHHhcccChHHHHHHHHHHhhhh---cCCCCCcchH
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFK---P--DDITFVGVLSACSYAGLVDQGRYYFDCMKNK---YFLQPRSAHY 475 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~---p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~ 475 (624)
..++..++...+.++++++.|+...+---. | ....+..+...|.+..+.++|.-+..+..+- .++..-...|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 334555666666777777777766542111 1 1135666667777777777777666554431 1211111111
Q ss_pred -----HHHHHHhhccCChHHHHHHHHHccc----CCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 476 -----TCVVDLLGRFGLIDEAMNLLNEIRA----DGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 476 -----~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
-.+.-++-..|+...|.+..++..+ .|-.| -......+...|...||.+.|..-|+.+..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 1234455566777777777766433 33333 244667777889999999999888888776
No 320
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.16 E-value=2.2 Score=37.16 Aligned_cols=113 Identities=16% Similarity=0.090 Sum_probs=78.6
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCC
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNN 522 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 522 (624)
.|-+.|-+.-|+--|..... +.|+ +..||.|.--+...|+++.|.+.|+...+ +.|. ..+...-.-++.-.|+
T Consensus 74 lYDSlGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGR 148 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCc
Confidence 46677888888888877765 6784 77788888888899999999999999887 4553 2222222233456789
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHH--hcCChHHHHHHHH
Q 006955 523 IKVGEIAGERVMELEPNNSGVYLILTEMYL--SCGRREDAKRIFA 565 (624)
Q Consensus 523 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~ 565 (624)
++.|.+-+-+--+-+|+||---. +.|. ..-++.+|..-+.
T Consensus 149 ~~LAq~d~~~fYQ~D~~DPfR~L---WLYl~E~k~dP~~A~tnL~ 190 (297)
T COG4785 149 YKLAQDDLLAFYQDDPNDPFRSL---WLYLNEQKLDPKQAKTNLK 190 (297)
T ss_pred hHhhHHHHHHHHhcCCCChHHHH---HHHHHHhhCCHHHHHHHHH
Confidence 99999999888888887763322 2233 2345666665443
No 321
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.16 E-value=15 Score=31.72 Aligned_cols=114 Identities=12% Similarity=0.054 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHCCCCCChhhHH--HHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchH-----HHHHHHhhccCChHHH
Q 006955 419 KALELFERMRLTDFKPDDITFV--GVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHY-----TCVVDLLGRFGLIDEA 491 (624)
Q Consensus 419 ~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A 491 (624)
+.....+++....-.....++. .+...+...+++++|...++..... |....+ -.|.+.....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555556665532111111222 2334577788888888888876642 322222 2456677788999999
Q ss_pred HHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 492 MNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 492 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
++.++...+.++. +.....-..++...|+-++|...|+++++..+
T Consensus 146 L~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 146 LKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 9998887754322 22233344667888899999999998888765
No 322
>PRK10941 hypothetical protein; Provisional
Probab=86.83 E-value=7 Score=36.27 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
..+.|-.+|...++++.|.+..+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 445666778999999999999999999999999989999999999999999999888887764
No 323
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.79 E-value=8.6 Score=40.36 Aligned_cols=155 Identities=13% Similarity=0.048 Sum_probs=84.1
Q ss_pred HHcCChHHHHHHHHHHHH-------CCCCCChhhHHHHHHHhccc----C-hHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 006955 412 AYHGYAEKALELFERMRL-------TDFKPDDITFVGVLSACSYA----G-LVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479 (624)
Q Consensus 412 ~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~----g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 479 (624)
....+.+.|+..++.+.+ .|. ......+..+|.+. . +.+.|..++...... | .|+....-..+
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~ 334 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVL 334 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHH
Confidence 344566677777666655 442 22334444444443 2 566677777776653 2 24443333333
Q ss_pred HHhhc-cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHH--HhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhc-C
Q 006955 480 DLLGR-FGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC--RIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSC-G 555 (624)
Q Consensus 480 ~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g 555 (624)
..... ..+...|.++|......|. ++...+..++-.. ....+.+.|..++.++.+.++ +.+...+...+... +
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVG 411 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccc
Confidence 32223 2456788888888777663 3333333322222 234577888888888877773 33333333333222 7
Q ss_pred ChHHHHHHHHHHHHCCCcc
Q 006955 556 RREDAKRIFAQMKENGVKK 574 (624)
Q Consensus 556 ~~~~A~~~~~~m~~~~~~~ 574 (624)
+++.+.-.+..+.+.|.+.
T Consensus 412 ~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYEV 430 (552)
T ss_pred cccHHHHHHHHHHHhhhhH
Confidence 7777777777777666543
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.66 E-value=1.5 Score=26.72 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVM 534 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~ 534 (624)
++.|...|...|++++|+.++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3444444444444444444444443
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.02 E-value=1.6 Score=26.63 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999998764
No 326
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.99 E-value=8.7 Score=33.17 Aligned_cols=95 Identities=15% Similarity=0.052 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCc------ch
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRS------AH 474 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~ 474 (624)
.+..+...|.+.|+.+.|++.|.++.+....|.. ..+..++......+++..+...+.++........+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4556667777777777777777777765444443 244556666666677777776666665431110011 11
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcc
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (624)
|..+ .+...+++..|-+.|-+..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 1234567777777766654
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.60 E-value=19 Score=29.65 Aligned_cols=52 Identities=21% Similarity=0.159 Sum_probs=35.6
Q ss_pred ccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhccCChHHHHHHHHHcccCC
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAMNLLNEIRADG 502 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (624)
..++.+++..+++.+.- +.|+ ...-..-...+...|+|.+|+.+|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36777788888777765 5563 2222334556678899999999999888743
No 328
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.48 E-value=5.6 Score=26.08 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=24.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCCch
Q 006955 512 ALLGACRIHNNIKVGEIAGERVMELEPNNSGV 543 (624)
Q Consensus 512 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 543 (624)
.+.-++.+.|+++.|.+..+.+++.+|.|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45556789999999999999999999966443
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.29 E-value=1.9 Score=24.79 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.+|..++..|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999987654
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.26 E-value=1.2 Score=25.31 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 543 VYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
++..++.+|...|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677889999999999999999998765
No 331
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.84 E-value=19 Score=32.14 Aligned_cols=85 Identities=15% Similarity=0.066 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHcccC--CCCcCHHHHHHHH---HHHHhcCChHHHHHHHHHHHccCCCCCch-------HHHHHHHHHh
Q 006955 486 GLIDEAMNLLNEIRAD--GIEVSPTVWGALL---GACRIHNNIKVGEIAGERVMELEPNNSGV-------YLILTEMYLS 553 (624)
Q Consensus 486 g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l~~~~~~ 553 (624)
.+++.|+..|++.-+- |-..+...-..++ ..-...+++.+|+.+|++.....-+|+-. +..-+-++.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4556666666554321 1112222222333 33356789999999999988865544432 1222222223
Q ss_pred cCChHHHHHHHHHHHHC
Q 006955 554 CGRREDAKRIFAQMKEN 570 (624)
Q Consensus 554 ~g~~~~A~~~~~~m~~~ 570 (624)
.++.=.+...+++-.+.
T Consensus 208 ~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQEL 224 (288)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 35555556666655444
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.73 E-value=1.8 Score=24.58 Aligned_cols=29 Identities=10% Similarity=-0.039 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 511 GALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
-.+..++...|++++|...++++++..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34556677788888888888888888774
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.56 E-value=2.1 Score=26.70 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 545 LILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999988654
No 334
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.05 E-value=5.7 Score=30.00 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 006955 419 KALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479 (624)
Q Consensus 419 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 479 (624)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++|+.++.+.+ +....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHH
Confidence 4555566666666788888888888888888888888888887777643 3333565554
No 335
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.95 E-value=0.68 Score=43.18 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=53.6
Q ss_pred cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 006955 485 FGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
.|.++.|++.+...+... +|....|..-..++.+.+....|++-+..+++++|+....|-.-..+....|+|++|.+.+
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 455666666666655532 2334444444455566666666666666666666666666666666666666777776666
Q ss_pred HHHHHCCCcc
Q 006955 565 AQMKENGVKK 574 (624)
Q Consensus 565 ~~m~~~~~~~ 574 (624)
....+.+...
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 6666655433
No 336
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.73 E-value=3 Score=34.50 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=34.5
Q ss_pred hhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006955 305 VMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHA 359 (624)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 359 (624)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 4555666667777777777777765545556666667777777766666666554
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.70 E-value=3.7 Score=34.81 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=43.5
Q ss_pred hHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 488 IDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHN-----------NIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
+++|+.-|++.+. +.|+ ..++..+..++...+ -+++|...|+++...+|.| ..|..-....
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~---- 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA---- 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH----
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH----
Confidence 3444555555554 5565 346666665554322 3567777788888899944 4555444443
Q ss_pred ChHHHHHHHHHHHHCCCc
Q 006955 556 RREDAKRIFAQMKENGVK 573 (624)
Q Consensus 556 ~~~~A~~~~~~m~~~~~~ 573 (624)
.+|-++..++.+.+..
T Consensus 124 --~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 124 --AKAPELHMEIHKQGLG 139 (186)
T ss_dssp --HTHHHHHHHHHHSSS-
T ss_pred --HhhHHHHHHHHHHHhh
Confidence 4577788777776643
No 338
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.17 E-value=3.9 Score=37.86 Aligned_cols=51 Identities=12% Similarity=-0.000 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhh
Q 006955 415 GYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNK 465 (624)
Q Consensus 415 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 465 (624)
-++++++.++..=.+-|+.||..+++.++..+.+.++..+|.++.-.+...
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 356788888887788888888888888888888888888887777766654
No 339
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.10 E-value=53 Score=32.86 Aligned_cols=298 Identities=10% Similarity=0.071 Sum_probs=154.0
Q ss_pred HhcCChHHHHHHHhhCC---C--CC-----cchHHHHHHHHHcCC-ChhhHHHHHhcCC---CCCc----hhHHHHHHHH
Q 006955 32 FKNGFLDNAMCLFNQMP---E--RD-----MFTYNTVIAGLMQSD-NVQGAKEVFDGME---VRDV----VTWNSMISGY 93 (624)
Q Consensus 32 ~~~g~~~~A~~~~~~~~---~--~~-----~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~----~~~~~l~~~~ 93 (624)
.-..|++.|..-+++.. + |+ ..+++.|...+.... .+..+..+++... +..+ .....|+...
T Consensus 58 ~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~ 137 (629)
T KOG2300|consen 58 RYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLH 137 (629)
T ss_pred HHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 34567777777777665 1 21 256777777777665 6777777777655 2222 1234566677
Q ss_pred HhCCChhHHHHHhccCCC-CCc--ccHHHHHHHHH------c---CCChHHHHHHHHhccc---CChh-------HHHH-
Q 006955 94 VCNGLIDEALRVFHGMPL-KDV--VSWNLVIGALV------N---CQRMDLAESYFKEMGA---RDVA-------SWTI- 150 (624)
Q Consensus 94 ~~~g~~~~a~~~~~~~~~-~~~--~~~~~l~~~~~------~---~~~~~~a~~~~~~~~~---~~~~-------~~~~- 150 (624)
.-..++..|.+++.--.. .|+ .+|..++..+. - ..++..+.....++.+ +|+. .|..
T Consensus 138 ~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~l 217 (629)
T KOG2300|consen 138 IIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVL 217 (629)
T ss_pred hhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 778888889888765543 222 23333332222 1 2334444444444443 2321 1211
Q ss_pred HHHHHHhCCChHHHHHHhccCC-------------------CCChh-------------HHHH-----HHHHHHHc--CC
Q 006955 151 MVNGLVREGRIVEARKLFDKMP-------------------AKDVQ-------------AWNL-----MIAGYLDN--GC 191 (624)
Q Consensus 151 l~~~~~~~g~~~~a~~~~~~~~-------------------~~~~~-------------~~~~-----l~~~~~~~--g~ 191 (624)
-+.-|.-.|+...+...++.+. .|.+. +|.. +..+|.+. ..
T Consensus 218 ql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~ 297 (629)
T KOG2300|consen 218 QLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKY 297 (629)
T ss_pred HHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHH
Confidence 1233455666665555554432 11111 1111 11222211 22
Q ss_pred hhHHHHHHHHcccCCcc----------cHHHHHHHHHcCCCHHHHHHHhhhCCC-----CCcc-------hHHHHHH-HH
Q 006955 192 VGVAEDLFQKMHDRDLT----------SWKQLINGLVNSRRIDAAISYFKQMPE-----TCEK-------TWNSIIS-VL 248 (624)
Q Consensus 192 ~~~A~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-------~~~~ll~-~~ 248 (624)
.|+|+...++.++.|.. ....++-+=.-.|++.+|++-+..|.+ |.+. ....++. .+
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 34444444555444421 122223333457888888887777764 3311 1222333 34
Q ss_pred HhcCChHHHHHHHhhcC----CCCcchh--hHHHHHHHhcCChHHHHHHHhhcCCCCceehhhh--------hhH--hhc
Q 006955 249 IRNGLVKEAHSYLEKYP----YSNIASW--TNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVM--------IFG--LGE 312 (624)
Q Consensus 249 ~~~~~~~~a~~~~~~~~----~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--------~~~--~~~ 312 (624)
...|.++.|+.-|..+. ..+...+ ..+.-.|.+.|+.+.-.++++.+..++..++..- +.+ ...
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55677788877766655 2222222 2345567778887777778877776655443321 111 244
Q ss_pred CCCchHHHHHHHHhHHc
Q 006955 313 NDLGEEGLKFFVQMKES 329 (624)
Q Consensus 313 ~~~~~~a~~~~~~m~~~ 329 (624)
.+++.+|...+++-.+.
T Consensus 458 qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKM 474 (629)
T ss_pred hccHHHHHHHHHHHHhh
Confidence 67788888777775543
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.08 E-value=75 Score=34.56 Aligned_cols=217 Identities=14% Similarity=0.076 Sum_probs=108.2
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCcc-------hhHHHH-HHhHhhCCHHHHHHHhccCC--------CCCchhHHHHHHH
Q 006955 347 DLPTLDLGRQIHAQAIKIARNQFTT-------VSNAMI-TMYARCGNIQSALLEFSSVP--------IHDIISWNSIICG 410 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~ 410 (624)
...++++|..+..++...-..|+.. .++++- ..-...|+++.|+++-+... ...+..+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 3455666666666555443232221 111111 12233567777766554332 3355667777788
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChh---hHHHHH--HHhcccChHH--HHHHHHHHhhhhcCC-CC----CcchHHHH
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDDI---TFVGVL--SACSYAGLVD--QGRYYFDCMKNKYFL-QP----RSAHYTCV 478 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll--~~~~~~g~~~--~a~~~~~~~~~~~~~-~p----~~~~~~~l 478 (624)
..-.|++++|..+.++..+..-.-+.. .|..+. ..+...|... +....+......+.- .| -..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 888899999988887765532222322 222222 2355566332 233333333322111 11 12334444
Q ss_pred HHHhhccCChHHHHHHHHHcccCC--CCcCHH----HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-Cch-HH-----
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADG--IEVSPT----VWGALLGACRIHNNIKVGEIAGERVMELEPNN-SGV-YL----- 545 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~-~~----- 545 (624)
..++.+ .+.+..-.....+.| ..|.+. .+..|+......|+.++|.....++..+.-.. +.. |.
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 444444 333333333322222 123222 22256677788999999999888887743222 222 11
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 006955 546 ILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~ 566 (624)
.-......+|+.+++...+.+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 112223467888888887765
No 341
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.06 E-value=7.6 Score=29.00 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 006955 417 AEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479 (624)
Q Consensus 417 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 479 (624)
.-++.+-++.+....+.|++....+.+++|-+.+++..|.++|+.++.+.+ .+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 334555566666666788888888888888888888888888887775432 2333454443
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.38 E-value=2.5 Score=23.28 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=11.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
+...+...|+++.|...++++++..|
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33334444444444444444444433
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.27 E-value=5.3 Score=34.98 Aligned_cols=77 Identities=14% Similarity=0.070 Sum_probs=58.5
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC--CCCcCHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD--GIEVSPTVWGALL 514 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~ 514 (624)
|.+..++.+.+.+.+++++...+.-.+. +| +...-..++..|+-.|+|++|..-++-.-.. ...+-...|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 4556677788889999999988887764 46 7888889999999999999999877765441 1344566888887
Q ss_pred HHH
Q 006955 515 GAC 517 (624)
Q Consensus 515 ~~~ 517 (624)
.+-
T Consensus 80 r~e 82 (273)
T COG4455 80 RCE 82 (273)
T ss_pred HHH
Confidence 663
No 344
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.22 E-value=11 Score=32.64 Aligned_cols=86 Identities=20% Similarity=0.128 Sum_probs=60.2
Q ss_pred HHHHHcCCChHHHHHHHHhccc-CChh-----HHHHHHHHHHhCCChHHHHHHhccCCCCChhH--HHHHHHHHHHcCCh
Q 006955 121 IGALVNCQRMDLAESYFKEMGA-RDVA-----SWTIMVNGLVREGRIVEARKLFDKMPAKDVQA--WNLMIAGYLDNGCV 192 (624)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~-~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 192 (624)
...+...+++++|...++.... +.-. +-..|.......|.+|.|.++++....++-.. ...-.+.+...|+-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 4556678888888888887764 3222 22344566778888888888888887764333 44456778888888
Q ss_pred hHHHHHHHHcccCC
Q 006955 193 GVAEDLFQKMHDRD 206 (624)
Q Consensus 193 ~~A~~~~~~~~~~~ 206 (624)
++|...|++....+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 88888888877653
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.87 E-value=13 Score=34.32 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
++......|..+|.+.+|.++.++++.++|-+...+-.|+..|...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344455678899999999999999999999999999999999999999777777777664
No 346
>PRK12798 chemotaxis protein; Reviewed
Probab=81.80 E-value=56 Score=32.20 Aligned_cols=179 Identities=17% Similarity=0.220 Sum_probs=112.5
Q ss_pred hCCHHHHHHHhccCC----CCCchhHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHhcccChHH
Q 006955 383 CGNIQSALLEFSSVP----IHDIISWNSIICG-LAYHGYAEKALELFERMRLTDFKPDDI----TFVGVLSACSYAGLVD 453 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~----~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~ 453 (624)
.|+..++.+.+..+. ++....|-.|+.+ .....++.+|+++|+..+- .-|... ....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 578888888888776 3345566677665 4456689999999998876 455543 3444445567889999
Q ss_pred HHHHHHHHhhhhcCCCCCcc-hHHHHHHHhhccC---ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 006955 454 QGRYYFDCMKNKYFLQPRSA-HYTCVVDLLGRFG---LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIA 529 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 529 (624)
++..+-....+++.-.|-.. .+..+...+.+.+ ..+.-..++..|.. .--...|..+.+.-...|+.+.|...
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 98887777777654445222 2233444444443 33344444444431 11244788888888899999999999
Q ss_pred HHHHHccCCCCCchHHHHHHHHH-----hcCChHHHHHHHHHH
Q 006955 530 GERVMELEPNNSGVYLILTEMYL-----SCGRREDAKRIFAQM 567 (624)
Q Consensus 530 ~~~~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m 567 (624)
.+++..+.. ....-...+..|. -..+++++.+.+..+
T Consensus 280 s~~A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 280 SERALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 999998764 3333333444443 234566666655544
No 347
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=80.75 E-value=67 Score=32.40 Aligned_cols=241 Identities=11% Similarity=0.086 Sum_probs=129.0
Q ss_pred HHHHHHHhHHcCCCCCHHHHHHHHHHHcCCC------CcHHHHHHHHHHHHhC-C-CCCcchhHHHHHHhHhhCCHHH-H
Q 006955 319 GLKFFVQMKESGPSPDNATFTSVLTICSDLP------TLDLGRQIHAQAIKIA-R-NQFTTVSNAMITMYARCGNIQS-A 389 (624)
Q Consensus 319 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~-A 389 (624)
...+|++..+. -|+...+...+..|...- .+.....+++...+.+ . +.....|..+.-.++......+ |
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 34566665543 455666666666553321 2334444455444332 2 2234445555555555444333 3
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHc-CChHH-HHHHHHHHHHCCCCCChhhHHHHHHHhcccCh-HHHH--HHHHHHhhh
Q 006955 390 LLEFSSVPIHDIISWNSIICGLAYH-GYAEK-ALELFERMRLTDFKPDDITFVGVLSACSYAGL-VDQG--RYYFDCMKN 464 (624)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a--~~~~~~~~~ 464 (624)
..+....-..+...|-.-++..... .+++- -.+++...+..-..+-...|+... .|+ .+.. ..++.....
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 3333344445555555544444322 12221 122233333321222223333332 111 1111 112222222
Q ss_pred hcCCCCCcchH-HHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHH--HhcCChHHHHHHHHHHHccCCCCC
Q 006955 465 KYFLQPRSAHY-TCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC--RIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 465 ~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
. ..|+..++ +.+.+-+.+.|-..+|.+++..+.... +|+...+..+++.- ...-+..-+..+|+.+......++
T Consensus 454 ~--~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 454 V--IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred h--cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 1 33555444 567888888999999999999988742 45677777777552 233347888888988887555788
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
..|......-...|..+.+-.++-+..+
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 8888887777788888888887776654
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.51 E-value=17 Score=37.20 Aligned_cols=147 Identities=18% Similarity=0.113 Sum_probs=87.8
Q ss_pred hCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHH
Q 006955 383 CGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDC 461 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 461 (624)
.|+++.|-.++..++++ .-+.++..+-..|-.++|+++ .||+ .-|.. ..+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHHh
Confidence 45555555555555422 233444445555555555543 2332 12222 2356778877776554
Q ss_pred hhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 462 MKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 462 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
. .+..-|..|.++....|++..|.+.|.+..+ |..|+-.+...|+.+.-..+-..+.+....|
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N- 725 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKNN- 725 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcccc-
Confidence 3 2456688888888888888888888887764 3456666666777666555555555544433
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
.-..+|...|++++..+++.+
T Consensus 726 ----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 ----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----hHHHHHHHcCCHHHHHHHHHh
Confidence 333456677888888887753
No 349
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.36 E-value=23 Score=36.31 Aligned_cols=126 Identities=12% Similarity=0.113 Sum_probs=65.1
Q ss_pred HcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCC
Q 006955 218 VNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTT 297 (624)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 297 (624)
.-.|+++.|-.++..+.+ ...+.+...+.+.|..++|.++- +|+... .....+.|+++.|.++..+..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-----~D~d~r---Felal~lgrl~iA~~la~e~~- 664 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-----TDPDQR---FELALKLGRLDIAFDLAVEAN- 664 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-----CChhhh---hhhhhhcCcHHHHHHHHHhhc-
Confidence 345566655555544432 23444555556666666665542 222211 122345566666666554332
Q ss_pred CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC
Q 006955 298 RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIA 365 (624)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 365 (624)
+..-|..|..+....+++..|.+.|..... |..|+-.+...|+.+....+-....+.|
T Consensus 665 -s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 665 -SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred -chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 445567777777777777777776655432 3445555555555554444444443333
No 350
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.29 E-value=1.2 Score=36.87 Aligned_cols=84 Identities=11% Similarity=0.150 Sum_probs=49.7
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHH
Q 006955 341 VLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420 (624)
Q Consensus 341 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 420 (624)
++..+.+.+.+.....+++.+...+...+..+.+.++..|++.++.++..++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3455566677777777777777766666677777777777777666666666663332 2223345555555555555
Q ss_pred HHHHHHH
Q 006955 421 LELFERM 427 (624)
Q Consensus 421 ~~~~~~m 427 (624)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555443
No 351
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.92 E-value=8.4 Score=39.04 Aligned_cols=102 Identities=20% Similarity=0.111 Sum_probs=75.6
Q ss_pred cccChHHHHHHHHHHhhhhcCCCC--CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQP--RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIK 524 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 524 (624)
...|+.-.|...+..+.. ..| .......|...+.+.|..-+|-.++.+.+... ...+.++..+.+++....+.+
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhH
Confidence 345788888888877665 334 23344557777778888888888888877653 455677888888888888999
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 525 VGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 525 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
.|++.++.+++..|+++..-..|..+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999988888777765544
No 352
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.87 E-value=5 Score=34.10 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006955 523 IKVGEIAGERVMELEPNNSGVYLILTEMYLSCGR 556 (624)
Q Consensus 523 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 556 (624)
+++|+.-+++++.++|+...++.+++.+|...+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4567777888889999999999999999987654
No 353
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.77 E-value=91 Score=33.37 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=18.4
Q ss_pred hHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHc
Q 006955 308 FGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICS 346 (624)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 346 (624)
..+.-.|+++.|++++-+ ..+...+.+.+.+.+.-+.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~g 302 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYG 302 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcC
Confidence 334456677777766654 2233555555555555443
No 354
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=79.52 E-value=5.4 Score=29.76 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=28.0
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 528 IAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 528 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
..+++.++.+|.|...-..++..+...|++++|.+.+-++.+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34555566677777777777777777777777777776665543
No 355
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.50 E-value=30 Score=32.40 Aligned_cols=103 Identities=16% Similarity=0.059 Sum_probs=51.1
Q ss_pred CCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcC--CCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH
Q 006955 431 DFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF--LQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT 508 (624)
Q Consensus 431 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (624)
|......+...++..-.+..+++.++.++-++..... ..|+...+ ..++.+ -.-+.++++.++..-+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 3333444444444444445555666555555543210 11221111 122222 2234456666666666666666666
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
+.+.++..+.+.+++..|.++.-.++.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666666655554444
No 356
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=79.40 E-value=38 Score=28.76 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=60.5
Q ss_pred cCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCC
Q 006955 142 ARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSR 221 (624)
Q Consensus 142 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (624)
.++...+..+++.+.+.|.+.....++..-.-+|.......+-.+. +....+.++=-+|.++=...+..+++.+...|
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g 103 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKG 103 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhhhhHHHHHHHHHhCC
Confidence 3566677777777777777776666655444333333222222222 12233344434443332234556667777777
Q ss_pred CHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChH
Q 006955 222 RIDAAISYFKQMPETCEKTWNSIISVLIRNGLVK 255 (624)
Q Consensus 222 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 255 (624)
++-+|+++.+.....+......++.+..+.+|..
T Consensus 104 ~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~ 137 (167)
T PF07035_consen 104 QVLEALRYARQYHKVDSVPARKFLEAAANSNDDQ 137 (167)
T ss_pred CHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHH
Confidence 7777777777654444444455555555555543
No 357
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.00 E-value=15 Score=24.10 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 543 VYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.+..++-++.+.|++++|.+..+.+++.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4567888999999999999999999876
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.55 E-value=26 Score=26.46 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=43.7
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV 440 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 440 (624)
+..+...|++++|..+.+....||...|.++-. .+.|-.+++..-+.+|...| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345667888888888888888888888877644 46677777777777777765 55544443
No 359
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=78.50 E-value=13 Score=27.21 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=30.3
Q ss_pred HHHHHcccCCcccHHHHHHHHH---cCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHH
Q 006955 197 DLFQKMHDRDLTSWKQLINGLV---NSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEA 257 (624)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 257 (624)
+++..+.++++.+....-..-. ..|+.+.|.+++..+. ..+..|..++.++...|.-+-|
T Consensus 23 ~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 23 DVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3444444445444433333333 3455566666666655 5555566666666555554433
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.90 E-value=17 Score=35.93 Aligned_cols=121 Identities=18% Similarity=0.175 Sum_probs=66.7
Q ss_pred cCChHHHHH-HHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHH
Q 006955 414 HGYAEKALE-LFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAM 492 (624)
Q Consensus 414 ~~~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 492 (624)
.|+...|-+ ++..++...-.|+.....+. .+...|+++.+.+.+...... +.....+..++++.....|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHH
Confidence 455544433 33334433233443332222 245567777777766665543 3345566666777777777777777
Q ss_pred HHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 493 NLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 493 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
....-|....+ .++.+...........|-++++...|++...++|+
T Consensus 378 s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 77776665432 23333333333344556677777777777776654
No 361
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.83 E-value=32 Score=32.00 Aligned_cols=17 Identities=6% Similarity=0.259 Sum_probs=7.2
Q ss_pred CCchHHHHHHHHHhcCC
Q 006955 540 NSGVYLILTEMYLSCGR 556 (624)
Q Consensus 540 ~~~~~~~l~~~~~~~g~ 556 (624)
|+..+...++.-...|+
T Consensus 237 D~rpW~~FI~li~~sgD 253 (292)
T PF13929_consen 237 DPRPWAEFIKLIVESGD 253 (292)
T ss_pred CCchHHHHHHHHHHcCC
Confidence 33344444444444444
No 362
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.96 E-value=1.2e+02 Score=32.58 Aligned_cols=28 Identities=7% Similarity=0.072 Sum_probs=15.3
Q ss_pred hhHHHHHHHhcc---cChHHHHHHHHHHhhh
Q 006955 437 ITFVGVLSACSY---AGLVDQGRYYFDCMKN 464 (624)
Q Consensus 437 ~~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 464 (624)
..+..++..|.+ ..+..+|.+++--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 445556665543 4567777777766554
No 363
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=75.48 E-value=50 Score=28.07 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=58.3
Q ss_pred CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCC
Q 006955 80 VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREG 159 (624)
Q Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 159 (624)
+++...|..++..+.+.|++..-..++..-.-+|.......+-.+.. ....+.++--.|.++=...+..+++.+...|
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g 103 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGTAYEEIIEVLLSKG 103 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhhhHHHHHHHHHhCC
Confidence 45556666677777777766666666555444444333333322221 1222233222232222224445555666666
Q ss_pred ChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHc
Q 006955 160 RIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKM 202 (624)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 202 (624)
++-+|.+........+......++.+..+.+|...-..+++-+
T Consensus 104 ~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 104 QVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred CHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666665544333333344455555555544444444333
No 364
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.12 E-value=53 Score=32.25 Aligned_cols=99 Identities=10% Similarity=0.055 Sum_probs=67.6
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcc-------cCCC------------------CcCHHHHHHH---HHHHHhcCC
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIR-------ADGI------------------EVSPTVWGAL---LGACRIHNN 522 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~g~------------------~p~~~~~~~l---~~~~~~~g~ 522 (624)
.+.++-.+...+.+.|+.+.|.+++++++ ...+ .-|...|.++ +....+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 45555556666666666665555554431 0011 1133344444 355788999
Q ss_pred hHHHHHHHHHHHccCCC-CCchHHHHHHHHH-hcCChHHHHHHHHHHHH
Q 006955 523 IKVGEIAGERVMELEPN-NSGVYLILTEMYL-SCGRREDAKRIFAQMKE 569 (624)
Q Consensus 523 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 569 (624)
+..|.+..+-+..++|. ||-.....++.|. +.++++--+++.+....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 99999999999999998 8888888888766 77888888888887655
No 365
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.15 E-value=1.4e+02 Score=32.64 Aligned_cols=56 Identities=11% Similarity=-0.045 Sum_probs=33.8
Q ss_pred HHHHHhhccCChHHHHHHHHHcccCCCCc----CHHHHHHHHHH--HHhcCChHHHHHHHHH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEV----SPTVWGALLGA--CRIHNNIKVGEIAGER 532 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 532 (624)
.|+..+...|+.++|...++++......+ +...-...+.. ....||.+.+.....+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 67777788888888888887765543232 22222222222 3457777777666655
No 366
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.13 E-value=1.2e+02 Score=31.95 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=9.1
Q ss_pred ChHHHHHHHHHHHHCC
Q 006955 416 YAEKALELFERMRLTD 431 (624)
Q Consensus 416 ~~~~a~~~~~~m~~~g 431 (624)
+...|.++|....+.|
T Consensus 343 d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAG 358 (552)
T ss_pred cHHHHHHHHHHHHHcC
Confidence 3455666666655555
No 367
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=73.63 E-value=24 Score=30.83 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH-HHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeE
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT-EMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGG 587 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 587 (624)
..+.++..|...||++.|.+.|--+++..+-|....-.++ ..+.+.+.-....+.++.|...-.....-..........
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~~ 122 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRIIA 122 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhccc
Confidence 4566777778888888888888888877666655533333 345555555555466666643211000000111122245
Q ss_pred EEEeeCCCCCcc
Q 006955 588 HVFLSGDSSHPK 599 (624)
Q Consensus 588 ~~~~~~~~~~~~ 599 (624)
..|-+|.+.|..
T Consensus 123 pvfrsGs~t~tp 134 (199)
T PF04090_consen 123 PVFRSGSRTHTP 134 (199)
T ss_pred ccccCCCcccch
Confidence 667778887753
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.03 E-value=6.6 Score=21.36 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..+..++..+...|++++|...+.+..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999877654
No 369
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.73 E-value=24 Score=31.52 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCChHH-------HHHHHHHHHccC--CC----CCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 509 VWGALLGACRIHNNIKV-------GEIAGERVMELE--PN----NSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.+..+.+.|...|+.+. |...|+++.+.. |. .......++....+.|++++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 44555566777777554 444444444422 22 23457788899999999999999999987765
No 370
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.35 E-value=20 Score=28.32 Aligned_cols=58 Identities=26% Similarity=0.220 Sum_probs=44.2
Q ss_pred HHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHH
Q 006955 490 EAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLIL 547 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 547 (624)
+..+.++.+..-.+-|++.+...-+++|.+-+|+..|.++++-+...-+.....|-.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3455666666666889999999999999999999999999998876555333344444
No 371
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.11 E-value=6.6 Score=24.53 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=13.2
Q ss_pred HHHHhhccCChHHHHHHHHHccc
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555556666666666665554
No 372
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.90 E-value=8 Score=21.59 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 521 NNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
|+.+.+..+|++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677777788877777766666666554
No 373
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.84 E-value=12 Score=27.36 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=30.4
Q ss_pred HhccCCCCChhHHHHHHHHHH---HcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHH
Q 006955 167 LFDKMPAKDVQAWNLMIAGYL---DNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAA 226 (624)
Q Consensus 167 ~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (624)
+++.+.+.++.+....=..-+ ..|+.+.|.+++..+. +++..+..++.++...|+-.-|
T Consensus 24 v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 24 VCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 333444444444333333223 3456666666666666 6666666666666665554433
No 374
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.77 E-value=1.1e+02 Score=34.40 Aligned_cols=122 Identities=11% Similarity=-0.014 Sum_probs=71.2
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL 514 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (624)
|..+++.+.+.+..+.+.++-..+.+. ++|+ +.+++.+.+.....|.+-+|.+.+-+..+ ......+++.|+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlv 1061 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHH
Confidence 455666667777777777777766664 3332 34566777777777888777776655443 122334666677
Q ss_pred HHHHhcCChH------------HHHH-HHHHHHccCCCCCch-HHHHHHHHHhcCChHHHHHHH
Q 006955 515 GACRIHNNIK------------VGEI-AGERVMELEPNNSGV-YLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 515 ~~~~~~g~~~------------~a~~-~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~ 564 (624)
...+..|.++ +.+. +++..-+..|....- |..|.-.+...+++.+|..+.
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 6666666553 3333 444444444444333 444444455677777776543
No 375
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=70.69 E-value=3.7 Score=32.45 Aligned_cols=25 Identities=52% Similarity=1.120 Sum_probs=20.2
Q ss_pred ceeEEEEcCeEEEEeeCCCCCcchHHHHH
Q 006955 577 GCSWIQINDGGHVFLSGDSSHPKFHRLRY 605 (624)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (624)
||+|++. +.|.+||.+||+..-++.
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~ 26 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINK 26 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHH
Confidence 6889886 999999999998744444
No 376
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.58 E-value=37 Score=31.30 Aligned_cols=87 Identities=15% Similarity=-0.031 Sum_probs=45.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhh----
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLG---- 483 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 483 (624)
|++++..++|.+++...-+--+.--+.........|-.|.+.|++..+.++-.......+ +-+...|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHHHH
Confidence 556666666666665544433321122223444444456666666666666665554321 112333555555443
Q ss_pred -ccCChHHHHHHH
Q 006955 484 -RFGLIDEAMNLL 495 (624)
Q Consensus 484 -~~g~~~~A~~~~ 495 (624)
-.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 356777776666
No 377
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.56 E-value=4.5 Score=39.90 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=76.0
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhc
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIH 520 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 520 (624)
+......++++.|..++.++++ +.|| ...|..-..++.+.+++..|+.=+..+++ ..|+ ...|..=..+|.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhH
Confidence 4456677899999999999997 5685 44455555788999999999988888876 4454 33555555678888
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHH
Q 006955 521 NNIKVGEIAGERVMELEPNNSGVYLIL 547 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~~~~~~~~l 547 (624)
+.+.+|...++....+.|+++..-.-+
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 999999999999999999776554333
No 378
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.73 E-value=1.5e+02 Score=30.23 Aligned_cols=86 Identities=12% Similarity=0.025 Sum_probs=35.1
Q ss_pred HHHHhHhhCCHHHHHHHhccCC--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHH
Q 006955 376 MITMYARCGNIQSALLEFSSVP--IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVD 453 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 453 (624)
++..++...+++-.+.+..++. ..+-..|..++++|... ..+.-..+|+++.+. .-|...+..-+.-+...++.+
T Consensus 72 ~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEkik~s 148 (711)
T COG1747 72 LLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEKIKKS 148 (711)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHHhchh
Confidence 3344444333333333333333 22333444455555544 334445555555442 223333322222222234445
Q ss_pred HHHHHHHHhhh
Q 006955 454 QGRYYFDCMKN 464 (624)
Q Consensus 454 ~a~~~~~~~~~ 464 (624)
.+..+|.++..
T Consensus 149 k~a~~f~Ka~y 159 (711)
T COG1747 149 KAAEFFGKALY 159 (711)
T ss_pred hHHHHHHHHHH
Confidence 55555554443
No 379
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.42 E-value=52 Score=24.95 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=47.5
Q ss_pred ChHHHHHHHHhcccC-ChhHHHHH--HHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccC
Q 006955 129 RMDLAESYFKEMGAR-DVASWTIM--VNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR 205 (624)
Q Consensus 129 ~~~~a~~~~~~~~~~-~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 205 (624)
..++|..+-+.+... +..-...+ +..+.+.|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.++..+
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 345566655555432 11222223 345778888888888888888888888877765 3556556555555555554
Q ss_pred Cc
Q 006955 206 DL 207 (624)
Q Consensus 206 ~~ 207 (624)
+.
T Consensus 98 g~ 99 (115)
T TIGR02508 98 GD 99 (115)
T ss_pred CC
Confidence 43
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.35 E-value=24 Score=28.47 Aligned_cols=71 Identities=14% Similarity=0.027 Sum_probs=48.2
Q ss_pred CCcchHHHHHHHhhccC---ChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 470 PRSAHYTCVVDLLGRFG---LIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 470 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
++..+--.+.+++.+.. +..+.+.++++..+.. .|+ -....-|.-+|.+.|+++.+.++.+.+++.+|+|+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 45555556777777665 4556677888877522 342 22344455667889999999999999999998553
No 381
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=67.31 E-value=1.8e+02 Score=31.17 Aligned_cols=50 Identities=10% Similarity=0.001 Sum_probs=30.6
Q ss_pred cccChHHHHHHHHHHhhhhcCCCCC-----cchHHH--HHHHhhccCChHHHHHHHH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQPR-----SAHYTC--VVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~--l~~~~~~~g~~~~A~~~~~ 496 (624)
.-.|++..+...++.+.....-.|+ ...+.. ..-.+-..|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3467888888888888764322222 112222 2222345689999999997
No 382
>PRK10941 hypothetical protein; Provisional
Probab=67.16 E-value=22 Score=33.03 Aligned_cols=67 Identities=9% Similarity=-0.085 Sum_probs=53.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV 543 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 543 (624)
.+.+-.+|.+.++++.|+++.+.+.. +.| ++.-+.--.-.|...|.+..|..-++..++..|.+|.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34566678888999999999998887 455 56677777777888999999999999999888877654
No 383
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.03 E-value=1.8e+02 Score=31.09 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhCCCCCc---chhHHHHHHhHhhCCHHHHHHHhccCC-CCCc----------hhHHHHHHHHHHcCCh
Q 006955 352 DLGRQIHAQAIKIARNQFT---TVSNAMITMYARCGNIQSALLEFSSVP-IHDI----------ISWNSIICGLAYHGYA 417 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----------~~~~~l~~~~~~~~~~ 417 (624)
++-..++.+|++.--.|++ .+...++-.|....+++..+++.+.+. -||. ..|.-.++---+.|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 3344556666665444443 333445566667777777777766554 2221 1222222222345677
Q ss_pred HHHHHHHHHHHHC--CCCCChhhH-----HHH--HHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccC-C
Q 006955 418 EKALELFERMRLT--DFKPDDITF-----VGV--LSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFG-L 487 (624)
Q Consensus 418 ~~a~~~~~~m~~~--g~~p~~~~~-----~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~ 487 (624)
++|+.+.-.|.+. .+.||.... .-+ -+.|...+..+.|.+++++.-+ +.|+...--.+.-.+...| .
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhh
Confidence 8888887777663 256776432 221 2245666788889999988765 6675443222222233333 2
Q ss_pred hHHHHHH------HHHccc-CCCCcCHH-H--HHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 488 IDEAMNL------LNEIRA-DGIEVSPT-V--WGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 488 ~~~A~~~------~~~~~~-~g~~p~~~-~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
++.-.++ +..++. .|---... . ....+.+-.-.+|+.+|.+..+++.++.|+.
T Consensus 337 Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 337 FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 2222211 111111 11111111 1 1234455667899999999999999999854
No 384
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.95 E-value=52 Score=28.82 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=21.3
Q ss_pred cCChHHHHHHHHHcccC---CCCcCHHHHHHHHHHHHhcCChHHH
Q 006955 485 FGLIDEAMNLLNEIRAD---GIEVSPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~a 526 (624)
..+.++++.++.+..+. +-.+|+..+.+|+..+...|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34455555555543332 1234555555666665555555554
No 385
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=66.89 E-value=43 Score=31.52 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHccCCCCCchH
Q 006955 524 KVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~~~~ 544 (624)
..|.+...++.+.+|.-|..+
T Consensus 379 ~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHHH
Confidence 356777888888888655443
No 386
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.88 E-value=1e+02 Score=28.01 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=65.3
Q ss_pred HHHhhccCChHHHHHHHHHccc------CCCCcCHHHH-----------HHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRA------DGIEVSPTVW-----------GALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~------~g~~p~~~~~-----------~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
.+-+.+.|++.+|..-|.+++. ..-+|-..-| ...-+++...|++-++++....++...|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 3445566777777666655321 1123432222 2233455678999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.+|..-+++....=+..+|..=|...++.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 99999999998888888888888777664
No 387
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=66.30 E-value=19 Score=33.39 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=39.3
Q ss_pred HhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 518 RIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 518 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
.+.|+.++|..+|+-++.+.|.++.++..++.......+.-+|.+++-+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 46788888888888888888888888888888777777777777777544
No 388
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=65.99 E-value=1.6e+02 Score=30.00 Aligned_cols=64 Identities=8% Similarity=0.071 Sum_probs=35.1
Q ss_pred CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC
Q 006955 299 DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIA 365 (624)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 365 (624)
|-...-+++..+..+-.+.-+..+..+|..- .-+...|..++.+|... ..+.-..+|..+.+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d 128 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYD 128 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc
Confidence 3334455566666666666666666666654 23445555666665555 4445555555555543
No 389
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=65.83 E-value=12 Score=39.50 Aligned_cols=185 Identities=15% Similarity=0.106 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHh
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLL 482 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 482 (624)
.|..-+..+...++.. ...++.+..+-.-.+......++..|.+.|-.+.+.++.+.+-.+. -...-|..-+.-+
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~---~~~~~~g~AL~~~ 448 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL---LKEGRYGEALSWF 448 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHCCCHHHHHHHH
Confidence 3444444443333222 4445555543223344566667777777777777777777655431 1223344444445
Q ss_pred hccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH--HhcCChHHH
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY--LSCGRREDA 560 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A 560 (624)
.++|+......+.+.+.+.....+......++....... -+.+ .-..|..+-+.| ...|++.+|
T Consensus 449 ~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~-------------~~~~-~L~fla~yreF~~~~~~~~~~~A 514 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPM-------------LLSQ-RLSFLAKYREFYELYDEGDFREA 514 (566)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchh-------------hhhh-hhHHHHHHHHHHHHHhhhhHHHH
Confidence 556655555544444443221111111111111111000 0111 112233333322 345888899
Q ss_pred HHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHH
Q 006955 561 KRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLN 608 (624)
Q Consensus 561 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (624)
.+.+-.+.+.+ -.|...|..+-.+.-.++..+...=...+++..+.
T Consensus 515 a~~Lv~Ll~~~--~~Pk~f~~~LL~d~lplL~~~~~~f~~~~~~~ll~ 560 (566)
T PF07575_consen 515 ASLLVSLLKSP--IAPKSFWPLLLCDALPLLESDEVIFSSSDTYELLR 560 (566)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHCCC--CCcHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 88887777654 36666777766555555543322233444444443
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.82 E-value=15 Score=32.21 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=32.5
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 491 AMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
..+..++... ..|++.++..++.++...|+.++|.+..+++....|
T Consensus 130 ~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344444443 567787888777777888888888888888777777
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.38 E-value=26 Score=26.37 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=35.5
Q ss_pred HhcCChHHHHHHHHHHHccCCC----C-----CchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 518 RIHNNIKVGEIAGERVMELEPN----N-----SGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 518 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
...||+..|.+.+.+....... . ......++......|++++|.+.+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4677777777666666652211 1 223456777788889999999998887653
No 392
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.73 E-value=49 Score=33.97 Aligned_cols=132 Identities=16% Similarity=0.090 Sum_probs=91.6
Q ss_pred CCChhhHHHHHHHhccc--ChHHHHHHHHHHhhhhcCCCCCcchHH--HHHHHhhc-cCChHHHHHHHHHcccCCCCcC-
Q 006955 433 KPDDITFVGVLSACSYA--GLVDQGRYYFDCMKNKYFLQPRSAHYT--CVVDLLGR-FGLIDEAMNLLNEIRADGIEVS- 506 (624)
Q Consensus 433 ~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p~- 506 (624)
-|+..+...++.-.... ..-+.+-.++-.|.. |+...|. .+...|.+ .|+...|.+.+..+.. ..|-
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~--~~p~~ 640 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN--LAPLQ 640 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhc--cChhh
Confidence 45555555544433221 233445555555543 3333332 23445554 5899999999988765 3453
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 507 -PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 507 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
......|.+.....|-...|-.++.+.+.+.-..|-++..++++|....+.+.|++-|++..+..
T Consensus 641 ~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 641 QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 34566777777888888899999999999887788999999999999999999999999887653
No 393
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.60 E-value=17 Score=26.06 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=28.7
Q ss_pred hcCChHHHHHHHHHHHccCCCCCc---hHHHHHHHHHhcCChHHHHHHH
Q 006955 519 IHNNIKVGEIAGERVMELEPNNSG---VYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 519 ~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
...+.++|+..++++++..++.+. ++..|+.+|...|++++.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777777775554333 3445556677777777776643
No 394
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=61.12 E-value=1.5e+02 Score=28.02 Aligned_cols=78 Identities=15% Similarity=0.107 Sum_probs=44.3
Q ss_pred HHHHHHHHHcccCCCCcCHHHHHHHHHHH----HhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC---------
Q 006955 489 DEAMNLLNEIRADGIEVSPTVWGALLGAC----RIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG--------- 555 (624)
Q Consensus 489 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 555 (624)
..|...+.++-..| ++.....|...| ....+.++|...|.++.+... +.....+. .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence 35677777766554 223333333333 223467777777777777665 44555555 455444
Q ss_pred ------ChHHHHHHHHHHHHCCC
Q 006955 556 ------RREDAKRIFAQMKENGV 572 (624)
Q Consensus 556 ------~~~~A~~~~~~m~~~~~ 572 (624)
+...|...+......+.
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCC
Confidence 66667777776666553
No 395
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=60.73 E-value=1.7e+02 Score=28.61 Aligned_cols=211 Identities=10% Similarity=0.069 Sum_probs=118.4
Q ss_pred hCCHHHHHHHhccCC---------CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----c
Q 006955 383 CGNIQSALLEFSSVP---------IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY----A 449 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 449 (624)
.++.+.|++-+-... ..+......++..|...++|+.--+.+.-+.+.. .-.......++.-+.. .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkr-gqlk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKR-GQLKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhccCC
Confidence 566666665543332 1133445566777778888877666665554421 1111222333332111 1
Q ss_pred ChHHHHHHHHH---HhhhhcCCCC-C--cchHHHHHHHhhccCChHHHHHHHHHcccCCC-CcCH----HHHHHHHHHHH
Q 006955 450 GLVDQGRYYFD---CMKNKYFLQP-R--SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGI-EVSP----TVWGALLGACR 518 (624)
Q Consensus 450 g~~~~a~~~~~---~~~~~~~~~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~----~~~~~l~~~~~ 518 (624)
.+.+.-..+.+ ...+ +.+-. . ...-..|...+...|+..+|..++.+..-.-+ ..+. ....--++.|.
T Consensus 104 ~d~~~k~~li~tLr~Vte-gkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG 182 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTE-GKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCL 182 (439)
T ss_pred CCchhHHHHHHHHHHhhc-CceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 12222222222 2221 11111 1 22234567778899999999999988652211 1111 11122346688
Q ss_pred hcCChHHHHHHHHHHHcc--CCCCC-----chHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEe
Q 006955 519 IHNNIKVGEIAGERVMEL--EPNNS-----GVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFL 591 (624)
Q Consensus 519 ~~g~~~~a~~~~~~~~~~--~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 591 (624)
..+|+-.|.-+-+++... +.++. ..|..++....+.+.+=.+-+.++..-..|..++....|+....-+..|+
T Consensus 183 ~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 183 LRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 999999999988888762 22122 34777888888999999999999999888766665566776554444454
Q ss_pred eCCC
Q 006955 592 SGDS 595 (624)
Q Consensus 592 ~~~~ 595 (624)
.-.+
T Consensus 263 ~LAp 266 (439)
T KOG1498|consen 263 VLAP 266 (439)
T ss_pred eecC
Confidence 4443
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.60 E-value=19 Score=31.65 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=23.6
Q ss_pred CCCCcchHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 468 LQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 468 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
..|++..|..++..+...|+.++|.++..++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457777777777777777777777777777665
No 397
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=59.97 E-value=2e+02 Score=29.21 Aligned_cols=103 Identities=9% Similarity=0.050 Sum_probs=57.5
Q ss_pred CCChhhH-HHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhh--ccCChHHHHHHHHHcccCCCCcCHHH
Q 006955 433 KPDDITF-VGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLG--RFGLIDEAMNLLNEIRADGIEVSPTV 509 (624)
Q Consensus 433 ~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~g~~p~~~~ 509 (624)
.|+..|+ +.++.-+.+.|-...|+..+..+... -+|+...|..+|..-. ..-+..-+.++++.|... +..|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHH
Confidence 4444443 34455555666666666666666652 1225555555554332 122356666677666544 2356666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHc-cCC
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVME-LEP 538 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p 538 (624)
|...+.--...|..+.+-.++.++++ ++|
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~ 562 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQG 562 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhCh
Confidence 66666665667777776666666665 444
No 398
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.69 E-value=41 Score=31.88 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=73.8
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCC-Cc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGI-EV--SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
|.-=.+-|.+..++..|...|.+.++... .| +...|+.=..+-.-.|++..++.-..+++.++|.+...|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 44445677888999999999999776532 23 2445555555566789999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHH
Q 006955 552 LSCGRREDAKRIFAQM 567 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m 567 (624)
....++.+|....++.
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999988888776654
No 399
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.47 E-value=1.5e+02 Score=27.58 Aligned_cols=133 Identities=13% Similarity=0.104 Sum_probs=72.0
Q ss_pred hhHhhcCCCchHHHHHHHHhHHcCCCCCHHH-------HHHHHHHHcCCCCcHHHHHHHHHHH----HhCCCCCcchhHH
Q 006955 307 IFGLGENDLGEEGLKFFVQMKESGPSPDNAT-------FTSVLTICSDLPTLDLGRQIHAQAI----KIARNQFTTVSNA 375 (624)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ 375 (624)
.....+.+++++|+..|.++...|+..+..+ ...+...|...|+.....+...... ...-+....+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3345667889999999999988888776554 4455666777777655544443322 2222233344455
Q ss_pred HHHHhHhh-CCHHHHHHHhccCCC---C-C-----chhHHHHHHHHHHcCChHHHHHHHH----HHHHCCCCCChhhH
Q 006955 376 MITMYARC-GNIQSALLEFSSVPI---H-D-----IISWNSIICGLAYHGYAEKALELFE----RMRLTDFKPDDITF 439 (624)
Q Consensus 376 l~~~~~~~-g~~~~A~~~~~~~~~---~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~----~m~~~g~~p~~~~~ 439 (624)
|++.+-.. ..++..+.+.....+ + + ...-..++..+.+.|.+.+|+.+.. ++.+..-+|+..+.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 55554432 334555544444331 1 1 0112335566667777777766544 33444445554443
No 400
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.47 E-value=88 Score=25.83 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=25.9
Q ss_pred CchhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 400 DIISWNSIICGLAYHGY-AEKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 400 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
+...|.+++.+.....- --.+..+|.-|++.+.+++..-|..++.++.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 33455566655543333 23345555556555556666666666655544
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.42 E-value=25 Score=25.28 Aligned_cols=44 Identities=11% Similarity=-0.011 Sum_probs=19.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccChHHHHHH
Q 006955 414 HGYAEKALELFERMRLTDFKPDD--ITFVGVLSACSYAGLVDQGRY 457 (624)
Q Consensus 414 ~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~ 457 (624)
.++.++|+..|+...+.-..|.. .++..++.+++..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555443222211 234444445555555444433
No 402
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.30 E-value=75 Score=24.49 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=26.7
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTD 431 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 431 (624)
+..+.+.|++++|+..=.....||...|.++-. .+.|-.+++...+.++...|
T Consensus 47 ~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 47 LSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 334556666666644444444566666655433 45566666666666665543
No 403
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.63 E-value=80 Score=25.39 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=22.6
Q ss_pred HHHHHHHHHHc--cCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 525 VGEIAGERVME--LEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 525 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
.+..+|..+.. +.-.-+..|...+..+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555544 333344556666666666666666666665
No 404
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.54 E-value=1.4e+02 Score=26.72 Aligned_cols=125 Identities=18% Similarity=0.149 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTC 477 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 477 (624)
+.+..++.+.+.+...+++...++-.+. +|.. .+-..++..++-.|++++|..-++-..+ +.|+ ...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHH
Confidence 3445567778888889999888877764 4544 4666777888999999999887776654 4453 455655
Q ss_pred HHHHhhccCChHHHH-HHHHHcccCCC--CcCHHHHHHHHHHH--HhcCChHHHHHHHHHHHccCCC
Q 006955 478 VVDLLGRFGLIDEAM-NLLNEIRADGI--EVSPTVWGALLGAC--RIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 478 l~~~~~~~g~~~~A~-~~~~~~~~~g~--~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+|.+-. +. ++|.--..-|+ .|.+.-...|..+. ...|.-+.+..+-+.+.+..|.
T Consensus 78 lir~ea-------~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~ 137 (273)
T COG4455 78 LIRCEA-------ARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPV 137 (273)
T ss_pred HHHHHH-------HHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCC
Confidence 555321 11 22322221122 13333333444443 3334556666677777776654
No 405
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=57.87 E-value=51 Score=24.22 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=35.3
Q ss_pred HHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChH
Q 006955 198 LFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVK 255 (624)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 255 (624)
++..+.+.++.+....-..-....+.+++.++++.+...++.+|..+.+++...|...
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 4444555555555555455555556667777777776666777777777766665443
No 406
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.50 E-value=39 Score=31.37 Aligned_cols=60 Identities=17% Similarity=-0.000 Sum_probs=43.0
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
++.....|..+|.+.+|.++.++..... +.+...+-.|+..+...||--.+.+.++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455667778888888888888877632 34667777888888888887777776666543
No 407
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.15 E-value=1.1e+02 Score=24.91 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=49.9
Q ss_pred CcCHHHHHHHHHHHHhc---CChHHHHHHHHHHHc-cCCCC-CchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 504 EVSPTVWGALLGACRIH---NNIKVGEIAGERVME-LEPNN-SGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 504 ~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.++..+--.+.++.... .+..+.+.+++.+.+ -.|.. ....+.|+-++.+.|+++++.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 55666666667776554 466778888888887 33432 345777888999999999999999988775
No 408
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.80 E-value=29 Score=34.56 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=72.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH-HHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhcc
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGV-LSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRF 485 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 485 (624)
+..+...++++.|..++.+..+ +.||...|-.. ..++.+.+++..|..=+.++.+ ..| ....|-.=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhH
Confidence 4455667889999999999998 68877655433 3678888999988887777776 335 233333333344455
Q ss_pred CChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh
Q 006955 486 GLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI 519 (624)
Q Consensus 486 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 519 (624)
+++.+|...|+.... +.|+..-....+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 677778888877766 68887777777766643
No 409
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.10 E-value=25 Score=31.27 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=26.1
Q ss_pred hcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 519 IHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 519 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..||.+.+.+++.+++++.|.....|..++..-.+.|+++.|.+.+++..+.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3444455555555555555555555555555555555555555555444443
No 410
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.86 E-value=1.8e+02 Score=27.03 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=17.7
Q ss_pred CcchhHHHHHHhHhhCCHHHHHHHhcc
Q 006955 369 FTTVSNAMITMYARCGNIQSALLEFSS 395 (624)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (624)
++.....+...|.+.|++.+|+..|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 455667777888888888777765543
No 411
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=54.51 E-value=1.6e+02 Score=29.44 Aligned_cols=111 Identities=15% Similarity=0.133 Sum_probs=60.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhcc---CC
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRF---GL 487 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~ 487 (624)
+...|++.+|+..|+.+... ..+.......+.+++.+++....+- +...-++.--+. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrEY--------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICREY--------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccccc
Confidence 35678899999888887642 1222222333455555555443321 111112211111 11
Q ss_pred ---hHHHHHHHHHcccCCCCcCHH--HHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 488 ---IDEAMNLLNEIRADGIEVSPT--VWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 488 ---~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
.....++.--+...++.|... +++..+..+.+.+++..|-.+.++++++.|.
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 223445555555555777544 6677788889999999999999999999984
No 412
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.12 E-value=92 Score=28.87 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=28.1
Q ss_pred hhHhhcCCCchHHHHHHHHhHHc--CCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006955 307 IFGLGENDLGEEGLKFFVQMKES--GPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK 363 (624)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 363 (624)
|.+++..|+|.+++...-+--+. .++|. .....|-.|.+.+.+..+.++-.....
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 56777788888877665443322 23333 222333344555555555444444333
No 413
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.95 E-value=55 Score=26.02 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhh
Q 006955 420 ALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNK 465 (624)
Q Consensus 420 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 465 (624)
..+-+..+..-.+.|++......+++|-+.+++..|.++|+-++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4444555555667888888888888888888888888888877765
No 414
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.82 E-value=2.5e+02 Score=28.43 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=94.8
Q ss_pred HHHcCChHHHHHHHHHHHHC-CCCCChh-------hHHHHHH-HhcccChHHHHHHHHHHhhhhcCCCCC--cchHHHHH
Q 006955 411 LAYHGYAEKALELFERMRLT-DFKPDDI-------TFVGVLS-ACSYAGLVDQGRYYFDCMKNKYFLQPR--SAHYTCVV 479 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~-g~~p~~~-------~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~ 479 (624)
-...|++.+|++-+..|++- .-.|.+. ....++. .|...+.++.|...|....+... .-+ ...-..+.
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~-~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE-SIDLQAFCNLNLA 411 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh-HHHHHHHHHHhHH
Confidence 34578999999999988862 2234421 1223333 45566889999888887766411 112 22233567
Q ss_pred HHhhccCChHHHHHHHHHcccCC-CCcCHHHHH-H--HHHH--HHhcCChHHHHHHHHHHHccCCC------CCchHHHH
Q 006955 480 DLLGRFGLIDEAMNLLNEIRADG-IEVSPTVWG-A--LLGA--CRIHNNIKVGEIAGERVMELEPN------NSGVYLIL 547 (624)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~-~--l~~~--~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l 547 (624)
-.|.+.|+.+.--++++.+-..+ .+.+..... . ++.+ ....+++.+|.....+.++.... ....+..|
T Consensus 412 i~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLL 491 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLL 491 (629)
T ss_pred HHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence 78889998888888877765332 111111111 1 1122 25789999999999998875511 22345566
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 006955 548 TEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~ 566 (624)
+.+....|+..++.+...-
T Consensus 492 s~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 492 SHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred HHHHHHhcchHHHHhccch
Confidence 7777778888888775543
No 415
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=53.57 E-value=1.7e+02 Score=26.41 Aligned_cols=136 Identities=14% Similarity=0.096 Sum_probs=73.6
Q ss_pred HHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHH
Q 006955 376 MITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQG 455 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 455 (624)
-++.|...-++.-|-...+++..|=.. -.+ +--|.+..+..---++.+-....++.-+...+..++ +...|++.+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQS-RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQS-RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHHh-hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 344555555555555555555544111 111 112333333333334444444455555555554444 4567888888
Q ss_pred HHHHHHhhhhcCC-----------CCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHH
Q 006955 456 RYYFDCMKNKYFL-----------QPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC 517 (624)
Q Consensus 456 ~~~~~~~~~~~~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (624)
...++.-...+|+ .|.+.....++.. +..+++++|.+++.++-+.|+.|.. ..+++.+++
T Consensus 212 lNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~-~~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 212 LNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA-CLKRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred HHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH-HHhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 8887776654442 3445555555544 3456788888888888888877754 334444544
No 416
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=52.87 E-value=2.1e+02 Score=27.07 Aligned_cols=117 Identities=15% Similarity=0.028 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc-----
Q 006955 450 GLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH----- 520 (624)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----- 520 (624)
.+...|..++....+. | .+.....|...|.. ..+..+|.++++++.+.|..+-......+...+...
T Consensus 91 ~~~~~A~~~~~~~a~~-g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 91 RDKTKAADWYRCAAAD-G---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred ccHHHHHHHHHHHhhc-c---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence 4466777777755442 1 22333334444443 347888888888888777444322333333333222
Q ss_pred --CChHHHHHHHHHHHccCCCCCchHHHHHHHHHhc----CChHHHHHHHHHHHHCCC
Q 006955 521 --NNIKVGEIAGERVMELEPNNSGVYLILTEMYLSC----GRREDAKRIFAQMKENGV 572 (624)
Q Consensus 521 --g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~ 572 (624)
-+...|...+.++.... ++.....|+..|..- .+.++|...|++..+.|.
T Consensus 167 ~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 13447888888887766 667788888777653 478899999999888874
No 417
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.55 E-value=3.9e+02 Score=29.87 Aligned_cols=164 Identities=18% Similarity=0.142 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC-hhhHHHHHHHhcccChH--HHHHHHHHHhhhhcCCCCC--cchH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTD--FKPD-DITFVGVLSACSYAGLV--DQGRYYFDCMKNKYFLQPR--SAHY 475 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p~-~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~~~p~--~~~~ 475 (624)
-|..|+..|...|+.++|+++|.+....- ..+. ...+..++..+...+.. +-..++-+...... |. ...+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~---p~~gi~If 582 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKN---PEAGIQIF 582 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccC---chhheeee
Confidence 37777888888888888888888776521 0010 11222344444343333 44444444443321 11 1111
Q ss_pred HH------------HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc--------CChHHHHHH--HHHH
Q 006955 476 TC------------VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH--------NNIKVGEIA--GERV 533 (624)
Q Consensus 476 ~~------------l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--------g~~~~a~~~--~~~~ 533 (624)
.. -+-.|......+-++..++.+....-.++....+.++.-|... ++.+++.+. .+++
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl 662 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKL 662 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHH
Confidence 11 2223556667777888888887665556667777777666421 122233333 2222
Q ss_pred Hc-------cCCC-------CCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 534 ME-------LEPN-------NSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 534 ~~-------~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.. ..|. ....|...+..+.+.|+.++|+.++-....
T Consensus 663 ~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 663 LDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 21 2221 245577777788899999999998766544
No 418
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.91 E-value=19 Score=34.08 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=62.6
Q ss_pred ccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH-HHHHHHHHHHhcCChHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT-VWGALLGACRIHNNIKVG 526 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a 526 (624)
..|.++.|++.+...+.. -+|....|..-..++.+.+++..|++=+....+ +.||.. -|-.=..+....|++++|
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 446677777777666653 122455555556666677777777776666655 445422 333333344556777777
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 527 EIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
...++.+.+++- +..+=..|-.+.-+.+..++-...+++.
T Consensus 202 a~dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 202 AHDLALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHH
Confidence 777777776554 3344444444444444444444433333
No 419
>PF13934 ELYS: Nuclear pore complex assembly
Probab=50.63 E-value=1.4e+02 Score=26.95 Aligned_cols=104 Identities=12% Similarity=0.057 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCC-CCCcchHHHHHHHHHcCCChhhHHHHHhcCC
Q 006955 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMP-ERDMFTYNTVIAGLMQSDNVQGAKEVFDGME 79 (624)
Q Consensus 1 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 79 (624)
+..++++.|...+... ...+.--..+++++..+|+...|+..++.+. ..+...-..+.......+.+.+|...-+...
T Consensus 89 LD~~~~~~A~~~L~~p-s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 89 LDHGDFEEALELLSHP-SLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALANGLVTEAFSFQRSYP 167 (226)
T ss_pred hChHhHHHHHHHhCCC-CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCc
Q ss_pred CCC-chhHHHHHHHHH----hCCChhHHHHH
Q 006955 80 VRD-VVTWNSMISGYV----CNGLIDEALRV 105 (624)
Q Consensus 80 ~~~-~~~~~~l~~~~~----~~g~~~~a~~~ 105 (624)
.+. ...+..++..+. +.+..++-..+
T Consensus 168 ~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 168 DELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 420
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.25 E-value=2e+02 Score=26.32 Aligned_cols=165 Identities=10% Similarity=0.004 Sum_probs=82.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc-cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhcc
Q 006955 407 IICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY-AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRF 485 (624)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 485 (624)
++...-+.++++++...++++...+...+..--+.+-.+|-. .|....+.+++..+.....-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 556667788888888888888887666666555544444422 24445555565555543211111 2222233322211
Q ss_pred ------CChHHHHHHHHHccc-CCCCcCHHHHHHHHHH--H---H--hcC-----ChHHHHHHHHHHHc-----cCCCCC
Q 006955 486 ------GLIDEAMNLLNEIRA-DGIEVSPTVWGALLGA--C---R--IHN-----NIKVGEIAGERVME-----LEPNNS 541 (624)
Q Consensus 486 ------g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~--~---~--~~g-----~~~~a~~~~~~~~~-----~~p~~~ 541 (624)
.-..+.+.+++...- ....+...+|-.-+.+ | + ..| -.+.|...|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 122445555555321 1012222233222211 1 1 122 23677777777765 566666
Q ss_pred chHHHHH----HHHHhcCChHHHHHHHHHHHHCCC
Q 006955 542 GVYLILT----EMYLSCGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 542 ~~~~~l~----~~~~~~g~~~~A~~~~~~m~~~~~ 572 (624)
.-+.... ..|.-.|+.++|.++-++..+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5433222 234568999999998888766543
No 421
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.05 E-value=1.3e+02 Score=24.11 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=32.2
Q ss_pred HHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 490 EAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERV 533 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 533 (624)
.+.++|+.|.+.|+.-. +..|......+...|++++|..+++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 78888888877766553 556777777777888888888888765
No 422
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.96 E-value=28 Score=23.73 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=14.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
.-...++.+|...|++++|.++++++.
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334455556666666666666665553
No 423
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=49.83 E-value=27 Score=32.44 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=38.0
Q ss_pred cccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS 506 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 506 (624)
.+.|+.++|..+|+.+.. +.| ++....-+.......+++-+|-++|-+... +.|.
T Consensus 127 ~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--isP~ 182 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALT--ISPG 182 (472)
T ss_pred HhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee--eCCC
Confidence 467888888888888776 456 566666666666666777777777777665 4553
No 424
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.56 E-value=77 Score=26.27 Aligned_cols=62 Identities=10% Similarity=0.082 Sum_probs=40.1
Q ss_pred HHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhC
Q 006955 322 FFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCG 384 (624)
Q Consensus 322 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (624)
+...+.+.|++++..-. .++..+...++.-.|..+++.+.+.+.+.+..+.-.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 44556667777776654 455566666666888888888888777766555444455555554
No 425
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=49.18 E-value=95 Score=22.93 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=37.3
Q ss_pred HHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHH
Q 006955 196 EDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAH 258 (624)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 258 (624)
..++..+.+.++.+....=..-.+....++|..+++.+...++.+|..+.+++...|...-|.
T Consensus 17 ~~ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La~ 79 (86)
T cd08323 17 SYIMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLAL 79 (86)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHHH
Confidence 334555555555554444444445556677777777777777777777777766655544443
No 426
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.11 E-value=37 Score=30.31 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=24.7
Q ss_pred ccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 484 RFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+.++.+.|.+++.+..+ +.| ....|-.+....-+.|+++.|.+.+++.++++|.
T Consensus 7 ~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 7 ESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34444445555554443 223 2334444444444455555555555555554443
No 427
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.68 E-value=30 Score=37.23 Aligned_cols=97 Identities=14% Similarity=0.257 Sum_probs=57.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHH
Q 006955 414 HGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMN 493 (624)
Q Consensus 414 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 493 (624)
..++++.+.+.+...- +. .++|..+.+.|-.+-|+.+.+.-..++ .....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~L----vG----qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNL----VG----QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCc----cc----HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 4556666655544221 11 234444556666666666554333222 22356677777777
Q ss_pred HHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 494 LLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 494 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
..+++- ++.+|..|......+|+.+-|+..|++....+
T Consensus 665 ~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 665 AAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE 702 (1202)
T ss_pred HHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 665543 45677788877778888888877777766544
No 428
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.49 E-value=25 Score=28.29 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=25.5
Q ss_pred HhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHH
Q 006955 309 GLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTI 344 (624)
Q Consensus 309 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 344 (624)
.....|.-..|..+|++|++.|-+||. ++.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345567778899999999999999985 4445543
No 429
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=47.04 E-value=60 Score=19.20 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=6.9
Q ss_pred HHHHHHhcCChHHHHHH
Q 006955 547 LTEMYLSCGRREDAKRI 563 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~ 563 (624)
++-.+...|++++|.++
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33334444444444444
No 430
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=46.99 E-value=32 Score=32.10 Aligned_cols=79 Identities=8% Similarity=0.045 Sum_probs=57.2
Q ss_pred CCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHH-HHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 470 PRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGA-LLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 470 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
-|+..|...+.-..+.|.+.+.-.++.+..... +.+...|-. --.-+...++++.+..++.+.++++|.+|..|....
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 367777777766667788888888888887642 334555532 122346789999999999999999999998877655
Q ss_pred H
Q 006955 549 E 549 (624)
Q Consensus 549 ~ 549 (624)
+
T Consensus 184 r 184 (435)
T COG5191 184 R 184 (435)
T ss_pred H
Confidence 4
No 431
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.97 E-value=42 Score=33.22 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=18.1
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 540 NSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
...+++.++-+|...+++.+|.+.|...+
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665543
No 432
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.87 E-value=75 Score=20.27 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=25.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDDITFVGVLS 444 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 444 (624)
..+.|-..++...+++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3566777788888888888888888777766654
No 433
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.67 E-value=86 Score=31.15 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=16.1
Q ss_pred ceehhhhhhHhhcCCCchHHHHHHHHhH
Q 006955 300 VTVWNVMIFGLGENDLGEEGLKFFVQMK 327 (624)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 327 (624)
+.++--+..+|...+++.+|.+.|....
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666665543
No 434
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=45.58 E-value=98 Score=23.10 Aligned_cols=55 Identities=7% Similarity=0.210 Sum_probs=29.9
Q ss_pred HHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcC
Q 006955 198 LFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNG 252 (624)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 252 (624)
++..+.+.++.+-...-......-+.+++.++++.+...++.+|..+..++...+
T Consensus 25 v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 25 LLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred HHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 3444444444444444444444455566666666666666666666666665444
No 435
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=45.48 E-value=2.4e+02 Score=25.61 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=27.8
Q ss_pred hccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 006955 393 FSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD 436 (624)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 436 (624)
|+-...|.+.....++..|. .+++++|.+++.++-+.|+.|..
T Consensus 231 fKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 231 FKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 33333566666666665543 45678888888888777777755
No 436
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.38 E-value=1e+02 Score=23.32 Aligned_cols=47 Identities=19% Similarity=0.030 Sum_probs=23.6
Q ss_pred HHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 493 NLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 493 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+.+++....+...-|-....|.-.|...|+.+.|.+-|+.-..+.|.
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPE 104 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCcc
Confidence 34444444333222333334444455666666666666666666663
No 437
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=45.07 E-value=3e+02 Score=26.63 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhc---cCChHHH
Q 006955 417 AEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGR---FGLIDEA 491 (624)
Q Consensus 417 ~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~A 491 (624)
.+.-+.++++..+. .|+ ......++..+.+..+.+...+-|+++...+ | +...|...++.... .-.++..
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~---~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN---PGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHhccCcHHHH
Confidence 46678889998886 444 4566778888888888899899999998853 5 67777777776544 3357788
Q ss_pred HHHHHHcccC------CC----Cc----CHHHHHHHHHH---HHhcCChHHHHHHHHHHHccC---CCCCchHHHHHHHH
Q 006955 492 MNLLNEIRAD------GI----EV----SPTVWGALLGA---CRIHNNIKVGEIAGERVMELE---PNNSGVYLILTEMY 551 (624)
Q Consensus 492 ~~~~~~~~~~------g~----~p----~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~ 551 (624)
.++|.+.... |. .+ +......+++. ....|-.+.|..+++-+++++ |.....
T Consensus 122 ~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~-------- 193 (321)
T PF08424_consen 122 RDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSS-------- 193 (321)
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcccccc--------
Confidence 8887765432 21 00 12233333333 357899999999999999955 532211
Q ss_pred HhcCChHHHHHHHHHHHHCCCc
Q 006955 552 LSCGRREDAKRIFAQMKENGVK 573 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~~~~~ 573 (624)
....+..+.|+..=+.+++
T Consensus 194 ---~~~~~~~~~fe~FWeS~vp 212 (321)
T PF08424_consen 194 ---SSFSERLESFEEFWESEVP 212 (321)
T ss_pred ---ccHHHHHHHHHHHhCcCCC
Confidence 1112555666666666654
No 438
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.00 E-value=1.5e+02 Score=25.56 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=12.2
Q ss_pred HHHHhcCChHHHHHHHHHHHc
Q 006955 515 GACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 515 ~~~~~~g~~~~a~~~~~~~~~ 535 (624)
..|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345566666666666665555
No 439
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.98 E-value=4.9e+02 Score=29.14 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=15.5
Q ss_pred hhHHHHHHHhcCChHHHHHHHhhcCC
Q 006955 272 WTNVIVGYFEMGEVGSAIKVFELMTT 297 (624)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 297 (624)
|..|+..|...|+.++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 55566666666666666666655544
No 440
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=44.74 E-value=66 Score=23.63 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=14.9
Q ss_pred CChHHHHHHhccCCCCChhHHHHHHHHHHHcC
Q 006955 159 GRIVEARKLFDKMPAKDVQAWNLMIAGYLDNG 190 (624)
Q Consensus 159 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 190 (624)
-+.+++.++++.+..++..+|..+..++-..|
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 33444444444444444444444444444444
No 441
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.52 E-value=3.2e+02 Score=27.08 Aligned_cols=57 Identities=9% Similarity=0.111 Sum_probs=32.0
Q ss_pred hhHHHHHHHhcCChHHHHHHHhhcCC------CCceehhhhhhHhhcCCCchHHHHHHHHhHH
Q 006955 272 WTNVIVGYFEMGEVGSAIKVFELMTT------RDVTVWNVMIFGLGENDLGEEGLKFFVQMKE 328 (624)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 328 (624)
..-+.+.|..+|+++.|++.+.+... ..+..|-.+|..-.-.|+|..+..+..+...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 33455566667777777777666432 1223444555555556666666666555443
No 442
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=43.91 E-value=82 Score=29.11 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 511 GALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
..+-.++...++++.|....++.+.++|.++.-..--+-+|.+.|.+.-|.+-++...++-
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 3344567889999999999999999999999889999999999999999999888876663
No 443
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=43.62 E-value=3.1e+02 Score=26.52 Aligned_cols=62 Identities=6% Similarity=-0.058 Sum_probs=28.5
Q ss_pred CCcchHHHHHHHHHcCCChhhHHHHHhcCC-CCCchhHHHHHHHHHhCCChhHHHHHhccCCC
Q 006955 50 RDMFTYNTVIAGLMQSDNVQGAKEVFDGME-VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL 111 (624)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 111 (624)
++...-...+.+++..|+......+...+. .++..+-.....++.+.|+......+++.+..
T Consensus 86 ~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~ 148 (335)
T COG1413 86 EDPRVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQD 148 (335)
T ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhcc
Confidence 333333333444444544444444444333 34455555555555555555544444444443
No 444
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.60 E-value=56 Score=25.39 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=26.1
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 541 SGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
..-|..|+..|...|.+++|.+++.++..
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 35688999999999999999999998876
No 445
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.59 E-value=3.1e+02 Score=26.22 Aligned_cols=27 Identities=4% Similarity=-0.120 Sum_probs=14.4
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
.+......|++.|+.+.|.+.+.+..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444455666666666555555443
No 446
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.28 E-value=4.2e+02 Score=27.65 Aligned_cols=106 Identities=18% Similarity=0.054 Sum_probs=63.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh-cccChHHHHHHHHHHhhhhcC--CCCCcchHHHHHHHhhc
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC-SYAGLVDQGRYYFDCMKNKYF--LQPRSAHYTCVVDLLGR 484 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~ 484 (624)
+..+.+.|-+..|+++.+.+.+....-|+.....+|..| .+..+++--+++++....... .-||...-..++..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 456678889999999888888843333556666677755 455677777777776654322 23554444466666666
Q ss_pred cCC---hHHHHHHHHHcccCCCCcCHHHHHHHHHHH
Q 006955 485 FGL---IDEAMNLLNEIRADGIEVSPTVWGALLGAC 517 (624)
Q Consensus 485 ~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (624)
... .+.|...+.++. +.-+.++..|+..+
T Consensus 429 ~~~~~~rqsa~~~l~qAl----~~~P~vl~eLld~~ 460 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQAL----KHHPLVLSELLDEL 460 (665)
T ss_pred cCChhhHHHHHHHHHHHH----HhCcHHHHHHHHhc
Confidence 554 445555555544 22333444555444
No 447
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.75 E-value=57 Score=20.79 Aligned_cols=33 Identities=33% Similarity=0.579 Sum_probs=23.7
Q ss_pred hccCChHHHHHHHHHcccCCCCcCHHHHHHHHH
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEVSPTVWGALLG 515 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (624)
.+.|-..++..++++|.+.|+..++..+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456667777777888877777777777766654
No 448
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.45 E-value=3.3e+02 Score=26.13 Aligned_cols=82 Identities=16% Similarity=-0.038 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhhhcCC---CCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 006955 452 VDQGRYYFDCMKNKYFL---QPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 452 ~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 528 (624)
.+.|.+.|+.......- ..++.....+.....+.|..+....+++.... .+++.....++.+.....+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 56777888877763111 23555556666677777886666666666663 5567778888888888888888888
Q ss_pred HHHHHHcc
Q 006955 529 AGERVMEL 536 (624)
Q Consensus 529 ~~~~~~~~ 536 (624)
+++.+...
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 88888884
No 449
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.98 E-value=1.7e+02 Score=22.74 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRL 429 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 429 (624)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488888888888889999998888876
No 450
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=40.42 E-value=3.7e+02 Score=26.48 Aligned_cols=79 Identities=10% Similarity=-0.026 Sum_probs=42.5
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHH-HhcCChHHHHHHHHHHHccCC-----CCCchHHHHHHHHH
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC-RIHNNIKVGEIAGERVMELEP-----NNSGVYLILTEMYL 552 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~ 552 (624)
+..+.+.|.+..|.++.+-+....-.-||......|..| .+.++++--+.+++....... .-|..-...+-++.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 445567777777777777766633222555555555555 455666656666555433110 12334445555555
Q ss_pred hcCCh
Q 006955 553 SCGRR 557 (624)
Q Consensus 553 ~~g~~ 557 (624)
..++.
T Consensus 190 ~l~~~ 194 (360)
T PF04910_consen 190 RLEKE 194 (360)
T ss_pred HhcCc
Confidence 55555
No 451
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.31 E-value=3e+02 Score=26.08 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=51.8
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhh----------ccCChHH
Q 006955 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLG----------RFGLIDE 490 (624)
Q Consensus 421 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----------~~g~~~~ 490 (624)
.++|+.|...++.|.-..|..+.-.+.+.=.+...+.+|+.+..+ +.-|..|+..|+ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467888888889998888888777788888888888898887753 333555555554 2466666
Q ss_pred HHHHHHHcc
Q 006955 491 AMNLLNEIR 499 (624)
Q Consensus 491 A~~~~~~~~ 499 (624)
.+++++.-.
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 666665533
No 452
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.21 E-value=21 Score=28.66 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=24.5
Q ss_pred ccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHH
Q 006955 484 RFGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC 517 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (624)
..|.-.+|-.+|++|++.|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 45666778999999999998887 567776654
No 453
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.86 E-value=1.1e+02 Score=28.30 Aligned_cols=56 Identities=13% Similarity=-0.082 Sum_probs=30.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCC------CCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 512 ALLGACRIHNNIKVGEIAGERVMELEPN------NSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 512 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
.+...|...|+++.|..+++.+...... ...+...+..++.+.|+.++...+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444456666666666666666432111 2234555666666666666666654444
No 454
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.64 E-value=3.5e+02 Score=25.93 Aligned_cols=146 Identities=12% Similarity=0.022 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHCCC----CCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHH
Q 006955 417 AEKALELFERMRLTDF----KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAM 492 (624)
Q Consensus 417 ~~~a~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 492 (624)
.+.|.+.|++....+. ..++.....++....+.|+.+.-..+++.... .++...-..++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHH
Confidence 3567777777776422 23344445556666677776665555555544 245666677888888888888888
Q ss_pred HHHHHcccCC-CCcCHHHHHHHHHHHHhcCCh--HHHHHHH----HHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 493 NLLNEIRADG-IEVSPTVWGALLGACRIHNNI--KVGEIAG----ERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 493 ~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~--~~a~~~~----~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
++++.....+ +++.. ...++.+....+.. +.+...+ +.+.+..+.+......++..+...-.-++-.+-++
T Consensus 222 ~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 8888777643 33332 23333343322322 4444444 34444544344344555554433333344444444
Q ss_pred HHH
Q 006955 566 QMK 568 (624)
Q Consensus 566 ~m~ 568 (624)
++.
T Consensus 300 ~f~ 302 (324)
T PF11838_consen 300 EFF 302 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 455
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.19 E-value=2e+02 Score=23.08 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=24.3
Q ss_pred HHHHHHHHc--cCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 527 EIAGERVME--LEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 527 ~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
..+|..+.+ +.-.-+..|...+..+...|++.+|.++++
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555544 333345557777777777777777777765
No 456
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=38.92 E-value=3.6e+02 Score=25.94 Aligned_cols=118 Identities=12% Similarity=0.104 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhc------ccChHHHHHHHHHHhhhhcCCCCCcc-hHHHHHHHhhccCChH
Q 006955 417 AEKALELFERMRLTDFKPDDITFVGVLSACS------YAGLVDQGRYYFDCMKNKYFLQPRSA-HYTCVVDLLGRFGLID 489 (624)
Q Consensus 417 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~------~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~ 489 (624)
++++..++.+....+ .|.+......|.++- ..-+|..-..+++.+.. +.|++. +.|-- -+..+..-.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRA-VAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRA-VALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHH-HHHHHhhhHH
Confidence 567788888877776 488877777766542 23467777777777765 456544 34433 3344444567
Q ss_pred HHHHHHHHcccCCCCcCHHHH-HHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 490 EAMNLLNEIRADGIEVSPTVW-GALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
.++.+.+-+.+.+---+...| ..=...+.+.|..++|...|++++.+.++
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 777777777665311122222 22334467889999999999999988874
No 457
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.69 E-value=76 Score=18.27 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=14.1
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHH
Q 006955 522 NIKVGEIAGERVMELEPNNSGVYLIL 547 (624)
Q Consensus 522 ~~~~a~~~~~~~~~~~p~~~~~~~~l 547 (624)
.++.|..+|++.+...| ++..+...
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 34566666666666655 45554443
No 458
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=38.21 E-value=3.2e+02 Score=26.27 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=66.7
Q ss_pred CCCchhHHHHHHHHH------HcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC
Q 006955 398 IHDIISWNSIICGLA------YHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP 470 (624)
Q Consensus 398 ~~~~~~~~~l~~~~~------~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 470 (624)
.|.+......|.++- ..-+|.....+|+-+.. +.|+++ +.|..+ +.....-.+.+....+.+..+..+.-
T Consensus 287 ~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAV-Ala~~~Gp~agLa~ve~L~~~~~L~g 363 (415)
T COG4941 287 RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAV-ALAMREGPAAGLAMVEALLARPRLDG 363 (415)
T ss_pred CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHH-HHHHhhhHHhHHHHHHHhhccccccc
Confidence 455555555555432 23467888888888877 566653 555433 23444456777777777776533332
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT 508 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (624)
-...+..-...+.+.|+.++|..-|++... +.++..
T Consensus 364 y~~~h~~RadlL~rLgr~~eAr~aydrAi~--La~~~a 399 (415)
T COG4941 364 YHLYHAARADLLARLGRVEEARAAYDRAIA--LARNAA 399 (415)
T ss_pred ccccHHHHHHHHHHhCChHHHHHHHHHHHH--hcCChH
Confidence 333344567778899999999999999887 444443
No 459
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.16 E-value=58 Score=22.20 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=10.8
Q ss_pred HHHHHhhccCChHHHHHHHHHcc
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~ 499 (624)
.+|.+|...|++++|.+.++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555544443
No 460
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.90 E-value=3.1e+02 Score=24.89 Aligned_cols=18 Identities=0% Similarity=-0.031 Sum_probs=9.6
Q ss_pred cccChHHHHHHHHHHhhh
Q 006955 447 SYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~ 464 (624)
+..+++++|+.+|+++..
T Consensus 165 a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555544
No 461
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=37.55 E-value=2.4e+02 Score=23.39 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=41.6
Q ss_pred CceehhhhhhHhhcCCC-chHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHH
Q 006955 299 DVTVWNVMIFGLGENDL-GEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDL 353 (624)
Q Consensus 299 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 353 (624)
+...|+.++.+..+... ---+..+|.-|++.+.+++..-|..++.+|.+....+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 55678888888866555 33477888888888889999999999998877644443
No 462
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.57 E-value=2e+02 Score=22.30 Aligned_cols=76 Identities=18% Similarity=0.139 Sum_probs=40.9
Q ss_pred CChhhHHHHHhcCC-CCCc--hhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc
Q 006955 66 DNVQGAKEVFDGME-VRDV--VTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA 142 (624)
Q Consensus 66 ~~~~~A~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (624)
...++|..+.+.+. .++. .+--+-+..+...|+|.+|+..=.....||..+|..|- -.+.|-.+++...+.++..
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 34566666666554 2222 22233344566778888885444444456776665443 3567777777777776654
Q ss_pred C
Q 006955 143 R 143 (624)
Q Consensus 143 ~ 143 (624)
.
T Consensus 98 ~ 98 (116)
T PF09477_consen 98 S 98 (116)
T ss_dssp -
T ss_pred C
Confidence 3
No 463
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=36.14 E-value=4.1e+02 Score=25.70 Aligned_cols=143 Identities=8% Similarity=-0.007 Sum_probs=67.6
Q ss_pred CCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCC-CCCcccHHHHHHHHHcCC
Q 006955 50 RDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMP-LKDVVSWNLVIGALVNCQ 128 (624)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~ 128 (624)
++..........++..+..+....+.+.+..++..+-..-+.+....|.......+...+. .++..+......++.+.+
T Consensus 55 ~~~~vr~~aa~~l~~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 55 EDLLVRLSAAVALGELGSEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred CCHHHHHHHHHHHhhhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 3444444444444444443333333333334444444444445555665555555555444 366666666666666666
Q ss_pred ChHHHHHHHHhcccCCh------------hHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCh
Q 006955 129 RMDLAESYFKEMGARDV------------ASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCV 192 (624)
Q Consensus 129 ~~~~a~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 192 (624)
+......+++.+...+. ......+..+...|+...-..+.+....++..+....+.+.++.+..
T Consensus 135 ~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 135 DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 66666566555554331 12333334444444444333333333333444444444444444444
No 464
>PRK09857 putative transposase; Provisional
Probab=35.55 E-value=1.8e+02 Score=27.59 Aligned_cols=65 Identities=18% Similarity=0.102 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCcc
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKK 574 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 574 (624)
+..++......|+.++-.++++.+.+..|........++.-+.+.|.-+++.++..+|+..|+..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 34444444556777667777777766666666677788888888888888999999999998753
No 465
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.31 E-value=4e+02 Score=25.35 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=31.6
Q ss_pred HHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006955 320 LKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK 363 (624)
Q Consensus 320 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 363 (624)
.++|+.|.+.++.|.-..|..+.-.+.+.=.+..+..+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 45677777778888877777666666666667777777776655
No 466
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.27 E-value=79 Score=29.69 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGV 442 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 442 (624)
-|+..|..-.+.||+++|+.++++..+.|+.--..+|...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678888888999999999999999988876655565443
No 467
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.24 E-value=4.2e+02 Score=26.34 Aligned_cols=53 Identities=8% Similarity=-0.009 Sum_probs=31.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHhcc--cChHHHHHHHHHHhhh
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDDI--TFVGVLSACSY--AGLVDQGRYYFDCMKN 464 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~--~g~~~~a~~~~~~~~~ 464 (624)
+...+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44677788888888887775 455444 33333344332 3456677777776554
No 468
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.02 E-value=1.3e+02 Score=25.67 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=28.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCh
Q 006955 406 SIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGL 451 (624)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 451 (624)
.++..+...++.-.|.++++.+.+.+..++..|....|..+...|-
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3444444455566777777777777666666666555565555543
No 469
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=33.53 E-value=62 Score=22.71 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=18.4
Q ss_pred ChhhHHHHHhcCC---CCCchhHHHHHHHHHhC
Q 006955 67 NVQGAKEVFDGME---VRDVVTWNSMISGYVCN 96 (624)
Q Consensus 67 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 96 (624)
+.+.|..++..+. ++++..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 4555666666655 45666777776666555
No 470
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.47 E-value=6.1e+02 Score=26.95 Aligned_cols=59 Identities=10% Similarity=0.096 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC
Q 006955 334 DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP 397 (624)
Q Consensus 334 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (624)
....|..++..+. .-+.+....++.++.. .. ......++++....|-......+.+.+.
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i~ 367 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWIK 367 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3344555554443 3344555555555433 11 3445556666666666665555555444
No 471
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=33.14 E-value=4.9e+02 Score=25.71 Aligned_cols=58 Identities=12% Similarity=0.049 Sum_probs=36.2
Q ss_pred HHhcccChHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHhhccCChHHHHHHHHHcccC
Q 006955 444 SACSYAGLVDQGRYYFDCMKNKYFLQPR-----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD 501 (624)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (624)
+.|...+++-.|.-+-+++..++--.|+ ...|+.++......+.+=.+-+.++.....
T Consensus 179 rKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 179 RLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 3456667777776666666554322333 334677777777777777777777776543
No 472
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=32.95 E-value=1.3e+02 Score=22.37 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=11.4
Q ss_pred hHHHHHHhccCCCCChhHHHHHHHHH
Q 006955 161 IVEARKLFDKMPAKDVQAWNLMIAGY 186 (624)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~~l~~~~ 186 (624)
.+++.++++.+..+++.+|..++.++
T Consensus 50 ~~k~~~Lld~L~~RG~~AF~~F~~aL 75 (90)
T cd08332 50 FSQNVALLNLLPKRGPRAFSAFCEAL 75 (90)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 34444444444444444444444444
No 473
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.84 E-value=4.6e+02 Score=25.31 Aligned_cols=82 Identities=9% Similarity=0.047 Sum_probs=62.4
Q ss_pred hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh---cCChHHHHHHH
Q 006955 488 IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLS---CGRREDAKRIF 564 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~ 564 (624)
.+.-+.+++++++.+ +-+...+..++..+.+..+.+...+.+++++...|.++..+...+..... .-.+++...+|
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 456677888877762 34567778888888888899999999999999999888888877776554 34577888777
Q ss_pred HHHHHC
Q 006955 565 AQMKEN 570 (624)
Q Consensus 565 ~~m~~~ 570 (624)
.+..+.
T Consensus 126 ~~~l~~ 131 (321)
T PF08424_consen 126 EKCLRA 131 (321)
T ss_pred HHHHHH
Confidence 776543
No 474
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=32.64 E-value=4.3e+02 Score=24.91 Aligned_cols=128 Identities=8% Similarity=0.082 Sum_probs=76.5
Q ss_pred HHHHHHHhccCC-----CCCchhHHHHHHHHHH-cC-ChHHHHHHHHHHHH-CCCCCChhhHHHHHHHhcccChHHHHHH
Q 006955 386 IQSALLEFSSVP-----IHDIISWNSIICGLAY-HG-YAEKALELFERMRL-TDFKPDDITFVGVLSACSYAGLVDQGRY 457 (624)
Q Consensus 386 ~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 457 (624)
+.+|+.+|+... -.|..+-..+++.... .+ ....-.++.+-+.. .|-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 455666666322 2244445555555443 21 22233333333333 2456777777788888888888888888
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHc-----ccCCCCcCHHHHHHH
Q 006955 458 YFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEI-----RADGIEVSPTVWGAL 513 (624)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~g~~p~~~~~~~l 513 (624)
+++......+..-|...|..+|+.....|+..-..++.++- ...|+..++..-..|
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 88876653222337778888888888888888777777762 334455554444333
No 475
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.55 E-value=1.7e+02 Score=24.29 Aligned_cols=46 Identities=22% Similarity=0.047 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC
Q 006955 405 NSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAG 450 (624)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 450 (624)
..++..+...++.-.|.++++++.+.+...+..|....+..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3455666666666778888888887766666666555555555544
No 476
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=32.23 E-value=4e+02 Score=24.37 Aligned_cols=83 Identities=7% Similarity=-0.089 Sum_probs=44.7
Q ss_pred ccChHHHHHHHHHHhhhhcCCCCCc-chHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHH-HHHHhcCChHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQPRS-AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL-GACRIHNNIKV 525 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~-~~~~~~g~~~~ 525 (624)
....++.|+..+.+... +.|++ ..|+.=+..+.+..+|+.+..--.+.++ +.|+..--..++ .+......+++
T Consensus 22 ~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred chhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 33445555555555444 44644 3444555556666666666665555554 555544333333 33345566666
Q ss_pred HHHHHHHHHc
Q 006955 526 GEIAGERVME 535 (624)
Q Consensus 526 a~~~~~~~~~ 535 (624)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666643
No 477
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.84 E-value=1.5e+02 Score=22.19 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=17.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccC
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
+.......|++++|...+++++++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3344566788888888888777643
No 478
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.59 E-value=4.3e+02 Score=24.58 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=46.4
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHH-HHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL-ILTE 549 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~ 549 (624)
++.....+...|.+.|++.+|...|-... .|+...+..++..+...|. |.....|. ..+-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~---------------~~e~dlfi~RaVL 149 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGY---------------PSEADLFIARAVL 149 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTS---------------S--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcC---------------CcchhHHHHHHHH
Confidence 56777778888888888888877664332 3333333233333333333 33333333 2333
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 006955 550 MYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 550 ~~~~~g~~~~A~~~~~~m~~~ 570 (624)
-|...|+...|...++...+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 477789999999988888765
No 479
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=31.50 E-value=5.4e+02 Score=25.68 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=36.4
Q ss_pred CceehhhhhhHhhc---CCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCC
Q 006955 299 DVTVWNVMIFGLGE---NDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPT 350 (624)
Q Consensus 299 ~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 350 (624)
+-..+..+++++.+ -.+.+.|+-++-+|.+.|-.|-...-..+.-+....|.
T Consensus 245 ~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGl 299 (436)
T COG2256 245 DGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGL 299 (436)
T ss_pred CcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC
Confidence 44555566777654 47888999999999999877766665556656655554
No 480
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.48 E-value=1.8e+02 Score=31.16 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=10.0
Q ss_pred HHHHhcCChHHHHHHHHH
Q 006955 549 EMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 549 ~~~~~~g~~~~A~~~~~~ 566 (624)
..+.+.|..++-.++|+-
T Consensus 352 ~LlgrKG~leklq~YWdV 369 (1226)
T KOG4279|consen 352 SLLGRKGALEKLQEYWDV 369 (1226)
T ss_pred HHhhccchHHHHHHHHhH
Confidence 345555666666665553
No 481
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.38 E-value=95 Score=24.32 Aligned_cols=46 Identities=28% Similarity=0.171 Sum_probs=34.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChH
Q 006955 407 IICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLV 452 (624)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 452 (624)
++..+...+..-.|.++++.+.+.+..++..|....+..+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555666667778899999998887777877777777777666643
No 482
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=31.36 E-value=8.1e+02 Score=28.02 Aligned_cols=21 Identities=29% Similarity=0.167 Sum_probs=11.2
Q ss_pred HHHHHhcCChHHHHHHHhhcC
Q 006955 245 ISVLIRNGLVKEAHSYLEKYP 265 (624)
Q Consensus 245 l~~~~~~~~~~~a~~~~~~~~ 265 (624)
++.+...+++.+|..+.++-+
T Consensus 701 ir~~Ld~~~Y~~Af~~~RkhR 721 (928)
T PF04762_consen 701 IRKLLDAKDYKEAFELCRKHR 721 (928)
T ss_pred HHHHHhhccHHHHHHHHHHhc
Confidence 344455566666665555443
No 483
>PRK09462 fur ferric uptake regulator; Provisional
Probab=31.22 E-value=2.4e+02 Score=23.36 Aligned_cols=59 Identities=8% Similarity=0.144 Sum_probs=35.4
Q ss_pred HhHHcCCCCCHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhC
Q 006955 325 QMKESGPSPDNATFTSVLTICSD-LPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCG 384 (624)
Q Consensus 325 ~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (624)
.+.+.|++++..-.. ++..+.. .+..-.|.++++.+.+.+...+..+.-.-+..+...|
T Consensus 7 ~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 7 ALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 345667777665543 3333333 3456678888888887776666555544555555555
No 484
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.11 E-value=6.4e+02 Score=26.44 Aligned_cols=93 Identities=14% Similarity=0.028 Sum_probs=61.7
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCC--CcchHHHHHHHhh-ccCChHHHHHHHHHcccC---CCCcCHHHHHHHHHH
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQP--RSAHYTCVVDLLG-RFGLIDEAMNLLNEIRAD---GIEVSPTVWGALLGA 516 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~ 516 (624)
+..+.+.|-+..|.++-+-+.. +.| |+.....+|+.|+ ++.+++--++++++.... ..-|+...=.+|...
T Consensus 349 m~~l~~RGC~rTA~E~cKllls---Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f 425 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLS---LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARF 425 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhh---cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHH
Confidence 4456778899999998887776 566 5777778888885 677888888888776432 234554433445555
Q ss_pred HHhcCC---hHHHHHHHHHHHccCC
Q 006955 517 CRIHNN---IKVGEIAGERVMELEP 538 (624)
Q Consensus 517 ~~~~g~---~~~a~~~~~~~~~~~p 538 (624)
|..... -+.|...+.++....|
T Consensus 426 ~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 426 FLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHhcCChhhHHHHHHHHHHHHHhCc
Confidence 544433 4566666666666444
No 485
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=31.11 E-value=1.4e+02 Score=22.09 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=15.5
Q ss_pred CChhHHHHHHHHcccCCcccHHHHHHHHHcCC
Q 006955 190 GCVGVAEDLFQKMHDRDLTSWKQLINGLVNSR 221 (624)
Q Consensus 190 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (624)
...++|..+++.+..+|..+|..+..++...|
T Consensus 42 t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 42 TQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34445555555555555555555544444433
No 486
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.59 E-value=5e+02 Score=28.78 Aligned_cols=132 Identities=14% Similarity=0.139 Sum_probs=85.9
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGR 456 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 456 (624)
......+|+++.|++.-.++- +..+|..|...-.+.|+.+-|+..|++.+. |..|--.|.-.|+.++-.
T Consensus 650 F~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 344567888888888776665 455799999999999999999999888654 223333466678888877
Q ss_pred HHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 457 YYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 457 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
+..+.+..+ -|...- + ..-.-.|+.++-.+++...-. .|- .|. ....+|.-++|.++.++.-.
T Consensus 719 Km~~iae~r----~D~~~~--~-qnalYl~dv~ervkIl~n~g~---~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEIR----NDATGQ--F-QNALYLGDVKERVKILENGGQ---LPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHhh----hhhHHH--H-HHHHHhccHHHHHHHHHhcCc---ccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 766655543 122111 1 111235788888888876552 221 111 12367888899988888766
No 487
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.38 E-value=1.8e+02 Score=22.09 Aligned_cols=45 Identities=24% Similarity=0.200 Sum_probs=33.8
Q ss_pred HHHHHHHHHHccC-CCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 525 VGEIAGERVMELE-PNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 525 ~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.-++.++++...+ |..|....+|+-.|.+.|+.+.|..-|+.=+.
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 3345566665533 55788899999999999999999998875443
No 488
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=30.36 E-value=3.7e+02 Score=23.51 Aligned_cols=169 Identities=12% Similarity=0.062 Sum_probs=0.0
Q ss_pred CcccHHHHHHHHHcCCCHHHHHHHhhhCCC------------CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhh
Q 006955 206 DLTSWKQLINGLVNSRRIDAAISYFKQMPE------------TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWT 273 (624)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (624)
+...++.++..+.+..-..+-+..+-.+.. .|......-+..|-..||+.+.-.+ |.
T Consensus 7 ~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~l-----------y~ 75 (233)
T PF14669_consen 7 DPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNL-----------YI 75 (233)
T ss_pred CHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhH-----------Hh
Q ss_pred HHHHHHHhcCChHH-----HHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCC
Q 006955 274 NVIVGYFEMGEVGS-----AIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDL 348 (624)
Q Consensus 274 ~l~~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 348 (624)
++-.++-+.++++. |..+.++..++-...|-....+-++.-+.+++.+ .+=...-.+++..|.+.
T Consensus 76 nv~~gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK----------~~LGRiGiS~m~~Yhk~ 145 (233)
T PF14669_consen 76 NVKMGCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDK----------TLLGRIGISLMYSYHKT 145 (233)
T ss_pred hHHhhcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhh----------hhhhHHHHHHHHHHHHH
Q ss_pred CCcHHHHHHHHHHHH--------------hCCCCCcchhHHHHHHhHhhCCHHHHHHHhcc
Q 006955 349 PTLDLGRQIHAQAIK--------------IARNQFTTVSNAMITMYARCGNIQSALLEFSS 395 (624)
Q Consensus 349 ~~~~~a~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (624)
.++.+++.++..+.+ .+..+.-.+.|.....+.+.|.++.|+.++++
T Consensus 146 ~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 146 LQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 489
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.26 E-value=2.2e+02 Score=24.61 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=12.2
Q ss_pred HhcccChHHHHHHHHHHhhh
Q 006955 445 ACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~ 464 (624)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 46666666666666666554
No 490
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.12 E-value=72 Score=29.97 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=26.7
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHH
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFT 339 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 339 (624)
-|+..|....+.|+.++|+.++++..+.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 35677777777777777777777777777665555553
No 491
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=29.90 E-value=2e+02 Score=21.14 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=34.2
Q ss_pred HHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcC
Q 006955 198 LFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNG 252 (624)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 252 (624)
++..+.+.++.+....-.......+.++|..+++.+. .++.+|..++.++...+
T Consensus 21 l~d~L~s~~ILt~~d~EeI~~~~t~~~qa~~LLdiL~-rGp~Af~~F~esL~~~~ 74 (84)
T cd08810 21 HFDYLRSKRILTRDDCEEISCRTTSRKQAGKLLDILA-ENPKGLDALIESIRRER 74 (84)
T ss_pred HHHHHHHcCCCCHHHHHHHhccCCcHHHHHHHHHHHh-hCchHHHHHHHHHHHcc
Confidence 5555555555555555555556666777777777776 77777777777665544
No 492
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=29.50 E-value=2.7e+02 Score=21.83 Aligned_cols=41 Identities=17% Similarity=0.068 Sum_probs=24.1
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 525 VGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 525 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
.+.+.+.+...+.|..+..+..|+.-+....-++++..--+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak 102 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAK 102 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45566777777888665556666555444444555544433
No 493
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=29.48 E-value=1.3e+02 Score=28.38 Aligned_cols=69 Identities=9% Similarity=0.086 Sum_probs=55.8
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHH-HHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 503 IEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLI-LTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 503 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+..|+..|...+....+.|.+.+...++.+++...|.|...|.. -..-|...++++.+..++..-.+.+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 45678888888877788889999999999999999999988766 4556778899999998887554443
No 494
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=29.35 E-value=1.9e+02 Score=20.80 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=23.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCC
Q 006955 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDN 67 (624)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 67 (624)
+|+..-...+..+.+.|+.+-.-.+.+.+..+|+.+-...+.++++.|+
T Consensus 12 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~ 60 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIGD 60 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 4444444555555555433333333333334555555555555555554
No 495
>PF15469 Sec5: Exocyst complex component Sec5
Probab=28.78 E-value=3.8e+02 Score=23.14 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=7.6
Q ss_pred hcccChHHHHHHHHHHhh
Q 006955 446 CSYAGLVDQGRYYFDCMK 463 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~ 463 (624)
|...|+++.+...+.++.
T Consensus 96 ~i~~~dy~~~i~dY~kak 113 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAK 113 (182)
T ss_pred HHHcCcHHHHHHHHHHHH
Confidence 334444444444444433
No 496
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=28.60 E-value=4.5e+02 Score=23.87 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=11.9
Q ss_pred cCChHHHHHHHHHHHccCC
Q 006955 520 HNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p 538 (624)
.++...|..+++++.+++|
T Consensus 191 ~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 191 AETLQLALALLQRAFQLND 209 (230)
T ss_pred cccHHHHHHHHHHHHHhCC
Confidence 3455666666666666666
No 497
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=27.94 E-value=3.9e+02 Score=22.99 Aligned_cols=79 Identities=15% Similarity=0.083 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccC-ChHHHHHHHHH
Q 006955 419 KALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFG-LIDEAMNLLNE 497 (624)
Q Consensus 419 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 497 (624)
.-..+.+++.+.| .+..+....+..+......+.|..++.+-....+..|+..-...+...+.+.| .++.+..++..
T Consensus 86 G~~rl~qeL~qkG--i~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~ 163 (174)
T COG2137 86 GPARLKQELKQKG--IDDEIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNE 163 (174)
T ss_pred ChHHHHHHHHHcC--CCHHHHHHHHhccchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4456777888887 34455556666566666677777776665554334455554555555555666 45555556655
Q ss_pred cc
Q 006955 498 IR 499 (624)
Q Consensus 498 ~~ 499 (624)
+.
T Consensus 164 ~~ 165 (174)
T COG2137 164 AE 165 (174)
T ss_pred hh
Confidence 54
No 498
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.57 E-value=8.9e+02 Score=26.96 Aligned_cols=299 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHH
Q 006955 118 NLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAED 197 (624)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 197 (624)
..+-+.|...|++++|.++-+.-...-..++..-+..|...+++..|.+++.++ ...+....--+....+.+.-..
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~~L~~ 437 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQERALRT 437 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHHHHHH
Q ss_pred HHHHcccC-------------CcccHHHHHHHHHcCCCHHHHHHHhhhCCC-------------CCcchHHHHHHHHHhc
Q 006955 198 LFQKMHDR-------------DLTSWKQLINGLVNSRRIDAAISYFKQMPE-------------TCEKTWNSIISVLIRN 251 (624)
Q Consensus 198 ~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~~~~~~~ll~~~~~~ 251 (624)
++.+=.++ ...+...|.+.=.-....+++.+-++.-.+ .+.....++-..+...
T Consensus 438 ~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~ 517 (911)
T KOG2034|consen 438 FLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASH 517 (911)
T ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHc
Q ss_pred CChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCC
Q 006955 252 GLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGP 331 (624)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 331 (624)
|+.+....+-.-+ ..+..++..++..+.+++|++++..- .+....-...-.+...- +.+....+..+.....
T Consensus 518 ~~~e~ll~fA~l~-----~d~~~vv~~~~q~e~yeeaLevL~~~--~~~el~yk~ap~Li~~~-p~~tV~~wm~~~d~~~ 589 (911)
T KOG2034|consen 518 GRQEELLQFANLI-----KDYEFVVSYWIQQENYEEALEVLLNQ--RNPELFYKYAPELITHS-PKETVSAWMAQKDLDP 589 (911)
T ss_pred cCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhc--cchhhHHHhhhHHHhcC-cHHHHHHHHHccccCc
Q ss_pred CCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHH--HHHhccCCCCCchhHHHHHH
Q 006955 332 SPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA--LLEFSSVPIHDIISWNSIIC 409 (624)
Q Consensus 332 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~~~~~~~~~~l~~ 409 (624)
+--..+...+...-........+..+++.....-...++.++|.++..|++..+-+.- .+....+......-....+.
T Consensus 590 ~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~~~YDl~~alR 669 (911)
T KOG2034|consen 590 NRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSRVHYDLDYALR 669 (911)
T ss_pred hhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhccccceecHHHHHH
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 006955 410 GLAYHGYAEKALELFERMR 428 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~ 428 (624)
.|.+.+.-..+..++..|.
T Consensus 670 lc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 670 LCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred HHHHhCccceeeeHHHHHH
No 499
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.24 E-value=5.3e+02 Score=24.23 Aligned_cols=158 Identities=9% Similarity=0.047 Sum_probs=90.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChh-------hHHHHHHHhcccChHHHHHHHHHHh---hhhcCCCC-CcchHHHH
Q 006955 410 GLAYHGYAEKALELFERMRLTDFKPDDI-------TFVGVLSACSYAGLVDQGRYYFDCM---KNKYFLQP-RSAHYTCV 478 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l 478 (624)
-..+.+++++|+..+.+....|+..+.. +...+...|...|+...-.++.... .... -.| ......+|
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f-tk~k~~KiirtL 90 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF-TKPKITKIIRTL 90 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh-cchhHHHHHHHH
Confidence 3456678888888888888888776654 3445566677777655443333322 2221 112 34445555
Q ss_pred HHHhhc-cCChHHHHHHHHHcccCCCCcCHH-----HHHHHHHHHHhcCChHHHHHHHHHHHc----cC--CCCCchHHH
Q 006955 479 VDLLGR-FGLIDEAMNLLNEIRADGIEVSPT-----VWGALLGACRIHNNIKVGEIAGERVME----LE--PNNSGVYLI 546 (624)
Q Consensus 479 ~~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~ 546 (624)
++.+-. ...++.-++++...++-..+.... .=.-++..+.+.|.+..|..+..-+.. .+ |.-...+..
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhll 170 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLL 170 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhh
Confidence 555532 345666666665554321111111 123456667888999999877655442 22 333445556
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 006955 547 LTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
=.++|....+..++..-+-..+
T Consensus 171 ESKvyh~irnv~KskaSLTaAr 192 (421)
T COG5159 171 ESKVYHEIRNVSKSKASLTAAR 192 (421)
T ss_pred hHHHHHHHHhhhhhhhHHHHHH
Confidence 6677877777777776665554
No 500
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.07 E-value=1.3e+02 Score=27.76 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=29.0
Q ss_pred HHHHHhhccCChHHHHHHHHHcc----cCCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIR----ADGI-EVSPTVWGALLGACRIHNNIKVGEIAGERV 533 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~----~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 533 (624)
.+...|.+.|++++|.++|+.+. +.|. .+...+...+..++...|+.+....+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34555555666666666655542 1222 123344455555556666666655544433
Done!