Query 006955
Match_columns 624
No_of_seqs 508 out of 3195
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 13:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-39 6.2E-44 344.6 34.4 473 62-570 63-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9.2E-40 3.2E-44 346.8 28.9 459 93-571 63-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-26 5E-31 231.2 33.6 364 186-556 9-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 9.5E-26 3.3E-30 225.2 32.4 349 213-570 5-368 (388)
5 4g26_A Pentatricopeptide repea 99.9 1E-26 3.4E-31 235.7 18.6 186 302-519 28-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 4.3E-26 1.5E-30 231.1 19.4 179 270-448 27-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.4E-23 8.2E-28 216.2 26.3 418 146-571 7-479 (514)
8 3fp2_A TPR repeat-containing p 99.9 1.5E-22 5E-27 211.6 29.6 415 114-570 25-491 (537)
9 2gw1_A Mitochondrial precursor 99.9 8.5E-23 2.9E-27 212.1 25.5 428 115-547 7-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 5.6E-22 1.9E-26 207.2 29.7 428 82-545 24-500 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 4.8E-22 1.6E-26 202.7 26.5 355 240-619 28-443 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 3.3E-21 1.1E-25 196.4 28.1 358 175-560 25-444 (450)
13 1xi4_A Clathrin heavy chain; a 99.9 4.9E-17 1.7E-21 174.4 46.2 412 113-565 984-1440(1630)
14 1xi4_A Clathrin heavy chain; a 99.8 1E-16 3.4E-21 172.0 47.4 374 19-421 983-1375(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 1.9E-18 6.5E-23 170.1 27.3 302 238-570 3-335 (359)
16 1b89_A Protein (clathrin heavy 99.8 1.7E-19 5.8E-24 173.8 18.6 279 2-295 15-308 (449)
17 3ieg_A DNAJ homolog subfamily 99.8 1.6E-18 5.6E-23 170.5 25.3 318 207-554 3-353 (359)
18 3hym_B Cell division cycle pro 99.8 6.3E-18 2.2E-22 164.3 24.4 288 267-558 20-322 (330)
19 1b89_A Protein (clathrin heavy 99.8 1.8E-17 6.3E-22 159.7 25.2 276 32-322 14-304 (449)
20 1fch_A Peroxisomal targeting s 99.8 3.2E-18 1.1E-22 169.3 19.2 293 250-566 37-355 (368)
21 2xm6_A Protein corresponding t 99.8 1.6E-16 5.5E-21 163.2 30.9 365 143-553 37-452 (490)
22 3hym_B Cell division cycle pro 99.8 2.1E-17 7.2E-22 160.6 22.3 267 298-570 20-299 (330)
23 2ooe_A Cleavage stimulation fa 99.8 5.3E-16 1.8E-20 161.1 33.5 401 144-571 12-493 (530)
24 3mkr_A Coatomer subunit epsilo 99.8 1.6E-16 5.5E-21 150.3 25.7 243 306-564 40-288 (291)
25 2xm6_A Protein corresponding t 99.8 1.6E-15 5.4E-20 155.8 32.4 351 174-572 37-434 (490)
26 3mkr_A Coatomer subunit epsilo 99.7 5.1E-16 1.8E-20 146.9 25.1 248 308-571 7-265 (291)
27 1fch_A Peroxisomal targeting s 99.7 3.9E-17 1.3E-21 161.4 18.0 289 280-619 36-348 (368)
28 4eqf_A PEX5-related protein; a 99.7 3.7E-17 1.3E-21 161.4 16.6 268 269-566 65-352 (365)
29 4g1t_A Interferon-induced prot 99.7 3.5E-16 1.2E-20 160.2 24.4 366 175-581 50-470 (472)
30 3cv0_A Peroxisome targeting si 99.7 1.6E-16 5.6E-21 154.0 18.4 273 270-567 22-312 (327)
31 2ooe_A Cleavage stimulation fa 99.7 6.4E-15 2.2E-19 152.9 29.4 402 113-539 12-495 (530)
32 4eqf_A PEX5-related protein; a 99.7 3.7E-16 1.3E-20 154.2 18.4 236 300-571 65-311 (365)
33 4g1t_A Interferon-induced prot 99.7 1.3E-15 4.6E-20 155.9 22.0 374 144-548 50-471 (472)
34 2pl2_A Hypothetical conserved 99.7 6.8E-16 2.3E-20 139.5 15.9 195 367-568 2-212 (217)
35 3cv0_A Peroxisome targeting si 99.7 2.3E-15 7.9E-20 145.9 17.9 272 237-538 20-317 (327)
36 3uq3_A Heat shock protein STI1 99.7 5.9E-15 2E-19 137.5 19.7 217 340-571 10-237 (258)
37 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.3E-14 7.8E-19 135.0 18.2 247 307-564 12-269 (275)
38 3uq3_A Heat shock protein STI1 99.6 1.2E-14 4.3E-19 135.3 15.0 233 303-549 8-255 (258)
39 3spa_A Mtrpol, DNA-directed RN 99.6 7.2E-16 2.5E-20 160.5 6.8 149 402-555 128-286 (1134)
40 3spa_A Mtrpol, DNA-directed RN 99.6 5.2E-16 1.8E-20 161.6 5.4 147 269-415 127-286 (1134)
41 3u4t_A TPR repeat-containing p 99.6 2.8E-14 9.6E-19 134.2 16.1 176 374-554 78-268 (272)
42 3e4b_A ALGK; tetratricopeptide 99.6 5.8E-14 2E-18 141.9 18.3 379 120-570 9-421 (452)
43 2ho1_A Type 4 fimbrial biogene 99.5 2.6E-13 8.8E-18 125.9 19.1 196 373-571 40-239 (252)
44 3e4b_A ALGK; tetratricopeptide 99.5 4E-13 1.4E-17 135.7 21.5 343 212-572 8-389 (452)
45 2vq2_A PILW, putative fimbrial 99.5 3.9E-13 1.3E-17 122.2 18.1 197 372-571 10-212 (225)
46 2q7f_A YRRB protein; TPR, prot 99.5 1.5E-13 5.1E-18 126.7 15.0 198 370-571 23-223 (243)
47 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.9E-14 1.7E-18 132.7 11.7 229 2-230 17-269 (275)
48 2ho1_A Type 4 fimbrial biogene 99.5 1.1E-12 3.7E-17 121.6 20.1 197 344-545 46-247 (252)
49 1ouv_A Conserved hypothetical 99.5 3.6E-12 1.2E-16 119.7 23.3 178 383-572 55-253 (273)
50 2q7f_A YRRB protein; TPR, prot 99.5 2E-13 6.7E-18 125.9 14.0 220 299-555 22-241 (243)
51 3u4t_A TPR repeat-containing p 99.5 1.4E-12 4.9E-17 122.4 20.0 222 343-571 11-251 (272)
52 3vtx_A MAMA; tetratricopeptide 99.5 1.1E-12 3.6E-17 115.1 17.6 166 400-571 4-171 (184)
53 2h6f_A Protein farnesyltransfe 99.5 8.5E-13 2.9E-17 129.0 18.6 244 301-553 98-365 (382)
54 2vq2_A PILW, putative fimbrial 99.5 2.2E-12 7.6E-17 117.1 18.9 204 339-547 12-222 (225)
55 1ouv_A Conserved hypothetical 99.5 5.4E-12 1.8E-16 118.6 21.1 221 303-539 9-254 (273)
56 4a1s_A PINS, partner of inscut 99.5 2.1E-13 7.2E-18 136.7 12.1 199 372-570 128-372 (411)
57 4abn_A Tetratricopeptide repea 99.5 3.3E-13 1.1E-17 137.2 13.3 183 376-565 108-316 (474)
58 2h6f_A Protein farnesyltransfe 99.5 1E-12 3.5E-17 128.4 16.2 230 332-570 93-348 (382)
59 2pl2_A Hypothetical conserved 99.5 1.1E-12 3.8E-17 118.3 15.2 111 415-532 98-210 (217)
60 3ro2_A PINS homolog, G-protein 99.4 6.2E-13 2.1E-17 129.0 13.1 234 338-571 46-333 (338)
61 3sf4_A G-protein-signaling mod 99.4 6.7E-13 2.3E-17 132.7 13.6 271 272-569 12-335 (406)
62 3vtx_A MAMA; tetratricopeptide 99.4 3.1E-12 1E-16 112.2 13.7 166 369-540 4-174 (184)
63 3sf4_A G-protein-signaling mod 99.4 7.7E-13 2.6E-17 132.3 8.7 293 238-558 9-364 (406)
64 4gyw_A UDP-N-acetylglucosamine 99.4 6E-12 2E-16 133.0 15.7 163 400-569 8-173 (723)
65 2ond_A Cleavage stimulation fa 99.4 7.5E-11 2.6E-15 112.7 21.2 221 317-542 33-276 (308)
66 4a1s_A PINS, partner of inscut 99.3 1.3E-12 4.4E-17 131.0 9.0 202 337-538 128-374 (411)
67 3as5_A MAMA; tetratricopeptide 99.3 3.7E-11 1.3E-15 105.1 16.0 165 403-571 10-174 (186)
68 3ulq_A Response regulator aspa 99.3 7.7E-12 2.7E-16 123.9 12.5 227 343-570 111-368 (383)
69 3nf1_A KLC 1, kinesin light ch 99.3 1.7E-12 5.8E-17 124.5 7.1 246 301-570 28-307 (311)
70 2ond_A Cleavage stimulation fa 99.3 1.1E-10 3.6E-15 111.7 19.1 213 352-572 33-272 (308)
71 3ro2_A PINS homolog, G-protein 99.3 7.2E-12 2.5E-16 121.4 10.2 237 303-539 46-335 (338)
72 4i17_A Hypothetical protein; T 99.3 4.8E-11 1.6E-15 108.6 14.8 165 402-571 8-210 (228)
73 4abn_A Tetratricopeptide repea 99.3 4.7E-11 1.6E-15 121.3 15.8 180 386-571 84-288 (474)
74 4i17_A Hypothetical protein; T 99.3 1.2E-10 4.2E-15 105.8 16.7 206 333-551 5-224 (228)
75 3as5_A MAMA; tetratricopeptide 99.3 2E-10 6.8E-15 100.4 16.9 168 372-543 10-180 (186)
76 1hz4_A MALT regulatory protein 99.2 1.1E-09 3.7E-14 108.0 23.6 197 374-570 97-322 (373)
77 3ulq_A Response regulator aspa 99.2 4.8E-11 1.6E-15 118.2 13.8 228 308-538 111-370 (383)
78 4e6h_A MRNA 3'-END-processing 99.2 2.4E-09 8.2E-14 111.8 26.7 122 144-265 65-221 (679)
79 4e6h_A MRNA 3'-END-processing 99.2 7.5E-09 2.6E-13 108.0 29.9 220 318-541 327-575 (679)
80 3nf1_A KLC 1, kinesin light ch 99.2 1.2E-11 4.2E-16 118.4 6.9 247 268-539 26-310 (311)
81 3q15_A PSP28, response regulat 99.2 2.5E-10 8.7E-15 112.7 13.7 225 344-569 110-364 (378)
82 3qky_A Outer membrane assembly 99.1 9.8E-10 3.3E-14 102.2 16.2 188 403-617 17-248 (261)
83 3mv2_B Coatomer subunit epsilo 99.1 4E-09 1.4E-13 97.5 19.2 176 389-571 85-283 (310)
84 4gyw_A UDP-N-acetylglucosamine 99.1 2.6E-10 9E-15 120.5 12.1 162 370-538 9-176 (723)
85 3q15_A PSP28, response regulat 99.1 2.3E-09 8E-14 105.7 17.7 226 309-537 110-366 (378)
86 4ga2_A E3 SUMO-protein ligase 99.1 9.3E-11 3.2E-15 98.4 6.0 140 410-556 6-149 (150)
87 3edt_B KLC 2, kinesin light ch 99.1 6.9E-10 2.4E-14 104.4 12.7 225 346-570 12-281 (283)
88 2pzi_A Probable serine/threoni 99.1 5.9E-10 2E-14 118.5 12.8 147 401-555 433-582 (681)
89 2fo7_A Synthetic consensus TPR 99.1 2E-09 6.9E-14 88.2 13.4 129 439-570 4-132 (136)
90 2yhc_A BAMD, UPF0169 lipoprote 99.1 5.3E-09 1.8E-13 94.6 16.6 62 512-573 152-216 (225)
91 3qky_A Outer membrane assembly 99.0 2.1E-09 7.3E-14 99.9 13.5 181 371-558 16-249 (261)
92 1qqe_A Vesicular transport pro 99.0 2.7E-09 9.4E-14 100.9 14.3 131 403-540 119-273 (292)
93 1qqe_A Vesicular transport pro 99.0 9.6E-10 3.3E-14 104.0 11.1 200 350-567 32-266 (292)
94 3mv2_B Coatomer subunit epsilo 99.0 6.4E-09 2.2E-13 96.2 15.2 184 354-545 85-291 (310)
95 3edt_B KLC 2, kinesin light ch 99.0 8.5E-10 2.9E-14 103.8 9.3 227 310-537 11-282 (283)
96 4ga2_A E3 SUMO-protein ligase 99.0 1.1E-09 3.7E-14 91.8 8.6 124 442-570 3-129 (150)
97 3qou_A Protein YBBN; thioredox 99.0 6.8E-09 2.3E-13 97.7 14.6 178 386-569 102-283 (287)
98 3rjv_A Putative SEL1 repeat pr 99.0 3.2E-08 1.1E-12 88.4 18.2 164 399-571 16-198 (212)
99 1hz4_A MALT regulatory protein 99.0 2.9E-08 9.8E-13 97.7 19.3 197 374-570 57-282 (373)
100 2fo7_A Synthetic consensus TPR 99.0 1.4E-08 4.8E-13 83.0 14.3 133 403-539 3-135 (136)
101 3gyz_A Chaperone protein IPGC; 99.0 4.2E-09 1.4E-13 87.8 10.9 102 468-571 31-134 (151)
102 2r5s_A Uncharacterized protein 99.0 5.9E-09 2E-13 90.2 12.1 159 404-569 9-172 (176)
103 3urz_A Uncharacterized protein 98.9 1E-08 3.5E-13 91.4 12.3 122 442-569 60-185 (208)
104 2vsy_A XCC0866; transferase, g 98.9 1.1E-08 3.8E-13 106.8 14.3 160 383-548 2-169 (568)
105 3urz_A Uncharacterized protein 98.9 1.5E-08 5.2E-13 90.3 12.6 127 406-539 59-189 (208)
106 4gco_A Protein STI-1; structur 98.9 7.4E-09 2.5E-13 83.6 9.4 108 438-549 15-123 (126)
107 2vgx_A Chaperone SYCD; alterna 98.9 5.6E-09 1.9E-13 87.2 8.6 103 468-571 16-119 (148)
108 2ifu_A Gamma-SNAP; membrane fu 98.9 2.4E-08 8.4E-13 95.1 13.8 159 402-563 77-254 (307)
109 4gco_A Protein STI-1; structur 98.9 1.2E-08 4E-13 82.4 9.8 103 468-571 8-111 (126)
110 2r5s_A Uncharacterized protein 98.8 2E-08 7E-13 86.7 11.4 156 373-535 9-172 (176)
111 2vsy_A XCC0866; transferase, g 98.8 3.1E-08 1.1E-12 103.4 14.7 146 349-500 3-156 (568)
112 2e2e_A Formate-dependent nitri 98.8 3.5E-08 1.2E-12 85.4 12.0 122 446-571 20-145 (177)
113 2xcb_A PCRH, regulatory protei 98.8 3.7E-08 1.3E-12 81.6 11.5 103 468-571 13-116 (142)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.8 7.5E-08 2.6E-12 86.1 14.3 131 403-540 8-154 (213)
115 2pzi_A Probable serine/threoni 98.8 6.4E-08 2.2E-12 102.9 15.8 189 346-542 402-608 (681)
116 3u3w_A Transcriptional activat 98.8 3.1E-07 1.1E-11 86.7 18.7 164 406-569 80-265 (293)
117 2ifu_A Gamma-SNAP; membrane fu 98.8 3.7E-08 1.3E-12 93.8 11.2 174 383-568 29-222 (307)
118 3qou_A Protein YBBN; thioredox 98.8 8.1E-08 2.8E-12 90.3 13.4 132 435-571 116-249 (287)
119 1a17_A Serine/threonine protei 98.7 7.6E-08 2.6E-12 82.1 11.9 128 438-569 15-145 (166)
120 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.1E-07 7.3E-12 84.0 15.5 159 377-542 11-219 (225)
121 2qfc_A PLCR protein; TPR, HTH, 98.7 2.8E-07 9.7E-12 87.0 16.1 167 403-569 77-265 (293)
122 2lni_A Stress-induced-phosphop 98.7 8.7E-08 3E-12 78.1 10.4 116 437-556 17-133 (133)
123 2kck_A TPR repeat; tetratricop 98.7 1.2E-07 4.1E-12 74.5 10.6 100 471-571 5-107 (112)
124 3dra_A Protein farnesyltransfe 98.7 2E-06 6.8E-11 80.4 20.3 219 312-569 44-286 (306)
125 3rjv_A Putative SEL1 repeat pr 98.7 9.7E-07 3.3E-11 78.7 17.3 160 370-538 18-199 (212)
126 1na0_A Designed protein CTPR3; 98.7 1.9E-07 6.5E-12 74.9 11.6 116 437-555 10-125 (125)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.7E-07 2E-11 80.3 15.6 123 374-500 10-149 (213)
128 2c2l_A CHIP, carboxy terminus 98.7 3E-08 1E-12 93.0 7.3 187 372-569 6-198 (281)
129 2vyi_A SGTA protein; chaperone 98.7 1.6E-07 5.6E-12 76.1 10.8 117 437-557 13-130 (131)
130 1p5q_A FKBP52, FK506-binding p 98.6 1.1E-07 3.7E-12 91.6 11.0 161 384-568 127-292 (336)
131 3upv_A Heat shock protein STI1 98.6 1.4E-07 4.8E-12 76.1 10.1 99 472-571 4-102 (126)
132 3gyz_A Chaperone protein IPGC; 98.6 1.6E-07 5.4E-12 78.1 10.3 104 432-540 31-137 (151)
133 3dra_A Protein farnesyltransfe 98.6 6.3E-06 2.1E-10 77.1 21.9 239 277-549 40-301 (306)
134 2vgx_A Chaperone SYCD; alterna 98.6 1.1E-07 3.7E-12 79.3 8.0 115 424-545 10-127 (148)
135 1hxi_A PEX5, peroxisome target 98.6 1.6E-07 5.5E-12 75.0 7.9 97 473-571 18-115 (121)
136 3gw4_A Uncharacterized protein 98.5 3.5E-07 1.2E-11 80.9 10.6 156 413-569 4-175 (203)
137 3q49_B STIP1 homology and U bo 98.5 5.1E-07 1.7E-11 74.0 10.9 100 471-571 8-107 (137)
138 2uy1_A Cleavage stimulation fa 98.5 2E-06 7E-11 87.1 16.9 354 188-569 6-412 (493)
139 2uy1_A Cleavage stimulation fa 98.5 6.2E-06 2.1E-10 83.5 20.3 201 318-535 197-412 (493)
140 3sz7_A HSC70 cochaperone (SGT) 98.5 4E-07 1.4E-11 77.4 9.9 107 437-548 12-120 (164)
141 4gcn_A Protein STI-1; structur 98.5 4.6E-07 1.6E-11 73.1 9.4 97 472-570 8-112 (127)
142 2e2e_A Formate-dependent nitri 98.5 5.3E-07 1.8E-11 77.8 10.3 128 412-544 21-152 (177)
143 2xcb_A PCRH, regulatory protei 98.5 3.3E-07 1.1E-11 75.8 8.5 106 438-547 20-126 (142)
144 2lni_A Stress-induced-phosphop 98.5 8.3E-07 2.9E-11 72.1 10.9 100 471-571 15-114 (133)
145 1elw_A TPR1-domain of HOP; HOP 98.5 8.5E-07 2.9E-11 70.2 10.6 109 438-550 6-115 (118)
146 3u3w_A Transcriptional activat 98.5 5.2E-06 1.8E-10 78.3 17.8 161 376-536 81-266 (293)
147 3upv_A Heat shock protein STI1 98.5 5.8E-07 2E-11 72.5 9.5 109 438-551 6-122 (126)
148 2fbn_A 70 kDa peptidylprolyl i 98.5 5E-07 1.7E-11 79.6 9.8 171 379-571 13-187 (198)
149 1elw_A TPR1-domain of HOP; HOP 98.5 8E-07 2.7E-11 70.3 10.2 99 472-571 4-102 (118)
150 4f3v_A ESX-1 secretion system 98.5 7.6E-07 2.6E-11 81.2 10.7 124 442-571 108-238 (282)
151 1na0_A Designed protein CTPR3; 98.5 1E-06 3.5E-11 70.5 10.5 99 472-571 9-107 (125)
152 3sz7_A HSC70 cochaperone (SGT) 98.5 1.1E-06 3.6E-11 74.8 10.7 94 473-568 12-106 (164)
153 2qfc_A PLCR protein; TPR, HTH, 98.4 2.5E-06 8.4E-11 80.5 14.1 163 374-536 79-266 (293)
154 4gcn_A Protein STI-1; structur 98.4 6.2E-07 2.1E-11 72.3 8.5 101 439-545 11-120 (127)
155 2xev_A YBGF; tetratricopeptide 98.4 1.1E-06 3.7E-11 71.1 9.9 92 477-570 7-105 (129)
156 2dba_A Smooth muscle cell asso 98.4 2.1E-06 7.1E-11 71.3 11.9 109 438-550 30-142 (148)
157 3rkv_A Putative peptidylprolyl 98.4 1.8E-06 6.1E-11 73.2 11.5 97 474-570 13-126 (162)
158 2dba_A Smooth muscle cell asso 98.4 1.9E-06 6.4E-11 71.6 11.4 99 471-571 27-129 (148)
159 3k9i_A BH0479 protein; putativ 98.4 3.4E-07 1.2E-11 72.7 5.3 86 485-570 3-90 (117)
160 2vyi_A SGTA protein; chaperone 98.4 1.4E-06 4.8E-11 70.4 9.2 100 471-571 11-110 (131)
161 3q49_B STIP1 homology and U bo 98.4 1.3E-06 4.5E-11 71.5 9.1 101 435-539 8-109 (137)
162 2hr2_A Hypothetical protein; a 98.4 1.4E-06 4.9E-11 71.5 8.9 91 478-570 17-131 (159)
163 4f3v_A ESX-1 secretion system 98.4 2.8E-06 9.6E-11 77.5 11.7 139 404-547 105-247 (282)
164 1a17_A Serine/threonine protei 98.4 4.2E-06 1.4E-10 71.0 12.4 129 402-535 14-145 (166)
165 2fbn_A 70 kDa peptidylprolyl i 98.3 8.5E-07 2.9E-11 78.1 7.8 121 447-570 15-151 (198)
166 1wao_1 Serine/threonine protei 98.3 9.2E-07 3.2E-11 89.4 8.5 119 443-566 13-135 (477)
167 2kck_A TPR repeat; tetratricop 98.3 4E-06 1.4E-10 65.4 10.4 101 437-541 7-111 (112)
168 3gw4_A Uncharacterized protein 98.3 2.1E-06 7.2E-11 75.8 9.3 156 382-537 4-177 (203)
169 1hxi_A PEX5, peroxisome target 98.3 2.1E-06 7E-11 68.5 8.3 98 439-541 20-119 (121)
170 1elr_A TPR2A-domain of HOP; HO 98.3 2.2E-06 7.6E-11 69.2 8.3 99 472-571 4-109 (131)
171 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.6E-06 1.2E-10 84.7 11.1 163 384-569 248-414 (457)
172 1p5q_A FKBP52, FK506-binding p 98.3 5.6E-06 1.9E-10 79.6 11.9 142 369-534 146-292 (336)
173 3ro3_A PINS homolog, G-protein 98.3 2.3E-06 7.9E-11 72.1 8.3 132 439-570 12-158 (164)
174 2if4_A ATFKBP42; FKBP-like, al 98.3 1.8E-06 6.2E-11 83.1 8.4 148 402-571 180-329 (338)
175 2xev_A YBGF; tetratricopeptide 98.2 7.8E-06 2.7E-10 65.9 10.9 104 441-549 7-118 (129)
176 1elr_A TPR2A-domain of HOP; HO 98.2 3.3E-06 1.1E-10 68.2 8.4 112 438-552 6-123 (131)
177 3q7a_A Farnesyltransferase alp 98.2 7.7E-05 2.6E-09 70.5 18.3 181 385-570 104-331 (349)
178 2c2l_A CHIP, carboxy terminus 98.2 6.6E-06 2.3E-10 76.9 11.0 113 435-552 3-117 (281)
179 3k9i_A BH0479 protein; putativ 98.2 1.1E-06 3.9E-11 69.6 4.7 96 448-544 2-98 (117)
180 3q7a_A Farnesyltransferase alp 98.2 0.00025 8.5E-09 67.0 20.3 229 313-548 67-344 (349)
181 3rkv_A Putative peptidylprolyl 98.1 2.9E-06 1E-10 71.8 6.5 78 471-550 62-141 (162)
182 1ihg_A Cyclophilin 40; ppiase 98.1 8.2E-06 2.8E-10 79.4 10.1 136 403-562 225-362 (370)
183 3dss_A Geranylgeranyl transfer 98.1 0.00029 1E-08 66.2 20.0 180 386-571 90-305 (331)
184 2hr2_A Hypothetical protein; a 98.1 4.4E-06 1.5E-10 68.6 6.5 76 473-548 58-143 (159)
185 4b4t_Q 26S proteasome regulato 98.1 2.7E-05 9.2E-10 78.0 13.6 167 403-569 57-244 (434)
186 3dss_A Geranylgeranyl transfer 98.0 0.00021 7.2E-09 67.2 17.3 193 352-551 91-319 (331)
187 2l6j_A TPR repeat-containing p 98.0 5.8E-06 2E-10 64.6 5.7 94 471-565 3-102 (111)
188 1wao_1 Serine/threonine protei 98.0 1.6E-05 5.6E-10 80.3 10.1 115 377-496 13-134 (477)
189 2kat_A Uncharacterized protein 98.0 1.6E-05 5.4E-10 62.6 7.9 80 490-570 3-82 (115)
190 1ihg_A Cyclophilin 40; ppiase 98.0 3.5E-05 1.2E-09 74.9 11.7 97 475-571 226-337 (370)
191 3lvg_A Clathrin heavy chain 1; 98.0 5.1E-07 1.8E-11 86.1 -1.3 256 19-289 52-324 (624)
192 1dce_A Protein (RAB geranylger 98.0 9.5E-05 3.3E-09 76.1 15.3 168 386-559 45-244 (567)
193 2if4_A ATFKBP42; FKBP-like, al 98.0 9.5E-06 3.2E-10 78.0 7.4 150 372-541 181-333 (338)
194 3ma5_A Tetratricopeptide repea 98.0 3.4E-05 1.2E-09 58.8 8.8 65 506-570 6-70 (100)
195 1na3_A Designed protein CTPR2; 98.0 2.6E-05 9E-10 58.1 8.0 84 471-555 8-91 (91)
196 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 3.4E-05 1.1E-09 77.6 11.1 99 471-571 267-381 (457)
197 3lvg_A Clathrin heavy chain 1; 97.9 5.5E-06 1.9E-10 79.2 4.4 411 2-458 66-534 (624)
198 3ro3_A PINS homolog, G-protein 97.9 3.1E-05 1E-09 65.1 8.6 136 403-538 11-160 (164)
199 1zu2_A Mitochondrial import re 97.9 8.9E-06 3.1E-10 66.6 4.0 88 483-571 13-121 (158)
200 4b4t_Q 26S proteasome regulato 97.9 0.00013 4.4E-09 73.0 13.5 162 409-570 12-204 (434)
201 3bee_A Putative YFRE protein; 97.8 0.00011 3.6E-09 54.8 8.6 70 504-573 3-75 (93)
202 3n71_A Histone lysine methyltr 97.8 8.8E-05 3E-09 74.4 10.4 126 446-571 319-465 (490)
203 3n71_A Histone lysine methyltr 97.8 9E-05 3.1E-09 74.3 10.0 120 481-618 318-452 (490)
204 1zu2_A Mitochondrial import re 97.7 2.2E-05 7.6E-10 64.2 4.2 89 448-541 14-125 (158)
205 3qwp_A SET and MYND domain-con 97.7 0.00014 4.8E-09 71.8 10.6 119 479-615 294-427 (429)
206 1klx_A Cysteine rich protein B 97.7 0.001 3.4E-08 54.1 13.4 112 450-572 9-128 (138)
207 2l6j_A TPR repeat-containing p 97.6 0.00017 5.7E-09 56.0 8.0 67 505-571 2-68 (111)
208 2kat_A Uncharacterized protein 97.6 0.00014 4.6E-09 57.1 7.3 82 454-539 3-85 (115)
209 3qww_A SET and MYND domain-con 97.6 0.0001 3.6E-09 72.6 7.9 107 484-608 310-431 (433)
210 1dce_A Protein (RAB geranylger 97.5 0.001 3.5E-08 68.5 13.9 152 413-570 40-221 (567)
211 1na3_A Designed protein CTPR2; 97.5 0.00035 1.2E-08 51.7 7.6 66 506-571 8-73 (91)
212 3ma5_A Tetratricopeptide repea 97.3 0.0003 1E-08 53.4 5.7 66 471-538 6-72 (100)
213 1qsa_A Protein (soluble lytic 97.3 0.11 3.7E-06 53.4 25.7 116 416-535 229-347 (618)
214 1klx_A Cysteine rich protein B 97.3 0.0048 1.6E-07 49.9 12.9 112 415-538 9-128 (138)
215 1pc2_A Mitochondria fission pr 97.3 0.0012 3.9E-08 53.5 8.8 90 449-541 11-105 (152)
216 3ly7_A Transcriptional activat 97.2 0.0076 2.6E-07 56.9 14.6 139 398-540 191-343 (372)
217 2kc7_A BFR218_protein; tetratr 97.2 0.0014 4.9E-08 49.3 8.2 79 478-566 6-86 (99)
218 3ly7_A Transcriptional activat 97.1 0.0033 1.1E-07 59.3 10.9 136 432-571 190-340 (372)
219 2kc7_A BFR218_protein; tetratr 97.1 0.0014 4.7E-08 49.4 6.8 59 513-571 6-65 (99)
220 3u64_A Protein TP_0956; tetrat 97.0 0.0029 9.9E-08 57.1 9.1 89 487-577 178-276 (301)
221 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0043 1.5E-07 47.2 7.8 78 471-548 4-87 (104)
222 1pc2_A Mitochondria fission pr 96.6 0.017 5.9E-07 46.6 10.2 79 419-500 16-99 (152)
223 1wy6_A Hypothetical protein ST 96.6 0.17 5.7E-06 39.3 16.1 141 411-573 17-157 (172)
224 3bee_A Putative YFRE protein; 96.4 0.022 7.4E-07 42.1 9.0 68 470-539 4-75 (93)
225 3qww_A SET and MYND domain-con 96.3 0.016 5.3E-07 57.1 10.1 97 448-544 310-424 (433)
226 3ltm_A Alpha-REP4; protein eng 96.3 0.27 9.3E-06 42.8 17.2 148 44-191 25-172 (211)
227 3qwp_A SET and MYND domain-con 96.2 0.022 7.5E-07 56.1 10.5 102 444-545 295-414 (429)
228 3ltm_A Alpha-REP4; protein eng 96.2 0.2 6.9E-06 43.7 16.0 157 66-222 16-172 (211)
229 3ltj_A Alpharep-4; protein eng 96.2 0.26 8.9E-06 42.5 16.5 143 49-191 25-167 (201)
230 3mkq_A Coatomer beta'-subunit; 96.2 0.062 2.1E-06 58.4 15.1 120 29-165 607-727 (814)
231 3ltj_A Alpharep-4; protein eng 96.1 0.21 7.3E-06 43.1 15.3 176 10-186 17-193 (201)
232 1nzn_A CGI-135 protein, fissio 96.0 0.12 4.3E-06 40.0 11.3 92 450-544 15-111 (126)
233 3mkq_A Coatomer beta'-subunit; 96.0 0.15 5.2E-06 55.2 16.7 103 121-235 606-709 (814)
234 3u64_A Protein TP_0956; tetrat 95.8 0.015 5.2E-07 52.4 6.5 83 452-539 179-272 (301)
235 2v5f_A Prolyl 4-hydroxylase su 95.8 0.035 1.2E-06 42.1 7.7 66 505-570 3-75 (104)
236 1nzn_A CGI-135 protein, fissio 95.7 0.062 2.1E-06 41.6 8.8 84 486-570 15-103 (126)
237 4h7y_A Dual specificity protei 95.6 0.031 1E-06 44.4 6.7 101 437-540 14-127 (161)
238 3mkq_B Coatomer subunit alpha; 95.3 0.87 3E-05 37.7 14.8 126 412-567 16-141 (177)
239 3mkq_B Coatomer subunit alpha; 94.5 1 3.5E-05 37.3 13.2 129 378-533 13-141 (177)
240 4h7y_A Dual specificity protei 94.2 0.16 5.4E-06 40.4 7.1 102 398-502 10-124 (161)
241 1oyz_A Hypothetical protein YI 94.1 3.1 0.00011 37.8 17.5 18 267-284 204-221 (280)
242 4gns_B Protein CSD3, chitin bi 93.5 0.26 9E-06 51.6 9.5 125 440-567 252-397 (754)
243 1y8m_A FIS1; mitochondria, unk 92.7 1.9 6.4E-05 34.1 10.9 74 469-542 36-112 (144)
244 3ffl_A Anaphase-promoting comp 92.0 0.48 1.6E-05 38.6 7.1 26 542-567 123-148 (167)
245 1oyz_A Hypothetical protein YI 91.9 7.2 0.00024 35.4 18.9 183 18-200 34-230 (280)
246 3o48_A Mitochondria fission 1 91.9 0.74 2.5E-05 35.8 7.7 72 470-543 38-114 (134)
247 1y8m_A FIS1; mitochondria, unk 91.3 4.5 0.00015 31.9 12.5 82 488-571 22-107 (144)
248 3o48_A Mitochondria fission 1 90.9 2.5 8.5E-05 32.9 9.7 68 503-570 36-107 (134)
249 1wy6_A Hypothetical protein ST 90.6 5.1 0.00017 31.3 12.7 53 240-292 93-148 (172)
250 1v54_E Cytochrome C oxidase po 90.4 2.8 9.6E-05 30.6 8.9 62 487-548 25-86 (109)
251 4b4t_P 26S proteasome regulato 90.3 4.2 0.00015 40.0 13.7 95 475-569 140-246 (445)
252 4ady_A RPN2, 26S proteasome re 89.7 25 0.00084 37.9 27.8 402 101-517 220-671 (963)
253 2ff4_A Probable regulatory pro 89.4 0.92 3.2E-05 43.8 8.0 69 509-577 173-246 (388)
254 4ady_A RPN2, 26S proteasome re 88.7 29 0.001 37.4 26.2 251 278-534 383-656 (963)
255 3txn_A 26S proteasome regulato 88.6 9.6 0.00033 36.5 14.1 91 477-567 104-207 (394)
256 1v54_E Cytochrome C oxidase po 86.2 3.4 0.00012 30.2 7.1 61 417-479 26-86 (109)
257 2y69_E Cytochrome C oxidase su 85.4 7.4 0.00025 30.2 8.9 62 487-548 68-129 (152)
258 1zbp_A Hypothetical protein VP 85.0 2.3 8E-05 37.8 7.1 111 445-570 6-129 (273)
259 4gns_B Protein CSD3, chitin bi 85.0 6.6 0.00022 41.2 11.6 53 479-533 344-397 (754)
260 2wpv_A GET4, UPF0363 protein Y 84.6 24 0.00083 32.4 19.2 183 245-464 20-216 (312)
261 4b4t_P 26S proteasome regulato 84.1 33 0.0011 33.6 16.0 97 404-500 140-246 (445)
262 2uwj_G Type III export protein 83.8 9.6 0.00033 27.7 8.3 61 377-440 46-106 (115)
263 2ff4_A Probable regulatory pro 83.7 1.6 5.5E-05 42.1 6.2 63 443-508 178-246 (388)
264 2p58_C Putative type III secre 83.0 10 0.00035 27.6 8.3 61 377-440 47-107 (116)
265 4fhn_B Nucleoporin NUP120; pro 82.1 14 0.00048 41.5 13.8 190 375-568 817-1048(1139)
266 3ffl_A Anaphase-promoting comp 80.0 9.2 0.00031 31.1 8.2 23 478-500 128-150 (167)
267 2y69_E Cytochrome C oxidase su 79.9 7.3 0.00025 30.2 7.1 60 418-479 70-129 (152)
268 1zbp_A Hypothetical protein VP 79.9 12 0.0004 33.4 9.5 120 410-544 6-137 (273)
269 2qx5_A Nucleoporin NIC96; mRNA 78.4 46 0.0016 34.3 14.9 321 212-567 157-564 (661)
270 3lpz_A GET4 (YOR164C homolog); 78.3 43 0.0015 31.0 20.7 182 246-464 20-215 (336)
271 4b4t_R RPN7, 26S proteasome re 77.8 8.4 0.00029 37.7 9.1 94 474-567 133-234 (429)
272 4fhn_B Nucleoporin NUP120; pro 77.5 38 0.0013 38.0 15.4 145 406-569 817-966 (1139)
273 3lpz_A GET4 (YOR164C homolog); 75.6 51 0.0017 30.5 19.2 164 374-569 39-215 (336)
274 3esl_A Checkpoint serine/threo 72.2 34 0.0012 28.9 9.9 53 485-537 92-145 (202)
275 1wdy_A 2-5A-dependent ribonucl 71.2 17 0.00058 32.6 9.1 23 274-296 7-29 (285)
276 3txn_A 26S proteasome regulato 70.2 77 0.0026 30.2 23.6 227 305-572 104-345 (394)
277 4b4t_R RPN7, 26S proteasome re 68.9 21 0.00071 34.9 9.4 94 372-465 133-237 (429)
278 2uwj_G Type III export protein 67.1 34 0.0012 24.9 9.6 79 127-208 19-100 (115)
279 2p58_C Putative type III secre 66.2 36 0.0012 24.8 10.2 79 127-208 20-101 (116)
280 2wpv_A GET4, UPF0363 protein Y 64.3 88 0.003 28.7 19.6 168 373-570 36-217 (312)
281 4a1g_A Mitotic checkpoint seri 59.5 66 0.0023 25.7 9.4 45 491-535 84-129 (152)
282 1qsa_A Protein (soluble lytic 59.4 1.6E+02 0.0055 30.1 41.3 428 93-561 16-470 (618)
283 3mv2_A Coatomer subunit alpha; 58.9 1.1E+02 0.0037 28.0 12.9 128 411-570 124-256 (325)
284 2wvi_A Mitotic checkpoint seri 56.4 79 0.0027 25.7 9.0 30 541-570 96-125 (164)
285 1n11_A Ankyrin; clathrin, BAND 56.0 1.5E+02 0.005 28.6 15.2 361 182-568 17-400 (437)
286 3esl_A Checkpoint serine/threo 51.1 71 0.0024 26.9 8.1 58 449-507 92-150 (202)
287 1te4_A Conserved protein MTH18 49.2 21 0.00071 27.6 4.6 52 140-191 51-102 (131)
288 1wdy_A 2-5A-dependent ribonucl 48.9 1.4E+02 0.0048 26.2 14.8 20 151-170 8-27 (285)
289 2nsz_A Programmed cell death p 47.3 41 0.0014 26.1 5.8 64 273-336 11-79 (129)
290 3ygs_P Procaspase 9; apoptosis 46.4 46 0.0016 24.2 5.7 36 222-257 52-87 (97)
291 3eu9_A Huntingtin-interacting 45.5 1.1E+02 0.0038 26.0 9.5 210 355-573 22-239 (240)
292 2nsz_A Programmed cell death p 41.0 66 0.0023 24.9 6.1 26 149-174 11-36 (129)
293 2ion_A PDCD4, programmed cell 40.4 35 0.0012 27.4 4.6 64 273-336 13-81 (152)
294 1te4_A Conserved protein MTH18 39.9 22 0.00074 27.5 3.3 52 111-162 53-104 (131)
295 3eiq_C Programmed cell death p 39.5 2.4E+02 0.0083 26.4 14.3 65 374-438 221-290 (358)
296 3bqo_A Telomeric repeat-bindin 38.7 1.1E+02 0.0038 25.6 7.1 59 488-547 94-157 (211)
297 2d2s_A Exocyst complex compone 38.6 86 0.003 27.3 7.2 89 479-569 25-119 (235)
298 3kea_A K1L; tropism, ANK repea 38.3 1.8E+02 0.0062 25.9 9.9 15 380-394 69-83 (285)
299 4b4t_S RPN3, 26S proteasome re 38.1 1.3E+02 0.0046 29.7 9.1 59 84-142 232-298 (523)
300 4a1g_A Mitotic checkpoint seri 37.4 1.6E+02 0.0054 23.5 8.7 46 526-571 84-131 (152)
301 1ya0_A SMG-7 transcript varian 37.0 98 0.0034 30.7 8.1 54 515-568 160-213 (497)
302 3ljn_A Hypothetical protein; a 36.0 2.7E+02 0.0091 25.8 11.1 50 276-325 57-106 (364)
303 2zu6_B Programmed cell death p 35.6 2.4E+02 0.0084 25.7 10.0 25 274-298 8-32 (307)
304 2d2s_A Exocyst complex compone 33.1 75 0.0026 27.7 5.9 88 407-498 24-117 (235)
305 2r9g_A AAA ATPase, central reg 33.0 1.4E+02 0.0047 25.1 6.9 63 304-367 15-85 (204)
306 2p1h_A APAF-1, apoptotic prote 32.8 1.2E+02 0.0042 21.5 6.2 39 219-257 48-86 (94)
307 3aji_A 26S proteasome non-ATPa 32.7 2E+02 0.0067 24.3 8.9 16 518-533 147-162 (231)
308 2ion_A PDCD4, programmed cell 32.4 65 0.0022 25.8 5.0 26 149-174 13-38 (152)
309 3mkr_B Coatomer subunit alpha; 32.1 2.7E+02 0.0094 25.4 9.4 69 489-571 178-248 (320)
310 1mzb_A Ferric uptake regulatio 32.0 1.1E+02 0.0039 23.7 6.3 60 325-385 8-68 (136)
311 3eiq_C Programmed cell death p 31.6 3.3E+02 0.011 25.5 15.2 194 374-572 58-284 (358)
312 4aez_C MAD3, mitotic spindle c 31.6 2.1E+02 0.0071 24.6 8.1 49 489-537 131-180 (223)
313 2w57_A Ferric uptake regulatio 30.1 1.2E+02 0.0041 24.1 6.2 61 324-385 6-67 (150)
314 4b4t_S RPN3, 26S proteasome re 29.8 1.4E+02 0.0046 29.7 7.6 64 437-500 232-298 (523)
315 2xig_A Ferric uptake regulatio 29.5 1.2E+02 0.0041 24.1 6.1 61 324-385 16-76 (150)
316 2fe3_A Peroxide operon regulat 28.8 1.2E+02 0.0042 23.8 6.1 59 325-384 12-70 (145)
317 2fe3_A Peroxide operon regulat 28.3 97 0.0033 24.4 5.4 45 406-450 26-70 (145)
318 1ug3_A EIF4GI, eukaryotic prot 28.3 2.9E+02 0.01 25.5 9.5 140 273-426 15-166 (339)
319 3kae_A CDC27, possible protein 27.1 2.1E+02 0.0073 23.3 6.8 58 481-538 71-145 (242)
320 3ygs_P Procaspase 9; apoptosis 26.0 1.1E+02 0.0037 22.1 4.8 34 191-224 52-85 (97)
321 2fu4_A Ferric uptake regulatio 25.4 1.6E+02 0.0056 20.0 6.3 60 325-385 7-67 (83)
322 4gq2_M Nucleoporin NUP120; bet 25.2 4.8E+02 0.016 28.4 11.8 27 509-535 899-925 (950)
323 4ets_A Ferric uptake regulatio 25.0 2.2E+02 0.0074 22.9 7.0 68 317-385 14-84 (162)
324 1n11_A Ankyrin; clathrin, BAND 23.7 4.7E+02 0.016 24.8 17.7 329 27-370 17-372 (437)
325 3ljn_A Hypothetical protein; a 23.1 3E+02 0.01 25.4 8.8 181 376-566 56-266 (364)
326 1k1a_A B-cell lymphoma 3-encod 23.0 2.6E+02 0.009 23.6 7.9 185 376-573 12-208 (241)
327 2o03_A Probable zinc uptake re 23.0 1E+02 0.0035 23.8 4.5 46 406-451 15-60 (131)
328 3ctd_A Putative ATPase, AAA fa 22.6 2.1E+02 0.0071 24.3 6.3 67 301-367 33-107 (213)
329 2p1h_A APAF-1, apoptotic prote 22.4 1.2E+02 0.0042 21.5 4.5 31 160-190 51-81 (94)
330 2xig_A Ferric uptake regulatio 22.4 1.4E+02 0.0048 23.7 5.3 45 406-450 31-75 (150)
331 1wgl_A TOLL-interacting protei 21.6 1.7E+02 0.0058 18.8 6.1 24 483-506 34-57 (59)
332 1k1a_A B-cell lymphoma 3-encod 21.3 3.7E+02 0.013 22.6 9.2 15 518-532 191-205 (241)
333 2wvi_A Mitotic checkpoint seri 20.8 3.4E+02 0.011 22.0 9.5 45 420-464 79-124 (164)
334 3bge_A Predicted ATPase; struc 20.2 1.3E+02 0.0045 25.2 4.6 40 311-350 18-57 (201)
335 2ijq_A Hypothetical protein; s 20.1 3.5E+02 0.012 21.8 7.3 52 484-535 44-103 (161)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-39 Score=344.59 Aligned_cols=473 Identities=10% Similarity=0.007 Sum_probs=269.3
Q ss_pred HHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCC--CCcccHHHHHHHHHcCCChHHHHHHHHh
Q 006955 62 LMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPL--KDVVSWNLVIGALVNCQRMDLAESYFKE 139 (624)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 139 (624)
+...|.+..+...+..+..++...|+.++..+.+.|++++|+.+|+++.. |+..++..++.+|.+.|++++|..++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 44566677777777777778888999999999999999999999998874 8888888899999999999999999998
Q ss_pred cc--cCChhHHHHHHHHHHhCCChHHHHHHhccCCCC-------------------ChhHHHHHHHHHHHcCChhHHHHH
Q 006955 140 MG--ARDVASWTIMVNGLVREGRIVEARKLFDKMPAK-------------------DVQAWNLMIAGYLDNGCVGVAEDL 198 (624)
Q Consensus 140 ~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~~A~~~ 198 (624)
+. .+++.+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.++
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 143 EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp TCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 84 468889999999999999999999999965543 367888888888888888888888
Q ss_pred HHHcccCCcc---cHHHHHHHHHcCCCHHHHHHH---hhhCCCC----CcchHHHHHHHHHhcCChHHHHHHHhhcCC--
Q 006955 199 FQKMHDRDLT---SWKQLINGLVNSRRIDAAISY---FKQMPET----CEKTWNSIISVLIRNGLVKEAHSYLEKYPY-- 266 (624)
Q Consensus 199 ~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~---~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-- 266 (624)
|+++.+.++. .+..+...+...+..+.+... +..+... ...+|..++..|.+.|++++|..+|+++..
T Consensus 223 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 302 (597)
T 2xpi_A 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE 302 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGG
T ss_pred HHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCC
Confidence 8888764433 333343333322222211110 1111111 111233334444455555555555555542
Q ss_pred CCcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHH
Q 006955 267 SNIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLT 343 (624)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 343 (624)
++..+++.++.+|.+.|++++|..+|+++.. .+..+|+.++.++...|++++|..+++++.+.. +.+..++..+..
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 4444555555555555555555555554431 234445555555555555555555555554321 223444444444
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHH
Q 006955 344 ICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
.+.+.|++++|..+|+.+.+.. +.+..+|+.++.+|.+.|++++|+++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMD--------------------------------PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444444444321 22344555555555555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccC--
Q 006955 424 FERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-- 501 (624)
Q Consensus 424 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 501 (624)
|+++.+.+ +++..++..++.+|.+.|++++|.++|+++.+.. +.++.+|+.++..|.+.|++++|.++|+++.+.
T Consensus 430 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 430 YTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 55555531 2244555555555555555555555555555421 124555555555555556666655555555443
Q ss_pred --CCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 502 --GIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 502 --g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+..|+ ..+|..++.+|...|++++|...++++.+..|.++.+|..++.+|...|++++|.+.++++.+.
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33444 4555555555555566666666666555555555555556666666666666666655555543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.2e-40 Score=346.84 Aligned_cols=459 Identities=9% Similarity=-0.027 Sum_probs=338.1
Q ss_pred HHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc--CChhHHHHHHHHHHhCCChHHHHHHhcc
Q 006955 93 YVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA--RDVASWTIMVNGLVREGRIVEARKLFDK 170 (624)
Q Consensus 93 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 170 (624)
+...|....+...+..+..+++..|+.++..+.+.|++++|..+++++.. |+..++..++.+|.+.|++++|..+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 34556666777777777667888899999999999999999999998864 7778888899999999999999999998
Q ss_pred CC--CCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHH
Q 006955 171 MP--AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVL 248 (624)
Q Consensus 171 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~ 248 (624)
+. .+++.+++.++.+|.+.|++++|.++|+++...+... ..+...++ +..-..++..+|..++.++
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 143 EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-------QDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp TCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-------CCSSCCHHHHHHHHHHHHH
T ss_pred HhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-------cccccchhHHHHHHHHHHH
Confidence 84 5688899999999999999999999998654333000 00000000 0000011233444555555
Q ss_pred HhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHH--H-HhhcCCC----CceehhhhhhHhhcCCCchH
Q 006955 249 IRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIK--V-FELMTTR----DVTVWNVMIFGLGENDLGEE 318 (624)
Q Consensus 249 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 318 (624)
.+.|++++|..+|+++. +.+...+..+...+...+..+.+.. + +..+... ...+|+.++..|.+.|++++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 55555555555555444 2222233333332222221111110 0 1222111 23457777888999999999
Q ss_pred HHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC-
Q 006955 319 GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP- 397 (624)
Q Consensus 319 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 397 (624)
|.++|+++.+. +++..++..++.++.+.|++++|..+|+.+.+.+ +.+..+++.++.+|.+.|++++|..+++++.
T Consensus 291 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 367 (597)
T 2xpi_A 291 AEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367 (597)
T ss_dssp HHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999988765 5888999999999999999999999999998876 4477888999999999999999999999876
Q ss_pred --CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcch
Q 006955 398 --IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAH 474 (624)
Q Consensus 398 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 474 (624)
+.+..+|+.++..|.+.|++++|.++|+++.+. .| +..+|..++..+.+.|++++|.++|+++.+. .+++..+
T Consensus 368 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 443 (597)
T 2xpi_A 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLP 443 (597)
T ss_dssp HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHH
T ss_pred hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHH
Confidence 557889999999999999999999999999884 44 4679999999999999999999999999874 2348899
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc------CCCC-CchHHHH
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMEL------EPNN-SGVYLIL 547 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~p~~-~~~~~~l 547 (624)
|..++.+|.+.|++++|.++|+++.+.. +.++.+|..++..|...|++++|...++++.+. .|.+ ..++..+
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999998753 457889999999999999999999999999987 4533 5689999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC
Q 006955 548 TEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+.+|.+.|++++|.++++++.+.+
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC
Confidence 999999999999999999998875
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.5e-26 Score=231.16 Aligned_cols=364 Identities=11% Similarity=0.110 Sum_probs=248.9
Q ss_pred HHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 006955 186 YLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPE---TCEKTWNSIISVLIRNGLVKEAHS 259 (624)
Q Consensus 186 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~ 259 (624)
+.+.|++++|++.++.+.+. +...+..+...+...|++++|...++...+ .+..++..+...+.+.|++++|..
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 33444444444444444321 112233333344444444444444443332 233345555555555555555555
Q ss_pred HHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC--C-CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCC
Q 006955 260 YLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT--R-DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSP 333 (624)
Q Consensus 260 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 333 (624)
.|+++. +.+...+..+..++.+.|++++|...|+++.. | +...+..+...+...|++++|.+.|+++.+.. +.
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 167 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 555554 33344556666666666666666666665542 2 33445556666667777777777777766642 23
Q ss_pred CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHH
Q 006955 334 DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICG 410 (624)
Q Consensus 334 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 410 (624)
+..++..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|+..|++.. +.+..++..+..+
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHH
Confidence 35666667777777777777777777777654 2345556667777777888888887777654 3456788888899
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChH
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLID 489 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 489 (624)
|...|++++|+..++++.+. .|+ ..++..+...+.+.|++++|...++++.+. .+++..++..++..+.+.|+++
T Consensus 247 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999884 454 567888888999999999999999998874 2347888899999999999999
Q ss_pred HHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006955 490 EAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGR 556 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 556 (624)
+|.+.++++.+.. +.+..++..+..++...|++++|...++++++..|.++..+..++.++...|+
T Consensus 323 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 323 EAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999988742 34577888999999999999999999999999999999999999988887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=9.5e-26 Score=225.24 Aligned_cols=349 Identities=14% Similarity=0.100 Sum_probs=306.3
Q ss_pred HHHHHHcCCCHHHHHHHhhhCCC--CCc-chHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChH
Q 006955 213 LINGLVNSRRIDAAISYFKQMPE--TCE-KTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVG 286 (624)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 286 (624)
+...+.+.|++++|++.+..+.+ |+. ..+..+...+...|++++|...++.+. +.+..++..+...|.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 45677889999999999988864 543 456667778899999999999998877 667778999999999999999
Q ss_pred HHHHHHhhcCC--C-CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-HHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006955 287 SAIKVFELMTT--R-DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-NATFTSVLTICSDLPTLDLGRQIHAQAI 362 (624)
Q Consensus 287 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 362 (624)
+|...|+++.. | +..+|..+..++...|++++|...|+++.+. .|+ ...+..+...+...|++++|...+..+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999998853 3 5567999999999999999999999999876 454 4556677788899999999999999998
Q ss_pred HhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhh
Q 006955 363 KIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DIT 438 (624)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~ 438 (624)
+.. +.+...+..+...+.+.|++++|+..|+++. +.+...|..+...+...|++++|...+++..+ ..|+ ..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHH
Confidence 864 4456778889999999999999999999886 44567889999999999999999999999988 4565 578
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC 517 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (624)
+..+..++...|++++|...++++.+. .| ++.+|..++..|.+.|++++|.+.++++.+.. ++++.++..+...+
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 888999999999999999999999873 46 67889999999999999999999999998752 55788999999999
Q ss_pred HhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 518 RIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 518 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
...|++++|...++++++..|.++.++..++.+|...|++++|.+.++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1e-26 Score=235.73 Aligned_cols=186 Identities=13% Similarity=0.102 Sum_probs=134.8
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCC---------cHHHHHHHHHHHHhCCCCCcch
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPT---------LDLGRQIHAQAIKIARNQFTTV 372 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 372 (624)
.++.+|.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~-- 105 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE-- 105 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH--
Confidence 4677788888888888888888888888888888888888888876654 45667777777777766654
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChH
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLV 452 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 452 (624)
.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++
T Consensus 106 -----------------------------~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 106 -----------------------------ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp -----------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred -----------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH
Confidence 455556666666666667777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh
Q 006955 453 DQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI 519 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 519 (624)
++|.++|++|.+. |+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..+..
T Consensus 157 ~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 157 DKAYEVDAHMVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777654 57777777777777777777777777777777777777777777777666543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=4.3e-26 Score=231.09 Aligned_cols=179 Identities=14% Similarity=0.104 Sum_probs=139.7
Q ss_pred chhhHHHHHHHhcCChHHHHHHHhhcC----CCCceehhhhhhHhhcCCC---------chHHHHHHHHhHHcCCCCCHH
Q 006955 270 ASWTNVIVGYFEMGEVGSAIKVFELMT----TRDVTVWNVMIFGLGENDL---------GEEGLKFFVQMKESGPSPDNA 336 (624)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~m~~~~~~p~~~ 336 (624)
.+++.+|++|++.|++++|.++|++|. .||..+||+||.+|++.+. .++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 468889999999999999999999996 4799999999999987665 578999999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC----CCCchhHHHHHHHHH
Q 006955 337 TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP----IHDIISWNSIICGLA 412 (624)
Q Consensus 337 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~ 412 (624)
||++++.+|++.|+++.|..+|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|. .||..+|++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999998877776666666666666665555555554 455555555555555
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 413 YHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 413 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
+.|++++|.+++++|++.|..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555444
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.4e-23 Score=216.23 Aligned_cols=418 Identities=10% Similarity=-0.004 Sum_probs=307.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHhccCC--CCChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcC
Q 006955 146 ASWTIMVNGLVREGRIVEARKLFDKMP--AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNS 220 (624)
Q Consensus 146 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 220 (624)
..+......+.+.|++++|++.|+++. .|+..++..++.++.+.|++++|+..++++.+. +..++..+..++...
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 456667778888999999999988887 467888888888999999999999999888753 334677888888888
Q ss_pred CCHHHHHHHhhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhcC-----CCCcchhhH--HHHHHHhcCChHHHHH
Q 006955 221 RRIDAAISYFKQMPE---TCEKTWNSIISVLIRNGLVKEAHSYLEKYP-----YSNIASWTN--VIVGYFEMGEVGSAIK 290 (624)
Q Consensus 221 ~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~--l~~~~~~~g~~~~A~~ 290 (624)
|++++|+..|+.+.+ ++......++..+........+.+.+..+. +++...... .............+..
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 888888888887764 233344444444444333333333332111 000000000 0000001111111112
Q ss_pred HHhhcCC---------C-CceehhhhhhHhh---cCCCchHHHHHHHHhHH-----cCCC--------CCHHHHHHHHHH
Q 006955 291 VFELMTT---------R-DVTVWNVMIFGLG---ENDLGEEGLKFFVQMKE-----SGPS--------PDNATFTSVLTI 344 (624)
Q Consensus 291 ~~~~~~~---------~-~~~~~~~l~~~~~---~~~~~~~a~~~~~~m~~-----~~~~--------p~~~~~~~ll~~ 344 (624)
.+..... + +...+......+. +.|++++|+..|+++.+ .... .+...+..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 2222111 1 1233333344344 38999999999999887 3112 234567777888
Q ss_pred HcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHH
Q 006955 345 CSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKAL 421 (624)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 421 (624)
+...|+++.|...+..+.+.... ...+..+..+|...|++++|...++++. +.+..+|..+...+...|++++|.
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 89999999999999999987655 7788889999999999999999998765 446778999999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 422 ELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 422 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
..++++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..+...|...|++++|.+.++++.+
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999852 334578888899999999999999999999874 34 678899999999999999999999999876
Q ss_pred CCCCcC-------HHHHHHHHHHHHh---cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 501 DGIEVS-------PTVWGALLGACRI---HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 501 ~g~~p~-------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
. .|+ ...+..+..++.. .|++++|...++++++..|.++.++..++.+|...|++++|.+.+++..+.
T Consensus 401 ~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 401 L--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp H--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3 333 2388889999999 999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 006955 571 G 571 (624)
Q Consensus 571 ~ 571 (624)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.5e-22 Score=211.55 Aligned_cols=415 Identities=9% Similarity=-0.003 Sum_probs=214.1
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHhccc---CChhHHHHHHHHHHhCCChHHHHHHhccCC---CCChhHHHHHHHHHH
Q 006955 114 VVSWNLVIGALVNCQRMDLAESYFKEMGA---RDVASWTIMVNGLVREGRIVEARKLFDKMP---AKDVQAWNLMIAGYL 187 (624)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 187 (624)
...+..+...+.+.|++++|...|+++.+ .++..+..+..+|...|++++|++.++++. +.+..++..++..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 34566677777777888888888877764 256677777777777777777777777765 235667777777777
Q ss_pred HcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCC------CcchHHHHHHHHHhcCChHHHHHHH
Q 006955 188 DNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPET------CEKTWNSIISVLIRNGLVKEAHSYL 261 (624)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~~ 261 (624)
..|++++|+..|+ ....++......+..+...+...+|+..++.+... ........+..+....+.+.+...+
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 7777777777775 33333333333344455555556667666666541 1112233344444555555555555
Q ss_pred hhcCCCCcc---hhhHHHHHHHhc--------CChHHHHHHHhhcCCCCce----------ehhhhhhHhhcCCCchHHH
Q 006955 262 EKYPYSNIA---SWTNVIVGYFEM--------GEVGSAIKVFELMTTRDVT----------VWNVMIFGLGENDLGEEGL 320 (624)
Q Consensus 262 ~~~~~~~~~---~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~ 320 (624)
......+.. ....+...+... |++++|..+|+.+...++. ++..+...+...|++++|.
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 444433332 222333222221 3455555555555432211 2334444555556666666
Q ss_pred HHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCC
Q 006955 321 KFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHD 400 (624)
Q Consensus 321 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 400 (624)
..|++..+. .|+...+..+...+...|+++.|...+..+.+.. +.+
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------~~~ 309 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--------------------------------PEY 309 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--------------------------------TTC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--------------------------------CCC
Confidence 666655553 3444455555555555555555555555555443 223
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHH
Q 006955 401 IISWNSIICGLAYHGYAEKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCV 478 (624)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 478 (624)
+.+|..+...+...|++++|...++++.+. .| +...+..+...+...|++++|...++++.+. .| +...+..+
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l 384 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFF 384 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHH
Confidence 334444555555555555555555555442 22 2234444445555555555555555555442 13 34445555
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCcC-------HHHHHHHHHHHHhc----------CChHHHHHHHHHHHccCCCCC
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEVS-------PTVWGALLGACRIH----------NNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 541 (624)
...|...|++++|.+.++++.+. .|+ ...+..+..++... |++++|...++++++..|.++
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 462 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRL--EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc--CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCH
Confidence 55555555555555555554331 110 01122223334444 555555555555555555555
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.++..++.+|...|++++|.+.+++..+.
T Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 463 QAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55555555555555555555555555443
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.5e-23 Score=212.11 Aligned_cols=428 Identities=11% Similarity=-0.038 Sum_probs=321.3
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHhccc--CChhHHHHHHHHHHhCCChHHHHHHhccCC---CCChhHHHHHHHHHHHc
Q 006955 115 VSWNLVIGALVNCQRMDLAESYFKEMGA--RDVASWTIMVNGLVREGRIVEARKLFDKMP---AKDVQAWNLMIAGYLDN 189 (624)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 189 (624)
..+......+.+.|++++|...|+++.+ |++..+..+..++...|++++|.+.++++. +.+..++..++.++.+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 4567778889999999999999999986 788899999999999999999999999876 34678999999999999
Q ss_pred CChhHHHHHHHHcccCCc---ccHHHHHHHHHcCCCHHHHHHHhhhCCC----CCcchHHHHH---HHHHhcCChHHHHH
Q 006955 190 GCVGVAEDLFQKMHDRDL---TSWKQLINGLVNSRRIDAAISYFKQMPE----TCEKTWNSII---SVLIRNGLVKEAHS 259 (624)
Q Consensus 190 g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll---~~~~~~~~~~~a~~ 259 (624)
|++++|...|+++.+.++ .....++..+........+.+.+..+.. |+...+..-. ..............
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 999999999999976443 3344445544444333333333322211 1111000000 00011111111111
Q ss_pred HHhhcC----------CCCcchhhHHHHHHHh---cCChHHHHHHHhhcCC----------------C-CceehhhhhhH
Q 006955 260 YLEKYP----------YSNIASWTNVIVGYFE---MGEVGSAIKVFELMTT----------------R-DVTVWNVMIFG 309 (624)
Q Consensus 260 ~~~~~~----------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~ 309 (624)
.+.... +.+...+......+.. .|++++|...|+++.. + +..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 222111 1223344444444544 8899999999887654 1 34567788889
Q ss_pred hhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHH
Q 006955 310 LGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA 389 (624)
Q Consensus 310 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (624)
+...|++++|...|+++.+.. |+...+..+..++...|+++.|...+..+.+.. +.+..++..+...|...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999998864 447788888899999999999999999988764 44567788899999999999999
Q ss_pred HHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhc
Q 006955 390 LLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKY 466 (624)
Q Consensus 390 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 466 (624)
...++++. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 324 GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 99998865 4567789999999999999999999999998842 3345788888999999999999999999988742
Q ss_pred CCCCC----cchHHHHHHHhhc---cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 467 FLQPR----SAHYTCVVDLLGR---FGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 467 ~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
.-.|+ ...+..+...|.. .|++++|.+.++++.+.. +.++.++..+..++...|++++|...+++++++.|.
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 11122 2388899999999 999999999999988742 346778899999999999999999999999999998
Q ss_pred CCchHHHH
Q 006955 540 NSGVYLIL 547 (624)
Q Consensus 540 ~~~~~~~l 547 (624)
++..+..+
T Consensus 482 ~~~~~~~~ 489 (514)
T 2gw1_A 482 MEEKLQAI 489 (514)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 87777666
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=5.6e-22 Score=207.17 Aligned_cols=428 Identities=10% Similarity=0.020 Sum_probs=311.9
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHhccc--C-ChhHHHHHHHHH
Q 006955 82 DVVTWNSMISGYVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGALVNCQRMDLAESYFKEMGA--R-DVASWTIMVNGL 155 (624)
Q Consensus 82 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 155 (624)
....+..+...+.+.|++++|+..|+++.+ | ++.++..+..++...|++++|...++++.+ | ++..+..+..++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 456788999999999999999999999875 4 667889999999999999999999999875 3 667888999999
Q ss_pred HhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccC------CcccHHHHHHHHHcCCCHHHHHHH
Q 006955 156 VREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR------DLTSWKQLINGLVNSRRIDAAISY 229 (624)
Q Consensus 156 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~ 229 (624)
...|++++|.+.|+.+ ..++......+..+...+....|...++++... ........+..+....+.+.+...
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999999643 333333344455666677788999999999763 223456777788888999999988
Q ss_pred hhhCCCCCcc---hHHHHHHHHH--------hcCChHHHHHHHhhcCC---CCcc-------hhhHHHHHHHhcCChHHH
Q 006955 230 FKQMPETCEK---TWNSIISVLI--------RNGLVKEAHSYLEKYPY---SNIA-------SWTNVIVGYFEMGEVGSA 288 (624)
Q Consensus 230 ~~~~~~~~~~---~~~~ll~~~~--------~~~~~~~a~~~~~~~~~---~~~~-------~~~~l~~~~~~~g~~~~A 288 (624)
+......+.. ....+...+. ..|++++|..+++.+.. .+.. ++..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 8888765544 2333332222 22578899999988873 2222 466677888999999999
Q ss_pred HHHHhhcCC--CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Q 006955 289 IKVFELMTT--RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIAR 366 (624)
Q Consensus 289 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 366 (624)
...|+.+.. |+...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 263 QVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 999998863 456778888899999999999999999988763 3345667666667777777777777776666543
Q ss_pred CCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 367 NQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
+.+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 341 -------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 341 -------------------------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEIL 388 (537)
T ss_dssp -------------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred -------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 1234456667777778888888888888877742 23345777777778
Q ss_pred cccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhcc----------CChHHHHHHHHHcccCCCCcCHHHHHH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRF----------GLIDEAMNLLNEIRADGIEVSPTVWGA 512 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (624)
...|++++|...++++.+...-.++ ...+..+...|.+. |++++|...++++.+.. +.++..+..
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 467 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIG 467 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 8888888888888887664211111 11233445666666 99999999999887742 335778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
+..++...|++++|...+++++++.|.++....
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 889999999999999999999999987665544
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=4.8e-22 Score=202.68 Aligned_cols=355 Identities=10% Similarity=0.042 Sum_probs=244.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhhcC
Q 006955 240 TWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLGEN 313 (624)
Q Consensus 240 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 313 (624)
.+..+...+.+.|++++|..+|+++. +.+..++..+..+|...|++++|...|+.+.+ .+..++..+...|...
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 107 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ 107 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 34444445555555555555555444 33444555555555555555555555555432 2344555566666666
Q ss_pred CCchHHHHHHHHhHHcCCCCCH----HHHHHH------------HHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHH
Q 006955 314 DLGEEGLKFFVQMKESGPSPDN----ATFTSV------------LTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMI 377 (624)
Q Consensus 314 ~~~~~a~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 377 (624)
|++++|...|+++.+. .|+. ..+..+ ...+...|+++.|...++.+.+.. +.+..++..++
T Consensus 108 g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 184 (450)
T 2y4t_A 108 GKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRA 184 (450)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 6666666666666543 3332 222222 334666777888888887777653 34566677788
Q ss_pred HHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHH-----------
Q 006955 378 TMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI-TFVGV----------- 442 (624)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l----------- 442 (624)
.+|.+.|++++|+..|+++. +.++.+|..+...|...|++++|+..++++.+ ..|+.. .+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888775 45778899999999999999999999999987 456554 33333
Q ss_pred -HHHhcccChHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 443 -LSACSYAGLVDQGRYYFDCMKNKYFLQPR-----SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 443 -l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
...+...|++++|..+++++.+. .|+ ...+..++.++.+.|++++|++.++++.+.. +.++..|..+..+
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 67889999999999999999874 454 3478889999999999999999999988742 3468899999999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHH------------HHHhcC-----ChHHHHHHHHHH-HHCCCccCCce
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTE------------MYLSCG-----RREDAKRIFAQM-KENGVKKEPGC 578 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-----~~~~A~~~~~~m-~~~~~~~~~~~ 578 (624)
|...|++++|...+++++++.|.++..+..++. .|...| +.+++.+.++++ .+......++
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~- 417 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN- 417 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCS-
T ss_pred HHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCC-
Confidence 999999999999999999999999999999984 455556 566777777763 3332111111
Q ss_pred eEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHHHHHHhhh
Q 006955 579 SWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIEREIL 619 (624)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (624)
+...+...+....+.+....++..+.
T Consensus 418 ---------------~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 418 ---------------EEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred ---------------chHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 00012355666677777777665543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=3.3e-21 Score=196.45 Aligned_cols=358 Identities=13% Similarity=0.024 Sum_probs=237.9
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHccc---CCcccHHHHHHHHHcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHH
Q 006955 175 DVQAWNLMIAGYLDNGCVGVAEDLFQKMHD---RDLTSWKQLINGLVNSRRIDAAISYFKQMPE--T-CEKTWNSIISVL 248 (624)
Q Consensus 175 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~ 248 (624)
++..+..++..+.+.|++++|+.+|+++.+ .+..++..+..++...|++++|+..|+.+.+ | +..++..+..++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 567788888889999999999999988875 3445677778888888888888888887764 3 344666677777
Q ss_pred HhcCChHHHHHHHhhcCCC---Cc---chhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHH
Q 006955 249 IRNGLVKEAHSYLEKYPYS---NI---ASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKF 322 (624)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (624)
...|++++|...++++... +. ..+..++..+...+ +..+...+...|++++|+..
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777776622 22 34444433311110 11122234455556666666
Q ss_pred HHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CC
Q 006955 323 FVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IH 399 (624)
Q Consensus 323 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~ 399 (624)
|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..++..++.+|...|++++|+..|+++. +.
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 65555432 2344455555555566666666666666555542 2334555556666666666666666666554 22
Q ss_pred CchhHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHhcccChHHHHHHHHHHh
Q 006955 400 DIISWNSI------------ICGLAYHGYAEKALELFERMRLTDFKPDD-----ITFVGVLSACSYAGLVDQGRYYFDCM 462 (624)
Q Consensus 400 ~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~ 462 (624)
+...+..+ ...+...|++++|...|+++.+ ..|+. ..+..+..++.+.|++++|...++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33333333 7888899999999999999988 45653 36777888899999999999999998
Q ss_pred hhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHH------------HHhcC-----Ch
Q 006955 463 KNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGA------------CRIHN-----NI 523 (624)
Q Consensus 463 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~------------~~~~g-----~~ 523 (624)
.+. .| +...|..+..+|...|++++|.+.++++.+ +.|+ +..+..+..+ |...| +.
T Consensus 322 ~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 322 LQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 874 35 688899999999999999999999999987 4564 5666666633 33334 66
Q ss_pred HHHHHHHHH-HHccCCCCCc----------hHHHHHHHHHhcCChHHH
Q 006955 524 KVGEIAGER-VMELEPNNSG----------VYLILTEMYLSCGRREDA 560 (624)
Q Consensus 524 ~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A 560 (624)
+++.+.+++ +++..|++.. .+..+..+|...|+.+++
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 777888886 6777775322 455666666666665543
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=4.9e-17 Score=174.37 Aligned_cols=412 Identities=14% Similarity=0.156 Sum_probs=316.4
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHHHhccc-C-----ChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHH
Q 006955 113 DVVSWNLVIGALVNCQRMDLAESYFKEMGA-R-----DVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGY 186 (624)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 186 (624)
++.--....++|...|++.+|.++++++.. + +....+.++.+..+. +..+..+..+....-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 444556678888899999999999999873 2 235556677666665 5566666666555333 34477888
Q ss_pred HHcCChhHHHHHHHHcccCCcccHHHHHHHHH-cCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC
Q 006955 187 LDNGCVGVAEDLFQKMHDRDLTSWKQLINGLV-NSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYP 265 (624)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 265 (624)
...|.+++|..+|++... +...+..+. ..+++++|.++.++.. ++.+|..+..++...|++++|...|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~~-----~~~A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV-----NTSAVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC-----HHHHHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 899999999999999742 222223333 7889999999999773 4668889999999999999999999775
Q ss_pred CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC--CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHH
Q 006955 266 YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT--RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLT 343 (624)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 343 (624)
.+...|..++.++.+.|++++|.+.+....+ +++...+.++.+|++.+++++...+. . .|+...|..+..
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGD 1203 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHH
Confidence 6777888899999999999999999987654 34445556899999999888544332 2 556677888999
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHH
Q 006955 344 ICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
.|...|+++.|..+|..+ ..|..++.+|.+.|+++.|.+.+++.. ++.+|..+..+|...|++..|...
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC--CHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999985 367889999999999999999999885 567899999999999999888876
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhcc--CChHHHHHHHHHccc
Q 006955 424 FERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRF--GLIDEAMNLLNEIRA 500 (624)
Q Consensus 424 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~ 500 (624)
... +..+...+..++..|.+.|.+++|+.+++.... +.| ....|+-|..+|.+. ++..++.+.|..-..
T Consensus 1273 gl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1273 GLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 654 444556677889999999999999999987764 445 566777777777654 577777777775443
Q ss_pred CCCCc------CHHHHHHHHHHHHhcCChHHHHHHHHHHHc------------cCCCCCchHHHHHHHHHhcC-------
Q 006955 501 DGIEV------SPTVWGALLGACRIHNNIKVGEIAGERVME------------LEPNNSGVYLILTEMYLSCG------- 555 (624)
Q Consensus 501 ~g~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g------- 555 (624)
++| +...|..++-.|.+.|+++.|....-.-.. ..+.|+..|...+..|...+
T Consensus 1345 --i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndL 1422 (1630)
T 1xi4_A 1345 --IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDL 1422 (1630)
T ss_pred --cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHH
Confidence 333 466899999999999999999843222211 24668888998888888877
Q ss_pred --------ChHHHHHHHH
Q 006955 556 --------RREDAKRIFA 565 (624)
Q Consensus 556 --------~~~~A~~~~~ 565 (624)
+++.+.+++.
T Consensus 1423 l~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1423 LMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHhhhcCChHHHHHHHH
Confidence 7777777776
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1e-16 Score=171.98 Aligned_cols=374 Identities=12% Similarity=0.168 Sum_probs=251.4
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCC-CCC-----cchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHH
Q 006955 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMP-ERD-----MFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISG 92 (624)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 92 (624)
.||.--...+++|...|.+.+|+.+|+++. +++ ....+.++....+. +.....+..+....-+ ...+...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~I 1058 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANI 1058 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHH
Confidence 466666778888999999999999999987 332 24455555555555 4455555444443222 4557778
Q ss_pred HHhCCChhHHHHHhccCCCCCcccHHHHHHHHH-cCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccC
Q 006955 93 YVCNGLIDEALRVFHGMPLKDVVSWNLVIGALV-NCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKM 171 (624)
Q Consensus 93 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 171 (624)
+...|.+++|..+|++... +...+..+. ..+++++|.++.++. .++.+|..+..++...|++++|++.|.+
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiK- 1130 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIK- 1130 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHh-
Confidence 8888888999888888742 222222233 667888888888866 3567788888888888888888888855
Q ss_pred CCCChhHHHHHHHHHHHcCChhHHHHHHHHcccC--CcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHH
Q 006955 172 PAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR--DLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLI 249 (624)
Q Consensus 172 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 249 (624)
..|...|..++..+.+.|++++|.+.|....+. +....+.++.+|.+.+++++..... ..++...+..+...|.
T Consensus 1131 -AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le 1206 (1630)
T 1xi4_A 1131 -ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCY 1206 (1630)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHH
Confidence 367778888888888888888888888776653 3334556888888888888544443 3456667777888888
Q ss_pred hcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHHhHHc
Q 006955 250 RNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKES 329 (624)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 329 (624)
..|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++.. +..+|..+..+|...|++..|......
T Consensus 1207 ~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~--n~~aWkev~~acve~~Ef~LA~~cgl~---- 1275 (1630)
T 1xi4_A 1207 DEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH---- 1275 (1630)
T ss_pred hcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC--CHHHHHHHHHHHhhhhHHHHHHHHHHh----
Confidence 888888888888764 478888888888888888888888763 456677666677777776666655432
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHh--hCCHHHHHHHhccCC-C-------C
Q 006955 330 GPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYAR--CGNIQSALLEFSSVP-I-------H 399 (624)
Q Consensus 330 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~-~-------~ 399 (624)
+..+...+..++..|.+.|.+++|..+++...... +-....++-+..+|++ -+++.++.+.|..-. . .
T Consensus 1276 -Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e 1353 (1630)
T 1xi4_A 1276 -IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE 1353 (1630)
T ss_pred -hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHH
Confidence 23344455566666677777777777776555433 3334445445455444 234445555554332 1 1
Q ss_pred CchhHHHHHHHHHHcCChHHHH
Q 006955 400 DIISWNSIICGLAYHGYAEKAL 421 (624)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~a~ 421 (624)
+...|.-+...|.+.|+++.|.
T Consensus 1354 ~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1354 QAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHhcccHHHHH
Confidence 3445666666666666666666
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1.9e-18 Score=170.10 Aligned_cols=302 Identities=12% Similarity=0.032 Sum_probs=220.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhh
Q 006955 238 EKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLG 311 (624)
Q Consensus 238 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 311 (624)
+..+..+...+...|++++|...++++. +.+..++..+...+...|++++|...|+++.. .+...|..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 3456667777888888888888887776 55566777777788888888888888877643 24566777777777
Q ss_pred cCCCchHHHHHHHHhHHcCCCC---CH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHH
Q 006955 312 ENDLGEEGLKFFVQMKESGPSP---DN-ATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387 (624)
Q Consensus 312 ~~~~~~~a~~~~~~m~~~~~~p---~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (624)
..|++++|...|++..+. .| +. ..+..+.... . ......+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 888888888888777654 44 22 2222221100 0 001122456677778888
Q ss_pred HHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 388 SALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 388 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
+|+..++++. +.++..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888877765 4466778888888888889999998888888742 33456777888888888899999988888887
Q ss_pred hcCCCC-CcchHH------------HHHHHhhccCChHHHHHHHHHcccCCCCcC-HH----HHHHHHHHHHhcCChHHH
Q 006955 465 KYFLQP-RSAHYT------------CVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PT----VWGALLGACRIHNNIKVG 526 (624)
Q Consensus 465 ~~~~~p-~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~----~~~~l~~~~~~~g~~~~a 526 (624)
. .| +...+. .+...+.+.|++++|.+.++++.+. .|+ +. .+..+..++...|++++|
T Consensus 217 ~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 217 L---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp H---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred h---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 4 34 333332 2366788899999999999998763 343 32 344567788899999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 527 EIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
...++++.+..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988765
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=1.7e-19 Score=173.79 Aligned_cols=279 Identities=12% Similarity=0.149 Sum_probs=132.9
Q ss_pred CCCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCC--
Q 006955 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGME-- 79 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 79 (624)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 467899999999999554 58999999999999999999999765 566789999999999999999999887666
Q ss_pred CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCC
Q 006955 80 VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREG 159 (624)
Q Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 159 (624)
.+++.+.+.|+.+|.+.|++.++.++++. |+..+|..+...|...|.+++|..+|..+ ..|..++.++.+.|
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLG 162 (449)
T ss_dssp ------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTT
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhc
Confidence 45678899999999999999998887753 78889999999999999999999999987 48999999999999
Q ss_pred ChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcc
Q 006955 160 RIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEK 239 (624)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 239 (624)
++++|++.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|+.+++....-+..
T Consensus 163 ~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 163 EYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp CHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred cHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 999999999988 488999999999999999999977776654 44444567888999999999999999988764322
Q ss_pred ---hHHHHHHHHHh--cCChHHHHHHHhhcC---C-----CCcchhhHHHHHHHhcCChHHHHHHHhhc
Q 006955 240 ---TWNSIISVLIR--NGLVKEAHSYLEKYP---Y-----SNIASWTNVIVGYFEMGEVGSAIKVFELM 295 (624)
Q Consensus 240 ---~~~~ll~~~~~--~~~~~~a~~~~~~~~---~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 295 (624)
.|+-+.-++++ .+++.+..+.|..-. + .+...|..++..|..-++++.|....-.-
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 45555545543 455566666655444 2 46777888888888888888887755443
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=1.6e-18 Score=170.55 Aligned_cols=318 Identities=11% Similarity=0.041 Sum_probs=236.1
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHH
Q 006955 207 LTSWKQLINGLVNSRRIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYF 280 (624)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 280 (624)
+..+..+...+...|++++|+..|+.+.+ | +..++..+...+...|++++|...++++. +.+...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34577888899999999999999999875 3 45688889999999999999999999987 556778999999999
Q ss_pred hcCChHHHHHHHhhcCCCCc------eehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHH
Q 006955 281 EMGEVGSAIKVFELMTTRDV------TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLG 354 (624)
Q Consensus 281 ~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 354 (624)
..|++++|...|+.+...++ ..+..+... . ....+..+...+...|+++.|
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA-----------------D------EMQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHccCHHHH
Confidence 99999999999998865433 223222100 0 001122233344445555555
Q ss_pred HHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006955 355 RQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTD 431 (624)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 431 (624)
...+..+.+.. +.+..++..+...+...|++++|...++++. +.++.+|..+...+...|++++|...+++..+.
T Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~- 217 (359)
T 3ieg_A 140 ITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL- 217 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 55555554442 2334455556666777777777777776554 345667888888888889999999999888873
Q ss_pred CCCChh-hHH------------HHHHHhcccChHHHHHHHHHHhhhhcCCCCC-c----chHHHHHHHhhccCChHHHHH
Q 006955 432 FKPDDI-TFV------------GVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-S----AHYTCVVDLLGRFGLIDEAMN 493 (624)
Q Consensus 432 ~~p~~~-~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~ 493 (624)
.|+.. .+. .+...+...|++++|...++++.+. .|+ . ..+..+...|...|++++|++
T Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 218 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 44432 222 2255688899999999999999874 353 2 235567889999999999999
Q ss_pred HHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006955 494 LLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSC 554 (624)
Q Consensus 494 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 554 (624)
.++++.+.. +.++.++..+..++...|++++|...+++++++.|.++.....+..++...
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999988742 336889999999999999999999999999999999988888887776543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=6.3e-18 Score=164.26 Aligned_cols=288 Identities=10% Similarity=0.010 Sum_probs=203.5
Q ss_pred CCcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHH
Q 006955 267 SNIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLT 343 (624)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 343 (624)
.+..++..++..+...|++++|..+|+.+.. .+...+..++..+...|++++|..+++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444455555555555556666655555532 133344445555666666666666666665542 223445555556
Q ss_pred HHcCCC-CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHH
Q 006955 344 ICSDLP-TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEK 419 (624)
Q Consensus 344 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 419 (624)
.+...| +++.|...+..+.+.. +.+...+..+...+...|++++|+..++++. +.+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 666666 6666666666666543 2345556667777778888888888777665 3345677778888899999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcC-------CCCCcchHHHHHHHhhccCChHHHH
Q 006955 420 ALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF-------LQPRSAHYTCVVDLLGRFGLIDEAM 492 (624)
Q Consensus 420 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~ 492 (624)
|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...|...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999988742 33456778888888899999999999988876421 0224678889999999999999999
Q ss_pred HHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH-HhcCChH
Q 006955 493 NLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY-LSCGRRE 558 (624)
Q Consensus 493 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 558 (624)
+.++++.+.. +.++..+..+..++...|++++|...+++++++.|.++..+..++.++ ...|+.+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999988742 335778888999999999999999999999999999999999999988 4556554
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.8e-17 Score=159.69 Aligned_cols=276 Identities=14% Similarity=0.165 Sum_probs=135.9
Q ss_pred HhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCC
Q 006955 32 FKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPL 111 (624)
Q Consensus 32 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 111 (624)
-+.|++++|.++++++..| .+|+.++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|++.++..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3678899999999999655 48999999999999999999999764 6888999999999999999999998877765
Q ss_pred --CCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHc
Q 006955 112 --KDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDN 189 (624)
Q Consensus 112 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (624)
+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.
T Consensus 90 ~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~L 161 (449)
T 1b89_A 90 KARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHL 161 (449)
T ss_dssp -------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTT
T ss_pred hCccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHh
Confidence 567888999999999999999888875 477789999999999999999999999977 5899999999999
Q ss_pred CChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCC--
Q 006955 190 GCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYS-- 267 (624)
Q Consensus 190 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 267 (624)
|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|.++++..+++.....
T Consensus 162 g~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ 238 (449)
T 1b89_A 162 GEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLER 238 (449)
T ss_dssp TCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred ccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH
Confidence 9999999999999 478899999999999999999988887765 44444567888999999999999999998833
Q ss_pred -CcchhhHHHHHHHh--cCChHHHHHHHhhcCC--------CCceehhhhhhHhhcCCCchHHHHH
Q 006955 268 -NIASWTNVIVGYFE--MGEVGSAIKVFELMTT--------RDVTVWNVMIFGLGENDLGEEGLKF 322 (624)
Q Consensus 268 -~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (624)
....|+-+.-+|++ -+++.+.++.|..-.. .+...|..+...|...++++.|...
T Consensus 239 ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 239 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 34456777666765 3456666666653332 2577899999999999999998874
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=3.2e-18 Score=169.25 Aligned_cols=293 Identities=10% Similarity=-0.008 Sum_probs=191.3
Q ss_pred hcCChHHHHH-HHhhcC---CC----CcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhhcCCCchH
Q 006955 250 RNGLVKEAHS-YLEKYP---YS----NIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLGENDLGEE 318 (624)
Q Consensus 250 ~~~~~~~a~~-~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 318 (624)
..|++++|.. .+.+.. +. +...+..+...+.+.|++++|...|+++.+ .+..+|..+..++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3455666665 555444 11 133455555666666666666666655532 234455555555666666666
Q ss_pred HHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC
Q 006955 319 GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI 398 (624)
Q Consensus 319 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (624)
|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+...... ..+..+.. ... ...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~-------~~~-------~~~ 180 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA-HLVTPAEE-------GAG-------GAG 180 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-GGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH-------Hhh-------hhc
Confidence 666666555542 22444555555555555555555555555555332111 11100000 000 000
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-Ccch
Q 006955 399 HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD---DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAH 474 (624)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 474 (624)
+ ...+.. +..+...|++++|...++++.+. .|+ ..++..+...+...|++++|...++++.+. .| +...
T Consensus 181 ~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~ 253 (368)
T 1fch_A 181 L-GPSKRI-LGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLL 253 (368)
T ss_dssp ------CT-THHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred c-cHHHHH-HHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHH
Confidence 0 001112 23333889999999999999884 444 678888899999999999999999999874 35 6788
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-----------Cch
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN-----------SGV 543 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~ 543 (624)
+..++..|...|++++|++.++++.+.. +.++..+..+..++...|++++|...+++++++.|.+ +.+
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 9999999999999999999999988742 3457899999999999999999999999999988877 788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 006955 544 YLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
+..++.+|...|++++|..++.+
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999999999999998764
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1.6e-16 Score=163.23 Aligned_cols=365 Identities=9% Similarity=-0.009 Sum_probs=244.5
Q ss_pred CChhHHHHHHHHHHh----CCChHHHHHHhccCCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHcccC-CcccHHH
Q 006955 143 RDVASWTIMVNGLVR----EGRIVEARKLFDKMPA-KDVQAWNLMIAGYLD----NGCVGVAEDLFQKMHDR-DLTSWKQ 212 (624)
Q Consensus 143 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ 212 (624)
.++..+..+...|.. .+++++|...|+...+ .++..+..|...|.. .+++++|.+.|++..+. +...+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 466666666666666 6777777777766543 356666667777766 66777777777766553 3334555
Q ss_pred HHHHHHc----CCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHh----cCC
Q 006955 213 LINGLVN----SRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFE----MGE 284 (624)
Q Consensus 213 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 284 (624)
|...|.. .+++++|++.|+...++ .++..+..+...|.. .++
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------------------------~~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQ------------------------------GRDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHcCCCCCCC
Confidence 5555555 55666666666554432 222333344444443 445
Q ss_pred hHHHHHHHhhcCC-CCceehhhhhhHhhc----CCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcC----CCCcHHHH
Q 006955 285 VGSAIKVFELMTT-RDVTVWNVMIFGLGE----NDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSD----LPTLDLGR 355 (624)
Q Consensus 285 ~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~ 355 (624)
.++|...|++..+ .+...+..+...|.. .+++++|...|++..+.| +...+..+...+.. .++.++|.
T Consensus 167 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 167 YVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 5555555554432 244455555555554 566777777777666543 33344444444443 56777777
Q ss_pred HHHHHHHHhCCCCCcchhHHHHHHhHh----hCCHHHHHHHhccCC-CCCchhHHHHHHHHHHc-----CChHHHHHHHH
Q 006955 356 QIHAQAIKIARNQFTTVSNAMITMYAR----CGNIQSALLEFSSVP-IHDIISWNSIICGLAYH-----GYAEKALELFE 425 (624)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~ 425 (624)
..++...+.| +...+..+..+|.. .++.++|+..|++.. ..++..+..+...|... +++++|...++
T Consensus 244 ~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 244 VLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 7777666543 23344456666666 788888888888765 34566777788888877 89999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHhcccC---hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChHHHHHHHHHc
Q 006955 426 RMRLTDFKPDDITFVGVLSACSYAG---LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLIDEAMNLLNEI 498 (624)
Q Consensus 426 ~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 498 (624)
+..+.| +...+..+...+...| +.++|.+++++..+. .++..+..|...|.. .+++++|.+++++.
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 998865 3456666666666656 889999999998874 367788888888888 89999999999998
Q ss_pred ccCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCC---CCchHHHHHHHHHh
Q 006955 499 RADGIEVSPTVWGALLGACRI----HNNIKVGEIAGERVMELEPN---NSGVYLILTEMYLS 553 (624)
Q Consensus 499 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 553 (624)
.+.| ++..+..|...|.. .++.++|...++++.+..|+ ++.....|+.++..
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 8754 56778888888877 89999999999999998854 66667777666554
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.1e-17 Score=160.56 Aligned_cols=267 Identities=11% Similarity=-0.010 Sum_probs=227.9
Q ss_pred CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHH
Q 006955 298 RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMI 377 (624)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 377 (624)
.++..+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366677788888999999999999999998763 3334455567778888999999999999998864 44667788899
Q ss_pred HHhHhhC-CHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHH
Q 006955 378 TMYARCG-NIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVD 453 (624)
Q Consensus 378 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 453 (624)
..+...| ++++|...|++.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999998865 4467789999999999999999999999999852 334567777888999999999
Q ss_pred HHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCC--------CCcCHHHHHHHHHHHHhcCChH
Q 006955 454 QGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG--------IEVSPTVWGALLGACRIHNNIK 524 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------~~p~~~~~~~l~~~~~~~g~~~ 524 (624)
+|...++++.+. .| +...+..+...|...|++++|.+.++++.+.. .+..+.++..+..++...|+++
T Consensus 177 ~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999874 35 67889999999999999999999999876521 1234578899999999999999
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 525 VGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 525 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+|...++++++..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999876543
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=5.3e-16 Score=161.08 Aligned_cols=401 Identities=12% Similarity=0.119 Sum_probs=258.3
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHcccC--CcccHHHHHHHH-
Q 006955 144 DVASWTIMVNGLVREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR--DLTSWKQLINGL- 217 (624)
Q Consensus 144 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~- 217 (624)
|...|..++. +...|++++|..+|+.+.+ .+...|..++..+.+.|++++|..+|+++... ++..|..++...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5667777776 3667788888888877763 25567777777777888888888888887763 333344444322
Q ss_pred HcCCCHHHHHH----HhhhCCC------CCcchHHHHHHHHHh---------cCChHHHHHHHhhcCC-CCc---chhhH
Q 006955 218 VNSRRIDAAIS----YFKQMPE------TCEKTWNSIISVLIR---------NGLVKEAHSYLEKYPY-SNI---ASWTN 274 (624)
Q Consensus 218 ~~~~~~~~A~~----~~~~~~~------~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~-~~~---~~~~~ 274 (624)
...|+.++|.+ +|+.... ++...|...+....+ .|+++.|..+|+++.. |.. ..|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 23455554443 4443321 122344444444333 4555555555555552 111 01111
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHHhH------HcC---CCCCH--------HH
Q 006955 275 VIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMK------ESG---PSPDN--------AT 337 (624)
Q Consensus 275 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~--------~~ 337 (624)
........|. ..+..++. ...+++..|..++.++. +.. ++|+. ..
T Consensus 171 ~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 171 YNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 1110000000 00000000 12345566666665521 111 24431 23
Q ss_pred HHHHHHHHcC----CCCc----HHHHHHHHHHHHhCCCCCcchhHHHHHHhHh-------hCCHH-------HHHHHhcc
Q 006955 338 FTSVLTICSD----LPTL----DLGRQIHAQAIKIARNQFTTVSNAMITMYAR-------CGNIQ-------SALLEFSS 395 (624)
Q Consensus 338 ~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~ 395 (624)
|...+..... .++. +.+..+++.+.... +.++.++..++..+.+ .|+++ +|..+|++
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 3333322211 2333 36667888877763 4566777777777765 68877 89999987
Q ss_pred CC----CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCC
Q 006955 396 VP----IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQ 469 (624)
Q Consensus 396 ~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 469 (624)
.. +.+...|..++..+...|++++|..+|+++.+ +.|+. ..|..++..+.+.|+.++|+.+|++..+. .
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~ 386 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---A 386 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---T
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---c
Confidence 65 23577899999999999999999999999998 46654 47888888888899999999999999874 3
Q ss_pred C-CcchHHHHHHH-hhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc----
Q 006955 470 P-RSAHYTCVVDL-LGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG---- 542 (624)
Q Consensus 470 p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---- 542 (624)
| +...|...+.. +...|+.++|.++|++..+. .| ++..|..++..+...|+.++|..+|++++...|.++.
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 4 33334333322 33689999999999998873 45 5889999999999999999999999999998876665
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 543 VYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.+...+......|+.+.+..+.+++.+.-
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67778888889999999999999987753
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1.6e-16 Score=150.31 Aligned_cols=243 Identities=10% Similarity=-0.035 Sum_probs=174.7
Q ss_pred hhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC-CCCcchhHHHHHHhHhhC
Q 006955 306 MIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIAR-NQFTTVSNAMITMYARCG 384 (624)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 384 (624)
+..+|...|+++.|+..++.. -+|+..++..+...+...++.+.|...++.+...+. |.+...+..+..++...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 344455555555555433321 234444555555555555555555555555555443 223344455678888999
Q ss_pred CHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH---HHHHHhcccChHHHHHHHHHH
Q 006955 385 NIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV---GVLSACSYAGLVDQGRYYFDC 461 (624)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~ 461 (624)
++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.+. .|+..... ..+..+...|++++|..+|++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999998 567788999999999999999999999999985 56653221 233444566999999999999
Q ss_pred hhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHH-HHHHHHHHHccCCC
Q 006955 462 MKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKV-GEIAGERVMELEPN 539 (624)
Q Consensus 462 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~ 539 (624)
+.+. .+.++..++.+..++.+.|++++|.+.++++.+. .| ++.++..++..+...|+..+ +.+++++++++.|.
T Consensus 192 ~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 192 MADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 9985 3347888999999999999999999999998874 45 68899999999999999876 67899999999998
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHH
Q 006955 540 NSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
++.+.. ...+.+.++++..-|
T Consensus 268 ~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 268 HPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp CHHHHH----HHHHHHHHHHHHHHH
T ss_pred ChHHHH----HHHHHHHHHHHHHHc
Confidence 876543 344555555555433
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=1.6e-15 Score=155.82 Aligned_cols=351 Identities=14% Similarity=0.030 Sum_probs=263.9
Q ss_pred CChhHHHHHHHHHHH----cCChhHHHHHHHHcccC-CcccHHHHHHHHHc----CCCHHHHHHHhhhCCCCCcchHHHH
Q 006955 174 KDVQAWNLMIAGYLD----NGCVGVAEDLFQKMHDR-DLTSWKQLINGLVN----SRRIDAAISYFKQMPETCEKTWNSI 244 (624)
Q Consensus 174 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~l 244 (624)
.++.++..+...|.. .+++++|+..|++..+. +...+..|...|.. .+++++|+++|++..+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--------- 107 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL--------- 107 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---------
Confidence 355666666666665 56666666666665443 23344444444444 4445555544444332
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHh----cCChHHHHHHHhhcCCC-CceehhhhhhHhhc----CCC
Q 006955 245 ISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFE----MGEVGSAIKVFELMTTR-DVTVWNVMIFGLGE----NDL 315 (624)
Q Consensus 245 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~ 315 (624)
..++..+..|...|.. .+++++|...|++.... ++..+..+...|.. .++
T Consensus 108 ---------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 108 ---------------------KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred ---------------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 2334445556666666 67788888888776543 56667777777776 789
Q ss_pred chHHHHHHHHhHHcCCCCCHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHh----hCCHH
Q 006955 316 GEEGLKFFVQMKESGPSPDNATFTSVLTICSD----LPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYAR----CGNIQ 387 (624)
Q Consensus 316 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 387 (624)
+++|++.|++..+.| +...+..+...+.. .++.++|...+....+.| ++.....+...|.. .++.+
T Consensus 167 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999999998864 55666667777765 799999999999998865 44566677778876 78999
Q ss_pred HHHHHhccCC-CCCchhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhccc-----ChHHHHHH
Q 006955 388 SALLEFSSVP-IHDIISWNSIICGLAY----HGYAEKALELFERMRLTDFKPDDITFVGVLSACSYA-----GLVDQGRY 457 (624)
Q Consensus 388 ~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~ 457 (624)
+|..+|++.. ..++..+..+...|.. .+++++|..+|++..+.| +...+..+...+... ++.++|..
T Consensus 241 ~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 241 QSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 9999999876 4466677788888887 899999999999998764 445666666666665 89999999
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHhhccC---ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCChHHHHHHH
Q 006955 458 YFDCMKNKYFLQPRSAHYTCVVDLLGRFG---LIDEAMNLLNEIRADGIEVSPTVWGALLGACRI----HNNIKVGEIAG 530 (624)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~ 530 (624)
++++..+. .++..+..+...|...| +.++|++++++..+. .++..+..|...|.. .+++++|...+
T Consensus 318 ~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 318 WYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998874 24567778888887766 889999999999875 367788888888887 89999999999
Q ss_pred HHHHccCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 006955 531 ERVMELEPNNSGVYLILTEMYLS----CGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 531 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 572 (624)
+++.+.. ++..+..|+.+|.. .+++++|...+++..+.+.
T Consensus 391 ~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 391 RKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9998864 67899999999998 8999999999999988873
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=5.1e-16 Score=146.86 Aligned_cols=248 Identities=9% Similarity=0.026 Sum_probs=202.5
Q ss_pred hHhhcCCCchHHHHHHHHhHHcCCCCCH--HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCC
Q 006955 308 FGLGENDLGEEGLKFFVQMKESGPSPDN--ATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN 385 (624)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (624)
......|++..|+..++..... .|+. .....+..++...|+++.|...++. .-+|+...+..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3456678999999988776443 4554 3445677899999999999876644 245566777888999999999
Q ss_pred HHHHHHHhccCC-----CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 386 IQSALLEFSSVP-----IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 386 ~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
.++|++.++++. +.++..+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999998764 23566777788899999999999999987 4566788888999999999999999999
Q ss_pred HhhhhcCCCCCcchH---HHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 461 CMKNKYFLQPRSAHY---TCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 461 ~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
++.+. .|+.... ..++..+...|++++|..+|+++.+. .+.++..++.+..++...|++++|+..++++++.+
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99874 4654322 22345555669999999999999886 35678899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHH-HHHHHHHHHHCC
Q 006955 538 PNNSGVYLILTEMYLSCGRRED-AKRIFAQMKENG 571 (624)
Q Consensus 538 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 571 (624)
|.++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999976 568988887753
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=3.9e-17 Score=161.36 Aligned_cols=289 Identities=10% Similarity=0.005 Sum_probs=191.4
Q ss_pred HhcCChHHHHH-HHhhcCCC-------CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCc
Q 006955 280 FEMGEVGSAIK-VFELMTTR-------DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTL 351 (624)
Q Consensus 280 ~~~g~~~~A~~-~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 351 (624)
...|++++|.. .|++.... +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 33456666665 55544321 23445555666666666666666666665542 22333444444444444444
Q ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006955 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTD 431 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 431 (624)
+.|...+..+.+.. +.+..++..+...|...|++++|...++++.+.
T Consensus 115 ~~A~~~~~~al~~~--------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 161 (368)
T 1fch_A 115 LLAISALRRCLELK--------------------------------PDNQTALMALAVSFTNESLQRQACEILRDWLRY- 161 (368)
T ss_dssp HHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcC--------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 44444444443332 335566777778888888888888888888774
Q ss_pred CCCChh-hHHH---------------HHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHH
Q 006955 432 FKPDDI-TFVG---------------VLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLL 495 (624)
Q Consensus 432 ~~p~~~-~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (624)
.|+.. .+.. .+..+...|++++|...++++.+...-.++..++..+...|...|++++|++.+
T Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 162 -TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp -STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33332 2211 233334889999999999999985321124788899999999999999999999
Q ss_pred HHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccC
Q 006955 496 NEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKE 575 (624)
Q Consensus 496 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 575 (624)
+++.+.. +.++.++..+..++...|++++|...++++++..|.++..+..++.+|...|++++|.+.++++.+.....
T Consensus 241 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~- 318 (368)
T 1fch_A 241 TAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS- 318 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-
Confidence 9988742 34578999999999999999999999999999999999999999999999999999999999987753211
Q ss_pred CceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHHHHHHhhh
Q 006955 576 PGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIEREIL 619 (624)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (624)
.+ . ....+|....++..+..+...+++...
T Consensus 319 ~~-~-------------~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 319 RG-P-------------RGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp --------------------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred CC-c-------------cccccchhhHHHHHHHHHHHHhCChHh
Confidence 00 0 012356667777777777766665443
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=3.7e-17 Score=161.42 Aligned_cols=268 Identities=10% Similarity=-0.011 Sum_probs=182.4
Q ss_pred cchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHH
Q 006955 269 IASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTIC 345 (624)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 345 (624)
...+..+...+.+.|++++|...|+.+.. .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 33455566666666666666666665542 244555566666666666666666666655542 22344455555555
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 006955 346 SDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFE 425 (624)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (624)
...|+++.|...++.+.+..........+ + ......+..+...+...|++++|...++
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKN-K---------------------KGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-----------------------------------------CCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhh-h---------------------ccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 55555555555555544432110000000 0 0012234456778889999999999999
Q ss_pred HHHHCCCCC---ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC
Q 006955 426 RMRLTDFKP---DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD 501 (624)
Q Consensus 426 ~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (624)
++.+. .| +..++..+...+...|++++|...++++.+. .| +..++..+..+|...|++++|++.++++.+.
T Consensus 202 ~al~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 202 EAAHQ--NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HHHHH--SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHh--CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99885 44 4678888999999999999999999999874 35 6888999999999999999999999998874
Q ss_pred CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC------------CCchHHHHHHHHHhcCChHHHHHHHHH
Q 006955 502 GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN------------NSGVYLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 502 g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
.| ++.++..+..+|...|++++|...+++++++.|. +..++..|+.++...|+.+.+..+.++
T Consensus 277 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 277 --QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred --CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 45 5889999999999999999999999999998875 367799999999999999999887754
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.5e-16 Score=160.25 Aligned_cols=366 Identities=12% Similarity=0.037 Sum_probs=190.7
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHcccC------------CcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHH
Q 006955 175 DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR------------DLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWN 242 (624)
Q Consensus 175 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 242 (624)
....|+.|...+...|++++|++.|++..+- ...+|..+..+|...|++++|+..+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~------- 122 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH------- 122 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------
Confidence 3567888888899999999999888876431 123466666666666766666666554432
Q ss_pred HHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhc--CChHHHHHHHhhcCC--C-CceehhhhhhH---h
Q 006955 243 SIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEM--GEVGSAIKVFELMTT--R-DVTVWNVMIFG---L 310 (624)
Q Consensus 243 ~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~ 310 (624)
+..... .....++..+..++... +++++|+..|++... | ++..+..+... +
T Consensus 123 -----------------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 123 -----------------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp -----------------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -----------------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 000000 00111222222222222 234455555544432 1 22223222222 2
Q ss_pred hcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHH----cCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCH
Q 006955 311 GENDLGEEGLKFFVQMKESGPSPDNATFTSVLTIC----SDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNI 386 (624)
Q Consensus 311 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (624)
...++.++|++.+++..+.. +.+...+..+...+ ...++.+.|...++...... +.+..++..+...|...|++
T Consensus 186 ~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 186 DNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEP 263 (472)
T ss_dssp HHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCH
T ss_pred cCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCch
Confidence 23445555555555554432 12222332222222 22344555555555555443 22334445555666666666
Q ss_pred HHHHHHhccCC---CCCchhHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006955 387 QSALLEFSSVP---IHDIISWNSIICGLAY-------------------HGYAEKALELFERMRLTDFKPDDITFVGVLS 444 (624)
Q Consensus 387 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 444 (624)
++|+..+++.. +.+..++..+..+|.. .+.++.|...+++..+.. +.+..++..+..
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~ 342 (472)
T 4g1t_A 264 DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHH
Confidence 66666665544 2233344444433321 223567777888777632 233457777888
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCCCcc----hHHHHHH-HhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQPRSA----HYTCVVD-LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI 519 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 519 (624)
.+...|++++|...|+++.+. .|+.. .+..+.. .+...|+.++|++.+++..+ +.|+.....
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~-------- 409 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKE-------- 409 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHH--------
T ss_pred HHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHH--------
Confidence 888999999999999888763 34322 2223332 23467889999999988876 556543322
Q ss_pred cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEE
Q 006955 520 HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWI 581 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 581 (624)
+....+..++++.++.+|.++.++..|+.+|...|++++|.+.+++..+.+.......+|+
T Consensus 410 -~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 -KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred -HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 2234556777888889999999999999999999999999999999988774433333443
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=1.6e-16 Score=154.01 Aligned_cols=273 Identities=9% Similarity=0.007 Sum_probs=184.3
Q ss_pred chhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHc
Q 006955 270 ASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICS 346 (624)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 346 (624)
..+..+...+...|++++|..+|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3345555566666666666666655532 234455555555666666666666666655542 223444555555555
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHH-HH-HHHHcCChHHHHHHH
Q 006955 347 DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSI-IC-GLAYHGYAEKALELF 424 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~~~~ 424 (624)
..|+++.|...+..+.+..... ...+..+.... ++......+ .. .+...|++++|...+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQY-EQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTT-TTC--------------------------------------CCTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCcc-HHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 5555555555555554432211 11111110000 000001111 22 366778899999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCC
Q 006955 425 ERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGI 503 (624)
Q Consensus 425 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (624)
+++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..+...|...|++++|.+.++++.+..
T Consensus 162 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 162 HAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 9988752 335678888888999999999999999998874 35 67889999999999999999999999988742
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC------------CCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 504 EVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN------------NSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
+.++..+..+..++...|++++|...++++++..|. ++..+..++.+|...|++++|..++++.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345788999999999999999999999999999998 6888999999999999999999988744
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=6.4e-15 Score=152.94 Aligned_cols=402 Identities=12% Similarity=0.104 Sum_probs=279.4
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHHHhccc--C-ChhHHHHHHHHHHhCCChHHHHHHhccCCC--CChhHHHHHHHHH-
Q 006955 113 DVVSWNLVIGALVNCQRMDLAESYFKEMGA--R-DVASWTIMVNGLVREGRIVEARKLFDKMPA--KDVQAWNLMIAGY- 186 (624)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~- 186 (624)
+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|.++|++... |++..|..++...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5567888888 4778999999999999987 3 567889999999999999999999999874 5677777777533
Q ss_pred HHcCChhHHHH----HHHHccc------CCcccHHHHHHHHHc---------CCCHHHHHHHhhhCCC-CCcc---hHHH
Q 006955 187 LDNGCVGVAED----LFQKMHD------RDLTSWKQLINGLVN---------SRRIDAAISYFKQMPE-TCEK---TWNS 243 (624)
Q Consensus 187 ~~~g~~~~A~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~-~~~~---~~~~ 243 (624)
...|+.+.|.+ +|++... .+...|...+..... .|++++|..+|++..+ |... .|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 45688877665 6766643 233456677766554 6889999999999876 3321 2222
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhh-------cC------CCC--------cee
Q 006955 244 IISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFEL-------MT------TRD--------VTV 302 (624)
Q Consensus 244 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~~~--------~~~ 302 (624)
........|. ..+..++. .+.+++..|..++.. +. .|+ ...
T Consensus 171 ~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 171 YNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 2211111111 11111111 012334444443332 11 111 123
Q ss_pred hhhhhhHhhcC----CCc----hHHHHHHHHhHHcCCCCCHHHHHHHHHHHcC-------CCCcH-------HHHHHHHH
Q 006955 303 WNVMIFGLGEN----DLG----EEGLKFFVQMKESGPSPDNATFTSVLTICSD-------LPTLD-------LGRQIHAQ 360 (624)
Q Consensus 303 ~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~ 360 (624)
|...+...... ++. .++..+|++..... +-+...|......+.. .|+++ .|..+++.
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 33333222211 222 36778888877652 3345666666666553 78887 88888888
Q ss_pred HHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC--CC-Cc-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-
Q 006955 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP--IH-DI-ISWNSIICGLAYHGYAEKALELFERMRLTDFKPD- 435 (624)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~- 435 (624)
..+.-.+.+..++..++..+.+.|++++|..+|+++. .| ++ ..|..++..+.+.|++++|..+|++..+. .|+
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~ 389 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTR 389 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCC
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCc
Confidence 8763345567788889999999999999999999876 33 33 47888999899999999999999999874 343
Q ss_pred hhhHHHHHHH-hcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCC-CCcC--HHHH
Q 006955 436 DITFVGVLSA-CSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG-IEVS--PTVW 510 (624)
Q Consensus 436 ~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~ 510 (624)
...+...... +...|+.++|..+|++..+. .| ++..|..++..+.+.|+.++|..+|++....+ ..|+ ...|
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 2333322222 33589999999999999885 36 68889999999999999999999999988753 2332 4488
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 511 GALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
...+......|+.+.+..+..++.+..|.
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 88888888899999999999999998884
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=3.7e-16 Score=154.21 Aligned_cols=236 Identities=8% Similarity=-0.042 Sum_probs=173.6
Q ss_pred ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHH
Q 006955 300 VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITM 379 (624)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (624)
...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...++.+.+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 129 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------------- 129 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 3446666667777777777777777766542 2234444444444444444444444444443321
Q ss_pred hHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----------hhHHHHHHHhcc
Q 006955 380 YARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-----------ITFVGVLSACSY 448 (624)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~ 448 (624)
+.+..+|..+..+|...|++++|+..++++.+. .|+. ..+..+...+..
T Consensus 130 ------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 130 ------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVD 189 (365)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------C
T ss_pred ------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhh
Confidence 234567888888888999999999999988873 3432 122345778899
Q ss_pred cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 528 (624)
.|++++|..+++++.+...-.+++.++..+...|...|++++|++.++++.+.. +.++.+|..+..+|...|++++|..
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999853221257889999999999999999999999988742 4468899999999999999999999
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 529 AGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 529 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.++++++..|.++.++..++.+|...|++++|...++++.+..
T Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998754
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.3e-15 Score=155.90 Aligned_cols=374 Identities=11% Similarity=-0.014 Sum_probs=215.1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHhccCC------------CCChhHHHHHHHHHHHcCChhHHHHHHHHcccC------
Q 006955 144 DVASWTIMVNGLVREGRIVEARKLFDKMP------------AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR------ 205 (624)
Q Consensus 144 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 205 (624)
....|+.|...+...|++++|++.|++.. .....+|+.+..+|...|++++|...+++..+-
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 35678999999999999999999987653 124568999999999999999999999887531
Q ss_pred -----CcccHHHHHHHHHc--CCCHHHHHHHhhhCCC--CCc-chHHHHHHH---HHhcCChHHHHHHHhhcC---CCCc
Q 006955 206 -----DLTSWKQLINGLVN--SRRIDAAISYFKQMPE--TCE-KTWNSIISV---LIRNGLVKEAHSYLEKYP---YSNI 269 (624)
Q Consensus 206 -----~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~--~~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~---~~~~ 269 (624)
...++..+..++.. .+++++|++.|++..+ |+. ..+..+..+ +...++.++|.+.++++. +.+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 11234444444443 4568888888887764 432 333333333 334566666776666655 4444
Q ss_pred chhhHHHHHHHh----cCChHHHHHHHhhcCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-HHHHHHH
Q 006955 270 ASWTNVIVGYFE----MGEVGSAIKVFELMTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-NATFTSV 341 (624)
Q Consensus 270 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l 341 (624)
.++..+...+.. .|+.++|.+.+++... .+..++..+...|...|++++|+..+++..+. .|+ ...+..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 445544444433 3456667777665532 24455666667777777777777777776654 333 3333333
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChH
Q 006955 342 LTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAE 418 (624)
Q Consensus 342 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 418 (624)
..++...+ . ..... . ...........+..+.|...+++.. +.+..++..+...|...|+++
T Consensus 288 g~~y~~~~-----~----~~~~~-~------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKV-----F----QVMNL-R------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHH-----H----HHHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHH-----H----HhhhH-H------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 33221100 0 00000 0 0001111112234566777776654 456678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChh--hHHHHHH-HhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHH
Q 006955 419 KALELFERMRLTDFKPDDI--TFVGVLS-ACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLL 495 (624)
Q Consensus 419 ~a~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (624)
+|+..|++..+....|... .+..+.. .....|+.++|+..+++..+ +.|+...... ....+.+++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~---------~~~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEK---------MKDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHH---------HHHHHHHHH
Confidence 9999999998853333221 2222222 34577999999999999887 5565433222 223445566
Q ss_pred HHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 496 NEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 496 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
++..+.. +.++.+|..|..+|...|++++|+..|++++++.|.+|.....++
T Consensus 420 ~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 6655432 446789999999999999999999999999999998888776654
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=6.8e-16 Score=139.46 Aligned_cols=195 Identities=15% Similarity=0.063 Sum_probs=159.1
Q ss_pred CCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHH
Q 006955 367 NQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGV 442 (624)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l 442 (624)
|++...+..+...+.+.|++++|+..|++.. +.++..|..+..++...|++++|+..+++..+. .|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4566677778888889999999999998765 446778899999999999999999999999984 5654 677888
Q ss_pred HHHhccc-----------ChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHH
Q 006955 443 LSACSYA-----------GLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVW 510 (624)
Q Consensus 443 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 510 (624)
..++... |++++|...+++..+. .| +...+..+..+|...|++++|+..|+++.+.. .++..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 8888888 9999999999999984 57 67889999999999999999999999998866 788899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 511 GALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
..+..++...|++++|...++++++..|.++..+..++.++...|++++|.+.+++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999987653
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=2.3e-15 Score=145.85 Aligned_cols=272 Identities=11% Similarity=0.006 Sum_probs=207.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHh
Q 006955 237 CEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGL 310 (624)
Q Consensus 237 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 310 (624)
+...+......+...|++++|..+++++. +.+...+..+...+...|++++|...|+++.. .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 44567888899999999999999999987 56677888999999999999999999998753 3667888899999
Q ss_pred hcCCCchHHHHHHHHhHHcCCCCCHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHH-HH-HhHhhCCHH
Q 006955 311 GENDLGEEGLKFFVQMKESGPSPDNA-TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAM-IT-MYARCGNIQ 387 (624)
Q Consensus 311 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~ 387 (624)
...|++++|...++++.+. .|+.. .+..+... .++......+ .. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS--QPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT--STTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 9999999999999999876 33322 12111100 0111111122 12 366677777
Q ss_pred HHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 388 SALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 388 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
+|...++++. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777655 3456778888888999999999999999988742 33456788888889999999999999999887
Q ss_pred hcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-------------HHHHHHHHHHHHhcCChHHHHHHH
Q 006955 465 KYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-------------PTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 465 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
. .| +...+..+...|...|++++|.+.++++.+. .|+ +..|..+..++...|++++|...+
T Consensus 235 ~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 235 I---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp H---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred c---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4 35 6778889999999999999999999988763 343 678888999999999999999998
Q ss_pred HHHHccCC
Q 006955 531 ERVMELEP 538 (624)
Q Consensus 531 ~~~~~~~p 538 (624)
+++++..|
T Consensus 310 ~~~l~~~~ 317 (327)
T 3cv0_A 310 AQNVEPFA 317 (327)
T ss_dssp TCCSHHHH
T ss_pred HHHHHhcc
Confidence 87776544
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.9e-15 Score=137.53 Aligned_cols=217 Identities=10% Similarity=-0.004 Sum_probs=164.3
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC--C----C----chhHHHHHH
Q 006955 340 SVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI--H----D----IISWNSIIC 409 (624)
Q Consensus 340 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l~~ 409 (624)
.+...+...|+++.|..++..+.+.. .+...+..+..+|...|++++|+..+++... | + +.+|..+..
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 33334444444444444444444443 3344444455555555555555555554431 1 1 457888889
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCCh
Q 006955 410 GLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLI 488 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 488 (624)
.+...|++++|...++++.+ ..|+.. .+...|++++|...++++... .| +...+..+...+...|++
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCH
Confidence 99999999999999999988 456533 355668899999999998873 45 677888999999999999
Q ss_pred HHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 489 DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 489 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
++|++.++++.+.. +.++.++..+..++...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++..
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999988743 44688899999999999999999999999999999999999999999999999999999999987
Q ss_pred HCC
Q 006955 569 ENG 571 (624)
Q Consensus 569 ~~~ 571 (624)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 653
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=2.3e-14 Score=134.99 Aligned_cols=247 Identities=15% Similarity=-0.035 Sum_probs=195.7
Q ss_pred hhHhhcCCCchHHHHHHHHhHHcCCC--C-CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh
Q 006955 307 IFGLGENDLGEEGLKFFVQMKESGPS--P-DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC 383 (624)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~m~~~~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (624)
.......|++++|+..|+++.+.... | +...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHc
Confidence 33455678899999999998876321 1 34567778888889999999999999988875 34567788899999999
Q ss_pred CCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 384 GNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 384 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
|++++|+..|+++. +.+..+|..+...|...|++++|...++++.+ ..|+.......+..+...|++++|...++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999998876 44678899999999999999999999999998 46666655555566677799999999998
Q ss_pred HhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 461 CMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-----PTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 461 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
+.... .+++...+ .++..+...++.++|.+.+++..+. .|+ ..++..+..++...|++++|...++++++
T Consensus 169 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 169 QHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88875 23344444 4777888888999999999998863 332 56888899999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 006955 536 LEPNNSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 536 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
..|.+...+ ..++...|++++|.+.+
T Consensus 244 ~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 NNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred CCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 999765443 66788889999988776
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.2e-14 Score=135.30 Aligned_cols=233 Identities=9% Similarity=-0.044 Sum_probs=170.2
Q ss_pred hhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCC--C----cchhHHH
Q 006955 303 WNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQ--F----TTVSNAM 376 (624)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~l 376 (624)
|..+...+...|++++|+..|++..+.. ++...+..+..++...|+++.|...+..+.+..... + ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4445555666666666666666665554 555566666666666666666666666655543221 1 3556667
Q ss_pred HHHhHhhCCHHHHHHHhccCC--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHH
Q 006955 377 ITMYARCGNIQSALLEFSSVP--IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVD 453 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 453 (624)
...|...|++++|...|++.. .|+ ...+...|++++|...++++... .|+ ...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHH
Confidence 777777777777777777665 233 23466678889999999998873 444 357777888899999999
Q ss_pred HHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 454 QGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERV 533 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 533 (624)
+|...++++.+.. +.+...+..+...|...|++++|++.++++.+.. +.++..+..+..++...|++++|...++++
T Consensus 157 ~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 157 NAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998742 2367888999999999999999999999988742 345788999999999999999999999999
Q ss_pred HccC------CCCCchHHHHHH
Q 006955 534 MELE------PNNSGVYLILTE 549 (624)
Q Consensus 534 ~~~~------p~~~~~~~~l~~ 549 (624)
+++. |.+...+..+..
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHHH
Confidence 9988 766666665554
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.59 E-value=7.2e-16 Score=160.52 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRL---TDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCV 478 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (624)
.+||++|++|++.|+.++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+. |+.||..+|+++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHHH
Confidence 5899999999999999999999988764 578999999999999999999999999999999876 799999999999
Q ss_pred HHHhhccCCh-HHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCC-----CCchHHHHHHHH
Q 006955 479 VDLLGRFGLI-DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME-LEPN-----NSGVYLILTEMY 551 (624)
Q Consensus 479 ~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~-----~~~~~~~l~~~~ 551 (624)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++.. ..|+ ...+...|-+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999975 78899999999999999999999888655433 22333333321 2221 123444566667
Q ss_pred HhcC
Q 006955 552 LSCG 555 (624)
Q Consensus 552 ~~~g 555 (624)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 7655
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.59 E-value=5.2e-16 Score=161.59 Aligned_cols=147 Identities=9% Similarity=0.063 Sum_probs=124.6
Q ss_pred cchhhHHHHHHHhcCChHHHHHHHhhcC-------CCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHH
Q 006955 269 IASWTNVIVGYFEMGEVGSAIKVFELMT-------TRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSV 341 (624)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 341 (624)
..+|+++|++||+.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3469999999999999999999997653 579999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCc-HHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC-----CchhHHHHHHHHHHcC
Q 006955 342 LTICSDLPTL-DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH-----DIISWNSIICGLAYHG 415 (624)
Q Consensus 342 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 415 (624)
|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++......+ .+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999998888876666666665555421 2344555666666544
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=2.8e-14 Score=134.18 Aligned_cols=176 Identities=11% Similarity=0.003 Sum_probs=104.5
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhccc
Q 006955 374 NAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYA 449 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 449 (624)
..+...|...|++++|+..|++.. +.+..+|..+...|...|++++|...+++..+. .|+. ..+..+...+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHH
Confidence 334444555555555555554443 234456666666677777777777777766653 3433 3444444233344
Q ss_pred ChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCC---hHHHHHHHHHcccCC-CCcC------HHHHHHHHHHHH
Q 006955 450 GLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGL---IDEAMNLLNEIRADG-IEVS------PTVWGALLGACR 518 (624)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g-~~p~------~~~~~~l~~~~~ 518 (624)
+++++|...++++.+. .| +...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..+...|.
T Consensus 156 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 156 KEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 5777777777777663 34 45566666677766666 666777776655421 1133 246666777778
Q ss_pred hcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006955 519 IHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSC 554 (624)
Q Consensus 519 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 554 (624)
..|++++|...++++++++|.++.+...+.......
T Consensus 233 ~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 888888888888888888887777777666555444
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=5.8e-14 Score=141.87 Aligned_cols=379 Identities=11% Similarity=0.012 Sum_probs=188.1
Q ss_pred HHHHHHcCCChHHHHHHHHhcccC-ChhHHHHHHHHHHhCCCh---HHHHHHhccCCCCChhHHHHHHHHHHHcC-----
Q 006955 120 VIGALVNCQRMDLAESYFKEMGAR-DVASWTIMVNGLVREGRI---VEARKLFDKMPAKDVQAWNLMIAGYLDNG----- 190 (624)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g----- 190 (624)
+...+.+.|++++|.++|++..++ ++..+..|...|...|+. ++|.+.|+...+.++..+..|...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 444555566666666666666542 444444555555555555 66666666665555555555555444443
Q ss_pred ChhHHHHHHHHcccCC-cccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC-CCC
Q 006955 191 CVGVAEDLFQKMHDRD-LTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYP-YSN 268 (624)
Q Consensus 191 ~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~ 268 (624)
++++|+..|++..+++ ...+..|...|...+..+++.+ +.+.+.... ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~----------------------------a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVN----------------------------AQQQISQWQAAGY 140 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCC----------------------------HHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHH----------------------------HHHHHHHHHHCCC
Confidence 4556666666655432 2344444444443332221111 111111111 122
Q ss_pred cchhhHHHHHHHhcCC----hHHHHHHHhhcCCCCceehhhhhhHhhcCC---CchHHHHHHHHhHHcCCCCCHHHHHHH
Q 006955 269 IASWTNVIVGYFEMGE----VGSAIKVFELMTTRDVTVWNVMIFGLGEND---LGEEGLKFFVQMKESGPSPDNATFTSV 341 (624)
Q Consensus 269 ~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l 341 (624)
+.....+...|...+. .+.+..+++.....++..+..|...|...| ++++|+..|++..+.| .++...+..+
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 3334444444444442 333444445444445556666666666666 6666666666666654 3333333333
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHH-H--HHcCChH
Q 006955 342 LTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICG-L--AYHGYAE 418 (624)
Q Consensus 342 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~ 418 (624)
...+... ....++.++|...|++..+.++..+..+... + ...++++
T Consensus 220 g~~y~~g-------------------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 220 ARVLGDA-------------------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHTCG-------------------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHH
T ss_pred HHHHhCC-------------------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Confidence 3333222 0011344455555544442244455555555 3 3567788
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhcccC-----hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChH
Q 006955 419 KALELFERMRLTDFKPDDITFVGVLSACSYAG-----LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLID 489 (624)
Q Consensus 419 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 489 (624)
+|..+|++..+.| +...+..+...|. .| +.++|..+|++.. . -++..+..|...|.. ..+.+
T Consensus 269 ~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~~ 339 (452)
T 3e4b_A 269 QMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----REVAADYYLGQIYRRGYLGKVYPQ 339 (452)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----TCHHHHHHHHHHHHTTTTSSCCHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----CCHHHHHHHHHHHHCCCCCCcCHH
Confidence 8888888877765 4455555555554 44 7888888887765 1 255666667766655 34888
Q ss_pred HHHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 490 EAMNLLNEIRADGIEVSPTVWGALLGACRI----HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
+|.++|++..+.|. +.....|...|.. ..|.++|...++++.+..+.+.......+......++..+|..+.+
T Consensus 340 ~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~ 416 (452)
T 3e4b_A 340 KALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQ 416 (452)
T ss_dssp HHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88888888877652 3344455555542 4588888888888887665333322222222233456667777777
Q ss_pred HHHHC
Q 006955 566 QMKEN 570 (624)
Q Consensus 566 ~m~~~ 570 (624)
+.++.
T Consensus 417 ~~~~~ 421 (452)
T 3e4b_A 417 QELAA 421 (452)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66543
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=2.6e-13 Score=125.92 Aligned_cols=196 Identities=10% Similarity=-0.055 Sum_probs=150.2
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhccc
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYA 449 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 449 (624)
+..+...+...|++++|...|+++. +.+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHH
Confidence 3445556666666666666666554 3355677778888888888888888888887742 23456777777888888
Q ss_pred ChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 006955 450 GLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 528 (624)
|++++|..+++++.+ .+..| +...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|..
T Consensus 119 g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888876 22335 56677788888888899999999888877642 3357788888888888899999999
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 529 AGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 529 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.++++.+..|.++..+..++.++...|++++|.++++++.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999888888888888888888889999999999888887654
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=4e-13 Score=135.69 Aligned_cols=343 Identities=11% Similarity=-0.015 Sum_probs=223.7
Q ss_pred HHHHHHHcCCCHHHHHHHhhhCCC-CCcchHHHHHHHHHhcCCh---HHHHHHHhhcCCCCcchhhHHHHHHHhcC----
Q 006955 212 QLINGLVNSRRIDAAISYFKQMPE-TCEKTWNSIISVLIRNGLV---KEAHSYLEKYPYSNIASWTNVIVGYFEMG---- 283 (624)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g---- 283 (624)
.+...+.+.|++++|+++|++..+ .++..+..+...+...|+. ++|...|++....++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 466778889999999999998766 3555666666777777877 89999998888667777888888565555
Q ss_pred -ChHHHHHHHhhcCCC-CceehhhhhhHhhcCCCch---HHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHH
Q 006955 284 -EVGSAIKVFELMTTR-DVTVWNVMIFGLGENDLGE---EGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIH 358 (624)
Q Consensus 284 -~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 358 (624)
+.++|...|++...+ +...+..|...|...+..+ ++.+.+......|. | .....+...+...+.++.+....
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~--~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-P--EAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-T--THHHHHHHHHHHHTCGGGGHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-H--HHHHHHHHHHHcCCCcccCHHHH
Confidence 678899999887654 5567777877777665543 45555555555443 2 23344555555556555555544
Q ss_pred HHHHHhCCCCCcchhHHHHHHhHhhC---CHHHHHHHhccCC---CCCchhHHHHHHHHHHc----CChHHHHHHHHHHH
Q 006955 359 AQAIKIARNQFTTVSNAMITMYARCG---NIQSALLEFSSVP---IHDIISWNSIICGLAYH----GYAEKALELFERMR 428 (624)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~m~ 428 (624)
....+.-...++..+..|..+|...| +.++|+..|++.. .++...+..+...|... +++++|..+|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 44444434445557778888888888 8889999988776 33333446677776554 68899999999987
Q ss_pred HCCCCCChhhHHHHHHH-h--cccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccC-----ChHHHHHHHHHccc
Q 006955 429 LTDFKPDDITFVGVLSA-C--SYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFG-----LIDEAMNLLNEIRA 500 (624)
Q Consensus 429 ~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~ 500 (624)
.| +...+..+... + ...++.++|..+|++..+. -++..+..|...|. .| ++++|+++|++..
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 33 33444445444 3 4588999999999988763 26677777887776 55 9999999999888
Q ss_pred CCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 006955 501 DGIEVSPTVWGALLGACRI----HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLS----CGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 501 ~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 572 (624)
.| ++..+..|...|.. ..++++|...++++.+. .++.....|+.+|.. ..+.++|..+++...+.|.
T Consensus 315 ~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 33 55666677766654 34899999999998774 467888899998885 4589999999998888874
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=3.9e-13 Score=122.15 Aligned_cols=197 Identities=13% Similarity=0.000 Sum_probs=153.3
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
.+..+...+...|++++|...|+++. +.+...|..+...|...|++++|...++++.+.. +.+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 34455666666666666666666554 3355677888888888899999999998888742 3345677778888888
Q ss_pred c-ChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHH
Q 006955 449 A-GLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 449 ~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (624)
. |++++|...++++.+ .+..| +...+..+...+...|++++|++.++++.+.. +.++..+..+..++...|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 8 999999999988887 22334 36677888888999999999999999887632 33577888888889999999999
Q ss_pred HHHHHHHHccCC-CCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 527 EIAGERVMELEP-NNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 527 ~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
...++++.+..| .++..+..++..+...|+.++|..+++.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999888 888888888888899999999999988886543
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1.5e-13 Score=126.69 Aligned_cols=198 Identities=12% Similarity=0.079 Sum_probs=145.7
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
...+..+...+...|++++|...|+++. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 3445556667777777777777777654 3356678888888888999999999999888742 33456777788888
Q ss_pred cccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (624)
...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.++..+..+...+...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999888742 2367778888888999999999999999887642 34677888888888999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 527 EIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
...++++.+..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999888889999999999999999999999887754
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=4.9e-14 Score=132.71 Aligned_cols=229 Identities=11% Similarity=-0.060 Sum_probs=164.3
Q ss_pred CCCChhHHHHHHhhCCCC-------CcchHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhhH
Q 006955 2 RNARIQEAQNLFDKMPQR-------DTVTWNVMIRGYFKNGFLDNAMCLFNQMP---ERDMFTYNTVIAGLMQSDNVQGA 71 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 71 (624)
+.|++++|...|+++.+. ++.++..+...+...|++++|+..|+++. +.+..++..+...+...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 457888888888877752 34567777888888888888888888876 34567888888888888888888
Q ss_pred HHHHhcCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCC--CCcccHHHHHHHHHcCCChHHHHHHHHhccc--CC
Q 006955 72 KEVFDGME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL--KDVVSWNLVIGALVNCQRMDLAESYFKEMGA--RD 144 (624)
Q Consensus 72 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 144 (624)
...|+... +.+..++..+..++...|++++|...|+++.+ |+.......+..+...|++++|...+++... ++
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 88888776 44677888888888888888888888888874 5554444455555666888888888876654 32
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHhccCCCCC-------hhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHH
Q 006955 145 VASWTIMVNGLVREGRIVEARKLFDKMPAKD-------VQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGL 217 (624)
Q Consensus 145 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 217 (624)
......++..+...++.++|.+.++...+.+ ..++..+...|.+.|++++|...|+++.+.++..+.....++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 256 (275)
T 1xnf_A 177 EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYAL 256 (275)
T ss_dssp CSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 2233346666777777788888887776442 366777777888888888888888888776665555555566
Q ss_pred HcCCCHHHHHHHh
Q 006955 218 VNSRRIDAAISYF 230 (624)
Q Consensus 218 ~~~~~~~~A~~~~ 230 (624)
...|++++|++.+
T Consensus 257 ~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 257 LELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHhhHHHH
Confidence 6666666666554
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=1.1e-12 Score=121.65 Aligned_cols=197 Identities=11% Similarity=0.005 Sum_probs=143.5
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHH
Q 006955 344 ICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKA 420 (624)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 420 (624)
.+...|+++.|...++.+.+.. +.+...+..+...|...|++++|.+.++++. +.+...|..+...|...|++++|
T Consensus 46 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 124 (252)
T 2ho1_A 46 GYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124 (252)
T ss_dssp HHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHH
Confidence 3333344444444444333332 1223334445555555566666655555543 33556788888889999999999
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHc
Q 006955 421 LELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEI 498 (624)
Q Consensus 421 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (624)
...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .| +...+..++..|...|++++|...++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999887444554 357777888899999999999999998874 35 6788889999999999999999999998
Q ss_pred ccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 499 RADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 499 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
.+.. +.+...+..+...+...|++++|...++++.+..|.++....
T Consensus 202 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 202 AQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 8742 446778888889999999999999999999999997765543
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=3.6e-12 Score=119.73 Aligned_cols=178 Identities=12% Similarity=-0.021 Sum_probs=131.2
Q ss_pred hCCHHHHHHHhccCC-CCCchhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cChHH
Q 006955 383 CGNIQSALLEFSSVP-IHDIISWNSIICGLAY----HGYAEKALELFERMRLTDFKPDDITFVGVLSACSY----AGLVD 453 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~ 453 (624)
.+++++|...|++.. ..++.++..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .++++
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHH
Confidence 455555555554443 2245566677777777 788888888888887754 55667777777777 78888
Q ss_pred HHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCChHH
Q 006955 454 QGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI----HNNIKV 525 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~ 525 (624)
+|...+++..+.. +...+..+...|.. .+++++|++.+++..+.+ ++..+..+...+.. .+++++
T Consensus 132 ~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 8888888877631 45666677777776 788888888888887643 45667777777877 888888
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 006955 526 GEIAGERVMELEPNNSGVYLILTEMYLS----CGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 526 a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 572 (624)
|...++++.+..| +..+..++.+|.. .|++++|.+.+++..+.|.
T Consensus 205 A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 205 ALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8888888888765 6678888888888 8888888888888877663
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=2e-13 Score=125.89 Aligned_cols=220 Identities=9% Similarity=0.011 Sum_probs=148.3
Q ss_pred CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHH
Q 006955 299 DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMIT 378 (624)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (624)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------- 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD------------- 87 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------
Confidence 34456666667777777777777777766532 2234444444445555555555555554444331
Q ss_pred HhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHH
Q 006955 379 MYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYY 458 (624)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 458 (624)
+.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 88 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 88 -------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred -------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 2345667788888899999999999999988752 33556788888889999999999999
Q ss_pred HHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 459 FDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.++.++..+..++...|++++|...++++++..|
T Consensus 148 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 148 LQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99988742 2367888899999999999999999999988742 34578899999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcC
Q 006955 539 NNSGVYLILTEMYLSCG 555 (624)
Q Consensus 539 ~~~~~~~~l~~~~~~~g 555 (624)
.++..+..+.......|
T Consensus 225 ~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 225 DHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TCHHHHHHHTC------
T ss_pred chHHHHHHHHHHHhhcc
Confidence 98888887766555443
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=1.4e-12 Score=122.37 Aligned_cols=222 Identities=7% Similarity=-0.073 Sum_probs=167.3
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC--CCc----hhHHHHHHHHHHcCC
Q 006955 343 TICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI--HDI----ISWNSIICGLAYHGY 416 (624)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~ 416 (624)
..+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|+..+++... ++. .+|..+...+...|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 34445555555555555554432 22334555566677777777777777665542 222 248889999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHH
Q 006955 417 AEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLL 495 (624)
Q Consensus 417 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (624)
+++|+..+++..+.. +.+...+..+...+...|++++|...++++.+. .| +...+..+...+...+++++|++.+
T Consensus 90 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999842 334468888999999999999999999998873 46 6777777873444456999999999
Q ss_pred HHcccCCCCc-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHccC---CCC-----CchHHHHHHHHHhcCChHHHHHH
Q 006955 496 NEIRADGIEV-SPTVWGALLGACRIHNN---IKVGEIAGERVMELE---PNN-----SGVYLILTEMYLSCGRREDAKRI 563 (624)
Q Consensus 496 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~ 563 (624)
+++.+ ..| +...+..+..++...|+ +++|...++++++.. |.. ..+|..++.+|...|++++|.+.
T Consensus 166 ~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99987 345 47788888888888888 888999999999865 431 25788999999999999999999
Q ss_pred HHHHHHCC
Q 006955 564 FAQMKENG 571 (624)
Q Consensus 564 ~~~m~~~~ 571 (624)
+++..+..
T Consensus 244 ~~~al~~~ 251 (272)
T 3u4t_A 244 WKNILALD 251 (272)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99998764
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.49 E-value=1.1e-12 Score=115.14 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=144.8
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHH
Q 006955 400 DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTC 477 (624)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 477 (624)
++.+|..+...|...|++++|+..|++..+. .|+ ..++..+..++...|++++|...++.+... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 4567888999999999999999999999884 554 467888888999999999999999998874 35 6777888
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 557 (624)
+...+...++++.|.+.+.+..... +.+...+..+..++...|++++|+..++++++.+|.++.++..++.+|...|++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8889999999999999999987732 345778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCC
Q 006955 558 EDAKRIFAQMKENG 571 (624)
Q Consensus 558 ~~A~~~~~~m~~~~ 571 (624)
++|.+.+++..+..
T Consensus 158 ~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 158 DEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999988764
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=8.5e-13 Score=128.99 Aligned_cols=244 Identities=12% Similarity=0.083 Sum_probs=184.2
Q ss_pred eehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhCCCCCcchhHHHHHH
Q 006955 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPT-LDLGRQIHAQAIKIARNQFTTVSNAMITM 379 (624)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (624)
..|+.+...+...|++++|+..+++..+.. +-+...|..+..++...|+ +++|...++.+++.. +.+...+..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 345666666777777888888887777652 2234566666677777775 888888887777765 3355666777888
Q ss_pred hHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcc-cChHHH
Q 006955 380 YARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSY-AGLVDQ 454 (624)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~-~g~~~~ 454 (624)
+...|++++|+..|+++. +.+..+|..+..++...|++++|+..++++.+. .|+ ...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888888888776 456778888999999999999999999999884 554 4678888888877 555466
Q ss_pred H-----HHHHHHhhhhcCCCC-CcchHHHHHHHhhccC--ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC-----
Q 006955 455 G-----RYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFG--LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN----- 521 (624)
Q Consensus 455 a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g----- 521 (624)
| +..++++.+ +.| +...|..+..++...| ++++|++.+.++ +. .+.++..+..+..++...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 6 577888776 457 6778888888888888 689999999888 32 2445778888888887764
Q ss_pred ---C-hHHHHHHHHHH-HccCCCCCchHHHHHHHHHh
Q 006955 522 ---N-IKVGEIAGERV-MELEPNNSGVYLILTEMYLS 553 (624)
Q Consensus 522 ---~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 553 (624)
+ .++|..+++++ .+++|.....|..++..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3 58999999999 89999888888888776654
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=2.2e-12 Score=117.09 Aligned_cols=204 Identities=10% Similarity=-0.015 Sum_probs=148.3
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHc-
Q 006955 339 TSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYH- 414 (624)
Q Consensus 339 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~- 414 (624)
..+...+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...++++. +.+..++..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 333334444444444444444444432 2223344455555666666666666665544 33556788888899999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHH
Q 006955 415 GYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAM 492 (624)
Q Consensus 415 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 492 (624)
|++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .| +...+..++..+...|++++|.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988433444 357778888999999999999999999874 35 5788889999999999999999
Q ss_pred HHHHHcccCCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHH
Q 006955 493 NLLNEIRADGIE-VSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLIL 547 (624)
Q Consensus 493 ~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 547 (624)
+.++++.+.. + .++..+..+...+...|+.+.+..+++.+.+..|.++.....+
T Consensus 168 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 168 YYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999988742 3 4567777777788999999999999999999999777665444
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.46 E-value=5.4e-12 Score=118.55 Aligned_cols=221 Identities=12% Similarity=-0.044 Sum_probs=153.9
Q ss_pred hhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHhCCCCCcchhHHHHH
Q 006955 303 WNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSD----LPTLDLGRQIHAQAIKIARNQFTTVSNAMIT 378 (624)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (624)
+..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+ ++..+..+..
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 82 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 333444444445555555555544441 122333344444444 555555555555555443 3444445555
Q ss_pred HhHh----hCCHHHHHHHhccCC-CCCchhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc-
Q 006955 379 MYAR----CGNIQSALLEFSSVP-IHDIISWNSIICGLAY----HGYAEKALELFERMRLTDFKPDDITFVGVLSACSY- 448 (624)
Q Consensus 379 ~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 448 (624)
.|.. .+++++|+..|++.. ..++.++..+...|.. .+++++|+..+++..+.+ +...+..+...+..
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAG 159 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcC
Confidence 5665 666666666666554 2356678888888888 899999999999998865 45566667777776
Q ss_pred ---cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh--
Q 006955 449 ---AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI-- 519 (624)
Q Consensus 449 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-- 519 (624)
.+++++|...+++..+. .++..+..+...|.. .+++++|++.+++..+.+ | +..+..+...+..
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGE 232 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCC
Confidence 89999999999998874 256778888899988 999999999999988753 2 6677888888888
Q ss_pred --cCChHHHHHHHHHHHccCCC
Q 006955 520 --HNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 520 --~g~~~~a~~~~~~~~~~~p~ 539 (624)
.+++++|...++++.+..|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCH
T ss_pred CcccCHHHHHHHHHHHHHcCCH
Confidence 89999999999999999884
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=2.1e-13 Score=136.73 Aligned_cols=199 Identities=9% Similarity=-0.056 Sum_probs=138.9
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCCC---------CCchhHHHHHHHHHHcCC-----------------hHHHHHHHH
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVPI---------HDIISWNSIICGLAYHGY-----------------AEKALELFE 425 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 425 (624)
++..+...|...|++++|...+++... ....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 334455555555555555555544330 122356677777777888 888888877
Q ss_pred HHHHC----CCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHHHH
Q 006955 426 RMRLT----DFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 426 ~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
+..+. +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 11111 236667777888899999999999888764211111 2377888999999999999999998
Q ss_pred HcccCC----CC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------CchHHHHHHHHHhcCChHHHHHHHH
Q 006955 497 EIRADG----IE-VSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN------SGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 497 ~~~~~g----~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
+..+.. .. ....++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 876521 11 114577788888999999999999999998865432 3478899999999999999999999
Q ss_pred HHHHC
Q 006955 566 QMKEN 570 (624)
Q Consensus 566 ~m~~~ 570 (624)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=3.3e-13 Score=137.20 Aligned_cols=183 Identities=7% Similarity=-0.057 Sum_probs=152.6
Q ss_pred HHHHhHhhCCH-HHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhccc--
Q 006955 376 MITMYARCGNI-QSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYA-- 449 (624)
Q Consensus 376 l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-- 449 (624)
+...|...|++ ++|+..|++.. +.+...|..+..+|...|++++|...|++..+ ..|+...+..+...+...
T Consensus 108 lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~~~~~~~~ 185 (474)
T 4abn_A 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSMVLRQLQT 185 (474)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHhcc
Confidence 33333344444 44444443332 23456788889999999999999999999998 468878888888999999
Q ss_pred -------ChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhcc--------CChHHHHHHHHHcccCCCCc----CHHH
Q 006955 450 -------GLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRF--------GLIDEAMNLLNEIRADGIEV----SPTV 509 (624)
Q Consensus 450 -------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p----~~~~ 509 (624)
|++++|...++++.+. .| +...|..+..+|... |++++|++.|++..+. .| ++..
T Consensus 186 ~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 260 (474)
T 4abn_A 186 DSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDL 260 (474)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHH
T ss_pred CChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHH
Confidence 9999999999999984 46 688899999999988 9999999999999873 45 6889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
|..+..++...|++++|...+++++++.|.++..+..++.++...|++++|.+.+.
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999997543
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=1e-12 Score=128.39 Aligned_cols=230 Identities=10% Similarity=0.058 Sum_probs=195.2
Q ss_pred CCCH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCC-HHHHHHHhccCC---CCCchhHHH
Q 006955 332 SPDN-ATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN-IQSALLEFSSVP---IHDIISWNS 406 (624)
Q Consensus 332 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~ 406 (624)
.|+. ..|..+...+...|+++.|...++.+++.. +.+..+++.+..++...|+ +++|+..|+++. +.+...|+.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4443 456667777888999999999999999875 3456777889999999997 999999999887 457789999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhc
Q 006955 407 IICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGR 484 (624)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 484 (624)
+..++...|++++|+..|+++.+ +.|+ ...|..+..++...|++++|+..++++.+. .| +...|+.+..+|..
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998 4564 468888999999999999999999999984 56 78899999999998
Q ss_pred -cCChHHH-----HHHHHHcccCCCCc-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 485 -FGLIDEA-----MNLLNEIRADGIEV-SPTVWGALLGACRIHN--NIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 485 -~g~~~~A-----~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
.|..++| ++.+++.+. +.| +...|..+..++...| ++++|...++++ +..|.++..+..|+.+|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence 6665777 588888887 456 5778999999888887 689999999998 889999999999999999875
Q ss_pred ---------ChHHHHHHHHHH-HHC
Q 006955 556 ---------RREDAKRIFAQM-KEN 570 (624)
Q Consensus 556 ---------~~~~A~~~~~~m-~~~ 570 (624)
.+++|.++++++ .+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHh
Confidence 358999999988 454
No 59
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=1.1e-12 Score=118.28 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHH
Q 006955 415 GYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMN 493 (624)
Q Consensus 415 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 493 (624)
|++++|+..+++..+ ..|+ ...+..+..++...|++++|+..++++.+.. .++..+..+..+|...|++++|+.
T Consensus 98 g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 98 GYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444444 2332 2334444444444455555555554444421 334444444445555555555555
Q ss_pred HHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006955 494 LLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGER 532 (624)
Q Consensus 494 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 532 (624)
.++++.+. .| ++..+..+..++...|++++|...+++
T Consensus 173 ~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 173 QYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55544432 22 344444444444455555555544444
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.44 E-value=6.2e-13 Score=129.03 Aligned_cols=234 Identities=9% Similarity=0.010 Sum_probs=154.4
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHh----CCC-CCcchhHHHHHHhHhhCCHHHHHHHhccCC-----CCC----chh
Q 006955 338 FTSVLTICSDLPTLDLGRQIHAQAIKI----ARN-QFTTVSNAMITMYARCGNIQSALLEFSSVP-----IHD----IIS 403 (624)
Q Consensus 338 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~ 403 (624)
+..+...+...|+++.|...+..+.+. +.+ ....++..+...|...|++++|...+++.. .++ ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 334444444444554444444443322 111 112334445555666666666666555543 111 235
Q ss_pred HHHHHHHHHHcCC--------------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHhcccChHHHHHHH
Q 006955 404 WNSIICGLAYHGY--------------------AEKALELFERMRLT----DFKPD-DITFVGVLSACSYAGLVDQGRYY 458 (624)
Q Consensus 404 ~~~l~~~~~~~~~--------------------~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 458 (624)
+..+...+...|+ +++|...+++..+. +..|. ..++..+...+...|++++|...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6667777777777 88888888776542 11111 23666777788889999999999
Q ss_pred HHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHHHHHHHHHHHhcCChHHHHHH
Q 006955 459 FDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTVWGALLGACRIHNNIKVGEIA 529 (624)
Q Consensus 459 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 529 (624)
+++..+...-.++ ..++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9887753211111 337788899999999999999999987642 1111 145777888889999999999999
Q ss_pred HHHHHccCCCC------CchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 530 GERVMELEPNN------SGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 530 ~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++++++..|.. ..++..++.+|...|++++|.+.+++..+..
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99998865433 3478899999999999999999999987753
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=6.7e-13 Score=132.74 Aligned_cols=271 Identities=9% Similarity=-0.011 Sum_probs=134.9
Q ss_pred hhHHHHHHHhcCChHHHHHHHhhcCC--C-C----ceehhhhhhHhhcCCCchHHHHHHHHhHHc----CCCCC-HHHHH
Q 006955 272 WTNVIVGYFEMGEVGSAIKVFELMTT--R-D----VTVWNVMIFGLGENDLGEEGLKFFVQMKES----GPSPD-NATFT 339 (624)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~ 339 (624)
+......+...|++++|...|+++.. + + ..+|..+...+...|++++|...+++.... +-.|. ...+.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34445556666666666666655532 1 1 124455555566666666666666554322 11111 22334
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCC-CCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCC--
Q 006955 340 SVLTICSDLPTLDLGRQIHAQAIKIARN-QFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGY-- 416 (624)
Q Consensus 340 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 416 (624)
.+...+...|+++.|...+..+.+.... ++.. ....++..+...|...|+
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV---------------------------GEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------------------------HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc---------------------------chHHHHHHHHHHHHHcCCcc
Confidence 4444445555555555555544332110 0000 002244455555555555
Q ss_pred ------------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC--
Q 006955 417 ------------------AEKALELFERMRLT----DFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-- 471 (624)
Q Consensus 417 ------------------~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-- 471 (624)
+++|...+++..+. +-.|. ..++..+...+...|++++|...+++..+...-.++
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 224 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH
Confidence 55555555554331 11111 124455555566666666666666665542110111
Q ss_pred --cchHHHHHHHhhccCChHHHHHHHHHcccC----CCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC----
Q 006955 472 --SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNN---- 540 (624)
Q Consensus 472 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---- 540 (624)
..++..+...|...|++++|...+++..+. +..+. ..++..+...+...|++++|...++++.+..+..
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 225556666666666666666666665431 11111 3355556666666666666666666666643322
Q ss_pred --CchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 541 --SGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 541 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
+.++..++.+|...|++++|.+.+++..+
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33566666666666666666666666543
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=3.1e-12 Score=112.18 Aligned_cols=166 Identities=10% Similarity=-0.015 Sum_probs=141.8
Q ss_pred CcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 006955 369 FTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLS 444 (624)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 444 (624)
++.+|..+...|...|++++|+..|++.. +.++.+|..+..+|...|++++|...++..... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 45567778888888999999988888776 456778999999999999999999999999874 444 456677777
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNI 523 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 523 (624)
.+...++++.+...+.+..+. .| +...+..+...|.+.|++++|++.|++..+.. +.++.+|..+..++...|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 888999999999999998874 45 67888999999999999999999999988742 33678999999999999999
Q ss_pred HHHHHHHHHHHccCCCC
Q 006955 524 KVGEIAGERVMELEPNN 540 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~ 540 (624)
++|...++++++++|.+
T Consensus 158 ~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhCCccC
Confidence 99999999999999954
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=7.7e-13 Score=132.29 Aligned_cols=293 Identities=11% Similarity=0.009 Sum_probs=206.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhcC---CCC----cchhhHHHHHHHhcCChHHHHHHHhhcCC-----C----Cce
Q 006955 238 EKTWNSIISVLIRNGLVKEAHSYLEKYP---YSN----IASWTNVIVGYFEMGEVGSAIKVFELMTT-----R----DVT 301 (624)
Q Consensus 238 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~ 301 (624)
...+......+...|++++|...++++. +.+ ..++..+...|...|++++|...+++... . ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3456677788999999999999999988 333 24677888999999999999999887642 1 245
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHHcCC-CCC----HHHHHHHHHHHcCCCC--------------------cHHHHH
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGP-SPD----NATFTSVLTICSDLPT--------------------LDLGRQ 356 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~ 356 (624)
++..+...+...|++++|+..+++..+... .++ ..++..+...+...|+ ++.|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 677888899999999999999998765310 111 2244444455555555 444444
Q ss_pred HHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC--CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-C
Q 006955 357 IHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH--DIISWNSIICGLAYHGYAEKALELFERMRLTDF-K 433 (624)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~ 433 (624)
.+....+ ++.....+ ...++..+...|...|++++|...+++..+... .
T Consensus 169 ~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 169 FYEENLS----------------------------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH----------------------------HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 4433322 11111100 123577778888888999999998888765210 1
Q ss_pred CC----hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccC----
Q 006955 434 PD----DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD---- 501 (624)
Q Consensus 434 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 501 (624)
++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.+++..+.
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 22 136777788888999999999999987753211111 557788999999999999999999987652
Q ss_pred CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC------CCCchHHHHHHHHHhcCChH
Q 006955 502 GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEP------NNSGVYLILTEMYLSCGRRE 558 (624)
Q Consensus 502 g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 558 (624)
+..+ ...++..+..++...|++++|...+++++++.+ ....++..++.++...|+..
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1111 155778888899999999999999999998643 23456888888888888764
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=6e-12 Score=132.98 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=147.3
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHH
Q 006955 400 DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTC 477 (624)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 477 (624)
+..+|+.+...|...|++++|+..|++..+ +.|+. ..+..+..++.+.|++++|+..|+++.+ +.| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788999999999999999999999998 46664 6888899999999999999999999987 457 6888999
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGR 556 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 556 (624)
+..+|...|++++|++.|++.++ +.| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999999887 456 577999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 006955 557 REDAKRIFAQMKE 569 (624)
Q Consensus 557 ~~~A~~~~~~m~~ 569 (624)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=7.5e-11 Score=112.73 Aligned_cols=221 Identities=9% Similarity=-0.007 Sum_probs=145.4
Q ss_pred hHHHHHHHHhHHcCCCCCHHHHHHHHHHHc-------CCCCc-------HHHHHHHHHHHHhCCCCCcchhHHHHHHhHh
Q 006955 317 EEGLKFFVQMKESGPSPDNATFTSVLTICS-------DLPTL-------DLGRQIHAQAIKIARNQFTTVSNAMITMYAR 382 (624)
Q Consensus 317 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (624)
++|...|++..... +-+...|..+...+. ..|++ ++|..+++...+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665531 223344444444332 34554 6666666666663223344456667777777
Q ss_pred hCCHHHHHHHhccCC--CC-Cch-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh-cccChHHHHHH
Q 006955 383 CGNIQSALLEFSSVP--IH-DII-SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC-SYAGLVDQGRY 457 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~--~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~ 457 (624)
.|++++|..+|+++. .| +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777655 22 333 67788888888888888888888887742 22333443333222 23688888888
Q ss_pred HHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCC-CCc--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 458 YFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG-IEV--SPTVWGALLGACRIHNNIKVGEIAGERV 533 (624)
Q Consensus 458 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 533 (624)
+|++..+. .| ++..|..++..+.+.|+.++|..+|+++.+.. ++| ....|..++......|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888774 24 67777888888888888888888888887652 354 3567777788778888888888888888
Q ss_pred HccCCCCCc
Q 006955 534 MELEPNNSG 542 (624)
Q Consensus 534 ~~~~p~~~~ 542 (624)
.+..|.++.
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 888886543
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=1.3e-12 Score=131.01 Aligned_cols=202 Identities=9% Similarity=-0.028 Sum_probs=137.9
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhC-----CCCCcchhHHHHHHhHhhCC-----------------HHHHHHHhc
Q 006955 337 TFTSVLTICSDLPTLDLGRQIHAQAIKIA-----RNQFTTVSNAMITMYARCGN-----------------IQSALLEFS 394 (624)
Q Consensus 337 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 394 (624)
.+..+...+...|+++.|...+..+.+.. .+....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 34444444555555555555555443321 11122344556666666777 666666665
Q ss_pred cCC-------C--CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHhcccChHHHHHHHHH
Q 006955 395 SVP-------I--HDIISWNSIICGLAYHGYAEKALELFERMRLTDF-KPD----DITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 395 ~~~-------~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
+.. . ....++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 543 1 1234677888889999999999999998876311 112 1267788889999999999999999
Q ss_pred HhhhhcCCCC----CcchHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 006955 461 CMKNKYFLQP----RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTVWGALLGACRIHNNIKVGEIAGE 531 (624)
Q Consensus 461 ~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 531 (624)
+..+...-.. ...++..+...|...|++++|.+.+++..+. +..+ ...++..+..++...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8876421011 1567788999999999999999999987652 1111 13477788889999999999999999
Q ss_pred HHHccCC
Q 006955 532 RVMELEP 538 (624)
Q Consensus 532 ~~~~~~p 538 (624)
++.++.+
T Consensus 368 ~al~~~~ 374 (411)
T 4a1s_A 368 QHLQLAX 374 (411)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 9999876
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=3.7e-11 Score=105.15 Aligned_cols=165 Identities=19% Similarity=0.069 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHh
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLL 482 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 482 (624)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 34555566666777777777777665531 2234566666667777777777777777776631 22566777778888
Q ss_pred hccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHH
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKR 562 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 562 (624)
...|++++|.+.++++.+.. +.++..+..+..++...|++++|...++++.+..|.++..+..++.++...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888877642 34567777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHCC
Q 006955 563 IFAQMKENG 571 (624)
Q Consensus 563 ~~~~m~~~~ 571 (624)
.+++..+..
T Consensus 166 ~~~~~~~~~ 174 (186)
T 3as5_A 166 HFKKANELD 174 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 888876643
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=7.7e-12 Score=123.91 Aligned_cols=227 Identities=11% Similarity=-0.026 Sum_probs=157.6
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhCC--C--C-CcchhHHHHHHhHhhCCHHHHHHHhccCC-----CC-----CchhHHHH
Q 006955 343 TICSDLPTLDLGRQIHAQAIKIAR--N--Q-FTTVSNAMITMYARCGNIQSALLEFSSVP-----IH-----DIISWNSI 407 (624)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~--~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~-----~~~~~~~l 407 (624)
..+...|+++.|...+..+.+.-. + + ...++..+...|...|+++.|+..+++.. .+ ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 344556666666666666654311 1 1 12345566667777777777766665544 11 12467788
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC-CCCh----hhHHHHHHHhcccChHHHHHHHHHHhhhhc---CCCC-CcchHHHH
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDF-KPDD----ITFVGVLSACSYAGLVDQGRYYFDCMKNKY---FLQP-RSAHYTCV 478 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l 478 (624)
...|...|++++|+..+++..+... .++. .++..+...+...|++++|...+++..+.. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 8889999999999999988775311 1121 367778888999999999999999887621 1213 46678889
Q ss_pred HHHhhccCChHHHHHHHHHcccCCC---Cc-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGI---EV-SPTVWGALLGACRIHNN---IKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~---~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
...|.+.|++++|.+.+++..+..- .| ....+..+...+...|+ .++|...+++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 9999999999999999998765210 12 12235667777888888 77888888776 33344566788999999
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 006955 552 LSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~~ 570 (624)
...|++++|.+.+++..+.
T Consensus 350 ~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998654
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=124.48 Aligned_cols=246 Identities=13% Similarity=0.083 Sum_probs=146.5
Q ss_pred eehhhhhhHhhcCCCchHHHHHHHHhHHc-------CCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchh
Q 006955 301 TVWNVMIFGLGENDLGEEGLKFFVQMKES-------GPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVS 373 (624)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 373 (624)
.++..+...+...|++++|..+++++.+. ..+.....+..+...+...|+++.|...+..+.+....
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------ 101 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK------ 101 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------
Confidence 45666667777777777777777776552 11222334445555555556666655555544432100
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHh
Q 006955 374 NAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLT------DFKPD-DITFVGVLSAC 446 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~ 446 (624)
.+..-......++..+...|...|++++|...++++.+. +-.|+ ...+..+...+
T Consensus 102 ------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 163 (311)
T 3nf1_A 102 ------------------TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC 163 (311)
T ss_dssp ------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ------------------HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 000000112345667777788888888888888877653 22222 24566777788
Q ss_pred cccChHHHHHHHHHHhhhhc-----CCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC-------CCCcCH------
Q 006955 447 SYAGLVDQGRYYFDCMKNKY-----FLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-------GIEVSP------ 507 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~~------ 507 (624)
...|++++|..+++++.+.. +..| ...++..+...|...|++++|.+.++++.+. ...+..
T Consensus 164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 88899999988888877631 1123 3556778888899999999999998887752 111111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 508 -TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 508 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..+..+...+...+.+.++...++++....|.++.++..++.+|...|++++|.+++++..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 122222233445667777777888888888888889999999999999999999999987653
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=1.1e-10 Score=111.69 Aligned_cols=213 Identities=10% Similarity=0.024 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHhH-------hhCCH-------HHHHHHhccCC----CCCchhHHHHHHHHHH
Q 006955 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYA-------RCGNI-------QSALLEFSSVP----IHDIISWNSIICGLAY 413 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 413 (624)
+.|..+|+.+.... +.++.++..++..+. +.|++ ++|..+|++.. +.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887753 456666766776665 35886 89999998765 2355689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhh-ccCChH
Q 006955 414 HGYAEKALELFERMRLTDFKPDDI--TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLG-RFGLID 489 (624)
Q Consensus 414 ~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~ 489 (624)
.|++++|..+|+++.+ +.|+.. .|..+...+.+.|++++|..+|+++.+. .| +...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 566543 7888888899999999999999999873 34 4555544443322 369999
Q ss_pred HHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc---CCC-CCchHHHHHHHHHhcCChHHHHHHH
Q 006955 490 EAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMEL---EPN-NSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
+|.++|+++.+. .| ++..|..++..+...|++++|..+|+++++. .|. ....+..++..+...|+.++|..++
T Consensus 187 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998873 44 6789999999999999999999999999995 442 4567888999999999999999999
Q ss_pred HHHHHCCC
Q 006955 565 AQMKENGV 572 (624)
Q Consensus 565 ~~m~~~~~ 572 (624)
+++.+...
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 99987653
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.29 E-value=7.2e-12 Score=121.44 Aligned_cols=237 Identities=11% Similarity=-0.008 Sum_probs=149.3
Q ss_pred hhhhhhHhhcCCCchHHHHHHHHhHHc----CCCCC-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCC-C----cch
Q 006955 303 WNVMIFGLGENDLGEEGLKFFVQMKES----GPSPD-NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQ-F----TTV 372 (624)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~ 372 (624)
+..+...+...|++++|...+++.... +-.|. ...+..+...+...|+++.|...+....+..... + ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 334444445555555555555443221 11111 2334444455555556666655555544321111 1 224
Q ss_pred hHHHHHHhHhhCC--------------------HHHHHHHhccCC-----CC----CchhHHHHHHHHHHcCChHHHHHH
Q 006955 373 SNAMITMYARCGN--------------------IQSALLEFSSVP-----IH----DIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 373 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~~-----~~----~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
+..+...|...|+ +++|...+++.. .+ ...++..+...+...|++++|...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4556666666666 677766665543 01 234677788888999999999999
Q ss_pred HHHHHHCCC-CCC----hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHH
Q 006955 424 FERMRLTDF-KPD----DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNL 494 (624)
Q Consensus 424 ~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~ 494 (624)
+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 998765310 111 136777788889999999999999988763211111 56778889999999999999999
Q ss_pred HHHcccC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 495 LNEIRAD----GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 495 ~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
++++.+. +..+ ...++..+...+...|++++|...+++++++.+.
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9987652 1111 1447778888999999999999999999987763
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=4.8e-11 Score=108.61 Aligned_cols=165 Identities=10% Similarity=-0.004 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHH
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVD 480 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 480 (624)
..|......+...|++++|+..|++..+....++...+..+..++...|++++|...+++..+ ..| +...+..+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence 344444444555555555555555554432113334444444445555555555555555444 223 3344444555
Q ss_pred HhhccCChHHHHHHHHHcccCCCCc-CH-------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CCchHHHHHHH
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEV-SP-------TVWGALLGACRIHNNIKVGEIAGERVMELEPN--NSGVYLILTEM 550 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 550 (624)
+|...|++++|++.+++..+ ..| ++ ..|..+...+...|++++|+..++++++..|. ++..+..++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 55555555555555555444 222 22 22444444444555555555555555555554 44555555555
Q ss_pred HHhcCCh---------------------------HHHHHHHHHHHHCC
Q 006955 551 YLSCGRR---------------------------EDAKRIFAQMKENG 571 (624)
Q Consensus 551 ~~~~g~~---------------------------~~A~~~~~~m~~~~ 571 (624)
|...|+. ++|...+++..+..
T Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5555444 99999999887753
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=4.7e-11 Score=121.34 Aligned_cols=180 Identities=11% Similarity=-0.019 Sum_probs=157.1
Q ss_pred HHHHHHHhccCC---CCCchhHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHH
Q 006955 386 IQSALLEFSSVP---IHDIISWNSIICGLAYHGYA-EKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
+++++..++... +.+...|..+...+...|++ ++|+..|++..+. .|+ ...+..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555443 34667888899999999999 9999999999984 555 5788899999999999999999999
Q ss_pred HhhhhcCCCCCcchHHHHHHHhhcc---------CChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc--------CCh
Q 006955 461 CMKNKYFLQPRSAHYTCVVDLLGRF---------GLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH--------NNI 523 (624)
Q Consensus 461 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--------g~~ 523 (624)
++.+ +.|+...+..+..+|... |++++|++.++++.+.. +.+...|..+..++... |++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9987 468888899999999999 99999999999998742 33588999999999888 999
Q ss_pred HHHHHHHHHHHccCC---CCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 524 KVGEIAGERVMELEP---NNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++|...++++++++| .++..+..++.+|...|++++|.+.+++..+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999 999999999999999999999999999987753
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=1.2e-10 Score=105.85 Aligned_cols=206 Identities=8% Similarity=0.035 Sum_probs=128.7
Q ss_pred CCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHH
Q 006955 333 PDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIIC 409 (624)
Q Consensus 333 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~ 409 (624)
.|+..+......+...|++++|...|..+.+...+++...+..+..++...|++++|+..|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 34566666677777778888888888877776654555555556777777777777777776654 224456666667
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCh--------hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC---cchHHHH
Q 006955 410 GLAYHGYAEKALELFERMRLTDFKPDD--------ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR---SAHYTCV 478 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~g~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 478 (624)
+|...|++++|+..+++..+. .|+. ..+..+...+...|++++|...++++.+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 777777777777777776663 3432 2345555566666777777777776665 3343 3455555
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
..+|...| ...++++...+ ..+...+.... ....+.+++|...+++++++.|.++.+...+..+.
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 55554333 33334443322 22233333322 23345569999999999999999888777776554
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=2e-10 Score=100.39 Aligned_cols=168 Identities=13% Similarity=-0.041 Sum_probs=143.2
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
.+..+...+...|++++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 34557778889999999999999887 3466788889999999999999999999998852 3355678888889999
Q ss_pred cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 528 (624)
.|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++.+.. +.++..+..+...+...|++++|..
T Consensus 89 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999875 22367888899999999999999999999988743 4467889999999999999999999
Q ss_pred HHHHHHccCCCCCch
Q 006955 529 AGERVMELEPNNSGV 543 (624)
Q Consensus 529 ~~~~~~~~~p~~~~~ 543 (624)
.++++.+..|.++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999988866543
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.25 E-value=1.1e-09 Score=107.99 Aligned_cols=197 Identities=15% Similarity=0.055 Sum_probs=121.7
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCC-------C---C-CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--Chhh
Q 006955 374 NAMITMYARCGNIQSALLEFSSVP-------I---H-DIISWNSIICGLAYHGYAEKALELFERMRLTDFK--P--DDIT 438 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~-------~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~ 438 (624)
..+...+...|++++|...+++.. . | ....+..+...+...|++++|...+++....... | ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 344555566666666665555443 1 1 1224555667777888888888888877653211 1 1134
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHH-----HHHHHhhccCChHHHHHHHHHcccCCCCc---CHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYT-----CVVDLLGRFGLIDEAMNLLNEIRADGIEV---SPTVW 510 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~ 510 (624)
+..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 55666677778888888888887765321111111121 23344667888888888888877543211 12245
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCC------CchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 511 GALLGACRIHNNIKVGEIAGERVMELEPNN------SGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..+..++...|++++|...++++....+.. ...+..++.++...|++++|...+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 666677788888888888888877643321 135667788888888888888888877653
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.25 E-value=4.8e-11 Score=118.21 Aligned_cols=228 Identities=11% Similarity=0.012 Sum_probs=155.8
Q ss_pred hHhhcCCCchHHHHHHHHhHHc----CCCC-CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCC------cchhHHH
Q 006955 308 FGLGENDLGEEGLKFFVQMKES----GPSP-DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQF------TTVSNAM 376 (624)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 376 (624)
..+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+.....+ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3455566666666666665432 1111 123455555566666666666666666554321111 2345666
Q ss_pred HHHhHhhCCHHHHHHHhccCC-----CCC----chhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHH
Q 006955 377 ITMYARCGNIQSALLEFSSVP-----IHD----IISWNSIICGLAYHGYAEKALELFERMRLT----DFKPD-DITFVGV 442 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l 442 (624)
...|...|++++|+..|++.. .++ ..++..+...|...|++++|+..+++..+. +..|+ ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 777777788887777776654 111 136788889999999999999999988762 22233 3578888
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCC--CC-CcchHHHHHHHhhccCC---hHHHHHHHHHcccCCCCcC-HHHHHHHHH
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFL--QP-RSAHYTCVVDLLGRFGL---IDEAMNLLNEIRADGIEVS-PTVWGALLG 515 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 515 (624)
...+...|++++|...+++..+...- .| ....+..+...|...|+ +++|+.++++.. ..|+ ...+..+..
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHHHH
Confidence 88999999999999999988763211 11 22335678889999999 888888888874 3443 457778889
Q ss_pred HHHhcCChHHHHHHHHHHHccCC
Q 006955 516 ACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
.|...|++++|...++++.++..
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999988543
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=2.4e-09 Score=111.76 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=79.9
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCC---hhHHHHHHHHcccC-----CcccHHH
Q 006955 144 DVASWTIMVNGLVREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGC---VGVAEDLFQKMHDR-----DLTSWKQ 212 (624)
Q Consensus 144 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-----~~~~~~~ 212 (624)
|...|..++..+.+.+.++.+..+|+.+.. .....|...+..-.+.|+ ++.+..+|++.... ++..|..
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~ 144 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLS 144 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 778899999988888999999999988873 366778888888888888 99999999998763 3345555
Q ss_pred HHHHHHcCCCH--------HHHHHHhhhCC------CCC-cchHHHHHHHHH---------hcCChHHHHHHHhhcC
Q 006955 213 LINGLVNSRRI--------DAAISYFKQMP------ETC-EKTWNSIISVLI---------RNGLVKEAHSYLEKYP 265 (624)
Q Consensus 213 l~~~~~~~~~~--------~~A~~~~~~~~------~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 265 (624)
.+......++. +...++|+... +++ ...|...+.... ..+..+.+..+|..+.
T Consensus 145 Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 145 YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 55544444432 22335555432 222 235555554433 2334566777777777
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=7.5e-09 Score=108.05 Aligned_cols=220 Identities=6% Similarity=-0.073 Sum_probs=154.2
Q ss_pred HHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHH-HHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccC
Q 006955 318 EGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGR-QIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSV 396 (624)
Q Consensus 318 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (624)
.+..+|++.... ++-....|.....-+...|+.+.|. .++...... .|.+..++-..+....+.|+++.|.++|+++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345567666554 2334555555555566667778886 888888763 3455556666777888888888888888876
Q ss_pred CC-------------CC------------chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc-cC
Q 006955 397 PI-------------HD------------IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY-AG 450 (624)
Q Consensus 397 ~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g 450 (624)
.. |+ ...|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 52 21 235777888888889999999999999875111122333322222222 35
Q ss_pred hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc--CHHHHHHHHHHHHhcCChHHHHH
Q 006955 451 LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV--SPTVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~ 528 (624)
+.+.|..+|+...+.. +-+...+...++.....|+.+.|..+|++.......+ ....|...+.--...|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5899999999998863 2356667788888888899999999999988753212 34577777777788999999999
Q ss_pred HHHHHHccCCCCC
Q 006955 529 AGERVMELEPNNS 541 (624)
Q Consensus 529 ~~~~~~~~~p~~~ 541 (624)
+.+++.+..|+++
T Consensus 563 v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 563 LEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHSTTCC
T ss_pred HHHHHHHhCCCCc
Confidence 9999999999654
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=118.42 Aligned_cols=247 Identities=11% Similarity=0.084 Sum_probs=156.2
Q ss_pred CcchhhHHHHHHHhcCChHHHHHHHhhcCC--------C---CceehhhhhhHhhcCCCchHHHHHHHHhHHc------C
Q 006955 268 NIASWTNVIVGYFEMGEVGSAIKVFELMTT--------R---DVTVWNVMIFGLGENDLGEEGLKFFVQMKES------G 330 (624)
Q Consensus 268 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 330 (624)
+..++..+...+...|++++|...|+++.. . ...++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345688889999999999999999988764 2 2456788889999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHH
Q 006955 331 PSP-DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIIC 409 (624)
Q Consensus 331 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 409 (624)
-.| ....+..+...+...|+++.|...+..+.+..... +..-......++..+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------------------~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV------------------------LGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------------------HCTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh------------------------cCCCChHHHHHHHHHHH
Confidence 223 24566677777788888888888887765531000 00000002234666667
Q ss_pred HHHHcCChHHHHHHHHHHHHC------CCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhc------CCCC-CcchH
Q 006955 410 GLAYHGYAEKALELFERMRLT------DFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKY------FLQP-RSAHY 475 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~------g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~ 475 (624)
.+...|++++|+..++++.+. +..|.. .++..+...+...|++++|...++++.+.. ...| ....+
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 777777777777777776653 112222 356667777788888888888888776521 1112 12222
Q ss_pred ------HHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 476 ------TCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 476 ------~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
..+...+...+.+.+|...++...... +....++..+..+|...|++++|...+++++++.|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 222333444556666666777666421 335668889999999999999999999999998773
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.16 E-value=2.5e-10 Score=112.68 Aligned_cols=225 Identities=11% Similarity=-0.039 Sum_probs=153.4
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCC-C----CcchhHHHHHHhHhhCCHHHHHHHhccCC-----CC-----CchhHHHHH
Q 006955 344 ICSDLPTLDLGRQIHAQAIKIARN-Q----FTTVSNAMITMYARCGNIQSALLEFSSVP-----IH-----DIISWNSII 408 (624)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~-----~~~~~~~l~ 408 (624)
.+...|+++.|...+..+.+.... + ...++..+...|...|+++.|...+++.. .+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 345566666666666665543211 1 12345556667777777777766665543 11 134677888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHhcccChHHHHHHHHHHhhhhc---CCCCCcchHHHHHH
Q 006955 409 CGLAYHGYAEKALELFERMRLTDF-KPD----DITFVGVLSACSYAGLVDQGRYYFDCMKNKY---FLQPRSAHYTCVVD 480 (624)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~ 480 (624)
..|...|++++|++.+++..+..- .++ ..++..+..++...|++++|...+++..+.. +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 889999999999999988765210 112 2366777888899999999999999887621 11123667788899
Q ss_pred HhhccCChHHHHHHHHHcccCCC---CcC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGI---EVS-PTVWGALLGACRIHNN---IKVGEIAGERVMELEPNNSGVYLILTEMYLS 553 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 553 (624)
+|.+.|++++|.+.+++..+..- .|. ...+..+...+...|+ ..+|...+++.. ..|.....+..++..|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHH
Confidence 99999999999999998765311 222 3355556666777788 777777777632 233345678889999999
Q ss_pred cCChHHHHHHHHHHHH
Q 006955 554 CGRREDAKRIFAQMKE 569 (624)
Q Consensus 554 ~g~~~~A~~~~~~m~~ 569 (624)
.|++++|.+.+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=9.8e-10 Score=102.19 Aligned_cols=188 Identities=10% Similarity=0.024 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC-cchHHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPD----DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-SAHYTC 477 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 477 (624)
.+..+...+...|++++|...|+++.+. .|+ ...+..+..++...|++++|...|+++.+...-.|. ...+..
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3333444444555555555555555442 222 223344444445555555555555554443110111 223334
Q ss_pred HHHHhhc--------cCChHHHHHHHHHcccCCCCcC-HHH-----------------HHHHHHHHHhcCChHHHHHHHH
Q 006955 478 VVDLLGR--------FGLIDEAMNLLNEIRADGIEVS-PTV-----------------WGALLGACRIHNNIKVGEIAGE 531 (624)
Q Consensus 478 l~~~~~~--------~g~~~~A~~~~~~~~~~g~~p~-~~~-----------------~~~l~~~~~~~g~~~~a~~~~~ 531 (624)
+..++.. .|++++|+..|+++++. .|+ +.. +..+...+...|++++|+..++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444 55555555555554432 221 112 3566778899999999999999
Q ss_pred HHHccCCCCC---chHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCc
Q 006955 532 RVMELEPNNS---GVYLILTEMYLSC----------GRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHP 598 (624)
Q Consensus 532 ~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (624)
++++..|.++ ..+..++.+|... |++++|...++++.+.. | .+|
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p-------------------~~~ 229 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P-------------------DSP 229 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T-------------------TCT
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C-------------------CCh
Confidence 9999999744 4789999999977 89999999999987753 2 266
Q ss_pred chHHHHHHHHHHHHHHHHh
Q 006955 599 KFHRLRYLLNLLHTEIERE 617 (624)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~ 617 (624)
...+....+..+...++..
T Consensus 230 ~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777777777777776654
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=4e-09 Score=97.51 Aligned_cols=176 Identities=12% Similarity=-0.013 Sum_probs=115.7
Q ss_pred HHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 389 ALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 389 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
|+..|++.. .++..++..+..++...|++++|++++.+....|-.+ +...+..++..+.+.|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555443 2344455566677777888888888888776544322 335666677778888888888888888776
Q ss_pred hcCCCC-----CcchHHHHHHH--hhccC--ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 465 KYFLQP-----RSAHYTCVVDL--LGRFG--LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 465 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
..| +..+...|+.+ ....| +..+|..+|+++.+ ..|+...-..++.++...|++++|+..++.+.+
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345 24444555544 33334 78888888888765 245533333444467778888888888887766
Q ss_pred c----------CCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 536 L----------EPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 536 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
. +|.|+.++..++.+....|+ +|.+++.++++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5 47777888777777777776 7778888777653
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.11 E-value=2.6e-10 Score=120.50 Aligned_cols=162 Identities=12% Similarity=0.092 Sum_probs=136.8
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHH
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSA 445 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~ 445 (624)
...++.|..+|.+.|++++|++.|++.. +.+..+|+.+..+|.+.|++++|+..|++..+ +.|+. ..+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4455667777777888888888777765 34567889999999999999999999999988 46654 688889999
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCCh
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNI 523 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 523 (624)
+...|++++|++.++++.+ +.| +...|..+..+|...|++++|++.|++.++ +.| ++..+..+..++...|++
T Consensus 87 l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999987 457 678899999999999999999999999887 456 477899999999999999
Q ss_pred HHHHHHHHHHHccCC
Q 006955 524 KVGEIAGERVMELEP 538 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p 538 (624)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999887544
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.10 E-value=2.3e-09 Score=105.73 Aligned_cols=226 Identities=10% Similarity=0.034 Sum_probs=149.8
Q ss_pred HhhcCCCchHHHHHHHHhHHcC-CCCC----HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCC------CcchhHHHH
Q 006955 309 GLGENDLGEEGLKFFVQMKESG-PSPD----NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQ------FTTVSNAMI 377 (624)
Q Consensus 309 ~~~~~~~~~~a~~~~~~m~~~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~ 377 (624)
.+...|++++|+..|++..+.. -.++ ...+..+...+...|+++.|...+....+..... ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3455666666666666554321 0121 2344555556666666666666666555432111 123445666
Q ss_pred HHhHhhCCHHHHHHHhccCCC-----CC----chhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCChhhHHHHHH
Q 006955 378 TMYARCGNIQSALLEFSSVPI-----HD----IISWNSIICGLAYHGYAEKALELFERMRLT----DFKPDDITFVGVLS 444 (624)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~ 444 (624)
..|...|++++|+..|++... ++ ..+++.+..+|...|++++|+..+++..+. +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 777777777777777665541 11 246777888899999999999999988761 11222467778888
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCCC---cchHHHHHHHhhccCC---hHHHHHHHHHcccCCCCcC-HHHHHHHHHHH
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQPR---SAHYTCVVDLLGRFGL---IDEAMNLLNEIRADGIEVS-PTVWGALLGAC 517 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 517 (624)
.+...|++++|...+++..+...-.++ ...+..+...|...|+ +.+|+..+++.. ..|+ ...+..+...|
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHH
Confidence 999999999999999998874322112 3345667777888888 888888888743 3443 44667788889
Q ss_pred HhcCChHHHHHHHHHHHccC
Q 006955 518 RIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 518 ~~~g~~~~a~~~~~~~~~~~ 537 (624)
...|++++|...++++.+..
T Consensus 347 ~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999987643
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=9.3e-11 Score=98.44 Aligned_cols=140 Identities=12% Similarity=-0.025 Sum_probs=95.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCC
Q 006955 410 GLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGL 487 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 487 (624)
.+...|++++|+..++.... ..|+. ..+..+...|.+.|++++|++.|+++.+ +.| ++..|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 33445566666666666544 23332 3445566667777777777777777766 345 56777777778888888
Q ss_pred hHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006955 488 IDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEI-AGERVMELEPNNSGVYLILTEMYLSCGR 556 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 556 (624)
+++|+..|++..+ +.| ++..|..+...+...|++++|.+ +++++++++|.++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888887776 445 46677777777777777766554 4578888888888888777777777664
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=6.9e-10 Score=104.38 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=143.1
Q ss_pred cCCCCcHHHHHHHHHHHHh-------CCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC-------C----CchhHHHH
Q 006955 346 SDLPTLDLGRQIHAQAIKI-------ARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI-------H----DIISWNSI 407 (624)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 407 (624)
...|+++.|...+++..+. ..+....++..+...|...|++++|+..++++.. + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888877653 1122355667778888888888888887776541 1 23467777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhc-----CCCC-Ccch
Q 006955 408 ICGLAYHGYAEKALELFERMRLT------DFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKY-----FLQP-RSAH 474 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 474 (624)
...|...|++++|...+++..+. .-.|+ ..++..+...+...|++++|...++++.+.. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77888888888888888887653 11122 3466677777888888888888888877630 0123 3556
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccC-------CCCcC-HHHHHHHHHHHHhcCC------hHHHHHHHHHHHccCCCC
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRAD-------GIEVS-PTVWGALLGACRIHNN------IKVGEIAGERVMELEPNN 540 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~ 540 (624)
+..+..+|...|++++|.+.++++.+. ...+. ...|..+...+...+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 777788888888888888888876642 11222 2233333333332222 233333333333344555
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 541 SGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+..+..++.+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667999999999999999999999987653
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=5.9e-10 Score=118.51 Aligned_cols=147 Identities=13% Similarity=-0.086 Sum_probs=71.3
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHH
Q 006955 401 IISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCV 478 (624)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 478 (624)
...|..+..++...|++++|+..+++..+. .|+ ...+..+..++...|++++|...|+++.+ +.| +...+..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~l 507 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLAL 507 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHH
Confidence 334444445555555555555555555442 232 23444444455555555555555555544 223 34445555
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
..+|.+.|++++ ++.|+++.+ +.| +...|..+..++...|++++|...++++++++|.++..+..++.++...|
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 555555555555 555555444 222 34445555555555555555555555555555555555555555554433
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=2e-09 Score=88.21 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=86.3
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACR 518 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (624)
+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|.+.++++...+ +.++..+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3444455555566666666666655431 1245556666666777777777777777766532 334566667777777
Q ss_pred hcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 519 IHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 519 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..|++++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7778888888888777777777777777888888888888888887777654
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.05 E-value=5.3e-09 Score=94.61 Aligned_cols=62 Identities=8% Similarity=0.055 Sum_probs=54.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 006955 512 ALLGACRIHNNIKVGEIAGERVMELEPNNS---GVYLILTEMYLSCGRREDAKRIFAQMKENGVK 573 (624)
Q Consensus 512 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 573 (624)
.+...+...|+++.|...++++++..|.++ ..+..++.+|.+.|++++|.+.++.+...+..
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 455668899999999999999999999775 56999999999999999999999999887643
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=2.1e-09 Score=99.89 Aligned_cols=181 Identities=11% Similarity=-0.040 Sum_probs=130.9
Q ss_pred chhHHHHHHhHhhCCHHHHHHHhccCC--CC-C---chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hhhHH
Q 006955 371 TVSNAMITMYARCGNIQSALLEFSSVP--IH-D---IISWNSIICGLAYHGYAEKALELFERMRLTDFKPD----DITFV 440 (624)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~ 440 (624)
..+-.+...+.+.|++++|+..|+++. .| + ...+..+..+|...|++++|+..|++..+. .|+ ...+.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHHHH
Confidence 334445666777778888887777765 22 3 456777788888889999999999888874 332 23555
Q ss_pred HHHHHhcc--------cChHHHHHHHHHHhhhhcCCCC-CcchH-----------------HHHHHHhhccCChHHHHHH
Q 006955 441 GVLSACSY--------AGLVDQGRYYFDCMKNKYFLQP-RSAHY-----------------TCVVDLLGRFGLIDEAMNL 494 (624)
Q Consensus 441 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p-~~~~~-----------------~~l~~~~~~~g~~~~A~~~ 494 (624)
.+..++.. .|++++|...|+++.+.. | +.... ..+...|.+.|++++|+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66667777 889999999999888753 5 33333 4568889999999999999
Q ss_pred HHHcccCCCCcC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHHccCCCCCch---HHHHHHHHHhcCCh
Q 006955 495 LNEIRADGIEVS----PTVWGALLGACRIH----------NNIKVGEIAGERVMELEPNNSGV---YLILTEMYLSCGRR 557 (624)
Q Consensus 495 ~~~~~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~ 557 (624)
|+++++. .|+ +..+..+..++... |++++|...++++++..|+++.. ...+..++...|++
T Consensus 171 ~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 171 YEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 9998863 343 45677777788765 89999999999999999977643 44455455444444
Q ss_pred H
Q 006955 558 E 558 (624)
Q Consensus 558 ~ 558 (624)
+
T Consensus 249 ~ 249 (261)
T 3qky_A 249 E 249 (261)
T ss_dssp H
T ss_pred h
Confidence 3
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=2.7e-09 Score=100.86 Aligned_cols=131 Identities=10% Similarity=-0.073 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-------hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCc-c
Q 006955 403 SWNSIICGLAYH-GYAEKALELFERMRLTDFKPD-------DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRS-A 473 (624)
Q Consensus 403 ~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~ 473 (624)
+++.+...|... |++++|+..|++..+. .|+ ..++..+...+...|++++|...++++.+. .|+. .
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~ 193 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS---SMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TSSCTT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HhcCCc
Confidence 455666667764 7777777777776652 111 234566666677777777777777776653 2321 1
Q ss_pred -------hHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH------HHHHHHHHHH--hcCChHHHHHHHHHHHccCC
Q 006955 474 -------HYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT------VWGALLGACR--IHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 474 -------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p 538 (624)
.|..+..++...|++++|+..+++..+ +.|+.. .+..++.++. ..+++++|...|+++..++|
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 345566667777777777777777665 334321 2333444443 34566777777766666666
Q ss_pred CC
Q 006955 539 NN 540 (624)
Q Consensus 539 ~~ 540 (624)
..
T Consensus 272 ~~ 273 (292)
T 1qqe_A 272 WK 273 (292)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=9.6e-10 Score=104.02 Aligned_cols=200 Identities=9% Similarity=-0.029 Sum_probs=143.9
Q ss_pred CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC-------CC--CchhHHHHHHHHHHcCChHHH
Q 006955 350 TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP-------IH--DIISWNSIICGLAYHGYAEKA 420 (624)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~a 420 (624)
+++.|...+..+ ...|...|++++|...|++.. .+ ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366776666554 345677788888877776654 11 135788899999999999999
Q ss_pred HHHHHHHHHCCCC-CC----hhhHHHHHHHhccc-ChHHHHHHHHHHhhhhcCCCCC-------cchHHHHHHHhhccCC
Q 006955 421 LELFERMRLTDFK-PD----DITFVGVLSACSYA-GLVDQGRYYFDCMKNKYFLQPR-------SAHYTCVVDLLGRFGL 487 (624)
Q Consensus 421 ~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~ 487 (624)
+..+++..+.... .+ ..++..+...|... |++++|+..+++..+. .|+ ..++..+...|.+.|+
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~---~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW---YAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH---HHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 9999988763111 11 24777888889986 9999999999998874 231 3568889999999999
Q ss_pred hHHHHHHHHHcccCCCCcCH------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch-----HHHHHHHHH--hc
Q 006955 488 IDEAMNLLNEIRADGIEVSP------TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV-----YLILTEMYL--SC 554 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~ 554 (624)
+++|+..+++..+....... ..+..+..++...|++++|...+++++++.|..+.. +..++.++. ..
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 99999999998874321111 156777788899999999999999999999975543 445666664 45
Q ss_pred CChHHHHHHHHHH
Q 006955 555 GRREDAKRIFAQM 567 (624)
Q Consensus 555 g~~~~A~~~~~~m 567 (624)
+++++|+..++++
T Consensus 254 ~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 254 EQLSEHCKEFDNF 266 (292)
T ss_dssp TTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccC
Confidence 6788888887544
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=6.4e-09 Score=96.16 Aligned_cols=184 Identities=11% Similarity=0.050 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC-----CCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 006955 354 GRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI-----HDIISWNSIICGLAYHGYAEKALELFERMR 428 (624)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 428 (624)
+...+++....+ +++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555544 34444445778888889999999999988742 244577788899999999999999999998
Q ss_pred HCCCCC-----ChhhHHHHHHH--hcc--cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcc
Q 006955 429 LTDFKP-----DDITFVGVLSA--CSY--AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 429 ~~g~~p-----~~~~~~~ll~~--~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (624)
+ ..| +..+...+..+ ... .++.++|..+|+++...+ |+...-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 577 35666666655 332 348999999999998753 553333445558899999999999999766
Q ss_pred cC-----CC---Cc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 500 AD-----GI---EV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 500 ~~-----g~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
+. .. .| ++.++..++......|+ .|.++++++.+..|++|.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 52 00 24 56677677766666787 889999999999998875543
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=8.5e-10 Score=103.76 Aligned_cols=227 Identities=11% Similarity=0.049 Sum_probs=160.1
Q ss_pred hhcCCCchHHHHHHHHhHHc-----C-CCC-CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh------CC-CCCcchhHH
Q 006955 310 LGENDLGEEGLKFFVQMKES-----G-PSP-DNATFTSVLTICSDLPTLDLGRQIHAQAIKI------AR-NQFTTVSNA 375 (624)
Q Consensus 310 ~~~~~~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 375 (624)
....|++++|+.+|++..+. + -.| ....+..+...+...|+++.|...+..+.+. +. +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 45679999999999997663 1 112 3457778888999999999999999988765 22 233557788
Q ss_pred HHHHhHhhCCHHHHHHHhccCCC-------C----CchhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-hh
Q 006955 376 MITMYARCGNIQSALLEFSSVPI-------H----DIISWNSIICGLAYHGYAEKALELFERMRLT------DFKPD-DI 437 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~ 437 (624)
+...|...|++++|...+++... + ...++..+...|...|++++|...++++.+. +-.|+ ..
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999987651 2 2457888899999999999999999999984 11332 35
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhc------CCCC-CcchHHHHHHHhhcc------CChHHHHHHHHHcccCCCC
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKY------FLQP-RSAHYTCVVDLLGRF------GLIDEAMNLLNEIRADGIE 504 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~g~~ 504 (624)
++..+...+...|++++|..+++++.+.. ...| ....+..+...+... ..+..+...++..... .+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CH
Confidence 77788889999999999999999988641 1123 233444444433332 2344455555544431 12
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 505 VSPTVWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 505 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
....++..+..+|...|++++|...++++++..
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 245678889999999999999999999988753
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.99 E-value=1.1e-09 Score=91.85 Aligned_cols=124 Identities=12% Similarity=0.022 Sum_probs=105.6
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHh
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRI 519 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 519 (624)
|...+...|++++|+..++.... ..| ++..+..+...|.+.|++++|++.|++.++ +.| ++.+|..+..++..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 44566778999999999998776 345 566677899999999999999999999987 455 68899999999999
Q ss_pred cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHH-HHHHHHC
Q 006955 520 HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRI-FAQMKEN 570 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 570 (624)
.|++++|+..++++++++|.++.++..++.+|...|++++|.+. +++..+.
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999877665 5777664
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.98 E-value=6.8e-09 Score=97.75 Aligned_cols=178 Identities=6% Similarity=-0.098 Sum_probs=144.1
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 386 IQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 386 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
.+.....+....+.+...+..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|...++++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 34455555555555666777888889999999999999999988 4564 46778888899999999999999999887
Q ss_pred hcCCCCCcchHHH-HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC--C
Q 006955 465 KYFLQPRSAHYTC-VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN--S 541 (624)
Q Consensus 465 ~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~ 541 (624)
. .|+...... ....+...++.++|+..+++..+.. +.++..+..+..++...|++++|...++++++.+|.+ +
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 4 465443332 2333667788888999999988742 4467899999999999999999999999999999987 7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
..+..|+.+|...|+.++|...+++...
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 8899999999999999999998887654
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=3.2e-08 Score=88.42 Aligned_cols=164 Identities=10% Similarity=-0.074 Sum_probs=137.1
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC----hHHHHHHHHHHhhhhcCCCCCcch
Q 006955 399 HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAG----LVDQGRYYFDCMKNKYFLQPRSAH 474 (624)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 474 (624)
.++.++..+...|...+++++|+.+|++..+.| +...+..+...|.. + +.++|.++|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 366778888888888999999999999998865 55667777777777 6 899999999998763 26777
Q ss_pred HHHHHHHhhc----cCChHHHHHHHHHcccCCCC-cCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCCchHH
Q 006955 475 YTCVVDLLGR----FGLIDEAMNLLNEIRADGIE-VSPTVWGALLGACRI----HNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 475 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
+..|...|.. .+++++|+++|++..+.|.. ..+..+..|...|.. .+++++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 8888888887 88999999999999985521 126788888888877 78999999999999998 55888999
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHHHHCC
Q 006955 546 ILTEMYLSC-G-----RREDAKRIFAQMKENG 571 (624)
Q Consensus 546 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~ 571 (624)
.|+.+|... | ++++|.+.+++..+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999864 3 8999999999998887
No 99
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.97 E-value=2.9e-08 Score=97.70 Aligned_cols=197 Identities=13% Similarity=0.011 Sum_probs=137.9
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCC-----CCCc----hhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC--CCh-h
Q 006955 374 NAMITMYARCGNIQSALLEFSSVP-----IHDI----ISWNSIICGLAYHGYAEKALELFERMRLT----DFK--PDD-I 437 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~--p~~-~ 437 (624)
+.+...+...|++++|...+++.. ..+. .++..+...+...|++++|...+++..+. +.. |.. .
T Consensus 57 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 136 (373)
T 1hz4_A 57 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHH
Confidence 334455566666666666665543 1111 23566778889999999999999987653 222 322 3
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcC-CCC--CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHH--
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYF-LQP--RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWG-- 511 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~-- 511 (624)
.+..+...+...|++++|...+++...... ..| ....+..+...+...|++++|...+++.....-.+ .+..+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 556677788999999999999999876421 111 13457788889999999999999999876431111 111222
Q ss_pred ---HHHHHHHhcCChHHHHHHHHHHHccCCCCCc----hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 512 ---ALLGACRIHNNIKVGEIAGERVMELEPNNSG----VYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 512 ---~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..+..+...|++++|...++++....|.++. .+..++.++...|++++|...+++....
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2334477899999999999999987764322 4678899999999999999999987653
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=1.4e-08 Score=83.02 Aligned_cols=133 Identities=15% Similarity=0.160 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHh
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLL 482 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 482 (624)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.... +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46778888889999999999999988753 3345677778888889999999999999988742 23677788899999
Q ss_pred hccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999988742 346778888999999999999999999999998884
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.96 E-value=4.2e-09 Score=87.75 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=93.3
Q ss_pred CCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 468 LQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 468 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
+.| +...+..+...+.+.|++++|++.|+++.+ +.| ++..|..+..++...|++++|...|+++++++|.++..+.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 556 577788899999999999999999999987 455 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 546 ILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.++.+|...|++++|...|++..+..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998764
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=5.9e-09 Score=90.18 Aligned_cols=159 Identities=7% Similarity=-0.030 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHH-
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDL- 481 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~- 481 (624)
+......+...|++++|...+++..+ ..|+ ...+..+...+...|++++|...++++.+. .|++..+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 44445556666667777766666655 2333 345556666666677777777777666553 2332222222111
Q ss_pred hhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC--CchHHHHHHHHHhcCChH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN--SGVYLILTEMYLSCGRRE 558 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 558 (624)
+...+...+|++.+++..+ ..| ++..+..+..++...|++++|...++++++..|.. +..+..++.++...|+.+
T Consensus 84 ~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 1122233346788888776 455 57788888899999999999999999999999864 558999999999999999
Q ss_pred HHHHHHHHHHH
Q 006955 559 DAKRIFAQMKE 569 (624)
Q Consensus 559 ~A~~~~~~m~~ 569 (624)
+|...+++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999887654
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=1e-08 Score=91.36 Aligned_cols=122 Identities=12% Similarity=0.020 Sum_probs=59.0
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHh
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRI 519 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 519 (624)
+..++...|++++|...+++..+. .| ++..+..+..+|...|++++|+..|++.++ +.| ++..|..+..++..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 444555555566665555555542 34 455555555555555666666666655554 233 34455555555443
Q ss_pred cCC--hHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 520 HNN--IKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 520 ~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.|+ .+.+...++++....| ....+..++.++...|++++|...|++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 332 2333344444332222 112334445555555566666666555543
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=1.1e-08 Score=106.82 Aligned_cols=160 Identities=11% Similarity=0.029 Sum_probs=126.1
Q ss_pred hCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHH
Q 006955 383 CGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYY 458 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 458 (624)
.|++++|+..+++.. +.+...|..+...+...|++++|.+.+++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999877 345678899999999999999999999999984 554 56888888899999999999999
Q ss_pred HHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc---CChHHHHHHHHHHH
Q 006955 459 FDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH---NNIKVGEIAGERVM 534 (624)
Q Consensus 459 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 534 (624)
+++..+. .| +...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+..++... |+.++|...+++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999884 46 67889999999999999999999999988742 33577888999999999 99999999999999
Q ss_pred ccCCCCCchHHHHH
Q 006955 535 ELEPNNSGVYLILT 548 (624)
Q Consensus 535 ~~~p~~~~~~~~l~ 548 (624)
+.+|.+...+..++
T Consensus 156 ~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 156 AQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTCCCSCHHHHTT
T ss_pred hcCCcccChHHHhC
Confidence 99998888888776
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=1.5e-08 Score=90.28 Aligned_cols=127 Identities=6% Similarity=-0.055 Sum_probs=99.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhh
Q 006955 406 SIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLG 483 (624)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 483 (624)
.+..+|...|++++|+..+++..+. .|+ ...+..+..++...|++++|...|+++.+ +.| ++..+..+..+|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 3888999999999999999999984 564 46888888899999999999999999998 457 6888888988887
Q ss_pred ccCC--hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 484 RFGL--IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 484 ~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
..|+ .+.+...++.... ..|....+..+..++...|++++|+..+++++++.|.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6654 4456666666552 2333334455566677889999999999999999994
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=7.4e-09 Score=83.62 Aligned_cols=108 Identities=8% Similarity=-0.029 Sum_probs=59.0
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+......+.+.|++++|++.|++..+. .| ++..|..+..+|.+.|++++|++.+++.++.. +.++..|..+..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3444445555555555555555555542 23 45555555556666666666666666555421 2234455555555
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
+...|++++|...|+++++++|.++.++..|..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 666666666666666666666655555555443
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.87 E-value=5.6e-09 Score=87.16 Aligned_cols=103 Identities=8% Similarity=-0.018 Sum_probs=88.6
Q ss_pred CCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHH
Q 006955 468 LQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLI 546 (624)
Q Consensus 468 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 546 (624)
+.| +...+..+...+...|++++|+..|++..... +.++..|..+..++...|++++|...++++++++|.++..+..
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 445 56677788888999999999999999987732 3467888888899999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.+|...|++++|.+.+++..+..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999887653
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=2.4e-08 Score=95.05 Aligned_cols=159 Identities=13% Similarity=-0.010 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCC--C--Cc
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDF---KPD--DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQ--P--RS 472 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p--~~ 472 (624)
.+|+.+...|...|++++|+..+++..+.-. .|. ..++..+...|.. |++++|+..+++..+...-. + ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 3577778888888999999998888765211 121 2467777788888 99999999999887642100 0 14
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccC----CCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch----
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV---- 543 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---- 543 (624)
.++..+..+|.+.|++++|++.+++..+. +..+. ...+..++.++...|++++|...+++++ ..|.....
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 57788999999999999999999987752 11121 2256666677788899999999999999 88865543
Q ss_pred -HHHHHHHHHhcCChHHHHHH
Q 006955 544 -YLILTEMYLSCGRREDAKRI 563 (624)
Q Consensus 544 -~~~l~~~~~~~g~~~~A~~~ 563 (624)
...++.++ ..|+.+.+.++
T Consensus 235 ~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHH-HhcCHHHHHHH
Confidence 44555555 56777766663
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=1.2e-08 Score=82.41 Aligned_cols=103 Identities=10% Similarity=0.043 Sum_probs=92.6
Q ss_pred CCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHH
Q 006955 468 LQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLI 546 (624)
Q Consensus 468 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 546 (624)
+.| ....+......|.+.|++++|++.|++.++.. +.++..|..+..++...|++++|+..++++++++|.++..|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 556 35667788999999999999999999988742 3468899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.+|...|++++|.+.|++..+..
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999987753
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=2e-08 Score=86.74 Aligned_cols=156 Identities=12% Similarity=-0.051 Sum_probs=120.7
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-hcc
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSA-CSY 448 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~ 448 (624)
...+...+.+.|++++|+..|++.. +.+...+..+...+...|++++|+..+++..+. .|+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 4456778889999999999999988 456778899999999999999999999998763 4443332222111 112
Q ss_pred cChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC---HHHHHHHHHHHHhcCChH
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS---PTVWGALLGACRIHNNIK 524 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~ 524 (624)
.+....|...+++..+ ..| ++..+..+..++...|++++|+..++++.+. .|+ +..+..+..++...|+.+
T Consensus 87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCCC
Confidence 2222346888888877 346 6888999999999999999999999998874 454 558889999999999999
Q ss_pred HHHHHHHHHHc
Q 006955 525 VGEIAGERVME 535 (624)
Q Consensus 525 ~a~~~~~~~~~ 535 (624)
+|...|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998764
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=3.1e-08 Score=103.45 Aligned_cols=146 Identities=9% Similarity=-0.079 Sum_probs=74.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHH
Q 006955 349 PTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFE 425 (624)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (624)
|++++|...++++.+.. +.+...+..+...|...|++++|++.+++.. +.+...|..+..+|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45556666666555432 2234455556666666666666666665544 2234455566666666666666666666
Q ss_pred HHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhcc---CChHHHHHHHHHccc
Q 006955 426 RMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRF---GLIDEAMNLLNEIRA 500 (624)
Q Consensus 426 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 500 (624)
+..+. .|+ ...+..+..++...|++++|.+.++++.+. .| +...+..+...+... |+.++|.+.+++..+
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 66553 333 345555556666666666666666666553 23 455555666666666 666666666666554
No 112
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=3.5e-08 Score=85.39 Aligned_cols=122 Identities=7% Similarity=0.020 Sum_probs=95.9
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH-HHhcCCh
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA-CRIHNNI 523 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~ 523 (624)
+...|++++|...+++..+. .| +...+..+...|...|++++|+..++++.+.. +.++..+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc
Confidence 45667888888888887764 34 67788888888889999999999998887632 2356677778777 7788888
Q ss_pred --HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 524 --KVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 524 --~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++|...++++++..|.++..+..++.+|...|++++|...+++..+..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999999999888889999999999999999999998887764
No 113
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.81 E-value=3.7e-08 Score=81.59 Aligned_cols=103 Identities=11% Similarity=-0.024 Sum_probs=88.9
Q ss_pred CCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHH
Q 006955 468 LQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLI 546 (624)
Q Consensus 468 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 546 (624)
+.| +...+..+...+.+.|++++|+..|++..... +.++..|..+..++...|++++|...++++++++|.++..+..
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 445 45666778888899999999999999988742 3467888889999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.+|...|++++|.+.+++..+..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999887653
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=7.5e-08 Score=86.10 Aligned_cols=131 Identities=13% Similarity=-0.032 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDL 481 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 481 (624)
.+..+...+...|++++|...+++. +.|+...+..+..++...|++++|...+++..+. .| +...+..+..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHH
Confidence 3556677788889999999888876 3667778888888888889999999988888874 34 67778888888
Q ss_pred hhccCChHHHHHHHHHcccCC--------------CCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 482 LGRFGLIDEAMNLLNEIRADG--------------IEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g--------------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
|...|++++|++.++++.+.. ..| ....+..+..++...|++++|...++++++..|.+
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888899999998888877642 111 12677778888888889999999988888888854
No 115
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.79 E-value=6.4e-08 Score=102.88 Aligned_cols=189 Identities=11% Similarity=-0.012 Sum_probs=146.4
Q ss_pred cCCCCcHHHHHHHHHHHH-------hCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcC
Q 006955 346 SDLPTLDLGRQIHAQAIK-------IARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHG 415 (624)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 415 (624)
...|++++|...++.+.+ ...+.+...+..+...|...|++++|+..|+++. +.+...|..+..++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 677888888888888771 1224456677788889999999999999998877 457778999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHH
Q 006955 416 YAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMN 493 (624)
Q Consensus 416 ~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 493 (624)
++++|+..|++..+ ..|+ ...+..+..++...|++++ .+.++++.+. .| +...|..+..+|.+.|++++|++
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998 4564 4678888889999999999 9999999873 46 67889999999999999999999
Q ss_pred HHHHcccCCCCcC-HHHHHHHHHHHHhcCC-----hHHHHHHHHHHHccCCCCCc
Q 006955 494 LLNEIRADGIEVS-PTVWGALLGACRIHNN-----IKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 494 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 542 (624)
.|+++.+ +.|+ ...+..+..++...|+ .+...+..+...+..+.++.
T Consensus 556 ~~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9999987 5675 5677777777766555 23334444444445454444
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=3.1e-07 Score=86.72 Aligned_cols=164 Identities=8% Similarity=-0.028 Sum_probs=125.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCChh----hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHH
Q 006955 406 SIICGLAYHGYAEKALELFERMRLTD-FKPDDI----TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYT 476 (624)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 476 (624)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667889999999999999988742 122211 2334666777888999999999999873211223 23688
Q ss_pred HHHHHhhccCChHHHHHHHHHccc----C-CCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------CchH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRA----D-GIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNN------SGVY 544 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~----~-g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 544 (624)
.+..+|...|++++|+..++++.+ . +..+. ..++..+..+|...|++++|...+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999873 1 12332 3478889999999999999999999999865432 5679
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHH
Q 006955 545 LILTEMYLSCGR-REDAKRIFAQMKE 569 (624)
Q Consensus 545 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 569 (624)
..++.+|...|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988764
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=3.7e-08 Score=93.81 Aligned_cols=174 Identities=9% Similarity=-0.005 Sum_probs=129.4
Q ss_pred hCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CC-C-hhhHHHHHHHhcccChHHHHHH
Q 006955 383 CGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDF---KP-D-DITFVGVLSACSYAGLVDQGRY 457 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p-~-~~~~~~ll~~~~~~g~~~~a~~ 457 (624)
.++++.|...|+ .....|...|++++|...+.+..+... .+ . ..++..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~-----------~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYA-----------KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 356666666543 345667778888888888877655211 11 1 2467778888999999999999
Q ss_pred HHHHhhhhcCC--CC--CcchHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHHHHHHHHHHHhcCChHHHHH
Q 006955 458 YFDCMKNKYFL--QP--RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 458 ~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~ 528 (624)
.+++..+...- .| ...++..+..+|.. |++++|++.+++..+. |..+ ...++..+...+...|++++|..
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987763210 11 24567888999988 9999999999987652 1111 14578888899999999999999
Q ss_pred HHHHHHccCCCCC------chHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 529 AGERVMELEPNNS------GVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 529 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
.+++++++.|.+. ..+..++.++...|++++|...+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999776543 267778888889999999999999887
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.75 E-value=8.1e-08 Score=90.32 Aligned_cols=132 Identities=8% Similarity=-0.024 Sum_probs=113.8
Q ss_pred ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHH
Q 006955 435 DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGAL 513 (624)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (624)
+...+..+...+...|++++|...++++.+. .| +...+..+...|.+.|++++|...++++.. ..|+.......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHH
Confidence 3456677778889999999999999999884 46 678899999999999999999999999987 46776544433
Q ss_pred HH-HHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 514 LG-ACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 514 ~~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.. .+...++.+.|...++++++..|.++..+..++.+|...|++++|...+.++.+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 33 36778889999999999999999999999999999999999999999999998864
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=7.6e-08 Score=82.05 Aligned_cols=128 Identities=9% Similarity=-0.058 Sum_probs=103.4
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+..+...+...|++++|...+++..+. .| +...+..+..++...|++++|++.+++..+.. +.++..+..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4555666677788888888888887763 34 67778888888999999999999999887742 3457788888899
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH--HHhcCChHHHHHHHHHHHH
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM--YLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 569 (624)
+...|++++|...++++++..|.++..+..+..+ +...|++++|.+.+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999999888887555554 8888999999999887654
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.75 E-value=2.1e-07 Score=83.96 Aligned_cols=159 Identities=11% Similarity=-0.019 Sum_probs=99.6
Q ss_pred HHHhHhhCCHHHHHHHhccCC--CCC----chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHh
Q 006955 377 ITMYARCGNIQSALLEFSSVP--IHD----IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI----TFVGVLSAC 446 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~ 446 (624)
...+.+.|++++|+..|+++. .|+ ...+..+..+|...|++++|+..|+++.+. .|+.. .+..+..++
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHHH
Confidence 344445555555555555443 121 123444555555666666666666665552 23221 222222222
Q ss_pred ------------------cccChHHHHHHHHHHhhhhcCCCCC-cchH-----------------HHHHHHhhccCChHH
Q 006955 447 ------------------SYAGLVDQGRYYFDCMKNKYFLQPR-SAHY-----------------TCVVDLLGRFGLIDE 490 (624)
Q Consensus 447 ------------------~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~ 490 (624)
...|+.++|...|+++.+. .|+ ...+ ..+...|.+.|++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 2356788888888887764 253 2222 245677889999999
Q ss_pred HHHHHHHcccCCCCcC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 006955 491 AMNLLNEIRADGIEVS-P---TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 542 (624)
|+..|+++++. .|+ + ..+..+..++...|+.++|...++++....|.+..
T Consensus 166 A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 166 VVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 99999998873 443 2 46788889999999999999999999988886543
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=2.8e-07 Score=87.01 Aligned_cols=167 Identities=7% Similarity=-0.043 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cc
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-----ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SA 473 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 473 (624)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++..+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3455667788899999999999888774322111 12334555677889999999999988753211112 34
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccC----CCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC------CC
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV--SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN------NS 541 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 541 (624)
+++.+...|...|++++|+..++++.+. +..+ ...++..+..+|...|++++|...+++++++.+. -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999987621 1111 1258888999999999999999999999986532 15
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDA-KRIFAQMKE 569 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 569 (624)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6789999999999999999 777877654
No 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=8.7e-08 Score=78.09 Aligned_cols=116 Identities=8% Similarity=-0.029 Sum_probs=80.9
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLG 515 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (624)
..+..+...+...|++++|...++++.+. .| +...+..+...|...|++++|++.++++.+.. +.+...+..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34555555666666666666666666552 24 55666777777777777777777777766532 335667777777
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006955 516 ACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGR 556 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 556 (624)
++...|++++|...++++++..|.++..+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 78888888888888888888888777778888777776653
No 123
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.69 E-value=1.2e-07 Score=74.45 Aligned_cols=100 Identities=14% Similarity=0.043 Sum_probs=86.3
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CCchHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN--NSGVYLILT 548 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~ 548 (624)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++++..|. ++..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 56677788888899999999999999887642 345778888888899999999999999999999998 888999999
Q ss_pred HHHHhc-CChHHHHHHHHHHHHCC
Q 006955 549 EMYLSC-GRREDAKRIFAQMKENG 571 (624)
Q Consensus 549 ~~~~~~-g~~~~A~~~~~~m~~~~ 571 (624)
.+|... |++++|.+.+++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999 99999999999887665
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.68 E-value=2e-06 Score=80.43 Aligned_cols=219 Identities=14% Similarity=0.138 Sum_probs=101.7
Q ss_pred cCCCc-hHHHHHHHHhHHcCCCCCH-HHHHHHHHHHcCCC--CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHH
Q 006955 312 ENDLG-EEGLKFFVQMKESGPSPDN-ATFTSVLTICSDLP--TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387 (624)
Q Consensus 312 ~~~~~-~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (624)
+.|.+ ++|+.++..++.. .|+. ..++.--..+...+ +++++...+..+.....+
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-------------------- 101 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-------------------- 101 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT--------------------
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc--------------------
Confidence 33433 4677777777664 4443 33444444444455 566666666665554322
Q ss_pred HHHHHhccCCCCCchhHHHHHHHH----HHc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHH--HHHHH
Q 006955 388 SALLEFSSVPIHDIISWNSIICGL----AYH---GYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVD--QGRYY 458 (624)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~ 458 (624)
+..+|+.-...+ ... +++++++.+++++.+.. +-|..+|+.-...+...|.++ ++.+.
T Consensus 102 ------------~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 102 ------------NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 223333322222 222 44455555555555421 122334443333333444444 55555
Q ss_pred HHHhhhhcCCCC-CcchHHHHHHHhhccCC------hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCh-HHHHHHH
Q 006955 459 FDCMKNKYFLQP-RSAHYTCVVDLLGRFGL------IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNI-KVGEIAG 530 (624)
Q Consensus 459 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~ 530 (624)
++++.+. .| |-..|+.-..++...|+ ++++++.+++++... +-|...|+.+...+...|.. +....++
T Consensus 169 ~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 169 VDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 5555542 23 44444444444444443 455555555544421 22444555554444444432 2233444
Q ss_pred HHHHccC---CCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 531 ERVMELE---PNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 531 ~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
+++.++. |.++..+..++.+|.+.|+.++|.++++.+.+
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4444443 44455555555555555555555555555543
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.67 E-value=9.7e-07 Score=78.67 Aligned_cols=160 Identities=7% Similarity=-0.201 Sum_probs=117.6
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCC-CCCchhHHHHHHHHHHcC----ChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVP-IHDIISWNSIICGLAYHG----YAEKALELFERMRLTDFKPDDITFVGVLS 444 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 444 (624)
+..+..+...|...+++++|+..|++.. ..++..+..+...|.. + ++++|..+|++..+.| +...+..+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 3344445566666666777766666655 3355667777777766 5 8899999999988754 4566667777
Q ss_pred Hhcc----cChHHHHHHHHHHhhhhcCCCCC---cchHHHHHHHhhc----cCChHHHHHHHHHcccCCCCcCHHHHHHH
Q 006955 445 ACSY----AGLVDQGRYYFDCMKNKYFLQPR---SAHYTCVVDLLGR----FGLIDEAMNLLNEIRADGIEVSPTVWGAL 513 (624)
Q Consensus 445 ~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (624)
.|.. .+++++|..++++..+. .|+ +..+..|...|.. .+++++|+++|++..+. ..++..+..|
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L 168 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA 168 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence 7766 78999999999998863 342 6788888888887 78999999999998874 3445567777
Q ss_pred HHHHHhc-C-----ChHHHHHHHHHHHccCC
Q 006955 514 LGACRIH-N-----NIKVGEIAGERVMELEP 538 (624)
Q Consensus 514 ~~~~~~~-g-----~~~~a~~~~~~~~~~~p 538 (624)
...|... | +.++|...++++.+...
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7777543 3 89999999999988764
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=1.9e-07 Score=74.94 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=87.5
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.++.++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 455666667777777777777777776631 2256677778888888888888888888877642 3456778888888
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888889999999999888888888888888887776554
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=5.7e-07 Score=80.27 Aligned_cols=123 Identities=13% Similarity=-0.060 Sum_probs=86.7
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHH
Q 006955 374 NAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVD 453 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 453 (624)
..+...+...|++++|+..|++...++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3456667777777777777777776677777777777777777777777777777642 223456666777777777777
Q ss_pred HHHHHHHHhhhhcCCCC-Cc----------------chHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 454 QGRYYFDCMKNKYFLQP-RS----------------AHYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p-~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
+|...++++.+. .| +. ..+..+..+|...|++++|.+.++++.+
T Consensus 89 ~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQ---LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHT---TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777763 23 22 5666777777777777777777777766
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=3e-08 Score=92.97 Aligned_cols=187 Identities=9% Similarity=-0.077 Sum_probs=125.2
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhc
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACS 447 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 447 (624)
.+..+...+.+.|++++|+..|++.. +.+...|..+..+|...|++++|+..+++..+. .|+ ...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34455666777777777777777655 336677888888888999999999999888873 454 457777888888
Q ss_pred ccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (624)
..|++++|...++++.+. .| +...+...+....+.......... .. ...++++.....+... ..|+.++|
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNSI-EE---RRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHHH-HH---TCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHHH-HH---HHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 899999999999888763 34 222222233322222211111111 11 1234444444444332 36899999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 006955 527 EIAGERVMELEPNNSGVYLILTEMYLSC-GRREDAKRIFAQMKE 569 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 569 (624)
...++++.+..|.+......+...+... +++++|.++|.+..+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999998777777777777766 778899999987755
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=1.6e-07 Score=76.07 Aligned_cols=117 Identities=10% Similarity=0.010 Sum_probs=93.7
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLG 515 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (624)
..+..+...+...|++++|...++++.+. .| +...+..+...+...|++++|.+.+++..+.. +.++..+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45556666777778888888888877764 24 66777888888888899999999988877642 335778888888
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006955 516 ACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 557 (624)
++...|++++|...++++.+..|.++..+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 899999999999999999999998888899999988888875
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=1.1e-07 Score=91.62 Aligned_cols=161 Identities=14% Similarity=0.065 Sum_probs=117.3
Q ss_pred CCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 384 GNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 384 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
+++++|+..++... +.+...|..+...|...|++++|+..|++..+. .|+...+ .. +.+..
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~---------~~--~~~~~--- 190 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF---------SN--EEAQK--- 190 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC---------CS--HHHHH---
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC---------Ch--HHHHH---
Confidence 44445555554443 123456667777777777777777777777763 3332110 00 11110
Q ss_pred HhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 461 CMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 461 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+.| ....|..+..+|.+.|++++|+..++++++.. +.++..|..+..++...|++++|...+++++++.|.
T Consensus 191 -------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 191 -------AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred -------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 011 25678889999999999999999999988742 336789999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCChHHH-HHHHHHHH
Q 006955 540 NSGVYLILTEMYLSCGRREDA-KRIFAQMK 568 (624)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 568 (624)
++.++..++.++...|++++| ...++.|.
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 44666664
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.4e-07 Score=76.13 Aligned_cols=99 Identities=8% Similarity=-0.013 Sum_probs=81.0
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
...+..+...+.+.|++++|+..|++..+.. +.++..|..+..++...|++++|...++++++++|.++..+..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456667778888888888888888877632 335778888888888889999999999999999998888899999999
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 006955 552 LSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~~~ 571 (624)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999888876653
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.64 E-value=1.6e-07 Score=78.12 Aligned_cols=104 Identities=9% Similarity=-0.077 Sum_probs=89.0
Q ss_pred CCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHH
Q 006955 432 FKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPT 508 (624)
Q Consensus 432 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~ 508 (624)
+.|+. ..+..+...+.+.|++++|...|+++.+ +.| ++..|..+..+|...|++++|+..|+++.+ +.| ++.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~ 105 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYT 105 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcH
Confidence 44544 4667777888999999999999999987 456 788899999999999999999999999887 455 577
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
.|..+..++...|++++|...|++++++.|++
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 88999999999999999999999999999854
No 133
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=6.3e-06 Score=77.06 Aligned_cols=239 Identities=11% Similarity=0.054 Sum_probs=164.5
Q ss_pred HHHHhcCC-hHHHHHHHhhcCCC---CceehhhhhhHhhcCC--CchHHHHHHHHhHHcCCCCCH-HHHHHHHHHHcCCC
Q 006955 277 VGYFEMGE-VGSAIKVFELMTTR---DVTVWNVMIFGLGEND--LGEEGLKFFVQMKESGPSPDN-ATFTSVLTICSDLP 349 (624)
Q Consensus 277 ~~~~~~g~-~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~ 349 (624)
.+..+.|. .++|+.+++.+..- +..+|+.--..+...+ ++++++..++.+.... |.. ..++.--..+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL---- 113 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLII---- 113 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHH----
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHH----
Confidence 33445555 46899999888643 4456777777777777 9999999999998763 332 2332211111
Q ss_pred CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChH--HHHHHH
Q 006955 350 TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAE--KALELF 424 (624)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~a~~~~ 424 (624)
..+ +......+++++++.+++++. +.+..+|+.-...+...|.++ ++++.+
T Consensus 114 ---------~~~---------------~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 114 ---------GQI---------------MELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp ---------HHH---------------HHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ---------HHH---------------HHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 000 000000134555555555554 446677887777778888888 999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHhcccCh------HHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHH-HHHHHH
Q 006955 425 ERMRLTDFKPDDITFVGVLSACSYAGL------VDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDE-AMNLLN 496 (624)
Q Consensus 425 ~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~ 496 (624)
+++.+.. .-|...|+.-...+...|. ++++++.++++... .| |...|+.+...+.+.|+... +..+..
T Consensus 170 ~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 170 DKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 9999853 3344567655555556565 88999999998874 46 88899999888888887544 566777
Q ss_pred HcccCC--CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCCCchHHHHHH
Q 006955 497 EIRADG--IEVSPTVWGALLGACRIHNNIKVGEIAGERVME-LEPNNSGVYLILTE 549 (624)
Q Consensus 497 ~~~~~g--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~ 549 (624)
++.+.+ -..++..+..+..++...|+.++|.++++.+.+ .+|.....+...+.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 777632 134678899999999999999999999999996 79977666665543
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.59 E-value=1.1e-07 Score=79.26 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=92.2
Q ss_pred HHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC
Q 006955 424 FERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD 501 (624)
Q Consensus 424 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (624)
++++.. +.|+. ..+..+...+...|++++|...|+++... .| ++..|..+..+|...|++++|++.|+++.+
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~- 83 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV- 83 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 444443 34543 45666777888899999999999988874 46 778888899999999999999999999887
Q ss_pred CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 502 GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 502 g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
+.| ++..+..+..++...|++++|...+++++++.|.++....
T Consensus 84 -l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 84 -MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp -HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred -cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 345 5778888899999999999999999999999997776543
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.56 E-value=1.6e-07 Score=75.03 Aligned_cols=97 Identities=12% Similarity=-0.015 Sum_probs=84.4
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
..+..+...+.+.|++++|+..+++.++ ..| ++..|..+..++...|++++|+..++++++++|.++..+..++.+|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455677788899999999999999887 345 6778888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 006955 552 LSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~~~ 571 (624)
...|++++|...+++..+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887653
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=3.5e-07 Score=80.90 Aligned_cols=156 Identities=8% Similarity=-0.057 Sum_probs=90.4
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhc---CCCC-CcchHHHHHHHhhccCCh
Q 006955 413 YHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKY---FLQP-RSAHYTCVVDLLGRFGLI 488 (624)
Q Consensus 413 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~ 488 (624)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+.. +..| ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566666643333221 11123455555556666666666666666555421 1112 345566677777777777
Q ss_pred HHHHHHHHHcccC----CCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CC----chHHHHHHHHHhcCC
Q 006955 489 DEAMNLLNEIRAD----GIEV--SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN--NS----GVYLILTEMYLSCGR 556 (624)
Q Consensus 489 ~~A~~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~g~ 556 (624)
++|.+.+++..+. +-.| ....+..+...+...|++++|...++++++..+. ++ .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777765542 1111 1335666667777788888888888877764321 21 235677888888888
Q ss_pred hHHHHHHHHHHHH
Q 006955 557 REDAKRIFAQMKE 569 (624)
Q Consensus 557 ~~~A~~~~~~m~~ 569 (624)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777654
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.55 E-value=5.1e-07 Score=73.99 Aligned_cols=100 Identities=9% Similarity=-0.050 Sum_probs=87.1
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
+...+..+...+...|++++|+..+++..+.. +.++..|..+..++...|++++|...++++++..|.++..+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 57778888889999999999999999887742 33577888888899999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 006955 551 YLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 551 ~~~~g~~~~A~~~~~~m~~~~ 571 (624)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999887654
No 138
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.53 E-value=2e-06 Score=87.05 Aligned_cols=354 Identities=8% Similarity=-0.056 Sum_probs=172.4
Q ss_pred HcC-ChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCC--CCcchHHHHHHHHHhcCC-hHHHHHHHhh
Q 006955 188 DNG-CVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE--TCEKTWNSIISVLIRNGL-VKEAHSYLEK 263 (624)
Q Consensus 188 ~~g-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~-~~~a~~~~~~ 263 (624)
+.| +++.|..+|+.+...=+ .|+++.+..+|+.... |+...|...+....+.++ .+....+|+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P------------~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYM------------SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp ------CCHHHHHHHHHHHHH------------TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCC------------CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 345 37777777777654111 1889999999999886 777788888777766653 3444555555
Q ss_pred cC------CCCcchhhHHHHHHH----hcCChHHHHHHHhhcCCCCceehhhhhhHhhc---C--------------CCc
Q 006955 264 YP------YSNIASWTNVIVGYF----EMGEVGSAIKVFELMTTRDVTVWNVMIFGLGE---N--------------DLG 316 (624)
Q Consensus 264 ~~------~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~--------------~~~ 316 (624)
+. +.+...|...+..+. ..++++.+.++|++...--...+..+-..|.. . +.+
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y 153 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIF 153 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHH
Confidence 44 334566777666544 24567788888887754211111122111111 0 111
Q ss_pred hHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCC--CC-----cHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHH
Q 006955 317 EEGLKFFVQMKESGPSPDNATFTSVLTICSDL--PT-----LDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA 389 (624)
Q Consensus 317 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (624)
..|..+++++...--..+...|...+.--... +- .+.+..+++.++... +....++-..+..+.+.|+++.|
T Consensus 154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~a 232 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKA 232 (493)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 22233333322110001122232222221111 11 123445566555532 33344555555556666666666
Q ss_pred HHHhccCC--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC---hhhHHHHHHHhcccChHHHH
Q 006955 390 LLEFSSVP--IHDIISWNSIICGLAYHGYAEKALELFERMRLTD---------FKPD---DITFVGVLSACSYAGLVDQG 455 (624)
Q Consensus 390 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---------~~p~---~~~~~~ll~~~~~~g~~~~a 455 (624)
..++++.. +.+...|. .|+...+.++. ++.+.+.- ..+. ...|...+....+.++.+.|
T Consensus 233 r~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 233 KKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 66665443 11222221 12221111111 22222110 0011 12344444444455667777
Q ss_pred HHHHHHhhhhcCCCCCcchHHHHHHHhhccC-ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 456 RYYFDCMKNKYFLQPRSAHYTCVVDLLGRFG-LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVM 534 (624)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 534 (624)
+.+|+++ +.. .++...|...+..-...+ +.+.|.++|+...+. .+-++..|...+.-....|+.+.|..+++++
T Consensus 306 R~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~- 380 (493)
T 2uy1_A 306 RKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRL- 380 (493)
T ss_dssp HHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-
T ss_pred HHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 7777776 321 112233332222222223 577777777776653 2223445555565556677777777777776
Q ss_pred ccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 535 ELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 535 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
+.....+...+..-...|+.+.+.++++++..
T Consensus 381 ---~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 ---EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22344566666656666777777777777654
No 139
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.52 E-value=6.2e-06 Score=83.52 Aligned_cols=201 Identities=9% Similarity=-0.034 Sum_probs=127.5
Q ss_pred HHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHH-HHHhccC
Q 006955 318 EGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA-LLEFSSV 396 (624)
Q Consensus 318 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 396 (624)
.+..+|+++.... +.+...|...+.-+...|+++.|..++...... |.+...+. .|+...+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 4566777766542 334555555555666677777888888777776 33332222 12221111111 1111111
Q ss_pred C------------CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh-cccChHHHHHHHHHHhh
Q 006955 397 P------------IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC-SYAGLVDQGRYYFDCMK 463 (624)
Q Consensus 397 ~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~ 463 (624)
. ......|...+..+.+.++.+.|..+|++. .. ..++...|......- ...++.+.|..+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 111245777777777788899999999999 32 122333443222211 12346999999999999
Q ss_pred hhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 464 NKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 464 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
+.. | ++..+...++.....|+.+.|..+|+++.. ....|...+.--...|+.+.+..++++..+
T Consensus 348 ~~~---~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKH---PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 864 4 455667788888899999999999999842 467888888777788999999999988885
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=4e-07 Score=77.44 Aligned_cols=107 Identities=12% Similarity=-0.046 Sum_probs=84.8
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALL 514 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 514 (624)
..+..+...+...|++++|+..|++..+. .| +...|..+..+|.+.|++++|+..+++.++. .| +...|..+.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 46667777888888888888888888874 35 6777888888888888888888888888773 44 477888888
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 515 GACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 515 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
.++...|++++|...+++++++.|.++..+....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 8888888888888888888888888877655444
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=4.6e-07 Score=73.10 Aligned_cols=97 Identities=6% Similarity=-0.055 Sum_probs=82.9
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc-------h
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG-------V 543 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~ 543 (624)
...+..+...+.+.|++++|++.|++.++ +.| ++..|..+..+|...|++++|+..+++++++.|.++. +
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34566788899999999999999999887 455 5778889999999999999999999999998886654 5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 544 YLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
|..++.+|...|++++|++.+++....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777888899999999999999987764
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.50 E-value=5.3e-07 Score=77.77 Aligned_cols=128 Identities=9% Similarity=0.011 Sum_probs=100.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHH-hhccCCh-
Q 006955 412 AYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDL-LGRFGLI- 488 (624)
Q Consensus 412 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 488 (624)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+. .| +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 34677888888888887742 334567888888889999999999999998874 35 67778888888 7788998
Q ss_pred -HHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchH
Q 006955 489 -DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 489 -~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
++|.+.++++.+.. +.++..+..+..++...|++++|...++++++..|.++...
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999988742 33577888899999999999999999999999999776543
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.50 E-value=3.3e-07 Score=75.77 Aligned_cols=106 Identities=9% Similarity=-0.049 Sum_probs=84.3
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+..+...+...|++++|...|+++... .| +...|..+..+|.+.|++++|+..+++..+.. +.++..+..+..+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 4555666777888888888888888773 45 67778888889999999999999999988742 3356778888888
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHH
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLIL 547 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 547 (624)
+...|++++|...+++++++.|.++......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 8999999999999999999998777665444
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=8.3e-07 Score=72.10 Aligned_cols=100 Identities=10% Similarity=0.003 Sum_probs=90.5
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
+...+..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|...++++++..|.++..+..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 46678889999999999999999999988742 33678899999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 006955 551 YLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 551 ~~~~g~~~~A~~~~~~m~~~~ 571 (624)
|...|++++|.+.+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999987753
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=8.5e-07 Score=70.18 Aligned_cols=109 Identities=13% Similarity=0.011 Sum_probs=60.7
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+..+...+...|++++|...+++.... .| +...+..+...+...|++++|...+++..+.. +.++..+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3344444555555555555555555542 23 45555555666666666666666666655421 2235555566666
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
+...|++++|...++++.+..|.++..+..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6666666666666666666666555555554443
No 146
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=5.2e-06 Score=78.27 Aligned_cols=161 Identities=7% Similarity=-0.106 Sum_probs=121.0
Q ss_pred HHHHhHhhCCHHHHHHHhccCCCC---Cc------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHH
Q 006955 376 MITMYARCGNIQSALLEFSSVPIH---DI------ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-----ITFVG 441 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ 441 (624)
.+..+...|++++|...+++.... ++ ..+..+...+...+++++|+..+++..+.....+. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788899999999998876521 11 12334666677778999999999999884332222 26888
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhc----CCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC----CCCcC-HHHHH
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKY----FLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEVS-PTVWG 511 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~ 511 (624)
+..+|...|++++|..+++++.+.. +..| ...++..+...|.+.|++++|++.+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999988521 1112 2457888999999999999999999987642 22222 56888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHcc
Q 006955 512 ALLGACRIHNN-IKVGEIAGERVMEL 536 (624)
Q Consensus 512 ~l~~~~~~~g~-~~~a~~~~~~~~~~ 536 (624)
.+..++...|+ +++|...+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999994 69999999999873
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=5.8e-07 Score=72.47 Aligned_cols=109 Identities=7% Similarity=-0.089 Sum_probs=84.2
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLG 515 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 515 (624)
.+......+...|++++|...|++..+. .| +...|..+..+|.+.|++++|+..+++..+. .| ++..|..+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 4555566677778888888888887763 35 6777888888888888888888888888773 44 5778888888
Q ss_pred HHHhcCChHHHHHHHHHHHccC------CCCCchHHHHHHHH
Q 006955 516 ACRIHNNIKVGEIAGERVMELE------PNNSGVYLILTEMY 551 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 551 (624)
++...|++++|...+++++++. |.++.....+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888999999999999999888 76666666665544
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=5e-07 Score=79.61 Aligned_cols=171 Identities=7% Similarity=-0.092 Sum_probs=106.8
Q ss_pred HhHhhCCHHHHHHHhccCCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHH
Q 006955 379 MYARCGNIQSALLEFSSVPI---HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQG 455 (624)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 455 (624)
.....|+++.+.+.++.... .....+..+...+...|++++|+..|++..+. .|+...+... ....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~- 81 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD- 81 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH-
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH-
Confidence 34445555666555554331 13345666667777777888888877777763 3332111000 0000
Q ss_pred HHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 456 RYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
-... .....+..+..+|...|++++|+..+++..+.. +.++..+..+..++...|++++|...++++++
T Consensus 82 ------~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 ------KKKN----IEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp ------HHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0000 013567788889999999999999999988742 34677888999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCChHHHH-HHHHHHHHCC
Q 006955 536 LEPNNSGVYLILTEMYLSCGRREDAK-RIFAQMKENG 571 (624)
Q Consensus 536 ~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 571 (624)
+.|.++.++..+..++...|+.+++. ..+..|...+
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999988888777 5566555443
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=8e-07 Score=70.34 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=88.7
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
...+..++..+...|++++|.+.+++..+.. +.++..+..+..++...|++++|...++++.+..|.++..+..++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4567778889999999999999999988742 346788899999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 006955 552 LSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~~~ 571 (624)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999887654
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=7.6e-07 Score=81.21 Aligned_cols=124 Identities=7% Similarity=-0.092 Sum_probs=75.2
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH----HHHHHHHHHH
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP----TVWGALLGAC 517 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~ 517 (624)
+...+...|++++|.+.|+.+... .|+......+...+.+.+++++|+..|+.... .|++ ..+..+..++
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcccHHHHHHHHHHHH
Confidence 344556667777777777666542 24222444555566677777777777765543 2222 2455566666
Q ss_pred HhcCChHHHHHHHHHHHccC--CC-CCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 518 RIHNNIKVGEIAGERVMELE--PN-NSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 518 ~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++.+..
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777777777777776432 32 33456667777777777777777777776653
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.47 E-value=1e-06 Score=70.51 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=89.5
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 5677888999999999999999999988742 346778899999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 006955 552 LSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~~~ 571 (624)
...|++++|...++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999987753
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.45 E-value=1.1e-06 Score=74.77 Aligned_cols=94 Identities=11% Similarity=0.029 Sum_probs=45.4
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
..+..+...+.+.|++++|++.|++.++. .| ++..|..+..++...|++++|+..++++++++|.++..+..++.+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33444444444555555555555544432 22 3444444444445555555555555555555554444555555555
Q ss_pred HhcCChHHHHHHHHHHH
Q 006955 552 LSCGRREDAKRIFAQMK 568 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~ 568 (624)
...|++++|.+.+++..
T Consensus 90 ~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 55555555555444443
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=2.5e-06 Score=80.50 Aligned_cols=163 Identities=7% Similarity=-0.114 Sum_probs=120.2
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCC---CCCc------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC---CC--hhhH
Q 006955 374 NAMITMYARCGNIQSALLEFSSVP---IHDI------ISWNSIICGLAYHGYAEKALELFERMRLTDFK---PD--DITF 439 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~---p~--~~~~ 439 (624)
...+..+...|++++|.+.+++.. +... ..+..+...+...|++++|+..+++..+.... +. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 345677888899999988886543 1111 22344556677889999999999998763211 11 2477
Q ss_pred HHHHHHhcccChHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHhhccCChHHHHHHHHHcccCC----CCc-CHHH
Q 006955 440 VGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-----SAHYTCVVDLLGRFGLIDEAMNLLNEIRADG----IEV-SPTV 509 (624)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~~~~ 509 (624)
+.+...|...|++++|...++++.+.....|+ ..++..+...|...|++++|++.+++..+.. ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 88888999999999999999998732111232 2578889999999999999999999876521 111 1668
Q ss_pred HHHHHHHHHhcCChHHH-HHHHHHHHcc
Q 006955 510 WGALLGACRIHNNIKVG-EIAGERVMEL 536 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 536 (624)
+..+..++...|++++| ...++++..+
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 88899999999999999 8889988763
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.44 E-value=6.2e-07 Score=72.33 Aligned_cols=101 Identities=9% Similarity=0.008 Sum_probs=61.6
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--------HHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--------PTV 509 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~~~ 509 (624)
+..+...+.+.|++++|+..|+++.+ +.| +...|..+..+|...|++++|++.+++.++ +.|+ ..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHH
Confidence 34455555666666666666666655 234 455566666666666666666666666554 2221 124
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
|..+..++...|++++|+..|+++++..| ++....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 55566667777788888888887777776 444433
No 155
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.43 E-value=1.1e-06 Score=71.12 Aligned_cols=92 Identities=16% Similarity=0.074 Sum_probs=61.3
Q ss_pred HHHHHhhccCChHHHHHHHHHcccCCCCcC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---CchHHHHHH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEVS-P---TVWGALLGACRIHNNIKVGEIAGERVMELEPNN---SGVYLILTE 549 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 549 (624)
.+...+...|++++|.+.++++.+. .|+ + ..+..+..++...|++++|...++++++..|.+ +..+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3455566677777777777766552 232 2 355666666777777777777777777777766 555777777
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 006955 550 MYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 550 ~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+|...|++++|...++++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=2.1e-06 Score=71.25 Aligned_cols=109 Identities=10% Similarity=-0.054 Sum_probs=59.7
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGAL 513 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (624)
.+..+...+...|++++|...+++..+ ..|+ ...+..+...|...|++++|++.+++..+.. +.++..+..+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 334444444555555555555555443 2233 3445555556666666666666666655421 2245555566
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
..++...|++++|...++++++..|.++..+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 6666666666666666666666666555555554444
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.43 E-value=1.8e-06 Score=73.18 Aligned_cols=97 Identities=9% Similarity=0.058 Sum_probs=74.7
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccC--------C--------CCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRAD--------G--------IEV-SPTVWGALLGACRIHNNIKVGEIAGERVMEL 536 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------g--------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 536 (624)
.+......+.+.|++++|+..|.+.++. . ..| +...|..+..++...|++++|...+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3445556666667777777666665542 0 022 2457778888888999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 537 EPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 537 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+|.++..|..++.+|...|++++|...+++..+.
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999888775
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.9e-06 Score=71.56 Aligned_cols=99 Identities=8% Similarity=0.022 Sum_probs=90.1
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLI 546 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 546 (624)
+...+..+...+...|++++|++.+++..+ ..|+ ...+..+..++...|++++|...++++++..|.++..+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 566788889999999999999999999887 4566 6788888899999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.+|...|++++|...+++..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999987753
No 159
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.38 E-value=3.4e-07 Score=72.74 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=57.7
Q ss_pred cCChHHHHHHHHHcccCCC-Cc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHH
Q 006955 485 FGLIDEAMNLLNEIRADGI-EV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKR 562 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 562 (624)
.|++++|+..|++.++.+. .| ++..+..+..++...|++++|...++++++..|.++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4667777777777766321 13 345666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHC
Q 006955 563 IFAQMKEN 570 (624)
Q Consensus 563 ~~~~m~~~ 570 (624)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776554
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.38 E-value=1.4e-06 Score=70.38 Aligned_cols=100 Identities=11% Similarity=0.042 Sum_probs=90.1
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
+...+..+...+...|++++|.+.+++..... +.++..+..+..++...|++++|...++++.+..|.++..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 56677888999999999999999999988742 34678888999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 006955 551 YLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 551 ~~~~g~~~~A~~~~~~m~~~~ 571 (624)
|...|++++|.+.+++..+..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999987763
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=1.3e-06 Score=71.47 Aligned_cols=101 Identities=8% Similarity=-0.107 Sum_probs=79.4
Q ss_pred ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHH
Q 006955 435 DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGAL 513 (624)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (624)
+...+..+...+...|++++|...+++..+. .| +...+..+..+|...|++++|+..+++..+.. +.++..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 4456677777778888888888888887764 34 56778888888888888888888888887642 3357788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
..++...|++++|...++++++..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888889999999999999888876
No 162
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.37 E-value=1.4e-06 Score=71.49 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=70.0
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCcC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHcc-------C
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVS-------------PTVWGALLGACRIHNNIKVGEIAGERVMEL-------E 537 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 537 (624)
....+...|++++|+..|++.++ +.|+ ...|..+..++...|++++|+..+++++++ +
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34444455555555555555443 2232 338888888889999999999999999998 9
Q ss_pred CCCCchH----HHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 538 PNNSGVY----LILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 538 p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
|+++..| ...+.++...|++++|+..|++..+.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9998899 99999999999999999999988765
No 163
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.36 E-value=2.8e-06 Score=77.48 Aligned_cols=139 Identities=14% Similarity=-0.037 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC--cchHHHHHHH
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR--SAHYTCVVDL 481 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 481 (624)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... ..|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 344566778889999999999888763 455544445555788899999999999866542 1121 2367778889
Q ss_pred hhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLIL 547 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 547 (624)
+...|++++|+..|++.......|. +..+.....++...|+.++|...|+++...+|. +.....|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 9999999999999999875333253 346677777888999999999999999999995 5545444
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.36 E-value=4.2e-06 Score=70.96 Aligned_cols=129 Identities=6% Similarity=-0.122 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHH
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVD 480 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 480 (624)
..|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+. .| +...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 357777888899999999999999988742 334567888888899999999999999998874 35 6778889999
Q ss_pred HhhccCChHHHHHHHHHcccCCCCcCHHHHHHHH--HHHHhcCChHHHHHHHHHHHc
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL--GACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~ 535 (624)
++...|++++|.+.++++.+.. +.+...+..+. ..+...|++++|...+++...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999988742 22455554333 347788999999999888765
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=8.5e-07 Score=78.14 Aligned_cols=121 Identities=12% Similarity=-0.015 Sum_probs=89.4
Q ss_pred cccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----------------HHHH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----------------PTVW 510 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~ 510 (624)
...|+++.+.+.++..... .......+..+...+...|++++|++.|++..+.. +.+ ...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHH
Confidence 3345555555554432221 01134556677778888888888888888877631 112 2678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 511 GALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..+..++...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999999999999999998775
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.33 E-value=9.2e-07 Score=89.45 Aligned_cols=119 Identities=9% Similarity=-0.056 Sum_probs=100.0
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhc
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIH 520 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 520 (624)
...+.+.|++++|.+.++++.+. .| +...|..+..+|.+.|++++|++.+++..+. .| ++..+..+..++...
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34567789999999999998874 46 6888999999999999999999999998874 45 577899999999999
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHH--HHhcCChHHHHHHHHH
Q 006955 521 NNIKVGEIAGERVMELEPNNSGVYLILTEM--YLSCGRREDAKRIFAQ 566 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 566 (624)
|++++|...++++++..|.++..+..++.+ +...|++++|.+.+++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999888 8889999999999873
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.31 E-value=4e-06 Score=65.43 Aligned_cols=101 Identities=19% Similarity=0.065 Sum_probs=78.3
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc--CHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV--SPTVWGAL 513 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l 513 (624)
..+..+...+...|++++|...++++.+. .| +...+..+...+...|++++|.+.+++..+.. +. +...+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45566666777788888888888887764 24 56677788888888889999998888887642 23 47788888
Q ss_pred HHHHHhc-CChHHHHHHHHHHHccCCCCC
Q 006955 514 LGACRIH-NNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 514 ~~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 541 (624)
..++... |++++|...++++.+..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888888 999999999999988888654
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=2.1e-06 Score=75.76 Aligned_cols=156 Identities=14% Similarity=0.015 Sum_probs=109.9
Q ss_pred hhCCHHHHHH---HhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHhcccChHH
Q 006955 382 RCGNIQSALL---EFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLT----DFKPD-DITFVGVLSACSYAGLVD 453 (624)
Q Consensus 382 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~ 453 (624)
..|++++|.+ .+.........++..+...+...|++++|...+++..+. |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777776 554433334567788888888999999999999887652 22222 246677777888999999
Q ss_pred HHHHHHHHhhhhcCCCC-C----cchHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHHHHHHHHHHHhcCCh
Q 006955 454 QGRYYFDCMKNKYFLQP-R----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTVWGALLGACRIHNNI 523 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~ 523 (624)
+|...+++..+...-.+ + ...+..+...+...|++++|...+++..+. +..+ ...++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 99999988776421122 2 345778888999999999999999887642 2111 123567788889999999
Q ss_pred HHHHHHHHHHHccC
Q 006955 524 KVGEIAGERVMELE 537 (624)
Q Consensus 524 ~~a~~~~~~~~~~~ 537 (624)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=2.1e-06 Score=68.50 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=72.0
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGA 516 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 516 (624)
+..+...+.+.|++++|...++++.+. .| +...|..+..++...|++++|+..+++..+ +.| ++..+..+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 444555677778888888888887763 45 677778888888888888888888888777 445 56677888888
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCC
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
+...|++++|...++++++..|.++
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888888888543
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=2.2e-06 Score=69.21 Aligned_cols=99 Identities=10% Similarity=0.048 Sum_probs=83.9
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------CchH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN-------SGVY 544 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~ 544 (624)
...+..+...+...|++++|...+++..+.. +.++..+..+...+...|++++|...++++.+..|.+ +.++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456778888888999999999999887642 3467788888888999999999999999999987765 7789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 545 LILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
..++.+|...|++++|.+.+++..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999887753
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.26 E-value=3.6e-06 Score=84.72 Aligned_cols=163 Identities=10% Similarity=0.015 Sum_probs=110.9
Q ss_pred CCHHHHHHHhccCCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 384 GNIQSALLEFSSVPI---HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 384 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
+++++|+..|+.... .....|..+...+.+.|++++|+..|++..+. .|+...+ .+ +...
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~~-~~~~---- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------SE-KESK---- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------CH-HHHH----
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------Ch-HHHH----
Confidence 344445544444331 13345666667777777777777777777662 3332110 00 0000
Q ss_pred HhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 461 CMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 461 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
+... -....|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++++++|.+
T Consensus 311 ~~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 311 ASES-----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 0000 125678889999999999999999999988742 3367889999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCChHHHHH-HHHHHHH
Q 006955 541 SGVYLILTEMYLSCGRREDAKR-IFAQMKE 569 (624)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 569 (624)
..++..++.++...|+++++.+ .+..|..
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998875 5555543
No 172
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.26 E-value=5.6e-06 Score=79.58 Aligned_cols=142 Identities=8% Similarity=-0.020 Sum_probs=82.7
Q ss_pred CcchhHHHHHHhHhhCCHHHHHHHhccCC--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 369 FTTVSNAMITMYARCGNIQSALLEFSSVP--IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
+...+..+...|.+.|++++|+..|++.. .|+...+ ..+.+..+ ..+ ....+..+..++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~~-~~~-------~~~~~~nla~~~ 206 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-----------SNEEAQKA-QAL-------RLASHLNLAMCH 206 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSHHHHHH-HHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-----------ChHHHHHH-HHH-------HHHHHHHHHHHH
Confidence 34567778899999999999999998776 2222000 00111100 000 013444555555
Q ss_pred cccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIK 524 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~ 524 (624)
...|++++|+..++++.+. .| +...+..+..+|...|++++|+..|+++.+ +.| +...+..+..++...|+.+
T Consensus 207 ~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665552 34 556666666667777777777777776665 334 4556666666666666666
Q ss_pred HH-HHHHHHHH
Q 006955 525 VG-EIAGERVM 534 (624)
Q Consensus 525 ~a-~~~~~~~~ 534 (624)
+| ...++++.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66 33455544
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.26 E-value=2.3e-06 Score=72.15 Aligned_cols=132 Identities=8% Similarity=-0.035 Sum_probs=86.9
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTV 509 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~ 509 (624)
+..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++..+. +..+ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444555555566665555555442100011 235667777888888888888888776542 1111 1446
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCC------CCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVMELEPN------NSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+..+..++...|++++|...++++++..+. .+..+..++.+|...|++++|.+.+++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 677777888899999999999888875321 2356888899999999999999999887653
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=1.8e-06 Score=83.06 Aligned_cols=148 Identities=12% Similarity=0.045 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDL 481 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 481 (624)
..+..+...+...|++++|...|++... ..|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3455666667777888888888888776 3454332 233444444433221 2367889999
Q ss_pred hhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH-HhcCChHH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY-LSCGRRED 559 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~ 559 (624)
|.+.|++++|+..+++.++. .| +...|..+..++...|++++|...+++++++.|.++.++..|..+. ...+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998873 45 6788999999999999999999999999999999999999988884 45577888
Q ss_pred HHHHHHHHHHCC
Q 006955 560 AKRIFAQMKENG 571 (624)
Q Consensus 560 A~~~~~~m~~~~ 571 (624)
+...+.+|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 888888886654
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.25 E-value=7.8e-06 Score=65.89 Aligned_cols=104 Identities=9% Similarity=-0.074 Sum_probs=74.8
Q ss_pred HHHHHhcccChHHHHHHHHHHhhhhcCCCCC-c---chHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHHHHH
Q 006955 441 GVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-S---AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTVWGA 512 (624)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ 512 (624)
.+...+...|++++|...++++.+. .|+ . ..+..+..+|...|++++|+..++++.+. .|+ +..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHH
Confidence 3445566777777777777777764 243 3 46677788888888888888888887763 343 556777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
+..++...|++++|...++++++..|.++........
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 7888888899999999999998888866655444433
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.23 E-value=3.3e-06 Score=68.17 Aligned_cols=112 Identities=8% Similarity=-0.088 Sum_probs=70.4
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCC--CcC----HHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGI--EVS----PTVWG 511 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~~ 511 (624)
.+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+..- .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34445555566666666666666665531 12455666667777777777777777776655210 111 55667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 512 ALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 512 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
.+..++...|++++|...++++.+..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 777777788888888888888888777 5666665555443
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.22 E-value=7.7e-05 Score=70.48 Aligned_cols=181 Identities=11% Similarity=0.053 Sum_probs=109.9
Q ss_pred CHHHHHHHhccCC---CCCchhHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHH------
Q 006955 385 NIQSALLEFSSVP---IHDIISWNSIICGLAYH-G-YAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVD------ 453 (624)
Q Consensus 385 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~------ 453 (624)
.+++++..++.+. +.+..+|+.-...+... + ++++++++++++.+.. +-|...|+.-...+.+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhh
Confidence 3566666665554 33445666655555554 5 6777777777777632 223445554444444444444
Q ss_pred --HHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCC-------hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006955 454 --QGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGL-------IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNI 523 (624)
Q Consensus 454 --~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 523 (624)
++.+.++++.+. .| |...|+....++.+.++ ++++++.+++++... +-|...|+-+-..+...|..
T Consensus 183 ~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 183 WGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 777777777764 34 67777777777766665 677888887777632 33566776666666555443
Q ss_pred --------------------HHHHHHHHHHHccC------CCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 524 --------------------KVGEIAGERVMELE------PNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 524 --------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.........+.... +..+..+..|+.+|...|+.++|.++++.+.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22223333332222 345667889999999999999999999988654
No 178
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=6.6e-06 Score=76.87 Aligned_cols=113 Identities=8% Similarity=-0.132 Sum_probs=89.9
Q ss_pred ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHH
Q 006955 435 DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGA 512 (624)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ 512 (624)
+...+..+...+...|++++|...++++.+. .| +...|..+..+|.+.|++++|++.+++..+. .| +...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 3456777778888899999999999988874 45 6778888899999999999999999988873 44 5778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
+..++...|++++|...+++++++.|.++..+...++...
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 8888899999999999999999988877655544444443
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.20 E-value=1.1e-06 Score=69.58 Aligned_cols=96 Identities=9% Similarity=-0.018 Sum_probs=71.8
Q ss_pred ccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (624)
..|++++|+..|+++.+...-.| +...+..+..+|...|++++|++.+++..+.. +-++..+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35777888888888776310024 56778888899999999999999999988742 33577888888889999999999
Q ss_pred HHHHHHHHccCCCCCchH
Q 006955 527 EIAGERVMELEPNNSGVY 544 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~ 544 (624)
...++++++..|.++...
T Consensus 81 ~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHH
Confidence 999999999998776553
No 180
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.15 E-value=0.00025 Score=67.00 Aligned_cols=229 Identities=10% Similarity=0.066 Sum_probs=149.4
Q ss_pred CCCchHHHHHHHHhHHcCCCCCH-HHHHHHHHHHcCCC-CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh-C-CHHH
Q 006955 313 NDLGEEGLKFFVQMKESGPSPDN-ATFTSVLTICSDLP-TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC-G-NIQS 388 (624)
Q Consensus 313 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 388 (624)
.+..++|++++.++... .|+. ..++.--..+...+ .++++..++..+..... -+..+++.-.-++.+. + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHH
Confidence 34445677777777765 4443 33444444444455 47777777777776543 3334444444444444 5 7788
Q ss_pred HHHHhccCC---CCCchhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCChhhHHHHHHHhcccCh------
Q 006955 389 ALLEFSSVP---IHDIISWNSIICGLAYHGYAE--------KALELFERMRLTDFKPDDITFVGVLSACSYAGL------ 451 (624)
Q Consensus 389 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------ 451 (624)
++++++++. +.|..+|+.-...+...+.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 888888877 345567776655555555555 8999999999853 3355677777766666665
Q ss_pred -HHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCCh--------------------HHHHHHHHHcccCC-----CC
Q 006955 452 -VDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLI--------------------DEAMNLLNEIRADG-----IE 504 (624)
Q Consensus 452 -~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~g-----~~ 504 (624)
++++++.++++... .| |...|+.+-..+.+.|+. ....+...++...+ -.
T Consensus 223 ~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 223 SLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 78889998888873 46 788888877777776653 44455555555432 13
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHH-ccCCCCCchHHHHH
Q 006955 505 VSPTVWGALLGACRIHNNIKVGEIAGERVM-ELEPNNSGVYLILT 548 (624)
Q Consensus 505 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 548 (624)
+++..+..|+..|...|+.++|.++++.+. +.+|-....+...+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 578899999999999999999999999987 57785444444443
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.15 E-value=2.9e-06 Score=71.79 Aligned_cols=78 Identities=13% Similarity=0.000 Sum_probs=65.2
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC-chHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS-GVYLILT 548 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 548 (624)
+...|..+..+|.+.|++++|+..+++.++. .| ++..|..+..++...|++++|...++++++++|.++ .+...+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4567888999999999999999999998874 45 577899999999999999999999999999999877 4444444
Q ss_pred HH
Q 006955 549 EM 550 (624)
Q Consensus 549 ~~ 550 (624)
.+
T Consensus 140 ~~ 141 (162)
T 3rkv_A 140 IV 141 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.13 E-value=8.2e-06 Score=79.39 Aligned_cols=136 Identities=9% Similarity=-0.045 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDL 481 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 481 (624)
.|..+...+.+.|++++|+..|++..+. .|... .....+...+ ..| +...|..+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~-----------------~~~~~~~~~~---~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR-----------------AAAEDADGAK---LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH-----------------HHSCHHHHGG---GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc-----------------cccChHHHHH---HHHHHHHHHHHHHHH
Confidence 4555666667777777777777766541 11000 0000111111 234 56788899999
Q ss_pred hhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDA 560 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 560 (624)
|.+.|++++|++.++++++. .| ++..+..+..++...|++++|...+++++++.|.++..+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874 45 5788999999999999999999999999999999999999999999998888877
Q ss_pred HH
Q 006955 561 KR 562 (624)
Q Consensus 561 ~~ 562 (624)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.12 E-value=0.00029 Score=66.20 Aligned_cols=180 Identities=13% Similarity=0.088 Sum_probs=117.4
Q ss_pred HHHHHHHhccCC---CCCchhHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCh-HHHHHHHH
Q 006955 386 IQSALLEFSSVP---IHDIISWNSIICGLAYHG--YAEKALELFERMRLTDFKPDDITFVGVLSACSYAGL-VDQGRYYF 459 (624)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~ 459 (624)
+++++.+++.+. +.+..+|+.-...+...+ .+++++..++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445555555554 446667777666666666 3778888888888742 3344566655555556666 57888888
Q ss_pred HHhhhhcCCCC-CcchHHHHHHHhhcc--------------CChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhc---
Q 006955 460 DCMKNKYFLQP-RSAHYTCVVDLLGRF--------------GLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIH--- 520 (624)
Q Consensus 460 ~~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~--- 520 (624)
+++.+. .| |...|+....++... +.++++++.+.+... ..| |...|+-+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCc
Confidence 887774 35 666776655555443 457788888888776 344 566776555554433
Q ss_pred --------CChHHHHHHHHHHHccCCCCCchHHHHHHHH---HhcCChHHHHHHHHHHHHCC
Q 006955 521 --------NNIKVGEIAGERVMELEPNNSGVYLILTEMY---LSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 521 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~ 571 (624)
+.++++++.+++++++.|++...+..++... ...|..++....+.++.+..
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4578888899999999997755544443322 24677788888888887654
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.11 E-value=4.4e-06 Score=68.60 Aligned_cols=76 Identities=12% Similarity=0.000 Sum_probs=63.1
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccC-----CCCcC-HHHH----HHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRAD-----GIEVS-PTVW----GALLGACRIHNNIKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 542 (624)
..|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++++++.|.+..
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 37888888999999999999999888872 01675 5578 88899999999999999999999999998877
Q ss_pred hHHHHH
Q 006955 543 VYLILT 548 (624)
Q Consensus 543 ~~~~l~ 548 (624)
....+.
T Consensus 138 ~~~~~~ 143 (159)
T 2hr2_A 138 ETPGKE 143 (159)
T ss_dssp CCTTHH
T ss_pred HHHHHH
Confidence 655543
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=2.7e-05 Score=78.01 Aligned_cols=167 Identities=8% Similarity=-0.110 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCh----hhHHHHHHHhcccChHHHHHHHHHHhhhhc---CCCC-Ccc
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLT-DFKPDD----ITFVGVLSACSYAGLVDQGRYYFDCMKNKY---FLQP-RSA 473 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~ 473 (624)
++..+...|...|++++|.+.+.++.+. +..++. .+.+.+...+...|+.+.+..+++...... +..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3667888899999999999999887652 111222 123333445667789999999888766431 1112 245
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC---CCC----C
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELE---PNN----S 541 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~----~ 541 (624)
++..++..|...|++++|..++++.... +-.| ...++..++..|...|++++|...++++.... |.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6778999999999999999999876432 1122 24577888899999999999999999998743 222 2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
..+..++..+...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3467778888899999999988877654
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.04 E-value=0.00021 Score=67.16 Aligned_cols=193 Identities=8% Similarity=-0.032 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhC--CHHHHHHHhccCC---CCCchhHHHHHHHHHHcCC-hHHHHHHHH
Q 006955 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCG--NIQSALLEFSSVP---IHDIISWNSIICGLAYHGY-AEKALELFE 425 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~a~~~~~ 425 (624)
+.+..++..+.... |-+..+++.-.-++.+.| .+++++.+++++. +.|..+|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 44555555555543 223334443334444445 4677777777776 4567788877777777887 589999999
Q ss_pred HHHHCCCCCChhhHHHHHHHhccc--------------ChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhcc-----
Q 006955 426 RMRLTDFKPDDITFVGVLSACSYA--------------GLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRF----- 485 (624)
Q Consensus 426 ~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----- 485 (624)
++.+.. +-|...|+.....+... +.++++.+.++.... ..| |...|+.+-..+.+.
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccc
Confidence 998853 23445555444333322 568889999998887 457 778887666666555
Q ss_pred ------CChHHHHHHHHHcccCCCCcCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 486 ------GLIDEAMNLLNEIRADGIEVSP-TVWGALLGA---CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 486 ------g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
+.++++++.++++.+ +.||. .++.+++.. ....|..++....+.++.+++|....-|..+...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 457899999999987 56764 233332221 22467888999999999999997766676665543
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=5.8e-06 Score=64.55 Aligned_cols=94 Identities=11% Similarity=-0.030 Sum_probs=77.8
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------CchH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN------SGVY 544 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 544 (624)
+...+..+...+...|++++|++.+++..+.. +.++..+..+..++...|++++|...+++++++.|.+ +..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45567778888999999999999999988742 3367888889999999999999999999999999987 6778
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 006955 545 LILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~ 565 (624)
..++.++...|++++|.+.++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 888888888887777766554
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=1.6e-05 Score=80.29 Aligned_cols=115 Identities=9% Similarity=-0.018 Sum_probs=53.1
Q ss_pred HHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChH
Q 006955 377 ITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLV 452 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 452 (624)
...+.+.|++++|++.+++.. +.+..+|..+..+|...|++++|+..+++..+. .|+ ...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 334455555555555555443 223445555555555555555555555555552 232 23444444555555555
Q ss_pred HHHHHHHHHhhhhcCCCC-CcchHHHHHHH--hhccCChHHHHHHHH
Q 006955 453 DQGRYYFDCMKNKYFLQP-RSAHYTCVVDL--LGRFGLIDEAMNLLN 496 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 496 (624)
++|.+.++++.+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555555442 23 23333333333 444455555555554
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.01 E-value=1.6e-05 Score=62.60 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=60.7
Q ss_pred HHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 490 EAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.|++.+++..+.. +.++..+..+..++...|++++|...++++++..|.++..+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566677766532 335667777778888888888888888888888888888888888888888888888888887765
Q ss_pred C
Q 006955 570 N 570 (624)
Q Consensus 570 ~ 570 (624)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=3.5e-05 Score=74.87 Aligned_cols=97 Identities=6% Similarity=-0.023 Sum_probs=79.7
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccC--------------CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRAD--------------GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+..+...+.+.|++++|++.|++.++. ...| +..+|..+..++...|++++|+..+++++++.|.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 455566666777777777777666541 0223 4568888999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 540 NSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.++..++.+|...|++++|.+.+++..+..
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999987753
No 191
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.00 E-value=5.1e-07 Score=86.11 Aligned_cols=256 Identities=13% Similarity=0.157 Sum_probs=170.8
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCC--CCCchhHHHHHHHHHhC
Q 006955 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGME--VRDVVTWNSMISGYVCN 96 (624)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~ 96 (624)
..+.+|+.|.++..+.|.+.+|+..|=+. .|+..|..++.+..+.|.+++-.+.+...+ ..++.+=+.|+-+|++.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 129 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh
Confidence 35678888999998889888888765444 455568888899999999999999887666 45666778899999999
Q ss_pred CChhHHHHHhccCCC-CCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCC
Q 006955 97 GLIDEALRVFHGMPL-KDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKD 175 (624)
Q Consensus 97 g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 175 (624)
++..+- ++... ||..-...+..-|...|.++.|.-+|..+. .|.-|..++.+.|++..|.+.-++ ..+
T Consensus 130 ~rL~el----Eefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK--Ans 198 (624)
T 3lvg_A 130 NRLAEL----EEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK--ANS 198 (624)
T ss_dssp CSSSTT----TSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT--CCS
T ss_pred CcHHHH----HHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh--cCC
Confidence 887663 33332 777777888888888888888877776554 445556667777777777655432 347
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCC---CCcchHHHHHHHHHhcC
Q 006955 176 VQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE---TCEKTWNSIISVLIRNG 252 (624)
Q Consensus 176 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~ 252 (624)
+.||..+..+|...+++.-|--.--.+.- ...-...++..|-..|.+++-+.+++.... ...-.|+-|.-.|++-
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-
Confidence 78888888899988888766544333321 111123456667777888877777776653 2333566666566554
Q ss_pred ChHHHHHHHhhcC-----------CCCcchhhHHHHHHHhcCChHHHH
Q 006955 253 LVKEAHSYLEKYP-----------YSNIASWTNVIVGYFEMGEVGSAI 289 (624)
Q Consensus 253 ~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~ 289 (624)
..++..+.++..- ......|.-++-.|..-.++|.|.
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 3333333333222 123344666666676666666554
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.99 E-value=9.5e-05 Score=76.10 Aligned_cols=168 Identities=10% Similarity=-0.060 Sum_probs=132.3
Q ss_pred HHHHHHHhccCC---CCCchhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccC-
Q 006955 386 IQSALLEFSSVP---IHDIISWNSIICGLAYHGY----------AEKALELFERMRLTDFKP-DDITFVGVLSACSYAG- 450 (624)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g- 450 (624)
.++|++.++++. +.+..+|+.-..++...++ ++++++.++++.+. .| +..+|..-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 355666666665 3344567766666666666 89999999999884 45 4467877777777888
Q ss_pred -hHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccC-ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc-------
Q 006955 451 -LVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFG-LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH------- 520 (624)
Q Consensus 451 -~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~------- 520 (624)
+++++.+.++++.+. .| +...|+.-..++.+.| .++++++.++++++.. +-+...|+....++...
T Consensus 123 ~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 779999999999984 46 7888888888888888 8999999999998843 33677887777766542
Q ss_pred -------CChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHH
Q 006955 521 -------NNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRED 559 (624)
Q Consensus 521 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 559 (624)
+.++++.+.+.+++..+|.|..+|..+...+...|++++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.99 E-value=9.5e-06 Score=78.03 Aligned_cols=150 Identities=5% Similarity=-0.051 Sum_probs=80.9
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCh
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGL 451 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 451 (624)
.+..+...+.+.|++++|+..|++....++... .+...++..++...+. ...+..+..++.+.|+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcCC
Confidence 356678888999999999999988662221111 1222333333332221 1367778888899999
Q ss_pred HHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHH-HhcCChHHHHH
Q 006955 452 VDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGAC-RIHNNIKVGEI 528 (624)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~-~~~g~~~~a~~ 528 (624)
+++|+..++++.+. .| +...|..+..+|...|++++|...|+++.+ +.|+ ...+..+.... ...+..+.+..
T Consensus 246 ~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 246 YDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp CHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998874 46 678888999999999999999999999887 4564 44555555552 45677888889
Q ss_pred HHHHHHccCCCCC
Q 006955 529 AGERVMELEPNNS 541 (624)
Q Consensus 529 ~~~~~~~~~p~~~ 541 (624)
.|.++++..|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999888654
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.97 E-value=3.4e-05 Score=58.81 Aligned_cols=65 Identities=28% Similarity=0.301 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 506 SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
++..+..+..++...|++++|+..++++++.+|.++..|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888888888999999999999999999988889999999999999999999988887654
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.96 E-value=2.6e-05 Score=58.06 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=68.8
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
+...+..+...+...|++++|++.+++..+.. +.++..+..+..++...|++++|...++++++..|.++..+..++.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35567778888888999999999998887632 33577888888888999999999999999999999888888888888
Q ss_pred HHhcC
Q 006955 551 YLSCG 555 (624)
Q Consensus 551 ~~~~g 555 (624)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 77654
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.96 E-value=3.4e-05 Score=77.63 Aligned_cols=99 Identities=14% Similarity=-0.020 Sum_probs=86.0
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----------------PTVWGALLGACRIHNNIKVGEIAGERVM 534 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 534 (624)
....+..+...|.+.|++++|+..|+++++ +.|+ ...|..+..++...|++++|+..+++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 355667777888888888888888888776 3333 4788899999999999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 535 ELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 535 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+++|.++..|..++.+|...|++++|...|++..+..
T Consensus 345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999987763
No 197
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.94 E-value=5.5e-06 Score=79.22 Aligned_cols=411 Identities=10% Similarity=0.085 Sum_probs=244.1
Q ss_pred CCCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHcCCChhhHHHHHhcCC
Q 006955 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPE--RDMFTYNTVIAGLMQSDNVQGAKEVFDGME 79 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 79 (624)
+.|++.+|++.|= ...|+..|..++.+..+.|.+++-++.+.-..+ .++.+-+.|+-+|++.++..+-++++ .
T Consensus 66 ~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl---~ 140 (624)
T 3lvg_A 66 QKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---N 140 (624)
T ss_dssp TSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT---S
T ss_pred ccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH---c
Confidence 3455566665552 236888899999999999999999999988873 67788889999999999988766543 3
Q ss_pred CCCchhHHHHHHHHHhCCChhHHHHHhccCCC------------------------CCcccHHHHHHHHHcCCChHHHHH
Q 006955 80 VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL------------------------KDVVSWNLVIGALVNCQRMDLAES 135 (624)
Q Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~~~~l~~~~~~~~~~~~a~~ 135 (624)
.||..-...++.-+...|.++.|.-+|..+.. .++.||-.+-.+|...+++.-|.-
T Consensus 141 ~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 141 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHH
Confidence 57777778899999999999999888877641 466678777778887777766654
Q ss_pred HHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCC---CCChhHHHHHHHHHHHcCChhHHHHHHHHcccC-------
Q 006955 136 YFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMP---AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR------- 205 (624)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 205 (624)
.--.++- .+.-...++..|-..|.+++.+.+++.-. +...-.|+-|.-.|++- ++++..+.++..-.+
T Consensus 221 cGLniIv-hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvi 298 (624)
T 3lvg_A 221 CGLHIVV-HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVL 298 (624)
T ss_dssp HHHHHHC-CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTH
T ss_pred hcchhcc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHH
Confidence 4333321 11122334556667777777666666554 23556777777777765 566666666554432
Q ss_pred ----CcccHHHHHHHHHcCCCHHHHHHHhhhC-------------CC--CCcchHHHHHHHHHhcCChHHHHHHHhhcCC
Q 006955 206 ----DLTSWKQLINGLVNSRRIDAAISYFKQM-------------PE--TCEKTWNSIISVLIRNGLVKEAHSYLEKYPY 266 (624)
Q Consensus 206 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------------~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (624)
....|..++-.|.+-.+++.|....-.- .. +|...|...+..|..
T Consensus 299 racE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~---------------- 362 (624)
T 3lvg_A 299 RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE---------------- 362 (624)
T ss_dssp HHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTT----------------
T ss_pred HHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHH----------------
Confidence 3345777777777777777665332111 00 233344444444432
Q ss_pred CCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhc---CCCchHHHHHHHHhHHcCCCCCHHHHHHHHH
Q 006955 267 SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGE---NDLGEEGLKFFVQMKESGPSPDNATFTSVLT 343 (624)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 343 (624)
..+...+-|+......=+...+.++|.+... -.|+.-|.. ..+...+-+.+.++.-. .-|-.++..-+.
T Consensus 363 e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~------LpLIkpYL~~Vq~~N~~aVNeAln~L~IE--EEDy~~LR~SId 434 (624)
T 3lvg_A 363 FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ------LPLVKPYLRSVQNHNNKSVNESLNNLFIT--EEDYQALRTSID 434 (624)
T ss_dssp SCCTTSHHHHHHHCTTCCSTTTHHHHHTTTC------GGGGTGGGTSCCCSCCHHHHHHHHHHHHH--TTCCHHHHHTTS
T ss_pred hChHHHHHHHHhccccCChHHHHHHHHhcCC------chhhHHHHHHHHHhhHHHHHHHHHHHHhh--hhhHHHHHHHHH
Confidence 2333444555554444444555555544321 112222211 11222222333332211 122233333333
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHH
Q 006955 344 ICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
.|-+-..+..|.++-. .+-...-..-...|.+.++|.+++++.++=. .|.-.|...+..|+.+-|+++
T Consensus 435 ~ydNFD~i~LA~rLEk-------HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDk-----lykDAietAa~S~~~elaeeL 502 (624)
T 3lvg_A 435 AYDNFDNISLAQRLEK-------HELIEFRRIAAYLFKGNNRWKQSVELCKKDS-----LYKDAMQYASESKDTELAEEL 502 (624)
T ss_dssp SCCCSCTTHHHHHHHT-------CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHH
T ss_pred HhccccHHHHHHHHhh-------CchHHHHHHHHHHHHhcccHHHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444321 0111112234556778888888877665433 122234455667888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHH
Q 006955 424 FERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYY 458 (624)
Q Consensus 424 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 458 (624)
++-..+.| +...|...+-.|...=++|.+.++
T Consensus 503 L~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 503 LQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 88888755 556788888888887777766654
No 198
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.92 E-value=3.1e-05 Score=65.05 Aligned_cols=136 Identities=12% Similarity=0.021 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC----Ccc
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFK-PDD----ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP----RSA 473 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 473 (624)
++..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|...+++..+...-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4666777788888888888888877653111 111 3666777788888999999988888765321111 145
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|...+++++++.+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 6778888999999999999999886642 2112 244677788889999999999999999987554
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.87 E-value=8.9e-06 Score=66.59 Aligned_cols=88 Identities=13% Similarity=0.108 Sum_probs=69.3
Q ss_pred hccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNN----------IKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
.+.+.+++|++.+++..+.. +.++..|..+..++...|+ +++|+..|+++++++|+++.+|..++.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34556777777777776632 3356667666666666554 569999999999999999999999999999
Q ss_pred hcC-----------ChHHHHHHHHHHHHCC
Q 006955 553 SCG-----------RREDAKRIFAQMKENG 571 (624)
Q Consensus 553 ~~g-----------~~~~A~~~~~~m~~~~ 571 (624)
..| ++++|.+.|++..+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 875 8999999999998764
No 200
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00013 Score=73.01 Aligned_cols=162 Identities=10% Similarity=0.010 Sum_probs=119.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCc
Q 006955 409 CGLAYHGYAEKALELFERMRLTDFKPDD----------------ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRS 472 (624)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 472 (624)
..+...|++++|++.|.++.+....... ..+..+...|...|++++|.+++..+....+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4466778888999988888774222111 136778889999999999999999887643222221
Q ss_pred ----chHHHHHHHhhccCChHHHHHHHHHccc----CCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccC------
Q 006955 473 ----AHYTCVVDLLGRFGLIDEAMNLLNEIRA----DGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELE------ 537 (624)
Q Consensus 473 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 537 (624)
.+.+.+...+...|+.+.|.+++++... .+..+. ..++..|...+...|++++|...++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2344555666778999999999887643 222333 5578889999999999999999999988632
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 538 PNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 538 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
|....++..++.+|...|++++|..++++.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 222457899999999999999999999987653
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.80 E-value=0.00011 Score=54.82 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=61.4
Q ss_pred CcCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 006955 504 EVSPTVWGALLGACRIHNN---IKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVK 573 (624)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 573 (624)
++++..+..+..++...++ .++|..+++++++.+|.++.....++..+...|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4577888888888755444 799999999999999999999999999999999999999999999887643
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=8.8e-05 Score=74.42 Aligned_cols=126 Identities=10% Similarity=-0.006 Sum_probs=95.8
Q ss_pred hcccChHHHHHHHHHHhhhhc--CCCC----CcchHHHHHHHhhccCChHHHHHHHHHcccC-----C-CCcC-HHHHHH
Q 006955 446 CSYAGLVDQGRYYFDCMKNKY--FLQP----RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-----G-IEVS-PTVWGA 512 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p~-~~~~~~ 512 (624)
+...|++++|..++++..+.. -+.| ...+++.|..+|...|++++|..++++.++. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456788888887777765431 1223 2456888999999999999999988876532 1 1232 447888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHc-----cCCCCCch---HHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 513 LLGACRIHNNIKVGEIAGERVME-----LEPNNSGV---YLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
|...|...|++++|+.+++++++ +.|++|.+ ...|..++...|++++|..++.+++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999987 56766655 5678888889999999999999998754
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.75 E-value=9e-05 Score=74.33 Aligned_cols=120 Identities=13% Similarity=0.030 Sum_probs=93.2
Q ss_pred HhhccCChHHHHHHHHHcccC---CCCc---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCCc---hHH
Q 006955 481 LLGRFGLIDEAMNLLNEIRAD---GIEV---S-PTVWGALLGACRIHNNIKVGEIAGERVME-----LEPNNSG---VYL 545 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~---g~~p---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~ 545 (624)
.+...|++++|+.++++.++. -+.| + ..+++.|..+|...|++++|+.+++++++ +.|++|. .+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455789999999998876542 1222 2 45888999999999999999999999987 4565554 488
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHHHHHHhh
Q 006955 546 ILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIEREI 618 (624)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (624)
.|+.+|..+|++++|..++++..+.-. . .-+..||.+.++...+.....+++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-V-----------------THGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-H-----------------HhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876421 1 124679999999988888877666543
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.73 E-value=2.2e-05 Score=64.25 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=66.9
Q ss_pred ccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCC----------hHHHHHHHHHcccCCCCc-CHHHHHHHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGL----------IDEAMNLLNEIRADGIEV-SPTVWGALLG 515 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 515 (624)
+.+.+++|.+.++...+. .| +...|..+..++...++ +++|+..|++.++ +.| +...|..+..
T Consensus 14 r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 345667777777777763 45 66777777777776655 4588888888887 556 4668888888
Q ss_pred HHHhc-----------CChHHHHHHHHHHHccCCCCC
Q 006955 516 ACRIH-----------NNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 516 ~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 541 (624)
+|... |++++|+..|+++++++|.++
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 88766 589999999999999999654
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.71 E-value=0.00014 Score=71.80 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=92.7
Q ss_pred HHHhhccCChHHHHHHHHHcccC---CCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCCc---h
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRAD---GIEVS----PTVWGALLGACRIHNNIKVGEIAGERVME-----LEPNNSG---V 543 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~ 543 (624)
+..+...|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.+++++++ +.|.+|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455778999999999887643 12332 34788899999999999999999999987 4455554 4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 006955 544 YLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIE 615 (624)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (624)
+..|+.+|..+|++++|..++++..+.-. . .-+..||...+++..|.+...++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999876421 1 124679999999999988887765
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.66 E-value=0.001 Score=54.06 Aligned_cols=112 Identities=11% Similarity=-0.020 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCChHH
Q 006955 450 GLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI----HNNIKV 525 (624)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~ 525 (624)
++.++|.++|++..+.. ++... |...|...+..++|+++|++..+.| ++..+..|...|.. .+|+++
T Consensus 9 ~d~~~A~~~~~~aa~~g----~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN----EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT----CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC----CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 45666777777666532 22222 6666666667777777777776543 45566666666665 677788
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 006955 526 GEIAGERVMELEPNNSGVYLILTEMYLS----CGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 526 a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 572 (624)
|...++++.+. .++..+..|+.+|.. .+++++|.+++++..+.|.
T Consensus 80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888877765 366777788888877 7788888888887777763
No 207
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00017 Score=55.98 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=61.8
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 505 VSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 505 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++...+..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3566788888999999999999999999999999999999999999999999999999999987764
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.62 E-value=0.00014 Score=57.10 Aligned_cols=82 Identities=10% Similarity=-0.050 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006955 454 QGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGER 532 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 532 (624)
.+...++++.+ ..| +...+..+...|...|++++|++.+++..+.. +.+...|..+..++...|++++|...+++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35566666665 335 67778888888888899999999988887632 33567888888888889999999999999
Q ss_pred HHccCCC
Q 006955 533 VMELEPN 539 (624)
Q Consensus 533 ~~~~~p~ 539 (624)
+++..|.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 8887774
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.61 E-value=0.0001 Score=72.56 Aligned_cols=107 Identities=10% Similarity=0.185 Sum_probs=81.4
Q ss_pred ccCChHHHHHHHHHcccC---CCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCCc---hHHHHH
Q 006955 484 RFGLIDEAMNLLNEIRAD---GIEVS----PTVWGALLGACRIHNNIKVGEIAGERVME-----LEPNNSG---VYLILT 548 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~ 548 (624)
..|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.+++++++ +.|++|. .+..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888775431 12232 35788899999999999999999999987 4555554 489999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHH
Q 006955 549 EMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLN 608 (624)
Q Consensus 549 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (624)
.+|..+|++++|..++++..+.-. . .-+..||.+.+++..|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIME-V-----------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHH-H-----------------HcCCCChHHHHHHHHHh
Confidence 999999999999999999876421 1 12467999998887665
No 210
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.51 E-value=0.001 Score=68.47 Aligned_cols=152 Identities=11% Similarity=0.001 Sum_probs=123.1
Q ss_pred HcC-ChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccCh----------HHHHHHHHHHhhhhcCCCC-CcchHHHHH
Q 006955 413 YHG-YAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGL----------VDQGRYYFDCMKNKYFLQP-RSAHYTCVV 479 (624)
Q Consensus 413 ~~~-~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 479 (624)
..| ..++|++.++++.. +.|+. ..|+.--.++...|+ ++++.+.++.+.+. .| +..+|..-.
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~ 114 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRC 114 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 444 45788999999998 56765 456555455555555 89999999999984 46 788888888
Q ss_pred HHhhccC--ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhc--
Q 006955 480 DLLGRFG--LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN-NIKVGEIAGERVMELEPNNSGVYLILTEMYLSC-- 554 (624)
Q Consensus 480 ~~~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-- 554 (624)
.++.+.| +++++++.++++.+.. +-+...|+.-..+....| .++++.+.++++++.+|.|..+|...+.++...
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcc
Confidence 8888999 7799999999999843 336778888888888888 899999999999999999999999999998874
Q ss_pred ------------CChHHHHHHHHHHHHC
Q 006955 555 ------------GRREDAKRIFAQMKEN 570 (624)
Q Consensus 555 ------------g~~~~A~~~~~~m~~~ 570 (624)
++++++.+.+++....
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHHhh
Confidence 5578898888887753
No 211
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.48 E-value=0.00035 Score=51.71 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 506 SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+...+..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356788888899999999999999999999999999999999999999999999999999987753
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.33 E-value=0.0003 Score=53.42 Aligned_cols=66 Identities=8% Similarity=-0.060 Sum_probs=50.5
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
++..+..+..+|...|++++|++.|++..+. .| ++..|..+..++...|++++|...+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5667777888888888888888888887763 34 466777788888888888888888888887655
No 213
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.30 E-value=0.11 Score=53.43 Aligned_cols=116 Identities=10% Similarity=-0.068 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHHCC-CCCChh--hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHH
Q 006955 416 YAEKALELFERMRLTD-FKPDDI--TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAM 492 (624)
Q Consensus 416 ~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 492 (624)
+.+.|...+....+.+ +.+... ....+.......+...++...+...... .++.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777765432 222111 2223333444445344445555543321 133333344444445667777777
Q ss_pred HHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 493 NLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 493 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
+.|+.|.... ...+...--+..+....|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777776521 11233333444555667777777777777754
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.0048 Score=49.94 Aligned_cols=112 Identities=9% Similarity=-0.109 Sum_probs=91.6
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChHH
Q 006955 415 GYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLIDE 490 (624)
Q Consensus 415 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 490 (624)
+++++|..+|++..+.| .|+.. +...|...+.+++|.++|++..+. -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999999887 33333 667777888888999999998874 367778888888887 889999
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCC
Q 006955 491 AMNLLNEIRADGIEVSPTVWGALLGACRI----HNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 538 (624)
|.++|++..+.| ++..+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998754 56677778888877 8999999999999988753
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.30 E-value=0.0012 Score=53.45 Aligned_cols=90 Identities=14% Similarity=-0.039 Sum_probs=61.2
Q ss_pred cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccC---ChHHHHHHHHHcccCCCCc--CHHHHHHHHHHHHhcCCh
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFG---LIDEAMNLLNEIRADGIEV--SPTVWGALLGACRIHNNI 523 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~ 523 (624)
.+....+++.+.+..... .++..+...+.+++++.+ +.++++.++++..+.. .| ....+-.|.-+|.+.|++
T Consensus 11 ~~~l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCH
Confidence 345666666666665532 256777777777888777 5668888888877643 24 244555666677788888
Q ss_pred HHHHHHHHHHHccCCCCC
Q 006955 524 KVGEIAGERVMELEPNNS 541 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~ 541 (624)
++|.++++++++.+|.|.
T Consensus 88 ~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhcCCCCH
Confidence 888888888888888553
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.20 E-value=0.0076 Score=56.85 Aligned_cols=139 Identities=15% Similarity=-0.023 Sum_probs=81.6
Q ss_pred CCCchhHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcc--------cChHHHHHHHHHHhh
Q 006955 398 IHDIISWNSIICGLA--YHG---YAEKALELFERMRLTDFKPDD-ITFVGVLSACSY--------AGLVDQGRYYFDCMK 463 (624)
Q Consensus 398 ~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~--------~g~~~~a~~~~~~~~ 463 (624)
+.+...|...+.+.. ..+ ...+|..+|++..+ ..|+. ..+..+..++.. ..........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 335566666665532 222 34678888888887 56764 333333333211 001111112222211
Q ss_pred hhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 464 NKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 464 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
.....+.++.+|..+...+...|++++|...+++++.. .|+...|..+...+...|++++|...+++++.++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 11111236667777766666678888888888888774 4776677667777778888888888888888888844
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.19 E-value=0.0014 Score=49.33 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=60.0
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCc-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEV-SPT-VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
....+.+.|++++|++.++++.+. .| ++. .+..+..++...|++++|...++++++..|.++..+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 455677889999999999988773 44 566 78888888889999999999999999999988776632 4
Q ss_pred ChHHHHHHHHH
Q 006955 556 RREDAKRIFAQ 566 (624)
Q Consensus 556 ~~~~A~~~~~~ 566 (624)
.+.++...+++
T Consensus 76 ~~~~a~~~~~~ 86 (99)
T 2kc7_A 76 MVMDILNFYNK 86 (99)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.09 E-value=0.0033 Score=59.31 Aligned_cols=136 Identities=9% Similarity=0.025 Sum_probs=95.1
Q ss_pred CCCChhhHHHHHHHhcc-----cChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhc---cC-----ChHHHHHHHHH
Q 006955 432 FKPDDITFVGVLSACSY-----AGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGR---FG-----LIDEAMNLLNE 497 (624)
Q Consensus 432 ~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-----~~~~A~~~~~~ 497 (624)
.+.+...|..++.+... .....+|+.+|+++.+ +.|+ ...|..+..+|.. .+ ........++.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 45566788877765432 2446889999999998 4674 4555555444431 11 11111111222
Q ss_pred cccC-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 498 IRAD-GIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 498 ~~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.... ..+.++.++..+...+...|++++|...+++++.++| +...|..+++++...|++++|.+.+++.....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1111 1255788888888888888999999999999999997 67778899999999999999999999887764
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.05 E-value=0.0014 Score=49.43 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=54.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCc-hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNNSG-VYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
....+...|++++|...++++++..|.++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999998764
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.99 E-value=0.0029 Score=57.07 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHcccCCCCcC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHccCCCC-CchHHHHHHHHHhc-CC
Q 006955 487 LIDEAMNLLNEIRADGIEVS---PTVWGALLGACRI-----HNNIKVGEIAGERVMELEPNN-SGVYLILTEMYLSC-GR 556 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~ 556 (624)
....|..++++.++ +.|+ ...|..|...|.. -|+.++|.++|+++++++|+. ..++...++.++.. |+
T Consensus 178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 35678888888877 6676 5578888888877 499999999999999999974 99999999999885 99
Q ss_pred hHHHHHHHHHHHHCCCccCCc
Q 006955 557 REDAKRIFAQMKENGVKKEPG 577 (624)
Q Consensus 557 ~~~A~~~~~~m~~~~~~~~~~ 577 (624)
.++|.+.+++........+|+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHHHHcCCCCCCCC
Confidence 999999999999987655565
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.81 E-value=0.0043 Score=47.25 Aligned_cols=78 Identities=9% Similarity=-0.014 Sum_probs=59.7
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccC------CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD------GIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
+..-+-.+...+...|++..|..+++++.+. +-.+.+.++..|..++.+.|+++.|...+++++++.|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344456777788888888888888776542 0124567888999999999999999999999999999887765
Q ss_pred HHHH
Q 006955 545 LILT 548 (624)
Q Consensus 545 ~~l~ 548 (624)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5553
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.64 E-value=0.017 Score=46.61 Aligned_cols=79 Identities=9% Similarity=-0.038 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhcccC---hHHHHHHHHHHhhhhcCCCC--CcchHHHHHHHhhccCChHHHHH
Q 006955 419 KALELFERMRLTDFKPDDITFVGVLSACSYAG---LVDQGRYYFDCMKNKYFLQP--RSAHYTCVVDLLGRFGLIDEAMN 493 (624)
Q Consensus 419 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 493 (624)
.+.+.|.+..+.|. ++..+.-.+..++.+.+ ++++++.+++.+.+.. .| +...+-.|.-+|.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34444444444332 33333334444444444 4445555555554431 12 12333334444455555555555
Q ss_pred HHHHccc
Q 006955 494 LLNEIRA 500 (624)
Q Consensus 494 ~~~~~~~ 500 (624)
.++.+++
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.62 E-value=0.17 Score=39.30 Aligned_cols=141 Identities=9% Similarity=0.075 Sum_probs=91.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHH
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDE 490 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 490 (624)
+.-.|..++..++..+..+ ..+..-+|.++--....-+-+-..++++.+-+-+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 3445666777777766654 223334444443333334444455555554443222 23455555
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 491 AMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
....+-.+- .+.......+.....+|.-++-.+++..++.-+|.+|..+..++.+|.+.|+..+|.+++.+..++
T Consensus 80 Vi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 80 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 555554433 233445566677778999999999999976666669999999999999999999999999999999
Q ss_pred CCc
Q 006955 571 GVK 573 (624)
Q Consensus 571 ~~~ 573 (624)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 975
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.41 E-value=0.022 Score=42.08 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=51.9
Q ss_pred CCcchHHHHHHHhhccCC---hHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 470 PRSAHYTCVVDLLGRFGL---IDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 470 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+++..+..+..++...++ .++|..++++.++ ..| ++..+..+...+...|++++|...|+++++..|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 366777777777754444 6888888888877 455 4667777778888888888888888888888886
No 225
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.34 E-value=0.016 Score=57.09 Aligned_cols=97 Identities=9% Similarity=-0.022 Sum_probs=70.8
Q ss_pred ccChHHHHHHHHHHhhhhc--CCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccC-----C-CCcC-HHHHHHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKY--FLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-----G-IEVS-PTVWGALL 514 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p~-~~~~~~l~ 514 (624)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467888888887765531 12232 456888999999999999999998886532 2 1233 44788899
Q ss_pred HHHHhcCChHHHHHHHHHHHc-----cCCCCCchH
Q 006955 515 GACRIHNNIKVGEIAGERVME-----LEPNNSGVY 544 (624)
Q Consensus 515 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 544 (624)
..|...|++++|+.+++++++ +.|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999987 557665443
No 226
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.28 E-value=0.27 Score=42.81 Aligned_cols=148 Identities=9% Similarity=0.013 Sum_probs=73.5
Q ss_pred HhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHH
Q 006955 44 FNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGA 123 (624)
Q Consensus 44 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 123 (624)
.+.+..++...-...+..+++.|..+....+.+.+..+|..+-...+.++...|+.+....+.+.+..+++..-...+.+
T Consensus 25 ~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~a 104 (211)
T 3ltm_A 25 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVA 104 (211)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33333455555555555555555544444444444455555555555555555554443333344444555555555555
Q ss_pred HHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCC
Q 006955 124 LVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGC 191 (624)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (624)
+.+.++.+....+.+.+..++...-...+.++.+.|+.+....+...+..++..+-...+.++.+.+.
T Consensus 105 L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 105 LGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 55555544443444433345555555555555555554433333333334455555555555555554
No 227
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.23 E-value=0.022 Score=56.11 Aligned_cols=102 Identities=9% Similarity=-0.112 Sum_probs=72.2
Q ss_pred HHhcccChHHHHHHHHHHhhhhc--CCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccC-----C-CCcC-HHHH
Q 006955 444 SACSYAGLVDQGRYYFDCMKNKY--FLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-----G-IEVS-PTVW 510 (624)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p~-~~~~ 510 (624)
..+.+.|++++|...+++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++++. | ..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33456677888888877766431 12232 456788888899999999999888876532 1 1232 4477
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCCchHH
Q 006955 511 GALLGACRIHNNIKVGEIAGERVME-----LEPNNSGVYL 545 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 545 (624)
+.|...|...|++++|+.+++++++ +.|++|.+-.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 8888899999999999999999987 5676665543
No 228
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.22 E-value=0.2 Score=43.65 Aligned_cols=157 Identities=11% Similarity=-0.012 Sum_probs=92.4
Q ss_pred CChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCCh
Q 006955 66 DNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDV 145 (624)
Q Consensus 66 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 145 (624)
++.+....+++.+..++..+-...+..+...|..+....+.+.+..++...-...+.++.+.++.+....+.+.+..+|+
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~ 95 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDG 95 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCH
Confidence 34444455555555667766666677777777655555555555556666666667777776665555555555555676
Q ss_pred hHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCC
Q 006955 146 ASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRR 222 (624)
Q Consensus 146 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (624)
..-...+.++.+.|+.+....+.+.+..++..+-...+.++.+.|+.+....+.+.+.+++..+-...+.++...+.
T Consensus 96 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 96 WVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 66667777777777655555555555566666666666666666665433334343334444444444555544444
No 229
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.20 E-value=0.26 Score=42.52 Aligned_cols=143 Identities=10% Similarity=0.002 Sum_probs=64.9
Q ss_pred CCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 006955 49 ERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQ 128 (624)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (624)
.++...-...+.++.+.++.+....+.+.+..++..+-...+.++...|..+....+.+.+..+++......+.++.+.+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 34444444444444444443333333333334444444444444444444433333333333455555555555555555
Q ss_pred ChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCC
Q 006955 129 RMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGC 191 (624)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (624)
+.+....+.+.+..++...-...+.++.+.|+.+....+...+..++..+-...+.++.+.|.
T Consensus 105 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 105 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 444333333333344555555555555555544333333333334455555555555555544
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.19 E-value=0.062 Score=58.35 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=74.5
Q ss_pred HHHHhcCChHHHHH-HHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhc
Q 006955 29 RGYFKNGFLDNAMC-LFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFH 107 (624)
Q Consensus 29 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 107 (624)
......++++.|.+ ++..+. +......++..+.+.|.++.|..+.+. . ..-.......|+++.|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHH
Confidence 34456778888877 553333 122236667777778888888776532 1 111334566788888888877
Q ss_pred cCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHH
Q 006955 108 GMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEAR 165 (624)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 165 (624)
.+ .+...|..+...+.+.++++.|++.|.++.. +..+...+...|+.+...
T Consensus 677 ~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 677 DE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp TC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHH
T ss_pred hh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHH
Confidence 66 4556788888888888888888887776642 333444444455554433
No 231
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.08 E-value=0.21 Score=43.08 Aligned_cols=176 Identities=11% Similarity=0.012 Sum_probs=121.3
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHH
Q 006955 10 QNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSM 89 (624)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 89 (624)
..+++.+..+|+.+-...+.++.+.|..+..-.+.+.+..++..+-...+.+++..++.+....+.+.+..++..+-...
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a 96 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSA 96 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 34555566688888888888888888766666666666678887777888888888877666666666668888888888
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhc
Q 006955 90 ISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFD 169 (624)
Q Consensus 90 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 169 (624)
+.++.+.|+.+....+.+.+..++...-...+.++.+.++......+.+.+..++..+-...+.++.+.|+.+ +...+.
T Consensus 97 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~-~~~~L~ 175 (201)
T 3ltj_A 97 AVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGER-VRAAME 175 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHH-HHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchh-HHHHHH
Confidence 8888888887666666666656888777888888888887665555555555577777777788888777644 333333
Q ss_pred cCC-CCChhHHHHHHHHH
Q 006955 170 KMP-AKDVQAWNLMIAGY 186 (624)
Q Consensus 170 ~~~-~~~~~~~~~l~~~~ 186 (624)
.+. .++..+-...+.+.
T Consensus 176 ~~l~d~~~~vr~~A~~aL 193 (201)
T 3ltj_A 176 KLAETGTGFARKVAVNYL 193 (201)
T ss_dssp HHHHHCCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 322 34444433333333
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.95 E-value=0.12 Score=39.95 Aligned_cols=92 Identities=14% Similarity=-0.038 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHH---HHHHHHHcccCCCCc--CHHHHHHHHHHHHhcCChH
Q 006955 450 GLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDE---AMNLLNEIRADGIEV--SPTVWGALLGACRIHNNIK 524 (624)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~ 524 (624)
..+..+.+.+.+.... + .|+..+-..+.+++.+..+... ++.++++....+ .| .....-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3445555556555443 2 2677777778888888886666 899999988754 34 2335556667789999999
Q ss_pred HHHHHHHHHHccCCCCCchH
Q 006955 525 VGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 525 ~a~~~~~~~~~~~p~~~~~~ 544 (624)
+|.+.++.+++..|.|..+.
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999775543
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.95 E-value=0.15 Score=55.24 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=63.8
Q ss_pred HHHHHcCCChHHHHH-HHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHH
Q 006955 121 IGALVNCQRMDLAES-YFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLF 199 (624)
Q Consensus 121 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 199 (624)
.......++++.|.+ ++..+. +......++..+.+.|..+.|.++.+. .. .-.......|+++.|.++.
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~~---~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----QD---QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----HH---HHHHHHHHHTCHHHHHHHH
T ss_pred HhHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----cc---hheehhhhcCCHHHHHHHH
Confidence 344455677777776 543322 122336666677777777777776642 11 1133445667888887776
Q ss_pred HHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCC
Q 006955 200 QKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE 235 (624)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 235 (624)
+.+ .+...|..+...+.+.++++.|.+.|..+.+
T Consensus 676 ~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 676 TDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp TTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred Hhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 655 3445677777777777777777777777644
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.84 E-value=0.015 Score=52.44 Aligned_cols=83 Identities=17% Similarity=0.186 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhhhcCCCCC---cchHHHHHHHhhc-----cCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHh-c
Q 006955 452 VDQGRYYFDCMKNKYFLQPR---SAHYTCVVDLLGR-----FGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRI-H 520 (624)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~-~ 520 (624)
...|...++++.+ +.|+ ...|..+...|.. -|+.++|.+.|++.++ +.|+ ..++......++. .
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhc
Confidence 4556666666665 4554 4467777777776 3788888888887776 5563 5566666666655 4
Q ss_pred CChHHHHHHHHHHHccCCC
Q 006955 521 NNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~ 539 (624)
|+.+.+.+.+++++...|.
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 7788888888888776664
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.80 E-value=0.035 Score=42.05 Aligned_cols=66 Identities=12% Similarity=-0.015 Sum_probs=55.8
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-------CCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 505 VSPTVWGALLGACRIHNNIKVGEIAGERVMELE-------PNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 505 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.++...-.+...+...|++..|...++++++.. +..+.++..|+.+|.+.|++++|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345566778888999999999999999999843 234567999999999999999999999998765
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.74 E-value=0.062 Score=41.64 Aligned_cols=84 Identities=11% Similarity=-0.034 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHH---HHHHHHHHHccC-C-CCCchHHHHHHHHHhcCChHHH
Q 006955 486 GLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKV---GEIAGERVMELE-P-NNSGVYLILTEMYLSCGRREDA 560 (624)
Q Consensus 486 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A 560 (624)
.....+.+-+.+....| .|+..+--.+.+++.+..+... ++.+++.+.... | ..-...+.|+-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34455666666655544 4788888888888887776655 888888888876 4 3556789999999999999999
Q ss_pred HHHHHHHHHC
Q 006955 561 KRIFAQMKEN 570 (624)
Q Consensus 561 ~~~~~~m~~~ 570 (624)
.++++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999876
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.64 E-value=0.031 Score=44.42 Aligned_cols=101 Identities=11% Similarity=0.036 Sum_probs=54.1
Q ss_pred hhHHHHHHHhcccChH------HHHHHHHHHhhhhcCCCCCc-chHHHHHHHh------hccCChHHHHHHHHHcccCCC
Q 006955 437 ITFVGVLSACSYAGLV------DQGRYYFDCMKNKYFLQPRS-AHYTCVVDLL------GRFGLIDEAMNLLNEIRADGI 503 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~------~~~g~~~~A~~~~~~~~~~g~ 503 (624)
.+|-..+....+.|+. ++.+++|+++... ++|+. ..|...|... ...++.++|.++|+.+++.+-
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 4565556655555666 6666777766663 55532 1222222211 233566666666666644311
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 504 EVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
+ =..+|.....--.++|+...|.+++.+++.+.|.+
T Consensus 92 k-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 92 K-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp T-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred H-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 1 14455444444456666666666666666666643
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.87 Score=37.72 Aligned_cols=126 Identities=14% Similarity=0.125 Sum_probs=68.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHH
Q 006955 412 AYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEA 491 (624)
Q Consensus 412 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 491 (624)
...|+++.|.++.+++ .+...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence 4556666666666554 2455666666666666777777766665443 33444555556666665
Q ss_pred HHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 492 MNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 492 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
.++-+.....| -++.....+...|+++++.+++.+.-+.. .-+......|-.+.|.++.+++
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~--------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLP--------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH--------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChH--------HHHHHHHHcCcHHHHHHHHHHh
Confidence 55555444333 23444445556677777777665542211 1111122245566666666544
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.53 E-value=1 Score=37.30 Aligned_cols=129 Identities=14% Similarity=0.108 Sum_probs=85.6
Q ss_pred HHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHH
Q 006955 378 TMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRY 457 (624)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 457 (624)
+.....|+++.|.++.+.+ .+...|..+.......|+++-|++.|++... +..+.-.|...|+.+....
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455678888888777665 3567899999999999999999999888653 3344444556677766665
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 458 YFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERV 533 (624)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 533 (624)
+-+....+. -++.-...+.-.|++++++++|.+.-. -|... ......|-.+.|.++.+.+
T Consensus 82 la~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 554444321 234445556678999999999877652 23221 1223467778888887765
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.17 E-value=0.16 Score=40.44 Aligned_cols=102 Identities=14% Similarity=0.158 Sum_probs=63.0
Q ss_pred CCCchhHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCChh-hHHHHHHH------hcccChHHHHHHHHHHhhh
Q 006955 398 IHDIISWNSIICGLAYHGYA------EKALELFERMRLTDFKPDDI-TFVGVLSA------CSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 398 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~-~~~~ll~~------~~~~g~~~~a~~~~~~~~~ 464 (624)
+.|+.+|-..+...-..|++ ++..++|++.... ++|+.. .+...+.. +...+++++|+++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45667777777777666777 7777777777664 555532 22222221 2234667777777777765
Q ss_pred hcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCC
Q 006955 465 KYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG 502 (624)
Q Consensus 465 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (624)
.+ -.- ...|-.....-.+.|+...|.+++.+.+..+
T Consensus 89 ~h-KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NC-KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HC-TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred Hh-HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 32 112 5556666666677788888888887777654
No 241
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=94.09 E-value=3.1 Score=37.84 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=7.6
Q ss_pred CCcchhhHHHHHHHhcCC
Q 006955 267 SNIASWTNVIVGYFEMGE 284 (624)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~ 284 (624)
++..+-...+.+..+.|+
T Consensus 204 ~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 333344444444444443
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.48 E-value=0.26 Score=51.60 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=79.7
Q ss_pred HHHHHHhcccCh-HHHHHHHHHHhhhhcCCCCCcchH--HHHHHHhhccC-ChHHHHHHHHHcccC------CCCc-CH-
Q 006955 440 VGVLSACSYAGL-VDQGRYYFDCMKNKYFLQPRSAHY--TCVVDLLGRFG-LIDEAMNLLNEIRAD------GIEV-SP- 507 (624)
Q Consensus 440 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g-~~~~A~~~~~~~~~~------g~~p-~~- 507 (624)
..++..+...|+ .+.|..+++++.+. .|....+ ..++..+...+ +--+|++++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 344554555555 57788888877764 2432222 22333333332 233455555544321 0111 11
Q ss_pred ---------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 508 ---------TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 508 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
..+..-..-|...|+++.|..+.+++....|.+..+|..|+.+|...|+|+.|+-.++.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112222234678899999999999999999999999999999999999999999999877
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.65 E-value=1.9 Score=34.06 Aligned_cols=74 Identities=12% Similarity=-0.030 Sum_probs=53.5
Q ss_pred CCCcchHHHHHHHhhccCC---hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 006955 469 QPRSAHYTCVVDLLGRFGL---IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 469 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 542 (624)
.|+..+--.+.+++.+..+ ..+++.++++....+-.-.....--|.-++.+.|++++|.++.+.+++.+|.|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 4666666677778877764 4568888888776321112335556667789999999999999999999996643
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.98 E-value=0.48 Score=38.56 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
..-+.++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 46678999999999999999999754
No 245
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=91.87 E-value=7.2 Score=35.36 Aligned_cols=183 Identities=7% Similarity=-0.087 Sum_probs=77.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhh----HHHHHhc--CCCCCchhHHHHHH
Q 006955 18 QRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQG----AKEVFDG--MEVRDVVTWNSMIS 91 (624)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~--~~~~~~~~~~~l~~ 91 (624)
.+|+.+-..-+.++.+.|..+..-.+.+.+..++...-...+.++++.|.... ...++.. ...++..+-...+.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~ 113 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIE 113 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 34554444455555555543333333333334555555555556655553222 2223321 12445544444444
Q ss_pred HHHhCCC-----hhHHHHHhccC-CCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCC--ChHH
Q 006955 92 GYVCNGL-----IDEALRVFHGM-PLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREG--RIVE 163 (624)
Q Consensus 92 ~~~~~g~-----~~~a~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~ 163 (624)
++...|. ...+...+... ..+++..-...+.++...++.+....+.+.+..++...-...+.++...| ...-
T Consensus 114 aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~ 193 (280)
T 1oyz_A 114 STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI 193 (280)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHH
Confidence 4444331 22333333222 23555555555566666555433333333333445544444444444443 2222
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 006955 164 ARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQ 200 (624)
Q Consensus 164 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 200 (624)
...+...+..++..+-...+.++.+.|+......+..
T Consensus 194 ~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~ 230 (280)
T 1oyz_A 194 RDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCD 230 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHH
Confidence 2222233334455555555555555554433333333
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.87 E-value=0.74 Score=35.82 Aligned_cols=72 Identities=14% Similarity=-0.003 Sum_probs=50.7
Q ss_pred CCcchHHHHHHHhhccCC---hHHHHHHHHHcccCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch
Q 006955 470 PRSAHYTCVVDLLGRFGL---IDEAMNLLNEIRADGIEV--SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV 543 (624)
Q Consensus 470 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 543 (624)
|++.+--.+.+++.+..+ ..+++.++++....+ | ....+--|.-++.+.|+++.|.++.+.+++..|.|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 566666666777776654 456788888877643 4 24455666677888899999999999998888866433
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.28 E-value=4.5 Score=31.91 Aligned_cols=82 Identities=11% Similarity=-0.020 Sum_probs=60.4
Q ss_pred hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCC-CCchHHHHHHHHHhcCChHHHHHH
Q 006955 488 IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN---NIKVGEIAGERVMELEPN-NSGVYLILTEMYLSCGRREDAKRI 563 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 563 (624)
+....+-|.+-. +-.|++.+--.+.+++.+.. +..+++.+++.+....|. .....+.|+-++.+.|++++|.++
T Consensus 22 L~~lr~qY~~E~--~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y 99 (144)
T 1y8m_A 22 LEILRQQVVSEG--GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 99 (144)
T ss_dssp HHHHHHHHHHTT--STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHhc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444331 22577777777777776654 556888999999988874 456688999999999999999999
Q ss_pred HHHHHHCC
Q 006955 564 FAQMKENG 571 (624)
Q Consensus 564 ~~~m~~~~ 571 (624)
.+.+++..
T Consensus 100 ~d~lL~~e 107 (144)
T 1y8m_A 100 VDTLFEHE 107 (144)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99998863
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.88 E-value=2.5 Score=32.88 Aligned_cols=68 Identities=12% Similarity=-0.029 Sum_probs=55.2
Q ss_pred CCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCC-CCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 503 IEVSPTVWGALLGACRIHN---NIKVGEIAGERVMELEPN-NSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 503 ~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
-.|++.+--.+.+++.+.. +..+++.+++.+.+..|. ....+..|+-++.+.|++++|.++.+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3677777777777776654 556788999999988874 4667899999999999999999999998775
No 249
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.58 E-value=5.1 Score=31.27 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHH
Q 006955 240 TWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVF 292 (624)
Q Consensus 240 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (624)
-....++.+...|..++-.+++..+. ++++...-.+..+|.+.|+..+|.+++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 33444445555555555555544422 333344444444444444444443333
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.45 E-value=2.8 Score=30.59 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 487 LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
+.-+..+-++.+....+-|+|.+..+.+.+|.+.+|+..|.++++-+...-.+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 55567777888777778999999999999999999999999999998875544555676664
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.28 E-value=4.2 Score=39.98 Aligned_cols=95 Identities=14% Similarity=0.219 Sum_probs=67.9
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccC--CCCcC---HHHHHHHHHHHHhcCChHHHHHHHHHHHc---cCCCCC----c
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRAD--GIEVS---PTVWGALLGACRIHNNIKVGEIAGERVME---LEPNNS----G 542 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~p~~~----~ 542 (624)
...|...|...|++.+|.+++.++... |..+. ...+..-++.|...+|+.+|..++.++.. ..+.++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356788888999999999999886532 22221 23555666778899999999999988753 223233 3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 543 VYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.+...+..+...++|.+|.+.|.+...
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 477888888889999988887776643
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.73 E-value=25 Score=37.90 Aligned_cols=402 Identities=11% Similarity=0.031 Sum_probs=192.9
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc-CChhHHHHHHHHHHhCCChHHHHHHhc----------
Q 006955 101 EALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA-RDVASWTIMVNGLVREGRIVEARKLFD---------- 169 (624)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~---------- 169 (624)
-+.++|.++..| -|..++++..+.++.+.+.++|..+.. .|...---+.-.+.+.+.-.-..++.+
T Consensus 220 ~l~~Iy~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~k 296 (963)
T 4ady_A 220 KSFDFLMNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPA 296 (963)
T ss_dssp HHHHHHHHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHH
Confidence 355555554322 466777888888899999999988753 333222222222233222111111111
Q ss_pred --cCCCCChhHHHHHHHHHHHcCC--hhHHHHHHHHccc-CCcc--cHHHHHHHHHcCCCHHHH-HHHh-hhCCC-CCcc
Q 006955 170 --KMPAKDVQAWNLMIAGYLDNGC--VGVAEDLFQKMHD-RDLT--SWKQLINGLVNSRRIDAA-ISYF-KQMPE-TCEK 239 (624)
Q Consensus 170 --~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~A-~~~~-~~~~~-~~~~ 239 (624)
++.. +..+-..-...+.+.+. +..-.. ++...+ ++.. +-.++.+++...|-..+. +... +++.+ .+..
T Consensus 297 L~~ILs-g~~~~~Lyl~FL~~~n~~d~~~l~~-~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~ 374 (963)
T 4ady_A 297 LLNILS-GLPTCDYYNTFLLNNKNIDIGLLNK-SKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWA 374 (963)
T ss_dssp HHHHTT-SHHHHHHHHHHHHHHCCCCHHHHHH-HHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHH
T ss_pred HHHHhC-CCChHHHHHHHHHhccccchhhHHH-HHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHH
Confidence 1111 21111222222223332 222222 222222 1211 334566777777644322 1111 11111 1222
Q ss_pred hHHHHH-HHHHhcCChHHHHHHHhhcCCC---C-cch--hhHHHHHHHhcCChHHHHHHHhhcCC-CC--------c--e
Q 006955 240 TWNSII-SVLIRNGLVKEAHSYLEKYPYS---N-IAS--WTNVIVGYFEMGEVGSAIKVFELMTT-RD--------V--T 301 (624)
Q Consensus 240 ~~~~ll-~~~~~~~~~~~a~~~~~~~~~~---~-~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~--~ 301 (624)
-+.++. -+....|+.+++..++....+. + ..+ -..+.-+...+|...++...+..... .+ . .
T Consensus 375 k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir 454 (963)
T 4ady_A 375 KFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLL 454 (963)
T ss_dssp HHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred HHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHH
Confidence 233333 2566788888888888877752 1 111 22233345555655566665554332 22 1 1
Q ss_pred ehhhhhhHhhcCCC-chHHHHHHHHhHHcCCCCCHHHHH--HHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHH
Q 006955 302 VWNVMIFGLGENDL-GEEGLKFFVQMKESGPSPDNATFT--SVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMIT 378 (624)
Q Consensus 302 ~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (624)
.-.++.-+.+..|. -+++.+.+..+.... .+...... .+...+.-.|+.+....++..+.+.. +..+...++.
T Consensus 455 ~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aal 530 (963)
T 4ady_A 455 HGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAV 530 (963)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHH
Confidence 11222223333333 246677777766532 11111122 22234556777777777877766521 2233333333
Q ss_pred H--hHhhCCHHHHHHHhccCC-CCCch-hHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCh
Q 006955 379 M--YARCGNIQSALLEFSSVP-IHDII-SWN---SIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGL 451 (624)
Q Consensus 379 ~--~~~~g~~~~A~~~~~~~~-~~~~~-~~~---~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 451 (624)
+ +.-.|+.+.+..+++.+. ..++. -|. ++..+|+..|+.....+++..+.+. ...+......+.-++...|+
T Consensus 531 gLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 531 GLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSS
T ss_pred HHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCC
Confidence 3 335677777666666554 23332 232 2344677888887777788888864 12222222233334445566
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCCh-HHHHHHHHHcccCCCCcCHHHHHHHHHHH
Q 006955 452 VDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLI-DEAMNLLNEIRADGIEVSPTVWGALLGAC 517 (624)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (624)
.+.+.++++.+.+. ..|.+..-..+.-+....|.. .+++.++..+.. .+|..+-...+.+.
T Consensus 610 ~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 610 YTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp CSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 66667777666553 234444333444444444433 678888888873 66666655555444
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.37 E-value=0.92 Score=43.84 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCccCCc
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE-----NGVKKEPG 577 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 577 (624)
+...++.++...|++.++...+..+...+|-+...+..|+.+|.+.|+..+|.+.|++..+ .|+.|.|.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3455667777889999999988998889998888899999999999999999988888654 47655544
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.68 E-value=29 Score=37.35 Aligned_cols=251 Identities=8% Similarity=-0.042 Sum_probs=128.6
Q ss_pred HHHhcCChHHHHHHHhhcCCC----Ccee--hhhhhhHhhcCCCchHHHHHHHHhHHcCC--C-----CCHHHHHHHHHH
Q 006955 278 GYFEMGEVGSAIKVFELMTTR----DVTV--WNVMIFGLGENDLGEEGLKFFVQMKESGP--S-----PDNATFTSVLTI 344 (624)
Q Consensus 278 ~~~~~g~~~~A~~~~~~~~~~----~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~-----p~~~~~~~ll~~ 344 (624)
+....|+.++++.+++..... +..+ =..+.-+....|..+++..++.......- . +....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 456678888898888877642 2111 12233344555655678887777654321 0 111112222223
Q ss_pred HcCCCC-cHHHHHHHHHHHHhCCCC-CcchhHHHHHHhHhhCCHHHHHHHhccCC-CCCchhHHHHHH--HHHHcCChHH
Q 006955 345 CSDLPT-LDLGRQIHAQAIKIARNQ-FTTVSNAMITMYARCGNIQSALLEFSSVP-IHDIISWNSIIC--GLAYHGYAEK 419 (624)
Q Consensus 345 ~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~--~~~~~~~~~~ 419 (624)
....|. -+.+...+..+....-.. .....-+|...+...|+.+....++..+. ..+......+.. ++...|+.+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 333332 234445555444422110 00111234445556677777666665443 222222222333 3446788888
Q ss_pred HHHHHHHHHHCCCCCCh-hhHH---HHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHH
Q 006955 420 ALELFERMRLTDFKPDD-ITFV---GVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLL 495 (624)
Q Consensus 420 a~~~~~~m~~~g~~p~~-~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (624)
+..+++.+... ++. .-|. .+.-+|+..|+.....+++..+..+ ...++.-...+.-+....|+.+.+.+++
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888763 233 2232 3344788889988888888887764 2223333333444444567666677777
Q ss_pred HHcccCCCCcCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 006955 496 NEIRADGIEVSPTVWGALLGACRIHNNI-KVGEIAGERVM 534 (624)
Q Consensus 496 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 534 (624)
..+.+.+ .|....-..+.-+....|+. ..+...+..+.
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 7666533 33332222222222333333 55666666664
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.55 E-value=9.6 Score=36.49 Aligned_cols=91 Identities=13% Similarity=-0.053 Sum_probs=54.9
Q ss_pred HHHHHhhccCChHHHHHHHHHcccCCCCcC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccC---CCCCch----H
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEVS-----PTVWGALLGACRIHNNIKVGEIAGERVMELE---PNNSGV----Y 544 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~----~ 544 (624)
.++..|...|++.+|.+++.++.+.=-+.| ..++..-+..|...|++.++...+.++.... +.+|.. .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567778888888888777776654211111 1233444456777788888888887776522 123322 3
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHH
Q 006955 545 LILTEMYL-SCGRREDAKRIFAQM 567 (624)
Q Consensus 545 ~~l~~~~~-~~g~~~~A~~~~~~m 567 (624)
..-+..+. ..++|.+|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 34444555 678888887766554
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.24 E-value=3.4 Score=30.19 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 006955 417 AEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479 (624)
Q Consensus 417 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 479 (624)
.-+..+-++.+....+.|++....+.+.+|-+.+++..|.++|+.++.+.+ +...+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHH
Confidence 345555666666666777777777777777777777777777777776532 3344555554
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.38 E-value=7.4 Score=30.20 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 487 LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
|.-+..+-++.+....+-|++.+....+.+|.+.+|+..|.++++-+...-.+...+|-.++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34456677777777778999999999999999999999999999998875544555677664
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.99 E-value=2.3 Score=37.77 Aligned_cols=111 Identities=15% Similarity=0.081 Sum_probs=70.3
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHh
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTVWGALLGACRI 519 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~ 519 (624)
...+.|.+++++..+..-.+. .| |...-..|+..+|-.|+|+.|.+-++...+ +.|+ ...|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHH--
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHHH--
Confidence 456778888888887777764 35 777778888888888888888888887765 4454 23455555442
Q ss_pred cCChHHHHHHHHHHHc--c---CCC-CCchHHHHHHHHH--hcCChHHHHHHHHHHHHC
Q 006955 520 HNNIKVGEIAGERVME--L---EPN-NSGVYLILTEMYL--SCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~--~---~p~-~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 570 (624)
..=++... . .+. .+.-...|+.+.. ..|+.++|.++-.++.+.
T Consensus 79 --------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 --------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11122222 1 111 2234455555544 458888888888888654
No 259
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.96 E-value=6.6 Score=41.24 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=35.2
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERV 533 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 533 (624)
++.+...|+++.|+++.++... ..| +..+|..|..+|...|+++.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4445566777777777777665 345 3667777777777777777777665554
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.63 E-value=24 Score=32.38 Aligned_cols=183 Identities=11% Similarity=0.082 Sum_probs=105.4
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHH--
Q 006955 245 ISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKF-- 322 (624)
Q Consensus 245 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-- 322 (624)
+......|++=+|.+.+ .++..=|.+.+++++|++++..- ...+.+.|+...|-++
T Consensus 20 l~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHH
Confidence 34556678888887774 56677788888888888886432 2334556776655554
Q ss_pred --HHHhHHcCCCCCHHHHHHHHHHHcCCCCcH-HHHHHHHHHHH----hCC--CCCcchhHHHHHHhHhhCCHHHHHHHh
Q 006955 323 --FVQMKESGPSPDNATFTSVLTICSDLPTLD-LGRQIHAQAIK----IAR--NQFTTVSNAMITMYARCGNIQSALLEF 393 (624)
Q Consensus 323 --~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (624)
++-..+.+++++......++..+......+ .-..+.+.+++ .|. .-++.....+...|.+.|++.+|+..|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 445566688999888888887776543211 22334444433 332 235667777888888888888887765
Q ss_pred ccCCCCCchhHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 394 SSVPIHDIISWNSIICGLAYH---GYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
-.-...++..+..++.-+... |...++-- . ....+-.|...|+...|..+++...+
T Consensus 158 i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f-~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 158 MLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------F-FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------H-HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HhCCCccHHHHHHHHHHHHHhcCCCCcchHHH--------------H-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 422222333444443333222 22222111 1 11122234456788888887776554
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.13 E-value=33 Score=33.56 Aligned_cols=97 Identities=11% Similarity=-0.001 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCh---hhHHHHHHHhcccChHHHHHHHHHHhhhhc-CCCCC----cc
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLT--DFKPDD---ITFVGVLSACSYAGLVDQGRYYFDCMKNKY-FLQPR----SA 473 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~----~~ 473 (624)
...|...|...|++.+|..++.++... |..+.. ..+...++.|...+++..|..++.++.... ...++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356778888999999999999998753 322221 355666778899999999999999875321 11122 34
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
.+...+..+...+++.+|-+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 567788888899999999988887653
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.76 E-value=9.6 Score=27.67 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=46.4
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV 440 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 440 (624)
+..+...|++++|..+.+....||...|.++-. .+.|-.+++...+.++..+| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 445667899999999999999999988877654 57788888888887887765 45444443
No 263
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.72 E-value=1.6 Score=42.12 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=33.8
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHccc-----CCCCcCHH
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRA-----DGIEVSPT 508 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~ 508 (624)
+.++...|+.+++...+..+... .| +...+..+|.+|.+.|+..+|++.|++..+ .|+.|++.
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFE---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 33444555566665555555542 23 555566666666666666666666555322 25555544
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.99 E-value=10 Score=27.55 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=44.3
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV 440 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 440 (624)
+..+...|++++|..+.+....||...|.++-. .+.|-.+++...+.++...| .|....|.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 445667889999999998888888888877654 46677778887777777665 44444443
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.07 E-value=14 Score=41.49 Aligned_cols=190 Identities=11% Similarity=-0.012 Sum_probs=104.2
Q ss_pred HHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--------------------
Q 006955 375 AMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP-------------------- 434 (624)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-------------------- 434 (624)
.++..+...+..+-+.++..-. +.++..--.+..+|...|++++|.+.|++... |+.+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccc
Confidence 3444445555555554433222 22333333444556666666666666655321 1110
Q ss_pred ---ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-C--cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH
Q 006955 435 ---DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-R--SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT 508 (624)
Q Consensus 435 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (624)
-..-|..++..+.+.+..+.+.++-+.+.+..+-.+ + ...|..+.+.+...|++++|-..+..+.... --..
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~ 972 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKS 972 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHH
Confidence 112355666777777888888877776665421111 1 1257778888889999999988888777533 2355
Q ss_pred HHHHHHHHHHhcCCh------------HHHHHHHH-HHHcc-CCCC-CchHHHHHHHHHhcCChHHHHH-HHHHHH
Q 006955 509 VWGALLGACRIHNNI------------KVGEIAGE-RVMEL-EPNN-SGVYLILTEMYLSCGRREDAKR-IFAQMK 568 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~------------~~a~~~~~-~~~~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 568 (624)
.+..|+...+..|.. ++...++. ++... .+.+ |..|..|-..+...|++..|.. +|+.+.
T Consensus 973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 677777666555544 33333333 23332 3333 3345555555667777776665 455443
No 266
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.05 E-value=9.2 Score=31.12 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=13.6
Q ss_pred HHHHhhccCChHHHHHHHHHccc
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
+..+|.+.|++++|+.+++.+..
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHCCHHHHHHHHhcCCc
Confidence 45555666666666666665543
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.91 E-value=7.3 Score=30.23 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 006955 418 EKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479 (624)
Q Consensus 418 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 479 (624)
-+..+-++.+....+.|++......+.+|-+.+++..|.++|+-++.+. .+...+|..++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~l 129 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHH
Confidence 3455556666666677888888888888888888888888887777653 34455565554
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.86 E-value=12 Score=33.37 Aligned_cols=120 Identities=11% Similarity=0.062 Sum_probs=75.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcc----hHHHHHHHhhc
Q 006955 410 GLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSA----HYTCVVDLLGR 484 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~ 484 (624)
...+.|..+++++.+..-.+. .|. ...-..++..++-.|++++|.+-++...+ +.|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 455678888888888877774 444 44555677788888999999888887776 345432 33333332
Q ss_pred cCChHHHHHHHHHcccCCCCc-----CHHHHHHHHHHH--HhcCChHHHHHHHHHHHccCCCCCchH
Q 006955 485 FGLIDEAMNLLNEIRADGIEV-----SPTVWGALLGAC--RIHNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p-----~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
+..=.+..+.+-.| .+.-...++.+. ...|+.++|..+-.++.+..|..+...
T Consensus 78 -------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~ 137 (273)
T 1zbp_A 78 -------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 137 (273)
T ss_dssp -------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred -------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCc
Confidence 22222222222222 233445555554 467999999999999999888766533
No 269
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=78.43 E-value=46 Score=34.31 Aligned_cols=321 Identities=9% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCHHHHHHHhhhC---CCCCcchHHHHHHHHHhcCChHHHHHHHhhcC-----------------------
Q 006955 212 QLINGLVNSRRIDAAISYFKQM---PETCEKTWNSIISVLIRNGLVKEAHSYLEKYP----------------------- 265 (624)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------------------- 265 (624)
.+|..|.++|++++|.++.++. .+.-...|...+..++...+..--.++-.++.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~I 236 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVYKL 236 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q ss_pred --------------CCCcchhhHHHHHHHhcC-----------ChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHH
Q 006955 266 --------------YSNIASWTNVIVGYFEMG-----------EVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGL 320 (624)
Q Consensus 266 --------------~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 320 (624)
..++.-|--+--...+.+ -+.+-.+.+.+.-+..-.. .....+.-.|+++.|+
T Consensus 237 ig~cD~~~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~--lYf~vLlLtgqFE~AI 314 (661)
T 2qx5_A 237 IGRCDLSRKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN--YYLQTLLLSGLYGLAI 314 (661)
T ss_dssp HHTCCGGGCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT--CHHHHHHHTTCHHHHH
T ss_pred HhcccccccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh--HHHHHHHHHhhHHHHH
Q ss_pred HHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh---CCHHHHHHHhccCC
Q 006955 321 KFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC---GNIQSALLEFSSVP 397 (624)
Q Consensus 321 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 397 (624)
+++-.. ...+.+.+.+.+.-+.-.+- -+.+..........-+..||..|.+. .+...|.+.|--+.
T Consensus 315 ~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 315 DYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAVEYLVLIT 383 (661)
T ss_dssp HHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCHHHHHHHHHGGG
T ss_pred HHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q ss_pred CCC-----chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCc
Q 006955 398 IHD-----IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRS 472 (624)
Q Consensus 398 ~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 472 (624)
..+ ...+..+-......++++.-+.- +.||......++.-+...=+++.-.++.+.+...
T Consensus 384 l~~g~~~~~~~~~~l~eLvletr~f~~LLG~--------i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~------- 448 (661)
T 2qx5_A 384 LNEGPTDVELCHEALRELVLETKEFTVLLGK--------IGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQ------- 448 (661)
T ss_dssp GSCCHHHHHHHHHHHHHHHHHHCCHHHHHCE--------ECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHH-------
T ss_pred ccCCchHHHHHHHHHHHHHHhcccHHHHcCC--------cCCCCCcCcchHHHhhcccccccHHHHHHHHHHH-------
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC----------------hHHHHHHHHH----
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNN----------------IKVGEIAGER---- 532 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~----------------~~~a~~~~~~---- 532 (624)
...-+...|++++|+.+|.-+.+ ..--..+.+.++.-....-+ ...|.++.+.
T Consensus 449 -----aA~~ae~~G~~~dAi~LY~La~~--~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~ 521 (661)
T 2qx5_A 449 -----AARRADEDGRIYDSILLYQLAEE--YDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDN 521 (661)
T ss_dssp -----HHHHHHHTTCHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcC
Q ss_pred ---HHccCCCCCchHHHHHHH-----HHhcCChHHHHHHHHHH
Q 006955 533 ---VMELEPNNSGVYLILTEM-----YLSCGRREDAKRIFAQM 567 (624)
Q Consensus 533 ---~~~~~p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m 567 (624)
..+..+.+..++..|... +.+.|+|+.|.+.++++
T Consensus 522 ~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 522 AGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred chhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.25 E-value=43 Score=31.02 Aligned_cols=182 Identities=12% Similarity=0.063 Sum_probs=106.2
Q ss_pred HHHHhcCCh---HHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHH
Q 006955 246 SVLIRNGLV---KEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKF 322 (624)
Q Consensus 246 ~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (624)
......|++ =+|.+.+ .++..=|.+.+++++|++++-.- ...+.+.|+...+-++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHH
Confidence 455667887 6777664 45667788888888888876422 2334555666554444
Q ss_pred H----HHhHHcCCCCCHHHHHHHHHHHcCCCCcH-HHHHHHHHH----HHhC--CCCCcchhHHHHHHhHhhCCHHHHHH
Q 006955 323 F----VQMKESGPSPDNATFTSVLTICSDLPTLD-LGRQIHAQA----IKIA--RNQFTTVSNAMITMYARCGNIQSALL 391 (624)
Q Consensus 323 ~----~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 391 (624)
- +-..+.++++|.....-++..+.....-+ .-..+.+.+ .+.| ..-++.....+...|.+.+++.+|+.
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 3 45566788899888888887776655422 223333333 3334 23456777788899999999999988
Q ss_pred HhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 392 EFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
-|=.-..+++..+..++.-+...+...+ ++... ...+-.|...+++..|..+++...+
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7742222233455444443333332111 11112 2222335556777777776655443
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.81 E-value=8.4 Score=37.66 Aligned_cols=94 Identities=12% Similarity=0.014 Sum_probs=47.9
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC--CCCCch----HH
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV--SPTVWGALLGACRIHNNIKVGEIAGERVMELE--PNNSGV----YL 545 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~----~~ 545 (624)
+...+...|.+.|+++.|.+.+.++...-..+ -...+-..++.+...+|+..+...+.++.... ..++.. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 44456666666666666666666655431112 23355555566666666666666666665421 112221 12
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 006955 546 ILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~m 567 (624)
.-+..+...++|.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2233344556666666655443
No 272
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.53 E-value=38 Score=38.01 Aligned_cols=145 Identities=7% Similarity=-0.011 Sum_probs=69.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhcc
Q 006955 406 SIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRF 485 (624)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 485 (624)
.++..+...+.++-+.++..- .+-+...--.+..++...|++++|.++|++... ++.++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~---------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSC----------
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhh----------
Confidence 455667777777766655433 222333333445577888999999999987653 232211100
Q ss_pred CChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc-----hHHHHHHHHHhcCChHHH
Q 006955 486 GLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG-----VYLILTEMYLSCGRREDA 560 (624)
Q Consensus 486 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A 560 (624)
........+...... ...-+.-|..++..+...|.++.+.++.+.+++..+.+.. .|..+.+.+...|++++|
T Consensus 880 ~~~~~~~~~~~~~~~--~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 880 AVLREFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp SSHHHHHHHHHTTTS--CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred hhhcccccccccccc--cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 000000011111000 0112234445555555555556665555555553322221 344555555555666666
Q ss_pred HHHHHHHHH
Q 006955 561 KRIFAQMKE 569 (624)
Q Consensus 561 ~~~~~~m~~ 569 (624)
-..+-.+..
T Consensus 958 y~aL~~~pd 966 (1139)
T 4fhn_B 958 HVALMVLST 966 (1139)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHhCCC
Confidence 555544433
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.60 E-value=51 Score=30.53 Aligned_cols=164 Identities=16% Similarity=0.131 Sum_probs=99.8
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCChhhHHHHHHHhccc
Q 006955 374 NAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALEL----FERMRLTDFKPDDITFVGVLSACSYA 449 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~ 449 (624)
.++..-|.+.+++++|++++.. -...+.+.|....|-++ ++...+.+++++......++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 4466678889999999887532 22345566666554444 46666678888888877777766554
Q ss_pred Ch--HHHHHHHHHH----hhhhcCCCC--CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC
Q 006955 450 GL--VDQGRYYFDC----MKNKYFLQP--RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN 521 (624)
Q Consensus 450 g~--~~~a~~~~~~----~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 521 (624)
.. .+. ..++++ -.+ .|-.| ++..-..+...|.+.+++.+|..-|- . |-.+++..+..++..+...+
T Consensus 108 ~~~~p~r-~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 108 QPGEPVR-KRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CTTCHHH-HHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS
T ss_pred CCCCcHH-HHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc
Confidence 42 111 122222 222 22223 66777788889999999999988873 2 23455566655555554443
Q ss_pred ChHHHHHHHHHHHccCCCCCchHH-HHHHHHHhcCChHHHHHHHHHHHH
Q 006955 522 NIKVGEIAGERVMELEPNNSGVYL-ILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 522 ~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
. |.....|. ..+--|.-.|+...|..+++.+.+
T Consensus 182 ~---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 E---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp C---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3 22222222 233346778899999998877765
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.20 E-value=34 Score=28.87 Aligned_cols=53 Identities=11% Similarity=-0.005 Sum_probs=40.4
Q ss_pred cCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 485 FGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
.+...++.++|..|...|+.-. +..|......+-..|++++|..+|+..++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4456788888888887776654 5577777777788888888888888888744
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.23 E-value=17 Score=32.57 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=14.3
Q ss_pred HHHHHHHhcCChHHHHHHHhhcC
Q 006955 274 NVIVGYFEMGEVGSAIKVFELMT 296 (624)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~~~ 296 (624)
..+...++.|+.+....+++.-.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hHHHHHHHcCCHHHHHHHHHcCC
Confidence 34555666777777766666543
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.20 E-value=77 Score=30.24 Aligned_cols=227 Identities=13% Similarity=0.006 Sum_probs=109.5
Q ss_pred hhhhHhhcCCCchHHHHHHHHhHHcCCCCCH-----HHHHHHHHHHcCCCCcHHHHHHHHHHHHh--CCCCCcchhHHHH
Q 006955 305 VMIFGLGENDLGEEGLKFFVQMKESGPSPDN-----ATFTSVLTICSDLPTLDLGRQIHAQAIKI--ARNQFTTVSNAMI 377 (624)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~ 377 (624)
-++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...++..++...+...... .+.+++.+.. .+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a-~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG-AL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH-HH
Confidence 4566777888888888888777653112221 22334444556666777776666655432 1222222211 11
Q ss_pred HHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHH-HcCChHHHHHHHHHHHHC-C-C-CCC---hhhHHHHHHHhcccC
Q 006955 378 TMYARCGNIQSALLEFSSVPIHDIISWNSIICGLA-YHGYAEKALELFERMRLT-D-F-KPD---DITFVGVLSACSYAG 450 (624)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~-g-~-~p~---~~~~~~ll~~~~~~g 450 (624)
..+ -...+. ..+++..|...|-+..+. . . .|. ...|..+.. .....
T Consensus 183 ~~~--------------------------~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll~~~ 235 (394)
T 3txn_A 183 DLQ--------------------------SGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IMLGQ 235 (394)
T ss_dssp HHH--------------------------HHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHTTC
T ss_pred HHH--------------------------hhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHcCC
Confidence 111 112334 456666665555544321 0 0 111 112222222 12112
Q ss_pred hHHHHHHHHH-HhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 006955 451 LVDQGRYYFD-CMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIA 529 (624)
Q Consensus 451 ~~~~a~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 529 (624)
..+...++. .....+ ..|....+..++.+| ..+++.+..+++...... +..|+.....+-..+. .--...
T Consensus 236 -r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~~-----~Ir~~~ 306 (394)
T 3txn_A 236 -SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVIVQAHLGTLYD-----TMLEQN 306 (394)
T ss_dssp -GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHHH-----HHHHHH
T ss_pred -HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHHH-----HHHHHH
Confidence 111112221 111111 235555555566554 567888888888776542 4556543211111110 000111
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006955 530 GERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 530 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 572 (624)
+.++ ..|-....+..++..+.- ..+++...+.+|...|.
T Consensus 307 L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 307 LCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 1112 456666778888877654 68899999999988873
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.87 E-value=21 Score=34.85 Aligned_cols=94 Identities=10% Similarity=-0.141 Sum_probs=50.7
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCC------CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCChhh--HH
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVP------IHDIISWNSIICGLAYHGYAEKALELFERMRLT---DFKPDDIT--FV 440 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~--~~ 440 (624)
+...+...|.+.|+++.|.+.+.++. ..-...+-..+..+...+++..+...+.+.... +-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 44556777777777777777776654 112345555666666677777777776665432 21222211 11
Q ss_pred HHHHHhcccChHHHHHHHHHHhhhh
Q 006955 441 GVLSACSYAGLVDQGRYYFDCMKNK 465 (624)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~~~~~ 465 (624)
.-...+...+++..|.+.|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122344456666666666555443
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.15 E-value=34 Score=24.92 Aligned_cols=79 Identities=11% Similarity=0.097 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHhccc-CChhHHHHHH--HHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcc
Q 006955 127 CQRMDLAESYFKEMGA-RDVASWTIMV--NGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMH 203 (624)
Q Consensus 127 ~~~~~~a~~~~~~~~~-~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 203 (624)
....++|..+-+.+.. ++ .-...+| ..+.+.|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.++.
T Consensus 19 ~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 3456667766666553 33 3334444 45778999999999999888888888887765 46777777777766666
Q ss_pred cCCcc
Q 006955 204 DRDLT 208 (624)
Q Consensus 204 ~~~~~ 208 (624)
.++..
T Consensus 96 ~sg~p 100 (115)
T 2uwj_G 96 GSSDP 100 (115)
T ss_dssp TCSSH
T ss_pred hCCCH
Confidence 55543
No 279
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.19 E-value=36 Score=24.85 Aligned_cols=79 Identities=11% Similarity=0.145 Sum_probs=52.1
Q ss_pred CCChHHHHHHHHhccc-CChhHHHHHH--HHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcc
Q 006955 127 CQRMDLAESYFKEMGA-RDVASWTIMV--NGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMH 203 (624)
Q Consensus 127 ~~~~~~a~~~~~~~~~-~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 203 (624)
....++|..+-+.+.. ++ .-...+| ..+.+.|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.++.
T Consensus 20 ~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 3456666666665543 23 3333343 45678888888888888888888888877765 45677777776666666
Q ss_pred cCCcc
Q 006955 204 DRDLT 208 (624)
Q Consensus 204 ~~~~~ 208 (624)
.++..
T Consensus 97 ~sg~p 101 (116)
T 2p58_C 97 RSQDP 101 (116)
T ss_dssp TCCCH
T ss_pred hCCCH
Confidence 55543
No 280
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=64.25 E-value=88 Score=28.68 Aligned_cols=168 Identities=14% Similarity=-0.051 Sum_probs=96.1
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHH----HHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALE----LFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
|.++..-|.+.+++++|++++.. -...+.++|....|-+ +++...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34566678888888888877532 2234556677655544 45566667888888777777766544
Q ss_pred cC-----hHHHHHHHHHHhhhhcCCCC--CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc-
Q 006955 449 AG-----LVDQGRYYFDCMKNKYFLQP--RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH- 520 (624)
Q Consensus 449 ~g-----~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~- 520 (624)
.. +.+-..+.++...+. |-.| ++.....+...|.+.|++.+|...|--.. .-|+..+..++.-+...
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHT
T ss_pred CCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhc
Confidence 22 112222222222222 1112 56677778888888888888887665211 22445555555444433
Q ss_pred --CChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 521 --NNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 521 --g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
|...++--++ ...+--|.-.|+...|..+++...+.
T Consensus 180 ~~~~~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 180 DDIEDSTVAEFF--------------SRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp TCCCHHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4333322211 11222356778999999998877543
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.48 E-value=66 Score=25.70 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=23.8
Q ss_pred HHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 491 AMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
+.++|..|...|+-.. +..|......+-..|++++|..+++..++
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555554432 33444444555555555555555555555
No 282
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=59.43 E-value=1.6e+02 Score=30.14 Aligned_cols=428 Identities=11% Similarity=-0.012 Sum_probs=217.6
Q ss_pred HHhCCChhHHHHHhccCCCCCcccH---HHHHHHHHcCCChHHHHHHHHhccc-C-ChhHHHHHHHHHHhCCChHHHHHH
Q 006955 93 YVCNGLIDEALRVFHGMPLKDVVSW---NLVIGALVNCQRMDLAESYFKEMGA-R-DVASWTIMVNGLVREGRIVEARKL 167 (624)
Q Consensus 93 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~ 167 (624)
..+.|++..+..+...+..-....| ..+...+ ......+...++++-.. | ....-...+..+.+.+++......
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~ 94 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAF 94 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHh
Confidence 3456777777777666643112222 2222111 12245555555554432 1 112234445566778888888887
Q ss_pred hccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHccc---CCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHH
Q 006955 168 FDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHD---RDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSI 244 (624)
Q Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 244 (624)
+.. ...+...-.....+....|+..+|....+.+-. .....+..++..+.+.|...... .-.-
T Consensus 95 ~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~-------------~~~R 160 (618)
T 1qsa_A 95 SPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLA-------------YLER 160 (618)
T ss_dssp CCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHH-------------HHHH
T ss_pred ccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHH-------------HHHH
Confidence 776 444555555666777778887766666655532 23445677777766655432211 1122
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCce---ehhhhhhHhhcCCCchHHHH
Q 006955 245 ISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVT---VWNVMIFGLGENDLGEEGLK 321 (624)
Q Consensus 245 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~ 321 (624)
+......|+...|..+...+.+........++..+.. ...+....... .++.. .+...+.-+.+ .+.+.|..
T Consensus 161 ~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~ 235 (618)
T 1qsa_A 161 IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARL 235 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHH
Confidence 3444556666666666555421111112223322222 22223322222 11111 11111222233 36788888
Q ss_pred HHHHhHHcCCCCCHHHH----HHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC
Q 006955 322 FFVQMKESGPSPDNATF----TSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP 397 (624)
Q Consensus 322 ~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (624)
.+....... ..+.... ..+.......+....+...+...... ..+.....-.+..-.+.|+++.|...|+.+.
T Consensus 236 ~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~ 312 (618)
T 1qsa_A 236 MIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLP 312 (618)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHcc
Confidence 888876543 2233222 22222334445345555555544332 2333334445555567899999999999998
Q ss_pred CCC---chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC-cc
Q 006955 398 IHD---IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-SA 473 (624)
Q Consensus 398 ~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 473 (624)
... ....-=+..++...|+.++|..+|+.+.+. .+|..++.+ .+.|..-. . ....+.+. ..
T Consensus 313 ~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~lAa-~~Lg~~~~-------~-~~~~~~~~~~~ 377 (618)
T 1qsa_A 313 MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPMVAA-QRIGEEYE-------L-KIDKAPQNVDS 377 (618)
T ss_dssp TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHHHH-HHTTCCCC-------C-CCCCCCSCCCC
T ss_pred ccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHHHH-HHcCCCCC-------C-CCCCCChhHHh
Confidence 432 222233455777889999999999998752 234333321 11221000 0 00001110 00
Q ss_pred -----hHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC---CCCchHH
Q 006955 474 -----HYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEP---NNSGVYL 545 (624)
Q Consensus 474 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~ 545 (624)
.-..-+..+...|....|...+..+... .++.....+.......|....++....+....+. .-|..|.
T Consensus 378 ~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~ 454 (618)
T 1qsa_A 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYN 454 (618)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTH
T ss_pred hhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchH
Confidence 1112345567889999999888877652 3334444555555678888888766655433220 1133466
Q ss_pred HHHHHHHhcCChHHHH
Q 006955 546 ILTEMYLSCGRREDAK 561 (624)
Q Consensus 546 ~l~~~~~~~g~~~~A~ 561 (624)
.++.-+.+.-.++...
T Consensus 455 ~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 455 DLFKRYTSGKEIPQSY 470 (618)
T ss_dssp HHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHcCCCHHH
Confidence 6666666555555443
No 283
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=58.92 E-value=1.1e+02 Score=28.04 Aligned_cols=128 Identities=12% Similarity=0.042 Sum_probs=77.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc---cCC
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR---FGL 487 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~ 487 (624)
+...|++++|+..|+..... ..+.......+.+++.+++....+ .+...-++.--+ ..+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~----------i~l~~v~~~~e~~e~~eli~icrE--------Yilal~iEl~Rr~l~~~~ 185 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYR----------ITLLMVDDAEDEKLAHKILETARE--------YILGLSIELERRSLKEGN 185 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------HHTCCBCSSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHTCCTTC
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeeccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCccc
Confidence 35688999999998887642 111111122334444444433222 011111111111 135
Q ss_pred hHHHHHHHHHcccCCCCcCHH--HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 488 IDEAMNLLNEIRADGIEVSPT--VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
..+..++---+...++.|... +++..+..+.+.+++..|..+.++++++.|. + ...++|.+++.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~-------------~~a~qArkil~ 251 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS-G-------------PRAEQARKIKN 251 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS-S-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-H-------------HHHHHHHHHHH
Confidence 566677777777666777643 6778888899999999999999999999983 2 23456777776
Q ss_pred HHHHC
Q 006955 566 QMKEN 570 (624)
Q Consensus 566 ~m~~~ 570 (624)
.-.+.
T Consensus 252 ~ce~~ 256 (325)
T 3mv2_A 252 KADSM 256 (325)
T ss_dssp HHHTS
T ss_pred HHhcC
Confidence 65543
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.35 E-value=79 Score=25.67 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=14.5
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 541 SGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+..|...+..+...|++.+|.++|..-.+.
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 334444444555555555555555444443
No 285
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=56.04 E-value=1.5e+02 Score=28.57 Aligned_cols=361 Identities=11% Similarity=0.043 Sum_probs=170.9
Q ss_pred HHHHHHHcCChhHHHHHHHHcccCCcc--cHHHHHHHHHcCCCHHHHHHHhhhCCCCCcc--hHHHHHHHHHhcCChHHH
Q 006955 182 MIAGYLDNGCVGVAEDLFQKMHDRDLT--SWKQLINGLVNSRRIDAAISYFKQMPETCEK--TWNSIISVLIRNGLVKEA 257 (624)
Q Consensus 182 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a 257 (624)
.+...+..|+++-+..+++.-...+.. ...+.+...+..|+.+-+..+++.-...+.. .-.+.+...+..|+.+-.
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v 96 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV 96 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence 344557789999888888765443322 1223455556678888777777765443221 112234455567888777
Q ss_pred HHHHhhcCCCCcc--hhhHHHHHHHhcCChHHHHHHHhhcCCCC---ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCC
Q 006955 258 HSYLEKYPYSNIA--SWTNVIVGYFEMGEVGSAIKVFELMTTRD---VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPS 332 (624)
Q Consensus 258 ~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 332 (624)
..+++.-..++.. .....+...++.|+.+.+..+++.-...+ ..-++ .+...+..|+.+- ++.+.+.|..
T Consensus 97 ~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~----v~~Ll~~g~~ 171 (437)
T 1n11_A 97 KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRV----AELLLERDAH 171 (437)
T ss_dssp HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCC
T ss_pred HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHH----HHHHHhCCCC
Confidence 7777654432221 12234555667788888777776543322 11222 3333445555443 3344445544
Q ss_pred CCHH---HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchh--HHHHHHhHhhCCHHHHHHHhccCCCC---CchhH
Q 006955 333 PDNA---TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVS--NAMITMYARCGNIQSALLEFSSVPIH---DIISW 404 (624)
Q Consensus 333 p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 404 (624)
|+.. ..+ .+...+..|+.+ +.+.+.+.|..++.... ...+...+..|+.+-+..+++.-... +....
T Consensus 172 ~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 246 (437)
T 1n11_A 172 PNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 246 (437)
T ss_dssp TTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred CCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 4321 111 222333445544 33444455555443221 23344556677877777777654322 22223
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh---hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC---cchHHHH
Q 006955 405 NSIICGLAYHGYAEKALELFERMRLTDFKPDDI---TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR---SAHYTCV 478 (624)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 478 (624)
+.+. ..+..|+.+ +++.+.+.|..++.. ..+. +...+..|+.+-+..+++. |..++ ....+.|
T Consensus 247 t~L~-~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~-----g~~~~~~~~~g~t~L 315 (437)
T 1n11_A 247 TPLH-LAAQEGHAE----MVALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKH-----GVMVDATTRMGYTPL 315 (437)
T ss_dssp CHHH-HHHHTTCHH----HHHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHH-----TCCTTCCCSSCCCHH
T ss_pred CHHH-HHHHCCCHH----HHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhC-----CccCCCCCCCCCCHH
Confidence 3333 334555544 334444555544431 1122 2223345666555444432 23332 2222333
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChH
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRE 558 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 558 (624)
...+..|+.+-+.-+++.-.... ..+..-.+.|.. ....|..+-...+++.-...+..+......+-. ..+.|. .
T Consensus 316 -~~A~~~g~~~~v~~Ll~~gad~n-~~~~~g~t~L~~-A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~-A~~~g~-~ 390 (437)
T 1n11_A 316 -HVASHYGNIKLVKFLLQHQADVN-AKTKLGYSPLHQ-AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI-AKRLGY-I 390 (437)
T ss_dssp -HHHHHSSCSHHHHHHHHTTCCTT-CCCTTSCCHHHH-HHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH-HHHTTC-H
T ss_pred -HHHHHcCcHHHHHHHHhcCCCCC-CCCCCCCCHHHH-HHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHH-HHHcCc-H
Confidence 33455677665555554322111 112222223333 335677766666665443333223222222222 233343 4
Q ss_pred HHHHHHHHHH
Q 006955 559 DAKRIFAQMK 568 (624)
Q Consensus 559 ~A~~~~~~m~ 568 (624)
+..++++...
T Consensus 391 ~~~~~l~~~~ 400 (437)
T 1n11_A 391 SVTDVLKVVT 400 (437)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcc
Confidence 5556665543
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.08 E-value=71 Score=26.95 Aligned_cols=58 Identities=21% Similarity=0.099 Sum_probs=42.7
Q ss_pred cChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP 507 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (624)
.+.......+|..|... |+-- -...|......+...|++.+|.++|+..++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 44466788888888765 4544 4566778888888888888888888888877766643
No 287
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=49.23 E-value=21 Score=27.61 Aligned_cols=52 Identities=6% Similarity=-0.161 Sum_probs=22.8
Q ss_pred cccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCC
Q 006955 140 MGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGC 191 (624)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (624)
+..+|+..-...+.++.+.|+.+....+...+..++..+-...+.++.+.|+
T Consensus 51 L~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 51 LSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp GGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred HcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3334555555555555555543322222222223444444444445555444
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.92 E-value=1.4e+02 Score=26.24 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=10.6
Q ss_pred HHHHHHhCCChHHHHHHhcc
Q 006955 151 MVNGLVREGRIVEARKLFDK 170 (624)
Q Consensus 151 l~~~~~~~g~~~~a~~~~~~ 170 (624)
.+...++.|+.+-...+++.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34444556666655555544
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.26 E-value=41 Score=26.06 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=36.5
Q ss_pred hHHHHHHHhcCChHHHHHHHhhcCCCC---ceehhhhhhHhhcCCC--chHHHHHHHHhHHcCCCCCHH
Q 006955 273 TNVIVGYFEMGEVGSAIKVFELMTTRD---VTVWNVMIFGLGENDL--GEEGLKFFVQMKESGPSPDNA 336 (624)
Q Consensus 273 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 336 (624)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.+. .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 456666777777777777777776542 1222333344444332 345677777777666554443
No 290
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=46.37 E-value=46 Score=24.17 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=22.0
Q ss_pred CHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHH
Q 006955 222 RIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEA 257 (624)
Q Consensus 222 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 257 (624)
..++|.++++.+.+.++.+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 456666666666666666666666666555554444
No 291
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.55 E-value=1.1e+02 Score=26.00 Aligned_cols=210 Identities=8% Similarity=-0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCcchhH--HHHHHhHhhCCHHHHHHHhccCC----CCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 006955 355 RQIHAQAIKIARNQFTTVSN--AMITMYARCGNIQSALLEFSSVP----IHDIISWNSIICGLAYHGYAEKALELFERMR 428 (624)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 428 (624)
..+++.+.+.|..++..... ..+...+..|+.+-+..+++.-. ..+...++.+..+..... .++++.+.
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~-----~~~v~~Ll 96 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH-----LSMVVQLM 96 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC-----HHHHHHHH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC-----HHHHHHHH
Q ss_pred HCCCCCChhhHH--HHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC
Q 006955 429 LTDFKPDDITFV--GVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS 506 (624)
Q Consensus 429 ~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 506 (624)
+.|..|+..... ..+...+..|+.+-+..+++.-.. +......-...+...+..+......+++.+....--..+
T Consensus 97 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~ 173 (240)
T 3eu9_A 97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD 173 (240)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCC
T ss_pred HcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC---ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhh
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 006955 507 PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVK 573 (624)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 573 (624)
...-.+.+......|+.+.+..+++.....+..+......+-.+ .+.|+.+-+.-+++...+.+..
T Consensus 174 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 174 KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA-KQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp TTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHH-HHTTCHHHHHHHHHHC------
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHcCcHHHHHHHHHhhhccCcC
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.95 E-value=66 Score=24.86 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCChHHHHHHhccCCCC
Q 006955 149 TIMVNGLVREGRIVEARKLFDKMPAK 174 (624)
Q Consensus 149 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 174 (624)
..++.-|...||.++|.+.++++..|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p 36 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVP 36 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 34445555555555655555555433
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.43 E-value=35 Score=27.38 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=34.8
Q ss_pred hHHHHHHHhcCChHHHHHHHhhcCCCC---ceehhhhhhHhhcCCC--chHHHHHHHHhHHcCCCCCHH
Q 006955 273 TNVIVGYFEMGEVGSAIKVFELMTTRD---VTVWNVMIFGLGENDL--GEEGLKFFVQMKESGPSPDNA 336 (624)
Q Consensus 273 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 336 (624)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 445666666777777777777776542 1222333334443222 345666777776666544443
No 294
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=39.89 E-value=22 Score=27.51 Aligned_cols=52 Identities=13% Similarity=-0.073 Sum_probs=28.0
Q ss_pred CCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChH
Q 006955 111 LKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIV 162 (624)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 162 (624)
.+++..-...+.++.+.++......+.+.+..+|..+-...+.++.+.|+.+
T Consensus 53 d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~~ 104 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGER 104 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH
Confidence 3555555555566666665443333444443456666666666666666543
No 295
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.50 E-value=2.4e+02 Score=26.36 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=40.9
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCCCCCc---hhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCChhh
Q 006955 374 NAMITMYARCGNIQSALLEFSSVPIHDI---ISWNSIICGLAYHGY--AEKALELFERMRLTDFKPDDIT 438 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~ 438 (624)
+.++.=|...|+.++|...++++..|.. .....+..++-+.++ .+....++..+.+.|+-+....
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4477778888999999999888886642 223333444443332 3457777777777765554433
No 296
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=38.72 E-value=1.1e+02 Score=25.57 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=31.1
Q ss_pred hHHHHHHHHHcccCCCCcCHHHH-----HHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHH
Q 006955 488 IDEAMNLLNEIRADGIEVSPTVW-----GALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLIL 547 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 547 (624)
++.|+.+++.+...- .+-.... ...+..|.+.|.+++|.+++++.....|.+...-.-|
T Consensus 94 LESAl~v~~~I~~e~-~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL 157 (211)
T 3bqo_A 94 LESALMIWGSIEKEH-DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKL 157 (211)
T ss_dssp HHHHHHHHTTSCSCC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHH
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 456666776666532 1111122 2233558888888888888888877665444433333
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.62 E-value=86 Score=27.31 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=43.8
Q ss_pred HHHhhccCChHHHHHHHHHcccC--CCCc----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRAD--GIEV----SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~--g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
++.+....++++|.+++++..+. ++++ +.......+..-.....-..+..+.+.+.. ...+......+..+.
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 34555666666666666543321 1111 111122222222233333344444444422 224555666667777
Q ss_pred hcCChHHHHHHHHHHHH
Q 006955 553 SCGRREDAKRIFAQMKE 569 (624)
Q Consensus 553 ~~g~~~~A~~~~~~m~~ 569 (624)
+.|+-++|.++|-+.+.
T Consensus 103 rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 103 KLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHHH
Confidence 88888888887766654
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.30 E-value=1.8e+02 Score=25.88 Aligned_cols=15 Identities=7% Similarity=-0.082 Sum_probs=6.8
Q ss_pred hHhhCCHHHHHHHhc
Q 006955 380 YARCGNIQSALLEFS 394 (624)
Q Consensus 380 ~~~~g~~~~A~~~~~ 394 (624)
.+..|+.+-+..+++
T Consensus 69 A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 69 AATLEDTKIVKILLF 83 (285)
T ss_dssp HTTSSSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 334444444444444
No 299
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.13 E-value=1.3e+02 Score=29.73 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHhccCCCCCc-ccHH-------HHHHHHHcCCChHHHHHHHHhccc
Q 006955 84 VTWNSMISGYVCNGLIDEALRVFHGMPLKDV-VSWN-------LVIGALVNCQRMDLAESYFKEMGA 142 (624)
Q Consensus 84 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-------~l~~~~~~~~~~~~a~~~~~~~~~ 142 (624)
..+|.+++.|...+.++.|..+..+..-|.. .+-+ .+.+.+.-.+++.+|.+.+.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4577778888888888888888887765532 2211 223445567788888877777653
No 300
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.42 E-value=1.6e+02 Score=23.55 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=28.2
Q ss_pred HHHHHHHHHc--cCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 526 GEIAGERVME--LEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 526 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+..+|..+.. +.-.-+..|...+..+...|++++|.++++.-.+.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4555555554 333345556667777777777777777776665554
No 301
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=37.01 E-value=98 Score=30.66 Aligned_cols=54 Identities=19% Similarity=0.138 Sum_probs=35.9
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 515 GACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 515 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
....-...+..|...|.++..+.|.+...|..|+-.....|+.-+|.-.|-+..
T Consensus 160 DL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 333444556777777777777777777777777777777777666665554443
No 302
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.04 E-value=2.7e+02 Score=25.78 Aligned_cols=50 Identities=8% Similarity=-0.132 Sum_probs=21.2
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHH
Q 006955 276 IVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQ 325 (624)
Q Consensus 276 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 325 (624)
+...+..|+.+-+.-+++.-...+...-.+.+...+..|+.+-+..+++.
T Consensus 57 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 34444455555555555444332221112223333444555544444444
No 303
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.61 E-value=2.4e+02 Score=25.66 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=12.4
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCC
Q 006955 274 NVIVGYFEMGEVGSAIKVFELMTTR 298 (624)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~~~~~ 298 (624)
.++.-|...|+.++|...++++..|
T Consensus 8 ~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 8 PIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 3444455555555555555554433
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.08 E-value=75 Score=27.70 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=46.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC--CCCC----ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 006955 407 IICGLAYHGYAEKALELFERMRLT--DFKP----DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480 (624)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 480 (624)
-++.+....++++|..++++..+. ++++ ........+..-.....-.-+..+.+++.. .+++......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~----~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS----SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHH
Confidence 356677778888888877766541 2222 111222222222222222233333333321 234555666777
Q ss_pred HhhccCChHHHHHHHHHc
Q 006955 481 LLGRFGLIDEAMNLLNEI 498 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~ 498 (624)
.+.+.|+-++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 888889999998887553
No 305
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=32.99 E-value=1.4e+02 Score=25.11 Aligned_cols=63 Identities=11% Similarity=0.022 Sum_probs=40.4
Q ss_pred hhhhhHh---hcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHhCCC
Q 006955 304 NVMIFGL---GENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTL-----DLGRQIHAQAIKIARN 367 (624)
Q Consensus 304 ~~l~~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~ 367 (624)
-.+|+++ .+-.+.+.|+-.+-+|.+.| .|.-..-..++.+....|.- ..|...++.....|.+
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3445554 34578999999999999999 77666666666676666652 3344444444455543
No 306
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=32.84 E-value=1.2e+02 Score=21.52 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=23.7
Q ss_pred cCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHH
Q 006955 219 NSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEA 257 (624)
Q Consensus 219 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 257 (624)
.....++|.++++.+...++.+|..++.++...+...-|
T Consensus 48 ~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 344556666666666666666666666666665554433
No 307
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.72 E-value=2e+02 Score=24.30 Aligned_cols=16 Identities=19% Similarity=-0.016 Sum_probs=8.9
Q ss_pred HhcCChHHHHHHHHHH
Q 006955 518 RIHNNIKVGEIAGERV 533 (624)
Q Consensus 518 ~~~g~~~~a~~~~~~~ 533 (624)
...|+.+....+++.-
T Consensus 147 ~~~~~~~~v~~Ll~~g 162 (231)
T 3aji_A 147 AAKGNLKMVHILLFYK 162 (231)
T ss_dssp HHHTCHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHhcC
Confidence 3556666665555543
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.39 E-value=65 Score=25.79 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=13.5
Q ss_pred HHHHHHHHhCCChHHHHHHhccCCCC
Q 006955 149 TIMVNGLVREGRIVEARKLFDKMPAK 174 (624)
Q Consensus 149 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 174 (624)
..++.-|...||.++|.+.++++..|
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p 38 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVP 38 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 34444555555555555555555433
No 309
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=32.07 E-value=2.7e+02 Score=25.43 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=48.8
Q ss_pred HHHHHHHHHcccCCCCcCHH--HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 006955 489 DEAMNLLNEIRADGIEVSPT--VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 489 ~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
....++---+...++.|... +++..+..+.+.+++..|..+.++++++.|. +. ..++|.+++..
T Consensus 178 kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~~-------------~~~qArkil~~ 243 (320)
T 3mkr_B 178 KRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK-PE-------------VAQQTRKILSA 243 (320)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC-HH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-HH-------------HHHHHHHHHHH
Confidence 33455555555555777543 6677888899999999999999999999883 21 34557777776
Q ss_pred HHHCC
Q 006955 567 MKENG 571 (624)
Q Consensus 567 m~~~~ 571 (624)
-.+.+
T Consensus 244 ce~~~ 248 (320)
T 3mkr_B 244 CEKNP 248 (320)
T ss_dssp HHHSC
T ss_pred HhcCC
Confidence 65543
No 310
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.99 E-value=1.1e+02 Score=23.68 Aligned_cols=60 Identities=7% Similarity=0.117 Sum_probs=38.0
Q ss_pred HhHHcCCCCCHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCC
Q 006955 325 QMKESGPSPDNATFTSVLTICSDLP-TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN 385 (624)
Q Consensus 325 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (624)
.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..+...-++.+...|-
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 356677777776553 344444455 667788888888887766666555555666666553
No 311
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=31.64 E-value=3.3e+02 Score=25.50 Aligned_cols=194 Identities=11% Similarity=0.016 Sum_probs=91.5
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCCCCCc--hhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCChhhHHHHHHHhccc
Q 006955 374 NAMITMYARCGNIQSALLEFSSVPIHDI--ISWNSIICGLAYHGY--AEKALELFERMRLTDFKPDDITFVGVLSACSYA 449 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 449 (624)
..++.-|...++.++|...++++..|.. .....++..-...++ -+.+-.++..+.. ++-+.......+...+...
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Confidence 4577778888899999998888875542 223333332222222 2334445555543 4444433333333333332
Q ss_pred Ch--------HHHHHHHHHHhhhhcCCCCCc-chHHHHHHHhhccC--ChHHHHHHHH------Hcc-----cCCCCcC-
Q 006955 450 GL--------VDQGRYYFDCMKNKYFLQPRS-AHYTCVVDLLGRFG--LIDEAMNLLN------EIR-----ADGIEVS- 506 (624)
Q Consensus 450 g~--------~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g--~~~~A~~~~~------~~~-----~~g~~p~- 506 (624)
.+ ++..-.++.++..+..++|.. .-+.. ..-+..| -...|..++. ++. ..|..|.
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~--~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~ve 214 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKG--TVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVN 214 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC-----CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCHH
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhh--cccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccHH
Confidence 22 222333444444444444421 11110 0000000 0111221111 000 1122343
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC-CCc-hHHHHHHHHHhcCC--hHHHHHHHHHHHHCCC
Q 006955 507 --PTVWGALLGACRIHNNIKVGEIAGERVMELEPN-NSG-VYLILTEMYLSCGR--REDAKRIFAQMKENGV 572 (624)
Q Consensus 507 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~-~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~ 572 (624)
......++.-|...||.++|.+.++.+.. |. ... +...+..++.+.++ .+...+++..+...|+
T Consensus 215 elkkki~~lL~EY~~s~D~~EA~~ci~EL~~--p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 215 HLVKEIDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC--TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHccC--CcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 22457788889999999999999988742 31 112 22333334444332 4557778888877765
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.57 E-value=2.1e+02 Score=24.59 Aligned_cols=49 Identities=8% Similarity=0.097 Sum_probs=36.5
Q ss_pred HHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 489 DEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 489 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
+.+..+|..|...|+.-. ...|......+-..|++++|..+|+..++..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 466778888877776554 5567777777778888888888888888744
No 313
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.11 E-value=1.2e+02 Score=24.10 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=38.8
Q ss_pred HHhHHcCCCCCHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCC
Q 006955 324 VQMKESGPSPDNATFTSVLTICSDLP-TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN 385 (624)
Q Consensus 324 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (624)
+.|.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..+...-+..+...|-
T Consensus 6 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3456677777776653 344454555 667788888888877766666555555566665553
No 314
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.85 E-value=1.4e+02 Score=29.71 Aligned_cols=64 Identities=13% Similarity=-0.004 Sum_probs=38.1
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCc--chH-HHHHHHhhccCChHHHHHHHHHccc
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRS--AHY-TCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
..++.+++.|...+.++.|..+..+..--..-.++. ..| -.+...+.-.+++.+|.+.+..+..
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 466777777888888888888877654200000110 111 2345566677788888877777654
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.47 E-value=1.2e+02 Score=24.09 Aligned_cols=61 Identities=10% Similarity=0.065 Sum_probs=36.7
Q ss_pred HHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCC
Q 006955 324 VQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN 385 (624)
Q Consensus 324 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (624)
+.+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..+.-..+..+...|-
T Consensus 16 ~~l~~~g~r~T~qR~~-IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQREE-VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHHHHH-HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3456677777765543 344444455677788888888877766666555555566665553
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.79 E-value=1.2e+02 Score=23.83 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=33.4
Q ss_pred HhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhC
Q 006955 325 QMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCG 384 (624)
Q Consensus 325 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (624)
.+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..+...-++.+...|
T Consensus 12 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 12 TLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 355667777665543 23333334555667777777766665555555444555555554
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.30 E-value=97 Score=24.42 Aligned_cols=45 Identities=13% Similarity=-0.001 Sum_probs=25.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC
Q 006955 406 SIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAG 450 (624)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 450 (624)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 344444455555667777777766655555555555555544444
No 318
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.29 E-value=2.9e+02 Score=25.54 Aligned_cols=140 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCChHHHHHHHhhcCCC---CceehhhhhhHhhc-CCCchHHHHHHHHhHHcCCCCCHHH---HHHHHHHH
Q 006955 273 TNVIVGYFEMGEVGSAIKVFELMTTR---DVTVWNVMIFGLGE-NDLGEEGLKFFVQMKESGPSPDNAT---FTSVLTIC 345 (624)
Q Consensus 273 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~ 345 (624)
..++.-|...|+.++|.+.++++..| ...+...+..++-+ ....+.+..++..+.+.|+-+.... |..++..+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Q ss_pred cCCC-CcHHHHHHHHHHHHhCCCCCc----chhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHH
Q 006955 346 SDLP-TLDLGRQIHAQAIKIARNQFT----TVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420 (624)
Q Consensus 346 ~~~~-~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 420 (624)
.... |...+..++..+...-+..+. .+.+.+...+...|..... ...++..+.+....+.+
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~f--------------l~~vl~~l~~~~g~~~l 160 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASL--------------LLEILGLLCKSMGPKKV 160 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHH--------------HHHHHHHHHHHHCHHHH
T ss_pred hHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHH--------------HHHHHHHHHHHcCHHHH
Q ss_pred HHHHHH
Q 006955 421 LELFER 426 (624)
Q Consensus 421 ~~~~~~ 426 (624)
..+|.+
T Consensus 161 ~~~~~~ 166 (339)
T 1ug3_A 161 GTLWRE 166 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 319
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=27.08 E-value=2.1e+02 Score=23.34 Aligned_cols=58 Identities=14% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HhhccCChHHHHHHHHHcccCCCCcC-----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEVS-----------------PTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~-----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
+|-+..++..|+..++.+.+..+..| ...++.+...|...|+.++|+..+.+.....|
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
No 320
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.03 E-value=1.1e+02 Score=22.14 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=17.8
Q ss_pred ChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHH
Q 006955 191 CVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRID 224 (624)
Q Consensus 191 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (624)
..+.|.+++..+..++..+|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 4455555555555555555555555554444433
No 321
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.40 E-value=1.6e+02 Score=20.03 Aligned_cols=60 Identities=8% Similarity=0.136 Sum_probs=37.5
Q ss_pred HhHHcCCCCCHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCC
Q 006955 325 QMKESGPSPDNATFTSVLTICSDLP-TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN 385 (624)
Q Consensus 325 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (624)
.|.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..+....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 35567777776554 4445555544 556677788777777666666666666666666553
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.17 E-value=4.8e+02 Score=28.43 Aligned_cols=27 Identities=4% Similarity=-0.351 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
.|..++..+-..+-++-+.++.+.+++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 556666666777777777777777776
No 323
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.99 E-value=2.2e+02 Score=22.95 Aligned_cols=68 Identities=9% Similarity=-0.002 Sum_probs=44.8
Q ss_pred hHHHHHHHH-hHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh--CCCCCcchhHHHHHHhHhhCC
Q 006955 317 EEGLKFFVQ-MKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKI--ARNQFTTVSNAMITMYARCGN 385 (624)
Q Consensus 317 ~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 385 (624)
+.+++-+.+ +.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..+.-.-++.+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR~-~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQRE-VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 444544444 4567888877654 4556666667788899999988887 666665555555566666653
No 324
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=23.75 E-value=4.7e+02 Score=24.78 Aligned_cols=329 Identities=7% Similarity=-0.005 Sum_probs=144.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCcc--hHHHHHHHHHcCCChhhHHHHHhcCCCC---CchhHHHHHHHHHhCCChhH
Q 006955 27 MIRGYFKNGFLDNAMCLFNQMPERDMF--TYNTVIAGLMQSDNVQGAKEVFDGMEVR---DVVTWNSMISGYVCNGLIDE 101 (624)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 101 (624)
.+...+..|+.+-+..+++.-..++.. ...+.+...+..|+.+-+.-+++.-... +..-. +.+...+..|+.+-
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~ 95 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNM 95 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHH
Confidence 344445667777666666654332211 1112334444556666665555543211 11111 22333445566665
Q ss_pred HHHHhccCCCCCc---ccHHHHHHHHHcCCChHHHHHHHHhcccC---ChhHHHHHHHHHHhCCChHHHHHHhccCCCCC
Q 006955 102 ALRVFHGMPLKDV---VSWNLVIGALVNCQRMDLAESYFKEMGAR---DVASWTIMVNGLVREGRIVEARKLFDKMPAKD 175 (624)
Q Consensus 102 a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 175 (624)
+.-+++.-..++. ...+ .+...+..|+.+.+..+++.-... +.... +.+...+..|+.+-+..+++.-..++
T Consensus 96 v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~ 173 (437)
T 1n11_A 96 VKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRVAELLLERDAHPN 173 (437)
T ss_dssp HHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence 5555554433221 1111 223334556666666666543321 11111 22334455666665555554332221
Q ss_pred h---hHHHHHHHHHHHcCChhHHHHHHHHcccCCccc--HHHHHHHHHcCCCHHHHHHHhhhCCCCCc---chHHHHHHH
Q 006955 176 V---QAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTS--WKQLINGLVNSRRIDAAISYFKQMPETCE---KTWNSIISV 247 (624)
Q Consensus 176 ~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~ 247 (624)
. ... ..+...+..|+.+-+..+++.-...+... -.+.+...+..|+.+-+..+++.-..++. ...+ .+..
T Consensus 174 ~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~ 251 (437)
T 1n11_A 174 AAGKNGL-TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVT-PLHL 251 (437)
T ss_dssp CCCSSCC-CHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHH
T ss_pred CCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-HHHH
Confidence 1 111 12333455666655555554433221111 11233344556666666666654433221 1112 2333
Q ss_pred HHhcCChHHHHHHHhhcCCCCcc--hhhHHHHHHHhcCChHHHHHHHhhcCCC---CceehhhhhhHhhcCCCchHHHHH
Q 006955 248 LIRNGLVKEAHSYLEKYPYSNIA--SWTNVIVGYFEMGEVGSAIKVFELMTTR---DVTVWNVMIFGLGENDLGEEGLKF 322 (624)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 322 (624)
.+..|+.+-...+++.-..++.. .-...+...+..|..+-+.-+++.-... +..-++.| ...+..|+.+-+
T Consensus 252 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v--- 327 (437)
T 1n11_A 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL-HVASHYGNIKLV--- 327 (437)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHH-HHHHHSSCSHHH---
T ss_pred HHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHH-HHHHHcCcHHHH---
Confidence 44567766666666543322211 1123344455667777666666543322 22223333 333445555433
Q ss_pred HHHhHHcCCCCCHH---HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCc
Q 006955 323 FVQMKESGPSPDNA---TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFT 370 (624)
Q Consensus 323 ~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 370 (624)
+.+.+.|..++.. ..+.+.. ....|+.+ +.+.+.+.|..++.
T Consensus 328 -~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 328 -KFLLQHQADVNAKTKLGYSPLHQ-AAQQGHTD----IVTLLLKNGASPNE 372 (437)
T ss_dssp -HHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHTTCCSCC
T ss_pred -HHHHhcCCCCCCCCCCCCCHHHH-HHHCChHH----HHHHHHHCcCCCCC
Confidence 3334445443321 1222222 23345544 44455566776654
No 325
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.07 E-value=3e+02 Score=25.43 Aligned_cols=181 Identities=11% Similarity=0.033 Sum_probs=86.5
Q ss_pred HHHHhHhhCCHHHHHHHhccCCCCCc-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh------------------
Q 006955 376 MITMYARCGNIQSALLEFSSVPIHDI-ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD------------------ 436 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------------------ 436 (624)
.+...+..|+.+-+..+++.-...+. .-++. +...+..|+.+-+..+++.....|..|+.
T Consensus 56 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (364)
T 3ljn_A 56 ALHLACKFGCVDTAKYLASVGEVHSLWHGQKP-IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVK 134 (364)
T ss_dssp HHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH-HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEE
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCccccCCCCH-HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccC
Confidence 34444556677666666655442222 22222 33344567777666666664444444433
Q ss_pred --hhHHHHHHHhcccC--hHHHHHHHHHHhhhhcCCCCC---cchHHHHHHHhhccCChHHHHHHHHHccc-CCC---Cc
Q 006955 437 --ITFVGVLSACSYAG--LVDQGRYYFDCMKNKYFLQPR---SAHYTCVVDLLGRFGLIDEAMNLLNEIRA-DGI---EV 505 (624)
Q Consensus 437 --~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~---~p 505 (624)
...+.|. ..+..| +.+-+..+++. |..++ ....+.| ...+..|+.+-+..+++.... .+. ..
T Consensus 135 ~~~g~t~L~-~A~~~g~~~~~~v~~Ll~~-----ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 207 (364)
T 3ljn_A 135 HCKGQTALH-WCVGLGPEYLEMIKILVQL-----GASPTAKDKADETPL-MRAMEFRNREALDLMMDTVPSKSSLRLDYA 207 (364)
T ss_dssp EESCCCHHH-HHHHSCGGGHHHHHHHHHH-----TCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHCSCSSSCCTTCC
T ss_pred CCCCCCHHH-HHHHcCCchHHHHHHHHHc-----CCCCcccCCCCCCHH-HHHHHcCCHHHHHHHHhccccccccccccc
Confidence 1122233 334455 56555555543 33333 2223333 334567777777677765433 011 11
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 006955 506 SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
+..-.+.|. .....|+.+-+..+++.-...+..|......|..+ ...|+.+-+.-+++.
T Consensus 208 ~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A-~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 208 NKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS-VRAAMVLLTKELLQK 266 (364)
T ss_dssp CTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH-HHTCCHHHHHHHHHH
T ss_pred CCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHhChHHHHHHHHHc
Confidence 112222232 23467777776666665444443343333333332 345666666555553
No 326
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=23.02 E-value=2.6e+02 Score=23.60 Aligned_cols=185 Identities=8% Similarity=-0.052 Sum_probs=89.7
Q ss_pred HHHHhHhhCCHHHHHHHhccC-------CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH--HHHHHHh
Q 006955 376 MITMYARCGNIQSALLEFSSV-------PIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITF--VGVLSAC 446 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~ 446 (624)
.+...+..|+.+.+..+++.+ ...+..-++.+ ...+..|+.+ +++.+.+.|..|+.... ...+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL-HLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHH-HHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Confidence 455566778988887777621 12233333333 3344566654 45555567766654211 1233334
Q ss_pred cccChHHHHHHHHHHhhhhcCCCC---CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQP---RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNI 523 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 523 (624)
+..|+.+....+++..... ++.+ +....+.+ ...+..|+.+-...+++.-.......+..-. +.+......|+.
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~-~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~~~~ 163 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPG-TLDLEARNYDGLTAL-HVAVNTECQETVQLLLERGADIDAVDIKSGR-SPLIHAVENNSL 163 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTT-SCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHcCCCc-cccccccCcCCCcHH-HHHHHcCCHHHHHHHHHcCCCcccccccCCC-cHHHHHHHcCCH
Confidence 4567777666666554321 1122 22223333 3345667766555555543322111101122 233344567888
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 006955 524 KVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVK 573 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 573 (624)
+....+++.....+..+......|-. ....|+.+ +.+.+.+.|..
T Consensus 164 ~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~ga~ 208 (241)
T 1k1a_A 164 SMVQLLLQHGANVNAQMYSGSSALHS-ASGRGLLP----LVRTLVRSGAD 208 (241)
T ss_dssp HHHHHHHHTTCCTTCBCTTSCBHHHH-HHHHTCHH----HHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHH-HHHcCCHH----HHHHHHhcCCC
Confidence 87777776644444333333233322 23445554 44444556654
No 327
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.00 E-value=1e+02 Score=23.76 Aligned_cols=46 Identities=22% Similarity=0.120 Sum_probs=34.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCh
Q 006955 406 SIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGL 451 (624)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 451 (624)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3556666677788899999999888767777777777777666654
No 328
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.57 E-value=2.1e+02 Score=24.27 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=43.3
Q ss_pred eehhhhhhHhh---cCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHHhCCC
Q 006955 301 TVWNVMIFGLG---ENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPT-----LDLGRQIHAQAIKIARN 367 (624)
Q Consensus 301 ~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 367 (624)
..+-.+|+++. +-.+++.|+-++-+|++.|-.|.-..-..++.+....|. +..|...++.....|.+
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33444556654 457899999999999999988877666666666666554 33444445555555543
No 329
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.42 E-value=1.2e+02 Score=21.53 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=14.4
Q ss_pred ChHHHHHHhccCCCCChhHHHHHHHHHHHcC
Q 006955 160 RIVEARKLFDKMPAKDVQAWNLMIAGYLDNG 190 (624)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 190 (624)
..++|.++++.+..++..+|..++.++.+.|
T Consensus 51 ~~~kar~Lld~l~~kG~~af~~F~~aL~~~~ 81 (94)
T 2p1h_A 51 QQQRAAMLIKMILKKDNDSYVSFYNALLHEG 81 (94)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCHHHHHHHHHHHHHcC
Confidence 3344444444444444444444444444443
No 330
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.38 E-value=1.4e+02 Score=23.65 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=28.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC
Q 006955 406 SIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAG 450 (624)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 450 (624)
.++..+...+.+-.|.++++.+.+.+...+..|....+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 445555556666778888888877665666666655555555544
No 331
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.64 E-value=1.7e+02 Score=18.83 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=16.7
Q ss_pred hccCChHHHHHHHHHcccCCCCcC
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEVS 506 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~ 506 (624)
...|+.+.|+..+-+|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 445677888887777776666654
No 332
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=21.33 E-value=3.7e+02 Score=22.61 Aligned_cols=15 Identities=0% Similarity=-0.230 Sum_probs=8.5
Q ss_pred HhcCChHHHHHHHHH
Q 006955 518 RIHNNIKVGEIAGER 532 (624)
Q Consensus 518 ~~~g~~~~a~~~~~~ 532 (624)
...|+.+.+..+++.
T Consensus 191 ~~~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 191 SGRGLLPLVRTLVRS 205 (241)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHhc
Confidence 455666655555554
No 333
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.85 E-value=3.4e+02 Score=21.96 Aligned_cols=45 Identities=4% Similarity=0.018 Sum_probs=23.0
Q ss_pred HHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 420 ALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 420 a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
+..+|..|..+|+--... .|......+...|++.+|.++|+.-.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666665544432 333444444455555555555555444
No 334
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.21 E-value=1.3e+02 Score=25.16 Aligned_cols=40 Identities=10% Similarity=0.167 Sum_probs=29.5
Q ss_pred hcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCC
Q 006955 311 GENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPT 350 (624)
Q Consensus 311 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 350 (624)
.+-.+.+.|+-.+-+|++.|-.|.-..-..++.+....|.
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3457889999999999999877776666666666655544
No 335
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.09 E-value=3.5e+02 Score=21.81 Aligned_cols=52 Identities=6% Similarity=-0.110 Sum_probs=39.7
Q ss_pred ccCChHHHHHHHHHcccCCCCc--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHc
Q 006955 484 RFGLIDEAMNLLNEIRADGIEV--SPTVWGALLG-A-----CRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 535 (624)
..|++-+|-+++++.=...-.+ +...|..||+ . ....|+...|..++.++..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4499999999999854332244 5667888888 3 2568999999999999987
Done!